Psyllid ID: psy2006

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-
Protein Sequence
MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHGKLDWDEKGTAGRYVRENCKPLHHSP
Secondary Structure (PSIPRED)
cccccccccccEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHccccccccEEEEcccEEccccEEEEcccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEcccccHHHHccccccccEEEEccccccccccccEEEcccccccccccccccHHHHHHHHHHccccccccccccccHHHcccccccccccccHHHcccccccccccccccccccccccccEEEEccccccccccccccccccccccccHHHHccccccccccccHHHHHHHHHcccEEccccccccccccccccccccccccHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEEcccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccEEHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccEEEccccccEEEEEEccccccccccccccccccccccEEEEEcccccccccccEEEEEccccccHHHHHHcccccccccccHHHEEEEccccccccccHHHHcHHHHHHHHHccHHHHccccccccccccccccccccccEEEccHHHcEEccEccccccccHHHccHHHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccEHHcccccccccc
Coil and Loop (DISEMBL)
mcslncvasnhvctNVVYEVDSVVALKIIKNVEKYREAARLEINALQKigekdpngrhLCVKMLDWFDYHGHMCIAFEILGLSVFdflkennylpysldqVRHMSYQLIYAkennylpysldqVRHMSYQLIYAVDYNNKKKREVRRVRRCDirlidfgsatfddehhstivstrhyraperymasddEEHRQLFDLISKMLeyepserislsealrhpffdklpssvrVHAQTQADRILSSVSSLVMRRVRRCDIRlidfgsatfddehhstivstrhyrapevilelgwaqpcdvwsiGCIIFELYLGITLMARKTktkyfyhgkldwdekgtagryvrenckplhhsp
Flexible Loop (DISEMBL)
MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINAlqkigekdpngrHLCVKMLDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIyavdynnkkkrevrrvrrcdirlidfgsatfddehhstivstrhyraperymasdDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAqtqadrilssvsslvmrRVRRCDIRLidfgsatfddehhstIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHgkldwdekgtagryvrenckplhhsp
Low Complexity Region (SEG)
MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNkkkrevrrvrrCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIlssvsslvmrrvrrCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHGKLDWDEKGTAGRYVRENCKPLHHSP
Disordered region (IsUnstruct)
***LNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHY****************LFDLISKMLEY**********ALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHGKLDWDEKGTAGRYVR**********
Disordered Region (DISOPRED)
MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK*********RCDIRLIDFGSATFDDEHHSTIVSTRHYRAP*************************************HPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHGKL****************KPL****
Disordered Region (DISEMBL)
MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHGKLDWDEKGTAGRYVRENCKPLHHSP
Disordered Region (DISPRO)
*CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHGKLDWDEKGTAGRYVRENCKPL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCSLNCVASNHVCTNVVYEVDSVVALKIxxxxxxxxxxxxxxxxxxxxxGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHGKLDWDEKGTAGRYVRENCKPLHHSP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	351	2.2.26 [Sep-21-2011]
P49762	832	Serine/threonine-protein	no	N/A	0.464	0.195	0.682	2e-58
O35491	499	Dual specificity protein	yes	N/A	0.450	0.316	0.629	9e-53
P49760	499	Dual specificity protein	yes	N/A	0.450	0.316	0.629	1e-52
P49761	638	Dual specificity protein	no	N/A	0.455	0.250	0.567	5e-45
O35492	638	Dual specificity protein	no	N/A	0.455	0.250	0.567	6e-45
Q3SX21	490	Dual specificity protein	no	N/A	0.455	0.326	0.567	2e-44
Q63117	490	Dual specificity protein	no	N/A	0.455	0.326	0.567	2e-44
Q9HAZ1	481	Dual specificity protein	no	N/A	0.461	0.336	0.512	2e-44
O35493	481	Dual specificity protein	no	N/A	0.461	0.336	0.512	2e-44
P49759	484	Dual specificity protein	no	N/A	0.658	0.477	0.398	7e-42

>sp|P49762|DOA_DROME Serine/threonine-protein kinase Doa OS=Drosophila melanogaster GN=Doa PE=1 SV=2

 Score =  226 bits (577), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 132/167 (79%), Gaps = 4/167 (2%)

Query: 19  EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
           E D  +ALKIIKNVEKYREAA+LEINAL+KI +KDP+  HLCVKM+DWFDYHGHMCI FE
Sbjct: 500 ERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIVFE 559

Query: 79  ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYA 134
           +LGLSVFDFL+ENNY PY LDQVRHM+YQL Y+ +   +N L ++ L     +     Y 
Sbjct: 560 MLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSDYT 619

Query: 135 VDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
             YN+K  REVRRV+  D+RLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 620 SHYNHKINREVRRVKNTDVRLIDFGSATFDHEHHSTIVSTRHYRAPE 666

Negative regulator of the copia retrotransposon element of the white (w) gene. In the eye, it is required for normal pigmentation, photoreceptor cell development and for organization of interommatidial bristles. Also essential for embryonic segmentation and differentiation of the nervous system. Functions in the control of alternative splicing by phosphorylating the argine/serine-rich splicing factors, SR proteins.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 7EC: .EC: 1EC: 2EC: .EC: 1

>sp|O35491|CLK2_MOUSE Dual specificity protein kinase CLK2 OS=Mus musculus GN=Clk2 PE=1 SV=2

 Score =  207 bits (527), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 102/162 (62%), Positives = 123/162 (75%), Gaps = 4/162 (2%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VALKIIKNVEKY+EAARLEIN L+KI EKDP+ ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct: 189 VALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLS 248

Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYAVDYNN 139
            FDFLK+NNYLPY + QVRHM++QL  A     +N      L     +     Y + YN 
Sbjct: 249 TFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 308

Query: 140 KKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           +KKR+ R V+   +R++DFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 309 EKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPE 350

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex. May be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing and can cause redistribution of SR proteins from speckles to a diffuse nucleoplasmic distribution. Acts as a suppressor of hepatic gluconeogenesis and glucose output by repressing PPARGC1A transcriptional activity on gluconeogenic genes via its phosphorylation. Phosphorylates PPP2R5B thereby stimulating the assembly of PP2A phosphatase with the PPP2R5B-AKT1 complex leading to dephosphorylation of AKT1. Phosphorylates: PTPN1, SRSF1 and SRSF3. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|P49760|CLK2_HUMAN Dual specificity protein kinase CLK2 OS=Homo sapiens GN=CLK2 PE=1 SV=1

 Score =  207 bits (527), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 102/162 (62%), Positives = 123/162 (75%), Gaps = 4/162 (2%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VALKIIKNVEKY+EAARLEIN L+KI EKDP+ ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct: 190 VALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLS 249

Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYAVDYNN 139
            FDFLK+NNYLPY + QVRHM++QL  A     +N      L     +     Y + YN 
Sbjct: 250 TFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 309

Query: 140 KKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           +KKR+ R V+   +R++DFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 310 EKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPE 351

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex. May be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing and can cause redistribution of SR proteins from speckles to a diffuse nucleoplasmic distribution. Acts as a suppressor of hepatic gluconeogenesis and glucose output by repressing PPARGC1A transcriptional activity on gluconeogenic genes via its phosphorylation. Phosphorylates PPP2R5B thereby stimulating the assembly of PP2A phosphatase with the PPP2R5B-AKT1 complex leading to dephosphorylation of AKT1. Phosphorylates: PTPN1, SRSF1 and SRSF3. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|P49761|CLK3_HUMAN Dual specificity protein kinase CLK3 OS=Homo sapiens GN=CLK3 PE=1 SV=3

 Score =  181 bits (460), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 111/164 (67%), Gaps = 4/164 (2%)

Query: 22  SVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG 81
           S VALKII+NV KYREAARLEIN L+KI EKD   + LCV M DWF++HGHMCIAFE+LG
Sbjct: 329 SQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 388

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYAVDY 137
            + F+FLKENN+ PY L  VRHM+YQL +A     EN      L     +     +   Y
Sbjct: 389 KNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLY 448

Query: 138 NNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           N  K  E + V+   IR+ DFGSATFD EHH+TIV+TRHYR PE
Sbjct: 449 NEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPE 492

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex. May be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing and can cause redistribution of SR proteins from speckles to a diffuse nucleoplasmic distribution. Phosphorylates SRSF1 and SRSF3. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|O35492|CLK3_MOUSE Dual specificity protein kinase CLK3 OS=Mus musculus GN=Clk3 PE=1 SV=2

 Score =  181 bits (460), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 111/164 (67%), Gaps = 4/164 (2%)

Query: 22  SVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG 81
           S VALKII+NV KYREAARLEIN L+KI EKD   + LCV M DWF++HGHMCIAFE+LG
Sbjct: 329 SQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 388

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYAVDY 137
            + F+FLKENN+ PY L  VRHM+YQL +A     EN      L     +     +   Y
Sbjct: 389 KNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLY 448

Query: 138 NNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           N  K  E + V+   IR+ DFGSATFD EHH+TIV+TRHYR PE
Sbjct: 449 NEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPE 492

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex. May be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing and can cause redistribution of SR proteins from speckles to a diffuse nucleoplasmic distribution. Phosphorylates SRSF1 and SRSF3. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|Q3SX21|CLK3_BOVIN Dual specificity protein kinase CLK3 OS=Bos taurus GN=CLK3 PE=2 SV=1

 Score =  180 bits (456), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 111/164 (67%), Gaps = 4/164 (2%)

Query: 22  SVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG 81
           S VALKII+NV KYREAARLEIN L+KI EKD   + LCV M DWF++HGHMCIAFE+LG
Sbjct: 181 SQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 240

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYAVDY 137
            + F+FLKENN+ PY L  VRHM+YQL +A     EN      L     +     +   Y
Sbjct: 241 KNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLY 300

Query: 138 NNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           N  K  E + V+   IR+ DFGSATFD EHH+TIV+TRHYR PE
Sbjct: 301 NEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPE 344

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex. May be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing and can cause redistribution of SR proteins from speckles to a diffuse nucleoplasmic distribution. Phosphorylates SRSF1 and SRSF3. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|Q63117|CLK3_RAT Dual specificity protein kinase CLK3 OS=Rattus norvegicus GN=Clk3 PE=2 SV=2

 Score =  180 bits (456), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/164 (56%), Positives = 111/164 (67%), Gaps = 4/164 (2%)

Query: 22  SVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG 81
           S VALKII+NV KYREAARLEIN L+KI EKD   + LCV M DWF++HGHMCIAFE+LG
Sbjct: 181 SQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 240

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYAVDY 137
            + F+FLKENN+ PY L  VRHM+YQL +A     EN      L     +     +   Y
Sbjct: 241 KNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLY 300

Query: 138 NNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           N  K  E + V+   IR+ DFGSATFD EHH+TIV+TRHYR PE
Sbjct: 301 NEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPE 344

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex. May be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing and can cause redistribution of SR proteins from speckles to a diffuse nucleoplasmic distribution. Phosphorylates SRSF1 and SRSF3. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|Q9HAZ1|CLK4_HUMAN Dual specificity protein kinase CLK4 OS=Homo sapiens GN=CLK4 PE=1 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 117/166 (70%), Gaps = 4/166 (2%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VA+KI+KNV +YREAAR EI  L+ +   DPN    CV+ML+WFD+HGH+CI FE+LGLS
Sbjct: 186 VAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLS 245

Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLI----YAKENNYLPYSLDQVRHMSYQLIYAVDYNN 139
            +DF+KEN++LP+ +D +R M+YQ+     +   N      L     +  +  Y V YN+
Sbjct: 246 TYDFIKENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYVVKYNS 305

Query: 140 KKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMA 185
           K KR+ R ++  DI+++DFGSAT+DDEHHST+VSTRHYRAPE  +A
Sbjct: 306 KMKRDERTLKNTDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILA 351

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex and may be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing. Phosphorylates SRSF1 and SRSF3. Required for the regulation of alternative splicing of MAPT/TAU. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|O35493|CLK4_MOUSE Dual specificity protein kinase CLK4 OS=Mus musculus GN=Clk4 PE=1 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/166 (51%), Positives = 117/166 (70%), Gaps = 4/166 (2%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VA+KI+KNV +YREAAR EI  L+ +   DPN    CV+ML+WFD+HGH+CI FE+LGLS
Sbjct: 186 VAVKIVKNVGRYREAARSEIQVLEHLNSTDPNSVFRCVQMLEWFDHHGHVCIVFELLGLS 245

Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLI----YAKENNYLPYSLDQVRHMSYQLIYAVDYNN 139
            +DF+KEN++LP+ +D +R M+YQ+     +   N      L     +  +  Y V YN+
Sbjct: 246 TYDFIKENSFLPFQIDHIRQMAYQICQSINFLHHNKLTHTDLKPENILFVKSDYVVKYNS 305

Query: 140 KKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMA 185
           K KR+ R ++  DI+++DFGSAT+DDEHHST+VSTRHYRAPE  +A
Sbjct: 306 KMKRDERTLKNTDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILA 351

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex and may be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing. Phosphorylates SRSF1 and SRSF3. Required for the regulation of alternative splicing of MAPT/TAU. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

>sp|P49759|CLK1_HUMAN Dual specificity protein kinase CLK1 OS=Homo sapiens GN=CLK1 PE=1 SV=2

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 98/246 (39%), Positives = 140/246 (56%), Gaps = 15/246 (6%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VA+KI+KNV++Y EAAR EI  L+ +   DPN    CV+ML+WF++HGH+CI FE+LGLS
Sbjct: 188 VAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLS 247

Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLI----YAKENNYLPYSLDQVRHMSYQLIYAVDYNN 139
            +DF+KEN +LP+ LD +R M+YQ+     +   N      L     +  Q  Y   YN 
Sbjct: 248 TYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNP 307

Query: 140 KKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLIS 199
           K KR+ R +   DI+++DFGSAT+DDEHHST+VSTRHYRAPE  +A    +   ++ +  
Sbjct: 308 KIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGC 367

Query: 200 KMLEY----------EPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMR 249
            ++EY          +  E +++ E +  P    +    R       DR+     S   R
Sbjct: 368 ILIEYYLGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGR 427

Query: 250 RV-RRC 254
            V RRC
Sbjct: 428 YVSRRC 433

Dual specificity kinase acting on both serine/threonine and tyrosine-containing substrates. Phosphorylates serine- and arginine-rich (SR) proteins of the spliceosomal complex and may be a constituent of a network of regulatory mechanisms that enable SR proteins to control RNA splicing. Phosphorylates: SRSF1, SRSF3 and PTPN1. Regulates the alternative splicing of tissue factor (F3) pre-mRNA in endothelial cells and adenovirus E1A pre-mRNA.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 2

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
195391430	2597	GJ24405 [Drosophila virilis] gi|19415244	0.464	0.062	0.688	2e-60
195112304	2050	GI22371 [Drosophila mojavensis] gi|19391	0.464	0.079	0.694	5e-60
195056095	2060	GH13234 [Drosophila grimshawi] gi|193892	0.464	0.079	0.694	9e-60
322795986	738	hypothetical protein SINV_02695 [Solenop	0.464	0.220	0.682	1e-59
221460167	2045	darkener of apricot, isoform P [Drosophi	0.464	0.079	0.676	3e-59
195341059	2050	GM12747 [Drosophila sechellia] gi|194131	0.464	0.079	0.676	3e-59
386766690	1535	darkener of apricot, isoform Y [Drosophi	0.464	0.106	0.676	4e-59
383862481	833	PREDICTED: uncharacterized protein LOC10	0.464	0.195	0.676	5e-59
307175342	712	Serine/threonine-protein kinase Doa [Cam	0.464	0.228	0.682	8e-59
195449309	2101	GK22547 [Drosophila willistoni] gi|19416	0.464	0.077	0.682	1e-58

>gi|195391430|ref|XP_002054363.1| GJ24405 [Drosophila virilis] gi|194152449|gb|EDW67883.1| GJ24405 [Drosophila virilis]

 Score =  238 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 115/167 (68%), Positives = 130/167 (77%), Gaps = 4/167 (2%)

Query: 19   EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
            E D  +ALKIIKNVEKYREAA+LEINAL+KI +KDP+G HLCVKM+DWFDYHGHMCI FE
Sbjct: 2264 ERDFCMALKIIKNVEKYREAAKLEINALEKIAQKDPHGDHLCVKMIDWFDYHGHMCIVFE 2323

Query: 79   ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYA 134
            +LGLSVFDFL+ENNY PYSLDQVRHM+YQL Y+     +N      L     +     Y 
Sbjct: 2324 MLGLSVFDFLRENNYEPYSLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSDYT 2383

Query: 135  VDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
              YN+K  REVRRV+  D+RLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 2384 SHYNHKINREVRRVKSTDVRLIDFGSATFDHEHHSTIVSTRHYRAPE 2430

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195112304|ref|XP_002000714.1| GI22371 [Drosophila mojavensis] gi|193917308|gb|EDW16175.1| GI22371 [Drosophila mojavensis]

 Score =  237 bits (605), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 116/167 (69%), Positives = 134/167 (80%), Gaps = 4/167 (2%)

Query: 19   EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
            E D  +ALKIIKNVEKYREAA+LEINAL+KI +KDP+G HLCVKM+DWFDYHGHMCI FE
Sbjct: 1717 ERDFCMALKIIKNVEKYREAAKLEINALEKIAQKDPHGEHLCVKMIDWFDYHGHMCIVFE 1776

Query: 79   ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYA 134
            +LGLSVFDFL+ENNY PYSLDQVRHM+YQL Y+ +   +N L ++ L     +     Y 
Sbjct: 1777 MLGLSVFDFLRENNYEPYSLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSDYT 1836

Query: 135  VDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
              YN+K  REVRRV+  D+RLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 1837 SHYNHKLNREVRRVKNTDVRLIDFGSATFDHEHHSTIVSTRHYRAPE 1883

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195056095|ref|XP_001994948.1| GH13234 [Drosophila grimshawi] gi|193892711|gb|EDV91577.1| GH13234 [Drosophila grimshawi]

 Score =  236 bits (603), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 116/167 (69%), Positives = 134/167 (80%), Gaps = 4/167 (2%)

Query: 19   EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
            E D  +ALKIIKNVEKYREAA+LEINAL+KI +KDP+G HLCVKM+DWFDYHGHMCI FE
Sbjct: 1727 ERDFCMALKIIKNVEKYREAAKLEINALEKIAQKDPHGDHLCVKMIDWFDYHGHMCIVFE 1786

Query: 79   ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYA 134
            +LGLSVFDFL+ENNY PYSLDQVRHM+YQL Y+ +   +N L ++ L     +     Y 
Sbjct: 1787 MLGLSVFDFLRENNYEPYSLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSEYT 1846

Query: 135  VDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
              YN+K  REVRRV+  D+RLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 1847 SHYNHKINREVRRVKSTDVRLIDFGSATFDHEHHSTIVSTRHYRAPE 1893

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795986|gb|EFZ18610.1| hypothetical protein SINV_02695 [Solenopsis invicta]

 Score =  236 bits (601), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 132/167 (79%), Gaps = 4/167 (2%)

Query: 19  EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
           ++D V+ALKIIKNVEKYREAA+LEINAL+KI  KDP G+HLCVKMLDWF+YHGHMCIAFE
Sbjct: 415 QMDHVMALKIIKNVEKYREAAKLEINALEKIANKDPEGQHLCVKMLDWFNYHGHMCIAFE 474

Query: 79  ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYA 134
           +LGLSVFDFL++N+Y PY L+ VRHM YQL YA     +N      L     +     Y 
Sbjct: 475 MLGLSVFDFLRDNSYQPYPLEHVRHMGYQLCYAVKFLHDNKLTHTDLKPENILFVDSDYD 534

Query: 135 VDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
             YNNKK+R++RRV+R DIRLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 535 SSYNNKKRRDMRRVKRTDIRLIDFGSATFDHEHHSTIVSTRHYRAPE 581

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221460167|ref|NP_001014681.2| darkener of apricot, isoform P [Drosophila melanogaster] gi|220903246|gb|AAO41610.2| darkener of apricot, isoform P [Drosophila melanogaster]

 Score =  235 bits (599), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 113/167 (67%), Positives = 128/167 (76%), Gaps = 4/167 (2%)

Query: 19   EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
            E D  +ALKIIKNVEKYREAA+LEINAL+KI +KDP+  HLCVKM+DWFDYHGHMCI FE
Sbjct: 1713 ERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIVFE 1772

Query: 79   ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYA 134
            +LGLSVFDFL+ENNY PY LDQVRHM+YQL Y+     +N      L     +     Y 
Sbjct: 1773 MLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSDYT 1832

Query: 135  VDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
              YN+K  REVRRV+  D+RLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 1833 SHYNHKINREVRRVKNTDVRLIDFGSATFDHEHHSTIVSTRHYRAPE 1879

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195341059|ref|XP_002037129.1| GM12747 [Drosophila sechellia] gi|194131245|gb|EDW53288.1| GM12747 [Drosophila sechellia]

 Score =  234 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 113/167 (67%), Positives = 128/167 (76%), Gaps = 4/167 (2%)

Query: 19   EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
            E D  +ALKIIKNVEKYREAA+LEINAL+KI +KDP+  HLCVKM+DWFDYHGHMCI FE
Sbjct: 1724 ERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIVFE 1783

Query: 79   ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYA 134
            +LGLSVFDFL+ENNY PY LDQVRHM+YQL Y+     +N      L     +     Y 
Sbjct: 1784 MLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSDYT 1843

Query: 135  VDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
              YN+K  REVRRV+  D+RLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 1844 SHYNHKINREVRRVKNTDVRLIDFGSATFDHEHHSTIVSTRHYRAPE 1890

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386766690|ref|NP_001036763.2| darkener of apricot, isoform Y [Drosophila melanogaster] gi|383293007|gb|ABI31212.2| darkener of apricot, isoform Y [Drosophila melanogaster]

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 113/167 (67%), Positives = 128/167 (76%), Gaps = 4/167 (2%)

Query: 19   EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
            E D  +ALKIIKNVEKYREAA+LEINAL+KI +KDP+  HLCVKM+DWFDYHGHMCI FE
Sbjct: 1203 ERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIVFE 1262

Query: 79   ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYA 134
            +LGLSVFDFL+ENNY PY LDQVRHM+YQL Y+     +N      L     +     Y 
Sbjct: 1263 MLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSDYT 1322

Query: 135  VDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
              YN+K  REVRRV+  D+RLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 1323 SHYNHKINREVRRVKNTDVRLIDFGSATFDHEHHSTIVSTRHYRAPE 1369

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862481|ref|XP_003706712.1| PREDICTED: uncharacterized protein LOC100880767 [Megachile rotundata]

 Score =  234 bits (597), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 113/167 (67%), Positives = 132/167 (79%), Gaps = 4/167 (2%)

Query: 19  EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
           ++D V+ALKIIKNVEKYREAA+LEINAL+KI  KDP G+HLCVKMLDWF+YHGHMCIAFE
Sbjct: 510 QMDHVMALKIIKNVEKYREAAKLEINALEKIATKDPEGQHLCVKMLDWFNYHGHMCIAFE 569

Query: 79  ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYA 134
           +LGLSVFDFL++NNY PY L+ VRH+ YQL YA     +N      L     +     Y 
Sbjct: 570 MLGLSVFDFLRDNNYQPYPLEHVRHIGYQLCYAVKFLHDNKLTHTDLKPENILFVDSDYE 629

Query: 135 VDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
             YNNKK++++RRV+R DIRLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 630 SIYNNKKRKDIRRVKRTDIRLIDFGSATFDHEHHSTIVSTRHYRAPE 676

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175342|gb|EFN65361.1| Serine/threonine-protein kinase Doa [Camponotus floridanus]

 Score =  233 bits (595), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 131/167 (78%), Gaps = 4/167 (2%)

Query: 19  EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
           ++D V+ALKIIKNVEKYREAA+LEINAL+KI  KDP G+HLCVKMLDWF+YHGHMCIAFE
Sbjct: 389 QMDHVMALKIIKNVEKYREAAKLEINALEKIAGKDPEGQHLCVKMLDWFNYHGHMCIAFE 448

Query: 79  ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYA 134
           +LGLSVFDFL++N Y PY L+ VRHM YQL YA     +N      L     +     Y 
Sbjct: 449 MLGLSVFDFLRDNCYQPYPLEHVRHMGYQLCYAVKFLHDNKLTHTDLKPENILFVDSDYD 508

Query: 135 VDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
             YNNKK+R++RRV+R DIRLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 509 STYNNKKRRDMRRVKRTDIRLIDFGSATFDHEHHSTIVSTRHYRAPE 555

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195449309|ref|XP_002072017.1| GK22547 [Drosophila willistoni] gi|194168102|gb|EDW83003.1| GK22547 [Drosophila willistoni]

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/167 (68%), Positives = 133/167 (79%), Gaps = 4/167 (2%)

Query: 19   EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
            E D  +ALKIIKNVEKYREAA+LEINAL+KI +KDP+G HLCVKM+DWFDYHGHMCI FE
Sbjct: 1769 ERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHGDHLCVKMIDWFDYHGHMCIVFE 1828

Query: 79   ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYA 134
            +LGLSVFDFL+ENNY PY LDQVRHM+YQL Y+ +   ++ L ++ L     +     Y 
Sbjct: 1829 MLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDSRLTHTDLKPENILFVDSDYT 1888

Query: 135  VDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
              YN+K  REVRRV+  D+RLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 1889 AHYNHKINREVRRVKNTDVRLIDFGSATFDHEHHSTIVSTRHYRAPE 1935

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	351
FB|FBgn0259220	832	Doa "Darkener of apricot" [Dro	0.464	0.195	0.640	3.2e-66
UNIPROTKB|Q5ZJ82	501	CLK2 "Uncharacterized protein"	0.450	0.315	0.604	2e-63
UNIPROTKB|E1B9Q2	500	CLK2 "Uncharacterized protein"	0.450	0.316	0.604	5.4e-63
UNIPROTKB|F1P919	612	CLK2 "Uncharacterized protein"	0.450	0.258	0.604	5.4e-63
UNIPROTKB|B1AVT0	497	CLK2 "Dual-specificity protein	0.450	0.317	0.604	5.4e-63
UNIPROTKB|P49760	499	CLK2 "Dual specificity protein	0.450	0.316	0.604	5.4e-63
UNIPROTKB|F1RLJ5	500	CLK2 "Uncharacterized protein"	0.450	0.316	0.604	5.4e-63
ZFIN|ZDB-GENE-030131-298	527	clk2a "CDC-like kinase 2a" [Da	0.515	0.343	0.551	2.9e-62
MGI|MGI:1098669	499	Clk2 "CDC-like kinase 2" [Mus	0.450	0.316	0.604	2.9e-62
RGD|1359711	500	Clk2 "CDC-like kinase 2" [Ratt	0.450	0.316	0.604	2.9e-62

FB|FBgn0259220 Doa "Darkener of apricot" [Drosophila melanogaster (taxid:7227)]

 Score = 536 (193.7 bits), Expect = 3.2e-66, Sum P(2) = 3.2e-66
 Identities = 107/167 (64%), Positives = 124/167 (74%)

Query:    19 EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
             E D  +ALKIIKNVEKYREAA+LEINAL+KI +KDP+  HLCVKM+DWFDYHGHMCI FE
Sbjct:   500 ERDYCMALKIIKNVEKYREAAKLEINALEKIAQKDPHCDHLCVKMIDWFDYHGHMCIVFE 559

Query:    79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYA 134
             +LGLSVFDFL+ENNY PY LDQVRHM+YQL Y+ +   +N L ++ L     +     Y 
Sbjct:   560 MLGLSVFDFLRENNYEPYPLDQVRHMAYQLCYSVKFLHDNRLTHTDLKPENILFVDSDYT 619

Query:   135 VDYNNXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
               YN+            D+RLIDFGSATFD EHHSTIVSTRHYRAPE
Sbjct:   620 SHYNHKINREVRRVKNTDVRLIDFGSATFDHEHHSTIVSTRHYRAPE 666

GO:0007399 "nervous system development" evidence=NAS;IMP

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0004672 "protein kinase activity" evidence=ISS;IDA

GO:0007350 "blastoderm segmentation" evidence=NAS;IMP

GO:0048749 "compound eye development" evidence=NAS;IMP

GO:0005634 "nucleus" evidence=IC;IDA;NAS

GO:0048477 "oogenesis" evidence=IMP

GO:0007417 "central nervous system development" evidence=NAS

GO:0008362 "chitin-based embryonic cuticle biosynthetic process" evidence=NAS

GO:0045494 "photoreceptor cell maintenance" evidence=NAS

GO:0007548 "sex differentiation" evidence=IGI;IMP

GO:0004674 "protein serine/threonine kinase activity" evidence=NAS;IDA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=NAS

GO:0042051 "compound eye photoreceptor development" evidence=IEP;IMP;NAS

GO:0008407 "chaeta morphogenesis" evidence=NAS

GO:0000165 "MAPK cascade" evidence=IGI

GO:0005737 "cytoplasm" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0048102 "autophagic cell death" evidence=IEP

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0030717 "karyosome formation" evidence=IMP

GO:0005524 "ATP binding" evidence=IEA

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009306 "protein secretion" evidence=IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0048854 "brain morphogenesis" evidence=IMP

GO:0001964 "startle response" evidence=IMP

GO:0031987 "locomotion involved in locomotory behavior" evidence=IMP

UNIPROTKB|Q5ZJ82 CLK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 500 (181.1 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
 Identities = 98/162 (60%), Positives = 118/162 (72%)

Query:    24 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
             VALKIIKNVEKY+EAARLEIN L+KI EKDP  ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct:   192 VALKIIKNVEKYKEAARLEINVLEKINEKDPENKNLCVRMFDWFDYHGHMCISFELLGLS 251

Query:    84 VFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYAVDYNN 139
              FDFLK+NNYLPY + QVRHM++Q+  A +   +N L ++ L     +     Y + YN 
Sbjct:   252 TFDFLKDNNYLPYPIHQVRHMAFQVCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 311

Query:   140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                          IR++DFGSATFD EHHSTIVSTRHYRAPE
Sbjct:   312 EKKRDERSVKSTAIRVVDFGSATFDHEHHSTIVSTRHYRAPE 353

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IEA

GO:0045721 "negative regulation of gluconeogenesis" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IEA

UNIPROTKB|E1B9Q2 CLK2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 502 (181.8 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 98/162 (60%), Positives = 119/162 (73%)

Query:    24 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
             VALKIIKNVEKY+EAARLEIN L+KI EKDP+ ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct:   190 VALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLS 249

Query:    84 VFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYAVDYNN 139
              FDFLK+NNYLPY + QVRHM++QL  A +   +N L ++ L     +     Y + YN 
Sbjct:   250 TFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 309

Query:   140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                          +R++DFGSATFD EHHSTIVSTRHYRAPE
Sbjct:   310 EKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPE 351

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0045721 "negative regulation of gluconeogenesis" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|F1P919 CLK2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 502 (181.8 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 98/162 (60%), Positives = 119/162 (73%)

Query:    24 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
             VALKIIKNVEKY+EAARLEIN L+KI EKDP+ ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct:   302 VALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLS 361

Query:    84 VFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYAVDYNN 139
              FDFLK+NNYLPY + QVRHM++QL  A +   +N L ++ L     +     Y + YN 
Sbjct:   362 TFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 421

Query:   140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                          +R++DFGSATFD EHHSTIVSTRHYRAPE
Sbjct:   422 EKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPE 463

GO:0005524 "ATP binding" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

UNIPROTKB|B1AVT0 CLK2 "Dual-specificity protein kinase CLK2" [Homo sapiens (taxid:9606)]

 Score = 502 (181.8 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 98/162 (60%), Positives = 119/162 (73%)

Query:    24 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
             VALKIIKNVEKY+EAARLEIN L+KI EKDP+ ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct:   188 VALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLS 247

Query:    84 VFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYAVDYNN 139
              FDFLK+NNYLPY + QVRHM++QL  A +   +N L ++ L     +     Y + YN 
Sbjct:   248 TFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 307

Query:   140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                          +R++DFGSATFD EHHSTIVSTRHYRAPE
Sbjct:   308 EKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPE 349

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P49760 CLK2 "Dual specificity protein kinase CLK2" [Homo sapiens (taxid:9606)]

 Score = 502 (181.8 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 98/162 (60%), Positives = 119/162 (73%)

Query:    24 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
             VALKIIKNVEKY+EAARLEIN L+KI EKDP+ ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct:   190 VALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLS 249

Query:    84 VFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYAVDYNN 139
              FDFLK+NNYLPY + QVRHM++QL  A +   +N L ++ L     +     Y + YN 
Sbjct:   250 TFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 309

Query:   140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                          +R++DFGSATFD EHHSTIVSTRHYRAPE
Sbjct:   310 EKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPE 351

GO:0005524 "ATP binding" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IDA

GO:0010212 "response to ionizing radiation" evidence=IMP

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0045721 "negative regulation of gluconeogenesis" evidence=ISS

GO:0046777 "protein autophosphorylation" evidence=ISS

UNIPROTKB|F1RLJ5 CLK2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 502 (181.8 bits), Expect = 5.4e-63, Sum P(2) = 5.4e-63
 Identities = 98/162 (60%), Positives = 119/162 (73%)

Query:    24 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
             VALKIIKNVEKY+EAARLEIN L+KI EKDP+ ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct:   190 VALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLS 249

Query:    84 VFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYAVDYNN 139
              FDFLK+NNYLPY + QVRHM++QL  A +   +N L ++ L     +     Y + YN 
Sbjct:   250 TFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 309

Query:   140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                          +R++DFGSATFD EHHSTIVSTRHYRAPE
Sbjct:   310 EKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPE 351

GO:0046777 "protein autophosphorylation" evidence=IEA

GO:0045721 "negative regulation of gluconeogenesis" evidence=IEA

GO:0043484 "regulation of RNA splicing" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-030131-298 clk2a "CDC-like kinase 2a" [Danio rerio (taxid:7955)]

 Score = 507 (183.5 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
 Identities = 102/185 (55%), Positives = 123/185 (66%)

Query:    24 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
             VALKIIKNVEKY+EAARLEIN L++I EKDP   +LCV+M DWFDYHGHMCI+FE+L LS
Sbjct:   215 VALKIIKNVEKYKEAARLEINVLERINEKDPENNNLCVQMFDWFDYHGHMCISFELLALS 274

Query:    84 VFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYAVDYNN 139
              FDFLKENNYLPYS++QVRHM+YQ+  A     EN      L     +     Y V YN 
Sbjct:   275 TFDFLKENNYLPYSINQVRHMAYQVCLAVKFLHENKLTHTDLKPENILFVNSDYTVTYNV 334

Query:   140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLIS 199
                          +R++DFGSATFD EHHSTIVSTRHYRAPE  +     +   ++ + S
Sbjct:   335 EKKRDERTVKNTAVRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGS 394

Query:   200 KMLEY 204
              + EY
Sbjct:   395 ILFEY 399

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:1098669 Clk2 "CDC-like kinase 2" [Mus musculus (taxid:10090)]

 Score = 502 (181.8 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
 Identities = 98/162 (60%), Positives = 119/162 (73%)

Query:    24 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
             VALKIIKNVEKY+EAARLEIN L+KI EKDP+ ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct:   189 VALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLS 248

Query:    84 VFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYAVDYNN 139
              FDFLK+NNYLPY + QVRHM++QL  A +   +N L ++ L     +     Y + YN 
Sbjct:   249 TFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 308

Query:   140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                          +R++DFGSATFD EHHSTIVSTRHYRAPE
Sbjct:   309 EKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPE 350

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO;IDA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISO;IDA

GO:0010212 "response to ionizing radiation" evidence=ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=IDA

GO:0032526 "response to retinoic acid" evidence=IDA

GO:0042221 "response to chemical stimulus" evidence=IDA

GO:0043484 "regulation of RNA splicing" evidence=ISO

GO:0045721 "negative regulation of gluconeogenesis" evidence=IMP

GO:0046777 "protein autophosphorylation" evidence=IDA

RGD|1359711 Clk2 "CDC-like kinase 2" [Rattus norvegicus (taxid:10116)]

 Score = 502 (181.8 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
 Identities = 98/162 (60%), Positives = 119/162 (73%)

Query:    24 VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
             VALKIIKNVEKY+EAARLEIN L+KI EKDP+ ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct:   190 VALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLS 249

Query:    84 VFDFLKENNYLPYSLDQVRHMSYQLIYAKE---NNYLPYS-LDQVRHMSYQLIYAVDYNN 139
              FDFLK+NNYLPY + QVRHM++QL  A +   +N L ++ L     +     Y + YN 
Sbjct:   250 TFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 309

Query:   140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                          +R++DFGSATFD EHHSTIVSTRHYRAPE
Sbjct:   310 EKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPE 351

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004713 "protein tyrosine kinase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0010212 "response to ionizing radiation" evidence=ISO

GO:0018108 "peptidyl-tyrosine phosphorylation" evidence=ISO

GO:0032526 "response to retinoic acid" evidence=ISO

GO:0042221 "response to chemical stimulus" evidence=ISO

GO:0043484 "regulation of RNA splicing" evidence=ISO

GO:0045721 "negative regulation of gluconeogenesis" evidence=ISO

GO:0046777 "protein autophosphorylation" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35491	CLK2_MOUSE	2, ., 7, ., 1, 2, ., 1	0.6296	0.4501	0.3166	yes	N/A
P49760	CLK2_HUMAN	2, ., 7, ., 1, 2, ., 1	0.6296	0.4501	0.3166	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	351
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	7e-27
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-17
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	2e-17
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-16
PTZ00284	467	PTZ00284, PTZ00284, protein kinase; Provisional	6e-16
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-13
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	3e-12
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	8e-12
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	3e-11
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	5e-11
PTZ00284	467	PTZ00284, PTZ00284, protein kinase; Provisional	9e-11
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-10
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	2e-10
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	2e-10
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	3e-10
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	3e-10
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	4e-10
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	7e-10
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-09
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	3e-09
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	4e-09
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	9e-09
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	1e-08
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	1e-08
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	4e-08
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	4e-08
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	5e-08
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	8e-08
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	9e-08
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	1e-07
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	1e-07
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-07
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	2e-07
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	3e-07
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	3e-07
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	4e-07
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	4e-07
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	5e-07
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	7e-07
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	1e-06
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	1e-06
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	1e-06
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	1e-06
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	2e-06
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	2e-06
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	2e-06
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	3e-06
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	3e-06
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	3e-06
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	3e-06
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	4e-06
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	5e-06
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	5e-06
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	5e-06
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	6e-06
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	7e-06
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	7e-06
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	7e-06
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	8e-06
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	8e-06
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	1e-05
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-05
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-05
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	1e-05
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	2e-05
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-05
PTZ00426	340	PTZ00426, PTZ00426, cAMP-dependent protein kinase	2e-05
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	2e-05
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	3e-05
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	3e-05
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-05
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	3e-05
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	4e-05
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	4e-05
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	5e-05
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	5e-05
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	5e-05
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	8e-05
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	8e-05
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	8e-05
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	9e-05
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	9e-05
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	9e-05
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	1e-04
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-04
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	1e-04
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	1e-04
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	1e-04
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	1e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	1e-04
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	1e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	1e-04
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	1e-04
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	1e-04
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-04
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	2e-04
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	2e-04
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-04
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	2e-04
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-04
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	2e-04
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	2e-04
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	2e-04
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	2e-04
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	3e-04
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	3e-04
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	3e-04
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	4e-04
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	4e-04
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	4e-04
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	4e-04
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	4e-04
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	5e-04
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	5e-04
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	5e-04
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	5e-04
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	5e-04
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	5e-04
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	7e-04
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	7e-04
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	8e-04
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	0.001
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	0.001
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	0.001
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	0.001
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	0.001
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	0.001
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	0.001
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.001
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	0.001
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	0.001
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	0.002
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	0.002
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	0.002
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	0.002
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	0.002
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	0.002
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	0.002
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	0.002
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	0.002
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	0.002
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	0.002
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	0.002
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	0.002
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	0.002
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.002
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	0.002
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	0.002
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	0.002
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	0.002
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	0.003
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	0.003
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	0.003
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	0.003
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	0.003
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	0.003
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	0.003
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	0.003
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	0.003
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	0.004
cd05576	237	cd05576, STKc_RPK118_like, Catalytic domain of the	0.004
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	0.004
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	0.004
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	0.004

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score =  106 bits (267), Expect = 7e-27
 Identities = 67/273 (24%), Positives = 100/273 (36%), Gaps = 99/273 (36%)

Query: 16  VVYEV-----DSVVALKIIK--NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD 68
            VY         +VA+K+IK   ++K RE    EI  L+K+  K PN     V++ D F+
Sbjct: 14  KVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKL--KHPN----IVRLYDVFE 67

Query: 69  YHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHM 127
               + +  E   G  +FD LK+   L                           D+ R  
Sbjct: 68  DEDKLYLVMEYCEGGDLFDLLKKRGRLS-------------------------EDEARFY 102

Query: 128 SYQLIYAVDYNNKKKREVRR---------VRRCDIRLIDFGSATF--DDEHHSTIVSTRH 176
             Q++ A++Y + K   V R              ++L DFG A      E  +T V T  
Sbjct: 103 LRQILSALEYLHSKGI-VHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPE 161

Query: 177 YRAPERYM------ASD--------------------DEEHRQLF--------------- 195
           Y APE  +      A D                    D++  +LF               
Sbjct: 162 YMAPEVLLGKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPFPPPEW 221

Query: 196 -------DLISKMLEYEPSERISLSEALRHPFF 221
                  DLI K+L  +P +R++  EAL+HPFF
Sbjct: 222 DISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 81.0 bits (201), Expect = 1e-17
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 252 RRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL 309
               ++L DFG A      E  +T V T  Y APEV+L  G+ +  D+WS+G I++EL  
Sbjct: 132 EDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVILYELLT 191

Query: 310 GITL 313
           G   
Sbjct: 192 GKPP 195

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 79.2 bits (196), Expect = 2e-17
 Identities = 59/243 (24%), Positives = 85/243 (34%), Gaps = 74/243 (30%)

Query: 16  VVYEV-----DSVVALKIIK--NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD 68
            VY          VA+KIIK  +     E    EI  L+K+    PN     VK+   F+
Sbjct: 8   TVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKL--NHPN----IVKLYGVFE 61

Query: 69  YHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHM 127
              H+ +  E   G S+ D LKEN                            S D++  +
Sbjct: 62  DENHLYLVMEYCEGGSLKDLLKENEG------------------------KLSEDEILRI 97

Query: 128 SYQLIYAVDYNNKKKREVRRVRRCDIR--------------LIDFGSATFDDEHHS---T 170
             Q++  ++Y +        +   D++              L DFG +       S   T
Sbjct: 98  LLQILEGLEYLHSNG-----IIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKT 152

Query: 171 IVSTRHYRAPE--RYMASDDEEH------------RQLFDLISKMLEYEPSERISLSEAL 216
           IV T  Y APE         E+              +L DLI KML+ +P +R S  E L
Sbjct: 153 IVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYELPELKDLIRKMLQKDPEKRPSAKEIL 212

Query: 217 RHP 219
            H 
Sbjct: 213 EHL 215

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 55/266 (20%), Positives = 93/266 (34%), Gaps = 98/266 (36%)

Query: 23  VVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI 79
           +VA+KI+K      K  + AR EI  L+++    PN     V+++D F+   H+ +  E 
Sbjct: 26  IVAVKILKKRSEKSKKDQTARREIRILRRL--SHPNI----VRLIDAFEDKDHLYLVMEY 79

Query: 80  L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYN 138
             G  +FD+L                             P S D+ + ++ Q++  ++Y 
Sbjct: 80  CEGGDLFDYLSRGG-------------------------PLSEDEAKKIALQILRGLEYL 114

Query: 139 NKKK---REVRR-----VRRCDIRLIDFGSA---TFDDEHHSTIVSTRHYRAPERYMA-- 185
           +      R+++           +++ DFG A          +T V T  Y APE  +   
Sbjct: 115 HSNGIIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGN 174

Query: 186 -------------------------SDDEEHRQLF------------------------- 195
                                    S +    QL                          
Sbjct: 175 GYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLEFDEPKWSSGSEEAK 234

Query: 196 DLISKMLEYEPSERISLSEALRHPFF 221
           DLI K L  +PS+R +  E L+HP+F
Sbjct: 235 DLIKKCLNKDPSKRPTAEEILQHPWF 260

Length = 260

>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional

 Score = 78.1 bits (192), Expect = 6e-16
 Identities = 34/59 (57%), Positives = 41/59 (69%), Gaps = 4/59 (6%)

Query: 254 CDIRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           C +R+ D G     DE HS   IVSTRHYR+PEV+L LGW    D+WS+GCII+ELY G
Sbjct: 285 CRVRICDLGGCC--DERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTG 341

Length = 467

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 251 VRRCDIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
                +++ DFG A          +T V T  Y APEV+L   G+    DVWS+G I++E
Sbjct: 132 DENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGVILYE 191

Query: 307 LYLGITL 313
           L  G   
Sbjct: 192 LLTGKPP 198

Length = 260

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 66.0 bits (162), Expect = 3e-12
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 254 CDIRLIDFGSATFDDEHHSTI------VSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D            V TR YRAPE++L    + +  D+WS+GCI  E
Sbjct: 140 CDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAE 199

Query: 307 LYLGITL 313
           L     L
Sbjct: 200 LLTRKPL 206

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 64.6 bits (158), Expect = 8e-12
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 5/66 (7%)

Query: 246 LVMRRVRRCDIRLIDFGSA-TFDDEHHST-IVSTRHYRAPEVILELGWAQPCDVWSIGCI 303
           LV    +   +++ DFG A  +  E   T +V T  YRAPEV+L+  +A P D+WS+GCI
Sbjct: 139 LVTSDGQ---VKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCI 195

Query: 304 IFELYL 309
             EL+ 
Sbjct: 196 FAELFR 201

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 63.4 bits (154), Expect = 3e-11
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D   +  V TR YRAPEVIL  + + Q  D+WS+GCI+ E+  G  
Sbjct: 155 CELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGKP 214

Query: 313 L 313
           L
Sbjct: 215 L 215

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 62.5 bits (152), Expect = 5e-11
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIFELYLG 310
           CD+++ DFG A   D   +  VSTR+YRAPE++L   W +     D+WS GCI  E+  G
Sbjct: 145 CDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLT--WQKYDVEVDIWSAGCIFAEMLEG 202

Query: 311 ITLMARKTKTKYFY 324
             L   K     F 
Sbjct: 203 KPLFPGKDHVNQFS 216

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional

 Score = 62.3 bits (151), Expect = 9e-11
 Identities = 53/167 (31%), Positives = 82/167 (49%), Gaps = 19/167 (11%)

Query: 25  ALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF-DYHGHMCIAFEILGLS 83
           A+KI++NV KY   A++EI  ++K+ + DP  R   +K+  +F +  GHMCI     G  
Sbjct: 158 AVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKYGPC 217

Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKR 143
           + D++ ++   P+S    RH++ Q+I+ +    L Y   ++  M   L            
Sbjct: 218 LLDWIMKHG--PFSH---RHLA-QIIF-QTGVALDYFHTELHLMHTDLKPENILMETSDT 270

Query: 144 EVRRVRR-------CDIRLIDFGSATFDDEHHS--TIVSTRHYRAPE 181
            V  V         C +R+ D G     DE HS   IVSTRHYR+PE
Sbjct: 271 VVDPVTNRALPPDPCRVRICDLGGCC--DERHSRTAIVSTRHYRSPE 315

Length = 467

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 61.1 bits (148), Expect = 2e-10
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)

Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D   +  V TR YRAPEVIL  + + Q  D+WS+GCI+ E+  G T
Sbjct: 154 CELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGKT 213

Query: 313 LMARK 317
           L   K
Sbjct: 214 LFKGK 218

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 155 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGKT 214

Query: 313 L 313
           L
Sbjct: 215 L 215

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 14/91 (15%)

Query: 256 IRLIDFGSATF-----------DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCII 304
           ++L DFG +             D++    IV T  Y APEVIL  G ++  D WS+GCI+
Sbjct: 132 LKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCIL 191

Query: 305 FELYLGITLMARKTKTKYFYH---GKLDWDE 332
           +E  +GI     +T  + F +   GK++W E
Sbjct: 192 YEFLVGIPPFHGETPEEIFQNILNGKIEWPE 222

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)

Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 157 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 216

Query: 313 L 313
           L
Sbjct: 217 L 217

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 253 RCDIRLIDFGSA--TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G
Sbjct: 154 DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRG 213

Query: 311 ITL 313
             L
Sbjct: 214 TVL 216

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 59.3 bits (144), Expect = 4e-10
 Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 4/64 (6%)

Query: 254 CDIRLIDFGSA-TFDDEH--HSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYL 309
             ++L DFG A +F      ++  V TR YRAPE++L + G++ P D+WS+GCI  EL  
Sbjct: 135 GVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLS 194

Query: 310 GITL 313
              L
Sbjct: 195 RRPL 198

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 59.3 bits (143), Expect = 7e-10
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C++R++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G  
Sbjct: 155 CELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKA 214

Query: 313 L 313
           L
Sbjct: 215 L 215

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 57.2 bits (139), Expect = 1e-09
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 256 IRLIDFGSATFDDEHHS---TIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFELYLGI 311
           ++L DFG +       S   TIV T  Y APEV+L  G +++  D+WS+G I++EL    
Sbjct: 132 VKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYELPELK 191

Query: 312 TLMAR 316
            L+ +
Sbjct: 192 DLIRK 196

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 7/64 (10%)

Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 143 CDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAE 202

Query: 307 LYLG 310
           +   
Sbjct: 203 MLSN 206

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 256 IRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT 312
           I+L DFG A     +    +T   T  Y APEV+L  G+ +  D WS+G +++E+  G  
Sbjct: 132 IKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKP 191

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 55.3 bits (134), Expect = 9e-09
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)

Query: 256 IRLIDFGSAT-FDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG AT  +D      ++V T ++ APEVI   G +   D+WS+GC + EL  G
Sbjct: 138 VKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTG 195

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 254 CDIRLIDFG-SATFDDE-HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            +++LIDFG SA   D    +T+V T ++ APEVI    +    D+WS+G    EL
Sbjct: 135 GEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIEL 190

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 12/70 (17%)

Query: 246 LVMRRVRRCDIRLIDFGSATFDDEHHS-----TIVSTRHYRAPEVILELGW-AQPCDVWS 299
           LV        +++ DFG A    E  S       VSTR YRAPE++L     + P D+W+
Sbjct: 131 LVSGPEV---VKIADFGLAR---EIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWA 184

Query: 300 IGCIIFELYL 309
           +GCI+ ELY 
Sbjct: 185 LGCIMAELYT 194

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L+DFG A      +   T   T  Y APE+IL  G+    D WS+G +++EL  G
Sbjct: 132 VKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTG 188

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 53.9 bits (129), Expect = 4e-08
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)

Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           C ++++DFG A     +   +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ EL  G
Sbjct: 160 CTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKG 218

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 53.6 bits (128), Expect = 5e-08
 Identities = 39/146 (26%), Positives = 77/146 (52%), Gaps = 13/146 (8%)

Query: 167 HHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLS---EALRHPFFDK 223
           +H  I+S  +   P++ +    EE + ++ L+ ++++    + I +    E + +  +  
Sbjct: 74  NHKNIISLLNVFTPQKSL----EEFQDVY-LVMELMDANLCQVIQMELDHERMSYLLYQM 128

Query: 224 LPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH--STIVSTRHYR 281
           L     +H+     R L   S++V++    C ++++DFG A         +  V TR+YR
Sbjct: 129 LCGIKHLHSAGIIHRDLKP-SNIVVKS--DCTLKILDFGLARTAGTSFMMTPYVVTRYYR 185

Query: 282 APEVILELGWAQPCDVWSIGCIIFEL 307
           APEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 186 APEVILGMGYKENVDIWSVGCIMGEM 211

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 52.5 bits (126), Expect = 8e-08
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 10/94 (10%)

Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA 315
           ++L DFG +    E+    V T  Y APE IL +G  +  D WS+GC+IFE   G     
Sbjct: 136 LKLTDFGLSRNGLENKK-FVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPFH 194

Query: 316 RKTKTKYF---YHGKLDWDEKGTAGRYVRENCKP 346
            +T    F      +++W E+      V+E C P
Sbjct: 195 AETPDAVFDNILSRRINWPEE------VKEFCSP 222

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 52.3 bits (125), Expect = 9e-08
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 21/116 (18%)

Query: 221 FDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH--STIVSTR 278
            D L S   VH   +   IL + S           I+L DFG A         +++V T 
Sbjct: 123 LDFLHSHRVVHRDLKPQNILVTSSG---------QIKLADFGLARIYSFQMALTSVVVTL 173

Query: 279 HYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHGKLDWDEKG 334
            YRAPEV+L+  +A P D+WS+GCI  E++          + K  + G  D D+ G
Sbjct: 174 WYRAPEVLLQSSYATPVDLWSVGCIFAEMF----------RRKPLFRGSSDVDQLG 219

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 17/29 (58%), Positives = 24/29 (82%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFF 221
           +  DL+SKML+Y P++RIS  EAL+HP+F
Sbjct: 254 EGIDLLSKMLQYNPAKRISAKEALKHPYF 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 52.4 bits (125), Expect = 1e-07
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G 
Sbjct: 163 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 222

Query: 312 TL 313
            L
Sbjct: 223 VL 224

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 256 IRLIDFGSATF----DDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A           +  V+TR YRAPE+++ +  + +P DVW+IGCI+ EL  G
Sbjct: 139 LKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDG 198

Query: 311 ITLMARKTKTKYFYH 325
             L    +     Y 
Sbjct: 199 EPLFPGDSDIDQLYL 213

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 51.5 bits (123), Expect = 2e-07
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY 308
           ++L DFG A       +   +V T  YRAPEV+L+  +A P D+WS+GCI  E++
Sbjct: 147 VKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMF 201

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 3/55 (5%)

Query: 256 IRLIDFGSA--TFDDEHHSTIVSTRHYRAPEVILELGWAQP-CDVWSIGCIIFEL 307
           ++L DFGS    +    ++  +STR YRAPE +L  G+  P  D+W++GC+ FE+
Sbjct: 138 LKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEI 192

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 17/70 (24%)

Query: 254 CDIRLIDFGSA----TFDDEHHSTI----VSTRHYRAPEVILELGWAQPC-----DVWSI 300
           C ++L DFG A      ++   + +    V+TR YRAPE++L             D+WS+
Sbjct: 144 CRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILL----GSTRYTKGVDMWSV 199

Query: 301 GCIIFELYLG 310
           GCI+ E+ LG
Sbjct: 200 GCILGEMLLG 209

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 51.0 bits (123), Expect = 4e-07
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+ KML ++P +RI+  EAL HP+  +L
Sbjct: 267 DLLEKMLVFDPKKRITADEALAHPYLAQL 295

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 50.3 bits (120), Expect = 4e-07
 Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 9/64 (14%)

Query: 256 IRLIDFGSA-----TFDDEHHSTIVSTRH----YRAPEVILELGWAQPCDVWSIGCIIFE 306
           I+LIDFG A           HS ++ + H    + APEVI E G+ +  D+WSIGC +FE
Sbjct: 141 IKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFE 200

Query: 307 LYLG 310
           +  G
Sbjct: 201 MATG 204

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 254 CDIRLIDFGSATFDDEHH---STIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYL 309
           CD+++ DFG A    E     +  V TR YRAPE++L    +    DVWS+GCI  E   
Sbjct: 145 CDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAE--- 201

Query: 310 GITLMARKT 318
              L+ RK 
Sbjct: 202 ---LLGRKP 207

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 4/74 (5%)

Query: 256 IRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLGI 311
           I+L DFG A   T   + ++  V+TR YRAPE+++ +  +  P DVW+IGC+  EL  G 
Sbjct: 139 IKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQ 198

Query: 312 TLMARKTKTKYFYH 325
            L   K+     Y 
Sbjct: 199 PLWPGKSDVDQLYL 212

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 14/36 (38%), Positives = 25/36 (69%)

Query: 191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS 226
             +  DL+S+ML+++P ERI++ +AL+HPF  +   
Sbjct: 267 SPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHD 302

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 25/62 (40%), Positives = 37/62 (59%), Gaps = 8/62 (12%)

Query: 254 CDIRLIDFGSA----TFDDEHHSTI---VSTRHYRAPEVILELG-WAQPCDVWSIGCIIF 305
           C++R+ DFG A    +   EH   +   V+TR YRAPE++L L  +    D+WS+GCI  
Sbjct: 144 CELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFA 203

Query: 306 EL 307
           E+
Sbjct: 204 EM 205

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 256 IRLIDFGSATFDDEHHS---TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           ++L DFG A       S   T V T +Y +PE +  + + +  D+WS+GC+I+EL
Sbjct: 149 VKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYEL 203

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 13/100 (13%)

Query: 230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVI 286
           +H   + + IL S S +V         +L DFG A       E ++  V+TR YRAPE++
Sbjct: 122 IHRDIKPENILVSQSGVV---------KLCDFGFARTLAAPGEVYTDYVATRWYRAPELL 172

Query: 287 L-ELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYH 325
           + +  + +  D+W++GC++ E+  G  L    +     YH
Sbjct: 173 VGDTKYGRAVDIWAVGCLVTEMLTGEPLFPGDSDIDQLYH 212

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 48.7 bits (117), Expect = 2e-06
 Identities = 20/56 (35%), Positives = 31/56 (55%)

Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           I++ DFG A        T+  T  Y APE+IL  G+ +  D W++G +I+E+  G 
Sbjct: 140 IKITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGY 195

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 173 STRHYRAPE--RYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF 221
            T+ Y +    ++M    +   Q FDL+ K+LEY+P++RI+  EAL HP+F
Sbjct: 266 KTKTYPSNSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF 316

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 7/63 (11%)

Query: 255 DIRLIDFGSA-------TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            +R+ DFG+A       T   E    ++ T  + APEV+    + + CDVWS+GC+I E+
Sbjct: 142 RLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEM 201

Query: 308 YLG 310
              
Sbjct: 202 ATA 204

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 5/42 (11%)

Query: 184 MASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP 225
            ASDD       DL+ ++L   P++RI+  +AL HP+F   P
Sbjct: 253 AASDD-----ALDLLQRLLTLNPNKRITARQALEHPYFSNDP 289

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 14/27 (51%), Positives = 24/27 (88%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFF 221
           FDL++++L Y+P++RIS  +AL+HP+F
Sbjct: 267 FDLLNRLLTYDPAKRISAEDALKHPYF 293

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 8/63 (12%)

Query: 254 CDIRLIDFG-----SATF--DDEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIF 305
           C++++ DFG     S     +    +  V+TR YRAPE++L    + +  DVWS+GCI+ 
Sbjct: 142 CELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCILA 201

Query: 306 ELY 308
           EL 
Sbjct: 202 ELL 204

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 48.3 bits (115), Expect = 3e-06
 Identities = 20/40 (50%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 271 HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           HS +V T +Y APEV+L  G+ Q CD WS+G I++E+ +G
Sbjct: 202 HS-LVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 240

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 8/66 (12%)

Query: 256 IRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELG---WAQPCDVWSIGCIIFELYL 309
           ++L DFG A      +   +  V TR YRAPE  L  G   +    D+WS+GCI  EL L
Sbjct: 141 LKLADFGLARSFGSPNRKMTHQVVTRWYRAPE--LLFGARHYGVGVDMWSVGCIFAELLL 198

Query: 310 GITLMA 315
            +  + 
Sbjct: 199 RVPFLP 204

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 15/26 (57%), Positives = 21/26 (80%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFF 221
           DL+ K+L Y+P ERI+  +ALRHP+F
Sbjct: 257 DLLKKLLAYDPDERITAKQALRHPYF 282

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 16/26 (61%), Positives = 22/26 (84%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFF 221
           DL+SKML Y+P++RIS   AL+HP+F
Sbjct: 258 DLLSKMLVYDPAKRISAKAALQHPYF 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 16/27 (59%), Positives = 21/27 (77%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFD 222
           DL+ KML Y+P++RIS   AL HP+FD
Sbjct: 269 DLLQKMLRYDPAKRISAKAALTHPYFD 295

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 42/174 (24%), Positives = 72/174 (41%), Gaps = 46/174 (26%)

Query: 23  VVALKIIKN-VEKYREAARL-EINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
           +VA+K +K     + E   L E+ +L+K+        ++ VK+ + F  +  +   FE  
Sbjct: 26  LVAIKKMKKKFYSWEECMNLREVKSLRKL----NEHPNI-VKLKEVFRENDELYFVFE-- 78

Query: 81  GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK 140
                       Y+  +L       YQL+  ++      S   +R + YQ++  + + +K
Sbjct: 79  ------------YMEGNL-------YQLMKDRKGKPFSES--VIRSIIYQILQGLAHIHK 117

Query: 141 K-------KREVRRVRRCD-IRLIDFGSATFDDEHHS-----TIVSTRHYRAPE 181
                   K E   V   + +++ DFG A    E  S       VSTR YRAPE
Sbjct: 118 HGFFHRDLKPENLLVSGPEVVKIADFGLAR---EIRSRPPYTDYVSTRWYRAPE 168

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 19/57 (33%), Positives = 32/57 (56%)

Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT 312
           I+L DFG +     + +++V +  Y APEV+   G+    D WS+GC+++E   G  
Sbjct: 140 IKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFP 196

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score = 46.9 bits (111), Expect = 7e-06
 Identities = 19/38 (50%), Positives = 28/38 (73%)

Query: 273 TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++V T +Y APEV+L  G+ Q CD WS+G I+FE+ +G
Sbjct: 207 SLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVG 244

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 46.5 bits (110), Expect = 7e-06
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 4/59 (6%)

Query: 256 IRLIDFGSA----TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A       + +++  V+TR YR+PE++L   + +  D+WS+GCI+ EL  G
Sbjct: 139 LKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDG 197

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 57/269 (21%), Positives = 94/269 (34%), Gaps = 94/269 (34%)

Query: 16  VVYEV-----DSVVALKIIK-NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY 69
            VY+         VA+K+IK   ++ +E    EI  L+K   K PN     VK    +  
Sbjct: 15  EVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKC--KHPN----IVKYYGSYLK 68

Query: 70  HGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMS 128
              + I  E   G S+ D LK  N                           +  Q+ ++ 
Sbjct: 69  KDELWIVMEFCSGGSLKDLLKSTN------------------------QTLTESQIAYVC 104

Query: 129 YQLIYAVDYNNKKKREVRRVR--------RCDIRLIDFG-SATFDDE-HHSTIVSTRHYR 178
            +L+  ++Y +      R ++          +++LIDFG SA   D    +T+V T ++ 
Sbjct: 105 KELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWM 164

Query: 179 APE-----RY---------------MA------SDDEEHRQLF----------------- 195
           APE      Y               +A      S+    + LF                 
Sbjct: 165 APEVINGKPYDYKADIWSLGITAIELAEGKPPYSELPPMKALFKIATNGPPGLRNPEKWS 224

Query: 196 ----DLISKMLEYEPSERISLSEALRHPF 220
               D + K L+  P +R +  + L+HPF
Sbjct: 225 DEFKDFLKKCLQKNPEKRPTAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 23/80 (28%)

Query: 256 IRLIDFGSATFDDE-----------------------HHSTIVSTRHYRAPEVILELGWA 292
           I++ DFG+A   D                          ++ V T  Y +PE++ E    
Sbjct: 141 IKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAG 200

Query: 293 QPCDVWSIGCIIFELYLGIT 312
           +  D+W++GCII+++  G  
Sbjct: 201 KSSDLWALGCIIYQMLTGKP 220

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 18/38 (47%), Positives = 28/38 (73%)

Query: 273 TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++V T +Y APEV+L  G+ Q CD WS+G I++E+ +G
Sbjct: 207 SLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVG 244

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%)

Query: 255 DIRLIDFGSATFDDEHHSTI----VSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYL 309
            ++L DFG A    + +S      V T  YR PE++L    +    D+WS+GCI+ EL+L
Sbjct: 138 VLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFL 197

Query: 310 GITLMARKT 318
           G  +    T
Sbjct: 198 GKPIFQGST 206

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 256 IRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           ++L DFG +       +   T+V T +Y +PE+     +    D+WS+GC+++EL
Sbjct: 142 VKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYEL 196

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 1/40 (2%)

Query: 271 HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +ST V T  Y APEV L+ G+ + CD WS+G I++E+ +G
Sbjct: 197 YST-VGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVG 235

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 5/59 (8%)

Query: 254 CDIRLIDFGSA---TFDDEHHSTI-VSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFEL 307
           C +++ DFG A     D+  H T  V T++YRAPE+++    +    D+WS+GCI  EL
Sbjct: 140 CVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAEL 198

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 255 DIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            ++L DFG A   T +    +++V T ++ APEVI    +    D+WS+G +  E+
Sbjct: 154 SVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEM 209

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic subunit; Provisional

 Score = 45.4 bits (107), Expect = 2e-05
 Identities = 20/55 (36%), Positives = 32/55 (58%)

Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A   D    T+  T  Y APE++L +G  +  D W++G  I+E+ +G
Sbjct: 170 IKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVG 224

Length = 340

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 32/89 (35%)

Query: 256 IRLIDFGSAT-FDDEHHS-------------------------------TIVSTRHYRAP 283
           I+L DFG     +                                    + V T  Y AP
Sbjct: 140 IKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAP 199

Query: 284 EVILELGWAQPCDVWSIGCIIFELYLGIT 312
           EV+    +   CD WS+G I++E+  G  
Sbjct: 200 EVLRGTPYGLECDWWSLGVILYEMLYGFP 228

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 44/177 (24%)

Query: 19  EVDSVVALKIIKNVEK---YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI 75
               +VA+K IK   +     + A  EI  L+++    PN     +K+LD F + G + +
Sbjct: 22  LTGEIVAIKKIKLRFESEGIPKTALREIKLLKEL--NHPN----IIKLLDVFRHKGDLYL 75

Query: 76  AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAV 135
            FE +   ++  +K+                                 ++   YQL+  +
Sbjct: 76  VFEFMDTDLYKLIKDRQR------------------------GLPESLIKSYLYQLLQGL 111

Query: 136 DY---NNKKKREVRR-----VRRCDIRLIDFGSA-TFDDEH--HSTIVSTRHYRAPE 181
            +   +    R+++           ++L DFG A +F      ++  V TR YRAPE
Sbjct: 112 AFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPE 168

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 252 RRCDIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFEL 307
           R   ++L DFG A         ++  V T  YRAPE++L    ++   D+WS+GCI  E+
Sbjct: 133 RDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEM 192

Query: 308 YLG 310
             G
Sbjct: 193 ITG 195

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 256 IRLIDFGSA-----TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A         E   ++  T ++ APEVI    + +  D+WS+GC + E+  G
Sbjct: 140 VKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATG 199

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 3/63 (4%)

Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLGIT 312
           ++L DFGSA      +   + + +R YRAPE++L    +    D+WS+GCII E+ LG  
Sbjct: 210 LKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYP 269

Query: 313 LMA 315
           + +
Sbjct: 270 IFS 272

Length = 440

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 273 TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           T + T HY APEV     ++   D+WS+GC+++E+
Sbjct: 160 TQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEM 194

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 15/27 (55%), Positives = 22/27 (81%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFF 221
            DL+  +L Y+PS+R+S +EALRHP+F
Sbjct: 259 LDLLKGLLVYDPSKRLSAAEALRHPYF 285

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 44.3 bits (105), Expect = 5e-05
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)

Query: 183 YMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFD 222
           Y  S    H +   L+ +ML ++P +RIS ++AL HP+ D
Sbjct: 254 YTLSSQATH-EAVHLLCRMLVFDPDKRISAADALAHPYLD 292

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 44.3 bits (103), Expect = 5e-05
 Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 12/78 (15%)

Query: 247 VMRRVRRCDIRLIDFGSATF---------DDEHHSTIVSTRHYRAPEVILELGWAQPC-- 295
           ++       ++LIDFG A                ST V T  Y APEV+L L  A     
Sbjct: 132 ILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSS 191

Query: 296 -DVWSIGCIIFELYLGIT 312
            D+WS+G  ++EL  G+ 
Sbjct: 192 SDIWSLGITLYELLTGLP 209

Length = 384

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 43.8 bits (103), Expect = 5e-05
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 252 RRCDIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +   ++L DFGSA   T    +  T V T +Y  PE+   + +    D+WS+GCI++EL
Sbjct: 135 QNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYEL 193

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 15/26 (57%), Positives = 20/26 (76%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFF 221
           DL+ KML + P +RIS  EAL+HP+F
Sbjct: 262 DLLKKMLTFNPHKRISAFEALQHPYF 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 15/27 (55%), Positives = 21/27 (77%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFF 221
            DL+ KML Y+P++RIS  +AL HP+F
Sbjct: 259 LDLLEKMLIYDPAKRISAKKALNHPYF 285

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 14/76 (18%)

Query: 252 RRCDIRLIDFGSA--------TFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGC 302
           +R +++L DFG A        TF +E     V T  YRAP+V+L    ++   D+WS+GC
Sbjct: 135 KRGELKLADFGLARAFGIPVNTFSNE-----VVTLWYRAPDVLLGSRTYSTSIDIWSVGC 189

Query: 303 IIFELYLGITLMARKT 318
           I+ E+  G  L     
Sbjct: 190 IMAEMITGRPLFPGTN 205

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFF 221
           Q  DL+S+ML Y+P +RI+  +AL HP+F
Sbjct: 255 QALDLLSQMLHYDPHKRITAEQALAHPYF 283

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 255 DIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           D++L DFG +   T      +T V T  + APEVI + G+ +  D+WS+G    EL  G
Sbjct: 136 DVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKG 194

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 274 IVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIFELYLG 310
           +V TR YR PE++L  G  +     D+W IGC+  E++  
Sbjct: 186 LVVTRWYRPPELLL--GERRYTTAVDIWGIGCVFAEMFTR 223

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+ KML ++PS+RI++ EAL HP+   L
Sbjct: 269 DLLEKMLVFDPSKRITVEEALAHPYLASL 297

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 192 RQLFDLISKMLEYEPSERISLSEALRHPFF 221
               DL+ K+L  +P +RIS  +AL+H +F
Sbjct: 258 PSALDLLDKLLTLDPKKRISADQALQHEYF 287

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 271 HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +ST V T  Y APE+ L+ G+ Q CD WS+G I+FE  +G
Sbjct: 206 YST-VGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIG 244

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 18/74 (24%)

Query: 256 IRLIDFG--------SATFDDEHH----------STIVSTRHYRAPEVILELGWAQPCDV 297
           I+L DFG          T   E H            +  T  Y APEVIL  G+ +P D 
Sbjct: 140 IKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDW 199

Query: 298 WSIGCIIFELYLGI 311
           W++G I++E  +G 
Sbjct: 200 WAMGIILYEFLVGC 213

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 50/205 (24%), Positives = 84/205 (40%), Gaps = 37/205 (18%)

Query: 124 VRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERY 183
           VRH S Q +YA+   +K       ++R D       SA F +E      +   +   + +
Sbjct: 62  VRHKSSQKVYAMKLLSK----FEMIKRSD-------SAFFWEERDIMAFANSPW-VVQLF 109

Query: 184 MASDDEEHRQLF-------DLISKMLEYE-PSERISLSEALRHPFFDKLPSSVRVHAQTQ 235
            A  D+++  +        DL++ M  Y+ P +      A      D + S   +H   +
Sbjct: 110 CAFQDDKYLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVK 169

Query: 236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELG- 290
            D +L           +   ++L DFG+    DE       T V T  Y +PEV+   G 
Sbjct: 170 PDNMLLD---------KHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGG 220

Query: 291 ---WAQPCDVWSIGCIIFELYLGIT 312
              + + CD WS+G  +FE+ +G T
Sbjct: 221 DGYYGRECDWWSVGVFLFEMLVGDT 245

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 14/27 (51%), Positives = 21/27 (77%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFF 221
            +L  K L+YEP +RIS +EA++HP+F
Sbjct: 265 EELALKFLQYEPKKRISAAEAMKHPYF 291

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 3/34 (8%)

Query: 188 DEEHRQLFDLISKMLEYEPSERISLSEALRHPFF 221
           DE+ R   DL+S+ML Y+P++RIS   AL HPFF
Sbjct: 254 DEDGR---DLLSQMLHYDPNKRISAKAALAHPFF 284

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 7/60 (11%)

Query: 253 RCDIRLIDFGSA-----TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
               +L DFG +     T      +T++ T  + APEVI E+G+    D+WS+G    E+
Sbjct: 135 EGQAKLADFGVSGQLTDTMAKR--NTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEM 192

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 12/93 (12%)

Query: 221 FDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFG---SATFDDEHHSTIVST 277
            D L S+  +H   ++D IL  +            ++L DFG     T +    ST+V T
Sbjct: 128 LDFLHSNQVIHRDIKSDNILLGMDG---------SVKLTDFGFCAQITPEQSKRSTMVGT 178

Query: 278 RHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            ++ APEV+    +    D+WS+G +  E+  G
Sbjct: 179 PYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 255 DIRLIDFGSAT------FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +++L DFG++              ++  T ++ +PEVI   G+ +  DVWS+GC + E+
Sbjct: 142 NVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEM 200

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 34/131 (25%), Positives = 55/131 (41%), Gaps = 28/131 (21%)

Query: 196 DLISKMLEYEPSER------ISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMR 249
           DL++ M  Y+  E+        +  AL     D + S   +H   + D +L   S     
Sbjct: 129 DLVNLMSNYDIPEKWARFYTAEVVLAL-----DAIHSMGFIHRDVKPDNMLLDKSG---- 179

Query: 250 RVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELG----WAQPCDVWSIG 301
                 ++L DFG+    D        T V T  Y +PEV+   G    + + CD WS+G
Sbjct: 180 -----HLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVG 234

Query: 302 CIIFELYLGIT 312
             ++E+ +G T
Sbjct: 235 VFLYEMLVGDT 245

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 10/65 (15%)

Query: 256 IRLIDFGSA-------TFDDEHHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIGCIIF 305
           I+L DFG A       T   E   ++  T  Y APEVI      G  +  D+WS+GC++ 
Sbjct: 138 IKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVL 197

Query: 306 ELYLG 310
           E+  G
Sbjct: 198 EMATG 202

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           CD+++ DFG A   D   +  VSTR+YRAPE
Sbjct: 145 CDLKICDFGLARIQDPQMTGYVSTRYYRAPE 175

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 5/46 (10%)

Query: 180 PERYMASDDEEHRQLF-----DLISKMLEYEPSERISLSEALRHPF 220
           P+     D E H +L      DL+SKML  +P +RIS+ +AL+HP+
Sbjct: 268 PDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPY 313

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 45/174 (25%)

Query: 23  VVALKIIKNVEK---YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI 79
           +VA+K  K  E     ++ A  E+  L+++  +  N     V + + F   G + + FE 
Sbjct: 28  IVAIKKFKESEDDEDVKKTALREVKVLRQL--RHEN----IVNLKEAFRRKGRLYLVFEY 81

Query: 80  LGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN 139
           +  ++ + L+ +   P  L                       D VR   +QL+ A+ Y +
Sbjct: 82  VERTLLELLEAS---PGGLPP---------------------DAVRSYIWQLLQAIAYCH 117

Query: 140 KKKREVRRVRRCDI--------RLIDFGSATF----DDEHHSTIVSTRHYRAPE 181
                 R ++  +I        +L DFG A           +  V+TR YRAPE
Sbjct: 118 SHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPE 171

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 252 RRCDIRLIDFGSA-TFDD--EHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFEL 307
            R  +++ DFG A  +    + ++ +V T  YRAPE++L    ++   D+WS+GCI  EL
Sbjct: 141 NRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAEL 200

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 9/60 (15%)

Query: 255 DIRLIDFGSA-TFDDE---HHSTIVSTRHYRAPEVILELG---WAQPCDVWSIGCIIFEL 307
            +++ DFG A  F +E    +S  V+TR YRAPE++   G   +    D+W++GCI  EL
Sbjct: 137 VLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELL--YGARKYDPGVDLWAVGCIFAEL 194

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 14/61 (22%)

Query: 256 IRLIDFGSA--------TFDDEHHSTIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFE 306
           I+L DFG A        T+  E     V T  YRAPE++L    ++   D+WS+GCI  E
Sbjct: 139 IKLADFGLARAFGVPVRTYTHE-----VVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAE 193

Query: 307 L 307
           +
Sbjct: 194 M 194

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 14/65 (21%)

Query: 252 RRCDIRLIDFGSA--------TFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGC 302
           R   ++L DFG A        TF  E     V T  YRAPE++L    ++ P D+WS+GC
Sbjct: 138 RTNALKLADFGLARAFGIPVRTFTHE-----VVTLWYRAPEILLGSRHYSTPVDIWSVGC 192

Query: 303 IIFEL 307
           I  E+
Sbjct: 193 IFAEM 197

Length = 294

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 273 TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHGKLDWDE 332
           + V T  Y APEV ++ G+ + CD WS+G I++E+ +G      +T  +  Y   ++W E
Sbjct: 195 STVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQET-YRKVMNWKE 253

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 273 TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHGKLDWDE 332
           + V T  Y APEV ++ G+ + CD WS+G I++E+ +G      +T  +  Y   ++W E
Sbjct: 195 STVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSETPQET-YKKVMNWKE 253

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 20/26 (76%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFF 221
           DLI  ML ++P +R + S+AL+HP+F
Sbjct: 258 DLIKDMLRWDPKKRPTASQALQHPYF 283

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 18/67 (26%)

Query: 252 RRCDIRLIDFGSA--------TFDDEHHSTIVSTRHYRAPEVILELGWAQ---PCDVWSI 300
           R   ++L DFG A        T+  E     V T  YRAPE++L  G  Q   P D+WSI
Sbjct: 134 REGALKLADFGLARAFGVPVRTYTHE-----VVTLWYRAPEILL--GSRQYSTPVDIWSI 186

Query: 301 GCIIFEL 307
           GCI  E+
Sbjct: 187 GCIFAEM 193

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 14/115 (12%)

Query: 201 MLEYEPSERISLSEALRHPF--FDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRL 258
           +L+  P E   ++  LR      D L S  ++H   +A  +L S          + D++L
Sbjct: 92  LLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVLLS---------EQGDVKL 142

Query: 259 IDFGSA---TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            DFG A   T      +T V T  + APEVI +  +    D+WS+G    EL  G
Sbjct: 143 ADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKG 197

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+SKML  +PS+RI+   AL H +F  L
Sbjct: 262 DLLSKMLRLDPSKRITARAALEHEYFKDL 290

Length = 294

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 8/72 (11%)

Query: 254 CDIRLIDFGSA--TFDDEHHSTI----VSTRHYRAPEVILEL--GWAQPCDVWSIGCIIF 305
           C +++ DFG A   F+D   +      V+TR YRAPE+       +    D+WSIGCI  
Sbjct: 140 CKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFA 199

Query: 306 ELYLGITLMARK 317
           E+  G  L   K
Sbjct: 200 EVLTGKPLFPGK 211

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 253 RCDIRLIDFG-SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           R +I+L DFG S    D   ++ V TR Y +PE +    ++   D+WS+G  + EL +G
Sbjct: 140 RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIG 198

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 5/113 (4%)

Query: 198 ISKMLEYEPSERISLSEALRHPFFDKLPSSVR-VHAQTQADRILSSVSSLVMRR--VRRC 254
           +S+M++Y   ++  + E     +F +L S+V  +H++    R +   +  +     V+  
Sbjct: 89  LSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLG 148

Query: 255 DIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           D+ L  F S+     H  ++V T +Y +PE I E G+    D+WS+GC+++E+
Sbjct: 149 DLGLGRFFSSKTTAAH--SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 41.2 bits (96), Expect = 4e-04
 Identities = 29/93 (31%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 221 FDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSA---TFDDEHHSTIVST 277
            D L S  ++H   +A  +L S          + D++L DFG A   T      +T V T
Sbjct: 114 LDYLHSEKKIHRDIKAANVLLS---------EQGDVKLADFGVAGQLTDTQIKRNTFVGT 164

Query: 278 RHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
             + APEVI +  +    D+WS+G    EL  G
Sbjct: 165 PFWMAPEVIQQSAYDSKADIWSLGITAIELAKG 197

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 13/32 (40%), Positives = 20/32 (62%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFFDKL 224
              DL+ KML  +P +RI+ +EAL HP+  + 
Sbjct: 273 LAIDLLEKMLVLDPDKRITAAEALAHPYLAEY 304

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 31/86 (36%), Positives = 40/86 (46%), Gaps = 24/86 (27%)

Query: 256 IRLIDFGSA--------TFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFE 306
           I+L DFG A         +  E     V T  YRAPEV+L    ++ P D+WSIG I  E
Sbjct: 140 IKLADFGLARAFGIPVRVYTHE-----VVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAE 194

Query: 307 LYLGITLMARKTKTKYFYHGKLDWDE 332
                  MA K   K  +HG  + D+
Sbjct: 195 -------MATK---KPLFHGDSEIDQ 210

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 21/56 (37%), Positives = 31/56 (55%)

Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           I+L DFG A    +   T+  T  Y APEVI   G  +  D W++G +I+E+ +G 
Sbjct: 140 IKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGY 195

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 4/59 (6%)

Query: 256 IRLIDFGSATFD---DEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           I L DFG +  +   ++  +T   T  Y APEV+L E G+ +  D WS+G ++FE+  G
Sbjct: 135 IALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCG 193

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 13/87 (14%)

Query: 224 LPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAP 283
           L S  R+H   +A  IL +    V         +L DFGSA+     +S  V T ++ AP
Sbjct: 131 LHSHERIHRDIKAGNILLTEPGTV---------KLADFGSASLVSPANS-FVGTPYWMAP 180

Query: 284 EVILELGWAQ---PCDVWSIGCIIFEL 307
           EVIL +   Q     DVWS+G    EL
Sbjct: 181 EVILAMDEGQYDGKVDVWSLGITCIEL 207

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 41.2 bits (96), Expect = 5e-04
 Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 4/62 (6%)

Query: 253 RCDIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELY 308
           + +++L DFG A   +   + +S  V T  YR P+V+L    ++ P D+W +GCI++E+ 
Sbjct: 139 KGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMA 198

Query: 309 LG 310
            G
Sbjct: 199 TG 200

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 40.5 bits (94), Expect = 7e-04
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 12/84 (14%)

Query: 230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFG---SATFDDEHHSTIVSTRHYRAPEVI 286
           +H   ++D +L  +            ++L DFG     T +    ST+V T ++ APEV+
Sbjct: 137 IHRDIKSDNVLLGMDG---------SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVV 187

Query: 287 LELGWAQPCDVWSIGCIIFELYLG 310
               +    D+WS+G +  E+  G
Sbjct: 188 TRKAYGPKVDIWSLGIMAIEMVEG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 40.5 bits (95), Expect = 7e-04
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 256 IRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFEL 307
           ++L DFG A          S    + ++ APEVI + G +    D+WS+GC + E+
Sbjct: 141 VKLADFGMAKQVVEFSFAKS-FKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEM 195

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 14/115 (12%)

Query: 201 MLEYEPSERISLSEALRHPF--FDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRL 258
           +LE  P +   ++  LR      D L S  ++H   +A  +L S            +++L
Sbjct: 92  LLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVLLS---------EHGEVKL 142

Query: 259 IDFGSA---TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            DFG A   T      +T V T  + APEVI +  +    D+WS+G    EL  G
Sbjct: 143 ADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKG 197

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 4/45 (8%)

Query: 180 PERYMASDDEEHR----QLFDLISKMLEYEPSERISLSEALRHPF 220
           P+    S+ E  +    Q  DL+SKML  +P +RIS+ EALRHP+
Sbjct: 273 PDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPY 317

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 13/25 (52%), Positives = 21/25 (84%)

Query: 196 DLISKMLEYEPSERISLSEALRHPF 220
           DL+ K+L ++P++RIS+ EAL HP+
Sbjct: 270 DLLEKLLAFDPTKRISVEEALEHPY 294

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 5/42 (11%)

Query: 275 VSTRHYRAPEVILELG---WAQPCDVWSIGCIIFELYLGITL 313
           V T  YRAPE  L +G   +    D+WS+GCI  EL  G  L
Sbjct: 194 VVTLWYRAPE--LLMGAEKYHFAVDMWSVGCIFAELLTGKPL 233

Length = 335

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 6/80 (7%)

Query: 243 VSSLVMRRVRRCDIRLIDFGSA-TFD--DEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVW 298
           VS+L++    +  +++ DFG A T+    +  +  V T  YRAPE++L    +    D+W
Sbjct: 136 VSNLLL--TDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMW 193

Query: 299 SIGCIIFELYLGITLMARKT 318
           ++GCI+ EL     L+  K+
Sbjct: 194 AVGCILAELLAHKPLLPGKS 213

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 261 FGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           F S T     HS +V T +Y +PE I E G+    D+WS+GC+++E+
Sbjct: 156 FSSKTT--AAHS-LVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 256 IRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           I L DFG       DD+  +T   T  Y APE++L  G+ +  D W++G +++E+  G+
Sbjct: 132 IALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGL 190

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 13/85 (15%)

Query: 230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVI 286
           +H   +A  IL + +  V          L DFG A     +    ST V T ++ APEVI
Sbjct: 123 IHRDIKAANILVTNTGNVK---------LCDFGVAALLNQNSSKRSTFVGTPYWMAPEVI 173

Query: 287 LE-LGWAQPCDVWSIGCIIFELYLG 310
            E   +    D+WS+G  I+E+  G
Sbjct: 174 TEGKYYDTKADIWSLGITIYEMATG 198

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 253 RCDIRLIDFG-SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           R +I+L DFG S    D   ++ V TR Y +PE +    ++   D+WS+G  + E+ +G
Sbjct: 140 RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIG 198

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 28/113 (24%), Positives = 60/113 (53%), Gaps = 5/113 (4%)

Query: 198 ISKMLEYEPSERISLSEALRHPFFDKLPSSVR-VHAQTQADRILSSVSSLVMRR--VRRC 254
           +S+M+++   ++  + E     +F +L S++  +H++    R +   +  +     V+  
Sbjct: 89  LSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLG 148

Query: 255 DIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           D+ L  F S+     H  ++V T +Y +PE I E G+    D+WS+GC+++E+
Sbjct: 149 DLGLGRFFSSKTTAAH--SLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEM 199

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 50/213 (23%)

Query: 116 YLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTR 175
           YL Y  D  R ++ + +     + +  +EV  +  C+I+L+                + R
Sbjct: 19  YLCYDADTGRELAVKQVPFDPDSQETSKEVNALE-CEIQLLK---------------NLR 62

Query: 176 HYRAPERYMASDDEEHRQLFDLISKMLEYEPSERI--------SLSEALRHPFFDK---- 223
           H R  + Y    D E ++L    S  +EY P   I        +L+E +   +  +    
Sbjct: 63  HDRIVQYYGCLRDPEEKKL----SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQG 118

Query: 224 ---LPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSAT------FDDEHHSTI 274
              L S++ VH   +   IL   +          +++L DFG++              ++
Sbjct: 119 VSYLHSNMIVHRDIKGANILRDSAG---------NVKLGDFGASKRIQTICMSGTGIKSV 169

Query: 275 VSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
             T ++ +PEVI   G+ +  DVWS+ C + E+
Sbjct: 170 TGTPYWMSPEVISGEGYGRKADVWSVACTVVEM 202

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 8/68 (11%)

Query: 122 DQVRHMSYQLIYAVDY--------NNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVS 173
           + V+ + YQL+  + Y         + K   V     C++R++DFG A   D+  +  V+
Sbjct: 118 EHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEMTGYVA 177

Query: 174 TRHYRAPE 181
           TR YRAPE
Sbjct: 178 TRWYRAPE 185

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 19/47 (40%), Positives = 31/47 (65%), Gaps = 4/47 (8%)

Query: 180 PERYMASDDEEHR----QLFDLISKMLEYEPSERISLSEALRHPFFD 222
           P+    +D E ++    Q  DL+SKML  +P++RIS+ EAL+HP+ +
Sbjct: 269 PDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYIN 315

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 1/34 (2%)

Query: 275 VSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFEL 307
           + T  YRAPEV+L    ++ P D+WS+GCI  E+
Sbjct: 172 IVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEM 205

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 191 HRQLFDLISKMLEYEPSERISLSEALRHPFF 221
                DL+ ++L+  P  RIS  +AL+HP+F
Sbjct: 254 DPLGIDLLHRLLQLNPELRISAHDALQHPWF 284

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 5/41 (12%)

Query: 185 ASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP 225
           ASDD       DL+  +L+  P ERIS  EAL+H +F   P
Sbjct: 285 ASDDA-----IDLLQSLLKLNPLERISAKEALKHEYFKSDP 320

Length = 335

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 13/26 (50%), Positives = 18/26 (69%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFF 221
           DL+  +L   P +RIS  EAL+HP+F
Sbjct: 259 DLLQNLLVCNPVQRISAEEALQHPYF 284

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 256 IRLIDFGSA------TFDDEH-HSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFEL 307
           ++L DFG A           + ++  V T  YR PE++L E  +  P D+W  GCI+ E+
Sbjct: 158 LKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGCIMAEM 217

Query: 308 YLGITLMARKTKTK 321
           +    +M   T+  
Sbjct: 218 WTRSPIMQGNTEQH 231

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 7/63 (11%)

Query: 260 DFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           DFG A   D H+      S  + T+ YR+P ++L    + +  D+W+ GCI  E+  G  
Sbjct: 158 DFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKP 217

Query: 313 LMA 315
           L A
Sbjct: 218 LFA 220

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 12/90 (13%)

Query: 224 LPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFG---SATFDDEHHSTIVSTRHY 280
           L S+  +H   ++D IL  +            ++L DFG     T +    ST+V T ++
Sbjct: 132 LHSNQVIHRDIKSDNILLGMDG---------SVKLTDFGFCAQITPEQSKRSTMVGTPYW 182

Query: 281 RAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            APEV+    +    D+WS+G +  E+  G
Sbjct: 183 MAPEVVTRKAYGPKVDIWSLGIMAIEMIEG 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 256 IRLIDFGSATF----DDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELY 308
           I+L DFG A      +   ++  V T  YR PE++L E  +    DVWS GCI+ EL+
Sbjct: 155 IKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCILGELF 212

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 39.2 bits (91), Expect = 0.002
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 256 IRLIDFG---SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG      F D   ST   T  Y APE++  L +    D WS G +++E+ +G
Sbjct: 135 IKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIG 192

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 39.3 bits (91), Expect = 0.002
 Identities = 43/213 (20%), Positives = 86/213 (40%), Gaps = 50/213 (23%)

Query: 116 YLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTR 175
           YL Y +D  R ++ + +     + +  +EV  +  C+I+L+                + +
Sbjct: 19  YLCYDVDTGRELAAKQVQFDPESPETSKEVSALE-CEIQLLK---------------NLQ 62

Query: 176 HYRAPERYMASDDEEHRQLFDLISKMLEYEPSERI--------SLSEALRHPF------- 220
           H R  + Y    D   + L    +  +EY P   +        +L+E++   +       
Sbjct: 63  HERIVQYYGCLRDRAEKTL----TIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEG 118

Query: 221 FDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSAT------FDDEHHSTI 274
              L S++ VH   +   IL   +          +++L DFG++              ++
Sbjct: 119 MSYLHSNMIVHRDIKGANILRDSAG---------NVKLGDFGASKRLQTICMSGTGIRSV 169

Query: 275 VSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
             T ++ +PEVI   G+ +  DVWS+GC + E+
Sbjct: 170 TGTPYWMSPEVISGEGYGRKADVWSLGCTVVEM 202

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 10/61 (16%)

Query: 255 DIRLIDFG-----SATFDDEHHSTIVSTRHYRAPEVILEL---GWAQPCDVWSIGCIIFE 306
           D++L DFG     +AT       + + T ++ APEV       G+   CD+W++G    E
Sbjct: 139 DVKLADFGVSAQLTATI--AKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIE 196

Query: 307 L 307
           L
Sbjct: 197 L 197

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 256 IRLIDFGSATFDDEHHSTIVS---TRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I+L DFG +    +H     S   T  Y APEV+   G  Q  D WS G ++FE+  G
Sbjct: 137 IKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 194

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 13/86 (15%)

Query: 230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVI 286
           VH   + D +L +  S V        +++ DFG++      +    T   T  Y APEVI
Sbjct: 130 VHRDIKGDNVLVNTYSGV--------VKISDFGTSKRLAGINPCTETFTGTLQYMAPEVI 181

Query: 287 LE--LGWAQPCDVWSIGCIIFELYLG 310
            +   G+  P D+WS+GC I E+  G
Sbjct: 182 DKGPRGYGAPADIWSLGCTIVEMATG 207

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 252 RRCDIRLIDFG-SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            R  I+L DFG S    +    T V T  Y APE I    ++   D+WS+G  + EL  G
Sbjct: 136 SRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATG 195

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 12/90 (13%)

Query: 224 LPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFG---SATFDDEHHSTIVSTRHY 280
           L S+  +H   ++D IL  +   V         +L DFG     T +    ST+V T ++
Sbjct: 131 LHSNQVIHRDIKSDNILLGMDGSV---------KLTDFGFCAQITPEQSKRSTMVGTPYW 181

Query: 281 RAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            APEV+    +    D+WS+G +  E+  G
Sbjct: 182 MAPEVVTRKAYGPKVDIWSLGIMAIEMVEG 211

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 272 STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +T   T +Y +PE +   G+    D+WS+GCI++E+
Sbjct: 163 TTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEM 198

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFG-SATFDDE--HHSTIVSTRHYRAPEVI 286
           +HAQ    R + S S L+    R   ++L DFG  A    E     ++V T ++ APE+I
Sbjct: 132 LHAQGVIHRDIKSDSILLTHDGR---VKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELI 188

Query: 287 LELGWAQPCDVWSIGCIIFELYLG 310
             L +    D+WS+G ++ E+  G
Sbjct: 189 SRLPYGPEVDIWSLGIMVIEMVDG 212

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFFDKL 224
           Q  DL+ KMLE +  +R++ +EAL HP+FD  
Sbjct: 272 QAVDLLEKMLELDVDKRLTATEALEHPYFDSF 303

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 24/162 (14%)

Query: 24  VALKIIKNVEKYREAA-RL-EINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG 81
            A+K +K   K  E    L EI AL+++    PN   L   + D     G + + FE++ 
Sbjct: 27  YAIKCMKKHFKSLEQVNNLREIQALRRL-SPHPNILRLIEVLFD--RKTGRLALVFELMD 83

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK 141
           +++++ +K     P    +V+   YQL+ +            + HM    I+  D     
Sbjct: 84  MNLYELIKGRKR-PLPEKRVKSYMYQLLKS------------LDHMHRNGIFHRDI---- 126

Query: 142 KREVRRVRRCDIRLIDFGSA--TFDDEHHSTIVSTRHYRAPE 181
           K E   ++   ++L DFGS    +    ++  +STR YRAPE
Sbjct: 127 KPENILIKDDILKLADFGSCRGIYSKPPYTEYISTRWYRAPE 168

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCD 255
            L+ ++L ++P +R +  EAL  P+F  L    R   +  A  I         RR+ + D
Sbjct: 268 RLLERLLAFDPKDRPTAEEALADPYFKGLAKVER---EPSAQPITKLEFEFERRRLTKED 324

Query: 256 IR 257
           +R
Sbjct: 325 VR 326

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 256 IRLIDFG-SATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           I+L DFG S     E     T+V T +Y +PE+   + +    D+W++GC+++EL
Sbjct: 140 IKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYEL 194

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 38/166 (22%), Positives = 66/166 (39%), Gaps = 39/166 (23%)

Query: 165 DEHHSTIVSTRHYRAPERYMASD-DEEHRQLFDLISKMLEYEPSERI--------SLSEA 215
           +  H  IV         +Y+ S  D +H  +F      LEY P   +        +  E 
Sbjct: 62  ELQHENIV---------QYLGSSLDADHLNIF------LEYVPGGSVAALLNNYGAFEET 106

Query: 216 LRHPFFDKLPSSVR-VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTI 274
           L   F  ++   +  +H +    R +   + LV  +     I++ DFG +    E +S  
Sbjct: 107 LVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGG---IKISDFGISK-KLEANSLS 162

Query: 275 VSTRHYR----------APEVILELGWAQPCDVWSIGCIIFELYLG 310
             T   R          APEV+ +  + +  D+WS+GC++ E+  G
Sbjct: 163 TKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLGCLVVEMLTG 208

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 24/59 (40%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 253 RCDIRLIDFG-SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           R  I+L DFG S    +    T V T  Y +PE I    +    DVWS+G  I EL LG
Sbjct: 140 RGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALG 198

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 38.4 bits (89), Expect = 0.003
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 257 RLIDFGSA-TFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +L DFG A   +D  E   T V T +Y +PE+     +    D+WS+GC+++EL
Sbjct: 142 KLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYEL 195

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 256 IRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG    +   +   ST   T  Y APE++    + +  D WS G +++E+ +G
Sbjct: 135 IKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIG 192

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 255 DIRLIDFG-SA--TFDDEHHSTIVSTRHYRAPEVIL-ELGWAQP----CDVWSIGCIIFE 306
           D++L DFG SA      +   T + T ++ APEV+  E     P     D+WS+G  + E
Sbjct: 141 DVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIE 200

Query: 307 L 307
           L
Sbjct: 201 L 201

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 6/37 (16%)

Query: 151 CDIRLIDFGSATFDDEHHSTI------VSTRHYRAPE 181
           CD+++ DFG A   D            V TR YRAPE
Sbjct: 140 CDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPE 176

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEV--ILELGWAQPCDVWSIGCIIFELYLGITL 313
           I+L  F   +  ++          Y APEV  I E   A  CD WS+G I+FEL  G TL
Sbjct: 124 IQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEETEA--CDWWSLGAILFELLTGKTL 181

Query: 314 M 314
           +
Sbjct: 182 V 182

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. RPK118 also binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118 may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Length = 237

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 4/96 (4%)

Query: 214 EALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHH 271
           + + H F   L +   VH +    R L + + L+ +   +  +++ DFG +         
Sbjct: 101 DTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKH--KMVVKIGDFGISKILSSKSKA 158

Query: 272 STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            T+V T  Y +PE+     + Q  D+W++GC+++EL
Sbjct: 159 YTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYEL 194

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 38.3 bits (89), Expect = 0.004
 Identities = 18/55 (32%), Positives = 29/55 (52%)

Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +++ DFG A    +   T+  T  Y APEVI   G  +  D W++G +++E   G
Sbjct: 157 VKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAG 211

Length = 329

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 38.1 bits (88), Expect = 0.004
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 6/84 (7%)

Query: 230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFG-SATFDDE--HHSTIVSTRHYRAPEVI 286
           +H Q    R + S S L+    R   I+L DFG  A    E     ++V T ++ APEVI
Sbjct: 134 LHNQGVIHRDIKSDSILLTSDGR---IKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVI 190

Query: 287 LELGWAQPCDVWSIGCIIFELYLG 310
             L +    D+WS+G ++ E+  G
Sbjct: 191 SRLPYGTEVDIWSLGIMVIEMIDG 214

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	351
KOG0595|consensus	429		100.0
KOG0615|consensus	475		100.0
KOG0575|consensus	592		100.0
KOG0671|consensus	415		100.0
KOG0598|consensus	357		100.0
KOG0667|consensus	586		100.0
KOG0616|consensus	355		100.0
KOG0605|consensus	550		100.0
KOG0600|consensus	560		100.0
KOG0593|consensus	396		100.0
KOG0581|consensus	364		100.0
KOG0591|consensus	375		100.0
KOG0661|consensus	538		100.0
KOG0659|consensus	318		100.0
KOG1290|consensus	590		100.0
KOG0583|consensus	370		100.0
KOG0610|consensus	459		100.0
KOG0597|consensus	808		100.0
KOG0588|consensus	786		100.0
KOG0594|consensus	323		100.0
KOG0592|consensus	604		100.0
KOG0611|consensus	668		100.0
KOG0660|consensus	359		100.0
KOG0663|consensus	419		100.0
KOG0694|consensus	694		100.0
KOG0032|consensus	382		100.0
KOG0198|consensus	313		100.0
KOG0658|consensus	364		100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
KOG0033|consensus	355		100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
KOG0585|consensus	576		100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
KOG4236|consensus	888		100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
KOG0192|consensus	362		100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
KOG0578|consensus	550		100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
KOG0201|consensus	467		100.0
KOG0580|consensus	281		100.0
KOG0599|consensus	411		100.0
KOG0589|consensus	426		100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
KOG0582|consensus	516		100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
KOG0607|consensus	463		100.0
PTZ00284	467	protein kinase; Provisional	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
KOG0197|consensus	468		100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
KOG0662|consensus	292		100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
KOG4717|consensus	864		100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
KOG0604|consensus	400		100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
KOG0574|consensus	502		100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
KOG0586|consensus	596		100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	100.0
KOG0577|consensus	948		100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.98
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.98
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.98
KOG0612|consensus	1317		99.98
KOG4279|consensus	1226		99.98
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.98
KOG4250|consensus	732		99.98
KOG4721|consensus	904		99.98
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.98
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.98
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.98
KOG0690|consensus	516		99.98
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.97
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.97
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.97
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.97
PTZ00036	440	glycogen synthase kinase; Provisional	99.97
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.97
KOG0670|consensus	752		99.97
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.97
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.97
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.97
KOG1152|consensus	772		99.97
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.97
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.97
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.97
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.97
PTZ00267	478	NIMA-related protein kinase; Provisional	99.97
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.97
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.97
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.97
KOG0193|consensus	678		99.97
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.97
KOG1187|consensus	361		99.97
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.97
KOG0696|consensus	683		99.97
KOG0608|consensus	1034		99.97
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.97
PTZ00283	496	serine/threonine protein kinase; Provisional	99.97
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.97
PHA03207	392	serine/threonine kinase US3; Provisional	99.97
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.97
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.97
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.97
PHA02988	283	hypothetical protein; Provisional	99.97
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.97
KOG0614|consensus	732		99.97
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.97
KOG0194|consensus	474		99.97
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.97
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.97
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.97
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.97
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.97
PHA03209	357	serine/threonine kinase US3; Provisional	99.97
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.96
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.96
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.96
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.96
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.96
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.96
KOG0986|consensus	591		99.96
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.96
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.96
KOG0596|consensus	677		99.96
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.96
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.96
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.96
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.96
PHA03211	461	serine/threonine kinase US3; Provisional	99.96
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.96
KOG1026|consensus	774		99.96
KOG1989|consensus	738		99.96
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.96
KOG0579|consensus	1187		99.96
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.96
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.96
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.96
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.96
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.96
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.96
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.96
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.96
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.96
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.96
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.96
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.96
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.96
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.96
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.96
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.96
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.96
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.96
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.96
KOG1151|consensus	775		99.96
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.96
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.96
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.96
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.96
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.96
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.96
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.96
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.96
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.96
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.96
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.96
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.96
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.96
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.96
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.96
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.96
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.96
KOG2345|consensus	302		99.96
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.96
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.96
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.96
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.96
PLN00009	294	cyclin-dependent kinase A; Provisional	99.96
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.96
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.96
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.96
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.96
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.96
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.96
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.96
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.96
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.96
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.96
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.96
KOG0666|consensus	438		99.96
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.96
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.96
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.96
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.96
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.96
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.96
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.96
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.96
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.96
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.96
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.96
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.96
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.96
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.96
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.96
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.96
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.96
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.96
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.96
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.96
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.96
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.96
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.96
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.96
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.96
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.96
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.96
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.96
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.96
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.96
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.96
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.96
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.96
KOG4645|consensus	1509		99.96
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.96
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.96
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.95
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.95
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.95
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.95
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.95
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.95
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.95
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.95
KOG0664|consensus	449		99.95
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.95
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.95
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.95
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.95
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.95
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.95
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.95
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.95
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.95
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.95
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.95
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.95
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.95
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.95
PHA03210	501	serine/threonine kinase US3; Provisional	99.95
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.95
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.95
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.95
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.95
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.95
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.95
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.95
KOG0584|consensus	632		99.95
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.95
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.95
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.95
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.95
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.95
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.95
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.95
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.95
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.95
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.95
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.95
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.95
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.95
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.95
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.95
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.95
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.95
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.95
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.95
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.95
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.95
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.95
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.95
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.95
KOG0983|consensus	391		99.95
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.95
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.95
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.95
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.95
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.95
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.95
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.95
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.95
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.95
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.95
KOG0695|consensus	593		99.95
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.95
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.95
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.95
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.95
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.95
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.95
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.95
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.95
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.95
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.95
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.95
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.95
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.95
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.95
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.95
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.95
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.95
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.95
KOG1095|consensus	1025		99.95
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.95
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.95
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.95
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.95
KOG0669|consensus	376		99.95
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.95
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.95
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.94
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.94
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.94
PHA02882	294	putative serine/threonine kinase; Provisional	99.94
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.94
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.94
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.94
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.94
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.94
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.94
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.94
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.94
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.94
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.94
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.94
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.94
KOG0984|consensus	282		99.94
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.94
KOG0587|consensus	953		99.94
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.94
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.94
KOG4278|consensus	1157		99.94
KOG0603|consensus	612		99.94
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.94
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.94
KOG1006|consensus	361		99.94
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.94
KOG0199|consensus	1039		99.94
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.94
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.93
KOG4257|consensus	974		99.93
KOG1035|consensus	1351		99.93
KOG0576|consensus	829		99.93
KOG0668|consensus	338		99.93
KOG1167|consensus	418		99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
KOG0196|consensus	996		99.92
KOG0665|consensus	369		99.92
KOG1094|consensus	807		99.92
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.91
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.9
KOG1025|consensus	1177		99.9
KOG3653|consensus	534		99.89
KOG1027|consensus	903		99.89
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.89
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.89
KOG1345|consensus	378		99.89
KOG2052|consensus	513		99.88
KOG0200|consensus	609		99.87
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.87
KOG1163|consensus	341		99.86
KOG1164|consensus	322		99.86
KOG1165|consensus	449		99.85
PRK09188	365	serine/threonine protein kinase; Provisional	99.83
PLN00181	793	protein SPA1-RELATED; Provisional	99.82
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.78
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.77
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.75
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.75
KOG0590|consensus	601		99.73
PRK12274	218	serine/threonine protein kinase; Provisional	99.68
PRK10345	210	hypothetical protein; Provisional	99.68
KOG1024|consensus	563		99.68
KOG0606|consensus	1205		99.68
KOG0603|consensus	612		99.66
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.66
smart00090	237	RIO RIO-like kinase.	99.63
PRK14879	211	serine/threonine protein kinase; Provisional	99.59
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.58
KOG1166|consensus	974		99.58
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.55
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.53
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.52
KOG0195|consensus	448		99.51
KOG1240|consensus	1431		99.49
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.45
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.39
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.38
KOG0590|consensus	601		99.36
KOG0661|consensus	538		99.31
KOG1033|consensus	516		99.29
KOG0601|consensus	524		99.27
KOG4158|consensus	598		99.23
KOG0615|consensus	475		99.2
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.08
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.08
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	99.04
KOG0660|consensus	359		99.02
KOG0599|consensus	411		98.99
KOG0575|consensus	592		98.99
KOG0581|consensus	364		98.98
KOG0606|consensus	1205		98.97
KOG1023|consensus	484		98.96
KOG0671|consensus	415		98.94
KOG0578|consensus	550		98.93
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.91
KOG0588|consensus	786		98.9
KOG0033|consensus	355		98.89
KOG3087|consensus	229		98.83
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.79
KOG0667|consensus	586		98.73
KOG0659|consensus	318		98.69
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.68
KOG0596|consensus	677		98.64
KOG0593|consensus	396		98.63
KOG0583|consensus	370		98.62
KOG0663|consensus	419		98.61
KOG0198|consensus	313		98.6
KOG0600|consensus	560		98.59
KOG0616|consensus	355		98.58
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.57
KOG0032|consensus	382		98.57
KOG0579|consensus	1187		98.56
KOG0201|consensus	467		98.53
KOG0594|consensus	323		98.51
KOG1290|consensus	590		98.51
KOG0658|consensus	364		98.51
KOG0604|consensus	400		98.49
KOG0598|consensus	357		98.46
PTZ00284	467	protein kinase; Provisional	98.45
KOG0690|consensus	516		98.45
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	98.45
KOG0694|consensus	694		98.43
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	98.41
PTZ00036	440	glycogen synthase kinase; Provisional	98.38
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	98.36
KOG4279|consensus	1226		98.35
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	98.33
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	98.33
PHA03209	357	serine/threonine kinase US3; Provisional	98.31
PHA03212	391	serine/threonine kinase US3; Provisional	98.31
KOG0592|consensus	604		98.31
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	98.3
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	98.3
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	98.29
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	98.27
KOG4717|consensus	864		98.26
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	98.26
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	98.26
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	98.26
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	98.26
KOG0601|consensus	524		98.25
PTZ00263	329	protein kinase A catalytic subunit; Provisional	98.25
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	98.24
KOG1243|consensus	690		98.23
KOG0582|consensus	516		98.22
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	98.22
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	98.21

>KOG0595|consensus

Probab=100.00  E-value=9.8e-46  Score=334.73  Aligned_cols=203  Identities=22%  Similarity=0.319  Sum_probs=180.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|+++.++..||||.+.+.   ....+....|+.+|+.++|+|      ||+++|..+.++++|||||
T Consensus        16 ~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~n------IV~l~d~~~~~~~i~lVME   89 (429)
T KOG0595|consen   16 REIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPN------IVRLLDCIEDDDFIYLVME   89 (429)
T ss_pred             hhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcc------eeeEEEEEecCCeEEEEEE
Confidence            5799999999999999999999999999764   345677889999999999888      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      || ||||.++|++.+  .+++..++.++.||+.|                       +++||+++|+|||+||.||.|+-
T Consensus        90 yC~gGDLs~yi~~~~--~l~e~t~r~Fm~QLA~a-----------------------lq~L~~~~IiHRDLKPQNiLLs~  144 (429)
T KOG0595|consen   90 YCNGGDLSDYIRRRG--RLPEATARHFMQQLASA-----------------------LQFLHENNIIHRDLKPQNILLST  144 (429)
T ss_pred             eCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeccCCcceEEecc
Confidence            99 999999999986  68999999999999888                       99999999999999999999881


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                 ....                                                                 
T Consensus       145 -----------~~~~-----------------------------------------------------------------  148 (429)
T KOG0595|consen  145 -----------TARN-----------------------------------------------------------------  148 (429)
T ss_pred             -----------CCCC-----------------------------------------------------------------
Confidence                       0000                                                                 


Q ss_pred             hhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   .....+||+|||+++..  .....+.+|+|.|||||++....|..|+|+||+|+++|++++|.+||.
T Consensus       149 -------------~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~~~YdAKADLWSiG~Ilyq~l~g~~Pf~  215 (429)
T KOG0595|consen  149 -------------DTSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEVIMSQQYDAKADLWSIGTILYQCLTGKPPFD  215 (429)
T ss_pred             -------------CCCceEEecccchhhhCCchhHHHHhhCCccccCHHHHHhccccchhhHHHHHHHHHHHHhCCCCcc
Confidence                         00146899999999874  445578999999999999999999999999999999999999999999


Q ss_pred             ccCCCceee
Q psy2006         316 RKTKTKYFY  324 (351)
Q Consensus       316 ~~~~~~~~~  324 (351)
                      ..+..|.+.
T Consensus       216 a~t~~eL~~  224 (429)
T KOG0595|consen  216 AETPKELLL  224 (429)
T ss_pred             ccCHHHHHH
Confidence            999888875

>KOG0615|consensus

Probab=100.00  E-value=5e-44  Score=323.52  Aligned_cols=221  Identities=24%  Similarity=0.355  Sum_probs=186.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh--------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK--------YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~--------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||.|+||.|-+|.++.+|+.||||++.+...        ....+.+|+++|++|+||+      ||+++|+|+..+..
T Consensus       178 ~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~------IV~~~d~f~~~ds~  251 (475)
T KOG0615|consen  178 KTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPN------IVRIKDFFEVPDSS  251 (475)
T ss_pred             eeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCC------EEEEeeeeecCCce
Confidence            579999999999999999999999999976321        2234679999999999988      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ||||||+ ||+|++++...+  .+.++.-|.++.|++.|                       +.|||++||+|||+||+|
T Consensus       252 YmVlE~v~GGeLfd~vv~nk--~l~ed~~K~~f~Qll~a-----------------------vkYLH~~GI~HRDiKPeN  306 (475)
T KOG0615|consen  252 YMVLEYVEGGELFDKVVANK--YLREDLGKLLFKQLLTA-----------------------VKYLHSQGIIHRDIKPEN  306 (475)
T ss_pred             EEEEEEecCccHHHHHHhcc--ccccchhHHHHHHHHHH-----------------------HHHHHHcCcccccCCcce
Confidence            9999999 999999999887  45566667777777766                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.|.+           .                                                               
T Consensus       307 ILl~~-----------~---------------------------------------------------------------  312 (475)
T KOG0615|consen  307 ILLSN-----------D---------------------------------------------------------------  312 (475)
T ss_pred             EEecc-----------C---------------------------------------------------------------
Confidence            99872           0                                                               


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecCCC---CCccceeeeeeeeEee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILELGW---AQPCDVWSIGCIIFEL  307 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~---~~~~DiwslG~~l~~l  307 (351)
                                        ...+.+||+|||++.+.  ..-..+.||||.|.|||++.+.+.   ..++|+||+||++|-+
T Consensus       313 ------------------~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvc  374 (475)
T KOG0615|consen  313 ------------------AEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVLASKGVEYYPSKVDIWSLGCVLFVC  374 (475)
T ss_pred             ------------------CcceEEEecccchhhccccceehhhhcCCccccChhheecCCeecccchheeeeccceEEEE
Confidence                              02478999999999885  556678999999999999987654   4578999999999999


Q ss_pred             ccccccccccCCCce----eeecccCCcccccccccccccCccC
Q psy2006         308 YLGITLMARKTKTKY----FYHGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      ++|.+||.+.....-    +..|++.+....|.  .|++++.+|
T Consensus       375 LsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~--~Iseea~dl  416 (475)
T KOG0615|consen  375 LSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWD--RISEEALDL  416 (475)
T ss_pred             eccCCCcccccCCccHHHHHhcCcccccChhhh--hhhHHHHHH
Confidence            999999999887763    34688777766665  788887765

>KOG0575|consensus

Probab=100.00  E-value=2.4e-43  Score=333.31  Aligned_cols=217  Identities=23%  Similarity=0.345  Sum_probs=187.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecc----hhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKN----VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~----~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+|+.||.+++..+|+.||+|++.+    ....++.+.+||+|.+.|+|+|      ||+++++|++..++|||.
T Consensus        24 ~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~Hpn------IV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   24 RFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPN------IVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             eeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCc------EEeeeeEeecCCceEEEE
Confidence            469999999999999999999999999976    3456788999999999999988      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      |.| .++|..++++.+  .+.|..|+-+++||+.|                       |.|||+.+|+|||+|-+|+.|.
T Consensus        98 ELC~~~sL~el~Krrk--~ltEpEary~l~QIv~G-----------------------lkYLH~~~IiHRDLKLGNlfL~  152 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRK--PLTEPEARYFLRQIVEG-----------------------LKYLHSLGIIHRDLKLGNLFLN  152 (592)
T ss_pred             EecCCccHHHHHHhcC--CCCcHHHHHHHHHHHHH-----------------------HHHHHhcCceecccchhheeec
Confidence            999 899999999765  56666666666666666                       9999999999999999999987


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (592)
T KOG0575|consen  153 --------------------------------------------------------------------------------  152 (592)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ...+|||+|||++....   ....+.||||.|.|||++...+++..+||||+||++|.|++|++|
T Consensus       153 ---------------~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PP  217 (592)
T KOG0575|consen  153 ---------------ENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPP  217 (592)
T ss_pred             ---------------CcCcEEecccceeeeecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCC
Confidence                           34689999999998743   566789999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeeecccCCcccccccccccccCccC
Q psy2006         314 MARKTKTKYFYHGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       314 f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      |...+-.++|..-+.+-..-+.   .+|.+|++|
T Consensus       218 Fetk~vkety~~Ik~~~Y~~P~---~ls~~A~dL  248 (592)
T KOG0575|consen  218 FETKTVKETYNKIKLNEYSMPS---HLSAEAKDL  248 (592)
T ss_pred             cccchHHHHHHHHHhcCccccc---ccCHHHHHH
Confidence            9999888888643332222222   677888776

>KOG0671|consensus

Probab=100.00  E-value=1.2e-42  Score=312.02  Aligned_cols=250  Identities=54%  Similarity=0.927  Sum_probs=218.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      .++|+|+||.|-.+.|++++..||+|++++...+++.+.-|+++|+++.+..|+|...++++.+||+-.+|+|||+|.+|
T Consensus        95 ~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfellG  174 (415)
T KOG0671|consen   95 DLLGEGTFGKVVECWDRETKEHVALKIIKNVDKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELLG  174 (415)
T ss_pred             hhhcCCcccceEEEeecCCCceehHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEeccC
Confidence            57999999999999999999999999999988999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCc
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      .|++++|+..++.++|.+.++.++.||+.+                       +.+||+.+++|.|+||.||.+++    
T Consensus       175 ~S~~dFlk~N~y~~fpi~~ir~m~~QL~~s-----------------------v~fLh~~kl~HTDLKPENILfvs----  227 (415)
T KOG0671|consen  175 LSTFDFLKENNYIPFPIDHIRHMGYQLLES-----------------------VAFLHDLKLTHTDLKPENILFVS----  227 (415)
T ss_pred             hhHHHHhccCCccccchHHHHHHHHHHHHH-----------------------HHHHHhcceeecCCChheEEEec----
Confidence            999999999999999999999999999999                       99999999999999999999983    


Q ss_pred             ccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhc
Q psy2006         162 TFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (351)
                             +...-++.+.   ..                                                     ...  
T Consensus       228 -------s~~~~~~~~k---~~-----------------------------------------------------~~~--  242 (415)
T KOG0671|consen  228 -------SEYFKTYNPK---KK-----------------------------------------------------VCF--  242 (415)
T ss_pred             -------cceEEEeccC---Cc-----------------------------------------------------cce--
Confidence                   1110000000   00                                                     000  


Q ss_pred             cchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCCCc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                            ........|+++|||.+++.....++.+.|..|+|||++++.+++.+.|+||+||+|+|+.||..+|.+.++.|
T Consensus       243 ------~r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~E  316 (415)
T KOG0671|consen  243 ------IRPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLE  316 (415)
T ss_pred             ------eccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHH
Confidence                  00113568999999999998888889999999999999999999999999999999999999999999987433


Q ss_pred             ------------------------eeeecccCCccccccc--ccccccCccCCC
Q psy2006         322 ------------------------YFYHGKLDWDEKGTAG--RYVRENCKPLHH  349 (351)
Q Consensus       322 ------------------------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  349 (351)
                                              +|..|.++|++.+..+  ++|.+.||+|+.
T Consensus       317 HLaMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~  370 (415)
T KOG0671|consen  317 HLAMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKK  370 (415)
T ss_pred             HHHHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHH
Confidence                                    5567899999999877  999999999874

>KOG0598|consensus

Probab=100.00  E-value=1.1e-42  Score=312.03  Aligned_cols=198  Identities=24%  Similarity=0.369  Sum_probs=174.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||.|+||+||.++.+.+++.||+|++++..    ...+.+..|.+||+.++|+.      ||.+...|++.+++|||
T Consensus        30 lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPF------iv~l~ysFQt~~kLylV  103 (357)
T KOG0598|consen   30 LKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPF------IVKLIYSFQTEEKLYLV  103 (357)
T ss_pred             eeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCc------EeeeEEecccCCeEEEE
Confidence            478999999999999999999999999998753    34567889999999999988      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      +||+ ||.|+-.|++.+  .++|+.|+-++..|+.|                       |.|||++||+|||+||+||+|
T Consensus       104 ld~~~GGeLf~hL~~eg--~F~E~~arfYlaEi~lA-----------------------L~~LH~~gIiyRDlKPENILL  158 (357)
T KOG0598|consen  104 LDYLNGGELFYHLQREG--RFSEDRARFYLAEIVLA-----------------------LGYLHSKGIIYRDLKPENILL  158 (357)
T ss_pred             EeccCCccHHHHHHhcC--CcchhHHHHHHHHHHHH-----------------------HHHHHhCCeeeccCCHHHeee
Confidence            9999 999999999876  46666666555555555                       999999999999999999998


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       159 d-------------------------------------------------------------------------------  159 (357)
T KOG0598|consen  159 D-------------------------------------------------------------------------------  159 (357)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            7                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.++|+|||+|...   .....+.+||+.|||||++.+.+++..+|+||||+++|+|++|.+
T Consensus       160 ----------------~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~p  223 (357)
T KOG0598|consen  160 ----------------EQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKP  223 (357)
T ss_pred             ----------------CCCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCC
Confidence                            3578999999999852   234456899999999999999999999999999999999999999


Q ss_pred             cccccCCCceee
Q psy2006         313 LMARKTKTKYFY  324 (351)
Q Consensus       313 pf~~~~~~~~~~  324 (351)
                      ||.+.+..+.+.
T Consensus       224 PF~~~~~~~~~~  235 (357)
T KOG0598|consen  224 PFYAEDVKKMYD  235 (357)
T ss_pred             CCcCccHHHHHH
Confidence            999999777664

>KOG0667|consensus

Probab=100.00  E-value=1.2e-41  Score=324.72  Aligned_cols=207  Identities=32%  Similarity=0.575  Sum_probs=193.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++.||.|+||.|-+|.|.++++.||||++++..........|+.+|..|+...+.+..|||+++|+|...+|+|||+|.+
T Consensus       191 ~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~HlciVfELL  270 (586)
T KOG0667|consen  191 LEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNKKRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCIVFELL  270 (586)
T ss_pred             EEEecccccceeEEEEecCCCcEEEEEeeccChHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceeeeehhh
Confidence            36799999999999999999999999999998888888899999999998555567888999999999999999999999


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      ..+|.++++.....+++...++.++.|++.+                       |.+||+.+|||.|+||+||+|.|-  
T Consensus       271 ~~NLYellK~n~f~Glsl~~ir~~~~Qil~~-----------------------L~~L~~l~IIHcDLKPENILL~~~--  325 (586)
T KOG0667|consen  271 STNLYELLKNNKFRGLSLPLVRKFAQQILTA-----------------------LLFLHELGIIHCDLKPENILLKDP--  325 (586)
T ss_pred             hhhHHHHHHhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeeccCChhheeeccC--
Confidence            9999999999998899999999999999999                       999999999999999999999951  


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       326 --------------------------------------------------------------------------------  325 (586)
T KOG0667|consen  326 --------------------------------------------------------------------------------  325 (586)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCCC
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKT  320 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~  320 (351)
                                 .++.|||+|||++.+......+.+.+..|+|||+++|.+|+.+.|||||||+++||.+|.++|.|.+..
T Consensus       326 -----------~r~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEVILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~ne~  394 (586)
T KOG0667|consen  326 -----------KRSRIKVIDFGSSCFESQRVYTYIQSRFYRAPEVILGLPYDTAIDMWSLGCILAELFTGEPLFPGDNEY  394 (586)
T ss_pred             -----------CcCceeEEecccccccCCcceeeeeccccccchhhccCCCCCccceeehhhhHHhHhcCccccCCCCHH
Confidence                       246899999999999888888889999999999999999999999999999999999999999999988


Q ss_pred             cee
Q psy2006         321 KYF  323 (351)
Q Consensus       321 ~~~  323 (351)
                      +.+
T Consensus       395 DQl  397 (586)
T KOG0667|consen  395 DQL  397 (586)
T ss_pred             HHH
Confidence            876

>KOG0616|consensus

Probab=100.00  E-value=1.8e-41  Score=295.41  Aligned_cols=215  Identities=21%  Similarity=0.364  Sum_probs=189.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++-||.|+||+|-+++.+.+|.+||+|++++..    ...+++.+|.++|+.+.|+.      ++.|+..|.+.++++||
T Consensus        49 ~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PF------lv~l~~t~~d~~~lymv  122 (355)
T KOG0616|consen   49 LKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPF------LVKLYGTFKDNSNLYMV  122 (355)
T ss_pred             eeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCce------eEEEEEeeccCCeEEEE
Confidence            356999999999999999999999999998753    45677889999999999888      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ ||.|+.++++.+  ++++..++-++.|++.|                       |+|||+.++++||+||+|++|
T Consensus       123 meyv~GGElFS~Lrk~~--rF~e~~arFYAAeivlA-----------------------leylH~~~iiYRDLKPENiLl  177 (355)
T KOG0616|consen  123 MEYVPGGELFSYLRKSG--RFSEPHARFYAAEIVLA-----------------------LEYLHSLDIIYRDLKPENLLL  177 (355)
T ss_pred             EeccCCccHHHHHHhcC--CCCchhHHHHHHHHHHH-----------------------HHHHHhcCeeeccCChHHeee
Confidence            9999 999999999986  56666666666666555                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       178 D-------------------------------------------------------------------------------  178 (355)
T KOG0616|consen  178 D-------------------------------------------------------------------------------  178 (355)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            7                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                      ..+.+||+|||++........+.||||.|+|||++...+++.++|+|+||+++|||+.|.+||.
T Consensus       179 ----------------~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~  242 (355)
T KOG0616|consen  179 ----------------QNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFY  242 (355)
T ss_pred             ----------------cCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCc
Confidence                            4678999999999988777888999999999999999999999999999999999999999999


Q ss_pred             ccCCCceee---ecccCCcccccccccccccCccC
Q psy2006         316 RKTKTKYFY---HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       316 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      ..+..++|.   +|++.|+.      +++.++|+|
T Consensus       243 ~~~~~~iY~KI~~~~v~fP~------~fs~~~kdL  271 (355)
T KOG0616|consen  243 DDNPIQIYEKILEGKVKFPS------YFSSDAKDL  271 (355)
T ss_pred             CCChHHHHHHHHhCcccCCc------ccCHHHHHH
Confidence            999988875   67777764      455555554

>KOG0605|consensus

Probab=100.00  E-value=2.7e-41  Score=314.92  Aligned_cols=261  Identities=22%  Similarity=0.309  Sum_probs=185.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      |..||+||||.||+|+-+.+|++||+|+++++.    ...+++..|-++|....++.      ||+|+-.|.+..++|||
T Consensus       146 Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~------vVKLyYsFQD~~~LYLi  219 (550)
T KOG0605|consen  146 LKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPW------VVKLYYSFQDKEYLYLI  219 (550)
T ss_pred             heeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCc------EEEEEEEecCCCeeEEE
Confidence            468999999999999999999999999998764    45678899999999977666      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC---
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD---  152 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n---  152 (351)
                      |||+ |||+..+|.+.+  .++                       ++.++.|+.+++.|++-+|+.|++||||||.|   
T Consensus       220 MEylPGGD~mTLL~~~~--~L~-----------------------e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLi  274 (550)
T KOG0605|consen  220 MEYLPGGDMMTLLMRKD--TLT-----------------------EDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLI  274 (550)
T ss_pred             EEecCCccHHHHHHhcC--cCc-----------------------hHHHHHHHHHHHHHHHHHHHcCcccccCChhheee
Confidence            9999 999999999987  344                       55555555555555999999999999999876   


Q ss_pred             -----eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         153 -----IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       153 -----i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                           ++|+|||+|......+....    |. -+..          ....+   -...|.++++..    .        .
T Consensus       275 D~~GHiKLSDFGLs~gl~~~~~~~~----~~-~~~~----------~~~~~---~~~~~~~~~~~~----~--------~  324 (550)
T KOG0605|consen  275 DAKGHIKLSDFGLSTGLDKKHRIES----YR-LDEQ----------MQINL---SEAKPSDFPKFN----T--------P  324 (550)
T ss_pred             cCCCCEeeccccccchhhhhhhhhh----hc-chhh----------hhhhh---ccCCCccccccc----c--------c
Confidence                 69999999965433322100    00 0000          00000   000111111100    0        0


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                      .....+...-..|           ...            ......+.+|||-|+|||++.+.+|+...|+|||||++|||
T Consensus       325 ~~~~~~~~~~~~w-----------~~n------------rr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEm  381 (550)
T KOG0605|consen  325 RSTMSRREQLQTW-----------KRN------------RRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEM  381 (550)
T ss_pred             cchhhHHHHHHHH-----------Hhh------------hhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHH
Confidence            0000000000000           000            11123457999999999999999999999999999999999


Q ss_pred             ccccccccccCCCceee---ecccCCcccccccccccccCccC
Q psy2006         308 YLGITLMARKTKTKYFY---HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      +.|.+||.+.+..+++.   +++..|......  .++++|+||
T Consensus       382 LvGyPPF~s~tp~~T~rkI~nwr~~l~fP~~~--~~s~eA~DL  422 (550)
T KOG0605|consen  382 LVGYPPFCSETPQETYRKIVNWRETLKFPEEV--DLSDEAKDL  422 (550)
T ss_pred             HhCCCCCCCCCHHHHHHHHHHHhhhccCCCcC--cccHHHHHH
Confidence            99999999999999985   566666666555  677888886

>KOG0600|consensus

Probab=100.00  E-value=6.3e-41  Score=310.16  Aligned_cols=199  Identities=22%  Similarity=0.402  Sum_probs=173.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~~l   75 (351)
                      |++||+|+||.||+|++..+|+.||+|.+..+.   .....+.+||.||++|.|+|      |++|.+.....  +.+||
T Consensus       122 i~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpN------IikL~eivt~~~~~siYl  195 (560)
T KOG0600|consen  122 IEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPN------IIKLEEIVTSKLSGSIYL  195 (560)
T ss_pred             HHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCc------ccceeeEEEecCCceEEE
Confidence            578999999999999999999999999997653   34457789999999999988      99999999987  59999


Q ss_pred             EEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          76 AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |+|||..||.-++..-. +.|.+.++|.+|.||+.|                       |+|||++||+|||||.+||.|
T Consensus       196 VFeYMdhDL~GLl~~p~-vkft~~qIKc~mkQLl~G-----------------------l~~cH~~gvlHRDIK~SNiLi  251 (560)
T KOG0600|consen  196 VFEYMDHDLSGLLSSPG-VKFTEPQIKCYMKQLLEG-----------------------LEYCHSRGVLHRDIKGSNILI  251 (560)
T ss_pred             EEecccchhhhhhcCCC-cccChHHHHHHHHHHHHH-----------------------HHHHhhcCeeeccccccceEE
Confidence            99999999999887654 566777777777777666                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       252 d-------------------------------------------------------------------------------  252 (560)
T KOG0600|consen  252 D-------------------------------------------------------------------------------  252 (560)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG  310 (351)
                                      ..+.+||+|||++++...    ..+..+-|.+|+|||+++|. .|+.++|+||+||++.||.+|
T Consensus       253 ----------------n~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t~Yg~aVDlWS~GCIl~El~~g  316 (560)
T KOG0600|consen  253 ----------------NNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGATSYGTAVDLWSVGCILAELFLG  316 (560)
T ss_pred             ----------------CCCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCcccccceeehhhhHHHHHHHcC
Confidence                            467899999999986332    34667889999999999985 689999999999999999999


Q ss_pred             cccccccCCCceee
Q psy2006         311 ITLMARKTKTKYFY  324 (351)
Q Consensus       311 ~~pf~~~~~~~~~~  324 (351)
                      ++.|.+.+..+.+.
T Consensus       317 kPI~~G~tEveQl~  330 (560)
T KOG0600|consen  317 KPILQGRTEVEQLH  330 (560)
T ss_pred             CCCcCCccHHHHHH
Confidence            99999999888763

>KOG0593|consensus

Probab=100.00  E-value=3e-41  Score=294.75  Aligned_cols=199  Identities=24%  Similarity=0.398  Sum_probs=178.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      |.++|+|+||+||+|+++.+|+.||||++..++   ...+-+.+|+++|++|.|+|      +|.|+++|...+.++||+
T Consensus         7 LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~N------LVnLiEVFrrkrklhLVF   80 (396)
T KOG0593|consen    7 LGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHEN------LVNLIEVFRRKRKLHLVF   80 (396)
T ss_pred             hhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccch------HHHHHHHHHhcceeEEEe
Confidence            357999999999999999999999999997543   23456789999999999988      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |||..++.+-+.+.. .++|.+.++.++.|++.|                       +.|||+.+++|||+||.||.++ 
T Consensus        81 E~~dhTvL~eLe~~p-~G~~~~~vk~~l~Q~l~a-----------------------i~~cHk~n~IHRDIKPENILit-  135 (396)
T KOG0593|consen   81 EYCDHTVLHELERYP-NGVPSELVKKYLYQLLKA-----------------------IHFCHKNNCIHRDIKPENILIT-  135 (396)
T ss_pred             eecchHHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------hhhhhhcCeecccCChhheEEe-
Confidence            999999999998886 478999999999999998                       9999999999999999999988 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (396)
T KOG0593|consen  136 --------------------------------------------------------------------------------  135 (396)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ..+.+||||||+++...   ..-+..+.|.||+|||++.+ .+|+.++|||++||++.||++|+++
T Consensus       136 --------------~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL  201 (396)
T KOG0593|consen  136 --------------QNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPL  201 (396)
T ss_pred             --------------cCCcEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCCCcccchhhhHHHHHHhcCCcC
Confidence                          35789999999998743   22345788999999999998 7899999999999999999999999


Q ss_pred             ccccCCCceee
Q psy2006         314 MARKTKTKYFY  324 (351)
Q Consensus       314 f~~~~~~~~~~  324 (351)
                      |.|.++-+.++
T Consensus       202 ~PG~SDiDQLy  212 (396)
T KOG0593|consen  202 WPGRSDIDQLY  212 (396)
T ss_pred             CCCcchHHHHH
Confidence            99999888765

>KOG0581|consensus

Probab=100.00  E-value=1.8e-39  Score=291.44  Aligned_cols=191  Identities=20%  Similarity=0.284  Sum_probs=171.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEec--chhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-eEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIK--NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-HMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~--~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-~~~lV~   77 (351)
                      +..||+|+.|+||+++++.+++.+|+|++.  .++..++.+.+|+++++...|++      ||..++.|..++ .++|+|
T Consensus        84 ~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spy------IV~~ygaF~~~~~~isI~m  157 (364)
T KOG0581|consen   84 LGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPY------IVGFYGAFYSNGEEISICM  157 (364)
T ss_pred             hhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCC------eeeEeEEEEeCCceEEeeh
Confidence            356999999999999999999999999994  34566788899999999998777      999999999999 599999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeEE
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIRL  155 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~l  155 (351)
                      ||| +|||.++++..+  ++||..+-+++.+++.|                       |.|||. ++|+|||+||.|+.+
T Consensus       158 EYMDgGSLd~~~k~~g--~i~E~~L~~ia~~VL~G-----------------------L~YLh~~~~IIHRDIKPsNlLv  212 (364)
T KOG0581|consen  158 EYMDGGSLDDILKRVG--RIPEPVLGKIARAVLRG-----------------------LSYLHEERKIIHRDIKPSNLLV  212 (364)
T ss_pred             hhcCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHhhccCeeeccCCHHHeee
Confidence            999 999999998874  67888877777777777                       999995 999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       213 N-------------------------------------------------------------------------------  213 (364)
T KOG0581|consen  213 N-------------------------------------------------------------------------------  213 (364)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcce-eccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATF-DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                      ..+.|||+|||.+.. .+....+.+||..|||||.+.+..|+.++||||||++++|+++|++||
T Consensus       214 ----------------skGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~  277 (364)
T KOG0581|consen  214 ----------------SKGEVKICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPY  277 (364)
T ss_pred             ----------------cCCCEEeccccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCC
Confidence                            468899999999876 344568899999999999999999999999999999999999999999


Q ss_pred             ccc
Q psy2006         315 ARK  317 (351)
Q Consensus       315 ~~~  317 (351)
                      ...
T Consensus       278 ~~~  280 (364)
T KOG0581|consen  278 PPP  280 (364)
T ss_pred             CCc
Confidence            885

>KOG0591|consensus

Probab=100.00  E-value=2.3e-41  Score=292.86  Aligned_cols=195  Identities=22%  Similarity=0.257  Sum_probs=170.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeee-eEeeCCe-EEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLD-WFDYHGH-MCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~-~f~~~~~-~~l   75 (351)
                      +++||.|+||+||++.+..+|+.||.|.+.-.   ...++....|+.+|++|+|+|      ||+.++ .|..+.. ++|
T Consensus        24 l~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpN------IVqYy~~~f~~~~evlni   97 (375)
T KOG0591|consen   24 LKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPN------IVQYYAHSFIEDNEVLNI   97 (375)
T ss_pred             HHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCch------HHHHHHHhhhccchhhHH
Confidence            36899999999999999999999999999632   345667788999999999988      999999 7777776 999


Q ss_pred             EEecc-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc--cc--cccccc
Q psy2006          76 AFEIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK--KK--REVRRV  148 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~--~~--i~h~d~  148 (351)
                      |||+| +|||.+.++..  ....+||..|++++.|++.|                       |..||+  ..  |+|||+
T Consensus        98 vmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~A-----------------------L~~cH~~~~r~~VmHRDI  154 (375)
T KOG0591|consen   98 VMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRA-----------------------LYHCHSKIPRGTVMHRDI  154 (375)
T ss_pred             HHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHH-----------------------HHHHhccccccceeeccC
Confidence            99999 99999999876  33467888888888888888                       999998  45  899999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      ||.||.|.                                                                        
T Consensus       155 KPaNIFl~------------------------------------------------------------------------  162 (375)
T KOG0591|consen  155 KPANIFLT------------------------------------------------------------------------  162 (375)
T ss_pred             cchheEEc------------------------------------------------------------------------
Confidence            99999987                                                                        


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeE
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~  305 (351)
                                             ..+.|||+|||++++...   -..+.+|||.||+||.+.+.+|+.++||||+||++|
T Consensus       163 -----------------------~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE~i~~~~Y~~kSDiWslGClly  219 (375)
T KOG0591|consen  163 -----------------------ANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPERIHESGYNFKSDIWSLGCLLY  219 (375)
T ss_pred             -----------------------CCCceeeccchhHhHhcchhHHHHhhcCCCcccCHHHHhcCCCCcchhHHHHHHHHH
Confidence                                   357899999999987433   335789999999999999999999999999999999


Q ss_pred             eeccccccccccCC
Q psy2006         306 ELYLGITLMARKTK  319 (351)
Q Consensus       306 ~l~tG~~pf~~~~~  319 (351)
                      ||+.-++||.+++=
T Consensus       220 EMcaL~~PF~g~n~  233 (375)
T KOG0591|consen  220 EMCALQSPFYGDNL  233 (375)
T ss_pred             HHHhcCCCcccccH
Confidence            99999999999853

>KOG0661|consensus

Probab=100.00  E-value=2.7e-39  Score=297.47  Aligned_cols=196  Identities=24%  Similarity=0.366  Sum_probs=170.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHH--HHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCC-eEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREA--ARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHG-HMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~--~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~-~~~lV   76 (351)
                      +++||.|.||+||+|+.+++++.||||.+++.-...++  -.||++.|++|. |+|      ||.|.+++.+++ ++++|
T Consensus        15 i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpn------iikL~Evi~d~~~~L~fV   88 (538)
T KOG0661|consen   15 IRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPN------IIKLKEVIRDNDRILYFV   88 (538)
T ss_pred             HHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCc------chhhHHHhhccCceEeee
Confidence            47899999999999999999999999999865322232  368999999998 666      999999999999 99999


Q ss_pred             EeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe---
Q psy2006          77 FEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI---  153 (351)
Q Consensus        77 ~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni---  153 (351)
                      ||||..+|+++|+.+ ...|++..++.|+.||+.|                       |+|+|.+|+.|||+||+||   
T Consensus        89 fE~Md~NLYqLmK~R-~r~fse~~irnim~QilqG-----------------------L~hiHk~GfFHRDlKPENiLi~  144 (538)
T KOG0661|consen   89 FEFMDCNLYQLMKDR-NRLFSESDIRNIMYQILQG-----------------------LAHIHKHGFFHRDLKPENILIS  144 (538)
T ss_pred             HHhhhhhHHHHHhhc-CCcCCHHHHHHHHHHHHHH-----------------------HHHHHhcCcccccCChhheEec
Confidence            999999999999998 4789999999999999988                       9999999999999999885   


Q ss_pred             -----EEeecCCccc--CCCCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         154 -----RLIDFGSATF--DDEHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       154 -----~l~Dfg~s~~--~~~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                           ||+|||+|++  ...+.+.+..|.||+|||.+...                                        
T Consensus       145 ~~~~iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~wA~GcI~aEl~sLrPLFPG~sE~Dqi~KIc~  224 (538)
T KOG0661|consen  145 GNDVIKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDMWAVGCIMAELYSLRPLFPGASEIDQIYKICE  224 (538)
T ss_pred             ccceeEecccccccccccCCCcchhhhcccccchHHhhhccccCCchHHHHHHHHHHHHHHhcccCCCCcHHHHHHHHHH
Confidence                 8889999987  56778889999999999954321                                        


Q ss_pred             -----------------------------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         187 -----------------------------------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       187 -----------------------------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                                                         .+..+.++.++|.+||.|||++||||+++|+||||+....
T Consensus       225 VLGtP~~~~~~eg~~La~~mnf~~P~~~~~~l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~pffq~~~~  299 (538)
T KOG0661|consen  225 VLGTPDKDSWPEGYNLASAMNFRFPQVKPSPLKDLLPNASSEAASLIERLLAWDPDKRPTASQALQHPFFQVGRA  299 (538)
T ss_pred             HhCCCccccchhHHHHHHHhccCCCcCCCCChHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcCcccccccc
Confidence                                               1124467889999999999999999999999999976443

>KOG0659|consensus

Probab=100.00  E-value=1.6e-39  Score=279.34  Aligned_cols=215  Identities=23%  Similarity=0.364  Sum_probs=182.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhh---hHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKY---REAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~---~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||+|+||.||+|++.++|+.||||.++..+..   ...+.+||+.|+.+.|+|      |+.|+|+|...+.+-||+
T Consensus         7 ~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~n------Ii~LiD~F~~~~~l~lVf   80 (318)
T KOG0659|consen    7 LEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPN------IIELIDVFPHKSNLSLVF   80 (318)
T ss_pred             hhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcc------hhhhhhhccCCCceEEEE
Confidence            46899999999999999999999999999865322   457899999999999888      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||+..+|...++... +.+....++.++.+++.|                       ++|||++.|+|||+||.|+.++ 
T Consensus        81 Efm~tdLe~vIkd~~-i~l~pa~iK~y~~m~LkG-----------------------l~y~H~~~IlHRDlKPnNLLis-  135 (318)
T KOG0659|consen   81 EFMPTDLEVVIKDKN-IILSPADIKSYMLMTLKG-----------------------LAYCHSKWILHRDLKPNNLLIS-  135 (318)
T ss_pred             EeccccHHHHhcccc-cccCHHHHHHHHHHHHHH-----------------------HHHHHhhhhhcccCCccceEEc-
Confidence            999999999998876 567777778877777777                       9999999999999999999887 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (318)
T KOG0659|consen  136 --------------------------------------------------------------------------------  135 (318)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecccc---ccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH---STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~---~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ..+.+||+|||+++....+.   ...+-|.+|+|||+++| +.|+..+|+||+||++.||+.|.+.
T Consensus       136 --------------~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~  201 (318)
T KOG0659|consen  136 --------------SDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPF  201 (318)
T ss_pred             --------------CCCcEEeecccchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCC
Confidence                          35789999999998754333   23467899999999998 4689999999999999999999999


Q ss_pred             ccccCCCceee-----ecc---cCCcccccccccc
Q psy2006         314 MARKTKTKYFY-----HGK---LDWDEKGTAGRYV  340 (351)
Q Consensus       314 f~~~~~~~~~~-----~~~---~~~~~~~~~~~~~  340 (351)
                      |.|.++-+.+.     -|.   -.|++-..+.+|+
T Consensus       202 fpG~sDidQL~~If~~LGTP~~~~WP~~~~lpdY~  236 (318)
T KOG0659|consen  202 FPGDSDIDQLSKIFRALGTPTPDQWPEMTSLPDYV  236 (318)
T ss_pred             CCCCchHHHHHHHHHHcCCCCcccCccccccccHH
Confidence            99999888763     122   2566666655554

>KOG1290|consensus

Probab=100.00  E-value=2.1e-38  Score=292.05  Aligned_cols=299  Identities=26%  Similarity=0.399  Sum_probs=200.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCC--CCcceeeeeeeEeeCC----eEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPN--GRHLCVKMLDWFDYHG----HMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~--g~~~Iv~l~~~f~~~~----~~~   74 (351)
                      .+|||=|.|+|||+|-|.+.+++||+||++.++.+.+.+..||++|++++..+|+  |+..||+|+|.|...+    |+|
T Consensus        83 ~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVC  162 (590)
T KOG1290|consen   83 QRKLGWGHFSTVWLAWDTQNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVC  162 (590)
T ss_pred             EEeccccccceeEEEeeccCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEE
Confidence            3799999999999999999999999999999999999999999999999876643  8889999999999877    999


Q ss_pred             EEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCe
Q psy2006          75 IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni  153 (351)
                      ||+|++|.+|..+|+...+.++|...||.|++|++.|                       |+|||++ ||+|.|+||.||
T Consensus       163 MVfEvLGdnLLklI~~s~YrGlpl~~VK~I~~qvL~G-----------------------LdYLH~ecgIIHTDlKPENv  219 (590)
T KOG1290|consen  163 MVFEVLGDNLLKLIKYSNYRGLPLSCVKEICRQVLTG-----------------------LDYLHRECGIIHTDLKPENV  219 (590)
T ss_pred             EEehhhhhHHHHHHHHhCCCCCcHHHHHHHHHHHHHH-----------------------HHHHHHhcCccccCCCccee
Confidence            9999999999999999999999999999999999999                       9999975 899999999999


Q ss_pred             EEeecCC--cccCCCCcccccCCCCccCCccccCCCh--------hhHHHHHHHHHHhhcc-------------------
Q psy2006         154 RLIDFGS--ATFDDEHHSTIVSTRHYRAPERYMASDD--------EEHRQLFDLISKMLEY-------------------  204 (351)
Q Consensus       154 ~l~Dfg~--s~~~~~~~~~~~~~~~~~~pe~~~~~~~--------~~~~~~~~~i~~~L~~-------------------  204 (351)
                      .|+-=.+  ++....- ........-..|........        ..+-.....+++.++.                   
T Consensus       220 Ll~~~e~~~~~~~~~a-~e~~~~~p~~s~s~~~t~~d~~~~~~~~~~s~~~~k~~~kk~~r~~~~~~~~l~~~~~~~~~~  298 (590)
T KOG1290|consen  220 LLCSTEIDPAKDAREA-GEATTSLPKMSPSAVSTRPDALQRMAAEPMSKSKFKKMKKKLKRQAKKLEASLAGLEGIEEEP  298 (590)
T ss_pred             eeeccccchhhhhhhh-ccccccCCCCCcccccccccccchhhccccchhhHHHHHHHHhhhhhhhhhhhcccccccccc
Confidence            8873211  1110000 00000000111121111100        0000111111111110                   


Q ss_pred             -----CCCCC----------CChhhhh-cCCCCCCCCchh----------------hhcccchhhhhh-----------c
Q psy2006         205 -----EPSER----------ISLSEAL-RHPFFDKLPSSV----------------RVHAQTQADRIL-----------S  241 (351)
Q Consensus       205 -----~p~~R----------~t~~e~l-~~~~~~~~~~~~----------------~~~~~~~~~~~~-----------~  241 (351)
                           +...|          .+..+.- .+-.-..+....                +...........           .
T Consensus       299 ~~~s~n~~~~~n~~~~~v~~~~~~~~~~~~~~~~n~~~k~~e~~~~~~~sl~~~~~~~~~t~~~~~~~s~~s~~~~~~n~  378 (590)
T KOG1290|consen  299 NQESYNNEPRINGNESTVERSTLEEDSNENGNRENLPIKSPENFRGNNTSLPESQLRDSATPSDGSLSSPSSPGTIASNP  378 (590)
T ss_pred             cccccccccCCCccccchhhcccccccccccCCccccccCccccccccccccchhcccccccccccccCcCCcccccccc
Confidence                 00111          1111000 000000000000                000000000000           0


Q ss_pred             cchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCCCc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                      ..++......+...|||+|||.+.-.....+.-+.|..|+|||++++.+|++.+||||++|++|||+||.++|+++.+..
T Consensus       379 ~v~p~~~~~~~di~vKIaDlGNACW~~khFT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~  458 (590)
T KOG1290|consen  379 LVNPDIPLPECDIRVKIADLGNACWVHKHFTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGEN  458 (590)
T ss_pred             ccCCCCCCCccceeEEEeeccchhhhhhhhchhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCC
Confidence            11111122334557899999998776767777888999999999999999999999999999999999999999998887


Q ss_pred             ee
Q psy2006         322 YF  323 (351)
Q Consensus       322 ~~  323 (351)
                      |-
T Consensus       459 Y~  460 (590)
T KOG1290|consen  459 YS  460 (590)
T ss_pred             CC
Confidence            54

>KOG0583|consensus

Probab=100.00  E-value=3.4e-39  Score=303.58  Aligned_cols=198  Identities=25%  Similarity=0.389  Sum_probs=173.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----h--hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----E--KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~--~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+|++|.+..+++.||+|++.+.    .  ...+.+.+|+.+|+.+. |+|      |+++++++....+++
T Consensus        23 ~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~Hpn------I~~l~ev~~t~~~~~   96 (370)
T KOG0583|consen   23 RTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPN------IIRLLEVFATPTKIY   96 (370)
T ss_pred             eeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCC------EeEEEEEEecCCeEE
Confidence            5799999999999999999999999988753    1  23456678999999998 777      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||| ||+|++++...+  ++.|..++.+++|++.|                       ++|||++||+|||+|++|+
T Consensus        97 ivmEy~~gGdL~~~i~~~g--~l~E~~ar~~F~Qlisa-----------------------v~y~H~~gi~HRDLK~ENi  151 (370)
T KOG0583|consen   97 IVMEYCSGGDLFDYIVNKG--RLKEDEARKYFRQLISA-----------------------VAYCHSRGIVHRDLKPENI  151 (370)
T ss_pred             EEEEecCCccHHHHHHHcC--CCChHHHHHHHHHHHHH-----------------------HHHHHhCCEeeCCCCHHHE
Confidence            999999 889999999944  67788888888888877                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .|.+                                                                            
T Consensus       152 lld~----------------------------------------------------------------------------  155 (370)
T KOG0583|consen  152 LLDG----------------------------------------------------------------------------  155 (370)
T ss_pred             EecC----------------------------------------------------------------------------
Confidence            9872                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCC-C-CCccceeeeeeeeEeec
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELG-W-AQPCDVWSIGCIIFELY  308 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~-~-~~~~DiwslG~~l~~l~  308 (351)
                                        ...++||+|||++...   .....+.+|||.|+|||++.+.+ | +.++|+||+|+++|.|+
T Consensus       156 ------------------~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml  217 (370)
T KOG0583|consen  156 ------------------NEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLL  217 (370)
T ss_pred             ------------------CCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHH
Confidence                              1168999999998765   34567899999999999999988 8 68899999999999999


Q ss_pred             cccccccccCCCceee
Q psy2006         309 LGITLMARKTKTKYFY  324 (351)
Q Consensus       309 tG~~pf~~~~~~~~~~  324 (351)
                      +|..||+..+....+.
T Consensus       218 ~G~~PF~d~~~~~l~~  233 (370)
T KOG0583|consen  218 CGRLPFDDSNVPNLYR  233 (370)
T ss_pred             hCCCCCCCccHHHHHH
Confidence            9999999977666664

>KOG0610|consensus

Probab=100.00  E-value=1e-38  Score=289.39  Aligned_cols=269  Identities=19%  Similarity=0.243  Sum_probs=190.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||+|.-|+||+|..+.++..+|+|++.+..    ....++..|..||+.+.|+.      +++||..|+.+..+|+|
T Consensus        82 lk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPF------lPTLYa~fet~~~~cl~  155 (459)
T KOG0610|consen   82 LKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPF------LPTLYASFETDKYSCLV  155 (459)
T ss_pred             HHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCc------cchhhheeeccceeEEE
Confidence            467999999999999999999999999998753    33457788999999999998      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC---
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD---  152 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n---  152 (351)
                      |||| ||+|+.+.+++....+++..||-++..++.|                       |+|||-.||+.||+||+|   
T Consensus       156 meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~A-----------------------LEYLHmlGivYRDLKPENILv  212 (459)
T KOG0610|consen  156 MEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLA-----------------------LEYLHMLGIVYRDLKPENILV  212 (459)
T ss_pred             EecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHH-----------------------HHHHHhhceeeccCCcceeEE
Confidence            9999 9999999999987777777777666666666                       999999999999999887   


Q ss_pred             -----eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCC-CCCc
Q psy2006         153 -----IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFD-KLPS  226 (351)
Q Consensus       153 -----i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~-~~~~  226 (351)
                           |+|+||.+|.......+- ..+   ..|+.-..                   +|..+.     .+..-|. ....
T Consensus       213 redGHIMLsDFDLS~~~~~~Pt~-~~s---~~~~~~~~-------------------~~~~~~-----~~~s~f~~r~~~  264 (459)
T KOG0610|consen  213 REDGHIMLSDFDLSLRCPVSPTL-VKS---SSPRSSGS-------------------QPSCRS-----RQPSCFSPRCLS  264 (459)
T ss_pred             ecCCcEEeeeccccccCCCCCee-ecc---CCCCCCCC-------------------Cccccc-----ccccccccchhc
Confidence                 499999999553211110 000   00000000                   000000     0000000 0000


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                      ....        ..+...        ... ....--.+...+....+++||-.|.|||++.|.+.+.++|+|+||+++||
T Consensus       265 ~~~~--------~~k~~~--------~~~-~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYE  327 (459)
T KOG0610|consen  265 SSKK--------RKKKDE--------SAS-RSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYE  327 (459)
T ss_pred             cccc--------cccccc--------ccc-ccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHH
Confidence            0000        000000        000 00000011123344578999999999999999999999999999999999


Q ss_pred             eccccccccccCCCceeee---cccCCcccccccccccccCccC
Q psy2006         307 LYLGITLMARKTKTKYFYH---GKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      |+.|..||.|.+..+++.+   ..+.|.+.+    .|+-+||||
T Consensus       328 mLyG~TPFKG~~~~~Tl~NIv~~~l~Fp~~~----~vs~~akDL  367 (459)
T KOG0610|consen  328 MLYGTTPFKGSNNKETLRNIVGQPLKFPEEP----EVSSAAKDL  367 (459)
T ss_pred             HHhCCCCcCCCCchhhHHHHhcCCCcCCCCC----cchhHHHHH
Confidence            9999999999999999864   677787776    467777776

>KOG0597|consensus

Probab=100.00  E-value=2.4e-39  Score=302.68  Aligned_cols=195  Identities=27%  Similarity=0.416  Sum_probs=175.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||+|.||+||+|+.+.+.+.||||.+.+.   +..-+.+.+|++|++.|+|+|      |+.++++|+...|+|+|.|
T Consensus         8 e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpn------iv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    8 EMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPN------IVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             HHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcc------hhhHHHhhcccceEEEEeh
Confidence            6799999999999999999999999999864   334467899999999999988      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      ||-|+|+.++...+  .+||++|+.++.++..|                       |.|||+.+|+|||+||.||.|.  
T Consensus        82 ~a~g~L~~il~~d~--~lpEe~v~~~a~~LVsa-----------------------L~yLhs~rilhrd~kPqniLl~--  134 (808)
T KOG0597|consen   82 YAVGDLFTILEQDG--KLPEEQVRAIAYDLVSA-----------------------LYYLHSNRILHRDMKPQNILLE--  134 (808)
T ss_pred             hhhhhHHHHHHhcc--CCCHHHHHHHHHHHHHH-----------------------HHHHHhcCcccccCCcceeeec--
Confidence            99669999998876  69999999999999998                       9999999999999999999887  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (808)
T KOG0597|consen  135 --------------------------------------------------------------------------------  134 (808)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcce---eccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   ..+.+|++|||+++.   .+...++..|||.|||||++.+.+|+..+|+||+||++||+.+|++||.
T Consensus       135 -------------~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlWslGcilYE~~~G~PPF~  201 (808)
T KOG0597|consen  135 -------------KGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLWSLGCILYELYVGQPPFY  201 (808)
T ss_pred             -------------CCCceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCccchhhHHHHHHHHHHHhcCCCCch
Confidence                         346799999999976   3345577899999999999999999999999999999999999999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      ...-...
T Consensus       202 a~si~~L  208 (808)
T KOG0597|consen  202 ARSITQL  208 (808)
T ss_pred             HHHHHHH
Confidence            7764443

>KOG0588|consensus

Probab=100.00  E-value=3e-39  Score=307.19  Aligned_cols=214  Identities=22%  Similarity=0.369  Sum_probs=184.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +-||.|+-|.|.+|++.+||+.+|||++.+.    ......+.+||-||+.+.|+|      |+++||+|+...++|+|.
T Consensus        18 kTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~Hpn------Vl~LydVwe~~~~lylvl   91 (786)
T KOG0588|consen   18 KTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPN------VLRLYDVWENKQHLYLVL   91 (786)
T ss_pred             ccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCC------eeeeeeeeccCceEEEEE
Confidence            3589999999999999999999999999764    233467889999999999888      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ ||.|++++.+.+  ++++..+..++.||+.|                       +.|||..+|+|||+|+.|+.|.
T Consensus        92 Eyv~gGELFdylv~kG--~l~e~eaa~ff~QIi~g-----------------------v~yCH~~~icHRDLKpENlLLd  146 (786)
T KOG0588|consen   92 EYVPGGELFDYLVRKG--PLPEREAAHFFRQILDG-----------------------VSYCHAFNICHRDLKPENLLLD  146 (786)
T ss_pred             EecCCchhHHHHHhhC--CCCCHHHHHHHHHHHHH-----------------------HHHHhhhcceeccCCchhhhhh
Confidence            999 999999999987  56777777766666666                       9999999999999999998876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (786)
T KOG0588|consen  147 --------------------------------------------------------------------------------  146 (786)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcce--eccccccccccceeeCceeeecCCC-CCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ...++||+||||+..  .+....+.||+|.|.|||++.|.+| +.++||||+|+++|.|+||..|
T Consensus       147 ---------------~~~nIKIADFGMAsLe~~gklLeTSCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LP  211 (786)
T KOG0588|consen  147 ---------------VKNNIKIADFGMASLEVPGKLLETSCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLP  211 (786)
T ss_pred             ---------------cccCEeeeccceeecccCCccccccCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCC
Confidence                           235599999999976  5667788999999999999999999 8999999999999999999999


Q ss_pred             ccccCCCceee---ecccCCcccccccccccccCccC
Q psy2006         314 MARKTKTKYFY---HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       314 f~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      |++++-..++.   .|.+.-+      .+|+.+|.+|
T Consensus       212 FdDdNir~LLlKV~~G~f~MP------s~Is~eaQdL  242 (786)
T KOG0588|consen  212 FDDDNIRVLLLKVQRGVFEMP------SNISSEAQDL  242 (786)
T ss_pred             CCCccHHHHHHHHHcCcccCC------CcCCHHHHHH
Confidence            99877777664   5777654      3566666554

>KOG0594|consensus

Probab=100.00  E-value=2.9e-38  Score=283.21  Aligned_cols=200  Identities=21%  Similarity=0.295  Sum_probs=174.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhh---hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK---YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~---~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------   71 (351)
                      +++||+|+||+||+|+++.+|+.||+|.+.....   ....+.+|+.+|+.|+|+|+     |+.|+|++....      
T Consensus        16 ~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~-----iv~L~dv~~~~~~~~~~~   90 (323)
T KOG0594|consen   16 VEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANH-----IVRLHDVIHTSNNHRGIG   90 (323)
T ss_pred             HHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcc-----eEEEEeeeeecccccccc
Confidence            4689999999999999999999999999986533   34567899999999998774     999999999887      


Q ss_pred             eEEEEEeccCCCHHHHHHhcCC--CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccC
Q psy2006          72 HMCIAFEILGLSVFDFLKENNY--LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR  149 (351)
Q Consensus        72 ~~~lV~E~~g~sL~~~l~~~~~--~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k  149 (351)
                      .+++||||+..+|.++|.....  ..++...++.+++||+.|                       |+|||+++|+|||+|
T Consensus        91 ~l~lvfe~~d~DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~g-----------------------l~~~H~~~IlHRDLK  147 (323)
T KOG0594|consen   91 KLYLVFEFLDRDLKKYMDSLPKKPQGLPPRLIKSFMRQLLRG-----------------------LAFLHSHGILHRDLK  147 (323)
T ss_pred             eEEEEEEeecccHHHHHHhccccccCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecccCC
Confidence            8999999999999999998763  356777888888888888                       999999999999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      |.|+.+.                                                                         
T Consensus       148 PQNlLi~-------------------------------------------------------------------------  154 (323)
T KOG0594|consen  148 PQNLLIS-------------------------------------------------------------------------  154 (323)
T ss_pred             cceEEEC-------------------------------------------------------------------------
Confidence            9999987                                                                         


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecC-CCCCccceeeeeeeeE
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIF  305 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~  305 (351)
                                            ..+.+||+|||+++...   ...+.-++|.+|+|||++.+. .|+...||||+||+++
T Consensus       155 ----------------------~~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaPEvLlGs~~Ys~~vDiWs~GcIfa  212 (323)
T KOG0594|consen  155 ----------------------SSGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAPEVLLGSTSYSTSVDIWSLGCIFA  212 (323)
T ss_pred             ----------------------CCCcEeeeccchHHHhcCCcccccccEEEeeccCHHHhcCCCcCCCCcchHhHHHHHH
Confidence                                  24679999999987533   334556789999999999986 6899999999999999


Q ss_pred             eeccccccccccCCCcee
Q psy2006         306 ELYLGITLMARKTKTKYF  323 (351)
Q Consensus       306 ~l~tG~~pf~~~~~~~~~  323 (351)
                      ||++++++|.+.++.+..
T Consensus       213 Em~~~~~LFpG~se~~ql  230 (323)
T KOG0594|consen  213 EMFTRRPLFPGDSEIDQL  230 (323)
T ss_pred             HHHhCCCCCCCCcHHHHH
Confidence            999999999999887665

>KOG0592|consensus

Probab=100.00  E-value=2.2e-38  Score=295.53  Aligned_cols=197  Identities=20%  Similarity=0.310  Sum_probs=167.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+|++|++|+++.+++.|||||+.+..    ...+-+.+|-.+|.+| .|+.      |++|+-.|.+...+|+|
T Consensus        79 ~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPg------ivkLy~TFQD~~sLYFv  152 (604)
T KOG0592|consen   79 KILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPG------IVKLYFTFQDEESLYFV  152 (604)
T ss_pred             heeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCC------eEEEEEEeecccceEEE
Confidence            57999999999999999999999999998643    3345578899999999 5555      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      +||+ +|+|.++|++.+  .|++..+|-++.||+.|                       |+|||+.||+|||+||+||.|
T Consensus       153 Le~A~nGdll~~i~K~G--sfde~caR~YAAeIldA-----------------------leylH~~GIIHRDlKPENILL  207 (604)
T KOG0592|consen  153 LEYAPNGDLLDLIKKYG--SFDETCARFYAAEILDA-----------------------LEYLHSNGIIHRDLKPENILL  207 (604)
T ss_pred             EEecCCCcHHHHHHHhC--cchHHHHHHHHHHHHHH-----------------------HHHHHhcCceeccCChhheeE
Confidence            9999 999999999986  57777777777777776                       999999999999999999876


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       208 d-------------------------------------------------------------------------------  208 (604)
T KOG0592|consen  208 D-------------------------------------------------------------------------------  208 (604)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            5                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceec----------------cccccccccceeeCceeeecCCCCCccceee
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD----------------EHHSTIVSTRHYRAPEVILELGWAQPCDVWS  299 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~----------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Diws  299 (351)
                                      ....++|+|||.+...+                ....+++||..|.+||++.....++.+|+|+
T Consensus       209 ----------------~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWA  272 (604)
T KOG0592|consen  209 ----------------KDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWA  272 (604)
T ss_pred             ----------------CCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHH
Confidence                            24567777777765411                1124589999999999999999999999999


Q ss_pred             eeeeeEeeccccccccccCCCceee
Q psy2006         300 IGCIIFELYLGITLMARKTKTKYFY  324 (351)
Q Consensus       300 lG~~l~~l~tG~~pf~~~~~~~~~~  324 (351)
                      |||++|+|+.|.+||.+.+.--+|.
T Consensus       273 lGCilyQmlaG~PPFra~NeyliFq  297 (604)
T KOG0592|consen  273 LGCILYQMLAGQPPFRAANEYLIFQ  297 (604)
T ss_pred             HHHHHHHHhcCCCCCccccHHHHHH
Confidence            9999999999999999888766664

>KOG0611|consensus

Probab=100.00  E-value=2.2e-38  Score=286.16  Aligned_cols=193  Identities=21%  Similarity=0.358  Sum_probs=172.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||.|.||.|-+|.+...|+.||||.++++.    .+--++.+||.||+.|+|+|      |++++++|+..+.++|||
T Consensus        59 etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPh------II~IyEVFENkdKIvivM  132 (668)
T KOG0611|consen   59 ETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPH------IIQIYEVFENKDKIVIVM  132 (668)
T ss_pred             HHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCc------eeehhhhhcCCceEEEEE
Confidence            57999999999999999999999999998754    23346789999999999999      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||. +|.|+|++.+++  .+++..++.+++||..|                       +.|||..+++|||+|..||.|.
T Consensus       133 EYaS~GeLYDYiSer~--~LsErEaRhfFRQIvSA-----------------------VhYCHknrVvHRDLKLENILLD  187 (668)
T KOG0611|consen  133 EYASGGELYDYISERG--SLSEREARHFFRQIVSA-----------------------VHYCHKNRVVHRDLKLENILLD  187 (668)
T ss_pred             EecCCccHHHHHHHhc--cccHHHHHHHHHHHHHH-----------------------HHHHhhccceecccchhheeec
Confidence            999 999999999986  57777777777777777                       9999999999999999999887


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       188 --------------------------------------------------------------------------------  187 (668)
T KOG0611|consen  188 --------------------------------------------------------------------------------  187 (668)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecCCC-CCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ..+++||+|||++...  ..-..++||+|.|.+||++.+.+| ++.+|.||||+++|.|+.|..|
T Consensus       188 ---------------~N~NiKIADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~PY~GPEVDsWsLGvLLYtLVyGtMP  252 (668)
T KOG0611|consen  188 ---------------QNNNIKIADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTPYKGPEVDSWSLGVLLYTLVYGTMP  252 (668)
T ss_pred             ---------------CCCCeeeeccchhhhhccccHHHHhcCCcccCCccccCCCCCCCCccchhhHHHHHHHHhhcccc
Confidence                           3678999999998663  344578999999999999999999 8899999999999999999999


Q ss_pred             ccccCCC
Q psy2006         314 MARKTKT  320 (351)
Q Consensus       314 f~~~~~~  320 (351)
                      |+|.+-.
T Consensus       253 FDG~Dhk  259 (668)
T KOG0611|consen  253 FDGRDHK  259 (668)
T ss_pred             cCCchHH
Confidence            9998743

>KOG0660|consensus

Probab=100.00  E-value=8e-38  Score=279.85  Aligned_cols=197  Identities=24%  Similarity=0.448  Sum_probs=172.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecc---hhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC-----Ce
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKN---VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH-----GH   72 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~---~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~-----~~   72 (351)
                      ++.||.|+||.|+.|.++.+|+.||||.+..   .....++..+|+++|++++|+|      |+.++|.+..+     ..
T Consensus        27 ~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeN------Ii~l~di~~p~~~~~f~D  100 (359)
T KOG0660|consen   27 IEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHEN------IIGLLDIFRPPSRDKFND  100 (359)
T ss_pred             cccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCC------cceEEeecccccccccce
Confidence            4679999999999999999999999999974   2455678899999999999888      99999999872     28


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +|+|+|+|+.+|.+.++...                         .++.+.++++++|+++||.|+|+.+|+|||+||+|
T Consensus       101 vYiV~elMetDL~~iik~~~-------------------------~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsN  155 (359)
T KOG0660|consen  101 VYLVFELMETDLHQIIKSQQ-------------------------DLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSN  155 (359)
T ss_pred             eEEehhHHhhHHHHHHHcCc-------------------------cccHHHHHHHHHHHHHhcchhhcccccccccchhh
Confidence            99999999999999999875                         36777888888888888999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       156 ll~n----------------------------------------------------------------------------  159 (359)
T KOG0660|consen  156 LLLN----------------------------------------------------------------------------  159 (359)
T ss_pred             eeec----------------------------------------------------------------------------
Confidence            9876                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCccee-----ccccccccccceeeCceeeec-CCCCCccceeeeeeeeEe
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD-----DEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-----~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~  306 (351)
                                         ..+.+||+|||+++..     ....+..+.|.+|+|||++.. ..|+.+.||||+||++.|
T Consensus       160 -------------------~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AE  220 (359)
T KOG0660|consen  160 -------------------ADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAE  220 (359)
T ss_pred             -------------------cCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHH
Confidence                               4678999999999875     334467888999999998864 678999999999999999


Q ss_pred             eccccccccccCCCcee
Q psy2006         307 LYLGITLMARKTKTKYF  323 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~~  323 (351)
                      |++|+++|.|.+.-+.+
T Consensus       221 mL~gkplFpG~d~v~Ql  237 (359)
T KOG0660|consen  221 MLTGKPLFPGKDYVHQL  237 (359)
T ss_pred             HHcCCCCCCCCchHHHH
Confidence            99999999998866554

>KOG0663|consensus

Probab=100.00  E-value=8.6e-38  Score=276.37  Aligned_cols=210  Identities=21%  Similarity=0.302  Sum_probs=178.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhh---hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC--eEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK---YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--HMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~---~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~--~~~l   75 (351)
                      +..|++|+||.||+|+|+.+++.||+|.++.+..   ..=...+||.+|.+.+|+|      ||.+.++.....  .+||
T Consensus        81 lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~N------IV~vkEVVvG~~~d~iy~  154 (419)
T KOG0663|consen   81 LNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPN------IVEVKEVVVGSNMDKIYI  154 (419)
T ss_pred             HhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCC------eeeeEEEEeccccceeee
Confidence            4579999999999999999999999999986432   1224689999999999888      999999998765  8999


Q ss_pred             EEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          76 AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||||..||..+|..-+ .++....+|-++.|++.|                       +.|||...|+|||+|++|+.+
T Consensus       155 VMe~~EhDLksl~d~m~-q~F~~~evK~L~~QlL~g-----------------------lk~lH~~wilHRDLK~SNLLm  210 (419)
T KOG0663|consen  155 VMEYVEHDLKSLMETMK-QPFLPGEVKTLMLQLLRG-----------------------LKHLHDNWILHRDLKTSNLLL  210 (419)
T ss_pred             eHHHHHhhHHHHHHhcc-CCCchHHHHHHHHHHHHH-----------------------HHHHhhceeEecccchhheee
Confidence            99999999999998876 467777777777777777                       999999999999999999998


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       211 ~~------------------------------------------------------------------------------  212 (419)
T KOG0663|consen  211 SH------------------------------------------------------------------------------  212 (419)
T ss_pred             cc------------------------------------------------------------------------------
Confidence            83                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                       .+.+||+|||+++....+   .+..+-|.+|+|||++++. .|+.+.|+||+||++.|++++.
T Consensus       213 -----------------~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~k  275 (419)
T KOG0663|consen  213 -----------------KGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQK  275 (419)
T ss_pred             -----------------CCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcC
Confidence                             467999999999876554   5667779999999999986 4799999999999999999999


Q ss_pred             ccccccCCCceee--------ecccCCccccc
Q psy2006         312 TLMARKTKTKYFY--------HGKLDWDEKGT  335 (351)
Q Consensus       312 ~pf~~~~~~~~~~--------~~~~~~~~~~~  335 (351)
                      ++|.|.+..+.+.        ..+-.|++.+.
T Consensus       276 Plf~G~sE~dQl~~If~llGtPte~iwpg~~~  307 (419)
T KOG0663|consen  276 PLFPGKSEIDQLDKIFKLLGTPSEAIWPGYSE  307 (419)
T ss_pred             CCCCCCchHHHHHHHHHHhCCCccccCCCccc
Confidence            9999999877653        12335666655

>KOG0694|consensus

Probab=100.00  E-value=3.3e-38  Score=301.86  Aligned_cols=197  Identities=17%  Similarity=0.314  Sum_probs=170.2

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++.||+|+||+|++|..+.+++.||||++++.    .+..+....|.+|+.... |+.      +++|+..|.+..|+|+
T Consensus       373 l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPF------L~~L~~~fQT~~~l~f  446 (694)
T KOG0694|consen  373 LAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPF------LVNLFSCFQTKEHLFF  446 (694)
T ss_pred             EEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCe------EeecccccccCCeEEE
Confidence            35799999999999999999999999999875    356678889999999886 444      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||+ ||++...++..   .+++..++-++..++.|                       |+|||++||++||+|-+||.
T Consensus       447 vmey~~Ggdm~~~~~~~---~F~e~rarfyaAev~l~-----------------------L~fLH~~~IIYRDlKLdNiL  500 (694)
T KOG0694|consen  447 VMEYVAGGDLMHHIHTD---VFSEPRARFYAAEVVLG-----------------------LQFLHENGIIYRDLKLDNLL  500 (694)
T ss_pred             EEEecCCCcEEEEEecc---cccHHHHHHHHHHHHHH-----------------------HHHHHhcCceeeecchhheE
Confidence            99999 89965554433   35555555555555555                       99999999999999999999


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      |.                                                                              
T Consensus       501 LD------------------------------------------------------------------------------  502 (694)
T KOG0694|consen  501 LD------------------------------------------------------------------------------  502 (694)
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            87                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcce---eccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                       ..+.+||+|||+|+-   .....++.+|||.|+|||++.+..|+.++|+|+|||++|+|++|+
T Consensus       503 -----------------~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq  565 (694)
T KOG0694|consen  503 -----------------TEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGE  565 (694)
T ss_pred             -----------------ccCcEEecccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCC
Confidence                             468899999999975   345667899999999999999999999999999999999999999


Q ss_pred             ccccccCCCceee
Q psy2006         312 TLMARKTKTKYFY  324 (351)
Q Consensus       312 ~pf~~~~~~~~~~  324 (351)
                      +||.+++.+++|.
T Consensus       566 ~PF~gddEee~Fd  578 (694)
T KOG0694|consen  566 SPFPGDDEEEVFD  578 (694)
T ss_pred             CCCCCCCHHHHHH
Confidence            9999999999885

>KOG0032|consensus

Probab=100.00  E-value=2.7e-37  Score=290.86  Aligned_cols=221  Identities=27%  Similarity=0.353  Sum_probs=191.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||.|+||.||+|+.+.+|+.+|+|++.+..    ...+.+.+|+++|+++. |+|      ||++++.|+....+++|
T Consensus        41 ~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpn------iv~l~~~~e~~~~~~lv  114 (382)
T KOG0032|consen   41 RELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPN------IVQLKDAFEDPDSVYLV  114 (382)
T ss_pred             hhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCC------EEEEEEEEEcCCeEEEE
Confidence            57999999999999999999999999997643    23468899999999998 666      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||+| ||.|++.+...   .+++..+..++.|++.+                       +.|||+.|++|||+||+|+.+
T Consensus       115 mEL~~GGeLfd~i~~~---~~sE~da~~~~~~il~a-----------------------v~~lH~~gvvHrDlKpEN~L~  168 (382)
T KOG0032|consen  115 MELCEGGELFDRIVKK---HYSERDAAGIIRQILEA-----------------------VKYLHSLGVVHRDLKPENLLL  168 (382)
T ss_pred             EEecCCchHHHHHHHc---cCCHHHHHHHHHHHHHH-----------------------HHHHHhCCceeccCCHHHeee
Confidence            9999 99999999887   27888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+..                                                                            
T Consensus       169 ~~~~----------------------------------------------------------------------------  172 (382)
T KOG0032|consen  169 ASKD----------------------------------------------------------------------------  172 (382)
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            7311                                                                            


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     .....+|++|||++.....  .....+|||.|+|||++.+.+++..+|+||+|+++|.|++|.+|
T Consensus       173 ---------------~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~P  237 (382)
T KOG0032|consen  173 ---------------EGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPP  237 (382)
T ss_pred             ---------------CCCCcEEEeeCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCC
Confidence                           0124799999999987554  56779999999999999999999999999999999999999999


Q ss_pred             ccccCCCceee---ecccCCcccccccccccccCccC
Q psy2006         314 MARKTKTKYFY---HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       314 f~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      |.+.+..+.+.   .+++.++...|.  .+++.||++
T Consensus       238 F~~~~~~~~~~~i~~~~~~f~~~~w~--~is~~akd~  272 (382)
T KOG0032|consen  238 FWGETEFEIFLAILRGDFDFTSEPWD--DISESAKDF  272 (382)
T ss_pred             CcCCChhHHHHHHHcCCCCCCCCCcc--ccCHHHHHH
Confidence            99999888875   466666666665  888888876

>KOG0198|consensus

Probab=100.00  E-value=1.7e-36  Score=275.54  Aligned_cols=192  Identities=22%  Similarity=0.262  Sum_probs=164.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhh-hHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC--eEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKY-REAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--HMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~-~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~--~~~lV~E   78 (351)
                      +.||+|+||+||++.+..+|+.+|+|.+...... .+...+|+++|++|+|++      ||++++......  .++|.||
T Consensus        23 ~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~------IV~~~G~~~~~~~~~~~i~mE   96 (313)
T KOG0198|consen   23 KLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPN------IVQYYGSSSSRENDEYNIFME   96 (313)
T ss_pred             ccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCC------EEeeCCccccccCeeeEeeee
Confidence            5699999999999999989999999999764211 356789999999999766      999999855555  6999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +|||.+++.+.+. .+|+..++.+.+|+++|                       |.|||++|++|+|+|+.|+.+..
T Consensus        97 y~~~GsL~~~~~~~g~-~l~E~~v~~ytr~iL~G-----------------------L~ylHs~g~vH~DiK~~NiLl~~  152 (313)
T KOG0198|consen   97 YAPGGSLSDLIKRYGG-KLPEPLVRRYTRQILEG-----------------------LAYLHSKGIVHCDIKPANILLDP  152 (313)
T ss_pred             ccCCCcHHHHHHHcCC-CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEeccCcccceEEEeC
Confidence            99 9999999999876 79999999999999998                       99999999999999999998870


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (313)
T KOG0198|consen  153 --------------------------------------------------------------------------------  152 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec------cccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD------EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG  310 (351)
                                    ....+||+|||++....      .......||+.|||||++... ....++||||+||++.||+||
T Consensus       153 --------------~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg  218 (313)
T KOG0198|consen  153 --------------SNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTG  218 (313)
T ss_pred             --------------CCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCcCCccchhhhcCCEEEeccCC
Confidence                          13579999999887533      223468899999999999853 334699999999999999999


Q ss_pred             ccccccc
Q psy2006         311 ITLMARK  317 (351)
Q Consensus       311 ~~pf~~~  317 (351)
                      .+||...
T Consensus       219 ~~PW~~~  225 (313)
T KOG0198|consen  219 KPPWSEF  225 (313)
T ss_pred             CCcchhh
Confidence            9999873

>KOG0658|consensus

Probab=100.00  E-value=4.4e-37  Score=275.56  Aligned_cols=196  Identities=20%  Similarity=0.367  Sum_probs=164.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-----eEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-----HMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-----~~~lV   76 (351)
                      +.+|+|+||.||+|+..++++.||||.+-.+..   -..+|+++|+.+.|+|      ||+|.-+|....     ++.+|
T Consensus        30 ~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r---~knrEl~im~~l~HpN------IV~L~~~f~~~~~~d~~~lnlV  100 (364)
T KOG0658|consen   30 RLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR---YKNRELQIMRKLDHPN------IVRLLYFFSSSTESDEVYLNLV  100 (364)
T ss_pred             EEEeecccceEEEEEEcCCCceeEEEEecCCCC---cCcHHHHHHHhcCCcC------eeeEEEEEEecCCCchhHHHHH
Confidence            579999999999999999999999999976433   3346999999999888      999999997543     78899


Q ss_pred             EeccCCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          77 FEILGLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        77 ~E~~g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |||++.+|.+.++..  ....+|.-.+|-++.||                       ++||.|||+.||+|||+||.|+.
T Consensus       101 leymP~tL~~~~r~~~~~~~~mp~~~iKLYt~Ql-----------------------frgl~yLh~~~IcHRDIKPqNlL  157 (364)
T KOG0658|consen  101 LEYMPETLYRVIRHYTRANQRMPLLEIKLYTYQL-----------------------FRGLAYLHSHGICHRDIKPQNLL  157 (364)
T ss_pred             HHhchHHHHHHHHHHhhcCCCCceeeeHHHHHHH-----------------------HHHHHHHHhcCcccCCCChheEE
Confidence            999999999999864  12345554455555555                       55599999999999999999987


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       158 vD------------------------------------------------------------------------------  159 (364)
T KOG0658|consen  158 VD------------------------------------------------------------------------------  159 (364)
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            76                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcce--eccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~--~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                      +..+.+||+|||.++.  .+.+..+..+|..|+|||++++ ..|+.+.|+||.||++.||+-|+
T Consensus       160 ----------------~~tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~  223 (364)
T KOG0658|consen  160 ----------------PDTGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQ  223 (364)
T ss_pred             ----------------CCCCeEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCC
Confidence                            1357899999999987  4555667888999999999998 47899999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      +.|.|++..+.+
T Consensus       224 plFpG~s~~dQL  235 (364)
T KOG0658|consen  224 PLFPGDSSVDQL  235 (364)
T ss_pred             cccCCCCHHHHH
Confidence            999999877765

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=2.7e-36  Score=285.84  Aligned_cols=227  Identities=22%  Similarity=0.324  Sum_probs=163.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||+|+||+||+|.+..+++.||+|++.+..    .....+..|+.+++.+.|++      |+++++.|....++|||
T Consensus         6 ~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~------iv~~~~~~~~~~~~~lv   79 (363)
T cd05628           6 LKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLW------VVKMFYSFQDKLNLYLI   79 (363)
T ss_pred             eEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCC------cceEEEEEecCCeEEEE
Confidence            468999999999999999999999999997532    22346778999999998877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe--
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI--  153 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni--  153 (351)
                      |||+ |++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.|+  
T Consensus        80 ~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~a-----------------------L~~lH~~givHrDlKp~NILi  134 (363)
T cd05628          80 MEFLPGGDMMTLLMKKD--TLTEEETQFYIAETVLA-----------------------IDSIHQLGFIHRDIKPDNLLL  134 (363)
T ss_pred             EcCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEecCCCHHHeEE
Confidence            9999 899999998764  57888888888888888                       9999999999999998775  


Q ss_pred             ------EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         154 ------RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       154 ------~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                            +|+|||+|+.........    .+..   .                                 .+.    .+..
T Consensus       135 ~~~~~vkL~DFGla~~~~~~~~~~----~~~~---~---------------------------------~~~----~~~~  170 (363)
T cd05628         135 DSKGHVKLSDFGLCTGLKKAHRTE----FYRN---L---------------------------------NHS----LPSD  170 (363)
T ss_pred             CCCCCEEEeeccCccccccccccc----cccc---c---------------------------------ccc----cccc
Confidence                  677787775432211100    0000   0                                 000    0000


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                  ....+        ...-...+... ..........+||+.|+|||++.+..++.++|+|||||++|+|
T Consensus       171 ------------~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~el  229 (363)
T cd05628         171 ------------FTFQN--------MNSKRKAETWK-RNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEM  229 (363)
T ss_pred             ------------ccccc--------cccccccchhh-hccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHH
Confidence                        00000        00000000000 0001112346799999999999999999999999999999999


Q ss_pred             ccccccccccCCCcee
Q psy2006         308 YLGITLMARKTKTKYF  323 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~~  323 (351)
                      ++|..||.+.+..+.+
T Consensus       230 l~G~~Pf~~~~~~~~~  245 (363)
T cd05628         230 LIGYPPFCSETPQETY  245 (363)
T ss_pred             HhCCCCCCCCCHHHHH
Confidence            9999999988766654

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0033|consensus

Probab=100.00  E-value=3e-38  Score=268.65  Aligned_cols=221  Identities=20%  Similarity=0.296  Sum_probs=185.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||.|+|+.|+++.++.+|+.||+|+++..   ....+...+|++|-+.|+|+|      |++|.+.+...+..+||+|
T Consensus        17 e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~------IvrL~~ti~~~~~~ylvFe   90 (355)
T KOG0033|consen   17 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPN------IVRLHDSIQEESFHYLVFD   90 (355)
T ss_pred             HHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCc------EeehhhhhcccceeEEEEe
Confidence            4699999999999999999999999999643   345678899999999999988      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ++ |++|..-+-...  -                       +++..+..+++|++.+|+|||.++|+|||+||.|+.|..
T Consensus        91 ~m~G~dl~~eIV~R~--~-----------------------ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLAS  145 (355)
T KOG0033|consen   91 LVTGGELFEDIVARE--F-----------------------YSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLAS  145 (355)
T ss_pred             cccchHHHHHHHHHH--H-----------------------HHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeee
Confidence            99 888876554432  2                       445555555666666699999999999999999998871


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                 .                                                                    
T Consensus       146 -----------K--------------------------------------------------------------------  146 (355)
T KOG0033|consen  146 -----------K--------------------------------------------------------------------  146 (355)
T ss_pred             -----------c--------------------------------------------------------------------
Confidence                       0                                                                    


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   .....+||+|||++...+.  .....+|||.|||||++...+++.++|||++|+++|-++.|.+||.
T Consensus       147 -------------~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~  213 (355)
T KOG0033|consen  147 -------------AKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFW  213 (355)
T ss_pred             -------------cCCCceeecccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCC
Confidence                         0234699999999976442  2234789999999999999999999999999999999999999999


Q ss_pred             ccCCCceee---ecccCCcccccccccccccCccC
Q psy2006         316 RKTKTKYFY---HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       316 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      +.+...+|.   .|+.+.+...|.  -|+++||+|
T Consensus       214 ~~~~~rlye~I~~g~yd~~~~~w~--~is~~Ak~L  246 (355)
T KOG0033|consen  214 DEDQHRLYEQIKAGAYDYPSPEWD--TVTPEAKSL  246 (355)
T ss_pred             CccHHHHHHHHhccccCCCCcccC--cCCHHHHHH
Confidence            999998886   588888876665  889999886

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=5.3e-36  Score=285.79  Aligned_cols=231  Identities=21%  Similarity=0.303  Sum_probs=164.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||+|+||+||+|++..+++.||+|++.+..    .....+.+|+.+++.+.|++      |+++++.|...+++|+|
T Consensus         6 ~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~------iv~~~~~~~~~~~~~lv   79 (382)
T cd05625           6 IKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEW------VVRLYYSFQDKDNLYFV   79 (382)
T ss_pred             EEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCc------CCeEEEEEEeCCEEEEE
Confidence            468999999999999999999999999997532    23456788999999998877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe--
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI--  153 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni--  153 (351)
                      |||| +++|.+++.+.+  .+++..++.++.|++.|                       |+|||+++++|||+|++||  
T Consensus        80 ~E~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~a-----------------------l~~lH~~~ivHrDlKp~NILl  134 (382)
T cd05625          80 MDYIPGGDMMSLLIRMG--IFPEDLARFYIAELTCA-----------------------VESVHKMGFIHRDIKPDNILI  134 (382)
T ss_pred             EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHEEE
Confidence            9999 899999998764  57888888888888888                       9999999999999998775  


Q ss_pred             ------EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         154 ------RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       154 ------~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                            +|+|||+|...........    +. +......                                         
T Consensus       135 ~~~g~~kL~DFGla~~~~~~~~~~~----~~-~~~~~~~-----------------------------------------  168 (382)
T cd05625         135 DRDGHIKLTDFGLCTGFRWTHDSKY----YQ-SGDHVRQ-----------------------------------------  168 (382)
T ss_pred             CCCCCEEEeECCCCccccccccccc----cc-ccccccc-----------------------------------------
Confidence                  7789998754221111000    00 0000000                                         


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeecc------CCcc-eeccccccccccceeeCceeeecCCCCCccceeee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDF------GSAT-FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSI  300 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~df------g~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  300 (351)
                         ...       ...+...    ....+...+.      .... .........+||+.|+|||++.+.+++.++|+||+
T Consensus       169 ---~~~-------~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSl  234 (382)
T cd05625         169 ---DSM-------DFSNEWG----DPANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSV  234 (382)
T ss_pred             ---ccc-------ccccccc----ccccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEec
Confidence               000       0000000    0000000000      0000 01112234679999999999999999999999999


Q ss_pred             eeeeEeeccccccccccCCCce
Q psy2006         301 GCIIFELYLGITLMARKTKTKY  322 (351)
Q Consensus       301 G~~l~~l~tG~~pf~~~~~~~~  322 (351)
                      ||++|+|++|.+||.+.+..+.
T Consensus       235 Gvil~elltG~~Pf~~~~~~~~  256 (382)
T cd05625         235 GVILYEMLVGQPPFLAQTPLET  256 (382)
T ss_pred             hHHHHHHHhCCCCCCCCCHHHH
Confidence            9999999999999988765543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0585|consensus

Probab=100.00  E-value=1.7e-36  Score=278.75  Aligned_cols=216  Identities=20%  Similarity=0.260  Sum_probs=170.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---------------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeee
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---------------KYREAARLEINALQKIGEKDPNGRHLCVKMLD   65 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---------------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~   65 (351)
                      ++.||.|+||.|-+|++..+++.||||++.+.+               ...+.+.+||.||+++.|+|      ||+|++
T Consensus       102 ~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~n------VV~LiE  175 (576)
T KOG0585|consen  102 IKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPN------VVKLIE  175 (576)
T ss_pred             hhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcC------eeEEEE
Confidence            367999999999999999999999999997542               12257889999999999888      999999


Q ss_pred             eEeeCC--eEEEEEecc-CCCHHHHHHhcCCCC-CchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc
Q psy2006          66 WFDYHG--HMCIAFEIL-GLSVFDFLKENNYLP-YSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK  141 (351)
Q Consensus        66 ~f~~~~--~~~lV~E~~-g~sL~~~l~~~~~~~-~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  141 (351)
                      +..+..  ++|||+||| .|.+...   ....+ +.+.+++.+++.+..|                       |+|||.+
T Consensus       176 vLDDP~s~~~YlVley~s~G~v~w~---p~d~~els~~~Ar~ylrDvv~G-----------------------LEYLH~Q  229 (576)
T KOG0585|consen  176 VLDDPESDKLYLVLEYCSKGEVKWC---PPDKPELSEQQARKYLRDVVLG-----------------------LEYLHYQ  229 (576)
T ss_pred             eecCcccCceEEEEEeccCCccccC---CCCcccccHHHHHHHHHHHHHH-----------------------HHHHHhc
Confidence            998775  999999999 7765532   11112 4555555555555555                       9999999


Q ss_pred             cccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         142 KREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       142 ~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                      ||+||||||.|+.|.+                                                                
T Consensus       230 giiHRDIKPsNLLl~~----------------------------------------------------------------  245 (576)
T KOG0585|consen  230 GIIHRDIKPSNLLLSS----------------------------------------------------------------  245 (576)
T ss_pred             CeeccccchhheEEcC----------------------------------------------------------------
Confidence            9999999999999882                                                                


Q ss_pred             CCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceec--------cccccccccceeeCceeeecC---C
Q psy2006         222 DKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--------EHHSTIVSTRHYRAPEVILEL---G  290 (351)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--------~~~~~~~gt~~y~aPE~~~~~---~  290 (351)
                                                     .+.|||+|||.+....        ......+|||.|+|||++.+.   .
T Consensus       246 -------------------------------~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tvGTPAF~APE~c~~~~~~~  294 (576)
T KOG0585|consen  246 -------------------------------DGTVKISDFGVSNEFPQGSDEGSDDQLSRTVGTPAFFAPELCSGGNSFS  294 (576)
T ss_pred             -------------------------------CCcEEeeccceeeecccCCccccHHHHhhcCCCccccchHhhcCCCCcc
Confidence                                           4679999999886431        122447899999999999873   2


Q ss_pred             C-CCccceeeeeeeeEeeccccccccccCCCceee---ecccCCcccccccccccccCccC
Q psy2006         291 W-AQPCDVWSIGCIIFELYLGITLMARKTKTKYFY---HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       291 ~-~~~~DiwslG~~l~~l~tG~~pf~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      + +.+.||||+|++||.++.|+.||.+....++|.   +..+.|+..++    +++++|||
T Consensus       295 ~~g~a~DiWalGVTLYCllfG~~PF~~~~~~~l~~KIvn~pL~fP~~pe----~~e~~kDl  351 (576)
T KOG0585|consen  295 YSGFALDIWALGVTLYCLLFGQLPFFDDFELELFDKIVNDPLEFPENPE----INEDLKDL  351 (576)
T ss_pred             ccchhhhhhhhhhhHHHhhhccCCcccchHHHHHHHHhcCcccCCCccc----ccHHHHHH
Confidence            3 778899999999999999999999999888875   56667776653    34454443

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=1.1e-35  Score=283.50  Aligned_cols=235  Identities=22%  Similarity=0.325  Sum_probs=164.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||+|+||+||+|++..+++.||+|++.+..    ...+.+.+|+.+++.++|++      |++++++|...+++|+|
T Consensus         6 ~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~------iv~l~~~~~~~~~~~lv   79 (381)
T cd05626           6 IKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEW------VVKLYYSFQDKDNLYFV   79 (381)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCC------eeeeEEEEecCCEEEEE
Confidence            468999999999999999999999999997532    23356788999999999887      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe--
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI--  153 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni--  153 (351)
                      |||+ +++|.+++.+..  .+++..++.++.|++.|                       |+|||+.|++|||+|+.|+  
T Consensus        80 ~E~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~a-----------------------L~~LH~~givHrDlKp~Nili  134 (381)
T cd05626          80 MDYIPGGDMMSLLIRME--VFPEVLARFYIAELTLA-----------------------IESVHKMGFIHRDIKPDNILI  134 (381)
T ss_pred             EecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeecCCcHHHEEE
Confidence            9999 899999998764  57888888888888888                       9999999999999998875  


Q ss_pred             ------EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         154 ------RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       154 ------~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                            +|+|||+++.........    .+.....+. ..                                     .  
T Consensus       135 ~~~~~~kL~DFGl~~~~~~~~~~~----~~~~~~~~~-~~-------------------------------------~--  170 (381)
T cd05626         135 DLDGHIKLTDFGLCTGFRWTHNSK----YYQKGSHIR-QD-------------------------------------S--  170 (381)
T ss_pred             CCCCCEEEeeCcCCcccccccccc----ccccccccc-cc-------------------------------------c--
Confidence                  678888875432211100    000000000 00                                     0  


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcce---eccccccccccceeeCceeeecCCCCCccceeeeeeee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCII  304 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l  304 (351)
                        . .....   ++.      ...+.......+......   ......+.+||+.|+|||++.+..++.++|+||+||++
T Consensus       171 --~-~~~~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il  238 (381)
T cd05626         171 --M-EPSDL---WDD------VSNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVIL  238 (381)
T ss_pred             --c-Ccccc---ccc------ccccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHH
Confidence              0 00000   000      000000000000000000   11112356899999999999988999999999999999


Q ss_pred             EeeccccccccccCCCce
Q psy2006         305 FELYLGITLMARKTKTKY  322 (351)
Q Consensus       305 ~~l~tG~~pf~~~~~~~~  322 (351)
                      |+|++|..||...+..+.
T Consensus       239 ~elltG~~Pf~~~~~~~~  256 (381)
T cd05626         239 FEMLVGQPPFLAPTPTET  256 (381)
T ss_pred             HHHHhCCCCCcCCCHHHH
Confidence            999999999988765543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG4236|consensus

Probab=100.00  E-value=1.8e-35  Score=274.77  Aligned_cols=223  Identities=19%  Similarity=0.237  Sum_probs=190.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||.|.||+||-|+++.+|+.||||++++.   .........|++||+.+.|+.      ||.+.-.|+..+.++.|||
T Consensus       570 evLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPG------iV~le~M~ET~ervFVVME  643 (888)
T KOG4236|consen  570 EVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPG------IVNLECMFETPERVFVVME  643 (888)
T ss_pred             hhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCC------eeEEEEeecCCceEEEEeh
Confidence            4699999999999999999999999999864   233467788999999999988      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      -+.|++.+.|-...-.++|+...+-++.||+.|                       |.|||-++|+|.|+||.|+.|.+-
T Consensus       644 Kl~GDMLEMILSsEkgRL~er~TkFlvtQIL~A-----------------------Lr~LH~knIvHCDLKPENVLLas~  700 (888)
T KOG4236|consen  644 KLHGDMLEMILSSEKGRLPERITKFLVTQILVA-----------------------LRYLHFKNIVHCDLKPENVLLASA  700 (888)
T ss_pred             hhcchHHHHHHHhhcccchHHHHHHHHHHHHHH-----------------------HHHhhhcceeeccCCchheeeccC
Confidence            999999999887755678888888888888877                       999999999999999999999830


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       701 --------------------------------------------------------------------------------  700 (888)
T KOG4236|consen  701 --------------------------------------------------------------------------------  700 (888)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                  ..-..+||+|||++++.+.  -..+.+|||.|+|||++...+|+...|+||+|+++|..+.|.+||+.
T Consensus       701 ------------~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLrnkGyNrSLDMWSVGVIiYVsLSGTFPFNE  768 (888)
T KOG4236|consen  701 ------------SPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKGYNRSLDMWSVGVIIYVSLSGTFPFNE  768 (888)
T ss_pred             ------------CCCCceeeccccceeecchhhhhhhhcCCccccCHHHHhhccccccccceeeeEEEEEEecccccCCC
Confidence                        0235799999999998654  34678999999999999999999999999999999999999999976


Q ss_pred             cC-CCceeeecccCCcccccccccccccCccC
Q psy2006         317 KT-KTKYFYHGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       317 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      +. -.+.+.+..+-++..+|.  .|+.+|-||
T Consensus       769 dEdIndQIQNAaFMyPp~PW~--eis~~Aidl  798 (888)
T KOG4236|consen  769 DEDINDQIQNAAFMYPPNPWS--EISPEAIDL  798 (888)
T ss_pred             ccchhHHhhccccccCCCchh--hcCHHHHHH
Confidence            54 444555666666666665  677777655

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=3.8e-35  Score=279.28  Aligned_cols=231  Identities=21%  Similarity=0.308  Sum_probs=164.2

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||+|+||+||+|++..+++.||+|++.+..    .....+.+|+.+|+.+.|++      |+++++.|..++++|+|
T Consensus         6 ~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~------iv~~~~~~~~~~~~~lv   79 (376)
T cd05598           6 IKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEW------VVKLYYSFQDKDNLYFV   79 (376)
T ss_pred             EEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCC------cceEEEEEEcCCEEEEE
Confidence            468999999999999999999999999997532    23456778999999999877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe--
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI--  153 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni--  153 (351)
                      |||+ +++|.+++...+  .+++..++.++.|++.|                       |+|||++|++|||+|++|+  
T Consensus        80 ~E~~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~ivHrDlkp~Nill  134 (376)
T cd05598          80 MDYIPGGDMMSLLIRLG--IFEEDLARFYIAELTCA-----------------------IESVHKMGFIHRDIKPDNILI  134 (376)
T ss_pred             EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeCCCCHHHEEE
Confidence            9999 999999998764  57888888888888888                       9999999999999998774  


Q ss_pred             ------EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         154 ------RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       154 ------~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                            +|+|||+|..........     +..+.......                                   .....
T Consensus       135 ~~~~~ikL~DFG~a~~~~~~~~~~-----~~~~~~~~~~~-----------------------------------~~~~~  174 (376)
T cd05598         135 DRDGHIKLTDFGLCTGFRWTHDSK-----YYQKGDHHRQD-----------------------------------SMEPS  174 (376)
T ss_pred             CCCCCEEEEeCCCCcccccccccc-----ccccccccccc-----------------------------------ccccc
Confidence                  778899875432111100     00000000000                                   00000


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCc---ceeccccccccccceeeCceeeecCCCCCccceeeeeeee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCII  304 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~---~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l  304 (351)
                      ..   .               .  .............   ..........+||+.|+|||++.+..++.++|+||+||++
T Consensus       175 ~~---~---------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil  234 (376)
T cd05598         175 EE---W---------------S--EIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVIL  234 (376)
T ss_pred             cc---c---------------c--ccccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeecccee
Confidence            00   0               0  0000000000000   0011122346899999999999999999999999999999


Q ss_pred             EeeccccccccccCCCce
Q psy2006         305 FELYLGITLMARKTKTKY  322 (351)
Q Consensus       305 ~~l~tG~~pf~~~~~~~~  322 (351)
                      |+|++|..||.+.+..+.
T Consensus       235 yell~G~~Pf~~~~~~~~  252 (376)
T cd05598         235 YEMLVGQPPFLADTPAET  252 (376)
T ss_pred             eehhhCCCCCCCCCHHHH
Confidence            999999999988775543

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0192|consensus

Probab=100.00  E-value=2.7e-35  Score=275.06  Aligned_cols=194  Identities=20%  Similarity=0.270  Sum_probs=169.5

Q ss_pred             ccccCcccceEEEEEEeecCcE-EEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-eEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSV-VALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-HMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~-vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-~~~lV   76 (351)
                      +.||.|+||+||+|.  +.|.. ||+|++....   ...+.+.+|+.+|.+++|+|      ||++++++..+. .+|||
T Consensus        47 ~~iG~G~~g~V~~~~--~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpN------IV~f~G~~~~~~~~~~iV  118 (362)
T KOG0192|consen   47 EVLGSGSFGTVYKGK--WRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPN------IVQFYGACTSPPGSLCIV  118 (362)
T ss_pred             hhcccCCceeEEEEE--eCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCC------eeeEEEEEcCCCCceEEE
Confidence            459999999999999  56776 9999998642   22558899999999999988      999999999988 89999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc-ccccccCCCCeE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK-REVRRVRRCDIR  154 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~-i~h~d~k~~ni~  154 (351)
                      |||+ +|+|.+++.......++...+..++.+|+.|                       ++|||+++ |+|||+|+.|+.
T Consensus       119 tEy~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArG-----------------------m~YLH~~~~iIHrDLK~~NiL  175 (362)
T KOG0192|consen  119 TEYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARG-----------------------MEYLHSEGPIIHRDLKSDNIL  175 (362)
T ss_pred             EEeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHH-----------------------HHHHhcCCCeeecccChhhEE
Confidence            9999 9999999998544578899999999999888                       99999999 999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       176 v~------------------------------------------------------------------------------  177 (362)
T KOG0192|consen  176 VD------------------------------------------------------------------------------  177 (362)
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            87                                                                              


Q ss_pred             hhhhhhccchhhhhhhcccc-ceeeeccCCcceec---cccccccccceeeCceeee--cCCCCCccceeeeeeeeEeec
Q psy2006         235 QADRILSSVSSLVMRRVRRC-DIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVIL--ELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~-~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~--~~~~~~~~DiwslG~~l~~l~  308 (351)
                                       ... .+||+|||+++...   ...+...||+.|||||++.  ...++.++|+||||+++||++
T Consensus       178 -----------------~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~~~~~~K~DvySFgIvlWEl~  240 (362)
T KOG0192|consen  178 -----------------LKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEKSPYTEKSDVYSFGIVLWELL  240 (362)
T ss_pred             -----------------CCCCEEEECCCccceeeccccccccCCCCCccccChhhhcCCCCcCCccchhhhHHHHHHHHH
Confidence                             122 79999999998744   3445579999999999999  568999999999999999999


Q ss_pred             cccccccccCCCc
Q psy2006         309 LGITLMARKTKTK  321 (351)
Q Consensus       309 tG~~pf~~~~~~~  321 (351)
                      ||..||.+.+...
T Consensus       241 t~~~Pf~~~~~~~  253 (362)
T KOG0192|consen  241 TGEIPFEDLAPVQ  253 (362)
T ss_pred             HCCCCCCCCCHHH
Confidence            9999999988633

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.9e-36  Score=281.97  Aligned_cols=230  Identities=23%  Similarity=0.320  Sum_probs=163.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||.|+||+||+|++..+++.||||++....    .....+.+|+.+|+.+.|++      |++++++|..++++|+|
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~------iv~~~~~~~~~~~~~lv   79 (364)
T cd05599           6 IKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPW------VVKLYYSFQDENYLYLI   79 (364)
T ss_pred             EEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCC------CcceEEEEEcCCeEEEE
Confidence            368999999999999999999999999997532    23345678999999998877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe--
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI--  153 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni--  153 (351)
                      |||+ +++|.+++....  .+++..++.++.|++.|                       |+|||+.|++|||+|++|+  
T Consensus        80 ~E~~~~g~L~~~l~~~~--~l~~~~~~~~~~qi~~a-----------------------L~~lH~~~ivH~Dlkp~NIl~  134 (364)
T cd05599          80 MEYLPGGDMMTLLMKKD--TFTEEETRFYIAETILA-----------------------IDSIHKLGYIHRDIKPDNLLL  134 (364)
T ss_pred             ECCCCCcHHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeccCCHHHeEE
Confidence            9999 899999998764  57888888888888888                       9999999999999998775  


Q ss_pred             ------EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         154 ------RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       154 ------~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                            +|+|||++...........    +.   ...                                 +.    ..  
T Consensus       135 ~~~~~~kl~Dfg~~~~~~~~~~~~~----~~---~~~---------------------------------~~----~~--  168 (364)
T cd05599         135 DAKGHIKLSDFGLCTGLKKSHRTEF----YR---ILS---------------------------------HA----LP--  168 (364)
T ss_pred             CCCCCEEEeecccceeccccccccc----cc---ccc---------------------------------cc----cc--
Confidence                  6778887754221111000    00   000                                 00    00  


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                           ........     .+    .........+..  .........+||+.|+|||++.+..++.++|+|||||++|+|
T Consensus       169 -----~~~~~~~~-----~~----~~~~~~~~~~~~--~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el  232 (364)
T cd05599         169 -----SNFLDFIS-----KP----MSSKRKAETWKR--NRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEM  232 (364)
T ss_pred             -----cccccccc-----cc----ccccccccchhh--cccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHh
Confidence                 00000000     00    000000000000  000112345799999999999988999999999999999999


Q ss_pred             ccccccccccCCCcee
Q psy2006         308 YLGITLMARKTKTKYF  323 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~~  323 (351)
                      ++|..||.+.+..+.+
T Consensus       233 ~~G~~Pf~~~~~~~~~  248 (364)
T cd05599         233 LVGYPPFCSDNPQETY  248 (364)
T ss_pred             hcCCCCCCCCCHHHHH
Confidence            9999999887765443

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG0578|consensus

Probab=100.00  E-value=5.2e-36  Score=281.50  Aligned_cols=205  Identities=20%  Similarity=0.291  Sum_probs=174.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||+|+.|.||.|....+++.||||.+.... ...+-+..|+.+|+...|+|      ||..++.|...+.+|.||||+
T Consensus       279 ~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~N------iVnfl~Sylv~deLWVVMEym  352 (550)
T KOG0578|consen  279 KKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPN------IVNFLDSYLVGDELWVVMEYM  352 (550)
T ss_pred             hhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchH------HHHHHHHhcccceeEEEEeec
Confidence            68999999999999999999999999997643 44566789999999999888      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       ||+|.|.+....   +.|.++..+++.++.|                       |+|||.+||+|||+|.+||.|.   
T Consensus       353 ~ggsLTDvVt~~~---~~E~qIA~Icre~l~a-----------------------L~fLH~~gIiHrDIKSDnILL~---  403 (550)
T KOG0578|consen  353 EGGSLTDVVTKTR---MTEGQIAAICREILQG-----------------------LKFLHARGIIHRDIKSDNILLT---  403 (550)
T ss_pred             CCCchhhhhhccc---ccHHHHHHHHHHHHHH-----------------------HHHHHhcceeeeccccceeEec---
Confidence             999999987764   5555555555555555                       9999999999999999999988   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       404 --------------------------------------------------------------------------------  403 (550)
T KOG0578|consen  404 --------------------------------------------------------------------------------  403 (550)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                  ..+.+||+|||+|.....   ...+.+|||.|||||++....|++++||||||++++||+-|++||-.
T Consensus       404 ------------~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPYln  471 (550)
T KOG0578|consen  404 ------------MDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPYLN  471 (550)
T ss_pred             ------------cCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCccC
Confidence                        246799999999976433   44678999999999999999999999999999999999999999987


Q ss_pred             cCCCceee----ecccCCccc
Q psy2006         317 KTKTKYFY----HGKLDWDEK  333 (351)
Q Consensus       317 ~~~~~~~~----~~~~~~~~~  333 (351)
                      .+.-..++    +|.......
T Consensus       472 E~PlrAlyLIa~ng~P~lk~~  492 (550)
T KOG0578|consen  472 ENPLRALYLIATNGTPKLKNP  492 (550)
T ss_pred             CChHHHHHHHhhcCCCCcCCc
Confidence            76655543    465544433

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.2e-35  Score=279.11  Aligned_cols=239  Identities=20%  Similarity=0.270  Sum_probs=164.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||.|+||+||+|.+..+++.||||++.+..    ...+.+.+|+++++.+.|++      |++++++|..+.++|+|
T Consensus         6 ~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~------iv~~~~~~~~~~~~~lv   79 (377)
T cd05629           6 VKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPW------VVSLYYSFQDAQYLYLI   79 (377)
T ss_pred             eEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCC------cceEEEEEEcCCeeEEE
Confidence            468999999999999999999999999997532    22346778999999998877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe--
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI--  153 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni--  153 (351)
                      |||+ +++|.+++....  .+++..++.++.|++.|                       |+|||+.|++|||+|+.|+  
T Consensus        80 ~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~ql~~a-----------------------L~~LH~~givHrDlkp~NIll  134 (377)
T cd05629          80 MEFLPGGDLMTMLIKYD--TFSEDVTRFYMAECVLA-----------------------IEAVHKLGFIHRDIKPDNILI  134 (377)
T ss_pred             EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccCCCHHHEEE
Confidence            9999 899999998754  57888888888888888                       9999999999999998775  


Q ss_pred             ------EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         154 ------RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       154 ------~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                            +|+|||+|+........    ..|.                                            .....
T Consensus       135 ~~~~~~kl~DfGla~~~~~~~~~----~~~~--------------------------------------------~~~~~  166 (377)
T cd05629         135 DRGGHIKLSDFGLSTGFHKQHDS----AYYQ--------------------------------------------KLLQG  166 (377)
T ss_pred             CCCCCEEEeeccccccccccccc----cccc--------------------------------------------ccccc
Confidence                  67899988542111100    0000                                            00000


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                      ..................   ........++.+++...  .......+||+.|+|||++.+..++.++|+||+||++|+|
T Consensus       167 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~el  241 (377)
T cd05629         167 KSNKNRIDNRNSVAVDSI---NLTMSSKDQIATWKKNR--RLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFEC  241 (377)
T ss_pred             cccccccccccccccccc---cccccchhhhhhhhhcc--cccccccCCCccccCHHHHccCCCCCceeeEecchhhhhh
Confidence            000000000000000000   00000000111111110  0011245799999999999988999999999999999999


Q ss_pred             ccccccccccCCCcee
Q psy2006         308 YLGITLMARKTKTKYF  323 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~~  323 (351)
                      ++|.+||.+.+..+.+
T Consensus       242 ltG~~Pf~~~~~~~~~  257 (377)
T cd05629         242 LIGWPPFCSENSHETY  257 (377)
T ss_pred             hcCCCCCCCCCHHHHH
Confidence            9999999887665543

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=4.3e-35  Score=277.31  Aligned_cols=226  Identities=20%  Similarity=0.306  Sum_probs=164.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||+|+||+||+|.+..+++.||+|++....    .....+..|+.++..+.|++      |+++++.|...+++|+|
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------iv~~~~~~~~~~~~~lv   79 (360)
T cd05627           6 LKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAW------VVKMFYSFQDKRNLYLI   79 (360)
T ss_pred             EEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCC------EeeEEEEEEcCCEEEEE
Confidence            367999999999999999999999999997532    23356678999999998877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe--
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI--  153 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni--  153 (351)
                      |||+ |++|.+++....  .+++..++.++.|++.+                       |+|||++|++|||+|++|+  
T Consensus        80 ~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~~-----------------------L~~lH~~givHrDLkp~NIli  134 (360)
T cd05627          80 MEFLPGGDMMTLLMKKD--TLSEEATQFYIAETVLA-----------------------IDAIHQLGFIHRDIKPDNLLL  134 (360)
T ss_pred             EeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEccCCCHHHEEE
Confidence            9999 899999998764  57888888888888887                       9999999999999998775  


Q ss_pred             ------EEeecCCcccCCCCccc-ccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         154 ------RLIDFGSATFDDEHHST-IVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       154 ------~l~Dfg~s~~~~~~~~~-~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                            +|+|||+++........ .........|...                                           
T Consensus       135 ~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------  171 (360)
T cd05627         135 DAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDF-------------------------------------------  171 (360)
T ss_pred             CCCCCEEEeeccCCcccccccccccccccccCCcccc-------------------------------------------
Confidence                  67888887543222110 0000000000000                                           


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                    ...+       .....+...+  ...........+||+.|+|||++.+..++.++|+||+||++|+
T Consensus       172 --------------~~~~-------~~~~~~~~~~--~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilye  228 (360)
T cd05627         172 --------------SFQN-------MNSKRKAETW--KKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYE  228 (360)
T ss_pred             --------------cccc-------cccccccccc--cccccccccccCCCccccCHHHHcCCCCCCcceeccccceeee
Confidence                          0000       0000000000  0001111234679999999999999999999999999999999


Q ss_pred             eccccccccccCCCcee
Q psy2006         307 LYLGITLMARKTKTKYF  323 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~~  323 (351)
                      |++|.+||.+.+..+.+
T Consensus       229 l~tG~~Pf~~~~~~~~~  245 (360)
T cd05627         229 MLIGYPPFCSETPQETY  245 (360)
T ss_pred             cccCCCCCCCCCHHHHH
Confidence            99999999988766554

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.9e-35  Score=274.64  Aligned_cols=197  Identities=22%  Similarity=0.275  Sum_probs=171.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||.|+||.||+|++..+++.||+|++....    .....+..|+.+++.+.|++      |++++++|...++.|||
T Consensus         6 ~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~------iv~~~~~~~~~~~~~lv   79 (333)
T cd05600           6 LTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEW------LVKLLYAFQDDEYLYLA   79 (333)
T ss_pred             EEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCC------CccEEEEEEcCCEEEEE
Confidence            367999999999999998899999999997542    23456778999999998777      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..++.++.|++.+                       |.|||+.|++|||+|+.|+.+
T Consensus        80 ~e~~~g~~L~~~l~~~~--~l~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~dlkp~Nil~  134 (333)
T cd05600          80 MEYVPGGDFRTLLNNLG--VLSEDHARFYMAEMFEA-----------------------VDALHELGYIHRDLKPENFLI  134 (333)
T ss_pred             EeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCCHHHEEE
Confidence            9999 899999998764  57888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       135 ~-------------------------------------------------------------------------------  135 (333)
T cd05600         135 D-------------------------------------------------------------------------------  135 (333)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                      ..+.+||+|||++...........||+.|+|||.+.+..++.++|+||+||++|+|++|..||.
T Consensus       136 ----------------~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~  199 (333)
T cd05600         136 ----------------ASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFS  199 (333)
T ss_pred             ----------------CCCCEEEEeCcCCcccccccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCC
Confidence                            2356999999998765555566789999999999998899999999999999999999999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      ..+..+.+
T Consensus       200 ~~~~~~~~  207 (333)
T cd05600         200 GSTPNETW  207 (333)
T ss_pred             CCCHHHHH
Confidence            87765543

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=6.1e-35  Score=272.28  Aligned_cols=195  Identities=21%  Similarity=0.277  Sum_probs=167.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||.||+|.+..+++.||+|++....    .......+|+.+++.+.|++      |+++++.|..++++|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~------i~~~~~~~~~~~~~~lv~   74 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPF------LTALKYSFQTHDRLCFVM   74 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCC------CCCEEEEEEcCCEEEEEE
Confidence            47999999999999999999999999997532    23345678999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..++.++.|++.|                       |+|||+.|++|||+|+.||.+.
T Consensus        75 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------L~~lH~~~ivHrDlkp~NIll~  129 (323)
T cd05571          75 EYANGGELFFHLSRER--VFSEDRARFYGAEIVSA-----------------------LGYLHSCDVVYRDLKLENLMLD  129 (323)
T ss_pred             eCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEeCCCCHHHEEEC
Confidence            999 899999988754  57888888888888887                       9999999999999999999875


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (323)
T cd05571         130 --------------------------------------------------------------------------------  129 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ..+.+||+|||++...   .......+||+.|+|||.+.+..++.++|+||+||++|+|++|..|
T Consensus       130 ---------------~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~P  194 (323)
T cd05571         130 ---------------KDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP  194 (323)
T ss_pred             ---------------CCCCEEEeeCCCCcccccCCCcccceecCccccChhhhcCCCCCccccCcccchhhhhhhcCCCC
Confidence                           2356899999988642   2223446799999999999999999999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |.+.+....
T Consensus       195 f~~~~~~~~  203 (323)
T cd05571         195 FYNQDHEKL  203 (323)
T ss_pred             CCCCCHHHH
Confidence            987665443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0201|consensus

Probab=100.00  E-value=2.1e-36  Score=276.21  Aligned_cols=198  Identities=25%  Similarity=0.340  Sum_probs=172.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++.||+|+||.||+|.+..+++.||+|++..+.  ...+.+.+|+.+|.++.+++      |..++..|..+..+|++||
T Consensus        18 ~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~------it~yygsyl~g~~LwiiMe   91 (467)
T KOG0201|consen   18 LELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPN------ITEYYGSYLKGTKLWIIME   91 (467)
T ss_pred             chhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcch------HHhhhhheeecccHHHHHH
Confidence            468999999999999999999999999998653  45567889999999999877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      || ||++.+.++...  .+.|..+-.++++++.|                       |.|+|.++.+|||+|..|+.+. 
T Consensus        92 y~~gGsv~~lL~~~~--~~~E~~i~~ilre~l~~-----------------------l~ylH~~~kiHrDIKaanil~s-  145 (467)
T KOG0201|consen   92 YCGGGSVLDLLKSGN--ILDEFEIAVILREVLKG-----------------------LDYLHSEKKIHRDIKAANILLS-  145 (467)
T ss_pred             HhcCcchhhhhccCC--CCccceeeeehHHHHHH-----------------------hhhhhhcceecccccccceeEe-
Confidence            99 999999998876  22454455555555555                       9999999999999999999887 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (467)
T KOG0201|consen  146 --------------------------------------------------------------------------------  145 (467)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ..+.+|++|||.+.+.+.   ...+.+|||.|||||++.+..|+.++||||||++.+||++|.+|+
T Consensus       146 --------------~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~  211 (467)
T KOG0201|consen  146 --------------ESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPH  211 (467)
T ss_pred             --------------ccCcEEEEecceeeeeechhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCC
Confidence                          236899999999866332   336799999999999999999999999999999999999999999


Q ss_pred             cccCCCceee
Q psy2006         315 ARKTKTKYFY  324 (351)
Q Consensus       315 ~~~~~~~~~~  324 (351)
                      .....+.+++
T Consensus       212 s~~hPmrvlf  221 (467)
T KOG0201|consen  212 SKLHPMRVLF  221 (467)
T ss_pred             cccCcceEEE
Confidence            9999998875

>KOG0580|consensus

Probab=100.00  E-value=1.4e-36  Score=257.62  Aligned_cols=218  Identities=17%  Similarity=0.276  Sum_probs=189.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh----hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK----YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~----~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||.|-||.||+|+.++++-.||+|++-+++.    -...+.+|+.|-++|+|+|      |.++|.+|.+...+||++
T Consensus        28 r~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpn------ilrlY~~fhd~~riyLil  101 (281)
T KOG0580|consen   28 RPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPN------ILRLYGYFHDSKRIYLIL  101 (281)
T ss_pred             ccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCcc------HHhhhhheeccceeEEEE
Confidence            679999999999999999999999999976542    2346788999999999988      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||. .|+++..++......+.+..+..++.|++.|                       |.|||.++|+|||+||.|+.++
T Consensus       102 Eya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~A-----------------------l~y~h~k~VIhRdiKpenlLlg  158 (281)
T KOG0580|consen  102 EYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANA-----------------------LLYCHLKRVIHRDIKPENLLLG  158 (281)
T ss_pred             EecCCchHHHHHHhcccccccccchhHHHHHHHHH-----------------------HHHhccCCcccCCCCHHHhccC
Confidence            999 9999999997776678888888888888887                       9999999999999999999887


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (281)
T KOG0580|consen  159 --------------------------------------------------------------------------------  158 (281)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCccee-ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFD-DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                     +.+.+|++|||.+-.. .....+.|||.-|.+||.+.+..++..+|+|++|++.||++.|.+||.
T Consensus       159 ---------------~~~~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pEmv~~~~hd~~Vd~w~lgvl~yeflvg~ppFe  223 (281)
T KOG0580|consen  159 ---------------SAGELKIADFGWSVHAPSNKRKTLCGTLDYLPPEMVEGRGHDKFVDLWSLGVLCYEFLVGLPPFE  223 (281)
T ss_pred             ---------------CCCCeeccCCCceeecCCCCceeeecccccCCHhhcCCCCccchhhHHHHHHHHHHHHhcCCchh
Confidence                           4578999999998765 445577999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeee-cccCCcccccccccccccCccC
Q psy2006         316 RKTKTKYFYH-GKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       316 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      ..+..++|-. .+.+...+    ..|+.+|+||
T Consensus       224 s~~~~etYkrI~k~~~~~p----~~is~~a~dl  252 (281)
T KOG0580|consen  224 SQSHSETYKRIRKVDLKFP----STISGGAADL  252 (281)
T ss_pred             hhhhHHHHHHHHHccccCC----cccChhHHHH
Confidence            9998888753 33333333    3577777765

>KOG0599|consensus

Probab=100.00  E-value=1.8e-36  Score=261.51  Aligned_cols=219  Identities=25%  Similarity=0.376  Sum_probs=189.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---------hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---------EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---------~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~   72 (351)
                      +.||.|..++|.++..+.+++.+|+|++...         ..-.+...+|+.||+++.     ||.+|+.+.|+|+.+..
T Consensus        23 eilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~-----GHP~II~l~D~yes~sF   97 (411)
T KOG0599|consen   23 EILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVM-----GHPYIIDLQDVYESDAF   97 (411)
T ss_pred             HHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhc-----CCCcEEEeeeeccCcch
Confidence            4689999999999999999999999999642         122345578999999985     33339999999999999


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +++|+|.| .|.|+|++....  .++|..++++|+|++++                       +.|+|.++|+|||+|+.
T Consensus        98 ~FlVFdl~prGELFDyLts~V--tlSEK~tR~iMrqlfeg-----------------------VeylHa~~IVHRDLKpE  152 (411)
T KOG0599|consen   98 VFLVFDLMPRGELFDYLTSKV--TLSEKETRRIMRQLFEG-----------------------VEYLHARNIVHRDLKPE  152 (411)
T ss_pred             hhhhhhhcccchHHHHhhhhe--eecHHHHHHHHHHHHHH-----------------------HHHHHHhhhhhcccChh
Confidence            99999999 899999998874  58888899999988888                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.+.|                                                                          
T Consensus       153 NILldd--------------------------------------------------------------------------  158 (411)
T KOG0599|consen  153 NILLDD--------------------------------------------------------------------------  158 (411)
T ss_pred             heeecc--------------------------------------------------------------------------
Confidence            999884                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcce--eccccccccccceeeCceeee------cCCCCCccceeeeeee
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVIL------ELGWAQPCDVWSIGCI  303 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~--~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DiwslG~~  303 (351)
                                           ..+++|+|||++..  .+......||||.|+|||.+.      ..+|+..+|+|++|++
T Consensus       159 ---------------------n~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVI  217 (411)
T KOG0599|consen  159 ---------------------NMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVI  217 (411)
T ss_pred             ---------------------ccceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHH
Confidence                                 45799999999876  456678899999999999887      3478999999999999


Q ss_pred             eEeeccccccccccCCCceee---ecccCCcccccccccccccCccC
Q psy2006         304 IFELYLGITLMARKTKTKYFY---HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      +|.++.|-+||......--+.   +|++.|....|.  .+|+++|||
T Consensus       218 myTLLaGcpPFwHRkQmlMLR~ImeGkyqF~speWa--dis~~~KdL  262 (411)
T KOG0599|consen  218 MYTLLAGCPPFWHRKQMLMLRMIMEGKYQFRSPEWA--DISATVKDL  262 (411)
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHHhcccccCCcchh--hccccHHHH
Confidence            999999999998876554432   799999999998  889999987

>KOG0589|consensus

Probab=100.00  E-value=2.1e-35  Score=275.40  Aligned_cols=199  Identities=23%  Similarity=0.363  Sum_probs=179.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCe-EEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH-MCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~-~~lV   76 (351)
                      +++||.|+||.+++++.+.+++.|++|.+...   ...++.+..|+.+++++.|++      ||.++|.|..++. +|||
T Consensus         9 ~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~------iv~y~ds~~~~~~~l~Iv   82 (426)
T KOG0589|consen    9 LRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPN------IVEYKDSFEEDGQLLCIV   82 (426)
T ss_pred             hhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCC------eeeeccchhcCCceEEEE
Confidence            57899999999999999999999999999754   244557899999999999888      9999999999997 9999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |+|| ||++.+.+++.+...++++.+..++.|++.|                       +.|||+..|+|||+|..|+++
T Consensus        83 m~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~a-----------------------v~ylH~~~iLHRDlK~~Nifl  139 (426)
T KOG0589|consen   83 MEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLA-----------------------VNYLHENRVLHRDLKCANIFL  139 (426)
T ss_pred             EeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHH-----------------------HHHHHhhhhhcccchhhhhhc
Confidence            9999 9999999999987789999999999999988                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       140 t-------------------------------------------------------------------------------  140 (426)
T KOG0589|consen  140 T-------------------------------------------------------------------------------  140 (426)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            7                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ....|+|+|||+++..+.   ...+.+|||.|++||++.+.+|+.++|+|||||++|||++=++
T Consensus       141 ----------------k~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~  204 (426)
T KOG0589|consen  141 ----------------KDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKP  204 (426)
T ss_pred             ----------------ccCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhccc
Confidence                            345689999999987433   4567999999999999999999999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      +|...+-....
T Consensus       205 aF~a~~m~~Li  215 (426)
T KOG0589|consen  205 AFKASNMSELI  215 (426)
T ss_pred             ccCccchHHHH
Confidence            99988766554

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=5.4e-35  Score=273.34  Aligned_cols=196  Identities=21%  Similarity=0.320  Sum_probs=170.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||.|+||+||+|++..+++.||+|++....    ...+.+.+|+++++.++|+|      |++++++|..++++|+||
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~   97 (329)
T PTZ00263         24 ETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPF------IVNMMCSFQDENRVYFLL   97 (329)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCC------CCcEEEEEEcCCEEEEEE
Confidence            57999999999999999999999999997532    23356788999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+.
T Consensus        98 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivH~dlkp~NIll~  152 (329)
T PTZ00263         98 EFVVGGELFTHLRKAG--RFPNDVAKFYHAELVLA-----------------------FEYLHSKDIIYRDLKPENLLLD  152 (329)
T ss_pred             cCCCCChHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecCCCHHHEEEC
Confidence            999 899999998764  57788888888887777                       9999999999999999999876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (329)
T PTZ00263        153 --------------------------------------------------------------------------------  152 (329)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                     ..+.+||+|||++...........||+.|+|||.+.+..++.++|+|||||++|+|++|..||.+
T Consensus       153 ---------------~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~  217 (329)
T PTZ00263        153 ---------------NKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFD  217 (329)
T ss_pred             ---------------CCCCEEEeeccCceEcCCCcceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCC
Confidence                           23568999999987655555567899999999999998899999999999999999999999987


Q ss_pred             cCCCcee
Q psy2006         317 KTKTKYF  323 (351)
Q Consensus       317 ~~~~~~~  323 (351)
                      .+..+.+
T Consensus       218 ~~~~~~~  224 (329)
T PTZ00263        218 DTPFRIY  224 (329)
T ss_pred             CCHHHHH
Confidence            7654443

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=4.8e-34  Score=266.43  Aligned_cols=195  Identities=22%  Similarity=0.291  Sum_probs=166.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|.+..+++.||+|++....    ........|+++++.+.|++      |+++++.|..++++|+||
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~------i~~~~~~~~~~~~~~lv~   74 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPF------LTALKYSFQTHDRLCFVM   74 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCC------CCceEEEEEcCCEEEEEE
Confidence            57999999999999999999999999997532    22345678999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeEE
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIRL  155 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~l  155 (351)
                      ||+ +++|.+++....  .+++..++.++.|++.|                       |+|||+ .|++|||+|+.||.+
T Consensus        75 E~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~a-----------------------L~~lH~~~~ivHrDikp~NIll  129 (325)
T cd05594          75 EYANGGELFFHLSRER--VFSEDRARFYGAEIVSA-----------------------LDYLHSEKNVVYRDLKLENLML  129 (325)
T ss_pred             eCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhcCCEEecCCCCCeEEE
Confidence            999 899999887654  57888888888888888                       999997 799999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (325)
T cd05594         130 D-------------------------------------------------------------------------------  130 (325)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   ........||+.|+|||++.+..++.++|+||+||++|+|++|..
T Consensus       131 ----------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~tG~~  194 (325)
T cd05594         131 ----------------KDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL  194 (325)
T ss_pred             ----------------CCCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCCCCCccccccccceeeeeccCCC
Confidence                            2356999999988642   222234679999999999998899999999999999999999999


Q ss_pred             cccccCCCce
Q psy2006         313 LMARKTKTKY  322 (351)
Q Consensus       313 pf~~~~~~~~  322 (351)
                      ||.+.+..+.
T Consensus       195 Pf~~~~~~~~  204 (325)
T cd05594         195 PFYNQDHEKL  204 (325)
T ss_pred             CCCCCCHHHH
Confidence            9987765443

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG0582|consensus

Probab=100.00  E-value=1.2e-34  Score=265.09  Aligned_cols=199  Identities=23%  Similarity=0.304  Sum_probs=174.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||.|+-++||+|+...++++||||+++.+  +.+-+.+.+|++.|+.+.|+|      |++++..|..+..+|+||+|
T Consensus        32 e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPN------Iv~~~~sFvv~~~LWvVmpf  105 (516)
T KOG0582|consen   32 EVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPN------IVTYHCSFVVDSELWVVMPF  105 (516)
T ss_pred             EEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCC------cceEEEEEEecceeEEeehh
Confidence            6799999999999999999999999999864  344578899999999999988      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      | +||+.++|+.....+++|..+..+.++++.|                       |+|||.+|-+|||+|.+||.|.  
T Consensus       106 Ma~GS~ldIik~~~~~Gl~E~~Ia~iLre~Lka-----------------------L~YLH~~G~IHRdvKAgnILi~--  160 (516)
T KOG0582|consen  106 MAGGSLLDIIKTYYPDGLEEASIATILREVLKA-----------------------LDYLHQNGHIHRDVKAGNILID--  160 (516)
T ss_pred             hcCCcHHHHHHHHccccccHHHHHHHHHHHHHH-----------------------HHHHHhcCceecccccccEEEc--
Confidence            9 9999999999876678888888888888887                       9999999999999999999887  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (516)
T KOG0582|consen  161 --------------------------------------------------------------------------------  160 (516)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcce-e--cc----ccccccccceeeCceeeec--CCCCCccceeeeeeeeEeecc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATF-D--DE----HHSTIVSTRHYRAPEVILE--LGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~-~--~~----~~~~~~gt~~y~aPE~~~~--~~~~~~~DiwslG~~l~~l~t  309 (351)
                                   ..+.|||+|||.+-. .  +.    .....+|||+|||||++.+  .+|+.|+||||||++..|+++
T Consensus       161 -------------~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~  227 (516)
T KOG0582|consen  161 -------------SDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAH  227 (516)
T ss_pred             -------------CCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhc
Confidence                         356799999997532 1  11    1156799999999999654  589999999999999999999


Q ss_pred             ccccccccCCCceee
Q psy2006         310 GITLMARKTKTKYFY  324 (351)
Q Consensus       310 G~~pf~~~~~~~~~~  324 (351)
                      |..||.....++.+.
T Consensus       228 G~aPf~k~pPmkvLl  242 (516)
T KOG0582|consen  228 GHAPFSKYPPMKVLL  242 (516)
T ss_pred             CCCCcccCChHHHHH
Confidence            999999999888653

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=1.3e-34  Score=275.06  Aligned_cols=195  Identities=20%  Similarity=0.276  Sum_probs=165.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||.||+|.+..+++.||+|++.+..    .....+.+|+.+++.+.|++      |+++++.|..+.++|+||
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~------iv~~~~~~~~~~~~~lv~  122 (370)
T cd05621          49 KVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW------VVQLFCAFQDDKYLYMVM  122 (370)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCC------EeeEEEEEEcCCEEEEEE
Confidence            57999999999999999999999999997532    22345678999999999888      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++...   .+++..++.++.|++.|                       |+|||+++++|||+|+.||.+.
T Consensus       123 Ey~~gg~L~~~l~~~---~~~~~~~~~~~~qil~a-----------------------L~~LH~~~IvHrDLKp~NILl~  176 (370)
T cd05621         123 EYMPGGDLVNLMSNY---DVPEKWAKFYTAEVVLA-----------------------LDAIHSMGLIHRDVKPDNMLLD  176 (370)
T ss_pred             cCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEecCCCHHHEEEC
Confidence            999 89999998764   47888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (370)
T cd05621         177 --------------------------------------------------------------------------------  176 (370)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCC----CCCccceeeeeeeeEeec
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELG----WAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~----~~~~~DiwslG~~l~~l~  308 (351)
                                     ..+.+||+|||++.....    ......||+.|+|||++.+.+    ++.++|+||+||++|+|+
T Consensus       177 ---------------~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~DiwSlG~ilyell  241 (370)
T cd05621         177 ---------------KHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEML  241 (370)
T ss_pred             ---------------CCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCCCCCcccCEEeehHHHHHHH
Confidence                           235689999999875322    123567999999999987643    688999999999999999


Q ss_pred             cccccccccCCCcee
Q psy2006         309 LGITLMARKTKTKYF  323 (351)
Q Consensus       309 tG~~pf~~~~~~~~~  323 (351)
                      +|..||.+.+..+.+
T Consensus       242 ~G~~Pf~~~~~~~~~  256 (370)
T cd05621         242 VGDTPFYADSLVGTY  256 (370)
T ss_pred             hCCCCCCCCCHHHHH
Confidence            999999887754443

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.7e-34  Score=271.09  Aligned_cols=195  Identities=23%  Similarity=0.344  Sum_probs=168.3

Q ss_pred             ccccCcccceEEEEEEeecC-cEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVD-SVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~-~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||.|+||.||+|.+..++ ..||+|++....    ...+.+.+|+.+++.+.|+|      |++++++|...+++|+|
T Consensus        36 ~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------Iv~~~~~~~~~~~~~lv  109 (340)
T PTZ00426         36 RTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPF------CVNLYGSFKDESYLYLV  109 (340)
T ss_pred             EEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCC------CcceEEEEEeCCEEEEE
Confidence            57999999999999976654 789999996532    23456778999999999887      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.+..  .+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+
T Consensus       110 ~Ey~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDLkp~NILl  164 (340)
T PTZ00426        110 LEFVIGGEFFTFLRRNK--RFPNDVGCFYAAQIVLI-----------------------FEYLQSLNIVYRDLKPENLLL  164 (340)
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEccCCCHHHEEE
Confidence            9999 899999998764  57888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       165 ~-------------------------------------------------------------------------------  165 (340)
T PTZ00426        165 D-------------------------------------------------------------------------------  165 (340)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                      ..+.++|+|||++...........||+.|+|||++.+..++.++|+||+||++|+|++|..||.
T Consensus       166 ----------------~~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~  229 (340)
T PTZ00426        166 ----------------KDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFY  229 (340)
T ss_pred             ----------------CCCCEEEecCCCCeecCCCcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCC
Confidence                            2356899999998765554556789999999999988889999999999999999999999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      +.+....
T Consensus       230 ~~~~~~~  236 (340)
T PTZ00426        230 ANEPLLI  236 (340)
T ss_pred             CCCHHHH
Confidence            8765443

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=3.5e-34  Score=262.36  Aligned_cols=195  Identities=21%  Similarity=0.282  Sum_probs=166.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||+|+||+||+|.+..+++.||+|++....    .....+.+|+.+++.+.|++      |+.+++.|..++++|+|
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~------iv~~~~~~~~~~~~~lv   78 (285)
T cd05631           5 YRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRF------VVSLAYAYETKDALCLV   78 (285)
T ss_pred             EEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCc------EEEEEEEEccCCeEEEE
Confidence            367999999999999999999999999997532    12235678999999998877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.......+++..+..++.|++.|                       |+|||+++++|||+|+.|+.+
T Consensus        79 ~e~~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~iiH~dikp~Nill  135 (285)
T cd05631          79 LTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCG-----------------------LEDLQRERIVYRDLKPENILL  135 (285)
T ss_pred             EEecCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEEeCCCCHHHEEE
Confidence            9999 8999988876554567888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       136 ~-------------------------------------------------------------------------------  136 (285)
T cd05631         136 D-------------------------------------------------------------------------------  136 (285)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                      ....++|+|||++.....  ......||+.|+|||.+.+..++.++|+||+||++|++++|..|
T Consensus       137 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~p  200 (285)
T cd05631         137 ----------------DRGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSP  200 (285)
T ss_pred             ----------------CCCCEEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCC
Confidence                            134689999999865322  22346789999999999999999999999999999999999999


Q ss_pred             ccccCC
Q psy2006         314 MARKTK  319 (351)
Q Consensus       314 f~~~~~  319 (351)
                      |.+.+.
T Consensus       201 f~~~~~  206 (285)
T cd05631         201 FRKRKE  206 (285)
T ss_pred             CCCCCc
Confidence            987654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=3.2e-34  Score=268.06  Aligned_cols=195  Identities=21%  Similarity=0.277  Sum_probs=167.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||.||++.+..+++.||+|++.+..    .....+.+|+++++.+.|++      |+++++.|...+++|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~   74 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPF------LTSLKYSFQTKDRLCFVM   74 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCC------CcceEEEEEcCCEEEEEE
Confidence            47999999999999999999999999997532    23346678999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.||.+.
T Consensus        75 Ey~~~g~L~~~l~~~~--~l~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDikp~NIll~  129 (328)
T cd05593          75 EYVNGGELFFHLSRER--VFSEDRTRFYGAEIVSA-----------------------LDYLHSGKIVYRDLKLENLMLD  129 (328)
T ss_pred             eCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEecccCHHHeEEC
Confidence            999 899999887654  57888888888888888                       9999999999999999999876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (328)
T cd05593         130 --------------------------------------------------------------------------------  129 (328)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ..+.+||+|||++....   .......||+.|+|||.+.+..++.++|+||+||++|+|++|..|
T Consensus       130 ---------------~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~P  194 (328)
T cd05593         130 ---------------KDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP  194 (328)
T ss_pred             ---------------CCCcEEEecCcCCccCCCcccccccccCCcCccChhhhcCCCCCccCCccccchHHHHHhhCCCC
Confidence                           23568999999886421   222346789999999999888899999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |...+..+.
T Consensus       195 f~~~~~~~~  203 (328)
T cd05593         195 FYNQDHEKL  203 (328)
T ss_pred             CCCCCHHHH
Confidence            987765544

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6e-35  Score=268.31  Aligned_cols=197  Identities=20%  Similarity=0.296  Sum_probs=170.2

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||.|+||+||+|.+..+++.||+|++....    ...+.+.+|+.+++.+.|+|      |+++++++...+++|+|
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~lv   79 (291)
T cd05612           6 IKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPF------IIRLFWTEHDQRFLYML   79 (291)
T ss_pred             eeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCc------HhhhHhhhccCCeEEEE
Confidence            367999999999999999899999999997532    23456788999999999887      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++...+  .+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+
T Consensus        80 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dlkp~NIli  134 (291)
T cd05612          80 MEYVPGGELFSYLRNSG--RFSNSTGLFYASEIVCA-----------------------LEYLHSKEIVYRDLKPENILL  134 (291)
T ss_pred             EeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecCCCHHHeEE
Confidence            9999 899999998764  57777788888887777                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       135 ~-------------------------------------------------------------------------------  135 (291)
T cd05612         135 D-------------------------------------------------------------------------------  135 (291)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                      ..+.+||+|||++...........||+.|+|||.+.+..++.++|+|||||++|+|++|..||.
T Consensus       136 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~  199 (291)
T cd05612         136 ----------------KEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFF  199 (291)
T ss_pred             ----------------CCCCEEEEecCcchhccCCcccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                            2356899999998765444455679999999999988889999999999999999999999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+.+
T Consensus       200 ~~~~~~~~  207 (291)
T cd05612         200 DDNPFGIY  207 (291)
T ss_pred             CCCHHHHH
Confidence            87765544

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=2.9e-34  Score=266.40  Aligned_cols=194  Identities=20%  Similarity=0.334  Sum_probs=166.1

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ||+|+||+||+|.+..+++.||+|++....    .......+|+.++++++|+|      |++++++|...+.+|+||||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e~   74 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPF------IVPLKFSFQSPEKLYLVLAF   74 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCc------EeceeeEEecCCeEEEEEcC
Confidence            799999999999999999999999997532    23355678999999998877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.|+.+.  
T Consensus        75 ~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~HrDlkp~Nili~--  127 (312)
T cd05585          75 INGGELFHHLQREG--RFDLSRARFYTAELLCA-----------------------LENLHKFNVIYRDLKPENILLD--  127 (312)
T ss_pred             CCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEeCCCCHHHeEEC--
Confidence            9 999999998754  57888888888888888                       9999999999999999999876  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (312)
T cd05585         128 --------------------------------------------------------------------------------  127 (312)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   ..+.++|+|||++....   .......||+.|+|||++.+..++.++|+||+||++|+|++|..||.
T Consensus       128 -------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~  194 (312)
T cd05585         128 -------------YQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFY  194 (312)
T ss_pred             -------------CCCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcC
Confidence                         23568999999886521   22234678999999999999899999999999999999999999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+.+
T Consensus       195 ~~~~~~~~  202 (312)
T cd05585         195 DENVNEMY  202 (312)
T ss_pred             CCCHHHHH
Confidence            76655443

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0607|consensus

Probab=100.00  E-value=2.2e-35  Score=259.71  Aligned_cols=223  Identities=20%  Similarity=0.326  Sum_probs=182.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+|+.|-.+++.+++..||||++.+.. ..+.++.+|+.++.+.+     ||.||++|+++|+++..+|||||-+
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cq-----gh~nilqLiefFEdd~~FYLVfEKm  158 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQ-----GHKNILQLIEFFEDDTRFYLVFEKM  158 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhc-----CCccHHHHHHHhcccceEEEEEecc
Confidence            46999999999999999999999999998764 44678899999998875     3444999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       ||+|.+.|+...  .+.|..+.++...+..|                       |+|||.+||.|||+||.||.-.+  
T Consensus       159 ~GGplLshI~~~~--~F~E~EAs~vvkdia~a-----------------------LdFlH~kgIAHRDlKPENiLC~~--  211 (463)
T KOG0607|consen  159 RGGPLLSHIQKRK--HFNEREASRVVKDIASA-----------------------LDFLHTKGIAHRDLKPENILCES--  211 (463)
T ss_pred             cCchHHHHHHHhh--hccHHHHHHHHHHHHHH-----------------------HHHHhhcCcccccCCccceeecC--
Confidence             999999999876  56777777777777666                       99999999999999999985331  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                          |                                                           
T Consensus       212 --------------------p-----------------------------------------------------------  212 (463)
T KOG0607|consen  212 --------------------P-----------------------------------------------------------  212 (463)
T ss_pred             --------------------C-----------------------------------------------------------
Confidence                                0                                                           


Q ss_pred             hccchhhhhhhccccceeeeccCCcce----------eccccccccccceeeCceeee-----cCCCCCccceeeeeeee
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATF----------DDEHHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCII  304 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~----------~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l  304 (351)
                                 +.-+.|||+||.+...          ......+.+|+..|||||++.     ..-|..+.|.||||+++
T Consensus       213 -----------n~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrCDlwSLGvIl  281 (463)
T KOG0607|consen  213 -----------NKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPEVVDVFVDQATFYDKRCDLWSLGVIL  281 (463)
T ss_pred             -----------CCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchhHHhhhccccccccccccHHHHHHHH
Confidence                       1234688888887542          112334678889999999775     23568999999999999


Q ss_pred             EeeccccccccccCCCce---------------e---eecccCCcccccccccccccCccCC
Q psy2006         305 FELYLGITLMARKTKTKY---------------F---YHGKLDWDEKGTAGRYVRENCKPLH  348 (351)
Q Consensus       305 ~~l~tG~~pf~~~~~~~~---------------~---~~~~~~~~~~~~~~~~~~~~~~~~~  348 (351)
                      |-|++|-+||.|..+.+.               |   .+|++.|+.+.|.  -||++||+|-
T Consensus       282 YImLsGYpPFvG~Cg~dCGWdrGe~Cr~CQ~~LFesIQEGkYeFPdkdWa--hIS~eakdli  341 (463)
T KOG0607|consen  282 YIMLSGYPPFVGHCGADCGWDRGEVCRVCQNKLFESIQEGKYEFPDKDWA--HISSEAKDLI  341 (463)
T ss_pred             HHHHhCCCCccCccCCcCCccCCCccHHHHHHHHHHHhccCCcCChhhhH--HhhHHHHHHH
Confidence            999999999999876542               1   2588899999998  8999999873

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=2e-34  Score=281.92  Aligned_cols=217  Identities=30%  Similarity=0.535  Sum_probs=174.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC-CeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH-GHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~-~~~~lV~E~~   80 (351)
                      ++||+|+||+||+|.+..+++.||||+++...........|+++++.+.+.+...+.+|+.++++|... +++|+|||++
T Consensus       135 ~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~~~  214 (467)
T PTZ00284        135 SLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVPKYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKY  214 (467)
T ss_pred             EEEEeccCEEEEEEEEcCCCeEEEEEEEecchhhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEecc
Confidence            579999999999999999999999999976444455667899999999877655566699999999865 4999999999


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeEEeecC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~l~Dfg  159 (351)
                      |++|.+++.+.+  .+++..++.++.|++.|                       |+|||+ .||+|||+|++||.+.+-|
T Consensus       215 g~~l~~~l~~~~--~l~~~~~~~i~~qi~~a-----------------------L~yLH~~~gIiHrDlKP~NILl~~~~  269 (467)
T PTZ00284        215 GPCLLDWIMKHG--PFSHRHLAQIIFQTGVA-----------------------LDYFHTELHLMHTDLKPENILMETSD  269 (467)
T ss_pred             CCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhcCCeecCCCCHHHEEEecCC
Confidence            999999988764  57888888888888887                       999998 5999999999999987422


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                      .......                                                                      .+.
T Consensus       270 ~~~~~~~----------------------------------------------------------------------~~~  279 (467)
T PTZ00284        270 TVVDPVT----------------------------------------------------------------------NRA  279 (467)
T ss_pred             ccccccc----------------------------------------------------------------------ccc
Confidence            1100000                                                                      000


Q ss_pred             hccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCC
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTK  319 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~  319 (351)
                      +         ....+.+||+|||.+..........+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+.+.
T Consensus       280 ~---------~~~~~~vkl~DfG~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~~  350 (467)
T PTZ00284        280 L---------PPDPCRVRICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHDN  350 (467)
T ss_pred             c---------CCCCceEEECCCCccccCccccccccCCccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCh
Confidence            0         0123579999999887655555667899999999999999999999999999999999999999988775


Q ss_pred             Cce
Q psy2006         320 TKY  322 (351)
Q Consensus       320 ~~~  322 (351)
                      .+.
T Consensus       351 ~~~  353 (467)
T PTZ00284        351 LEH  353 (467)
T ss_pred             HHH
Confidence            443

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=4.1e-34  Score=266.77  Aligned_cols=195  Identities=18%  Similarity=0.279  Sum_probs=166.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||.||++.+..+++.||+|++....    .......+|+++++.+.|++      |+++++.|..++++|+||
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------i~~~~~~~~~~~~~~lv~   74 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF------LTALKYAFQTHDRLCFVM   74 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCC------CcceeeEEecCCEEEEEE
Confidence            57999999999999999999999999997532    22345568999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.
T Consensus        75 E~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivH~Dlkp~NIll~  129 (323)
T cd05595          75 EYANGGELFFHLSRER--VFTEERARFYGAEIVSA-----------------------LEYLHSRDVVYRDIKLENLMLD  129 (323)
T ss_pred             eCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEecCCCHHHEEEc
Confidence            999 899999887654  57888888888888888                       9999999999999999999876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (323)
T cd05595         130 --------------------------------------------------------------------------------  129 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ....+||+|||++....   .......||+.|+|||.+.+..++.++|+|||||++|++++|..|
T Consensus       130 ---------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~g~~P  194 (323)
T cd05595         130 ---------------KDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP  194 (323)
T ss_pred             ---------------CCCCEEecccHHhccccCCCCccccccCCcCcCCcccccCCCCCchhchhhhHHHHHHHHhCCCC
Confidence                           23568999999876421   122346789999999999988999999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |...+..+.
T Consensus       195 f~~~~~~~~  203 (323)
T cd05595         195 FYNQDHERL  203 (323)
T ss_pred             CCCCCHHHH
Confidence            987765543

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0197|consensus

Probab=100.00  E-value=3.1e-34  Score=268.63  Aligned_cols=198  Identities=21%  Similarity=0.240  Sum_probs=171.7

Q ss_pred             CccccCcccceEEEEEEeecCc-EEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDS-VVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~-~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +++||+|.||+||+|.  +.+. .||+|.++......+.+.+|+++|++|+|++      ||+++++++.++-+||||||
T Consensus       211 ~~~LG~G~FG~V~~g~--~~~~~~vavk~ik~~~m~~~~f~~Ea~iMk~L~H~~------lV~l~gV~~~~~piyIVtE~  282 (468)
T KOG0197|consen  211 IRELGSGQFGEVWLGK--WNGSTKVAVKTIKEGSMSPEAFLREAQIMKKLRHEK------LVKLYGVCTKQEPIYIVTEY  282 (468)
T ss_pred             HHHhcCCccceEEEEE--EcCCCcccceEEeccccChhHHHHHHHHHHhCcccC------eEEEEEEEecCCceEEEEEe
Confidence            3689999999999999  4454 8999999876666788889999999999988      99999999998899999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + .|+|.++++......+...+...++.||++|                       ++||.+++++|||+..-||.+.  
T Consensus       283 m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeG-----------------------M~YLes~~~IHRDLAARNiLV~--  337 (468)
T KOG0197|consen  283 MPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEG-----------------------MAYLESKNYIHRDLAARNILVD--  337 (468)
T ss_pred             cccCcHHHHhhhcCCCccchHHHHHHHHHHHHH-----------------------HHHHHhCCccchhhhhhheeec--
Confidence            9 9999999998655678888888888888888                       9999999999999999999887  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       338 --------------------------------------------------------------------------------  337 (468)
T KOG0197|consen  338 --------------------------------------------------------------------------------  337 (468)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecccccc-ccc---cceeeCceeeecCCCCCccceeeeeeeeEeecc-cccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHST-IVS---TRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITL  313 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~-~~g---t~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~p  313 (351)
                                   ....+||+|||+++........ ..|   ...|+|||.+....|+.++||||||++|||+.| |+.|
T Consensus       338 -------------~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kSDVWSFGVlL~E~fT~G~~p  404 (468)
T KOG0197|consen  338 -------------EDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKSDVWSFGVLLWELFTYGRVP  404 (468)
T ss_pred             -------------cCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCcccccceeehhhhHHHHhccCCCC
Confidence                         2457999999999854333322 112   347899999999999999999999999999997 9999


Q ss_pred             ccccCCCceee
Q psy2006         314 MARKTKTKYFY  324 (351)
Q Consensus       314 f~~~~~~~~~~  324 (351)
                      +.+.+..+++.
T Consensus       405 y~~msn~ev~~  415 (468)
T KOG0197|consen  405 YPGMSNEEVLE  415 (468)
T ss_pred             CCCCCHHHHHH
Confidence            99999888763

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=5.3e-34  Score=270.84  Aligned_cols=195  Identities=19%  Similarity=0.251  Sum_probs=164.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|.+..+++.||+|++.+..    ...+.+..|+.+++.+.|++      |++++++|..+.++|+||
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~------iv~~~~~~~~~~~~~lv~  122 (370)
T cd05596          49 KVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEW------IVQLHYAFQDDKYLYMVM  122 (370)
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCC------cceEEEEEecCCEEEEEE
Confidence            57999999999999999999999999997532    22344678999999999888      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++...   .+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+.
T Consensus       123 Ey~~gg~L~~~l~~~---~l~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDLkp~NILl~  176 (370)
T cd05596         123 EYMPGGDLVNLMSNY---DIPEKWARFYTAEVVLA-----------------------LDAIHSMGFIHRDVKPDNMLLD  176 (370)
T ss_pred             cCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCCHHHEEEc
Confidence            999 89999998764   47788888888888877                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (370)
T cd05596         177 --------------------------------------------------------------------------------  176 (370)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecC----CCCCccceeeeeeeeEeec
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILEL----GWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~----~~~~~~DiwslG~~l~~l~  308 (351)
                                     ..+.+||+|||++.....    ......||+.|+|||.+.+.    .++.++|+|||||++|+|+
T Consensus       177 ---------------~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~DiwSlGvilyell  241 (370)
T cd05596         177 ---------------KSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML  241 (370)
T ss_pred             ---------------CCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCCCCCCCceeeeehhHHHHHHH
Confidence                           235699999999865322    12346799999999998753    3688999999999999999


Q ss_pred             cccccccccCCCcee
Q psy2006         309 LGITLMARKTKTKYF  323 (351)
Q Consensus       309 tG~~pf~~~~~~~~~  323 (351)
                      +|..||.+.+..+.+
T Consensus       242 tG~~Pf~~~~~~~~~  256 (370)
T cd05596         242 VGDTPFYADSLVGTY  256 (370)
T ss_pred             hCCCCcCCCCHHHHH
Confidence            999999987765443

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=100.00  E-value=6.8e-34  Score=270.19  Aligned_cols=195  Identities=19%  Similarity=0.266  Sum_probs=164.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||.||+|++..+++.||+|++.+..    .....+.+|+.+++.++|++      |+++++.|..++++|+||
T Consensus        49 ~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~------iv~~~~~~~~~~~~~lv~  122 (371)
T cd05622          49 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW------VVQLFYAFQDDRYLYMVM  122 (371)
T ss_pred             EEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCC------CCeEEEEEEcCCEEEEEE
Confidence            57999999999999999999999999997532    22345678999999998888      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++...   .+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+.
T Consensus       123 Ey~~gg~L~~~~~~~---~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDLkp~NIll~  176 (371)
T cd05622         123 EYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLA-----------------------LDAIHSMGFIHRDVKPDNMLLD  176 (371)
T ss_pred             cCCCCCcHHHHHHhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEeCCCCHHHEEEC
Confidence            999 89999998764   36787888888888877                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (371)
T cd05622         177 --------------------------------------------------------------------------------  176 (371)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCC----CCCccceeeeeeeeEeec
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELG----WAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~----~~~~~DiwslG~~l~~l~  308 (351)
                                     ..+.+||+|||++.....    ......||+.|+|||++.+..    ++.++|+||+||++|+|+
T Consensus       177 ---------------~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~DiwSlGvilyell  241 (371)
T cd05622         177 ---------------KSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML  241 (371)
T ss_pred             ---------------CCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCccCCCccceeehhHHHHHHH
Confidence                           235689999999865322    123567999999999987543    688999999999999999


Q ss_pred             cccccccccCCCcee
Q psy2006         309 LGITLMARKTKTKYF  323 (351)
Q Consensus       309 tG~~pf~~~~~~~~~  323 (351)
                      +|..||.+.+....+
T Consensus       242 ~G~~Pf~~~~~~~~~  256 (371)
T cd05622         242 VGDTPFYADSLVGTY  256 (371)
T ss_pred             hCCCCCCCCCHHHHH
Confidence            999999887654443

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.8e-33  Score=260.44  Aligned_cols=197  Identities=22%  Similarity=0.326  Sum_probs=166.3

Q ss_pred             CccccCcccceEEEEEEe---ecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           1 MCSLNCVASNHVCTNVVY---EVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++.||+|+||.||++.+.   .+++.||+|++....   ........|+++|++++|+|      |++++++|..++++|
T Consensus         1 l~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~   74 (318)
T cd05582           1 LKVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPF------IVKLHYAFQTEGKLY   74 (318)
T ss_pred             CceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCC------cccEEEEEEcCCEEE
Confidence            578999999999999864   478999999997542   23345678999999999887      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++....  .+++..++.++.|++.|                       |.|||+.+++|||+|+.|+
T Consensus        75 lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dlkp~Ni  129 (318)
T cd05582          75 LILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALA-----------------------LDHLHSLGIIYRDLKPENI  129 (318)
T ss_pred             EEEcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEecCCCCHHHe
Confidence            999999 899999987654  57888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       130 l~~-----------------------------------------------------------------------------  132 (318)
T cd05582         130 LLD-----------------------------------------------------------------------------  132 (318)
T ss_pred             EEC-----------------------------------------------------------------------------
Confidence            876                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                        ..+.++|+|||++.....   ......|++.|+|||.+.+..++.++|+|||||++|+|++|
T Consensus       133 ------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg  194 (318)
T cd05582         133 ------------------EEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG  194 (318)
T ss_pred             ------------------CCCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCCCccceeccceEeeeeccC
Confidence                              234689999998865322   22346789999999999888889999999999999999999


Q ss_pred             cccccccCCCcee
Q psy2006         311 ITLMARKTKTKYF  323 (351)
Q Consensus       311 ~~pf~~~~~~~~~  323 (351)
                      ..||.+.+..+.+
T Consensus       195 ~~p~~~~~~~~~~  207 (318)
T cd05582         195 SLPFQGKDRKETM  207 (318)
T ss_pred             CCCCCCCCHHHHH
Confidence            9999877654443

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=1.2e-33  Score=263.18  Aligned_cols=196  Identities=18%  Similarity=0.257  Sum_probs=164.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||.||+|.+..+++.||+|++....    ...+....|..++..+ .|++      |++++++|...+++|+|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~------i~~~~~~~~~~~~~~lv   74 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPF------LTALHCCFQTKDRLFFV   74 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCC------ccceeeEEEcCCeEEEE
Confidence            57999999999999998899999999997532    2234556788888876 4555      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+.+....  .+++..++.++.|++.|                       |.|||++|++|||+|+.|+.+
T Consensus        75 ~E~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDikp~Nill  129 (321)
T cd05591          75 MEYVNGGDLMFQIQRSR--KFDEPRSRFYAAEVTLA-----------------------LMFLHRHGVIYRDLKLDNILL  129 (321)
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCCHHHeEE
Confidence            9999 899999987664  57777888888888777                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (321)
T cd05591         130 D-------------------------------------------------------------------------------  130 (321)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.++|+|||++...   ........||+.|+|||++.+..++.++|+||+||++|+|++|..
T Consensus       131 ----------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~tg~~  194 (321)
T cd05591         131 ----------------AEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGPSVDWWALGVLMYEMMAGQP  194 (321)
T ss_pred             ----------------CCCCEEEeecccceecccCCccccccccCccccCHHHHcCCCCCCccceechhHHHHHHhcCCC
Confidence                            2356899999988642   222344678999999999988899999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       195 Pf~~~~~~~~~  205 (321)
T cd05591         195 PFEADNEDDLF  205 (321)
T ss_pred             CCCCCCHHHHH
Confidence            99987765554

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=8.8e-34  Score=263.70  Aligned_cols=196  Identities=19%  Similarity=0.302  Sum_probs=163.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+++.||+|+++...    ...+....|..++..+ .|++      |++++++|...+++|+|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~------i~~~~~~~~~~~~~~lv   74 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPF------LTHLFCTFQTKEHLFFV   74 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCC------ccceeeEEEcCCEEEEE
Confidence            57999999999999999999999999997542    2233445677777654 4555      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..++.++.|++.|                       |.|||+++++|||+|+.|+.+
T Consensus        75 ~e~~~gg~L~~~~~~~~--~~~~~~~~~~~~qi~~a-----------------------l~~LH~~~ivH~dlkp~Nill  129 (316)
T cd05592          75 MEYLNGGDLMFHIQSSG--RFDEARARFYAAEIICG-----------------------LQFLHKKGIIYRDLKLDNVLL  129 (316)
T ss_pred             EcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEeCCCCHHHeEE
Confidence            9999 899999987754  57888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (316)
T cd05592         130 D-------------------------------------------------------------------------------  130 (316)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   .......+||+.|+|||.+.+..++.++|+||+||++|+|++|..
T Consensus       131 ----------------~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~G~~  194 (316)
T cd05592         131 ----------------KDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSFGVLLYEMLIGQS  194 (316)
T ss_pred             ----------------CCCCEEEccCcCCeECCCCCCccccccCCccccCHHHHcCCCCCCcccchhHHHHHHHHHhCCC
Confidence                            2356899999998642   222345678999999999998889999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       195 Pf~~~~~~~~~  205 (316)
T cd05592         195 PFHGEDEDELF  205 (316)
T ss_pred             CCCCCCHHHHH
Confidence            99887655443

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=5e-34  Score=265.37  Aligned_cols=196  Identities=19%  Similarity=0.302  Sum_probs=164.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||.||+|.++.+++.||+|+++...    ...+....|..++..+ .|++      |++++++|...+++|+|
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~------i~~~~~~~~~~~~~~lv   74 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPF------LTHLYCTFQTKEHLFFV   74 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCC------ccCeeEEEEeCCEEEEE
Confidence            57999999999999999999999999997642    2234556788888764 5555      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+
T Consensus        75 ~E~~~~g~L~~~i~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivHrDlkp~Nil~  129 (316)
T cd05620          75 MEFLNGGDLMFHIQDKG--RFDLYRATFYAAEIVCG-----------------------LQFLHSKGIIYRDLKLDNVML  129 (316)
T ss_pred             ECCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEecCCCHHHeEE
Confidence            9999 899999987754  57788888888888887                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (316)
T cd05620         130 D-------------------------------------------------------------------------------  130 (316)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.++|+|||++...   ........||+.|+|||++.+..++.++|+||+||++|+|++|..
T Consensus       131 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~  194 (316)
T cd05620         131 ----------------RDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVLLYEMLIGQS  194 (316)
T ss_pred             ----------------CCCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCCCCCcccchhhhHHHHHHHHhCCC
Confidence                            2356899999987642   223345678999999999999999999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       195 Pf~~~~~~~~~  205 (316)
T cd05620         195 PFHGDDEDELF  205 (316)
T ss_pred             CCCCCCHHHHH
Confidence            99887665544

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0662|consensus

Probab=100.00  E-value=3.7e-34  Score=233.56  Aligned_cols=198  Identities=22%  Similarity=0.318  Sum_probs=173.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhh---hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK---YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~---~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +|+||+|.||+||+|+++.+.+.||+|.+..+.+   ...++.+|+-+|+.|+|.|      ||+++|....+..+.+|+
T Consensus         7 mekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhkn------ivrl~dvlhsdkkltlvf   80 (292)
T KOG0662|consen    7 MEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN------IVRLHDVLHSDKKLTLVF   80 (292)
T ss_pred             HHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcc------eeehhhhhccCceeEEeH
Confidence            5899999999999999999999999999986532   3457899999999999988      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |||..+|..+....+ ..+....+++++.|++.|                       |.+||++++.|||+||.|+.+. 
T Consensus        81 e~cdqdlkkyfdsln-g~~d~~~~rsfmlqllrg-----------------------l~fchshnvlhrdlkpqnllin-  135 (292)
T KOG0662|consen   81 EFCDQDLKKYFDSLN-GDLDPEIVRSFMLQLLRG-----------------------LGFCHSHNVLHRDLKPQNLLIN-  135 (292)
T ss_pred             HHhhHHHHHHHHhcC-CcCCHHHHHHHHHHHHhh-----------------------hhhhhhhhhhhccCCcceEEec-
Confidence            999999999998876 467888888888888888                       9999999999999999998776 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (292)
T KOG0662|consen  136 --------------------------------------------------------------------------------  135 (292)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecccccc---ccccceeeCceeeecCC-CCCccceeeeeeeeEeec-cccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHST---IVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFELY-LGIT  312 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~---~~gt~~y~aPE~~~~~~-~~~~~DiwslG~~l~~l~-tG~~  312 (351)
                                    ..+.+|++|||+++-.+-+..+   -+-|.+|++|.++++.. |+...|+||.||++.|+. .|++
T Consensus       136 --------------~ngelkladfglarafgipvrcysaevvtlwyrppdvlfgakly~tsidmwsagcifaelanagrp  201 (292)
T KOG0662|consen  136 --------------RNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRP  201 (292)
T ss_pred             --------------cCCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhccchHhhhcchHHHHHhhcCCC
Confidence                          3567999999998765544432   34578999999999876 599999999999999999 6999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      +|.+.+-.+.+
T Consensus       202 lfpg~dvddql  212 (292)
T KOG0662|consen  202 LFPGNDVDDQL  212 (292)
T ss_pred             CCCCCcHHHHH
Confidence            99999877754

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=2.6e-33  Score=261.53  Aligned_cols=196  Identities=18%  Similarity=0.266  Sum_probs=163.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHH-HHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEIN-ALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~-~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||.|+||+||+|.+..+++.||+|++.+..    ........|.. +++.++|+|      |++++++|...+++|+|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~------iv~~~~~~~~~~~~~lv   74 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPF------LVGLHYSFQTTEKLYFV   74 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCC------CccEEEEEecCCEEEEE
Confidence            57999999999999999999999999997532    22234455554 466788777      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|..++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+
T Consensus        75 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------l~~lH~~givH~Dlkp~NIll  129 (325)
T cd05604          75 LDFVNGGELFFHLQRER--SFPEPRARFYAAEIASA-----------------------LGYLHSINIVYRDLKPENILL  129 (325)
T ss_pred             EcCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecCCCHHHeEE
Confidence            9999 899999887654  57888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (325)
T cd05604         130 D-------------------------------------------------------------------------------  130 (325)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.++|+|||++...   ........||+.|+|||.+.+..++.++|+||+||++|+|++|..
T Consensus       131 ----------------~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~  194 (325)
T cd05604         131 ----------------SQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDNTVDWWCLGAVLYEMLYGLP  194 (325)
T ss_pred             ----------------CCCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCCCcCccccccceehhhhcCCC
Confidence                            2356899999988642   222345678999999999999899999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||...+..+.+
T Consensus       195 pf~~~~~~~~~  205 (325)
T cd05604         195 PFYCRDVAEMY  205 (325)
T ss_pred             CCCCCCHHHHH
Confidence            99887655543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=1.7e-33  Score=265.09  Aligned_cols=219  Identities=20%  Similarity=0.266  Sum_probs=161.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|.+..+++.||+|++....    .....+..|+.++..+.|++      |++++++|...+++|+||
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           7 KVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPW------IVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             EEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCC------ccchhhheecCCeEEEEE
Confidence            67999999999999999899999999997542    23456778999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe---
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI---  153 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni---  153 (351)
                      ||+ +++|.+++....  .+++..++.++.|++.|                       |+|||+.|++|||+|+.||   
T Consensus        81 e~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~a-----------------------L~~LH~~giiH~Dlkp~NIll~  135 (350)
T cd05573          81 EYMPGGDLMNLLIRKD--VFPEETARFYIAELVLA-----------------------LDSVHKLGFIHRDIKPDNILID  135 (350)
T ss_pred             cCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCCHHHeEEC
Confidence            999 899999998763  67888888888888888                       9999999999999998876   


Q ss_pred             -----EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         154 -----RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       154 -----~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                           +|+|||++...........-..  .   ..    .                                  ..    
T Consensus       136 ~~~~~kL~Dfg~~~~~~~~~~~~~~~~--~---~~----~----------------------------------~~----  168 (350)
T cd05573         136 ADGHIKLADFGLCKKMNKAKDREYYLN--D---SH----N----------------------------------LL----  168 (350)
T ss_pred             CCCCEEeecCCCCccCcccCccccccc--c---cc----c----------------------------------cc----
Confidence                 5666666643222110000000  0   00    0                                  00    


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                             .........- .............||+.|+|||.+.+..++.++|+|||||++|+|+
T Consensus       169 -----------------------~~~~~~~~~~-~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell  224 (350)
T cd05573         169 -----------------------FRDNVLVRRR-DHKQRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEML  224 (350)
T ss_pred             -----------------------cccccccccc-ccccccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhc
Confidence                                   0000000000 0000011223467899999999999999999999999999999999


Q ss_pred             cccccccccCCCce
Q psy2006         309 LGITLMARKTKTKY  322 (351)
Q Consensus       309 tG~~pf~~~~~~~~  322 (351)
                      +|..||...+..+.
T Consensus       225 ~g~~Pf~~~~~~~~  238 (350)
T cd05573         225 YGFPPFYSDTLQET  238 (350)
T ss_pred             cCCCCCCCCCHHHH
Confidence            99999988765443

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>KOG4717|consensus

Probab=100.00  E-value=3.2e-34  Score=265.86  Aligned_cols=220  Identities=19%  Similarity=0.292  Sum_probs=188.3

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      -||+|.|+.|-+|++--+|+.||||++.+..   -....+..|++.|+.++|+|      ||+||++...+..+|||+|.
T Consensus        25 TlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpN------iVRLYEViDTQTKlyLiLEL   98 (864)
T KOG4717|consen   25 TLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPN------IVRLYEVIDTQTKLYLILEL   98 (864)
T ss_pred             hhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcC------eeeeeehhcccceEEEEEEe
Confidence            4999999999999999999999999998643   34567789999999999888      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      = +|+|+|||.... .++.|+.+++++.||+.|                       +.|||.-.++|||+||.|+..-. 
T Consensus        99 GD~GDl~DyImKHe-~Gl~E~La~kYF~QI~~A-----------------------I~YCHqLHVVHRDLKPENVVFFE-  153 (864)
T KOG4717|consen   99 GDGGDLFDYIMKHE-EGLNEDLAKKYFAQIVHA-----------------------ISYCHQLHVVHRDLKPENVVFFE-  153 (864)
T ss_pred             cCCchHHHHHHhhh-ccccHHHHHHHHHHHHHH-----------------------HHHHhhhhhhcccCCcceeEEee-
Confidence            9 899999998875 368888888888888888                       99999999999999999986541 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (864)
T KOG4717|consen  154 --------------------------------------------------------------------------------  153 (864)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcce--eccccccccccceeeCceeeecCCC-CCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   .-+-|||+|||++..  ++....+.||+..|-|||++++..| .+++||||||+++|-|++|++||.
T Consensus       154 -------------KlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFq  220 (864)
T KOG4717|consen  154 -------------KLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQ  220 (864)
T ss_pred             -------------ecCceEeeeccccccCCCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccc
Confidence                         235699999999753  5677889999999999999999998 677899999999999999999999


Q ss_pred             ccCCCceeeecccCCcccccccccccccCccCCC
Q psy2006         316 RKTKTKYFYHGKLDWDEKGTAGRYVRENCKPLHH  349 (351)
Q Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (351)
                      ..++.|.+.-   .-+++-....-|+.+|++|-+
T Consensus       221 eANDSETLTm---ImDCKYtvPshvS~eCrdLI~  251 (864)
T KOG4717|consen  221 EANDSETLTM---IMDCKYTVPSHVSKECRDLIQ  251 (864)
T ss_pred             cccchhhhhh---hhcccccCchhhhHHHHHHHH
Confidence            9999988641   133333444468888888743

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=2.1e-33  Score=261.88  Aligned_cols=195  Identities=20%  Similarity=0.324  Sum_probs=163.9

Q ss_pred             CccccCcccceEEEEEEe---ecCcEEEEEEecchh-----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCe
Q psy2006           1 MCSLNCVASNHVCTNVVY---EVDSVVALKIIKNVE-----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH   72 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~~-----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~   72 (351)
                      +++||+|+||.||++.+.   .+++.||+|++....     ........|+.+|+.+.|+|      |+++++.|..+++
T Consensus         1 ~~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~------iv~~~~~~~~~~~   74 (323)
T cd05584           1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPF------IVDLIYAFQTGGK   74 (323)
T ss_pred             CceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCc------hhceeeEEecCCe
Confidence            578999999999999864   478999999997532     22345678999999999887      9999999999999


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +|+||||+ +++|.+++....  .+++..++.++.|++.|                       |+|||+.|++|||+|+.
T Consensus        75 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~dlkp~  129 (323)
T cd05584          75 LYLILEYLSGGELFMHLEREG--IFMEDTACFYLSEISLA-----------------------LEHLHQQGIIYRDLKPE  129 (323)
T ss_pred             EEEEEeCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHH
Confidence            99999999 889999998764  46777777777777777                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.                                                                           
T Consensus       130 Nil~~---------------------------------------------------------------------------  134 (323)
T cd05584         130 NILLD---------------------------------------------------------------------------  134 (323)
T ss_pred             HeEEC---------------------------------------------------------------------------
Confidence            99876                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                          ..+.+||+|||++...   ........||+.|+|||.+.+..++.++|+|||||++|+|+
T Consensus       135 --------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell  194 (323)
T cd05584         135 --------------------AQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHGKAVDWWSLGALMYDML  194 (323)
T ss_pred             --------------------CCCCEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCCCcceecccHHHHHHHh
Confidence                                2356899999987642   12223457899999999998888899999999999999999


Q ss_pred             cccccccccCCCc
Q psy2006         309 LGITLMARKTKTK  321 (351)
Q Consensus       309 tG~~pf~~~~~~~  321 (351)
                      +|..||.+.+..+
T Consensus       195 ~G~~pf~~~~~~~  207 (323)
T cd05584         195 TGAPPFTAENRKK  207 (323)
T ss_pred             cCCCCCCCCCHHH
Confidence            9999998776544

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=2.4e-33  Score=262.28  Aligned_cols=189  Identities=17%  Similarity=0.268  Sum_probs=162.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+++.||+|++++..    ...+.+..|..+++.+ .|++      |++++++|...+++|+|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~------Iv~~~~~~~~~~~~~lv   74 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPF------LVGLHSCFQTESRLFFV   74 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCC------CCceEEEEEcCCEEEEE
Confidence            57999999999999999999999999997532    2234567899999988 4666      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++...+  .+++..++.++.|++.|                       |.|||++|++|||+|+.|+.+
T Consensus        75 ~e~~~~g~L~~~~~~~~--~l~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~dlkp~Nili  129 (329)
T cd05588          75 IEFVSGGDLMFHMQRQR--KLPEEHARFYSAEISLA-----------------------LNFLHERGIIYRDLKLDNVLL  129 (329)
T ss_pred             EeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEecCCCHHHeEE
Confidence            9999 899999887654  67888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (329)
T cd05588         130 D-------------------------------------------------------------------------------  130 (329)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ....+||+|||++...   ........||+.|+|||++.+..++.++|+||+||++|++++|..
T Consensus       131 ----------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~el~~g~~  194 (329)
T cd05588         131 ----------------AEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS  194 (329)
T ss_pred             ----------------CCCCEEECcCccccccccCCCccccccCCccccCHHHHcCCCCCCccceechHHHHHHHHHCCC
Confidence                            2356899999988642   223345678999999999999899999999999999999999999


Q ss_pred             cccc
Q psy2006         313 LMAR  316 (351)
Q Consensus       313 pf~~  316 (351)
                      ||+.
T Consensus       195 Pf~~  198 (329)
T cd05588         195 PFDI  198 (329)
T ss_pred             Cccc
Confidence            9974

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=1.1e-33  Score=263.42  Aligned_cols=196  Identities=18%  Similarity=0.268  Sum_probs=164.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.++.+++.||+|++.+..    ...+....|..++..+ .|++      |++++++|...+++|+|
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~------iv~~~~~~~~~~~~~iv   74 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPF------LTQLYCCFQTPDRLFFV   74 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCc------hhceeeEEEcCCEEEEE
Confidence            57999999999999999999999999997532    2234556788888876 3555      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..+..++.|++.|                       |+|||+++++|||+|+.|+.+
T Consensus        75 ~Ey~~~g~L~~~i~~~~--~l~~~~~~~~~~ql~~~-----------------------L~~lH~~~ivH~dlkp~NIli  129 (320)
T cd05590          75 MEFVNGGDLMFHIQKSR--RFDEARARFYAAEITSA-----------------------LMFLHDKGIIYRDLKLDNVLL  129 (320)
T ss_pred             EcCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeCCCCHHHeEE
Confidence            9999 899999987764  57788888888888887                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (320)
T cd05590         130 D-------------------------------------------------------------------------------  130 (320)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ....++|+|||++...   ........||+.|+|||.+.+..++.++|+||+||++|+|++|..
T Consensus       131 ----------------~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~  194 (320)
T cd05590         131 ----------------HEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHA  194 (320)
T ss_pred             ----------------CCCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCC
Confidence                            2356899999987642   223345678999999999988889999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+++
T Consensus       195 Pf~~~~~~~~~  205 (320)
T cd05590         195 PFEAENEDDLF  205 (320)
T ss_pred             CCCCCCHHHHH
Confidence            99887765543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=100.00  E-value=3.5e-33  Score=261.36  Aligned_cols=196  Identities=20%  Similarity=0.253  Sum_probs=164.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||++++..+++.||+|++.+..    .....+..|+.+++.+.|++      |+++++.|...++.|+||
T Consensus         7 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           7 KVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQW------ITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCC------EeeEEEEEEcCCEEEEEE
Confidence            67999999999999999999999999997532    22344677899999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ |++|.+++.... ..+++..++.++.|++.+                       |+|||+++++|||+|+.|+.+.
T Consensus        81 Ey~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~~-----------------------L~~lH~~~iiHrDlkp~Nill~  136 (331)
T cd05624          81 DYYVGGDLLTLLSKFE-DRLPEDMARFYIAEMVLA-----------------------IHSIHQLHYVHRDIKPDNVLLD  136 (331)
T ss_pred             eCCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeccCchHHEEEc
Confidence            999 999999998753 357888888888888888                       9999999999999999999876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (331)
T cd05624         137 --------------------------------------------------------------------------------  136 (331)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeec-----CCCCCccceeeeeeeeEee
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILE-----LGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwslG~~l~~l  307 (351)
                                     ..+.+||+|||++......    .....||+.|+|||.+.+     ..++.++|+||+||++|+|
T Consensus       137 ---------------~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwSlGvil~el  201 (331)
T cd05624         137 ---------------MNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMEDGMGKYGPECDWWSLGVCMYEM  201 (331)
T ss_pred             ---------------CCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhccccCCCCCCCcccEEeeehhhhhh
Confidence                           2346899999998653221    123578999999998875     4578899999999999999


Q ss_pred             ccccccccccCCCce
Q psy2006         308 YLGITLMARKTKTKY  322 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~  322 (351)
                      ++|..||...+..+.
T Consensus       202 l~g~~Pf~~~~~~~~  216 (331)
T cd05624         202 LYGETPFYAESLVET  216 (331)
T ss_pred             hhCCCCccCCCHHHH
Confidence            999999987665443

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=1.3e-33  Score=260.83  Aligned_cols=193  Identities=21%  Similarity=0.332  Sum_probs=163.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||+|+||+||+|.+..+++.||+|++....  .....+.+|+.+++.+.|+|      |+++++++....+.|+|||
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~lv~e   83 (303)
T cd07869          10 LEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHAN------IVLLHDIIHTKETLTLVFE   83 (303)
T ss_pred             eeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCC------cCeEEEEEecCCeEEEEEE
Confidence            368999999999999998899999999997532  22345678999999999887      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |++++|.+++.... ..+++..++.++.|++.|                       |+|||++|++|||+|++|+.+.+ 
T Consensus        84 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~ivH~dlkp~Nill~~-  138 (303)
T cd07869          84 YVHTDLCQYMDKHP-GGLHPENVKLFLFQLLRG-----------------------LSYIHQRYILHRDLKPQNLLISD-  138 (303)
T ss_pred             CCCcCHHHHHHhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEEECC-
Confidence            99999999987653 357778888888888887                       99999999999999999998862 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (303)
T cd07869         139 --------------------------------------------------------------------------------  138 (303)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    .+.+||+|||++....   .......+|+.|+|||++.+. .++.++|+||+||++|+|++|..||
T Consensus       139 --------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf  204 (303)
T cd07869         139 --------------TGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVGCIFVEMIQGVAAF  204 (303)
T ss_pred             --------------CCCEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence                          3468999999886432   223346788999999998764 5788999999999999999999999


Q ss_pred             cccC
Q psy2006         315 ARKT  318 (351)
Q Consensus       315 ~~~~  318 (351)
                      .+..
T Consensus       205 ~~~~  208 (303)
T cd07869         205 PGMK  208 (303)
T ss_pred             CCCc
Confidence            8754

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>KOG0604|consensus

Probab=100.00  E-value=1.9e-34  Score=251.83  Aligned_cols=220  Identities=21%  Similarity=0.296  Sum_probs=187.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC----CeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH----GHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~----~~~~lV~   77 (351)
                      +.||-|-.|.|-.+.++.+++.+|+|++..    ...+.+|+.+.-..+     ||.|||+++|+|+..    ..+.+||
T Consensus        68 qvLG~GinGkV~~C~~k~T~ekfALKvL~D----s~KARrEVeLHw~~s-----~h~~iV~IidVyeNs~~~rkcLLiVm  138 (400)
T KOG0604|consen   68 QVLGAGINGKVVQCVHKRTQEKFALKVLLD----SPKARREVELHWMAS-----GHPHIVSIIDVYENSYQGRKCLLIVM  138 (400)
T ss_pred             hhhccccCCceEEEEeccchhhhHHHHHhc----CHHHHhHhhhhhhhc-----CCCceEEeehhhhhhccCceeeEeee
Confidence            469999999999999999999999999975    345667777654432     333499999999754    3899999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      |.+ ||.|++.++..+...+.|..|-.|++||..|                       +.|||+.+|.|||+|+.|+.-.
T Consensus       139 E~meGGeLfsriq~~g~~afTErea~eI~~qI~~A-----------------------v~~lH~~nIAHRDlKpENLLyt  195 (400)
T KOG0604|consen  139 ECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLA-----------------------VRYLHSMNIAHRDLKPENLLYT  195 (400)
T ss_pred             ecccchHHHHHHHHcccccchHHHHHHHHHHHHHH-----------------------HHHHHhcchhhccCChhheeee
Confidence            999 9999999999998889999999999999998                       9999999999999999998766


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +-+                                                                             
T Consensus       196 ~t~-----------------------------------------------------------------------------  198 (400)
T KOG0604|consen  196 TTS-----------------------------------------------------------------------------  198 (400)
T ss_pred             cCC-----------------------------------------------------------------------------
Confidence            211                                                                             


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                     ....+||+|||+++...  ....+.+.||.|.|||++-...|....|+||+|+++|-|++|-+||
T Consensus       199 ---------------~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPF  263 (400)
T KOG0604|consen  199 ---------------PNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF  263 (400)
T ss_pred             ---------------CCcceEecccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcc
Confidence                           24578999999998644  5667888999999999998888999999999999999999999999


Q ss_pred             cccCCCcee-------eecccCCcccccccccccccCccC
Q psy2006         315 ARKTKTKYF-------YHGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       315 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      ++....-+.       ..|.+.|+..+|.  .||++||||
T Consensus       264 YS~hg~aispgMk~rI~~gqy~FP~pEWs--~VSe~aKdl  301 (400)
T KOG0604|consen  264 YSNHGLAISPGMKRRIRTGQYEFPEPEWS--CVSEAAKDL  301 (400)
T ss_pred             cccCCccCChhHHhHhhccCccCCChhHh--HHHHHHHHH
Confidence            998765443       3588888888887  999999986

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=1.1e-33  Score=259.57  Aligned_cols=197  Identities=23%  Similarity=0.370  Sum_probs=165.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||.|+||+||+|.+..+++.||+|+++...  .....+.+|+++++.++|+|      |+++++++...+..++|||
T Consensus        10 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~lv~e   83 (288)
T cd07871          10 LDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHAN------IVTLHDIIHTERCLTLVFE   83 (288)
T ss_pred             eeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCC------EeeEEEEEcCCCeEEEEEe
Confidence            367999999999999999999999999997532  23346678999999999887      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |++++|.+++.... ..+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+.  
T Consensus        84 ~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivH~dlkp~Nil~~--  137 (288)
T cd07871          84 YLDSDLKQYLDNCG-NLMSMHNVKIFMFQLLRG-----------------------LSYCHKRKILHRDLKPQNLLIN--  137 (288)
T ss_pred             CCCcCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCHHHEEEC--
Confidence            99889999987654 346777888888888887                       9999999999999999999886  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (288)
T cd07871         138 --------------------------------------------------------------------------------  137 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                   ..+.+||+|||++.....   ......+++.|+|||.+.+ ..++.++|+||+||++|+|+||.+||
T Consensus       138 -------------~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~~pf  204 (288)
T cd07871         138 -------------EKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVGCILYEMATGRPMF  204 (288)
T ss_pred             -------------CCCCEEECcCcceeeccCCCccccCceecccccChHHhcCCcccCcHHHHHHHHHHHHHHHhCCCCC
Confidence                         235689999999865322   2234567899999999876 46789999999999999999999999


Q ss_pred             cccCCCce
Q psy2006         315 ARKTKTKY  322 (351)
Q Consensus       315 ~~~~~~~~  322 (351)
                      .+.+..+.
T Consensus       205 ~~~~~~~~  212 (288)
T cd07871         205 PGSTVKEE  212 (288)
T ss_pred             CCCCHHHH
Confidence            88765443

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=1.6e-33  Score=262.87  Aligned_cols=198  Identities=17%  Similarity=0.272  Sum_probs=165.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||.|+||.||+|.+..+++.||+|++.+..    ...+.+..|+.++..+.|.+     +|+.++++|...+++|+|
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-----~i~~~~~~~~~~~~~~lv   79 (324)
T cd05587           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPP-----FLTQLHSCFQTMDRLYFV   79 (324)
T ss_pred             EEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCC-----ceeeeEEEEEcCCEEEEE
Confidence            367999999999999998899999999997532    23355678999999887543     288999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..+..++.|++.|                       |+|||++|++|||+|+.|+.+
T Consensus        80 ~E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~ivH~dlkp~Nill  134 (324)
T cd05587          80 MEYVNGGDLMYHIQQVG--KFKEPHAVFYAAEIAIG-----------------------LFFLHSKGIIYRDLKLDNVML  134 (324)
T ss_pred             EcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEecCCCHHHeEE
Confidence            9999 899999987754  57777888888888777                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       135 ~-------------------------------------------------------------------------------  135 (324)
T cd05587         135 D-------------------------------------------------------------------------------  135 (324)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.++|+|||++...   ........||+.|+|||++.+..++.++|+||+||++|+|+||..
T Consensus       136 ----------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~  199 (324)
T cd05587         136 ----------------AEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQP  199 (324)
T ss_pred             ----------------CCCCEEEeecCcceecCCCCCceeeecCCccccChhhhcCCCCCcccchhhhHHHHHHHHhCCC
Confidence                            2356899999987642   222334678999999999999999999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       200 pf~~~~~~~~~  210 (324)
T cd05587         200 PFDGEDEDELF  210 (324)
T ss_pred             CCCCCCHHHHH
Confidence            99877655443

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0574|consensus

Probab=100.00  E-value=7.3e-35  Score=254.62  Aligned_cols=197  Identities=22%  Similarity=0.287  Sum_probs=170.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +++||+|+||+||+|+++++|..+|||.+..+ .+-+++..|+.||++..+++      ||++|+.|--+..+|||||||
T Consensus        38 ~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV~-sDLQEIIKEISIMQQC~S~y------VVKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   38 VGKLGEGSYGSVHKAIHRESGHVLAIKKVPVD-TDLQEIIKEISIMQQCKSKY------VVKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             HHHhcCCcchHHHHHHHhccCcEEEEEecCcc-chHHHHHHHHHHHHHcCCch------hhhhhhhhccCCceEeehhhc
Confidence            46899999999999999999999999999864 34567889999999998777      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       .||+.|.++..+ .++.++.+..+++..+.|                       |+|||....+|||+|.+||.|.   
T Consensus       111 GAGSiSDI~R~R~-K~L~E~EIs~iL~~TLKG-----------------------L~YLH~~~KIHRDIKAGNILLN---  163 (502)
T KOG0574|consen  111 GAGSISDIMRARR-KPLSEQEISAVLRDTLKG-----------------------LQYLHDLKKIHRDIKAGNILLN---  163 (502)
T ss_pred             CCCcHHHHHHHhc-CCccHHHHHHHHHHHHhH-----------------------HHHHHHHHHHHhhcccccEEEc---
Confidence             799999988764 456666666666666655                       9999999999999999999886   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       164 --------------------------------------------------------------------------------  163 (502)
T KOG0574|consen  164 --------------------------------------------------------------------------------  163 (502)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                  ..+..||+|||.+...+.   ..++.+|||.|||||++..-+|..++||||||++..||+-|++||..
T Consensus       164 ------------T~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~~ADIWSLGITaIEMAEG~PPYsD  231 (502)
T KOG0574|consen  164 ------------TDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDTKADIWSLGITAIEMAEGRPPYSD  231 (502)
T ss_pred             ------------ccchhhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccchhhhHhhhcchhhhhhcCCCCccc
Confidence                        246789999999977543   34678999999999999999999999999999999999999999987


Q ss_pred             cCCCcee
Q psy2006         317 KTKTKYF  323 (351)
Q Consensus       317 ~~~~~~~  323 (351)
                      --.+..+
T Consensus       232 IHPMRAI  238 (502)
T KOG0574|consen  232 IHPMRAI  238 (502)
T ss_pred             cccccee
Confidence            6666554

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=3.3e-33  Score=260.25  Aligned_cols=194  Identities=19%  Similarity=0.267  Sum_probs=161.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHH-HHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEIN-ALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~-~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||.|+||+||+|++..+++.||+|++.+..    .....+..|.. +++.+.|+|      |+++++.|...+..|+|
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~------iv~~~~~~~~~~~~~lv   74 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPF------LVGLHYSFQTAEKLYFV   74 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCC------ccceeeEEEcCCEEEEE
Confidence            57999999999999999999999999997532    22234455554 577888777      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+.+....  .+++..++.++.|++.|                       |.|||+.|++|||+|+.||.+
T Consensus        75 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------L~~lH~~~ivH~Dlkp~NIll  129 (321)
T cd05603          75 LDYVNGGELFFHLQRER--CFLEPRARFYAAEVASA-----------------------IGYLHSLNIIYRDLKPENILL  129 (321)
T ss_pred             EcCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeccCCHHHeEE
Confidence            9999 889998887654  57788888888888887                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (321)
T cd05603         130 D-------------------------------------------------------------------------------  130 (321)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   ........||+.|+|||.+.+..++.++|+|||||++|+|++|..
T Consensus       131 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~  194 (321)
T cd05603         131 ----------------SQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDRTVDWWCLGAVLYEMLYGLP  194 (321)
T ss_pred             ----------------CCCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCCCcCcccccchhhhhhhcCCC
Confidence                            2356899999988642   222334678999999999988889999999999999999999999


Q ss_pred             cccccCCCc
Q psy2006         313 LMARKTKTK  321 (351)
Q Consensus       313 pf~~~~~~~  321 (351)
                      ||.+.+..+
T Consensus       195 pf~~~~~~~  203 (321)
T cd05603         195 PFYSRDVSQ  203 (321)
T ss_pred             CCCCCCHHH
Confidence            998876443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=2.6e-33  Score=261.49  Aligned_cols=195  Identities=18%  Similarity=0.270  Sum_probs=161.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHH-HHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEIN-ALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~-~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|++..+++.||+|++....    ........|.. +++.+.|++      |++++++|...+.+|+|
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~------Iv~~~~~~~~~~~~~lv   74 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPF------LVGLHFSFQTADKLYFV   74 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCC------CCceeEEEEcCCeEEEE
Confidence            57999999999999999999999999997532    11223344444 467787777      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..++.++.|++.|                       |+|||+.|++|||+|+.|+.+
T Consensus        75 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~-----------------------L~~lH~~giiHrDlkp~Nili  129 (325)
T cd05602          75 LDYINGGELFYHLQRER--CFLEPRARFYAAEIASA-----------------------LGYLHSLNIVYRDLKPENILL  129 (325)
T ss_pred             EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEecCCCHHHeEE
Confidence            9999 889999997754  57777888888888887                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (325)
T cd05602         130 D-------------------------------------------------------------------------------  130 (325)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            5                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.++|+|||++...   ........||+.|+|||++.+..++.++|+||+||++|+|++|..
T Consensus       131 ----------------~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~  194 (325)
T cd05602         131 ----------------SQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLP  194 (325)
T ss_pred             ----------------CCCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCCccccccccHHHHHHhcCCC
Confidence                            2346899999988642   222345679999999999999899999999999999999999999


Q ss_pred             cccccCCCce
Q psy2006         313 LMARKTKTKY  322 (351)
Q Consensus       313 pf~~~~~~~~  322 (351)
                      ||.+.+..+.
T Consensus       195 pf~~~~~~~~  204 (325)
T cd05602         195 PFYSRNTAEM  204 (325)
T ss_pred             CCCCCCHHHH
Confidence            9987765543

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=6.6e-33  Score=259.21  Aligned_cols=196  Identities=20%  Similarity=0.236  Sum_probs=165.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh----hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK----YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~----~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|.+..+++.||+|++.....    ..+.+..|+.+++.+.|++      |+++++.|...+++|+||
T Consensus         7 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~------i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           7 SLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPW------IPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             EEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCC------CcceeeEEecCCeEEEEE
Confidence            579999999999999999999999999986432    3455778999999998777      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++.+.. ..+++..++.++.|++.+                       |.|||+.+++|||+|+.|+.+.
T Consensus        81 e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~qi~~a-----------------------L~~lH~~~i~H~Dlkp~NIll~  136 (330)
T cd05601          81 EYQPGGDLLSLLNRYE-DQFDEDMAQFYLAELVLA-----------------------IHSVHQMGYVHRDIKPENVLID  136 (330)
T ss_pred             CCCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEcccCchHheEEC
Confidence            999 999999998763 367888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (330)
T cd05601         137 --------------------------------------------------------------------------------  136 (330)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeee------cCCCCCccceeeeeeeeEe
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVIL------ELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~------~~~~~~~~DiwslG~~l~~  306 (351)
                                     ..+.+||+|||++......    .....||+.|+|||++.      ...++.++|+|||||++|+
T Consensus       137 ---------------~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~e  201 (330)
T cd05601         137 ---------------RTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVECDWWSLGVIAYE  201 (330)
T ss_pred             ---------------CCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccccccCCCCCcceeecccceeee
Confidence                           2356899999998653221    12357899999999987      3456789999999999999


Q ss_pred             eccccccccccCCCce
Q psy2006         307 LYLGITLMARKTKTKY  322 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~  322 (351)
                      |++|..||...+..+.
T Consensus       202 l~~g~~Pf~~~~~~~~  217 (330)
T cd05601         202 MIYGRSPFHEGTSAKT  217 (330)
T ss_pred             eccCCCCCCCCCHHHH
Confidence            9999999987765544

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0586|consensus

Probab=100.00  E-value=3.1e-33  Score=264.99  Aligned_cols=195  Identities=21%  Similarity=0.332  Sum_probs=170.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ..||.|.|++|.+|++..++..||||++++..   .......+|+++|..|.|+|      ||+++.+.+....+|+|||
T Consensus        62 ~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPn------Ivkl~~v~~t~~~lylV~e  135 (596)
T KOG0586|consen   62 KTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPN------IVKLFSVIETEATLYLVME  135 (596)
T ss_pred             eeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcc------eeeeeeeeeecceeEEEEE
Confidence            57999999999999999999999999998753   33345789999999999988      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +|.+++++...+  ++.+..++.++.|+..+                       ++|||+++++|||+|..|+.|. 
T Consensus       136 ya~~ge~~~yl~~~g--r~~e~~ar~~F~q~vsa-----------------------veYcH~k~ivHrdLk~eNilL~-  189 (596)
T KOG0586|consen  136 YASGGELFDYLVKHG--RMKEKEARAKFRQIVSA-----------------------VEYCHSKNIVHRDLKAENILLD-  189 (596)
T ss_pred             eccCchhHHHHHhcc--cchhhhhhhhhHHHHHH-----------------------HHHHhhcceeccccchhhcccc-
Confidence            99 999999999886  45566677777766666                       9999999999999999999876 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (596)
T KOG0586|consen  190 --------------------------------------------------------------------------------  189 (596)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecCCC-CCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ...++||+|||++.+.  .....+.+|++.|.|||++.+..+ ++.+|+||+|+++|.++.|..||
T Consensus       190 --------------~~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gpe~D~Wslgvvly~LV~GsLPF  255 (596)
T KOG0586|consen  190 --------------ENMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDGPEVDIWSLGVVLYALVEGSLPF  255 (596)
T ss_pred             --------------cccceeeeccccceeecccccccccCCCCCccChHhhcCcccCCcceehhhhhhhheeeeeccccc
Confidence                          2346999999999774  445578999999999999999888 88999999999999999999999


Q ss_pred             cccCCCce
Q psy2006         315 ARKTKTKY  322 (351)
Q Consensus       315 ~~~~~~~~  322 (351)
                      ++.+-.+.
T Consensus       256 DG~~lk~L  263 (596)
T KOG0586|consen  256 DGQNLKEL  263 (596)
T ss_pred             CCcccccc
Confidence            99875443

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.5e-33  Score=259.79  Aligned_cols=194  Identities=21%  Similarity=0.313  Sum_probs=159.8

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecchhh----hhHHHHHHHHHHHHh---CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNVEK----YREAARLEINALQKI---GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~----~~~~~~~E~~~l~~l---~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ||+|+||+||+|++..+++.||+|++.+...    .......|..++..+   .|++      |+.+++.|....++|+|
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~------i~~~~~~~~~~~~~~lv   74 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPF------IVGLKFSFQTDSDLYLV   74 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCc------CcceEEEEecCCeEEEE
Confidence            7999999999999999999999999975321    222345577777665   3444      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+
T Consensus        75 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qil~a-----------------------l~~LH~~~ivHrDlkp~Nili  129 (330)
T cd05586          75 TDYMSGGELFWHLQKEG--RFSEDRAKFYIAELVLA-----------------------LEHLHKYDIVYRDLKPENILL  129 (330)
T ss_pred             EcCCCCChHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeccCCHHHeEE
Confidence            9999 899999987754  57888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (330)
T cd05586         130 D-------------------------------------------------------------------------------  130 (330)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                      ..+.++|+|||++...   .......+||+.|+|||.+.+. .++.++|+||+||++|+|++|.
T Consensus       131 ----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DvwslGvil~elltG~  194 (330)
T cd05586         131 ----------------ATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGYTKHVDFWSLGVLVFEMCCGW  194 (330)
T ss_pred             ----------------CCCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCCCCccceeccccEEEEeccCC
Confidence                            2346899999987642   2223456799999999998764 4789999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      .||.+.+..+.+
T Consensus       195 ~Pf~~~~~~~~~  206 (330)
T cd05586         195 SPFYAEDTQQMY  206 (330)
T ss_pred             CCCCCCCHHHHH
Confidence            999887655543

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=4.1e-33  Score=259.91  Aligned_cols=195  Identities=18%  Similarity=0.269  Sum_probs=162.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHH-HHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEIN-ALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~-~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+++.||+|++....    .....+..|.. +++.++|++      |+++++.|...+..|+|
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~------iv~~~~~~~~~~~~~lv   74 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPF------LVGLHYSFQTADKLYFV   74 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCC------CCCeeEEEEeCCEEEEE
Confidence            57999999999999999999999999997532    12233445554 457788777      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+
T Consensus        75 ~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~givH~dikp~NIll  129 (323)
T cd05575          75 LDYVNGGELFFHLQRER--SFPEPRARFYAAEIASA-----------------------LGYLHSLNIIYRDLKPENILL  129 (323)
T ss_pred             EcCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeCCCCHHHeEE
Confidence            9999 899999988754  57788888888888887                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (323)
T cd05575         130 D-------------------------------------------------------------------------------  130 (323)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   ........||+.|+|||.+.+..++.++|+|||||++|+|++|..
T Consensus       131 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~  194 (323)
T cd05575         131 ----------------SQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDRTVDWWCLGAVLYEMLYGLP  194 (323)
T ss_pred             ----------------CCCcEEEeccCCCcccccCCCccccccCChhhcChhhhcCCCCCccccccccchhhhhhhcCCC
Confidence                            2356899999987642   222334678999999999998899999999999999999999999


Q ss_pred             cccccCCCce
Q psy2006         313 LMARKTKTKY  322 (351)
Q Consensus       313 pf~~~~~~~~  322 (351)
                      ||.+.+..+.
T Consensus       195 pf~~~~~~~~  204 (323)
T cd05575         195 PFYSRDTAEM  204 (323)
T ss_pred             CCCCCCHHHH
Confidence            9988765443

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=5e-33  Score=259.86  Aligned_cols=191  Identities=17%  Similarity=0.268  Sum_probs=163.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+++.||+|++.+..    ...+.+..|+.++..+. |++      |+.++++|...+++|+|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------i~~~~~~~~~~~~~~lv   74 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPF------LVGLHSCFQTTSRLFLV   74 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCC------EeeEEEEEEeCCEEEEE
Confidence            57999999999999999999999999998642    23345678999998884 455      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+
T Consensus        75 ~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~qi~~a-----------------------l~~lH~~~ivHrDlkp~Nili  129 (327)
T cd05617          75 IEYVNGGDLMFHMQRQR--KLPEEHARFYAAEICIA-----------------------LNFLHERGIIYRDLKLDNVLL  129 (327)
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCCHHHEEE
Confidence            9999 899999887654  57888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (327)
T cd05617         130 D-------------------------------------------------------------------------------  130 (327)
T ss_pred             e-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   .......+||+.|+|||++.+..++.++|+||+||++|+|++|..
T Consensus       131 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~ell~g~~  194 (327)
T cd05617         131 ----------------ADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRS  194 (327)
T ss_pred             ----------------CCCCEEEeccccceeccCCCCceecccCCcccCCHHHHCCCCCCchheeehhHHHHHHHHhCCC
Confidence                            2356999999988642   223345679999999999999899999999999999999999999


Q ss_pred             cccccC
Q psy2006         313 LMARKT  318 (351)
Q Consensus       313 pf~~~~  318 (351)
                      ||...+
T Consensus       195 pf~~~~  200 (327)
T cd05617         195 PFDIIT  200 (327)
T ss_pred             CCCccC
Confidence            997543

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=2e-33  Score=261.33  Aligned_cols=196  Identities=19%  Similarity=0.292  Sum_probs=164.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+++.||+|++....    ...+....|..+++.+ .|++      |++++++|...+++++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~------iv~~~~~~~~~~~~~lv   74 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPF------LTHLYCTFQTKENLFFV   74 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCc------CcceEEEEEeCCEEEEE
Confidence            57999999999999999999999999997642    2234456788888764 6666      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.|+.+
T Consensus        75 ~ey~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------l~~LH~~~ivHrdikp~Nil~  129 (316)
T cd05619          75 MEYLNGGDLMFHIQSCH--KFDLPRATFYAAEIICG-----------------------LQFLHSKGIVYRDLKLDNILL  129 (316)
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEeCCCCHHHEEE
Confidence            9999 899999998754  57777888888888877                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (316)
T cd05619         130 D-------------------------------------------------------------------------------  130 (316)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ....++|+|||++...   ........||+.|+|||.+.+..++.++|+||+||++|+|++|..
T Consensus       131 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~el~~G~~  194 (316)
T cd05619         131 ----------------TDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSFGVLLYEMLIGQS  194 (316)
T ss_pred             ----------------CCCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCCCCchhhhhhHHHHHHHHHhCCC
Confidence                            2346899999988642   122344678999999999988889999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       195 pf~~~~~~~~~  205 (316)
T cd05619         195 PFHGHDEEELF  205 (316)
T ss_pred             CCCCCCHHHHH
Confidence            99887655543

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=5.6e-33  Score=259.77  Aligned_cols=188  Identities=17%  Similarity=0.283  Sum_probs=161.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+++.||+|++.+..    .....+.+|+.++..+ .|++      |++++++|...+++|+|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~------iv~~~~~~~~~~~~~lv   74 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPF------LVGLHSCFQTESRLFFV   74 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCc------CCceeeEEEeCCEEEEE
Confidence            57999999999999999999999999997532    2334567888888876 5666      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..++.++.|++.|                       |.|||+++++|||+|+.|+.+
T Consensus        75 ~E~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~~-----------------------l~~lH~~~ivH~Dikp~Nili  129 (329)
T cd05618          75 IEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLA-----------------------LNYLHERGIIYRDLKLDNVLL  129 (329)
T ss_pred             EeCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeCCCCHHHEEE
Confidence            9999 899999887654  57888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (329)
T cd05618         130 D-------------------------------------------------------------------------------  130 (329)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   ........||+.|+|||++.+..++.++|+||+||++|+|++|..
T Consensus       131 ----------------~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~  194 (329)
T cd05618         131 ----------------SEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS  194 (329)
T ss_pred             ----------------CCCCEEEeeCCccccccCCCCccccccCCccccCHHHHcCCCCCCccceecccHHHHHHhhCCC
Confidence                            2356899999988642   222345678999999999999999999999999999999999999


Q ss_pred             ccc
Q psy2006         313 LMA  315 (351)
Q Consensus       313 pf~  315 (351)
                      ||.
T Consensus       195 Pf~  197 (329)
T cd05618         195 PFD  197 (329)
T ss_pred             CCc
Confidence            995

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=3.2e-33  Score=260.69  Aligned_cols=198  Identities=18%  Similarity=0.280  Sum_probs=164.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||+|+||+||+|.+..+++.||+|++.+..    ...+....|..++..+.+ ++    +|+.+++.|...+++|+|
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~-~~----~i~~~~~~~~~~~~~~lv   79 (323)
T cd05616           5 LMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGK-PP----FLTQLHSCFQTMDRLYFV   79 (323)
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccC-CC----eEeeEEEEEecCCEEEEE
Confidence            367999999999999999999999999997532    222345678888887753 22    299999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..+..++.|++.|                       |+|||++|++|||+|+.|+.+
T Consensus        80 ~E~~~~g~L~~~~~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDlkp~Nill  134 (323)
T cd05616          80 MEYVNGGDLMYQIQQVG--RFKEPHAVFYAAEIAIG-----------------------LFFLHSKGIIYRDLKLDNVML  134 (323)
T ss_pred             EcCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEecCCCHHHeEE
Confidence            9999 899999987764  57788888888888887                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       135 ~-------------------------------------------------------------------------------  135 (323)
T cd05616         135 D-------------------------------------------------------------------------------  135 (323)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ....+||+|||++...   ........||+.|+|||++.+..++.++|+||+||++|+|+||..
T Consensus       136 ----------------~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~  199 (323)
T cd05616         136 ----------------SEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQA  199 (323)
T ss_pred             ----------------CCCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCCCCccchhchhHHHHHHHhCCC
Confidence                            2356899999988642   222345678999999999999999999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       200 Pf~~~~~~~~~  210 (323)
T cd05616         200 PFEGEDEDELF  210 (323)
T ss_pred             CCCCCCHHHHH
Confidence            99887765543

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=100.00  E-value=3.4e-33  Score=261.49  Aligned_cols=198  Identities=21%  Similarity=0.281  Sum_probs=164.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||+|+||+||++++..+++.||+|++.+..    .....+..|+.++..+.|++      |+++++.|...+++|+|
T Consensus         6 ~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~~~~~lv   79 (332)
T cd05623           6 LKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQW------ITTLHYAFQDENNLYLV   79 (332)
T ss_pred             EEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCC------EeeEEEEEecCCEEEEE
Confidence            367999999999999999999999999996532    22334677899999988777      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.+.. ..+++..++.++.|++.+                       |+|||+.+++|||+|+.|+.+
T Consensus        80 ~ey~~~g~L~~~l~~~~-~~l~~~~~~~~~~qi~~a-----------------------l~~lH~~~iiHrDlkp~Nili  135 (332)
T cd05623          80 MDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVIA-----------------------IDSVHQLHYVHRDIKPDNILM  135 (332)
T ss_pred             EeccCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEecCCCHHHEEE
Confidence            9999 999999998753 357888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       136 ~-------------------------------------------------------------------------------  136 (332)
T cd05623         136 D-------------------------------------------------------------------------------  136 (332)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            5                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeec-----CCCCCccceeeeeeeeEe
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILE-----LGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwslG~~l~~  306 (351)
                                      ....++|+|||++.....    ......||+.|+|||++.+     ..++.++|+|||||++|+
T Consensus       137 ----------------~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwSlGvil~e  200 (332)
T cd05623         137 ----------------MNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDGKGKYGPECDWWSLGVCMYE  200 (332)
T ss_pred             ----------------CCCCEEEeecchheecccCCcceecccccCccccCHHHHhccccCCCCCCCcCCEEeeHHHHHH
Confidence                            234689999998864211    1123578999999998862     457889999999999999


Q ss_pred             eccccccccccCCCcee
Q psy2006         307 LYLGITLMARKTKTKYF  323 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~~  323 (351)
                      |++|..||...+..+.+
T Consensus       201 ll~g~~Pf~~~~~~~~~  217 (332)
T cd05623         201 MLYGETPFYAESLVETY  217 (332)
T ss_pred             HhcCCCCCCCCCHHHHH
Confidence            99999999887655544

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=3.5e-33  Score=266.85  Aligned_cols=187  Identities=17%  Similarity=0.274  Sum_probs=161.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +++||+|+||.||+|.+..+++.||+|+...     ..+.+|+++|+.|+|+|      |++++++|....+.|+|||++
T Consensus        97 ~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~~-----~~~~~E~~il~~l~Hpn------Iv~~~~~~~~~~~~~lv~e~~  165 (391)
T PHA03212         97 LETFTPGAEGFAFACIDNKTCEHVVIKAGQR-----GGTATEAHILRAINHPS------IIQLKGTFTYNKFTCLILPRY  165 (391)
T ss_pred             EEEEcCCCCeEEEEEEECCCCCEEEEechhh-----hhhHHHHHHHHhCCCCC------CCCEeEEEEECCeeEEEEecC
Confidence            3679999999999999999999999998653     45678999999999888      999999999999999999999


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++....  .+++..++.++.|++.|                       |+|||++||+|||+||.||.+.    
T Consensus       166 ~~~L~~~l~~~~--~l~~~~~~~i~~qi~~a-----------------------L~ylH~~~IvHrDiKP~NIll~----  216 (391)
T PHA03212        166 KTDLYCYLAAKR--NIAICDILAIERSVLRA-----------------------IQYLHENRIIHRDIKAENIFIN----  216 (391)
T ss_pred             CCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCChHhEEEc----
Confidence            999999987764  57788888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       217 --------------------------------------------------------------------------------  216 (391)
T PHA03212        217 --------------------------------------------------------------------------------  216 (391)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceec----cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDD----EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                 ..+.++|+|||++....    .......||+.|+|||++.+..++.++|+||+||++|++++|..||..
T Consensus       217 -----------~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltg~~p~~~  285 (391)
T PHA03212        217 -----------HPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATCHDSLFE  285 (391)
T ss_pred             -----------CCCCEEEEeCCcccccccccccccccccCccCCCChhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCcCC
Confidence                       23468999999986422    122346799999999999988999999999999999999999988765


Q ss_pred             cC
Q psy2006         317 KT  318 (351)
Q Consensus       317 ~~  318 (351)
                      .+
T Consensus       286 ~~  287 (391)
T PHA03212        286 KD  287 (391)
T ss_pred             cc
Confidence            43

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.6e-33  Score=260.53  Aligned_cols=197  Identities=20%  Similarity=0.263  Sum_probs=163.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||+|+||+||++.+..+++.||+|++.+..    ...+.+..|+.+++.+.|++      |++++++|..++++|+|
T Consensus         6 ~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~~~~~lv   79 (331)
T cd05597           6 LKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRW------ITNLHYAFQDENNLYLV   79 (331)
T ss_pred             EEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCC------CCceEEEEecCCeEEEE
Confidence            367999999999999999999999999997522    23345678999999998777      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.+.. ..+++..++.++.|++.|                       |+|||+++++|||+|+.|+.+
T Consensus        80 ~e~~~g~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~dlkp~Nill  135 (331)
T cd05597          80 MDYYVGGDLLTLLSKFE-DRLPEDMARFYLAEMVLA-----------------------IDSVHQLGYVHRDIKPDNVLL  135 (331)
T ss_pred             EecCCCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEECCCCHHHEEE
Confidence            9999 999999997643 357888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       136 ~-------------------------------------------------------------------------------  136 (331)
T cd05597         136 D-------------------------------------------------------------------------------  136 (331)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            5                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeec-----CCCCCccceeeeeeeeEe
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILE-----LGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwslG~~l~~  306 (351)
                                      ..+.++|+|||++.....    ......||+.|+|||++..     ..++.++|+||+||++|+
T Consensus       137 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~~l~e  200 (331)
T cd05597         137 ----------------KNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMEDGKGRYGPECDWWSLGVCMYE  200 (331)
T ss_pred             ----------------CCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhccccccCCCCcceeehhhhHHHH
Confidence                            235689999998864321    1122468999999999863     346789999999999999


Q ss_pred             eccccccccccCCCce
Q psy2006         307 LYLGITLMARKTKTKY  322 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~  322 (351)
                      |++|..||.+.+..+.
T Consensus       201 l~~g~~Pf~~~~~~~~  216 (331)
T cd05597         201 MLYGETPFYAESLVET  216 (331)
T ss_pred             HhhCCCCCCCCCHHHH
Confidence            9999999987654443

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0577|consensus

Probab=100.00  E-value=6.9e-34  Score=267.24  Aligned_cols=199  Identities=20%  Similarity=0.245  Sum_probs=174.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      |+.||+|+||.||-|+|..+.+.||||.+.-+    ...-..+..|++.|++|.|+|      +|.+.+.|-.....|||
T Consensus        31 LrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPn------tieYkgCyLre~TaWLV  104 (948)
T KOG0577|consen   31 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPN------TIEYKGCYLREHTAWLV  104 (948)
T ss_pred             HHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCC------cccccceeeccchHHHH
Confidence            46899999999999999999999999999642    233457889999999999988      99999999999999999


Q ss_pred             EeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          77 FEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        77 ~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||||-||..|++.-.+ .++.+-.+..|..+.+.|                       |.|||+.+.+|||+|.+||.|+
T Consensus       105 MEYClGSAsDlleVhk-KplqEvEIAAi~~gaL~g-----------------------LaYLHS~~~IHRDiKAGNILLs  160 (948)
T KOG0577|consen  105 MEYCLGSASDLLEVHK-KPLQEVEIAAITHGALQG-----------------------LAYLHSHNRIHRDIKAGNILLS  160 (948)
T ss_pred             HHHHhccHHHHHHHHh-ccchHHHHHHHHHHHHHH-----------------------HHHHHHhhHHhhhccccceEec
Confidence            9999888888887664 467777777777777777                       9999999999999999999999


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      |                                                                               
T Consensus       161 e-------------------------------------------------------------------------------  161 (948)
T KOG0577|consen  161 E-------------------------------------------------------------------------------  161 (948)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            4                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec---CCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                      .+.|||+|||.+.. ..+.++++|||.|||||+|+.   +.|..++||||||++..+++-.++|
T Consensus       162 ----------------~g~VKLaDFGSAsi-~~PAnsFvGTPywMAPEVILAMDEGqYdgkvDvWSLGITCIELAERkPP  224 (948)
T KOG0577|consen  162 ----------------PGLVKLADFGSASI-MAPANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP  224 (948)
T ss_pred             ----------------CCeeeeccccchhh-cCchhcccCCccccchhHheeccccccCCccceeeccchhhhhhhcCCC
Confidence                            45799999999864 446789999999999999984   5689999999999999999999999


Q ss_pred             ccccCCCceeee
Q psy2006         314 MARKTKTKYFYH  325 (351)
Q Consensus       314 f~~~~~~~~~~~  325 (351)
                      +-..+.+..+|+
T Consensus       225 lFnMNAMSALYH  236 (948)
T KOG0577|consen  225 LFNMNAMSALYH  236 (948)
T ss_pred             ccCchHHHHHHH
Confidence            998888877663

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.98  E-value=5e-33  Score=258.86  Aligned_cols=196  Identities=17%  Similarity=0.282  Sum_probs=164.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+++.||+|++.+..    ........|+.+++.+. |++      |++++++|...+++|+|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~------i~~~~~~~~~~~~~~lv   74 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPF------LTQLHSCFQTKDRLFFV   74 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCC------ccceeeEEEcCCEEEEE
Confidence            57999999999999999999999999998542    23345667889998874 555      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..+..++.|++.|                       |.|||+++++|||+|+.|+.+
T Consensus        75 ~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~qi~~~-----------------------l~~LH~~~ivH~dlkp~Nill  129 (318)
T cd05570          75 MEYVNGGDLMFHIQRSG--RFDEPRARFYAAEIVLG-----------------------LQFLHERGIIYRDLKLDNVLL  129 (318)
T ss_pred             EcCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEccCCCHHHeEE
Confidence            9999 899999987764  57888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       130 ~-------------------------------------------------------------------------------  130 (318)
T cd05570         130 D-------------------------------------------------------------------------------  130 (318)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.++|+|||++...   .......+|++.|+|||++.+..++.++|+||+||++|++++|..
T Consensus       131 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslGvil~~l~~G~~  194 (318)
T cd05570         131 ----------------SEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWALGVLLYEMLAGQS  194 (318)
T ss_pred             ----------------CCCcEEecccCCCeecCcCCCcccceecCccccCHHHhcCCCCCcchhhhhHHHHHHHHhhCCC
Confidence                            2356899999987542   222234578999999999999999999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       195 pf~~~~~~~~~  205 (318)
T cd05570         195 PFEGDDEDELF  205 (318)
T ss_pred             CCCCCCHHHHH
Confidence            99877655443

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.98  E-value=4.1e-33  Score=260.03  Aligned_cols=195  Identities=18%  Similarity=0.298  Sum_probs=161.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHH---hCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQK---IGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~---l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      ++.||+|+||.||+|.+..+++.||||++++..    ...+.+.+|++++..   ++|+|      |++++++|...+++
T Consensus         4 ~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~------i~~~~~~~~~~~~~   77 (324)
T cd05589           4 LAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPF------LVNLFACFQTEDHV   77 (324)
T ss_pred             EEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCC------hhceeeEEEcCCEE
Confidence            367999999999999999999999999997532    223456677776654   45555      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      |+||||+ +++|...+...   .+++..+..++.|++.|                       |+|||+.|++|||+|+.|
T Consensus        78 ~lv~E~~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~a-----------------------l~~lH~~~ivHrdlkp~N  131 (324)
T cd05589          78 CFVMEYAAGGDLMMHIHTD---VFSEPRAVFYAACVVLG-----------------------LQYLHENKIVYRDLKLDN  131 (324)
T ss_pred             EEEEcCCCCCcHHHHhhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEecCCCHHH
Confidence            9999999 88999887653   47788888888888877                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       132 ill~----------------------------------------------------------------------------  135 (324)
T cd05589         132 LLLD----------------------------------------------------------------------------  135 (324)
T ss_pred             eEEC----------------------------------------------------------------------------
Confidence            9876                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                         ..+.+||+|||++...   ........|++.|+|||.+.+..++.++|+|||||++|+|++
T Consensus       136 -------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~~  196 (324)
T cd05589         136 -------------------TEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYTRAVDWWGLGVLIYEMLV  196 (324)
T ss_pred             -------------------CCCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCCCcccchhhHHHHHHHHHh
Confidence                               2356899999987642   222345678999999999998889999999999999999999


Q ss_pred             ccccccccCCCce
Q psy2006         310 GITLMARKTKTKY  322 (351)
Q Consensus       310 G~~pf~~~~~~~~  322 (351)
                      |..||.+.+..+.
T Consensus       197 G~~pf~~~~~~~~  209 (324)
T cd05589         197 GESPFPGDDEEEV  209 (324)
T ss_pred             CCCCCCCCCHHHH
Confidence            9999988765544

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.98  E-value=5.3e-33  Score=259.28  Aligned_cols=196  Identities=16%  Similarity=0.235  Sum_probs=163.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||.|+||+||+|.+..+++.||+|++.+..    ...+....|..++..+.|.+     +|+++++.|...+.+|+||
T Consensus         6 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~-----~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           6 MVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPP-----FLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCC-----chhheeeEEecCCEEEEEE
Confidence            57999999999999999999999999997542    22345667888888886432     2889999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|++|+.+.
T Consensus        81 Ey~~~g~L~~~i~~~~--~l~~~~~~~i~~qi~~a-----------------------l~~lH~~~ivHrDikp~Nill~  135 (323)
T cd05615          81 EYVNGGDLMYHIQQVG--KFKEPQAVFYAAEISVG-----------------------LFFLHRRGIIYRDLKLDNVMLD  135 (323)
T ss_pred             cCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCCHHHeEEC
Confidence            999 899999987764  57888888888888888                       9999999999999999999876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (323)
T cd05615         136 --------------------------------------------------------------------------------  135 (323)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ..+.++|+|||++....   .......||+.|+|||++.+..++.++|+||+||++|+|++|..|
T Consensus       136 ---------------~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~elltG~~p  200 (323)
T cd05615         136 ---------------SEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEMLAGQPP  200 (323)
T ss_pred             ---------------CCCCEEEeccccccccCCCCccccCccCCccccCHHHHcCCCCCCccchhhhHHHHHHHHhCCCC
Confidence                           23568999999876421   122345689999999999888899999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |.+.+..+.
T Consensus       201 f~~~~~~~~  209 (323)
T cd05615         201 FDGEDEDEL  209 (323)
T ss_pred             CCCCCHHHH
Confidence            988765543

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>KOG0612|consensus

Probab=99.98  E-value=1.9e-34  Score=287.76  Aligned_cols=216  Identities=21%  Similarity=0.280  Sum_probs=176.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||.|.+++.+.+++.||+|++++.    ......+..|-.+|..-.+.      +|++|.-+|.+++++|+||
T Consensus        81 KvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~------Wiv~LhyAFQD~~~LYlVM  154 (1317)
T KOG0612|consen   81 KVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSE------WIVQLHYAFQDERYLYLVM  154 (1317)
T ss_pred             HHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcH------HHHHHHHHhcCccceEEEE
Confidence            5699999999999999999999999999873    23455677888999765433      4999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ ||||..+|..+.  ++|++-|+                       +|..+++.||+-+|+.|.+|||+||+|+.|.
T Consensus       155 dY~pGGDlltLlSk~~--~~pE~~Ar-----------------------FY~aEiVlAldslH~mgyVHRDiKPDNvLld  209 (1317)
T KOG0612|consen  155 DYMPGGDLLTLLSKFD--RLPEDWAR-----------------------FYTAEIVLALDSLHSMGYVHRDIKPDNVLLD  209 (1317)
T ss_pred             ecccCchHHHHHhhcC--CChHHHHH-----------------------HHHHHHHHHHHHHHhccceeccCCcceeEec
Confidence            999 999999998876  45555444                       5555555559999999999999999999887


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       210 --------------------------------------------------------------------------------  209 (1317)
T KOG0612|consen  210 --------------------------------------------------------------------------------  209 (1317)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec--c--ccccccccceeeCceeeec-----CCCCCccceeeeeeeeEee
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--E--HHSTIVSTRHYRAPEVILE-----LGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~--~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwslG~~l~~l  307 (351)
                                     ..+++||+|||.|-...  .  ..+..+|||-|.+||++..     +.|+...|+||+|+++|||
T Consensus       210 ---------------~~GHikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEM  274 (1317)
T KOG0612|consen  210 ---------------KSGHIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEM  274 (1317)
T ss_pred             ---------------ccCcEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHH
Confidence                           45789999999986532  2  2356899999999999873     3578999999999999999


Q ss_pred             ccccccccccCCCceee-----ecccCCcccccccccccccCccC
Q psy2006         308 YLGITLMARKTKTKYFY-----HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      +.|.+||+.++-.++|-     ..-+.|+  ...  .||++||+|
T Consensus       275 lyG~TPFYadslveTY~KIm~hk~~l~FP--~~~--~VSeeakdL  315 (1317)
T KOG0612|consen  275 LYGETPFYADSLVETYGKIMNHKESLSFP--DET--DVSEEAKDL  315 (1317)
T ss_pred             HcCCCcchHHHHHHHHHHHhchhhhcCCC--ccc--ccCHHHHHH
Confidence            99999999998777773     2344555  333  499999987

>KOG4279|consensus

Probab=99.98  E-value=4.4e-33  Score=265.78  Aligned_cols=220  Identities=19%  Similarity=0.272  Sum_probs=178.4

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      .||.|.||+||-|+|+.+....|||-+... ..+.+....||++.++|+|.|      ||++++.+..++++-|.||-+ 
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkN------IVrYLGs~senGf~kIFMEqVP  655 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKN------IVRYLGSVSENGFFKIFMEQVP  655 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHh------HHHHhhccCCCCeEEEEeecCC
Confidence            389999999999999999999999999643 345567888999999999988      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      ||||.++++.... ++                     .-.+..+.+|.+|++.||.|||+..|+|||||-+|+.+-.   
T Consensus       656 GGSLSsLLrskWG-Pl---------------------KDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNT---  710 (1226)
T KOG4279|consen  656 GGSLSSLLRSKWG-PL---------------------KDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNT---  710 (1226)
T ss_pred             CCcHHHHHHhccC-CC---------------------ccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEee---
Confidence            9999999998852 32                     1256667777777777799999999999999999998762   


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       711 --------------------------------------------------------------------------------  710 (1226)
T KOG4279|consen  711 --------------------------------------------------------------------------------  710 (1226)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcce---eccccccccccceeeCceeeecC--CCCCccceeeeeeeeEeecccccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILEL--GWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~---~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                 =.+.+||+|||.++.   .+....++.||..|||||++-++  +|+.++|||||||++.||+||++||.
T Consensus       711 -----------ySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~  779 (1226)
T KOG4279|consen  711 -----------YSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFV  779 (1226)
T ss_pred             -----------ccceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCee
Confidence                       136799999998875   23344678999999999999864  68999999999999999999999997


Q ss_pred             ccCCCce-eee-cccCCcccccccccccccCcc
Q psy2006         316 RKTKTKY-FYH-GKLDWDEKGTAGRYVRENCKP  346 (351)
Q Consensus       316 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~  346 (351)
                      ....-.. ++. |  -+.-+++....+|++||.
T Consensus       780 ElgspqAAMFkVG--myKvHP~iPeelsaeak~  810 (1226)
T KOG4279|consen  780 ELGSPQAAMFKVG--MYKVHPPIPEELSAEAKN  810 (1226)
T ss_pred             ecCChhHhhhhhc--ceecCCCCcHHHHHHHHH
Confidence            6543222 211 1  144556666677777664

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=1.4e-32  Score=251.72  Aligned_cols=195  Identities=19%  Similarity=0.275  Sum_probs=165.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||++.+..+++.||+|++....    .....+.+|+.+++.++|++      |+++++.+..++++|+||
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~   79 (285)
T cd05605           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRF------VVSLAYAYETKDALCLVL   79 (285)
T ss_pred             EEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCC------EeeeeeeecCCCeEEEEE
Confidence            67999999999999998899999999997532    11234568999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++.......+++..+..++.|++.|                       +.|||+.+++|+|+++.|+.+.
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~dlkp~Nil~~  136 (285)
T cd05605          80 TLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCG-----------------------LEDLHRERIVYRDLKPENILLD  136 (285)
T ss_pred             eccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcEecCCCHHHEEEC
Confidence            999 8999998876654568888888888888888                       9999999999999999999876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                                                                               
T Consensus       137 ~-------------------------------------------------------------------------------  137 (285)
T cd05605         137 D-------------------------------------------------------------------------------  137 (285)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                      ...++|+|||++.....  ......|++.|+|||.+.+..++.++|+||+||++|++++|..||
T Consensus       138 ----------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Diws~G~~l~el~~g~~pf  201 (285)
T cd05605         138 ----------------YGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYTFSPDWWGLGCLIYEMIEGKSPF  201 (285)
T ss_pred             ----------------CCCEEEeeCCCceecCCCCccccccCCCCccCcHHhcCCCCCccccchhHHHHHHHHHHCCCCC
Confidence                            34689999998865322  223457889999999998888999999999999999999999999


Q ss_pred             cccCCC
Q psy2006         315 ARKTKT  320 (351)
Q Consensus       315 ~~~~~~  320 (351)
                      .+.+..
T Consensus       202 ~~~~~~  207 (285)
T cd05605         202 RQRKEK  207 (285)
T ss_pred             CCCchh
Confidence            876543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>KOG4250|consensus

Probab=99.98  E-value=2.4e-33  Score=269.24  Aligned_cols=199  Identities=21%  Similarity=0.207  Sum_probs=168.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------eE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------HM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~~   73 (351)
                      +.||.||||.||+|+++++|+.||||.++..  ...++..-+|+++|++|+|+|      ||+++|+=+...      .-
T Consensus        19 e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~N------IVk~f~iee~~~~~~~~~~~   92 (732)
T KOG4250|consen   19 ERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPN------IVKLFDIEETKFLGLVTRLP   92 (732)
T ss_pred             hhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchh------hhhhcccCCccccCcccccc
Confidence            4699999999999999999999999999763  344567788999999999888      999998876543      78


Q ss_pred             EEEEecc-CCCHHHHHHhc-CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKEN-NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~-~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      .+||||| ||||+..|.+- +..++|+..+..+...+..|                       +.|||+.||+|||+||+
T Consensus        93 vlvmEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~a-----------------------l~~LrEn~IvHRDlKP~  149 (732)
T KOG4250|consen   93 VLVMEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSA-----------------------LRHLRENGIVHRDLKPG  149 (732)
T ss_pred             eEEEeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHH-----------------------HHHHHHcCceeccCCCC
Confidence            9999999 99999999876 44578888888888888888                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.+-+               |.                                                         
T Consensus       150 NIvl~~---------------Ge---------------------------------------------------------  157 (732)
T KOG4250|consen  150 NIVLQI---------------GE---------------------------------------------------------  157 (732)
T ss_pred             cEEEee---------------cC---------------------------------------------------------
Confidence            998762               00                                                         


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeee-cCCCCCccceeeeeeeeEeec
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~~l~~l~  308 (351)
                                         +....-||+|||.++-.  +....+.+||+.|.+||+.. +..|+..+|.||+||++|+.+
T Consensus       158 -------------------dgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhPel~E~q~~y~~tVDLWS~GvtlY~ca  218 (732)
T KOG4250|consen  158 -------------------DGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHPELYERQKKYTATVDLWSFGVTLYECA  218 (732)
T ss_pred             -------------------CCceEEeeecccccccCCCCCeeeeecCchhhcChHHHhhccCcCceeehhhhhhHHHHHh
Confidence                               01234699999999763  44567899999999999998 478899999999999999999


Q ss_pred             cccccccccCCC
Q psy2006         309 LGITLMARKTKT  320 (351)
Q Consensus       309 tG~~pf~~~~~~  320 (351)
                      ||..||-+.-..
T Consensus       219 TG~lPF~p~~~p  230 (732)
T KOG4250|consen  219 TGELPFIPFGGP  230 (732)
T ss_pred             ccCCCCCcCCCc
Confidence            999999665433

>KOG4721|consensus

Probab=99.98  E-value=3.6e-33  Score=261.47  Aligned_cols=190  Identities=18%  Similarity=0.272  Sum_probs=166.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      |+=||.|+.|.||+|+  ..++.||||+++.      --..+|+-|++|+|+|      ||...++++....+|||||||
T Consensus       129 LeWlGSGaQGAVF~Gr--l~netVAVKKV~e------lkETdIKHLRkLkH~N------II~FkGVCtqsPcyCIiMEfC  194 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGR--LHNETVAVKKVRE------LKETDIKHLRKLKHPN------IITFKGVCTQSPCYCIIMEFC  194 (904)
T ss_pred             hhhhccCcccceeeee--ccCceehhHHHhh------hhhhhHHHHHhccCcc------eeeEeeeecCCceeEEeeecc
Confidence            3558999999999999  6799999999963      2245899999999988      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       .|.|...++...  .+.......+..+|+.|                       ++|||.+.|+|||+|.-||.|+   
T Consensus       195 a~GqL~~VLka~~--~itp~llv~Wsk~IA~G-----------------------M~YLH~hKIIHRDLKSPNiLIs---  246 (904)
T KOG4721|consen  195 AQGQLYEVLKAGR--PITPSLLVDWSKGIAGG-----------------------MNYLHLHKIIHRDLKSPNILIS---  246 (904)
T ss_pred             ccccHHHHHhccC--ccCHHHHHHHHHHhhhh-----------------------hHHHHHhhHhhhccCCCceEee---
Confidence             999999999876  45666677777777777                       9999999999999999999887   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       247 --------------------------------------------------------------------------------  246 (904)
T KOG4721|consen  247 --------------------------------------------------------------------------------  246 (904)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                  -...|||+|||.+....  ....+++||..|||||+|...+++.|+|||||||+||||+||..||..-
T Consensus       247 ------------~~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~EiPYkdV  314 (904)
T KOG4721|consen  247 ------------YDDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGEIPYKDV  314 (904)
T ss_pred             ------------ccceEEeccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcCCCcccc
Confidence                        23579999999886533  3556799999999999999999999999999999999999999999998


Q ss_pred             CCCceee
Q psy2006         318 TKTKYFY  324 (351)
Q Consensus       318 ~~~~~~~  324 (351)
                      +.+-+++
T Consensus       315 dssAIIw  321 (904)
T KOG4721|consen  315 DSSAIIW  321 (904)
T ss_pred             chheeEE
Confidence            8887764

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.98  E-value=7.7e-33  Score=253.25  Aligned_cols=195  Identities=26%  Similarity=0.413  Sum_probs=163.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||+|+||+||+|+++.+++.||+|++....   ...+.+.+|+.+++.++|+|      |++++++|..+++.|+|||
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           7 GVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQEN------IVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             EEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCcc------ccchhhhEecCCEEEEEEe
Confidence            57999999999999999999999999997532   23456778999999999887      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |+.+++.+.+.... ..+++..++.++.|++.|                       |.|||+.+++|||+|+.|+.+.  
T Consensus        81 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~qi~~~-----------------------L~~lH~~~i~H~dlkp~Nill~--  134 (287)
T cd07848          81 YVEKNMLELLEEMP-NGVPPEKVRSYIYQLIKA-----------------------IHWCHKNDIVHRDIKPENLLIS--  134 (287)
T ss_pred             cCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEEEc--
Confidence            99555555555443 357888888888888888                       9999999999999999999876  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (287)
T cd07848         135 --------------------------------------------------------------------------------  134 (287)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                   ....+||+|||++.....    ......|++.|+|||.+.+..++.++|+||+||++|++++|.+||
T Consensus       135 -------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el~~g~~pf  201 (287)
T cd07848         135 -------------HNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVGCILGELSDGQPLF  201 (287)
T ss_pred             -------------CCCcEEEeeccCcccccccccccccccccccccCCcHHHcCCCCCCchhHHhHHHHHHHHHhCCCCC
Confidence                         234689999998865322    223457899999999998888999999999999999999999999


Q ss_pred             cccCCCc
Q psy2006         315 ARKTKTK  321 (351)
Q Consensus       315 ~~~~~~~  321 (351)
                      .+.+..+
T Consensus       202 ~~~~~~~  208 (287)
T cd07848         202 PGESEID  208 (287)
T ss_pred             CCCCHHH
Confidence            8766443

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.98  E-value=3.4e-32  Score=254.55  Aligned_cols=192  Identities=25%  Similarity=0.326  Sum_probs=159.3

Q ss_pred             CccccCcccceEEEEEEe---ecCcEEEEEEecchh-----hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCC
Q psy2006           1 MCSLNCVASNHVCTNVVY---EVDSVVALKIIKNVE-----KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~~-----~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      +++||+|+||+||++.+.   .+++.||+|++.+..     ...+....|+++++.+. |++      |+.++++|..++
T Consensus         5 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~------i~~~~~~~~~~~   78 (332)
T cd05614           5 LKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPF------LVTLHYAFQTEA   78 (332)
T ss_pred             EEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCC------cccEEEEEecCC
Confidence            367999999999999864   478999999997532     22345678999999995 455      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      .+++||||+ +++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+
T Consensus        79 ~~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivHrDlkp  133 (332)
T cd05614          79 KLHLILDYVSGGEMFTHLYQRD--NFSEDEVRFYSGEIILA-----------------------LEHLHKLGIVYRDIKL  133 (332)
T ss_pred             EEEEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcEecCCCH
Confidence            999999999 899999997754  57888888888888888                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .||.+.                                                                          
T Consensus       134 ~Nili~--------------------------------------------------------------------------  139 (332)
T cd05614         134 ENILLD--------------------------------------------------------------------------  139 (332)
T ss_pred             HHeEEC--------------------------------------------------------------------------
Confidence            999876                                                                          


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceec----cccccccccceeeCceeeecC-CCCCccceeeeeeeeE
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD----EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIF  305 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~----~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~  305 (351)
                                           ..+.++|+|||++....    .......||+.|+|||.+.+. .++.++|+|||||++|
T Consensus       140 ---------------------~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~  198 (332)
T cd05614         140 ---------------------SEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGGHGKAVDWWSLGILIF  198 (332)
T ss_pred             ---------------------CCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCCCCCccccccchhhhh
Confidence                                 23468999999886421    122346789999999999765 4788999999999999


Q ss_pred             eeccccccccccC
Q psy2006         306 ELYLGITLMARKT  318 (351)
Q Consensus       306 ~l~tG~~pf~~~~  318 (351)
                      +|+||..||....
T Consensus       199 elltg~~pf~~~~  211 (332)
T cd05614         199 ELLTGASPFTLEG  211 (332)
T ss_pred             hhhcCCCCCCCCC
Confidence            9999999997543

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.98  E-value=2.4e-32  Score=249.59  Aligned_cols=191  Identities=15%  Similarity=0.196  Sum_probs=160.8

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecchhh----hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNVEK----YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~----~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ||+|+||+||+|.+..+++.||+|++.....    ..+.+..|+++++.+.|++      |+++.++|....+.|+||||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~------i~~~~~~~~~~~~~~lv~e~   74 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRF------IVSLAYAFQTKTDLCLVMTI   74 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCc------EeeeeEEEcCCCeEEEEEeC
Confidence            7999999999999999999999999975321    2245678999999998877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          80 L-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        80 ~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      + +++|.+++...  ....+++..+..++.|++.|                       |+|||+++++|||+|+.|+.+.
T Consensus        75 ~~~g~L~~~~~~~~~~~~~l~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dlkp~Nili~  131 (280)
T cd05608          75 MNGGDLRYHIYNVDEENPGFPEPRACFYTAQIISG-----------------------LEHLHQRRIIYRDLKPENVLLD  131 (280)
T ss_pred             CCCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHEEEC
Confidence            9 89999887543  22357788888888888888                       9999999999999999999875


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (280)
T cd05608         132 --------------------------------------------------------------------------------  131 (280)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ....++|+|||++.....   ......||+.|+|||.+.+..++.++|+||+||++|++++|..|
T Consensus       132 ---------------~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~p  196 (280)
T cd05608         132 ---------------NDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGEEYDFSVDYFALGVTLYEMIAARGP  196 (280)
T ss_pred             ---------------CCCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcCCCCCccccHHHHHHHHHHHHhCCCC
Confidence                           234689999998864322   12335789999999999999999999999999999999999999


Q ss_pred             ccccC
Q psy2006         314 MARKT  318 (351)
Q Consensus       314 f~~~~  318 (351)
                      |...+
T Consensus       197 f~~~~  201 (280)
T cd05608         197 FRARG  201 (280)
T ss_pred             CCCCC
Confidence            97654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG0690|consensus

Probab=99.98  E-value=1.2e-33  Score=249.22  Aligned_cols=206  Identities=20%  Similarity=0.298  Sum_probs=176.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      |+.||.|.||.|-+++.+.+++.||||++++.    .+...+...|-++|+..+|+.      +..|.-.|..++++|+|
T Consensus       173 LKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPF------Lt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  173 LKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPF------LTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             HHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcH------HHHhhhhhccCceEEEE
Confidence            46799999999999999999999999999874    344456678999999999888      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ ||.|+-.+.+..  .++++.++-+...|..|                       |.|||+++|+.||+|..|++|
T Consensus       247 MeyanGGeLf~HLsrer--~FsE~RtRFYGaEIvsA-----------------------L~YLHs~~ivYRDlKLENLlL  301 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRER--VFSEDRTRFYGAEIVSA-----------------------LGYLHSRNIVYRDLKLENLLL  301 (516)
T ss_pred             EEEccCceEeeehhhhh--cccchhhhhhhHHHHHH-----------------------hhhhhhCCeeeeechhhhhee
Confidence            9999 999998888865  45555555555555554                       999999999999999999887


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       302 D-------------------------------------------------------------------------------  302 (516)
T KOG0690|consen  302 D-------------------------------------------------------------------------------  302 (516)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcce---eccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||+|.-   ......+.||||.|+|||++....|+.++|+|.+|+++|||.+|+.
T Consensus       303 ----------------kDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRL  366 (516)
T KOG0690|consen  303 ----------------KDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRL  366 (516)
T ss_pred             ----------------cCCceEeeecccchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccC
Confidence                            357899999999974   3445678999999999999999999999999999999999999999


Q ss_pred             cccccCCCceee---ecccCCcc
Q psy2006         313 LMARKTKTKYFY---HGKLDWDE  332 (351)
Q Consensus       313 pf~~~~~~~~~~---~~~~~~~~  332 (351)
                      ||+..+.+++|.   -+++.|+.
T Consensus       367 PFyn~dh~kLFeLIl~ed~kFPr  389 (516)
T KOG0690|consen  367 PFYNKDHEKLFELILMEDLKFPR  389 (516)
T ss_pred             cccccchhHHHHHHHhhhccCCc
Confidence            999999998874   35555543

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=1.5e-32  Score=257.19  Aligned_cols=192  Identities=24%  Similarity=0.378  Sum_probs=159.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-----eE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-----HM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-----~~   73 (351)
                      ++||+|+||.||+|++..+++.||||++...   ......+.+|+++++.++|+|      |+++++++....     ++
T Consensus         6 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~~~~~   79 (338)
T cd07859           6 EVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPD------IVEIKHIMLPPSRREFKDI   79 (338)
T ss_pred             EEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCC------EeeecceEeccCCCCCceE
Confidence            6799999999999999999999999998642   122345778999999999888      999999886443     68


Q ss_pred             EEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          74 CIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        74 ~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |+||||++++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.|+
T Consensus        80 ~lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~dlkp~NI  134 (338)
T cd07859          80 YVVFELMESDLHQVIKAND--DLTPEHHQFFLYQLLRA-----------------------LKYIHTANVFHRDLKPKNI  134 (338)
T ss_pred             EEEEecCCCCHHHHHHhcc--cCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHe
Confidence            9999999999999987754  57777888888888777                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       135 ll~-----------------------------------------------------------------------------  137 (338)
T cd07859         135 LAN-----------------------------------------------------------------------------  137 (338)
T ss_pred             EEC-----------------------------------------------------------------------------
Confidence            876                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeec--CCCCCccceeeeeeeeE
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILE--LGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~--~~~~~~~DiwslG~~l~  305 (351)
                                        ..+.+||+|||++.....      ......||+.|+|||++.+  ..++.++|+||+||++|
T Consensus       138 ------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DvwSlGvvl~  199 (338)
T cd07859         138 ------------------ADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFA  199 (338)
T ss_pred             ------------------CCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHHhccccccCchhHHHHHHHHHH
Confidence                              235689999999864211      1134578999999999865  57789999999999999


Q ss_pred             eeccccccccccCC
Q psy2006         306 ELYLGITLMARKTK  319 (351)
Q Consensus       306 ~l~tG~~pf~~~~~  319 (351)
                      +|++|.+||.+.+.
T Consensus       200 el~tg~~pf~~~~~  213 (338)
T cd07859         200 EVLTGKPLFPGKNV  213 (338)
T ss_pred             HHHcCCCCCCCCCh
Confidence            99999999987653

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.97  E-value=5.1e-32  Score=247.06  Aligned_cols=191  Identities=22%  Similarity=0.296  Sum_probs=162.1

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ||.|+||+||++.++.+++.||+|.+....    ........|+++++.++|++      |+++.+.|..+.++|+||||
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~------i~~~~~~~~~~~~~~lv~e~   74 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPF------IVNLAYAFESKTHLCLVMSL   74 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCc------EEEEEEEEecCCeEEEEEec
Confidence            799999999999999999999999997532    12234567999999999887      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + |++|.+++.......+++..+..++.|++.|                       |+|||+.|++|||+|+.|+.+.+ 
T Consensus        75 ~~g~~L~~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~ivH~dikp~Nili~~-  130 (277)
T cd05607          75 MNGGDLKYHIYNVGERGLEMERVIHYSAQITCG-----------------------ILHLHSMDIVYRDMKPENVLLDD-  130 (277)
T ss_pred             CCCCCHHHHHHhccccCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEEccCChHhEEEcC-
Confidence            9 8999999877655567777788888888887                       99999999999999999998862 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (277)
T cd05607         131 --------------------------------------------------------------------------------  130 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                    ...++|+|||++.....  ......|++.|+|||.+.+..++.++|+||+||++|++++|..||..
T Consensus       131 --------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGv~l~el~~g~~p~~~  196 (277)
T cd05607         131 --------------QGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCSIYEMVAGRTPFKD  196 (277)
T ss_pred             --------------CCCEEEeeceeeeecCCCceeeccCCCCCccCHHHHccCCCCCchhHHHHHHHHHHHHhCCCCCCC
Confidence                          34689999998765322  22345688999999999888899999999999999999999999976


Q ss_pred             cC
Q psy2006         317 KT  318 (351)
Q Consensus       317 ~~  318 (351)
                      ..
T Consensus       197 ~~  198 (277)
T cd05607         197 HK  198 (277)
T ss_pred             Cc
Confidence            43

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.97  E-value=2.7e-32  Score=253.41  Aligned_cols=197  Identities=21%  Similarity=0.356  Sum_probs=157.9

Q ss_pred             ccccCcccceEEEEEEe--ecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee--CCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVY--EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY--HGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~--~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~--~~~~~lV~   77 (351)
                      ++||+|+||+||+|+++  .+++.||+|++.... ....+.+|+++|++++|+|      |++++++|..  +.++|+||
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~-~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~~~lv~   79 (317)
T cd07868           7 CKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG-ISMSACREIALLRELKHPN------VISLQKVFLSHADRKVWLLF   79 (317)
T ss_pred             cccccCCCeEEEEEEEccCCCCceEEEEEECCCC-CcHHHHHHHHHHHhcCCCC------CcceeeeEecCCCcEEEEEE
Confidence            58999999999999965  467899999997532 2345678999999999888      9999999964  45899999


Q ss_pred             eccCCCHHHHHHhcC-------CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          78 EILGLSVFDFLKENN-------YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        78 E~~g~sL~~~l~~~~-------~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      ||++++|.+++....       ...+++..++.++.|++.|                       |+|||++|++|||+|+
T Consensus        80 e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~a-----------------------l~~LH~~~ivHrDlkp  136 (317)
T cd07868          80 DYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDG-----------------------IHYLHANWVLHRDLKP  136 (317)
T ss_pred             eccCCCHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEEcCCCCH
Confidence            999999999886432       1246666777777777776                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .|+.+.+-+                                                                       
T Consensus       137 ~Nil~~~~~-----------------------------------------------------------------------  145 (317)
T cd07868         137 ANILVMGEG-----------------------------------------------------------------------  145 (317)
T ss_pred             HHEEEecCC-----------------------------------------------------------------------
Confidence            999885100                                                                       


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecC-CCCCccceeeeeee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCI  303 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~  303 (351)
                                          .....+||+|||++.....      ......||+.|+|||++.+. .++.++|+||+||+
T Consensus       146 --------------------~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~i  205 (317)
T cd07868         146 --------------------PERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCI  205 (317)
T ss_pred             --------------------CCcCcEEEeecCceeccCCCCccccccCCccccccccCCHHHcCCCCcCchhhHHHHHHH
Confidence                                0235699999999865322      22346789999999999874 57899999999999


Q ss_pred             eEeeccccccccccCC
Q psy2006         304 IFELYLGITLMARKTK  319 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~  319 (351)
                      +|+|++|.+||.+...
T Consensus       206 l~el~~g~~~f~~~~~  221 (317)
T cd07868         206 FAELLTSEPIFHCRQE  221 (317)
T ss_pred             HHHHHhCCCCccCCcc
Confidence            9999999999976543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.97  E-value=3.6e-32  Score=254.48  Aligned_cols=195  Identities=23%  Similarity=0.302  Sum_probs=166.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||+|+||.||++++..++..||+|++...  ....+.+.+|+++|+.++|+|      |+++++++..++.+++|||
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e   83 (331)
T cd06649          10 ISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPY------IVGFYGAFYSDGEISICME   83 (331)
T ss_pred             EEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCC------CCeEEEEEEECCEEEEEee
Confidence            35799999999999999999999999999753  234467889999999999887      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCeEEe
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDIRLI  156 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni~l~  156 (351)
                      |+ +++|.+++....  .+++..+..++.|++.+                       |.|||++ +++|||+|+.|+.+.
T Consensus        84 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~~ivH~dlkp~Nil~~  138 (331)
T cd06649          84 HMDGGSLDQVLKEAK--RIPEEILGKVSIAVLRG-----------------------LAYLREKHQIMHRDVKPSNILVN  138 (331)
T ss_pred             cCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHhhcCCEEcCCCChhhEEEc
Confidence            99 889999998764  57788888888888887                       9999986 599999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (331)
T cd06649         139 --------------------------------------------------------------------------------  138 (331)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCccee-ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFD-DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                     ....++|+|||++... ........|++.|+|||.+.+..++.++|+||+||++|++++|+.||.
T Consensus       139 ---------------~~~~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~il~el~tg~~p~~  203 (331)
T cd06649         139 ---------------SRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVELAIGRYPIP  203 (331)
T ss_pred             ---------------CCCcEEEccCcccccccccccccCCCCcCcCCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCC
Confidence                           2346899999988653 223345678999999999998889999999999999999999999997


Q ss_pred             ccCCCc
Q psy2006         316 RKTKTK  321 (351)
Q Consensus       316 ~~~~~~  321 (351)
                      ..+..+
T Consensus       204 ~~~~~~  209 (331)
T cd06649         204 PPDAKE  209 (331)
T ss_pred             CCCHHH
Confidence            655433

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.97  E-value=1.4e-32  Score=266.68  Aligned_cols=195  Identities=22%  Similarity=0.356  Sum_probs=159.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--------CeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--------GHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--------~~~   73 (351)
                      +.||+|+||+||+|++..+++.||||++....   ....+|+.+|+.++|+|      |++++++|...        ..+
T Consensus        72 ~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~---~~~~~Ei~il~~l~h~n------iv~l~~~~~~~~~~~~~~~~~l  142 (440)
T PTZ00036         72 NIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP---QYKNRELLIMKNLNHIN------IIFLKDYYYTECFKKNEKNIFL  142 (440)
T ss_pred             EEEEeCCCEEEEEEEECCCCCEEEEEEEecCc---chHHHHHHHHHhcCCCC------CcceeeeEeecccccCCCceEE
Confidence            57999999999999998899999999986532   23457999999999888      99999987543        268


Q ss_pred             EEEEeccCCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          74 CIAFEILGLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        74 ~lV~E~~g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      ++||||++++|.+++...  ....+++..++.++.|++.|                       |+|||+++++|||+|+.
T Consensus       143 ~lvmE~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~g-----------------------L~yLH~~~IiHrDLKp~  199 (440)
T PTZ00036        143 NVVMEFIPQTVHKYMKHYARNNHALPLFLVKLYSYQLCRA-----------------------LAYIHSKFICHRDLKPQ  199 (440)
T ss_pred             EEEEecCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEecCCcCHH
Confidence            899999988998888653  23457777788888888777                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+..                                                                          
T Consensus       200 NILl~~--------------------------------------------------------------------------  205 (440)
T PTZ00036        200 NLLIDP--------------------------------------------------------------------------  205 (440)
T ss_pred             HEEEcC--------------------------------------------------------------------------
Confidence            998751                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecC-CCCCccceeeeeeeeEeec
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~  308 (351)
                                          ....+||+|||++....  .......||+.|+|||++.+. .++.++|+||+||++|+|+
T Consensus       206 --------------------~~~~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell  265 (440)
T PTZ00036        206 --------------------NTHTLKLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMI  265 (440)
T ss_pred             --------------------CCCceeeeccccchhccCCCCcccCCCCcCccCHHHhcCCCCCCcHHHHHHHHHHHHHHH
Confidence                                12358999999987532  223346789999999998764 6899999999999999999


Q ss_pred             cccccccccCCCce
Q psy2006         309 LGITLMARKTKTKY  322 (351)
Q Consensus       309 tG~~pf~~~~~~~~  322 (351)
                      +|.+||.+.+..+.
T Consensus       266 tG~~pf~~~~~~~~  279 (440)
T PTZ00036        266 LGYPIFSGQSSVDQ  279 (440)
T ss_pred             hCCCCCCCCChHHH
Confidence            99999998765543

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.97  E-value=2.6e-32  Score=250.13  Aligned_cols=199  Identities=22%  Similarity=0.373  Sum_probs=163.2

Q ss_pred             CccccCcccceEEEEEEee-cCcEEEEEEecchh---hhhHHHHHHHHHHHHhC---CCCCCCCcceeeeeeeEee----
Q psy2006           1 MCSLNCVASNHVCTNVVYE-VDSVVALKIIKNVE---KYREAARLEINALQKIG---EKDPNGRHLCVKMLDWFDY----   69 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~-~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~---h~~~~g~~~Iv~l~~~f~~----   69 (351)
                      +++||+|+||+||+|++.. +++.||+|++....   .......+|+.+++.+.   |+|      |+++++++..    
T Consensus         6 ~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpn------iv~~~~~~~~~~~~   79 (290)
T cd07862           6 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPN------VVRLFDVCTVSRTD   79 (290)
T ss_pred             eeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCC------cceEEEEEecccCC
Confidence            3679999999999999854 57899999997532   22345567888888774   555      9999999863    


Q ss_pred             -CCeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccccc
Q psy2006          70 -HGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV  148 (351)
Q Consensus        70 -~~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~  148 (351)
                       ...+++||||++++|.+++.......+++..++.++.|++.|                       |.|||++|++|||+
T Consensus        80 ~~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~~lH~~~iiH~dl  136 (290)
T cd07862          80 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRG-----------------------LDFLHSHRVVHRDL  136 (290)
T ss_pred             CCCcEEEEEccCCCCHHHHHHhCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeCCC
Confidence             347999999998899999987655567888888888888888                       99999999999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      |+.|+.+.                                                                        
T Consensus       137 kp~Nil~~------------------------------------------------------------------------  144 (290)
T cd07862         137 KPQNILVT------------------------------------------------------------------------  144 (290)
T ss_pred             CHHHEEEc------------------------------------------------------------------------
Confidence            99999886                                                                        


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                             ..+.++|+|||++.....  ......||+.|+|||.+.+..++.++|+||+||++|+
T Consensus       145 -----------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~il~e  201 (290)
T cd07862         145 -----------------------SSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAE  201 (290)
T ss_pred             -----------------------CCCCEEEccccceEeccCCcccccccccccccChHHHhCCCCCCccchHHHHHHHHH
Confidence                                   235689999999865332  2345678999999999988889999999999999999


Q ss_pred             eccccccccccCCCcee
Q psy2006         307 LYLGITLMARKTKTKYF  323 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~~  323 (351)
                      +++|.+||.+.+..+.+
T Consensus       202 l~~g~~~f~~~~~~~~~  218 (290)
T cd07862         202 MFRRKPLFRGSSDVDQL  218 (290)
T ss_pred             HHcCCCCcCCCCHHHHH
Confidence            99999999987765543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0670|consensus

Probab=99.97  E-value=4.8e-32  Score=251.63  Aligned_cols=203  Identities=29%  Similarity=0.506  Sum_probs=181.8

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccCCC
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS   83 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g~s   83 (351)
                      .|.|-||+|.+|.|+..+..||||+|.+.+.-.+.-+.|+.||++|...++.++.|+++++-.|.-..|+|||||.+..+
T Consensus       440 ~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknHLClVFE~LslN  519 (752)
T KOG0670|consen  440 TGKGVFSTVVRARDQARGQEVAIKIIRNNEVMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNHLCLVFEPLSLN  519 (752)
T ss_pred             cccceeeeeeeccccCCCCeeEEEEeecchHHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcceeEEEehhhhch
Confidence            58999999999999999999999999987767778889999999999888889999999999999999999999999999


Q ss_pred             HHHHHHhc-CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcc
Q psy2006          84 VFDFLKEN-NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSAT  162 (351)
Q Consensus        84 L~~~l~~~-~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~  162 (351)
                      |.++++.. ...++.+..|+.++.||..|                       |..|-.-||+|-||||.|+.+-      
T Consensus       520 LRevLKKyG~nvGL~ikaVRsYaqQLflA-----------------------LklLK~c~vlHaDIKPDNiLVN------  570 (752)
T KOG0670|consen  520 LREVLKKYGRNVGLHIKAVRSYAQQLFLA-----------------------LKLLKKCGVLHADIKPDNILVN------  570 (752)
T ss_pred             HHHHHHHhCcccceeehHHHHHHHHHHHH-----------------------HHHHHhcCeeecccCccceEec------
Confidence            99999988 45678999999999999998                       9999999999999999999876      


Q ss_pred             cCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhcc
Q psy2006         163 FDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSS  242 (351)
Q Consensus       163 ~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (351)
                                                                                                      
T Consensus       571 --------------------------------------------------------------------------------  570 (752)
T KOG0670|consen  571 --------------------------------------------------------------------------------  570 (752)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             chhhhhhhccccceeeeccCCcceecc-ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCCCc
Q psy2006         243 VSSLVMRRVRRCDIRLIDFGSATFDDE-HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       243 ~~~~~~~~~~~~~vkl~dfg~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                              .....+||||||.+.+... ..+...-+..|.|||+++|.+|....|+||+||+||||.||+.+|.|.|...
T Consensus       571 --------E~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~~yd~~iD~WSvgctLYElYtGkIlFpG~TNN~  642 (752)
T KOG0670|consen  571 --------ESKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGLPYDYPIDTWSVGCTLYELYTGKILFPGRTNNQ  642 (752)
T ss_pred             --------cCcceeeeccCccccccccccccHHHHHHhccCcceeecCcccCCccceeeceeeEEeeccceecCCCCcHH
Confidence                    1346689999999877443 4444555678999999999999999999999999999999999999999776


Q ss_pred             ee
Q psy2006         322 YF  323 (351)
Q Consensus       322 ~~  323 (351)
                      -+
T Consensus       643 ML  644 (752)
T KOG0670|consen  643 ML  644 (752)
T ss_pred             HH
Confidence            54

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.97  E-value=5.5e-32  Score=247.64  Aligned_cols=197  Identities=21%  Similarity=0.345  Sum_probs=162.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhC---CCCCCCCcceeeeeeeEeeC----
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIG---EKDPNGRHLCVKMLDWFDYH----   70 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~---h~~~~g~~~Iv~l~~~f~~~----   70 (351)
                      +++||+|+||+||+|.++.+++.||+|.+....   .......+|+.+++.+.   |+|      |+++++++...    
T Consensus         5 ~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~n------i~~~~~~~~~~~~~~   78 (288)
T cd07863           5 VAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPN------IVRLMDVCATSRTDR   78 (288)
T ss_pred             eeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCC------eeeeeeeeccccCCC
Confidence            368999999999999999999999999997532   12234567888887774   555      99999998753    


Q ss_pred             -CeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccC
Q psy2006          71 -GHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR  149 (351)
Q Consensus        71 -~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k  149 (351)
                       .++++||||++++|.+++.......+++..++.++.|++.|                       |.|+|++|++|||+|
T Consensus        79 ~~~~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~ivH~dik  135 (288)
T cd07863          79 ETKVTLVFEHVDQDLRTYLDKVPPPGLPAETIKDLMRQFLRG-----------------------LDFLHANCIVHRDLK  135 (288)
T ss_pred             CceEEEEEcccccCHHHHHHhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCC
Confidence             37999999998899999987654557888888888888888                       999999999999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      ++|+.+.                                                                         
T Consensus       136 p~Nili~-------------------------------------------------------------------------  142 (288)
T cd07863         136 PENILVT-------------------------------------------------------------------------  142 (288)
T ss_pred             HHHEEEC-------------------------------------------------------------------------
Confidence            9999876                                                                         


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                            ....+||+|||++.....  ......|++.|+|||++.+..++.++|+||+||++|+|
T Consensus       143 ----------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  200 (288)
T cd07863         143 ----------------------SGGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEM  200 (288)
T ss_pred             ----------------------CCCCEEECccCccccccCcccCCCccccccccCchHhhCCCCCCcchhhhHHHHHHHH
Confidence                                  234689999998875432  22345778999999999888899999999999999999


Q ss_pred             ccccccccccCCCc
Q psy2006         308 YLGITLMARKTKTK  321 (351)
Q Consensus       308 ~tG~~pf~~~~~~~  321 (351)
                      ++|.+||.+.+..+
T Consensus       201 ~~g~~~f~~~~~~~  214 (288)
T cd07863         201 FRRKPLFCGNSEAD  214 (288)
T ss_pred             HhCCcCcCCCCHHH
Confidence            99999998766543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.97  E-value=1.3e-31  Score=245.52  Aligned_cols=193  Identities=19%  Similarity=0.274  Sum_probs=164.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||.|+||+||+|.+..+++.||+|.+....    .....+..|+.+++.++|++      |+.+++.+...+++|+||
T Consensus         6 ~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~------i~~~~~~~~~~~~~~lv~   79 (285)
T cd05630           6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRF------VVSLAYAYETKDALCLVL   79 (285)
T ss_pred             EEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCC------eeeeeEEEecCCEEEEEE
Confidence            57999999999999999999999999986532    12234678999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++.......+++..+..++.|++.|                       |.|||+.+++|+|+|+.|+.+.
T Consensus        80 e~~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~-----------------------l~~lH~~~iiH~dikp~Nil~~  136 (285)
T cd05630          80 TLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCG-----------------------LEDLHQERIVYRDLKPENILLD  136 (285)
T ss_pred             EecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEEeCCCCHHHEEEC
Confidence            999 8999999876655568888888888888888                       9999999999999999999875


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (285)
T cd05630         137 --------------------------------------------------------------------------------  136 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                     ....++|+|||++.....  ......|++.|+|||.+.+..++.++|+||+||++|++++|..||
T Consensus       137 ---------------~~~~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~Pf  201 (285)
T cd05630         137 ---------------DHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPF  201 (285)
T ss_pred             ---------------CCCCEEEeeccceeecCCCccccCCCCCccccChHHHcCCCCCCccccHHHHHHHHHHHhCCCCC
Confidence                           134589999998765322  223457899999999999888999999999999999999999999


Q ss_pred             cccC
Q psy2006         315 ARKT  318 (351)
Q Consensus       315 ~~~~  318 (351)
                      ....
T Consensus       202 ~~~~  205 (285)
T cd05630         202 QQRK  205 (285)
T ss_pred             CCCC
Confidence            8654

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.97  E-value=1.2e-31  Score=245.55  Aligned_cols=194  Identities=20%  Similarity=0.284  Sum_probs=166.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||.|+||+||+|.+..+++.||+|++....    .....+.+|+++|+.++|++      |+.+.+.|..++..|+||
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~------i~~~~~~~~~~~~~~lv~   79 (285)
T cd05632           6 RVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQF------VVNLAYAYETKDALCLVL   79 (285)
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcC------ceeEEEEEecCCEEEEEE
Confidence            57999999999999999999999999997532    22334678999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++...+...+++..+..++.|++.+                       |.|||++|++|||+++.|+.+.
T Consensus        80 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~-----------------------l~~lH~~~iiH~dikp~Nili~  136 (285)
T cd05632          80 TIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCG-----------------------LEDLHRENTVYRDLKPENILLD  136 (285)
T ss_pred             EeccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeecCCCHHHEEEC
Confidence            999 8899999877655578899999999988888                       9999999999999999999875


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                                                                               
T Consensus       137 ~-------------------------------------------------------------------------------  137 (285)
T cd05632         137 D-------------------------------------------------------------------------------  137 (285)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                      ...++|+|||++.....  ......|++.|+|||.+.+..++.++|+||+||++|++++|..||
T Consensus       138 ----------------~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~P~  201 (285)
T cd05632         138 ----------------YGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYTLSPDYWGLGCLIYEMIEGQSPF  201 (285)
T ss_pred             ----------------CCCEEEecCCcceecCCCCcccCCCCCcCccChHHhcCCCCCcccchHHHHHHHHHHHhCCCCC
Confidence                            34689999998865322  223457899999999998888999999999999999999999999


Q ss_pred             cccCC
Q psy2006         315 ARKTK  319 (351)
Q Consensus       315 ~~~~~  319 (351)
                      .....
T Consensus       202 ~~~~~  206 (285)
T cd05632         202 RGRKE  206 (285)
T ss_pred             CCCCH
Confidence            86543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>KOG1152|consensus

Probab=99.97  E-value=7.9e-32  Score=252.92  Aligned_cols=192  Identities=21%  Similarity=0.335  Sum_probs=167.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhh---------hHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeC
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKY---------REAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYH   70 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~---------~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~   70 (351)
                      |+++|+||||.||+|++++....|+||.+.+...-         -..+..||+||..|. |+|+|    |++++|+|+++
T Consensus       566 lq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~N----IlKlLdfFEdd  641 (772)
T KOG1152|consen  566 LQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHEN----ILKLLDFFEDD  641 (772)
T ss_pred             eeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccc----hhhhhheeecC
Confidence            57899999999999999999999999999875321         124567999999997 44444    99999999999


Q ss_pred             CeEEEEEecc--CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccccc
Q psy2006          71 GHMCIAFEIL--GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV  148 (351)
Q Consensus        71 ~~~~lV~E~~--g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~  148 (351)
                      +++||+||..  |.+|+++|....  .+.|..++-+++|+..|                       +.+||++||+|||+
T Consensus       642 d~yyl~te~hg~gIDLFd~IE~kp--~m~E~eAk~IFkQV~ag-----------------------i~hlh~~~ivhrdi  696 (772)
T KOG1152|consen  642 DYYYLETEVHGEGIDLFDFIEFKP--RMDEPEAKLIFKQVVAG-----------------------IKHLHDQGIVHRDI  696 (772)
T ss_pred             CeeEEEecCCCCCcchhhhhhccC--ccchHHHHHHHHHHHhc-----------------------cccccccCceeccc
Confidence            9999999999  679999999886  57888888888888888                       99999999999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      |+.|+.+.                                                                        
T Consensus       697 kdenvivd------------------------------------------------------------------------  704 (772)
T KOG1152|consen  697 KDENVIVD------------------------------------------------------------------------  704 (772)
T ss_pred             ccccEEEe------------------------------------------------------------------------
Confidence            99999876                                                                        


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcce-eccccccccccceeeCceeeecCCC-CCccceeeeeeeeEe
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF-DDEHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFE  306 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~  306 (351)
                                             ..+-+||+|||.+.. ...+....+||..|.|||++.|.+| +.+.|||++|+++|.
T Consensus       705 -----------------------~~g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgillyt  761 (772)
T KOG1152|consen  705 -----------------------SNGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGILLYT  761 (772)
T ss_pred             -----------------------cCCeEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhheeeE
Confidence                                   356799999998765 4667788999999999999999998 888999999999999


Q ss_pred             eccccccccc
Q psy2006         307 LYLGITLMAR  316 (351)
Q Consensus       307 l~tG~~pf~~  316 (351)
                      ++..+.||+.
T Consensus       762 ivykenpyyn  771 (772)
T KOG1152|consen  762 IVYKENPYYN  771 (772)
T ss_pred             EEeccCCCcC
Confidence            9999999863

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.97  E-value=1.2e-31  Score=253.75  Aligned_cols=190  Identities=23%  Similarity=0.400  Sum_probs=160.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~   72 (351)
                      ++||.|+||.||+|.+..+++.||+|++...   ......+.+|+.+++.++|+|      |++++++|...+      +
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~~~~~  100 (359)
T cd07876          27 KPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKN------IISLLNVFTPQKSLEEFQD  100 (359)
T ss_pred             EEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCC------EeeeeeeeccCCCccccce
Confidence            6799999999999999999999999999643   233456778999999999888      999999997554      5


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +|+||||++++|.+.+..    .+++..++.++.|++.|                       |.|||++|++|||+|+.|
T Consensus       101 ~~lv~e~~~~~l~~~~~~----~~~~~~~~~~~~qi~~~-----------------------L~~LH~~~ivHrDlkp~N  153 (359)
T cd07876         101 VYLVMELMDANLCQVIHM----ELDHERMSYLLYQMLCG-----------------------IKHLHSAGIIHRDLKPSN  153 (359)
T ss_pred             eEEEEeCCCcCHHHHHhc----cCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCHHH
Confidence            899999998888887643    36777777777777777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       154 Il~~----------------------------------------------------------------------------  157 (359)
T cd07876         154 IVVK----------------------------------------------------------------------------  157 (359)
T ss_pred             EEEC----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                         ..+.+||+|||++....  .......||+.|+|||++.+..++.++|+||+||++|+|++|
T Consensus       158 -------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~el~tg  218 (359)
T cd07876         158 -------------------SDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKG  218 (359)
T ss_pred             -------------------CCCCEEEecCCCccccccCccCCCCcccCCCCCchhccCCCCCcchhhHHHHHHHHHHHhC
Confidence                               23568999999986532  223446789999999999999999999999999999999999


Q ss_pred             cccccccCC
Q psy2006         311 ITLMARKTK  319 (351)
Q Consensus       311 ~~pf~~~~~  319 (351)
                      ..||.+.+.
T Consensus       219 ~~pf~~~~~  227 (359)
T cd07876         219 SVIFQGTDH  227 (359)
T ss_pred             CCCCCCCCH
Confidence            999987654

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.97  E-value=4.7e-32  Score=257.69  Aligned_cols=195  Identities=22%  Similarity=0.338  Sum_probs=163.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-----e
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-----H   72 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-----~   72 (351)
                      +++||+|+||+||+|.+..+++.||+|++...   ....+.+.+|+.+++.++|+|      |+++++++...+     +
T Consensus         5 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~~~~   78 (372)
T cd07853           5 DRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDN------VLSALDILQPPHIDPFEE   78 (372)
T ss_pred             cceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCC------cCCHhheecCCCccccce
Confidence            47899999999999999889999999998642   223456788999999999888      999999998877     8


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +|+||||++++|.+.+....  .+++..++.++.|++.|                       |.|||++|++|||+|+.|
T Consensus        79 ~~lv~e~~~~~l~~~~~~~~--~l~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivH~dlkp~N  133 (372)
T cd07853          79 IYVVTELMQSDLHKIIVSPQ--PLSSDHVKVFLYQILRG-----------------------LKYLHSAGILHRDIKPGN  133 (372)
T ss_pred             EEEEeeccccCHHHHHhcCC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeCCCCChHH
Confidence            99999999889999886653  57788888888888887                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       134 ili~----------------------------------------------------------------------------  137 (372)
T cd07853         134 LLVN----------------------------------------------------------------------------  137 (372)
T ss_pred             EEEC----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecC-CCCCccceeeeeeeeEee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l  307 (351)
                                         ..+.+||+|||++.....    ......+++.|+|||.+.+. .++.++|+||+||++++|
T Consensus       138 -------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el  198 (372)
T cd07853         138 -------------------SNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVGCIFAEL  198 (372)
T ss_pred             -------------------CCCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCCCCCCcHHHHHhHHHHHHHH
Confidence                               235689999998865322    22334678899999998874 468899999999999999


Q ss_pred             ccccccccccCCCc
Q psy2006         308 YLGITLMARKTKTK  321 (351)
Q Consensus       308 ~tG~~pf~~~~~~~  321 (351)
                      ++|..||.+.+..+
T Consensus       199 ~~g~~pf~~~~~~~  212 (372)
T cd07853         199 LGRRILFQAQSPIQ  212 (372)
T ss_pred             HcCCCCCCCCCHHH
Confidence            99999998776543

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.97  E-value=1.3e-31  Score=250.95  Aligned_cols=194  Identities=22%  Similarity=0.284  Sum_probs=165.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||.|+||.||+|.+..+++.+|+|++...  ....+.+.+|+++++.++|+|      |++++++|..++++|+|||
T Consensus        10 ~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e   83 (333)
T cd06650          10 ISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPY------IVGFYGAFYSDGEISICME   83 (333)
T ss_pred             eccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCc------ccceeEEEEECCEEEEEEe
Confidence            36899999999999999999999999998753  233456789999999999887      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCeEEe
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDIRLI  156 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni~l~  156 (351)
                      |+ +++|.+++....  .+++..++.++.|++.+                       +.|||++ +++|+|+|+.|+.+.
T Consensus        84 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~-----------------------l~~lH~~~~ivH~dlkp~Nili~  138 (333)
T cd06650          84 HMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKG-----------------------LTYLREKHKIMHRDVKPSNILVN  138 (333)
T ss_pred             cCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhcCCEEecCCChhhEEEc
Confidence            99 899999998754  57888888888888888                       9999975 799999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                                                                               
T Consensus       139 ~-------------------------------------------------------------------------------  139 (333)
T cd06650         139 S-------------------------------------------------------------------------------  139 (333)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                      .+.+||+|||++.... .......|++.|+|||++.+..++.++|+||+||++|++++|..||.
T Consensus       140 ----------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~  203 (333)
T cd06650         140 ----------------RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAIGRYPIP  203 (333)
T ss_pred             ----------------CCCEEEeeCCcchhhhhhccccCCCCccccCHHHhcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                            3468999999886532 22344678999999999988889999999999999999999999998


Q ss_pred             ccCCC
Q psy2006         316 RKTKT  320 (351)
Q Consensus       316 ~~~~~  320 (351)
                      ..+..
T Consensus       204 ~~~~~  208 (333)
T cd06650         204 PPDAK  208 (333)
T ss_pred             Ccchh
Confidence            66543

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.97  E-value=6.5e-32  Score=250.12  Aligned_cols=197  Identities=23%  Similarity=0.359  Sum_probs=164.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||+|+||+||+|.+..+++.||+|+++...  .......+|+++++.++|+|      |+++++++..+++.|+|||
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e   84 (309)
T cd07872          11 LEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN------IVTLHDIVHTDKSLTLVFE   84 (309)
T ss_pred             EEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCC------cceEEEEEeeCCeEEEEEe
Confidence            367999999999999999999999999997532  22345678999999999887      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |++++|.+++.... ..+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+.  
T Consensus        85 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~a-----------------------L~~lH~~~ivH~dlkp~Nill~--  138 (309)
T cd07872          85 YLDKDLKQYMDDCG-NIMSMHNVKIFLYQILRG-----------------------LAYCHRRKVLHRDLKPQNLLIN--  138 (309)
T ss_pred             CCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEEEC--
Confidence            99889999987764 346777788888888877                       9999999999999999999886  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (309)
T cd07872         139 --------------------------------------------------------------------------------  138 (309)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                   ....++|+|||++.....   ......+++.|+|||.+.+ ..++.++|+||+||++++|+||..||
T Consensus       139 -------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~tg~~pf  205 (309)
T cd07872         139 -------------ERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVGCIFFEMASGRPLF  205 (309)
T ss_pred             -------------CCCCEEECccccceecCCCccccccccccccccCCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence                         234689999998865322   2234567889999998875 45788999999999999999999999


Q ss_pred             cccCCCce
Q psy2006         315 ARKTKTKY  322 (351)
Q Consensus       315 ~~~~~~~~  322 (351)
                      .+.+..+.
T Consensus       206 ~~~~~~~~  213 (309)
T cd07872         206 PGSTVEDE  213 (309)
T ss_pred             CCCChHHH
Confidence            88765443

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.97  E-value=9.7e-32  Score=263.48  Aligned_cols=198  Identities=22%  Similarity=0.276  Sum_probs=164.7

Q ss_pred             ccccCcccceEEEEEEeec-CcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEV-DSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~-~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||+|+||.||+|.+..+ ++.||+|.+... ......+.+|+.+|+.++|+|      |++++++|..++++||||||
T Consensus        73 ~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpn------iv~~~~~~~~~~~~~lv~E~  146 (478)
T PTZ00267         73 TLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFG------IVKHFDDFKSDDKLLLIMEY  146 (478)
T ss_pred             EEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCC------EeEEEEEEEECCEEEEEEEC
Confidence            5799999999999998777 788999987543 233345678999999999888      99999999999999999999


Q ss_pred             c-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          80 L-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        80 ~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      + +++|.+++...  ...++++..+..++.|++.|                       |+|||+++++|||+|+.||.+.
T Consensus       147 ~~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~a-----------------------L~~lH~~~ivHrDlkp~NIll~  203 (478)
T PTZ00267        147 GSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLA-----------------------LDEVHSRKMMHRDLKSANIFLM  203 (478)
T ss_pred             CCCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEEECCcCHHhEEEC
Confidence            9 99999988653  22356677777777777777                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       204 --------------------------------------------------------------------------------  203 (478)
T PTZ00267        204 --------------------------------------------------------------------------------  203 (478)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                     ....+||+|||++......     ....+||+.|+|||++.+..++.++|+||+||++|+|++|.
T Consensus       204 ---------------~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~tg~  268 (478)
T PTZ00267        204 ---------------PTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRYSKKADMWSLGVILYELLTLH  268 (478)
T ss_pred             ---------------CCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCCCcHHhHHHHHHHHHHHHhCC
Confidence                           2356899999998753321     23457999999999998888999999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      .||.+.+..+++
T Consensus       269 ~Pf~~~~~~~~~  280 (478)
T PTZ00267        269 RPFKGPSQREIM  280 (478)
T ss_pred             CCCCCCCHHHHH
Confidence            999877655443

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.97  E-value=9.9e-32  Score=252.55  Aligned_cols=192  Identities=24%  Similarity=0.460  Sum_probs=162.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC------C
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH------G   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~------~   71 (351)
                      ++.||.|+||+||+|.+..+++.||+|++....   .....+.+|+++|+.++|+|      |++++++|...      .
T Consensus        20 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~   93 (343)
T cd07878          20 LTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHEN------VIGLLDVFTPATSIENFN   93 (343)
T ss_pred             heecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCc------hhhhhhhhcccccccccC
Confidence            367999999999999999999999999997532   22345678999999999887      99999998644      3


Q ss_pred             eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          72 HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        72 ~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +.|+++|+++++|.++++..   .+++..++.++.|++.|                       |+|||+.|++|||+|+.
T Consensus        94 ~~~~~~~~~~~~l~~~~~~~---~l~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivHrdikp~  147 (343)
T cd07878          94 EVYLVTNLMGADLNNIVKCQ---KLSDEHVQFLIYQLLRG-----------------------LKYIHSAGIIHRDLKPS  147 (343)
T ss_pred             cEEEEeecCCCCHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecccCChh
Confidence            68999999999999887643   47888888888888888                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.                                                                           
T Consensus       148 Nil~~---------------------------------------------------------------------------  152 (343)
T cd07878         148 NVAVN---------------------------------------------------------------------------  152 (343)
T ss_pred             hEEEC---------------------------------------------------------------------------
Confidence            99886                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccc
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                          ..+.+||+|||++...........||+.|+|||++.+ ..++.++|+||+||++|+|++|
T Consensus       153 --------------------~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g  212 (343)
T cd07878         153 --------------------EDCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKG  212 (343)
T ss_pred             --------------------CCCCEEEcCCccceecCCCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHC
Confidence                                2356899999998876555566788999999999876 4678999999999999999999


Q ss_pred             cccccccCC
Q psy2006         311 ITLMARKTK  319 (351)
Q Consensus       311 ~~pf~~~~~  319 (351)
                      ..||.+.+.
T Consensus       213 ~~pf~~~~~  221 (343)
T cd07878         213 KALFPGNDY  221 (343)
T ss_pred             CCCCCCCCH
Confidence            999976543

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.97  E-value=1.4e-31  Score=250.94  Aligned_cols=219  Identities=19%  Similarity=0.266  Sum_probs=161.7

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC-e
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG-H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~-~   72 (351)
                      ++||.|+||+||+|.+.     .+++.||+|++...  ......+.+|+.+|+.+ .|+|      |+++++++...+ .
T Consensus        13 ~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~n------iv~~~~~~~~~~~~   86 (338)
T cd05102          13 KVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLN------VVNLLGACTKPNGP   86 (338)
T ss_pred             eEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcc------eeeEEeEecCCCCc
Confidence            67999999999999853     34678999999753  23345678999999999 6776      999999887654 7


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCC--CCchHH--HHHHHHHHHHhh---------------------------------hc
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYL--PYSLDQ--VRHMSYQLIYAK---------------------------------EN  114 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~--~~~~~~--~~~~~~ql~~~~---------------------------------~~  114 (351)
                      +++||||+ +|+|.+++......  .+.+..  ...-+..+....                                 ..
T Consensus        87 ~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (338)
T cd05102          87 LMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDL  166 (338)
T ss_pred             eEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcccc
Confidence            99999999 99999999865321  111100  000000000000                                 00


Q ss_pred             CCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHH
Q psy2006         115 NYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQL  194 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~  194 (351)
                      ...++++..+..++.|++.||.|||++|++|||+|+.|+.+.+                                     
T Consensus       167 ~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~-------------------------------------  209 (338)
T cd05102         167 WKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNILLSE-------------------------------------  209 (338)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcC-------------------------------------
Confidence            1125777888888999999999999999999999999998761                                     


Q ss_pred             HHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----
Q psy2006         195 FDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----  269 (351)
Q Consensus       195 ~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----  269 (351)
                                                                                ...+||+|||++.....     
T Consensus       210 ----------------------------------------------------------~~~~kl~DfG~a~~~~~~~~~~  231 (338)
T cd05102         210 ----------------------------------------------------------NNVVKICDFGLARDIYKDPDYV  231 (338)
T ss_pred             ----------------------------------------------------------CCcEEEeecccccccccCcchh
Confidence                                                                      34689999998864221     


Q ss_pred             ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccCCCc
Q psy2006         270 HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKTKTK  321 (351)
Q Consensus       270 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~  321 (351)
                      ......+++.|+|||.+.+..++.++|+|||||++|++++ |..||.+....+
T Consensus       232 ~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~~pf~~~~~~~  284 (338)
T cd05102         232 RKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQINE  284 (338)
T ss_pred             cccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCCCCCCCCCccH
Confidence            1123345678999999988889999999999999999996 999998866544

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.97  E-value=1.7e-31  Score=271.57  Aligned_cols=206  Identities=17%  Similarity=0.166  Sum_probs=154.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||.|+||.||+|.+..+++.||+|++...    ....+.+.+|+++++.+.|+|      |+++++++..++..|+||
T Consensus         8 ~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPN------IVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          8 RLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPG------IVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             EEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcC------cCeEEEEEeeCCEEEEEE
Confidence            6899999999999999999999999999753    223456788999999999888      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCC-CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          78 EIL-GLSVFDFLKENNY-LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||+ |++|.+++..... ..++....               ...+...+..++.|++.||+|||++|++|||+||.||.+
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~---------------~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILL  146 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELA---------------EKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILL  146 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhh---------------cccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEE
Confidence            999 8999999875321 01111100               012223333444444555999999999999999999755


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       147 d~------------------------------------------------------------------------------  148 (932)
T PRK13184        147 GL------------------------------------------------------------------------------  148 (932)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            41                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceec---------------------cccccccccceeeCceeeecCCCCCc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---------------------EHHSTIVSTRHYRAPEVILELGWAQP  294 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---------------------~~~~~~~gt~~y~aPE~~~~~~~~~~  294 (351)
                                       .+.++|+|||++....                     ......+||+.|+|||.+.+..++.+
T Consensus       149 -----------------dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~~s~~t~~g~~vGT~~YmAPE~l~g~~~S~k  211 (932)
T PRK13184        149 -----------------FGEVVILDWGAAIFKKLEEEDLLDIDVDERNICYSSMTIPGKIVGTPDYMAPERLLGVPASES  211 (932)
T ss_pred             -----------------CCCEEEEecCcceecccccccccccccccccccccccccCCCCCCCCCCCCHHHhcCCCCCcH
Confidence                             1234455555443210                     01123578999999999999999999


Q ss_pred             cceeeeeeeeEeeccccccccccCCCcee
Q psy2006         295 CDVWSIGCIIFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       295 ~DiwslG~~l~~l~tG~~pf~~~~~~~~~  323 (351)
                      +|+||+||++|+|+||..||.+.+..+..
T Consensus       212 SDIWSLGVILyELLTG~~PF~~~~~~ki~  240 (932)
T PRK13184        212 TDIYALGVILYQMLTLSFPYRRKKGRKIS  240 (932)
T ss_pred             hHHHHHHHHHHHHHHCCCCCCCcchhhhh
Confidence            99999999999999999999886665544

>KOG0193|consensus

Probab=99.97  E-value=1e-31  Score=253.90  Aligned_cols=194  Identities=18%  Similarity=0.239  Sum_probs=167.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||+|.||+||+|.+  .| .||||++..+   ...-+.+..|+.++++.+|.|      |+-.++++..+++ .||..
T Consensus       398 ~rIGsGsFGtV~Rg~w--hG-dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~N------IlLFMG~~~~p~~-AIiTq  467 (678)
T KOG0193|consen  398 ERIGSGSFGTVYRGRW--HG-DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHEN------ILLFMGACMNPPL-AIITQ  467 (678)
T ss_pred             ceeccccccceeeccc--cc-ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhh------heeeehhhcCCce-eeeeh
Confidence            5799999999999994  34 4999999764   244567899999999999988      9999999999988 99999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      +| |.+|+.+++-.. ..|.....+.|++|++.|                       ++|||.++|+|||+|..||.|- 
T Consensus       468 wCeGsSLY~hlHv~e-tkfdm~~~idIAqQiaqG-----------------------M~YLHAK~IIHrDLKSnNIFl~-  522 (678)
T KOG0193|consen  468 WCEGSSLYTHLHVQE-TKFDMNTTIDIAQQIAQG-----------------------MDYLHAKNIIHRDLKSNNIFLH-  522 (678)
T ss_pred             hccCchhhhhccchh-hhhhHHHHHHHHHHHHHh-----------------------hhhhhhhhhhhhhccccceEEc-
Confidence            99 889999998775 568888899999999988                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       523 --------------------------------------------------------------------------------  522 (678)
T KOG0193|consen  523 --------------------------------------------------------------------------------  522 (678)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCccee-----ccccccccccceeeCceeeec---CCCCCccceeeeeeeeEeecc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFD-----DEHHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-----~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwslG~~l~~l~t  309 (351)
                                    ....|||+|||++...     ........|...|||||+++.   .+|++.+||||||+++|||+|
T Consensus       523 --------------~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS~qSDVYaFGiV~YELlt  588 (678)
T KOG0193|consen  523 --------------EDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFSFQSDVYAFGIVWYELLT  588 (678)
T ss_pred             --------------cCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCCcccchhhhhHHHHHHHh
Confidence                          2367999999998652     223455678889999999974   478999999999999999999


Q ss_pred             ccccccccCCCceee
Q psy2006         310 GITLMARKTKTKYFY  324 (351)
Q Consensus       310 G~~pf~~~~~~~~~~  324 (351)
                      |..||...+.+.++.
T Consensus       589 g~lPysi~~~dqIif  603 (678)
T KOG0193|consen  589 GELPYSIQNRDQIIF  603 (678)
T ss_pred             CcCCcCCCChhheEE
Confidence            999999888777765

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.97  E-value=1.5e-31  Score=252.39  Aligned_cols=188  Identities=21%  Similarity=0.312  Sum_probs=153.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||.|+||+||+|.+..+++.||||++...  ....+.+.+|+++++.++|+|      |++++++|...+.+++|||
T Consensus        79 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e  152 (353)
T PLN00034         79 VNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPN------VVKCHDMFDHNGEIQVLLE  152 (353)
T ss_pred             hhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCC------cceeeeEeccCCeEEEEEe
Confidence            36799999999999999889999999999643  233456789999999999887      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+.      ...++..+..++.|++.|                       |.|||++|++|||+|+.||.+. 
T Consensus       153 ~~~~~~L~~~------~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivHrDlkp~NIll~-  202 (353)
T PLN00034        153 FMDGGSLEGT------HIADEQFLADVARQILSG-----------------------IAYLHRRHIVHRDIKPSNLLIN-  202 (353)
T ss_pred             cCCCCccccc------ccCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeecCCCHHHEEEc-
Confidence            99 8887642      234566666777777776                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       203 --------------------------------------------------------------------------------  202 (353)
T PLN00034        203 --------------------------------------------------------------------------------  202 (353)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeec-----CCCCCccceeeeeeeeEeecc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILE-----LGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwslG~~l~~l~t  309 (351)
                                    ....+||+|||++......   .....||+.|+|||.+..     ...+.++|||||||++|++++
T Consensus       203 --------------~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DvwslGvil~el~~  268 (353)
T PLN00034        203 --------------SAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAYDGYAGDIWSLGVSILEFYL  268 (353)
T ss_pred             --------------CCCCEEEcccccceecccccccccccccCccccCccccccccccCcCCCcchhHHHHHHHHHHHHh
Confidence                          2356899999998753322   234678999999998743     223568999999999999999


Q ss_pred             ccccccccC
Q psy2006         310 GITLMARKT  318 (351)
Q Consensus       310 G~~pf~~~~  318 (351)
                      |+.||....
T Consensus       269 g~~pf~~~~  277 (353)
T PLN00034        269 GRFPFGVGR  277 (353)
T ss_pred             CCCCCCCCC
Confidence            999998443

>KOG1187|consensus

Probab=99.97  E-value=5.3e-31  Score=247.53  Aligned_cols=192  Identities=22%  Similarity=0.267  Sum_probs=163.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhh-hHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-eEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKY-REAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-HMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~-~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-~~~lV~E~   79 (351)
                      ..||+|+||.||+|.. .+++.||||.+...... ..++.+|+.++.+++|+|      +++|++++.+.+ +.+||+||
T Consensus        81 ~~ig~Ggfg~VYkG~l-~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~N------lv~LlGyC~e~~~~~~LVYEy  153 (361)
T KOG1187|consen   81 NLIGEGGFGTVYKGVL-SDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPN------LVKLLGYCLEGGEHRLLVYEY  153 (361)
T ss_pred             cceecCCCeEEEEEEE-CCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcC------cccEEEEEecCCceEEEEEEc
Confidence            3699999999999996 34499999988764433 456999999999999888      999999999999 69999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc---ccccccCCCCeEE
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK---REVRRVRRCDIRL  155 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~---i~h~d~k~~ni~l  155 (351)
                      + .|+|.+.+......++++..-.+|+.+++.|                       |+|||...   |+|||+|++||.|
T Consensus       154 m~nGsL~d~L~~~~~~~L~W~~R~kIa~g~A~g-----------------------L~yLH~~~~~~iiHrDiKssNILL  210 (361)
T KOG1187|consen  154 MPNGSLEDHLHGKKGEPLDWETRLKIALGAARG-----------------------LAYLHEGCPPPIIHRDIKSSNILL  210 (361)
T ss_pred             cCCCCHHHHhCCCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHccCCCCCEecCCCCHHHeeE
Confidence            9 8999999988753367888888888888888                       99999854   9999999999998


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       211 D-------------------------------------------------------------------------------  211 (361)
T KOG1187|consen  211 D-------------------------------------------------------------------------------  211 (361)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            7                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc-cc--ccc-cccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-HH--STI-VSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-~~--~~~-~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                      .....||+|||++..... ..  ... .||..|++||.+..+..+.++||||||+++.|++||+
T Consensus       212 ----------------~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~PEy~~~g~lt~KsDVySFGVvllElitgr  275 (361)
T KOG1187|consen  212 ----------------EDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLAPEYASTGKLTEKSDVYSFGVVLLELITGR  275 (361)
T ss_pred             ----------------CCCCEEccCccCcccCCccccceeeecCCCCccCChhhhccCCcCcccccccchHHHHHHHhCC
Confidence                            356799999999965433 22  222 8999999999998888899999999999999999999


Q ss_pred             ccccccC
Q psy2006         312 TLMARKT  318 (351)
Q Consensus       312 ~pf~~~~  318 (351)
                      .+.+...
T Consensus       276 ~~~d~~~  282 (361)
T KOG1187|consen  276 KAVDQSR  282 (361)
T ss_pred             cccCCCC
Confidence            9888643

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.97  E-value=1.9e-31  Score=252.74  Aligned_cols=192  Identities=22%  Similarity=0.409  Sum_probs=160.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~   72 (351)
                      +.||+|+||.||+|.+..+++.||||++...   ......+.+|+.+++.+.|+|      |++++++|....      +
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------ii~~~~~~~~~~~~~~~~~  103 (364)
T cd07875          30 KPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN------IIGLLNVFTPQKSLEEFQD  103 (364)
T ss_pred             EEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCC------ccccceeecccccccccCe
Confidence            5799999999999999999999999999753   233456778999999999888      999999886543      6


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      .|+||||++++|.+.+..    .+++..++.++.|++.|                       |+|||++|++|||+|+.|
T Consensus       104 ~~lv~e~~~~~l~~~~~~----~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivH~Dlkp~N  156 (364)
T cd07875         104 VYIVMELMDANLCQVIQM----ELDHERMSYLLYQMLCG-----------------------IKHLHSAGIIHRDLKPSN  156 (364)
T ss_pred             EEEEEeCCCCCHHHHHHh----cCCHHHHHHHHHHHHHH-----------------------HHHHhhCCeecCCCCHHH
Confidence            899999998899888754    35677777777777777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       157 Ill~----------------------------------------------------------------------------  160 (364)
T cd07875         157 IVVK----------------------------------------------------------------------------  160 (364)
T ss_pred             EEEC----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                         ....+||+|||++.....  ......||+.|+|||++.+..++.++|+|||||++|+|++|
T Consensus       161 -------------------~~~~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g  221 (364)
T cd07875         161 -------------------SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKG  221 (364)
T ss_pred             -------------------CCCcEEEEeCCCccccCCCCcccCCcccCCcCCHHHHhCCCCCchhhHHhHHHHHHHHHhC
Confidence                               235689999999875432  22346789999999999998999999999999999999999


Q ss_pred             cccccccCCCc
Q psy2006         311 ITLMARKTKTK  321 (351)
Q Consensus       311 ~~pf~~~~~~~  321 (351)
                      ..||.+.+..+
T Consensus       222 ~~pf~~~~~~~  232 (364)
T cd07875         222 GVLFPGTDHID  232 (364)
T ss_pred             CCCCCCCCHHH
Confidence            99998766433

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG0696|consensus

Probab=99.97  E-value=1.6e-32  Score=248.77  Aligned_cols=198  Identities=18%  Similarity=0.273  Sum_probs=166.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ..||.|+||.|-+|..+.+.+.||||+++++    .++.+....|-++|.....+-     ++++|...|..-+.+|+||
T Consensus       355 ~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kpp-----FL~qlHScFQTmDRLyFVM  429 (683)
T KOG0696|consen  355 MVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPP-----FLVQLHSCFQTMDRLYFVM  429 (683)
T ss_pred             EEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCc-----hHHHHHHHhhhhhheeeEE
Confidence            4699999999999999999999999999875    234444556777776654322     4999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ ||+|.-.|+..+  .+.|..|.-++..|+.|                       |-+||++||+.||+|.+|++|.
T Consensus       430 EyvnGGDLMyhiQQ~G--kFKEp~AvFYAaEiaig-----------------------LFFLh~kgIiYRDLKLDNvmLd  484 (683)
T KOG0696|consen  430 EYVNGGDLMYHIQQVG--KFKEPVAVFYAAEIAIG-----------------------LFFLHSKGIIYRDLKLDNVMLD  484 (683)
T ss_pred             EEecCchhhhHHHHhc--ccCCchhhhhhHHHHHH-----------------------hhhhhcCCeeeeeccccceEec
Confidence            999 999998888875  45555555555555544                       9999999999999999999986


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       485 --------------------------------------------------------------------------------  484 (683)
T KOG0696|consen  485 --------------------------------------------------------------------------------  484 (683)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcce---eccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ..+.+||+|||+|.-   ......+.+|||.|+|||++...+|+.++|+||+|++||||+.|++|
T Consensus       485 ---------------~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa~GVLLyEmlaGQpP  549 (683)
T KOG0696|consen  485 ---------------SEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQPP  549 (683)
T ss_pred             ---------------cCCceEeeecccccccccCCcceeeecCCCcccccceEEecccccchhHHHHHHHHHHHHcCCCC
Confidence                           467899999999974   33344678999999999999999999999999999999999999999


Q ss_pred             ccccCCCceee
Q psy2006         314 MARKTKTKYFY  324 (351)
Q Consensus       314 f~~~~~~~~~~  324 (351)
                      |++.+.+++|.
T Consensus       550 FdGeDE~elF~  560 (683)
T KOG0696|consen  550 FDGEDEDELFQ  560 (683)
T ss_pred             CCCCCHHHHHH
Confidence            99999999874

>KOG0608|consensus

Probab=99.97  E-value=1.2e-31  Score=253.74  Aligned_cols=233  Identities=19%  Similarity=0.291  Sum_probs=169.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      |+.||.|+||+|++++--.+...||+|.+.+..    ....++..|..||......-      ||+||-.|.+.+.+|+|
T Consensus       634 ik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~W------VVrLyySFQDkdnLYFV  707 (1034)
T KOG0608|consen  634 IKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEW------VVRLYYSFQDKDNLYFV  707 (1034)
T ss_pred             EeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcc------eEEEEEEeccCCceEEE
Confidence            467999999999999977789999999997643    33456778999998876444      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC---
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD---  152 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n---  152 (351)
                      |+|+ ||++..+|.+.+  -|+|+.++-++..|.-|                       +++.|..|++|||||++|   
T Consensus       708 MdYIPGGDmMSLLIrmg--IFeE~LARFYIAEltcA-----------------------iesVHkmGFIHRDiKPDNILI  762 (1034)
T KOG0608|consen  708 MDYIPGGDMMSLLIRMG--IFEEDLARFYIAELTCA-----------------------IESVHKMGFIHRDIKPDNILI  762 (1034)
T ss_pred             EeccCCccHHHHHHHhc--cCHHHHHHHHHHHHHHH-----------------------HHHHHhccceecccCccceEE
Confidence            9999 999999999886  35666666655555555                       999999999999999877   


Q ss_pred             -----eEEeecCCcccCCCCccc-ccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         153 -----IRLIDFGSATFDDEHHST-IVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       153 -----i~l~Dfg~s~~~~~~~~~-~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                           |||.|||+|.-....+.. +.+...                                                  
T Consensus       763 DrdGHIKLTDFGLCTGfRWTHdskYYq~gd--------------------------------------------------  792 (1034)
T KOG0608|consen  763 DRDGHIKLTDFGLCTGFRWTHDSKYYQEGD--------------------------------------------------  792 (1034)
T ss_pred             ccCCceeeeeccccccceeccccccccCCC--------------------------------------------------
Confidence                 599999999765444331 111000                                                  


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcce-eccccccccccceeeCceeeecCCCCCccceeeeeeeeE
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF-DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~  305 (351)
                      ..|...       .++-+...   .....+|+..+.-.+. ......+.+||+.|+|||++...+++...|+||+|++||
T Consensus       793 H~RqDS-------mep~~e~~---d~~~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~  862 (1034)
T KOG0608|consen  793 HHRQDS-------MEPSPEWA---DISKCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILY  862 (1034)
T ss_pred             cccccc-------CCCchhhc---cccccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHH
Confidence            000000       00000000   0111233332221111 222345789999999999999999999999999999999


Q ss_pred             eeccccccccccCCCceee
Q psy2006         306 ELYLGITLMARKTKTKYFY  324 (351)
Q Consensus       306 ~l~tG~~pf~~~~~~~~~~  324 (351)
                      +|+.|++||...+..+.-+
T Consensus       863 em~~g~~pf~~~tp~~tq~  881 (1034)
T KOG0608|consen  863 EMLVGQPPFLADTPGETQY  881 (1034)
T ss_pred             HHhhCCCCccCCCCCccee
Confidence            9999999999998777654

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.97  E-value=2.9e-31  Score=250.66  Aligned_cols=190  Identities=22%  Similarity=0.407  Sum_probs=159.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~   72 (351)
                      +.||+|+||.||+|.+..+++.||+|++...   ......+.+|+.+++.++|+|      |++++++|....      +
T Consensus        23 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~~~~~   96 (355)
T cd07874          23 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN------IISLLNVFTPQKSLEEFQD   96 (355)
T ss_pred             EEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCc------hhceeeeeeccccccccce
Confidence            6799999999999999899999999999753   233456778999999999888      999999987543      6


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      .|+||||++++|.+.+..    .+++..++.++.|++.|                       |+|||++|++|||+|++|
T Consensus        97 ~~lv~e~~~~~l~~~~~~----~l~~~~~~~~~~qi~~a-----------------------L~~LH~~givHrDikp~N  149 (355)
T cd07874          97 VYLVMELMDANLCQVIQM----ELDHERMSYLLYQMLCG-----------------------IKHLHSAGIIHRDLKPSN  149 (355)
T ss_pred             eEEEhhhhcccHHHHHhh----cCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCChHH
Confidence            899999998888887754    36777777777777777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       150 ill~----------------------------------------------------------------------------  153 (355)
T cd07874         150 IVVK----------------------------------------------------------------------------  153 (355)
T ss_pred             EEEC----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                         ..+.+||+|||++.....  ......||+.|+|||++.+..++.++|+||+||++|+|++|
T Consensus       154 -------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g  214 (355)
T cd07874         154 -------------------SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRH  214 (355)
T ss_pred             -------------------CCCCEEEeeCcccccCCCccccCCccccCCccCHHHHcCCCCCchhhHHHHHHHHHHHHhC
Confidence                               235689999999875332  22446789999999999988999999999999999999999


Q ss_pred             cccccccCC
Q psy2006         311 ITLMARKTK  319 (351)
Q Consensus       311 ~~pf~~~~~  319 (351)
                      ..||.+.+.
T Consensus       215 ~~pf~~~~~  223 (355)
T cd07874         215 KILFPGRDY  223 (355)
T ss_pred             CCCCCCCCH
Confidence            999987653

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.97  E-value=3.3e-31  Score=260.34  Aligned_cols=198  Identities=18%  Similarity=0.192  Sum_probs=164.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-------   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-------   71 (351)
                      +.||+|+||+||+|.+..+++.||||++...   ......+.+|+.++..+.|.+      |+++.+.|...+       
T Consensus        38 ~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~------iv~~~~~~~~~~~~~~~~~  111 (496)
T PTZ00283         38 RVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFS------IVKCHEDFAKKDPRNPENV  111 (496)
T ss_pred             EEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCc------EEEeecceecccccCcccc
Confidence            5799999999999999999999999999653   233456778999999998777      999988876443       


Q ss_pred             -eEEEEEecc-CCCHHHHHHhcC--CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccc
Q psy2006          72 -HMCIAFEIL-GLSVFDFLKENN--YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRR  147 (351)
Q Consensus        72 -~~~lV~E~~-g~sL~~~l~~~~--~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d  147 (351)
                       .+++||||+ +|+|.++++...  ...+++..+..++.|++.+                       |+|+|+++++|||
T Consensus       112 ~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~a-----------------------L~~lH~~~IiHrD  168 (496)
T PTZ00283        112 LMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLA-----------------------VHHVHSKHMIHRD  168 (496)
T ss_pred             eEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEecCC
Confidence             478999999 899999997542  2357777777777777777                       9999999999999


Q ss_pred             cCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         148 VRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       148 ~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +|+.||.+.                                                                       
T Consensus       169 LKP~NILl~-----------------------------------------------------------------------  177 (496)
T PTZ00283        169 IKSANILLC-----------------------------------------------------------------------  177 (496)
T ss_pred             CCHHHEEEe-----------------------------------------------------------------------
Confidence            999999887                                                                       


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGC  302 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  302 (351)
                                              ....+||+|||++.....     ......||+.|+|||++.+..++.++|+|||||
T Consensus       178 ------------------------~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~s~k~DVwSlGv  233 (496)
T PTZ00283        178 ------------------------SNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYYVAPEIWRRKPYSKKADMFSLGV  233 (496)
T ss_pred             ------------------------CCCCEEEEecccCeeccccccccccccccCCcceeCHHHhCCCCCCcHHHHHHHHH
Confidence                                    235699999999865322     223467999999999999889999999999999


Q ss_pred             eeEeeccccccccccCCCcee
Q psy2006         303 IIFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~~~~~~  323 (351)
                      ++|+|++|..||.+.+..+++
T Consensus       234 ilyeLltG~~Pf~~~~~~~~~  254 (496)
T PTZ00283        234 LLYELLTLKRPFDGENMEEVM  254 (496)
T ss_pred             HHHHHHHCCCCCCCCCHHHHH
Confidence            999999999999887655543

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.97  E-value=3.6e-30  Score=231.43  Aligned_cols=197  Identities=22%  Similarity=0.278  Sum_probs=167.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||.|+||.||++.+..+++.||+|.+...  ....+...+|+.+++.++|+|      |+++++.|...+++|+||||
T Consensus         6 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~   79 (255)
T cd08219           6 RVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPN------IVAFKESFEADGHLYIVMEY   79 (255)
T ss_pred             EEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCC------cceEEEEEEECCEEEEEEee
Confidence            6899999999999999999999999998642  334466788999999999887      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++.......+++..+..++.|++.+                       +.+||+.|++|+|+++.|+.+.+ 
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~a-----------------------l~~lH~~~i~H~dl~p~nili~~-  135 (255)
T cd08219          80 CDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLG-----------------------VQHIHEKRVLHRDIKSKNIFLTQ-  135 (255)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHhhCCcccCCCCcceEEECC-
Confidence            9 8899999877654567888888888888888                       99999999999999999998762 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (255)
T cd08219         136 --------------------------------------------------------------------------------  135 (255)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                    ...++++|||.+.....   ......|++.|+|||++.+..++.++|+||+|+++|++++|..||.
T Consensus       136 --------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Dv~slG~i~~~l~~g~~p~~  201 (255)
T cd08219         136 --------------NGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNKSDIWSLGCILYELCTLKHPFQ  201 (255)
T ss_pred             --------------CCcEEEcccCcceeecccccccccccCCccccCHHHHccCCcCchhhhhhhchhheehhhccCCCC
Confidence                          34689999998865322   1234568889999999988889999999999999999999999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      ..+....
T Consensus       202 ~~~~~~~  208 (255)
T cd08219         202 ANSWKNL  208 (255)
T ss_pred             CCCHHHH
Confidence            7664443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=4e-31  Score=253.03  Aligned_cols=188  Identities=20%  Similarity=0.294  Sum_probs=159.9

Q ss_pred             ccccCcccceEEEEEEe--ecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVY--EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~--~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||.|+||.||+|...  .+++.||+|.+...    ....+|+++|+.++|+|      |++++++|....+.|+|||+
T Consensus        98 ~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~----~~~~~E~~il~~l~h~~------iv~~~~~~~~~~~~~lv~e~  167 (392)
T PHA03207         98 SSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG----KTPGREIDILKTISHRA------IINLIHAYRWKSTVCMVMPK  167 (392)
T ss_pred             EeecCCCCeEEEEEEEcCCccceeEEEEecccc----ccHHHHHHHHHhcCCCC------ccceeeeEeeCCEEEEEehh
Confidence            67999999999999754  35688999998753    34567999999999888      99999999999999999999


Q ss_pred             cCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          80 LGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        80 ~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                      ++++|.+++...  ..+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.   
T Consensus       168 ~~~~l~~~l~~~--~~l~~~~~~~i~~ql~~a-----------------------L~~LH~~givHrDlkp~Nill~---  219 (392)
T PHA03207        168 YKCDLFTYVDRS--GPLPLEQAITIQRRLLEA-----------------------LAYLHGRGIIHRDVKTENIFLD---  219 (392)
T ss_pred             cCCCHHHHHHhc--CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCCHHHEEEc---
Confidence            999999999544  367888888888888888                       9999999999999999999876   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       220 --------------------------------------------------------------------------------  219 (392)
T PHA03207        220 --------------------------------------------------------------------------------  219 (392)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                  ....++|+|||++.....     ......||+.|+|||++.+..++.++|+||+||++|+|++|..||
T Consensus       220 ------------~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf  287 (392)
T PHA03207        220 ------------EPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKTDIWSAGLVLFEMSVKNVTL  287 (392)
T ss_pred             ------------CCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence                        235689999998864321     122457899999999999889999999999999999999999999


Q ss_pred             cccCC
Q psy2006         315 ARKTK  319 (351)
Q Consensus       315 ~~~~~  319 (351)
                      .+...
T Consensus       288 ~~~~~  292 (392)
T PHA03207        288 FGKQV  292 (392)
T ss_pred             CCCCC
Confidence            87653

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.97  E-value=6.9e-31  Score=243.75  Aligned_cols=197  Identities=21%  Similarity=0.358  Sum_probs=155.6

Q ss_pred             ccccCcccceEEEEEEee--cCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee--CCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYE--VDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY--HGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~--~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~--~~~~~lV~   77 (351)
                      ++||+|+||+||+|.++.  +++.||+|.+.... ....+.+|+++++.++|+|      |++++++|..  +.++|+||
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~-~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~~~lv~   79 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG-ISMSACREIALLRELKHPN------VIALQKVFLSHSDRKVWLLF   79 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC-CcHHHHHHHHHHHhCCCCC------eeeEEEEEeccCCCeEEEEE
Confidence            479999999999999653  66899999997532 2345678999999999888      9999999854  45899999


Q ss_pred             eccCCCHHHHHHhcC-------CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          78 EILGLSVFDFLKENN-------YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        78 E~~g~sL~~~l~~~~-------~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      ||++++|.+++....       ...+++..++.++.|++.|                       |.|||+++++|||+|+
T Consensus        80 e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~a-----------------------L~~lH~~~ivH~Dlkp  136 (317)
T cd07867          80 DYAEHDLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDG-----------------------IHYLHANWVLHRDLKP  136 (317)
T ss_pred             eeeCCcHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEEcCCCCH
Confidence            999889999886431       1235666666666666666                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .|+.+.+-+                                                                       
T Consensus       137 ~Nil~~~~~-----------------------------------------------------------------------  145 (317)
T cd07867         137 ANILVMGEG-----------------------------------------------------------------------  145 (317)
T ss_pred             HHEEEccCC-----------------------------------------------------------------------
Confidence            999875100                                                                       


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecC-CCCCccceeeeeee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCI  303 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~  303 (351)
                                          .....+||+|||++.....      ......||+.|+|||.+.+. .++.++|+||+||+
T Consensus       146 --------------------~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~i  205 (317)
T cd07867         146 --------------------PERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCI  205 (317)
T ss_pred             --------------------CCCCcEEEeeccceeccCCCcccccccCcceecccccCcHHhcCCCccCcHHHHHhHHHH
Confidence                                0235689999999875322      12345778999999998764 57899999999999


Q ss_pred             eEeeccccccccccCC
Q psy2006         304 IFELYLGITLMARKTK  319 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~  319 (351)
                      +|+++||.+||.....
T Consensus       206 l~el~tg~~~f~~~~~  221 (317)
T cd07867         206 FAELLTSEPIFHCRQE  221 (317)
T ss_pred             HHHHHhCCCCcccccc
Confidence            9999999999976543

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.97  E-value=8.9e-31  Score=236.72  Aligned_cols=198  Identities=19%  Similarity=0.219  Sum_probs=167.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||.||+|.+..+++.||+|++.......+.+.+|+++++.+.|++      |+++++++...+.+++||||+ 
T Consensus        12 ~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~~   85 (263)
T cd05052          12 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN------LVQLLGVCTREPPFYIITEFMT   85 (263)
T ss_pred             eecCCcccceEEEEEEecCCceEEEEEecCCchHHHHHHHHHHHHHhCCCCC------hhheEEEEcCCCCcEEEEEeCC
Confidence            5799999999999999999999999999865444567889999999999877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.......+++..+..++.|++.+                       |.|||+++++|+|+++.|+.+.+   
T Consensus        86 ~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~-----------------------l~~lH~~~i~H~dlkp~nil~~~---  139 (263)
T cd05052          86 YGNLLDYLRECNRQEVNAVVLLYMATQISSA-----------------------MEYLEKKNFIHRDLAARNCLVGE---  139 (263)
T ss_pred             CCcHHHHHHhCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEeecccCcceEEEcC---
Confidence            8999999987654567788888888888888                       99999999999999999998862   


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (263)
T cd05052         140 --------------------------------------------------------------------------------  139 (263)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                  ...++|+|||.+.......    ....+++.|+|||.+.+..++.++|+|||||++|+|++ |..||.
T Consensus       140 ------------~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~t~g~~p~~  207 (263)
T cd05052         140 ------------NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP  207 (263)
T ss_pred             ------------CCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCCCCchhHHHHHHHHHHHHHcCCCCCCC
Confidence                        3468999999886533211    12233567999999988889999999999999999998 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+.+
T Consensus       208 ~~~~~~~~  215 (263)
T cd05052         208 GIDLSQVY  215 (263)
T ss_pred             CCCHHHHH
Confidence            87665543

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.97  E-value=1e-30  Score=248.62  Aligned_cols=219  Identities=21%  Similarity=0.270  Sum_probs=161.5

Q ss_pred             ccccCcccceEEEEEEeec-----CcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEV-----DSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~-----~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||+|+||.||+|++...     ++.||+|++...  ....+.+.+|+++++.+ .|+|      |+++++++...++.
T Consensus        44 ~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~n------Iv~~~~~~~~~~~~  117 (374)
T cd05106          44 KTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKN------IVNLLGACTHGGPV  117 (374)
T ss_pred             heecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCc------eeeEeeEecCCCCe
Confidence            6799999999999997543     358999999753  23345678899999999 6777      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHH-----------HHHHHH--------------------HH-------------
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQ-----------VRHMSY--------------------QL-------------  108 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~-----------~~~~~~--------------------ql-------------  108 (351)
                      |+||||| +|+|.+++............           ......                    ++             
T Consensus       118 ~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (374)
T cd05106         118 LVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDS  197 (374)
T ss_pred             EEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCccccccccccc
Confidence            9999999 99999999764210000000           000000                    00             


Q ss_pred             H-HhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCC
Q psy2006         109 I-YAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD  187 (351)
Q Consensus       109 ~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~  187 (351)
                      . .........+++..+..++.|++.||.|||++|++|||+|+.|+.+.+                              
T Consensus       198 ~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~------------------------------  247 (374)
T cd05106         198 KDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTD------------------------------  247 (374)
T ss_pred             cchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeC------------------------------
Confidence            0 000011124677788888888888899999999999999999998862                              


Q ss_pred             hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCccee
Q psy2006         188 DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD  267 (351)
Q Consensus       188 ~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~  267 (351)
                                                                                       ...++|+|||++...
T Consensus       248 -----------------------------------------------------------------~~~~kL~DfGla~~~  262 (374)
T cd05106         248 -----------------------------------------------------------------GRVAKICDFGLARDI  262 (374)
T ss_pred             -----------------------------------------------------------------CCeEEEeeceeeeec
Confidence                                                                             245899999988643


Q ss_pred             cccc-----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccCCCc
Q psy2006         268 DEHH-----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKTKTK  321 (351)
Q Consensus       268 ~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~  321 (351)
                      ....     ....+++.|+|||++.+..++.++|+|||||++|++++ |..||......+
T Consensus       263 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt~G~~Pf~~~~~~~  322 (374)
T cd05106         263 MNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGKSPYPGILVNS  322 (374)
T ss_pred             cCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHHHHHhCCCCCCccccccH
Confidence            2211     12234567999999988889999999999999999997 999998765543

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>PHA02988 hypothetical protein; Provisional

Probab=99.97  E-value=9.1e-31  Score=239.70  Aligned_cols=194  Identities=12%  Similarity=0.191  Sum_probs=162.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhh----hHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee----CCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKY----REAARLEINALQKIGEKDPNGRHLCVKMLDWFDY----HGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~----~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~----~~~~   73 (351)
                      ..||+|+++.||+|.  .+++.||+|++......    .+.+.+|+.+|+++.|+|      |+++++++..    ...+
T Consensus        26 ~~i~~g~~~~v~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------Iv~~~g~~~~~~~~~~~~   97 (283)
T PHA02988         26 VLIKENDQNSIYKGI--FNNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNN------ILKIYGFIIDIVDDLPRL   97 (283)
T ss_pred             eEEeeCCceEEEEEE--ECCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCC------EEEEeeeEEecccCCCce
Confidence            358999999999999  48999999999764322    355679999999999887      9999999977    3489


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRC  151 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~  151 (351)
                      ++||||+ +|+|.+++....  .+++.....++.|++.|                       +.|||+. +++|||+|+.
T Consensus        98 ~lv~Ey~~~g~L~~~l~~~~--~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~~~~Hrdlkp~  152 (283)
T PHA02988         98 SLILEYCTRGYLREVLDKEK--DLSFKTKLDMAIDCCKG-----------------------LYNLYKYTNKPYKNLTSV  152 (283)
T ss_pred             EEEEEeCCCCcHHHHHhhCC--CCChhHHHHHHHHHHHH-----------------------HHHHHhcCCCCCCcCChh
Confidence            9999999 899999998754  56777777777777777                       9999984 8999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.+                                                                          
T Consensus       153 nill~~--------------------------------------------------------------------------  158 (283)
T PHA02988        153 SFLVTE--------------------------------------------------------------------------  158 (283)
T ss_pred             hEEECC--------------------------------------------------------------------------
Confidence            998872                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec--CCCCCccceeeeeeeeEeecc
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE--LGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DiwslG~~l~~l~t  309 (351)
                                           .+.+||+|||++...........|++.|+|||.+.+  ..++.++|+|||||++|++++
T Consensus       159 ---------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~k~Di~SlGvil~el~~  217 (283)
T PHA02988        159 ---------------------NYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEYTIKDDIYSLGVVLWEIFT  217 (283)
T ss_pred             ---------------------CCcEEEcccchHhhhccccccccCcccccCHHHhhhccccccchhhhhHHHHHHHHHHH
Confidence                                 356899999998764444445678899999999976  678999999999999999999


Q ss_pred             ccccccccCCCcee
Q psy2006         310 GITLMARKTKTKYF  323 (351)
Q Consensus       310 G~~pf~~~~~~~~~  323 (351)
                      |..||.+.+..+++
T Consensus       218 g~~Pf~~~~~~~~~  231 (283)
T PHA02988        218 GKIPFENLTTKEIY  231 (283)
T ss_pred             CCCCCCCCCHHHHH
Confidence            99999987765544

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.97  E-value=1e-30  Score=241.07  Aligned_cols=196  Identities=23%  Similarity=0.376  Sum_probs=163.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||.|+||.||+|.+..+++.||+|.+....  .......+|+.+++.++|+|      |+++++++...+..|+|||
T Consensus        11 ~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n------I~~~~~~~~~~~~~~lv~e   84 (301)
T cd07873          11 LDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN------IVTLHDIIHTEKSLTLVFE   84 (301)
T ss_pred             eeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCC------cceEEEEEecCCeEEEEEe
Confidence            367999999999999998899999999997432  22345678999999999888      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |++++|.+++.... ..+++..++.++.|++.|                       |.|||+.+++|+|++++|+.+.  
T Consensus        85 ~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~a-----------------------L~~lH~~~i~H~dlkp~Nil~~--  138 (301)
T cd07873          85 YLDKDLKQYLDDCG-NSINMHNVKLFLFQLLRG-----------------------LNYCHRRKVLHRDLKPQNLLIN--  138 (301)
T ss_pred             ccccCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeCCCCCHHHEEEC--
Confidence            99889999987754 357788888888888888                       9999999999999999999876  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (301)
T cd07873         139 --------------------------------------------------------------------------------  138 (301)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                   ....++|+|||++.....   ......+++.|+|||.+.+. .++.++|+||+||++|+|++|.+||
T Consensus       139 -------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~tg~~~f  205 (301)
T cd07873         139 -------------ERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMSTGRPLF  205 (301)
T ss_pred             -------------CCCcEEECcCcchhccCCCCCcccccceeecccCcHHHhCCCCCccHHHHHHHHHHHHHHHhCCCCC
Confidence                         234689999998865322   22334568899999988764 4688999999999999999999999


Q ss_pred             cccCCCc
Q psy2006         315 ARKTKTK  321 (351)
Q Consensus       315 ~~~~~~~  321 (351)
                      .+.+..+
T Consensus       206 ~~~~~~~  212 (301)
T cd07873         206 PGSTVEE  212 (301)
T ss_pred             CCCCHHH
Confidence            8776543

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>KOG0614|consensus

Probab=99.97  E-value=1.2e-32  Score=254.95  Aligned_cols=196  Identities=23%  Similarity=0.310  Sum_probs=170.7

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      -||.|+||.|=++........+|+|++++.    ....+++..|-+||...+++.      ||+||-.|.++..+|++||
T Consensus       427 TLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~f------IvrLYrTfrd~kyvYmLmE  500 (732)
T KOG0614|consen  427 TLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDF------IVRLYRTFRDSKYVYMLME  500 (732)
T ss_pred             hcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchH------HHHHHHHhccchhhhhhHH
Confidence            489999999999987655667999999864    355678899999999998666      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      .| ||.|...++..+  .|.+..++-++.-+++|                       ++|||++||+.||+||.|+.|. 
T Consensus       501 aClGGElWTiLrdRg--~Fdd~tarF~~acv~EA-----------------------feYLH~k~iIYRDLKPENllLd-  554 (732)
T KOG0614|consen  501 ACLGGELWTILRDRG--SFDDYTARFYVACVLEA-----------------------FEYLHRKGIIYRDLKPENLLLD-  554 (732)
T ss_pred             hhcCchhhhhhhhcC--CcccchhhhhHHHHHHH-----------------------HHHHHhcCceeccCChhheeec-
Confidence            99 999999999887  45555555555555555                       9999999999999999999887 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       555 --------------------------------------------------------------------------------  554 (732)
T KOG0614|consen  555 --------------------------------------------------------------------------------  554 (732)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                    ..+.+||.|||++...  +....+++|||.|.|||+++..+...++|.||||+++|||++|.+||.
T Consensus       555 --------------~~Gy~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWaLGIli~ELL~G~pPFs  620 (732)
T KOG0614|consen  555 --------------NRGYLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWALGILIYELLTGSPPFS  620 (732)
T ss_pred             --------------cCCceEEeehhhHHHhccCCceeeecCCcccccchhhhccCcchhhHHHHHHHHHHHHHcCCCCCC
Confidence                          3578999999999874  445578999999999999999999999999999999999999999999


Q ss_pred             ccCCCceee
Q psy2006         316 RKTKTKYFY  324 (351)
Q Consensus       316 ~~~~~~~~~  324 (351)
                      +-+.+++|.
T Consensus       621 ~~dpmktYn  629 (732)
T KOG0614|consen  621 GVDPMKTYN  629 (732)
T ss_pred             CCchHHHHH
Confidence            999999884

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.97  E-value=2.5e-30  Score=233.22  Aligned_cols=198  Identities=20%  Similarity=0.236  Sum_probs=165.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +++||+|+||+||+|.+ .++..||+|.+.......+.+.+|+.+++.++|++      |+++++.+...+..++||||+
T Consensus        11 ~~~lg~g~~g~v~~~~~-~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~   83 (261)
T cd05072          11 VKKLGAGQFGEVWMGYY-NNSTKVAVKTLKPGTMSVQAFLEEANLMKTLQHDK------LVRLYAVVTKEEPIYIITEYM   83 (261)
T ss_pred             eeecCCcCCceEEEEEe-cCCceEEEEEccCCchhHHHHHHHHHHHHhCCCCC------eeeEEEEEcCCCCcEEEEecC
Confidence            47899999999999996 56778999998765445567889999999999887      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++++.....+++..+..++.|++.+                       |+|||+.+++|+|+++.|+.+.   
T Consensus        84 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~-----------------------l~~LH~~~i~H~dl~p~nili~---  137 (261)
T cd05072          84 AKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEG-----------------------MAYIERKNYIHRDLRAANVLVS---  137 (261)
T ss_pred             CCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccccchhhEEec---
Confidence             8999999987655567777777888888877                       9999999999999999999886   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (261)
T cd05072         138 --------------------------------------------------------------------------------  137 (261)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLM  314 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf  314 (351)
                                  ....++|+|||.+.......    ....++..|+|||.+.+..++.++|+|||||++|++++ |..||
T Consensus       138 ------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~  205 (261)
T cd05072         138 ------------ESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLYEIVTYGKIPY  205 (261)
T ss_pred             ------------CCCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCCCChhhhhhhhHHHHHHHHccCCCCC
Confidence                        23468999999986533211    22345568999999988888999999999999999998 99999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      ...+..+..
T Consensus       206 ~~~~~~~~~  214 (261)
T cd05072         206 PGMSNSDVM  214 (261)
T ss_pred             CCCCHHHHH
Confidence            877655543

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>KOG0194|consensus

Probab=99.97  E-value=6.1e-30  Score=242.96  Aligned_cols=196  Identities=17%  Similarity=0.222  Sum_probs=157.6

Q ss_pred             ccccCcccceEEEEEEeecCc---E-EEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS---V-VALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~---~-vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      ++||+|+||.||+|..+..+.   . ||+|..+.+    ......+..|+++|+.++|+|      ||+++++.....=+
T Consensus       163 kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~N------VVr~yGVa~~~~Pl  236 (474)
T KOG0194|consen  163 KKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPN------VVRFYGVAVLEEPL  236 (474)
T ss_pred             ceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCC------EEEEEEEEcCCCcc
Confidence            589999999999999876422   3 899999842    345667889999999999988      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +||||+| ||+|.++|+..+. .++...-..++.+.+.|                       ++|||+++++|||+-.-|
T Consensus       237 ~ivmEl~~gGsL~~~L~k~~~-~v~~~ek~~~~~~AA~G-----------------------l~YLh~k~~IHRDIAARN  292 (474)
T KOG0194|consen  237 MLVMELCNGGSLDDYLKKNKK-SLPTLEKLRFCYDAARG-----------------------LEYLHSKNCIHRDIAARN  292 (474)
T ss_pred             EEEEEecCCCcHHHHHHhCCC-CCCHHHHHHHHHHHHhH-----------------------HHHHHHCCCcchhHhHHH
Confidence            9999999 9999999999863 35555555555555554                       999999999999998888


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.++                                                                            
T Consensus       293 cL~~----------------------------------------------------------------------------  296 (474)
T KOG0194|consen  293 CLYS----------------------------------------------------------------------------  296 (474)
T ss_pred             heec----------------------------------------------------------------------------
Confidence            7766                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecccc-c--cccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-S--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-~--~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                         ....+||+|||++....... .  ...-...|+|||++...-|+.++|||||||++||+.+
T Consensus       297 -------------------~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV~sfGV~~~Eif~  357 (474)
T KOG0194|consen  297 -------------------KKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDVWSFGVLLWEIFE  357 (474)
T ss_pred             -------------------CCCeEEeCccccccCCcceeeccccccCcceecChhhhccCccccccchhheeeeEEeeec
Confidence                               12347999999986543111 1  1123468999999999999999999999999999998


Q ss_pred             -ccccccccCCCce
Q psy2006         310 -GITLMARKTKTKY  322 (351)
Q Consensus       310 -G~~pf~~~~~~~~  322 (351)
                       |..||.+.+..++
T Consensus       358 ~g~~Py~g~~~~~v  371 (474)
T KOG0194|consen  358 NGAEPYPGMKNYEV  371 (474)
T ss_pred             cCCCCCCCCCHHHH
Confidence             8999999885544

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.97  E-value=1.7e-30  Score=235.38  Aligned_cols=195  Identities=16%  Similarity=0.175  Sum_probs=159.2

Q ss_pred             ccccCcccceEEEEEEe---ecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVY---EVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||.||+|.+.   ..+..||+|.++...  .....+.+|+.+++.++|+|      |+++++++..+++.|+|
T Consensus        11 ~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~lv   84 (266)
T cd05064          11 RILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSN------IVRLEGVITRGNTMMIV   84 (266)
T ss_pred             eeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCC------cCeEEEEEecCCCcEEE
Confidence            57999999999999875   356799999997542  33456788999999998877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.... ..+++..+..++.|++.|                       |+|||+++++|||+|+.|+.+
T Consensus        85 ~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~i~~a-----------------------l~~lH~~~iiH~dikp~nili  140 (266)
T cd05064          85 TEYMSNGALDSFLRKHE-GQLVAGQLMGMLPGLASG-----------------------MKYLSEMGYVHKGLAAHKVLV  140 (266)
T ss_pred             EEeCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeeccccHhhEEE
Confidence            9999 889999988754 357888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       141 ~~------------------------------------------------------------------------------  142 (266)
T cd05064         141 NS------------------------------------------------------------------------------  142 (266)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            62                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecCCCCCccceeeeeeeeEeec-cc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY-LG  310 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~-tG  310 (351)
                                       ...++++|||........    .....++..|+|||.+.+..++.++|+||+||++|+++ +|
T Consensus       143 -----------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g  205 (266)
T cd05064         143 -----------------DLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSSASDVWSFGIVMWEVMSYG  205 (266)
T ss_pred             -----------------CCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCCccchhHHHHHHHHHHHHhcCC
Confidence                             345788888876442111    11233457899999998889999999999999999966 59


Q ss_pred             cccccccCCCc
Q psy2006         311 ITLMARKTKTK  321 (351)
Q Consensus       311 ~~pf~~~~~~~  321 (351)
                      ..||...+..+
T Consensus       206 ~~p~~~~~~~~  216 (266)
T cd05064         206 ERPYWDMSGQD  216 (266)
T ss_pred             CCCcCcCCHHH
Confidence            99998776554

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.97  E-value=3.1e-30  Score=238.92  Aligned_cols=195  Identities=21%  Similarity=0.285  Sum_probs=165.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||+|+||.||++.+..+++.+|+|.+...  ......+.+|++++++++|+|      |+++++.|..++++|+|||
T Consensus         6 ~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e   79 (308)
T cd06615           6 LGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPY------IVGFYGAFYSDGEISICME   79 (308)
T ss_pred             EeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCC------CCeEEEEEeeCCEEEEEee
Confidence            36799999999999999999999999998753  233456788999999999887      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeEEe
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIRLI  156 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~l~  156 (351)
                      |+ +++|.++++...  .+++..++.++.|++.+                       |.|||+ .+++|+|+++.|+.+.
T Consensus        80 y~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~~i~H~dl~p~nil~~  134 (308)
T cd06615          80 HMDGGSLDQVLKKAG--RIPENILGKISIAVLRG-----------------------LTYLREKHKIMHRDVKPSNILVN  134 (308)
T ss_pred             ccCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhhCCEEECCCChHHEEEe
Confidence            99 889999998764  57888888888888888                       999997 5899999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                                                                               
T Consensus       135 ~-------------------------------------------------------------------------------  135 (308)
T cd06615         135 S-------------------------------------------------------------------------------  135 (308)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                      ...++|+|||++.... .......|++.|+|||.+.+..++.++|+||+||+++++++|..||.
T Consensus       136 ----------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~DiwslG~~l~~l~~g~~p~~  199 (308)
T cd06615         136 ----------------RGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSDIWSLGLSLVEMAIGRYPIP  199 (308)
T ss_pred             ----------------CCcEEEccCCCcccccccccccCCCCcCccChhHhcCCCCCccchHHHHHHHHHHHHhCCCCCC
Confidence                            3458999999876432 22345678899999999888888999999999999999999999997


Q ss_pred             ccCCCc
Q psy2006         316 RKTKTK  321 (351)
Q Consensus       316 ~~~~~~  321 (351)
                      ..+...
T Consensus       200 ~~~~~~  205 (308)
T cd06615         200 PPDAKE  205 (308)
T ss_pred             Ccchhh
Confidence            665433

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.97  E-value=2.7e-30  Score=234.35  Aligned_cols=194  Identities=19%  Similarity=0.281  Sum_probs=162.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeC------CeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYH------GHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~------~~~~   74 (351)
                      ++||.|+||.||+|.+..+++.||+|++.........+.+|+.+++.+ .|+|      |++++++|...      .++|
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~~~~h~~------i~~~~~~~~~~~~~~~~~~~~   85 (272)
T cd06637          12 ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRN------IATYYGAFIKKNPPGMDDQLW   85 (272)
T ss_pred             HheeecCCeEEEEEEEcCCCcEEEEEEEEcCCccHHHHHHHHHHHHHhcCCCC------eeeEeeEEeecCCCCCCcEEE
Confidence            579999999999999999999999999976555556778899999998 4666      99999999753      4799


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++.......+++..+..++.|++.+                       +.|||+++++|+|+++.|+
T Consensus        86 iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~-----------------------l~~LH~~~ivh~dl~~~ni  142 (272)
T cd06637          86 LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRG-----------------------LSHLHQHKVIHRDIKGQNV  142 (272)
T ss_pred             EEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCccCCCCHHHE
Confidence            999999 7899999987655567888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       143 li~-----------------------------------------------------------------------------  145 (272)
T cd06637         143 LLT-----------------------------------------------------------------------------  145 (272)
T ss_pred             EEC-----------------------------------------------------------------------------
Confidence            886                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeee-----cCCCCCccceeeeeeeeE
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l~  305 (351)
                                        ....++|+|||++.....   ......|++.|+|||.+.     +..++.++|+||+||++|
T Consensus       146 ------------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGv~l~  207 (272)
T cd06637         146 ------------------ENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAI  207 (272)
T ss_pred             ------------------CCCCEEEccCCCceecccccccCCcccccccccCHhHhccccCcCCCCCchhhHHHHHHHHH
Confidence                              234689999999865321   223467889999999986     335788999999999999


Q ss_pred             eeccccccccccCC
Q psy2006         306 ELYLGITLMARKTK  319 (351)
Q Consensus       306 ~l~tG~~pf~~~~~  319 (351)
                      ++++|..||.....
T Consensus       208 el~~g~~p~~~~~~  221 (272)
T cd06637         208 EMAEGAPPLCDMHP  221 (272)
T ss_pred             HHHhCCCCccccCH
Confidence            99999999976543

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.97  E-value=4e-30  Score=234.60  Aligned_cols=188  Identities=21%  Similarity=0.218  Sum_probs=159.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||+|+||.||+|++..+++.||+|++...  ....+.+.+|+++++++.|++      |+++++.|...+..++|||
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e   79 (279)
T cd06619           6 QEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPY------IIGFYGAFFVENRISICTE   79 (279)
T ss_pred             eeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCC------eeeEEEEEEECCEEEEEEe
Confidence            36799999999999999999999999999653  233456788999999999887      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|..+      ..+++..+..++.|++.+                       ++|||+.|++|+|+++.|+.+. 
T Consensus        80 ~~~~~~l~~~------~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dlkp~Nill~-  129 (279)
T cd06619          80 FMDGGSLDVY------RKIPEHVLGRIAVAVVKG-----------------------LTYLWSLKILHRDVKPSNMLVN-  129 (279)
T ss_pred             cCCCCChHHh------hcCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeeCCCCHHHEEEC-
Confidence            99 7787643      245777777777777777                       9999999999999999999876 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (279)
T cd06619         130 --------------------------------------------------------------------------------  129 (279)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                    ....++|+|||++.... .......|++.|+|||.+.+..++.++|+||+||++|++++|..||..
T Consensus       130 --------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g~~pf~~  195 (279)
T cd06619         130 --------------TRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQYGIHSDVWSLGISFMELALGRFPYPQ  195 (279)
T ss_pred             --------------CCCCEEEeeCCcceecccccccCCCCChhhcCceeecCCCCCCcchHHHHHHHHHHHHhCCCCchh
Confidence                          23468999999886532 233456789999999999988899999999999999999999999976


Q ss_pred             cC
Q psy2006         317 KT  318 (351)
Q Consensus       317 ~~  318 (351)
                      ..
T Consensus       196 ~~  197 (279)
T cd06619         196 IQ  197 (279)
T ss_pred             hc
Confidence            43

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.97  E-value=3.3e-30  Score=236.46  Aligned_cols=193  Identities=23%  Similarity=0.320  Sum_probs=167.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||.|+||.||++.+..+++.||+|++....    ...+.+.+|+++++++.|+|      |+++++.+...++.|+||
T Consensus         7 ~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           7 KTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPF------LVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             EEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCC------ccceeeEEEcCCeEEEEE
Confidence            67999999999999999999999999997532    23456788999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..+..++.|++.+                       |.|||+.|++|+|+++.|+.+.
T Consensus        81 e~~~~~~L~~~~~~~~--~l~~~~~~~~~~qil~~-----------------------l~~lH~~~i~H~dl~p~nili~  135 (290)
T cd05580          81 EYVPGGELFSHLRKSG--RFPEPVARFYAAQVVLA-----------------------LEYLHSLDIVYRDLKPENLLLD  135 (290)
T ss_pred             ecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEecCCCCHHHEEEC
Confidence            999 999999998764  57888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                                                                               
T Consensus       136 ~-------------------------------------------------------------------------------  136 (290)
T cd05580         136 S-------------------------------------------------------------------------------  136 (290)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                      .+.++|+|||++...........+++.|+|||.+.+...+.++|+||||+++++|++|..||..
T Consensus       137 ----------------~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  200 (290)
T cd05580         137 ----------------DGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKGYGKAVDWWALGILIYEMLAGYPPFFD  200 (290)
T ss_pred             ----------------CCCEEEeeCCCccccCCCCCCCCCCccccChhhhcCCCCCccccHHHHHHHHHHHHhCCCCCCC
Confidence                            3468999999987654445556788999999999888889999999999999999999999987


Q ss_pred             cCCC
Q psy2006         317 KTKT  320 (351)
Q Consensus       317 ~~~~  320 (351)
                      .+..
T Consensus       201 ~~~~  204 (290)
T cd05580         201 DNPI  204 (290)
T ss_pred             CCHH
Confidence            6643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=1.6e-30  Score=245.88  Aligned_cols=185  Identities=21%  Similarity=0.297  Sum_probs=157.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      ++||+|+||.||+|.+..+++.||+|+...     .....|+.+++.++|+|      |++++++|...++.|+|||++.
T Consensus        72 ~~lg~G~~g~Vy~~~~~~~~~~valK~~~~-----~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e~~~  140 (357)
T PHA03209         72 KTLTPGSEGRVFVATKPGQPDPVVLKIGQK-----GTTLIEAMLLQNVNHPS------VIRMKDTLVSGAITCMVLPHYS  140 (357)
T ss_pred             EEecCCCCeEEEEEEECCCCceEEEEeCCc-----cccHHHHHHHHhCCCCC------CcChhheEEeCCeeEEEEEccC
Confidence            679999999999999988999999998654     23456999999999887      9999999999999999999998


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCc
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      ++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+.+    
T Consensus       141 ~~l~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivHrDlkp~Nill~~----  192 (357)
T PHA03209        141 SDLYTYLTKRS-RPLPIDQALIIEKQILEG-----------------------LRYLHAQRIIHRDVKTENIFIND----  192 (357)
T ss_pred             CcHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEEECC----
Confidence            89999987654 367888888888888888                       99999999999999999998762    


Q ss_pred             ccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhc
Q psy2006         162 TFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (351)
                                                                                                      
T Consensus       193 --------------------------------------------------------------------------------  192 (357)
T PHA03209        193 --------------------------------------------------------------------------------  192 (357)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc-ccccc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI-TLMAR  316 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~-~pf~~  316 (351)
                                 ...++|+|||.+.....  ......||+.|+|||++.+..++.++|+||+||++|+++++. ++|..
T Consensus       193 -----------~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvvl~ell~~~~~~f~~  259 (357)
T PHA03209        193 -----------VDQVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFED  259 (357)
T ss_pred             -----------CCCEEEecCccccccccCcccccccccccccCCeecCCCCCCchhhHHHHHHHHHHHHHcCCccccC
Confidence                       34689999999865322  223467899999999999989999999999999999999754 44443

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.96  E-value=1.8e-30  Score=265.26  Aligned_cols=214  Identities=18%  Similarity=0.234  Sum_probs=164.2

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~~l   75 (351)
                      +++||.|+||+||+|.+..+++.||+|++...   ......+..|+.+|+.|.|++      |++++++|...  ..+||
T Consensus        18 l~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPN------IVrl~d~f~de~~~~lyI   91 (1021)
T PTZ00266         18 IKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKN------IVRYIDRFLNKANQKLYI   91 (1021)
T ss_pred             EEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCC------cCeEEEEEEecCCCEEEE
Confidence            36799999999999999999999999999743   334566788999999999888      99999998654  47999


Q ss_pred             EEecc-CCCHHHHHHhcC--CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-------cccc
Q psy2006          76 AFEIL-GLSVFDFLKENN--YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-------KREV  145 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~--~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-------~i~h  145 (351)
                      ||||+ +++|.++|....  ...+++..++.++.||+.|                       |.|||+.       +|+|
T Consensus        92 VMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~A-----------------------LaYLHs~g~~~~~k~IVH  148 (1021)
T PTZ00266         92 LMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHA-----------------------LAYCHNLKDGPNGERVLH  148 (1021)
T ss_pred             EEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHH-----------------------HHHHHhcccccccCCcee
Confidence            99999 899999997642  2357888888888888888                       9999984       4999


Q ss_pred             cccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         146 RRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       146 ~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      |||||.||.|.+-+.. .......                                                        
T Consensus       149 RDLKPeNILL~s~~~~-lg~i~~~--------------------------------------------------------  171 (1021)
T PTZ00266        149 RDLKPQNIFLSTGIRH-IGKITAQ--------------------------------------------------------  171 (1021)
T ss_pred             ccCcHHHeEeecCccc-ccccccc--------------------------------------------------------
Confidence            9999999988631000 0000000                                                        


Q ss_pred             chhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeec--CCCCCccceeeee
Q psy2006         226 SSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILE--LGWAQPCDVWSIG  301 (351)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~--~~~~~~~DiwslG  301 (351)
                                           .........+||+|||++.....  ......||+.|+|||++.+  ..++.++||||||
T Consensus       172 ---------------------~~n~ng~~iVKLsDFGlAr~l~~~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG  230 (1021)
T PTZ00266        172 ---------------------ANNLNGRPIAKIGDFGLSKNIGIESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALG  230 (1021)
T ss_pred             ---------------------ccccCCCCceEEccCCccccccccccccccCCCccccCHHHHhccCCCCCchhHHHHHH
Confidence                                 00001234589999999865322  2244678999999999865  3478899999999


Q ss_pred             eeeEeeccccccccccCCCc
Q psy2006         302 CIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       302 ~~l~~l~tG~~pf~~~~~~~  321 (351)
                      |++|+|+||..||...+...
T Consensus       231 ~ILYELLTGk~PF~~~~~~~  250 (1021)
T PTZ00266        231 CIIYELCSGKTPFHKANNFS  250 (1021)
T ss_pred             HHHHHHHHCCCCCCcCCcHH
Confidence            99999999999998765443

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.96  E-value=2.8e-30  Score=238.54  Aligned_cols=215  Identities=16%  Similarity=0.190  Sum_probs=155.9

Q ss_pred             ccccCcccceEEEEEEee----------------cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeee
Q psy2006           2 CSLNCVASNHVCTNVVYE----------------VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKM   63 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~----------------~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l   63 (351)
                      ++||+|+||.||+|.+..                ++..||+|++...  ......+.+|+++|..++|+|      |+++
T Consensus        11 ~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~   84 (304)
T cd05096          11 EKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPN------IIRL   84 (304)
T ss_pred             eEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCC------eeEE
Confidence            679999999999998632                3457999999753  233456789999999999877      9999


Q ss_pred             eeeEeeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc
Q psy2006          64 LDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK  142 (351)
Q Consensus        64 ~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~  142 (351)
                      ++++...+..|+||||+ +++|.+++...............      .........++...+..++.|++.||.|||+.|
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~  158 (304)
T cd05096          85 LGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDA------VPPAHCLPAISYSSLLHVALQIASGMKYLSSLN  158 (304)
T ss_pred             EEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccc------cccccccccccHHHHHHHHHHHHHHHHHHHHCC
Confidence            99999999999999999 89999998764311100000000      000001112333444445555555599999999


Q ss_pred             ccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCC
Q psy2006         143 REVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFD  222 (351)
Q Consensus       143 i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~  222 (351)
                      ++|||+|+.|+.+.+                                                                 
T Consensus       159 ivH~dlkp~Nill~~-----------------------------------------------------------------  173 (304)
T cd05096         159 FVHRDLATRNCLVGE-----------------------------------------------------------------  173 (304)
T ss_pred             ccccCcchhheEEcC-----------------------------------------------------------------
Confidence            999999999998762                                                                 


Q ss_pred             CCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccce
Q psy2006         223 KLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDV  297 (351)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Di  297 (351)
                                                    ...+||+|||++......     .....++..|+|||.+.+..++.++|+
T Consensus       174 ------------------------------~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  223 (304)
T cd05096         174 ------------------------------NLTIKIADFGMSRNLYAGDYYRIQGRAVLPIRWMAWECILMGKFTTASDV  223 (304)
T ss_pred             ------------------------------CccEEECCCccceecccCceeEecCcCCCCccccCHHHHhcCCCCchhhh
Confidence                                          346899999988643211     123345678999999988889999999


Q ss_pred             eeeeeeeEeecc--ccccccccCCCcee
Q psy2006         298 WSIGCIIFELYL--GITLMARKTKTKYF  323 (351)
Q Consensus       298 wslG~~l~~l~t--G~~pf~~~~~~~~~  323 (351)
                      |||||++|++++  +..||...+..+.+
T Consensus       224 ~slG~~l~el~~~~~~~p~~~~~~~~~~  251 (304)
T cd05096         224 WAFGVTLWEILMLCKEQPYGELTDEQVI  251 (304)
T ss_pred             HHHHHHHHHHHHccCCCCCCcCCHHHHH
Confidence            999999999885  67888877655543

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.96  E-value=3.8e-30  Score=230.89  Aligned_cols=195  Identities=15%  Similarity=0.250  Sum_probs=161.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||+|+||+||+|++..+++.||+|.+...  ......+.+|+++++.++|+|      |+++++++......++||||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~   74 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPN------IVRLIGVCTQKQPIYIVMEL   74 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCC------cceEEEEEcCCCCeEEEEee
Confidence            5799999999999999999999999998643  233456889999999999887      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++.... ..+++..+..++.|++.+                       |.|||+++++|+|+++.|+.+.+ 
T Consensus        75 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~qi~~~-----------------------L~~lH~~~i~H~dl~p~nil~~~-  129 (252)
T cd05084          75 VQGGDFLTFLRTEG-PRLKVKELIQMVENAAAG-----------------------MEYLESKHCIHRDLAARNCLVTE-  129 (252)
T ss_pred             ccCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccccccchheEEEcC-
Confidence            9 889999987654 357788888888888888                       99999999999999999998761 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (252)
T cd05084         130 --------------------------------------------------------------------------------  129 (252)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceeccccc-----cccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHS-----TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GIT  312 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~  312 (351)
                                    ...++|+|||.+........     ....+..|+|||.+.+..++.++|+||+||++|++++ |..
T Consensus       130 --------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e~~~~~~~  195 (252)
T cd05084         130 --------------KNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYSSESDVWSFGILLWEAFSLGAV  195 (252)
T ss_pred             --------------CCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCChHHHHHHHHHHHHHHHhCCCC
Confidence                          34588999998754221111     1122356999999988888999999999999999997 999


Q ss_pred             cccccCCCc
Q psy2006         313 LMARKTKTK  321 (351)
Q Consensus       313 pf~~~~~~~  321 (351)
                      ||...+..+
T Consensus       196 p~~~~~~~~  204 (252)
T cd05084         196 PYANLSNQQ  204 (252)
T ss_pred             CccccCHHH
Confidence            997665543

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.96  E-value=3e-30  Score=240.95  Aligned_cols=195  Identities=14%  Similarity=0.083  Sum_probs=155.7

Q ss_pred             CccccCc--ccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           1 MCSLNCV--ASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         1 ~~~iG~G--~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +++||+|  +|++||++.++.+++.||+|.+...   ....+.+.+|+.+++.++|+|      |++++++|..++..|+
T Consensus         3 ~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpn------iv~~~~~~~~~~~~~l   76 (327)
T cd08227           3 LTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPN------IVPYRATFIADNELWV   76 (327)
T ss_pred             hhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCC------eeeEEEEEEECCEEEE
Confidence            4689999  7899999999999999999999753   233456778999999999888      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||+ +++|.+++.......+++..++.++.|++.|                       |+|||+++++|||+|+.|+.
T Consensus        77 v~e~~~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~-----------------------L~~LH~~~iiH~dlkp~Nil  133 (327)
T cd08227          77 VTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKA-----------------------LDYIHHMGYVHRSVKASHIL  133 (327)
T ss_pred             EEeccCCCcHHHHHHhhccCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEecCCCChhhEE
Confidence            99999 8999999976544457888888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.+-                                                                            
T Consensus       134 ~~~~----------------------------------------------------------------------------  137 (327)
T cd08227         134 ISVD----------------------------------------------------------------------------  137 (327)
T ss_pred             EecC----------------------------------------------------------------------------
Confidence            7631                                                                            


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCccee----------ccccccccccceeeCceeeec--CCCCCccceeeeee
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFD----------DEHHSTIVSTRHYRAPEVILE--LGWAQPCDVWSIGC  302 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~----------~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DiwslG~  302 (351)
                                         ..++++||+.....          ........++..|+|||.+.+  ..++.++|+||+||
T Consensus       138 -------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~  198 (327)
T cd08227         138 -------------------GKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGI  198 (327)
T ss_pred             -------------------CcEEEcccchhhccccccccccccccccccccceecccChHHhhcccCCCCchhhHHHHHH
Confidence                               23344444322110          000112345678999999976  45789999999999


Q ss_pred             eeEeeccccccccccCC
Q psy2006         303 IIFELYLGITLMARKTK  319 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~~  319 (351)
                      +++++++|..||.....
T Consensus       199 il~el~~g~~pf~~~~~  215 (327)
T cd08227         199 TACELANGHVPFKDMPA  215 (327)
T ss_pred             HHHHHHHCCCCCCCcch
Confidence            99999999999976543

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.96  E-value=5.9e-30  Score=234.96  Aligned_cols=196  Identities=22%  Similarity=0.294  Sum_probs=163.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +++||.|+||.||+|.+..+++.||+|++.... ...+.+.+|+.+++.+.|+|      |+++++.|..+++.|+||||
T Consensus        17 ~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~   90 (292)
T cd06644          17 IGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPY------IVKLLGAFYWDGKLWIMIEF   90 (292)
T ss_pred             hheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCc------EeeeEEEEEeCCeEEEEEec
Confidence            468999999999999999999999999997542 34566788999999999887      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|..++.+.. ..+++..+..++.|++.+                       +.|||+.+++|+|+++.|+.+.  
T Consensus        91 ~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~-----------------------l~~lH~~~i~H~dlkp~Nili~--  144 (292)
T cd06644          91 CPGGAVDAIMLELD-RGLTEPQIQVICRQMLEA-----------------------LQYLHSMKIIHRDLKAGNVLLT--  144 (292)
T ss_pred             CCCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHhcCCeeecCCCcceEEEc--
Confidence            9 888888876543 357788888888888887                       9999999999999999999876  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (292)
T cd06644         145 --------------------------------------------------------------------------------  144 (292)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeee-----cCCCCCccceeeeeeeeEeeccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                   ..+.++|+|||++.....   ......+++.|+|||.+.     ...++.++|+|||||++|+|++|
T Consensus       145 -------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~il~el~~g  211 (292)
T cd06644         145 -------------LDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQI  211 (292)
T ss_pred             -------------CCCCEEEccCccceeccccccccceecCCccccCceeeccccccCCCCCchhhhHhHHHHHHHHhcC
Confidence                         235689999998764221   223456788999999985     34567889999999999999999


Q ss_pred             cccccccCCCc
Q psy2006         311 ITLMARKTKTK  321 (351)
Q Consensus       311 ~~pf~~~~~~~  321 (351)
                      ..||...+..+
T Consensus       212 ~~p~~~~~~~~  222 (292)
T cd06644         212 EPPHHELNPMR  222 (292)
T ss_pred             CCCCccccHHH
Confidence            99998765443

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.96  E-value=2.1e-30  Score=238.76  Aligned_cols=193  Identities=21%  Similarity=0.274  Sum_probs=163.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||.|+||.||+|++..+++.||+|.+.... ...+.+.+|+.+++.+.|+|      |+++++.|....+.|+||||+
T Consensus        26 ~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~------v~~~~~~~~~~~~~~lv~e~~   99 (296)
T cd06654          26 EKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN------IVNYLDSYLVGDELWVVMEYL   99 (296)
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCC------EeeEEEEEEeCCEEEEeeccc
Confidence            57999999999999998899999999997532 33456788999999999887      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++...   .+++..+..++.|++.+                       |.|||++|++|+|+++.|+.+.+  
T Consensus       100 ~~~~L~~~~~~~---~~~~~~~~~i~~ql~~a-----------------------L~~LH~~gi~H~dLkp~Nill~~--  151 (296)
T cd06654         100 AGGSLTDVVTET---CMDEGQIAAVCRECLQA-----------------------LEFLHSNQVIHRDIKSDNILLGM--  151 (296)
T ss_pred             CCCCHHHHHHhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHEEEcC--
Confidence             89999998653   46777777778877777                       99999999999999999998861  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (296)
T cd06654         152 --------------------------------------------------------------------------------  151 (296)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                   ...++|+|||.+.....   ......+++.|+|||.+.+..++.++|+|||||++|++++|..||..
T Consensus       152 -------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~s~Gvil~~l~~g~~pf~~  218 (296)
T cd06654         152 -------------DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLN  218 (296)
T ss_pred             -------------CCCEEECccccchhccccccccCcccCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCCC
Confidence                         24689999998764321   12345788999999999888889999999999999999999999987


Q ss_pred             cCCCc
Q psy2006         317 KTKTK  321 (351)
Q Consensus       317 ~~~~~  321 (351)
                      .+..+
T Consensus       219 ~~~~~  223 (296)
T cd06654         219 ENPLR  223 (296)
T ss_pred             CCHHH
Confidence            66543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>KOG0986|consensus

Probab=99.96  E-value=2.6e-31  Score=243.44  Aligned_cols=192  Identities=19%  Similarity=0.278  Sum_probs=162.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh----hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK----YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~----~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      |.||.|+||.||-++.+.+|+.||+|.+.+...    -..-+..|-++|++++++.      ||.|--+|+..+.+|+||
T Consensus       191 RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~F------iVslaYAfeTkd~LClVL  264 (591)
T KOG0986|consen  191 RVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPF------IVSLAYAFETKDALCLVL  264 (591)
T ss_pred             EEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCc------EEEEeeeecCCCceEEEE
Confidence            579999999999999999999999999976431    1234678999999998776      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ..| ||||.=.|-..+...+++..++                       +|..+++.||++||+.+|+.||+||.||.|.
T Consensus       265 tlMNGGDLkfHiyn~g~~gF~e~ra~-----------------------FYAAEi~cGLehlH~~~iVYRDLKPeNILLD  321 (591)
T KOG0986|consen  265 TLMNGGDLKFHIYNHGNPGFDEQRAR-----------------------FYAAEIICGLEHLHRRRIVYRDLKPENILLD  321 (591)
T ss_pred             EeecCCceeEEeeccCCCCCchHHHH-----------------------HHHHHHHhhHHHHHhcceeeccCChhheeec
Confidence            999 9999877766554455555444                       5555555559999999999999999999998


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      |                                                                               
T Consensus       322 d-------------------------------------------------------------------------------  322 (591)
T KOG0986|consen  322 D-------------------------------------------------------------------------------  322 (591)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcce--eccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                      .++|+|+|+|++.-  .+.+....+||..|||||++....|+.++|+||+||++|+|+.|..||
T Consensus       323 ----------------~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl~ne~Y~~s~Dwf~lGCllYemi~G~sPF  386 (591)
T KOG0986|consen  323 ----------------HGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVLQNEVYDFSPDWFSLGCLLYEMIAGHSPF  386 (591)
T ss_pred             ----------------CCCeEeeccceEEecCCCCccccccCcccccCHHHHcCCcccCCccHHHHHhHHHHHHcccCch
Confidence                            45799999999865  345566679999999999999988999999999999999999999999


Q ss_pred             ccc
Q psy2006         315 ARK  317 (351)
Q Consensus       315 ~~~  317 (351)
                      -.+
T Consensus       387 r~~  389 (591)
T KOG0986|consen  387 RQR  389 (591)
T ss_pred             hhh
Confidence            654

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.96  E-value=2.9e-30  Score=235.74  Aligned_cols=195  Identities=22%  Similarity=0.301  Sum_probs=162.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||+|+||.||+|.+..+++.||+|++....   ...+.+.+|+.+++.++|+|      |+++++++..+++.|+||
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~v~   78 (285)
T cd07861           5 IEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPN------IVCLQDVLMQESRLYLIF   78 (285)
T ss_pred             eeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCC------EeeeEEEEeeCCeEEEEE
Confidence            368999999999999998899999999996532   22356788999999999877      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCC-CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EILGLSVFDFLKENNY-LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+.++|.+++..... ..+++..++.++.|++.|                       |.|||+.+++|+|+++.|+.+.
T Consensus        79 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~-----------------------L~~lH~~~i~H~dl~p~nil~~  135 (285)
T cd07861          79 EFLSMDLKKYLDSLPKGQYMDAELVKSYLYQILQG-----------------------ILFCHSRRVLHRDLKPQNLLID  135 (285)
T ss_pred             ecCCCCHHHHHhcCCCCCcCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeecCCCHHHEEEc
Confidence            9998899999876532 457788888888888888                       9999999999999999999876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (285)
T cd07861         136 --------------------------------------------------------------------------------  135 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                     ..+.++|+|||++......   .....+++.|+|||.+.+. .++.++|+|||||++++++||.+
T Consensus       136 ---------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~  200 (285)
T cd07861         136 ---------------NKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPRYSTPVDIWSIGTIFAEMATKKP  200 (285)
T ss_pred             ---------------CCCcEEECcccceeecCCCcccccCCcccccccChHHhcCCCCcCcHHHHHHHHHHHHHHHHCCC
Confidence                           2346899999987643221   2234567899999988654 46889999999999999999999


Q ss_pred             cccccCC
Q psy2006         313 LMARKTK  319 (351)
Q Consensus       313 pf~~~~~  319 (351)
                      ||.+.+.
T Consensus       201 ~~~~~~~  207 (285)
T cd07861         201 LFHGDSE  207 (285)
T ss_pred             CCCCCCH
Confidence            9987654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.96  E-value=5.7e-30  Score=233.76  Aligned_cols=197  Identities=25%  Similarity=0.322  Sum_probs=163.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||.|+||.||+|.+..++..+|+|.+... ....+.+.+|+.+++.+.|+|      |+++++.|...+..++||||+
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~------ii~~~~~~~~~~~~~~v~e~~   84 (282)
T cd06643          11 GELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN------IVKLLDAFYYENNLWILIEFC   84 (282)
T ss_pred             hhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCC------eeeEEEEEeeCCEEEEEEEec
Confidence            5799999999999999889999999999753 334556788999999999887      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|..++.+.. .++++..+..++.|++.+                       |.|||+.|++|+|+++.|+.+.   
T Consensus        85 ~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~~-----------------------L~~LH~~~i~H~dlkp~nili~---  137 (282)
T cd06643          85 AGGAVDAVMLELE-RPLTEPQIRVVCKQTLEA-----------------------LNYLHENKIIHRDLKAGNILFT---  137 (282)
T ss_pred             CCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecCCCcccEEEc---
Confidence             889988876543 357788888888888887                       9999999999999999999876   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (282)
T cd06643         138 --------------------------------------------------------------------------------  137 (282)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeee-----cCCCCCccceeeeeeeeEeecccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                  ....++++|||++.....   ......+++.|+|||.+.     +..++.++|+||+||++|++++|.
T Consensus       138 ------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvil~el~~g~  205 (282)
T cd06643         138 ------------LDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAQIE  205 (282)
T ss_pred             ------------cCCCEEEccccccccccccccccccccccccccCHhhccccCCCCCCCCccchhhhHHHHHHHHccCC
Confidence                        235689999998754321   223456889999999884     345678999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      +||...+..+.+
T Consensus       206 ~p~~~~~~~~~~  217 (282)
T cd06643         206 PPHHELNPMRVL  217 (282)
T ss_pred             CCccccCHHHHH
Confidence            999877655443

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG0596|consensus

Probab=99.96  E-value=1.7e-30  Score=243.05  Aligned_cols=192  Identities=21%  Similarity=0.321  Sum_probs=155.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||+|+.+.||++.. .+.+.||+|.+...   ......+..|+..|.+|+     |+..||+|+||-..++.+||||
T Consensus       366 lk~iG~GGSSkV~kV~~-s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLk-----g~~~IIqL~DYEv~d~~lYmvm  439 (677)
T KOG0596|consen  366 LKQIGSGGSSKVFKVLN-SDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLK-----GHDKIIQLYDYEVTDGYLYMVM  439 (677)
T ss_pred             HHhhcCCCcceeeeeec-CCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhc-----CCceEEEEeeeeccCceEEEEe
Confidence            47899999999999996 45667777776532   344567789999999997     3334999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+=..||.++++.... ..+.-.++.+..|++.+                       +.+.|..||+|.|+||.|..++ 
T Consensus       440 E~Gd~DL~kiL~k~~~-~~~~~~lk~ywkqML~a-----------------------V~~IH~~gIVHSDLKPANFLlV-  494 (677)
T KOG0596|consen  440 ECGDIDLNKILKKKKS-IDPDWFLKFYWKQMLLA-----------------------VKTIHQHGIVHSDLKPANFLLV-  494 (677)
T ss_pred             ecccccHHHHHHhccC-CCchHHHHHHHHHHHHH-----------------------HHHHHHhceeecCCCcccEEEE-
Confidence            9999999999998863 33444666666666666                       9999999999999999998887 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       495 --------------------------------------------------------------------------------  494 (677)
T KOG0596|consen  495 --------------------------------------------------------------------------------  494 (677)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecC-----------CCCCccceeeee
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILEL-----------GWAQPCDVWSIG  301 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~-----------~~~~~~DiwslG  301 (351)
                                     .+.+||+|||.+.....     ...+.+||+.||+||.+...           .+++++||||||
T Consensus       495 ---------------kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLG  559 (677)
T KOG0596|consen  495 ---------------KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLG  559 (677)
T ss_pred             ---------------eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhh
Confidence                           46789999998765221     23568999999999988732           257899999999


Q ss_pred             eeeEeeccccccccccC
Q psy2006         302 CIIFELYLGITLMARKT  318 (351)
Q Consensus       302 ~~l~~l~tG~~pf~~~~  318 (351)
                      |++|+|+.|++||...-
T Consensus       560 CILYqMvYgktPf~~~~  576 (677)
T KOG0596|consen  560 CILYQMVYGKTPFGQII  576 (677)
T ss_pred             hHHHHHHhcCCchHHHH
Confidence            99999999999997643

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.96  E-value=4.6e-30  Score=244.29  Aligned_cols=218  Identities=20%  Similarity=0.238  Sum_probs=163.9

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      ++||.|+||+||+|.+.     .++..||+|+++..  ....+.+.+|+++|+.+ .|+|      |+++++++...++.
T Consensus        41 ~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~Hpn------Iv~l~~~~~~~~~~  114 (375)
T cd05104          41 KTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHIN------IVNLLGACTVGGPT  114 (375)
T ss_pred             heecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcc------eeeeeeeeccCCcc
Confidence            57999999999999753     35679999999743  23345678899999999 6766      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCC-C----chHH---HHHHHHHHH-----------------------------------
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLP-Y----SLDQ---VRHMSYQLI-----------------------------------  109 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~-~----~~~~---~~~~~~ql~-----------------------------------  109 (351)
                      ++||||| +|+|.++++...... .    ....   .+.++.+..                                   
T Consensus       115 ~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (375)
T cd05104         115 LVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSY  194 (375)
T ss_pred             eeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCccccccccccccccccccee
Confidence            9999999 999999998753210 0    0000   000000000                                   


Q ss_pred             -------HhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCcc
Q psy2006         110 -------YAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPER  182 (351)
Q Consensus       110 -------~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~  182 (351)
                             ...+.....+++..+..++.|++.||.|||+.+++|||+|+.|+.+.+                         
T Consensus       195 ~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~-------------------------  249 (375)
T cd05104         195 IDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTH-------------------------  249 (375)
T ss_pred             cccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEEC-------------------------
Confidence                   001122345788888999999999999999999999999999998862                         


Q ss_pred             ccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccC
Q psy2006         183 YMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFG  262 (351)
Q Consensus       183 ~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg  262 (351)
                                                                                            ...+||+|||
T Consensus       250 ----------------------------------------------------------------------~~~~kl~DfG  259 (375)
T cd05104         250 ----------------------------------------------------------------------GRITKICDFG  259 (375)
T ss_pred             ----------------------------------------------------------------------CCcEEEecCc
Confidence                                                                                  2458899999


Q ss_pred             Ccceecccc-----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccCCC
Q psy2006         263 SATFDDEHH-----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKTKT  320 (351)
Q Consensus       263 ~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~~~  320 (351)
                      ++.......     ....++..|+|||.+.+..++.++|+|||||++|++++ |..||.+....
T Consensus       260 ~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~slG~~l~ellt~g~~p~~~~~~~  323 (375)
T cd05104         260 LARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEIFSLGSSPYPGMPVD  323 (375)
T ss_pred             cceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCch
Confidence            886532211     12334567999999999899999999999999999997 99999876544

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.96  E-value=3.8e-30  Score=235.02  Aligned_cols=194  Identities=19%  Similarity=0.270  Sum_probs=153.9

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      .||+|+||.||++.+..+++.||+|.+.+..    ........|..+++.+.+.   .+.+|+.+++.|...+..++|||
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~lv~e   77 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTG---DCPFIVCMTYAFHTPDKLCFILD   77 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhC---CCCcEeEEEEEEecCCeEEEEEe
Confidence            4899999999999998899999999996532    1122334555555544321   11229999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++....  .+++..++.++.|++.|                       |+|||+.+++|+|+|++|+.+. 
T Consensus        78 ~~~~~~L~~~i~~~~--~l~~~~~~~i~~qi~~a-----------------------l~~lH~~~ivH~dikp~Nil~~-  131 (279)
T cd05633          78 LMNGGDLHYHLSQHG--VFSEKEMRFYATEIILG-----------------------LEHMHNRFVVYRDLKPANILLD-  131 (279)
T ss_pred             cCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcCCCCCCHHHEEEC-
Confidence            99 899999887654  57888888888888888                       9999999999999999999876 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       132 --------------------------------------------------------------------------------  131 (279)
T cd05633         132 --------------------------------------------------------------------------------  131 (279)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc-ccccccccceeeCceeee-cCCCCCccceeeeeeeeEeecccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-HHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                    ....++|+|||++..... ......|++.|+|||.+. +..++.++|+||+||+++++++|..||.
T Consensus       132 --------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  197 (279)
T cd05633         132 --------------EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCMLFKLLRGHSPFR  197 (279)
T ss_pred             --------------CCCCEEEccCCcceeccccCccCcCCCcCccCHHHhcCCCCCCchhhhHHHHHHHHHHHhCCCCcC
Confidence                          234689999998764322 223356899999999886 4567899999999999999999999997


Q ss_pred             ccCC
Q psy2006         316 RKTK  319 (351)
Q Consensus       316 ~~~~  319 (351)
                      ..+.
T Consensus       198 ~~~~  201 (279)
T cd05633         198 QHKT  201 (279)
T ss_pred             CCCC
Confidence            6543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.96  E-value=5e-30  Score=230.78  Aligned_cols=197  Identities=17%  Similarity=0.233  Sum_probs=162.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++.||+|+||.||+|.. ..+..+|+|.+.......+.+..|+++++.+.|+|      |+++++++...+..|+||||+
T Consensus         9 ~~~lg~G~~~~vy~~~~-~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~iv~e~~   81 (256)
T cd05114           9 MKELGSGQFGVVHLGKW-RAQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHPK------LVQLYGVCTQQKPLYIVTEFM   81 (256)
T ss_pred             eeEecCCcCceEEEEEe-ccCceEEEEecccCCccHHHHHHHHHHHHHCCCCC------ceeEEEEEccCCCEEEEEEcC
Confidence            36799999999999986 45668999998765444567788999999999877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.... ..+++..++.++.|++.+                       |.|||+++++|+|++++|+.+.+  
T Consensus        82 ~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dl~p~ni~i~~--  135 (256)
T cd05114          82 ENGCLLNYLRQRQ-GKLSKDMLLSMCQDVCEG-----------------------MEYLERNSFIHRDLAARNCLVSS--  135 (256)
T ss_pred             CCCcHHHHHHhCc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccccCcceEEEcC--
Confidence             899999987653 257778888888888887                       99999999999999999998862  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (256)
T cd05114         136 --------------------------------------------------------------------------------  135 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLM  314 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf  314 (351)
                                   ...++|+|||.+.......    ....++..|+|||.+.+..++.++|+||+|+++|++++ |..||
T Consensus       136 -------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s~G~~l~el~~~g~~p~  202 (256)
T cd05114         136 -------------TGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSKSDVWSFGVLMWEVFTEGKMPF  202 (256)
T ss_pred             -------------CCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccchhhhhHHHHHHHHHHHcCCCCCC
Confidence                         3458999999876432111    12234567999999988889999999999999999999 99999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      ...+..+.+
T Consensus       203 ~~~~~~~~~  211 (256)
T cd05114         203 EKKSNYEVV  211 (256)
T ss_pred             CCCCHHHHH
Confidence            887765544

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.96  E-value=9.3e-30  Score=228.48  Aligned_cols=196  Identities=22%  Similarity=0.271  Sum_probs=167.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||+|+||.||+|.+..+++.||+|.+...   ......+.+|+.+++.++|+|      |+++++.+...+..|+|||
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08529           6 NKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSY------IIRYYESFLDKGKLNIVME   79 (256)
T ss_pred             EEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCC------eehheeeeccCCEEEEEEE
Confidence            5799999999999999999999999998643   344567788999999999888      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++.......+++..+..++.|++.+                       |.|||+.|++|+|+++.|+.+. 
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~a-----------------------l~~lH~~~i~h~dl~~~nili~-  135 (256)
T cd08529          80 YAENGDLHKLLKMQRGRPLPEDQVWRFFIQILLG-----------------------LAHLHSKKILHRDIKSLNLFLD-  135 (256)
T ss_pred             eCCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCcceEEEe-
Confidence            99 8999999987644567788888888888887                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (256)
T cd08529         136 --------------------------------------------------------------------------------  135 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ....++|+|||++.....   ......|++.|+|||.+.+..++.++|+|||||+++++++|..||
T Consensus       136 --------------~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~  201 (256)
T cd08529         136 --------------AYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYNEKSDVWALGVVLYECCTGKHPF  201 (256)
T ss_pred             --------------CCCCEEEcccccceeccCccchhhccccCccccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCC
Confidence                          235689999998765322   123456788999999998888999999999999999999999999


Q ss_pred             cccCCCc
Q psy2006         315 ARKTKTK  321 (351)
Q Consensus       315 ~~~~~~~  321 (351)
                      ...+..+
T Consensus       202 ~~~~~~~  208 (256)
T cd08529         202 DANNQGA  208 (256)
T ss_pred             CCCCHHH
Confidence            8776443

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=3.2e-30  Score=250.31  Aligned_cols=185  Identities=23%  Similarity=0.301  Sum_probs=157.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      ++||.|+||.||+|.+..+++.||+|....     ....+|+++|++|+|+|      |+++++++...+..|+|||++.
T Consensus       175 ~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~~-----~~~~~E~~iL~~L~Hpn------Iv~l~~~~~~~~~~~lv~e~~~  243 (461)
T PHA03211        175 RALTPGSEGCVFESSHPDYPQRVVVKAGWY-----ASSVHEARLLRRLSHPA------VLALLDVRVVGGLTCLVLPKYR  243 (461)
T ss_pred             EEEccCCCeEEEEEEECCCCCEEEEecccc-----cCHHHHHHHHHHCCCCC------CCcEEEEEEECCEEEEEEEccC
Confidence            579999999999999999999999997542     34568999999999888      9999999999999999999998


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCc
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      ++|.+++.... ..+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.     
T Consensus       244 ~~L~~~l~~~~-~~l~~~~~~~i~~qi~~a-----------------------L~yLH~~gIvHrDLKP~NILl~-----  294 (461)
T PHA03211        244 SDLYTYLGARL-RPLGLAQVTAVARQLLSA-----------------------IDYIHGEGIIHRDIKTENVLVN-----  294 (461)
T ss_pred             CCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEECcCCHHHEEEC-----
Confidence            89999987653 357888888888888888                       9999999999999999999886     


Q ss_pred             ccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhc
Q psy2006         162 TFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (351)
                                                                                                      
T Consensus       295 --------------------------------------------------------------------------------  294 (461)
T PHA03211        295 --------------------------------------------------------------------------------  294 (461)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                ....++|+|||++......     .....||+.|+|||++.+..++.++|+|||||++|++++|..++..
T Consensus       295 ----------~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~sDvwSlGviL~El~~g~~~lf~  364 (461)
T PHA03211        295 ----------GPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPSVDIWSAGLVIFEAAVHTASLFS  364 (461)
T ss_pred             ----------CCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCCCchHHHHHHHHHHHHHHHcCCCccc
Confidence                      1346899999998653221     1235689999999999998999999999999999999998765543

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.96  E-value=7.5e-30  Score=230.93  Aligned_cols=195  Identities=22%  Similarity=0.278  Sum_probs=162.0

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +++||+|+||.||+|.+..+++.||+|++.... .....+.+|+.+++.++|++      |+++++++...+.+++||||
T Consensus        14 ~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~------ii~~~~~~~~~~~~~iv~e~   87 (267)
T cd06646          14 IQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCN------IVAYFGSYLSREKLWICMEY   87 (267)
T ss_pred             hheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCC------eeeeeEEEEeCCEEEEEEeC
Confidence            368999999999999998899999999997532 23345678999999999888      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.++++...  .+++..+..++.|++.+                       ++|||+.+++|+|+++.|+.+.+ 
T Consensus        88 ~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl~p~nill~~-  141 (267)
T cd06646          88 CGGGSLQDIYHVTG--PLSELQIAYVCRETLQG-----------------------LAYLHSKGKMHRDIKGANILLTD-  141 (267)
T ss_pred             CCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCCHHHEEECC-
Confidence            9 789999987654  57777788888888777                       99999999999999999998862 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       142 --------------------------------------------------------------------------------  141 (267)
T cd06646         142 --------------------------------------------------------------------------------  141 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeee---cCCCCCccceeeeeeeeEeeccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVIL---ELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                    ...++|+|||++.....   ......|++.|+|||.+.   ...++.++|+||+||++|++++|..
T Consensus       142 --------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~Dvws~G~il~el~~g~~  207 (267)
T cd06646         142 --------------NGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQP  207 (267)
T ss_pred             --------------CCCEEECcCccceeecccccccCccccCccccCHhHcccccCCCCcchhhHHHHHHHHHHHHhCCC
Confidence                          34589999999865322   123456788999999875   3446789999999999999999999


Q ss_pred             cccccCCCc
Q psy2006         313 LMARKTKTK  321 (351)
Q Consensus       313 pf~~~~~~~  321 (351)
                      ||...+..+
T Consensus       208 p~~~~~~~~  216 (267)
T cd06646         208 PMFDLHPMR  216 (267)
T ss_pred             Cccccchhh
Confidence            997655443

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG1026|consensus

Probab=99.96  E-value=1.3e-30  Score=255.53  Aligned_cols=220  Identities=19%  Similarity=0.272  Sum_probs=175.2

Q ss_pred             CccccCcccceEEEEEEee-----cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           1 MCSLNCVASNHVCTNVVYE-----VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +++||+|+||+||+|+-..     ....||||.++..  ...+..+++|+.+|..|+|+|      ||++++.+...+-+
T Consensus       491 ~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~n------IVrLlGVC~~~~P~  564 (774)
T KOG1026|consen  491 KEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPN------IVRLLGVCREGDPL  564 (774)
T ss_pred             hhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCC------eEEEEEEEccCCee
Confidence            4789999999999998543     4578999999754  335678999999999999988      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      |||+||| .|||.++++......           ....+.+..-.+++..+...+..|++.|++||-++.++|||+..-|
T Consensus       565 ~MvFEYm~~GDL~eFLra~sP~a-----------~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRN  633 (774)
T KOG1026|consen  565 CMVFEYMDHGDLHEFLRARSPKA-----------DKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRN  633 (774)
T ss_pred             EEEEEecccccHHHHHHhhCCcc-----------ccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhh
Confidence            9999999 999999998874210           0000111112346677777777777777999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.++                                                                            
T Consensus       634 CLVg----------------------------------------------------------------------------  637 (774)
T KOG1026|consen  634 CLVG----------------------------------------------------------------------------  637 (774)
T ss_pred             ceec----------------------------------------------------------------------------
Confidence            8887                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccc-----cccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHS-----TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                         ....|||+|||+++-.-....     ...-...||+||.|+.+.|+.++||||+||+|||+
T Consensus       638 -------------------e~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIRWMppEsIly~kFTteSDVWs~GVvLWEI  698 (774)
T KOG1026|consen  638 -------------------ENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIRWMPPESILYGKFTTESDVWSFGVVLWEI  698 (774)
T ss_pred             -------------------cceEEEecccccchhhhhhhhhcccCCceeeeecCCHHHhhcCcccchhhhhhhhhhhhhh
Confidence                               246799999999875222111     22234689999999999999999999999999999


Q ss_pred             cc-ccccccccCCCceee---ecccCCccc
Q psy2006         308 YL-GITLMARKTKTKYFY---HGKLDWDEK  333 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~~~---~~~~~~~~~  333 (351)
                      .+ |.-|+.+.+.+|++.   +|.+ |++.
T Consensus       699 FsyG~QPy~glSn~EVIe~i~~g~l-L~~P  727 (774)
T KOG1026|consen  699 FSYGKQPYYGLSNQEVIECIRAGQL-LSCP  727 (774)
T ss_pred             hccccCcccccchHHHHHHHHcCCc-ccCC
Confidence            96 999999999999874   5666 4443

>KOG1989|consensus

Probab=99.96  E-value=2.6e-30  Score=254.40  Aligned_cols=209  Identities=22%  Similarity=0.257  Sum_probs=167.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCC-------e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHG-------H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~-------~   72 (351)
                      +-|.+|+|+.||+|.+...+..||+|.+-.. +..-+.+.+||.+|+.|+ |+|      ||.++|......       .
T Consensus        43 ~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~n------IV~yidss~~~~~~~~~~~E  116 (738)
T KOG1989|consen   43 KVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKN------IVSYIDSSAINRSSNNGVWE  116 (738)
T ss_pred             EEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCc------eeeEeccccccccCCCceeE
Confidence            4588999999999999888899999998643 344567889999999997 444      999999433222       7


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc--ccccccC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK--REVRRVR  149 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~d~k  149 (351)
                      +.|.|||| ||+|-|+|..+-..+|.|..|.+|+.++++|                       +.+||...  ++|||||
T Consensus       117 vllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~A-----------------------Va~mH~~~pPiIHRDLK  173 (738)
T KOG1989|consen  117 VLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEA-----------------------VAAMHYLKPPIIHRDLK  173 (738)
T ss_pred             EEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHH-----------------------HHHHhcCCCccchhhhh
Confidence            89999999 7999999998766679999999999999999                       99999887  9999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      -+|++|.                                                                         
T Consensus       174 iENvLls-------------------------------------------------------------------------  180 (738)
T KOG1989|consen  174 IENVLLS-------------------------------------------------------------------------  180 (738)
T ss_pred             hhheEEc-------------------------------------------------------------------------
Confidence            9999988                                                                         


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceecccc------------ccccccceeeCceeee---cCCCCCc
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH------------STIVSTRHYRAPEVIL---ELGWAQP  294 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~------------~~~~gt~~y~aPE~~~---~~~~~~~  294 (351)
                                            ..+..||||||.+.......            -...-|+-|++||.+.   +.+.+.|
T Consensus       181 ----------------------~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~YRsPEMIDlysg~pI~eK  238 (738)
T KOG1989|consen  181 ----------------------ADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQYRSPEMIDLYSGLPIGEK  238 (738)
T ss_pred             ----------------------CCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCccccChHHHhhhcCCCCcch
Confidence                                  24578999999876421111            1123479999999774   5678999


Q ss_pred             cceeeeeeeeEeeccccccccccCCCceeeecccCCccccc
Q psy2006         295 CDVWSIGCIIFELYLGITLMARKTKTKYFYHGKLDWDEKGT  335 (351)
Q Consensus       295 ~DiwslG~~l~~l~tG~~pf~~~~~~~~~~~~~~~~~~~~~  335 (351)
                      +|||+|||+||-|+....||.....- .+.+|.+.++..++
T Consensus       239 sDIWALGclLYkLCy~t~PFe~sg~l-aIlng~Y~~P~~p~  278 (738)
T KOG1989|consen  239 SDIWALGCLLYKLCYFTTPFEESGKL-AILNGNYSFPPFPN  278 (738)
T ss_pred             hHHHHHHHHHHHHHHhCCCcCcCcce-eEEeccccCCCCcc
Confidence            99999999999999999999765433 34566776666544

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.96  E-value=4.7e-30  Score=235.28  Aligned_cols=192  Identities=23%  Similarity=0.360  Sum_probs=161.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||.|+||+||+|.++.+++.||+|.+....  .......+|+.+++.++|+|      |+++++++...++.|+||||
T Consensus        11 ~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~   84 (291)
T cd07844          11 DKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHAN------IVTLHDIIHTKKTLTLVFEY   84 (291)
T ss_pred             EEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcc------eeeEEEEEecCCeEEEEEec
Confidence            57999999999999998899999999997532  22345678999999999887      99999999999999999999


Q ss_pred             cCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          80 LGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        80 ~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                      ++++|.+++.+.. ..+++..++.++.|++.|                       |.|||+++++|+|+++.|+.+.   
T Consensus        85 ~~~~L~~~~~~~~-~~~~~~~~~~~~~ql~~a-----------------------l~~lH~~~i~H~dl~p~nil~~---  137 (291)
T cd07844          85 LDTDLKQYMDDCG-GGLSMHNVRLFLFQLLRG-----------------------LAYCHQRRVLHRDLKPQNLLIS---  137 (291)
T ss_pred             CCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecccCCHHHEEEc---
Confidence            9889999988764 267888888888888888                       9999999999999999999886   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (291)
T cd07844         138 --------------------------------------------------------------------------------  137 (291)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                  ..+.++|+|||.+.....   ......+++.|+|||.+.+ ..++.++|+||+||++|+|++|..||.
T Consensus       138 ------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~il~~l~~g~~~~~  205 (291)
T cd07844         138 ------------ERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVGCIFYEMATGRPLFP  205 (291)
T ss_pred             ------------CCCCEEECccccccccCCCCccccccccccccCCcHHhhcCcccCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                        234689999998764321   1122346788999999876 457889999999999999999999997


Q ss_pred             ccC
Q psy2006         316 RKT  318 (351)
Q Consensus       316 ~~~  318 (351)
                      +.+
T Consensus       206 ~~~  208 (291)
T cd07844         206 GST  208 (291)
T ss_pred             CCc
Confidence            655

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>KOG0579|consensus

Probab=99.96  E-value=2.7e-31  Score=251.45  Aligned_cols=198  Identities=23%  Similarity=0.313  Sum_probs=168.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ..||.|+||.||+|.++.++-..|.|++... ...-+...-||.||....|++      |+.|++.|-..+.+||..|||
T Consensus        38 GELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~------ivkLl~ayy~enkLwiliEFC  111 (1187)
T KOG0579|consen   38 GELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPV------IVKLLSAYYFENKLWILIEFC  111 (1187)
T ss_pred             hhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChH------HHHHHHHHhccCceEEEEeec
Confidence            4689999999999999999999999999643 333456778999999998777      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       ||-....|-..+ ..+.+++++.+++|++.+                       |.|||+++|+|||+|.|||.+.   
T Consensus       112 ~GGAVDaimlEL~-r~LtE~QIqvvc~q~ldA-----------------------Ln~LHs~~iIHRDLKAGNiL~T---  164 (1187)
T KOG0579|consen  112 GGGAVDAIMLELG-RVLTEDQIQVVCYQVLDA-----------------------LNWLHSQNIIHRDLKAGNILLT---  164 (1187)
T ss_pred             CCchHhHHHHHhc-cccchHHHHHHHHHHHHH-----------------------HHHHhhcchhhhhccccceEEE---
Confidence             677777766665 467777777777777777                       9999999999999999999987   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (1187)
T KOG0579|consen  165 --------------------------------------------------------------------------------  164 (1187)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeee-----cCCCCCccceeeeeeeeEeecccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                  ..+.++|+|||.+-...   ....+++|||.|||||++.     ..+|..++||||||++|.+|+.+.
T Consensus       165 ------------ldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiE  232 (1187)
T KOG0579|consen  165 ------------LDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIE  232 (1187)
T ss_pred             ------------ecCcEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccC
Confidence                        35789999999875432   3446799999999999876     578999999999999999999999


Q ss_pred             ccccccCCCceee
Q psy2006         312 TLMARKTKTKYFY  324 (351)
Q Consensus       312 ~pf~~~~~~~~~~  324 (351)
                      +|-..-+.+-++.
T Consensus       233 PPHhelnpMRVll  245 (1187)
T KOG0579|consen  233 PPHHELNPMRVLL  245 (1187)
T ss_pred             CCccccchHHHHH
Confidence            9998888777664

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.96  E-value=9.3e-30  Score=230.31  Aligned_cols=193  Identities=21%  Similarity=0.279  Sum_probs=161.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||.|+||.||+|.+..+++.||+|+++... .....+.+|+.+++.++|+|      |+++++.+...+..++||||+
T Consensus        15 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~------ii~~~~~~~~~~~~~lv~e~~   88 (267)
T cd06645          15 QRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSN------IVAYFGSYLRRDKLWICMEFC   88 (267)
T ss_pred             HHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCC------eeeEEEEEEeCCEEEEEEecc
Confidence            57999999999999998999999999997542 22345678999999999888      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++...+  .+++..+..++.|++.+                       ++|||+.|++|+|+++.|+.+.   
T Consensus        89 ~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dlkp~nili~---  140 (267)
T cd06645          89 GGGSLQDIYHVTG--PLSESQIAYVSRETLQG-----------------------LYYLHSKGKMHRDIKGANILLT---  140 (267)
T ss_pred             CCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEEEC---
Confidence             789999987764  57788888888888877                       9999999999999999999876   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (267)
T cd06645         141 --------------------------------------------------------------------------------  140 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeee---cCCCCCccceeeeeeeeEeecccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVIL---ELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                  ....++|+|||++.....   ......|++.|+|||.+.   ...++.++|+||+||++|++++|..|
T Consensus       141 ------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~DvwSlG~il~~l~~~~~p  208 (267)
T cd06645         141 ------------DNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWAVGITAIELAELQPP  208 (267)
T ss_pred             ------------CCCCEEECcceeeeEccCcccccccccCcccccChhhhccccCCCCCchhhhHHHHHHHHHHhcCCCC
Confidence                        234689999998764322   223457889999999874   44578899999999999999999999


Q ss_pred             ccccCCC
Q psy2006         314 MARKTKT  320 (351)
Q Consensus       314 f~~~~~~  320 (351)
                      |......
T Consensus       209 ~~~~~~~  215 (267)
T cd06645         209 MFDLHPM  215 (267)
T ss_pred             cccccch
Confidence            9765443

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.96  E-value=2.4e-30  Score=232.67  Aligned_cols=190  Identities=29%  Similarity=0.446  Sum_probs=163.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhH---HHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYRE---AARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~---~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||++++..+++.||+|++........   ...+|+.+++++.|++      |+++++++......++|||
T Consensus         5 ~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~------i~~~~~~~~~~~~~~~v~~   78 (260)
T PF00069_consen    5 KKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPN------IVQILDVFQDDNYLYIVME   78 (260)
T ss_dssp             EEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTT------BCHEEEEEEESSEEEEEEE
T ss_pred             EEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhccccccccc------ccccccccccccccccccc
Confidence            679999999999999999999999999987543322   2345999999998877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ++ +++|.+++....  .+++..+..++.|++.+                       |++||+.+++|+|+|+.||.+. 
T Consensus        79 ~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------L~~Lh~~~i~H~dikp~NIl~~-  132 (260)
T PF00069_consen   79 YCPGGSLQDYLQKNK--PLSEEEILKIAYQILEA-----------------------LAYLHSKGIVHRDIKPENILLD-  132 (260)
T ss_dssp             EETTEBHHHHHHHHS--SBBHHHHHHHHHHHHHH-----------------------HHHHHHTTEEESSBSGGGEEES-
T ss_pred             ccccccccccccccc--ccccccccccccccccc-----------------------cccccccccccccccccccccc-
Confidence            99 569999998443  57788888888888887                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (260)
T PF00069_consen  133 --------------------------------------------------------------------------------  132 (260)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcce---eccccccccccceeeCceeee-cCCCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~---~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ..+.++|+|||.+..   .........+++.|+|||.+. +..++.++|+||+|+++++|++|..|
T Consensus       133 --------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~p  198 (260)
T PF00069_consen  133 --------------ENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSDIWSLGIILYELLTGKLP  198 (260)
T ss_dssp             --------------TTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHHHHHHHHHHHHHHHSSSS
T ss_pred             --------------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                          245689999999864   233445677899999999987 67789999999999999999999999


Q ss_pred             cccc
Q psy2006         314 MARK  317 (351)
Q Consensus       314 f~~~  317 (351)
                      |...
T Consensus       199 ~~~~  202 (260)
T PF00069_consen  199 FEES  202 (260)
T ss_dssp             STTS
T ss_pred             cccc
Confidence            9877

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.96  E-value=9.9e-30  Score=258.07  Aligned_cols=151  Identities=17%  Similarity=0.199  Sum_probs=127.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||.|+||+||+|.+..+++.||||++....    .....+..|+.++..++|++      |+++++.+...+++|||
T Consensus         9 ~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~------Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           9 VKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPF------IVHLYYSLQSANNVYLV   82 (669)
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCC------cCeEEEEEEECCEEEEE
Confidence            368999999999999999899999999997532    22356788999999999887      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC---
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD---  152 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n---  152 (351)
                      |||+ +++|.+++....  .+++..++.++.||+.|                       |+|||+.+|+|||+|+.|   
T Consensus        83 mEy~~g~~L~~li~~~~--~l~~~~~~~i~~qil~a-----------------------L~yLH~~gIiHrDLKP~NILl  137 (669)
T cd05610          83 MEYLIGGDVKSLLHIYG--YFDEEMAVKYISEVALA-----------------------LDYLHRHGIIHRDLKPDNMLI  137 (669)
T ss_pred             EeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEEeCCccHHHEEE
Confidence            9999 999999998764  57788888888888888                       999999999999999876   


Q ss_pred             -----eEEeecCCcccCCC---CcccccCCCCccCCcc
Q psy2006         153 -----IRLIDFGSATFDDE---HHSTIVSTRHYRAPER  182 (351)
Q Consensus       153 -----i~l~Dfg~s~~~~~---~~~~~~~~~~~~~pe~  182 (351)
                           ++|+|||+++....   ......+|+.|.+||.
T Consensus       138 ~~~g~vkL~DFGls~~~~~~~~~~~~~~~t~~~~~pe~  175 (669)
T cd05610         138 SNEGHIKLTDFGLSKVTLNRELNMMDILTTPSMAKPKN  175 (669)
T ss_pred             cCCCCEEEEeCCCCccccCCcccccccccCccccCccc
Confidence                 48899999976322   3345678888888873

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.96  E-value=7.5e-30  Score=232.39  Aligned_cols=198  Identities=18%  Similarity=0.211  Sum_probs=159.0

Q ss_pred             ccccCcccceEEEEEEee-----cCcEEEEEEecchhh--hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYE-----VDSVVALKIIKNVEK--YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~~~--~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||.||+|.+..     +++.||+|+++....  ..+.+.+|+++|+.+.|++      |+++++++....+.|
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~   84 (280)
T cd05049          11 RELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHEN------IVKFYGVCTEGDPPI   84 (280)
T ss_pred             hhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCC------chheeeEEecCCCeE
Confidence            679999999999998753     468999999975422  3467889999999999877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCC------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc
Q psy2006          75 IAFEIL-GLSVFDFLKENNY------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK  141 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  141 (351)
                      +||||+ +++|.+++...+.            ..+++..+..++.|++.+                       +.++|++
T Consensus        85 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~-----------------------l~~lH~~  141 (280)
T cd05049          85 MVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASG-----------------------MVYLASQ  141 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHH-----------------------HHHHhhC
Confidence            999999 9999999987532            224444555555555555                       9999999


Q ss_pred             cccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         142 KREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       142 ~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                      |++|+|+++.|+.+.                                                                 
T Consensus       142 ~i~h~dlkp~nili~-----------------------------------------------------------------  156 (280)
T cd05049         142 HFVHRDLATRNCLVG-----------------------------------------------------------------  156 (280)
T ss_pred             CeeccccccceEEEc-----------------------------------------------------------------
Confidence            999999999998876                                                                 


Q ss_pred             CCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccc
Q psy2006         222 DKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCD  296 (351)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~D  296 (351)
                                                    ....++|+|||++.....     ......+++.|+|||.+.+..++.++|
T Consensus       157 ------------------------------~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  206 (280)
T cd05049         157 ------------------------------YDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRWMPPESIMYRKFTTESD  206 (280)
T ss_pred             ------------------------------CCCeEEECCcccceecccCcceecCCCCcccceecChhhhccCCcchhhh
Confidence                                          235689999998764211     112334567899999999889999999


Q ss_pred             eeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         297 VWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       297 iwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +|||||++|++++ |..||...+..+..
T Consensus       207 i~slG~il~e~~~~g~~p~~~~~~~~~~  234 (280)
T cd05049         207 VWSFGVVLWEIFTYGKQPWYGLSNEEVI  234 (280)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence            9999999999998 99999877655543

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.4e-29  Score=228.31  Aligned_cols=195  Identities=22%  Similarity=0.255  Sum_probs=163.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +.||+|+||.||+|.+..+++.||+|.+....      .....+.+|+++++++.|+|      |+++++++..++..++
T Consensus         8 ~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~   81 (263)
T cd06625           8 KLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHER------IVQYYGCLRDDETLSI   81 (263)
T ss_pred             ceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCC------eeeeEEEEccCCeEEE
Confidence            57999999999999998899999999986431      12345778999999999888      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |+||+ +++|.+++....  .+++..++.++.|++.+                       +.|||+.|++|+|+++.|+.
T Consensus        82 v~e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~l~~~-----------------------l~~lH~~~i~H~dl~p~nil  136 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYG--ALTETVTRKYTRQILEG-----------------------VEYLHSNMIVHRDIKGANIL  136 (263)
T ss_pred             EEEECCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHEE
Confidence            99999 889999988764  47778888888888877                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       137 v~------------------------------------------------------------------------------  138 (263)
T cd06625         137 RD------------------------------------------------------------------------------  138 (263)
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            76                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                       ....++|+|||.+......      .....++..|+|||.+.+..++.++|+||+||++|+++
T Consensus       139 -----------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~  201 (263)
T cd06625         139 -----------------SAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKADVWSVGCTVVEML  201 (263)
T ss_pred             -----------------CCCCEEEeecccceeccccccccccccCCCcCccccCcceeccCCCCchhhhHHHHHHHHHHH
Confidence                             1346899999987642211      12345778999999999888999999999999999999


Q ss_pred             cccccccccCCCce
Q psy2006         309 LGITLMARKTKTKY  322 (351)
Q Consensus       309 tG~~pf~~~~~~~~  322 (351)
                      +|..||...+..+.
T Consensus       202 ~g~~p~~~~~~~~~  215 (263)
T cd06625         202 TEKPPWAEFEAMAA  215 (263)
T ss_pred             hCCCCccccchHHH
Confidence            99999977654443

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.96  E-value=1.4e-29  Score=227.69  Aligned_cols=199  Identities=23%  Similarity=0.285  Sum_probs=169.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++.||.|+||.||.+++..+++.+|+|.+...   ......+.+|++++++++|+|      |++++++|...+.+++||
T Consensus         5 ~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~------i~~~~~~~~~~~~~~~~~   78 (256)
T cd08221           5 IRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPN------IIAYYNHFMDDNTLLIEM   78 (256)
T ss_pred             eeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCC------eeEEEeEEecCCeEEEEE
Confidence            46899999999999999999999999998643   333456789999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++.+.....+++..+..++.|++.+                       +.|||+.+++|+|+++.|+.+.
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------l~~lh~~~i~h~dl~p~ni~~~  135 (256)
T cd08221          79 EYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSA-----------------------VSYIHKAGILHRDIKTLNIFLT  135 (256)
T ss_pred             EecCCCcHHHHHHhccccCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccccCCChHhEEEe
Confidence            999 8999999987644467888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                                                                               
T Consensus       136 ~-------------------------------------------------------------------------------  136 (256)
T cd08221         136 K-------------------------------------------------------------------------------  136 (256)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                      ...+||+|||.+.....   ......+++.|+|||.+.+..++.++|+||+||+++++++|..|
T Consensus       137 ----------------~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~~~~Dv~slG~i~~~l~~g~~~  200 (256)
T cd08221         137 ----------------AGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYNFKSDIWALGCVLYELLTLKRT  200 (256)
T ss_pred             ----------------CCCEEECcCcceEEcccccccccccCCCccccCHhhcCCCCCCCcchhHHHHHHHHHHHHCCCC
Confidence                            34689999998865322   22446788999999999888888999999999999999999999


Q ss_pred             ccccCCCcee
Q psy2006         314 MARKTKTKYF  323 (351)
Q Consensus       314 f~~~~~~~~~  323 (351)
                      |...+..+.+
T Consensus       201 ~~~~~~~~~~  210 (256)
T cd08221         201 FDATNPLNLV  210 (256)
T ss_pred             CCCCCHHHHH
Confidence            9887655543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.96  E-value=9.2e-30  Score=232.30  Aligned_cols=213  Identities=18%  Similarity=0.240  Sum_probs=159.0

Q ss_pred             CccccCcccceEEEEEEeecC-----cEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVD-----SVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~-----~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      ++.||+|+||.||+|.+...+     +.||+|.+...  ......+.+|+.+++.++|++      |+++++++...+..
T Consensus        10 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~------i~~~~~~~~~~~~~   83 (283)
T cd05048          10 LEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPN------IVCLLGVCTKEQPT   83 (283)
T ss_pred             hhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcc------cceEEEEEcCCCce
Confidence            468999999999999976544     78999999643  233456788999999999877      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      |++|||+ +++|.+++........+.  ..       .........+++..+..++.|++.||.|||+++++|+|+|+.|
T Consensus        84 ~~~~e~~~~~~L~~~l~~~~~~~~~~--~~-------~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~N  154 (283)
T cd05048          84 CMLFEYLAHGDLHEFLVRNSPHSDVG--AE-------SGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARN  154 (283)
T ss_pred             EEEEecCCCCcHHHHHHhcCCCcccc--cc-------cccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccce
Confidence            9999999 899999998753210000  00       0000000123344444444444455999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.+                                                                           
T Consensus       155 il~~~---------------------------------------------------------------------------  159 (283)
T cd05048         155 CLVGE---------------------------------------------------------------------------  159 (283)
T ss_pred             EEEcC---------------------------------------------------------------------------
Confidence            98862                                                                           


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                          ...++|+|||++.....     ......+++.|+|||.+.+..++.++|+|||||++|++
T Consensus       160 --------------------~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv~slG~il~el  219 (283)
T cd05048         160 --------------------GLTVKISDFGLSRDIYSADYYRVQSKSLLPVRWMPPEAILYGKFTTESDIWSFGVVLWEI  219 (283)
T ss_pred             --------------------CCcEEECCCcceeeccccccccccCCCcccccccCHHHhccCcCchhhhHHHHHHHHHHH
Confidence                                34689999998864211     12234567889999999888899999999999999999


Q ss_pred             cc-ccccccccCCCcee
Q psy2006         308 YL-GITLMARKTKTKYF  323 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~~  323 (351)
                      ++ |..||.+.+..+++
T Consensus       220 ~~~g~~p~~~~~~~~~~  236 (283)
T cd05048         220 FSYGLQPYYGFSNQEVI  236 (283)
T ss_pred             HcCCCCCCCCCCHHHHH
Confidence            97 99999887766554

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=5.5e-30  Score=233.55  Aligned_cols=195  Identities=23%  Similarity=0.280  Sum_probs=163.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||.|+||.||+|.+..+++.||+|++... ....+.+.+|+.+++.++|++      |+++++.+..++..|+||||+
T Consensus        11 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~   84 (280)
T cd06611          11 GELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPN------IVGLYEAYFYENKLWILIEFC   84 (280)
T ss_pred             HHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCc------eeEEEEEEecCCeEEEEeecc
Confidence            5799999999999999889999999999753 233456788999999999877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.... ..+++..++.++.|++.+                       |.|||+++++|+|+++.|+.+.   
T Consensus        85 ~~~~L~~~~~~~~-~~l~~~~~~~~~~ql~~~-----------------------l~~lh~~~i~h~dl~p~nili~---  137 (280)
T cd06611          85 DGGALDSIMLELE-RGLTEPQIRYVCRQMLEA-----------------------LNFLHSHKVIHRDLKAGNILLT---  137 (280)
T ss_pred             CCCcHHHHHHHhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCChhhEEEC---
Confidence             889999987654 357888888888888888                       9999999999999999999876   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (280)
T cd06611         138 --------------------------------------------------------------------------------  137 (280)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeee-----cCCCCCccceeeeeeeeEeecccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                  ....++|+|||.+....   .......+++.|++||.+.     ..+++.++|+||+||++|++++|.
T Consensus       138 ------------~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~sDi~slG~il~~l~~g~  205 (280)
T cd06611         138 ------------LDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIWSLGITLIELAQME  205 (280)
T ss_pred             ------------CCCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhCC
Confidence                        23468999999875422   1223456888999999875     345678999999999999999999


Q ss_pred             ccccccCCCc
Q psy2006         312 TLMARKTKTK  321 (351)
Q Consensus       312 ~pf~~~~~~~  321 (351)
                      .||...+..+
T Consensus       206 ~p~~~~~~~~  215 (280)
T cd06611         206 PPHHELNPMR  215 (280)
T ss_pred             CCcccCCHHH
Confidence            9998766544

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.96  E-value=1.8e-29  Score=226.95  Aligned_cols=197  Identities=20%  Similarity=0.252  Sum_probs=165.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC-CeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH-GHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~-~~~~lV   76 (351)
                      ++.||.|+||.||++.+..+++.||+|.+....   ...+...+|+++++.++|++      |+++.+.+... ..+|+|
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~lv   78 (257)
T cd08223           5 VRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPN------IVAYRESWEGEDGLLYIV   78 (257)
T ss_pred             EEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCC------eeeeeeeecCCCCEEEEE
Confidence            368999999999999998899999999996532   23456788999999999877      99999988744 478999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.......+++..++.++.|++.+                       +.++|+.|++|+|+++.|+.+
T Consensus        79 ~e~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~-----------------------l~~lH~~~i~H~di~p~nil~  135 (257)
T cd08223          79 MGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMA-----------------------LQYLHEKHILHRDLKTQNVFL  135 (257)
T ss_pred             ecccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccCCCchhEEE
Confidence            9999 8899999987654568888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       136 ~-------------------------------------------------------------------------------  136 (257)
T cd08223         136 T-------------------------------------------------------------------------------  136 (257)
T ss_pred             e-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ....++|+|||++.....   ......+++.|+|||.+.+..++.++|+||+||+++++++|..
T Consensus       137 ----------------~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~  200 (257)
T cd08223         137 ----------------RTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNYKSDVWALGCCVYEMATLKH  200 (257)
T ss_pred             ----------------cCCcEEEecccceEEecccCCccccccCCcCccChhHhcCCCCCchhhhHHHHHHHHHHHcCCC
Confidence                            234689999998865322   2234567889999999988888999999999999999999999


Q ss_pred             cccccCCCc
Q psy2006         313 LMARKTKTK  321 (351)
Q Consensus       313 pf~~~~~~~  321 (351)
                      ||...+...
T Consensus       201 ~~~~~~~~~  209 (257)
T cd08223         201 AFNAKDMNS  209 (257)
T ss_pred             CCCCCCHHH
Confidence            998766444

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.96  E-value=1.1e-29  Score=243.21  Aligned_cols=217  Identities=18%  Similarity=0.225  Sum_probs=164.1

Q ss_pred             ccccCcccceEEEEEEeec-----CcEEEEEEecch--hhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEV-----DSVVALKIIKNV--EKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~-----~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      ++||.|+||+||+|.+...     +..||+|++...  ....+.+.+|+++|+++. |+|      |+++++++...+..
T Consensus        43 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~Hpn------Iv~l~~~~~~~~~~  116 (400)
T cd05105          43 RILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLN------IVNLLGACTKSGPI  116 (400)
T ss_pred             heecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCC------eeeEEEEEccCCce
Confidence            6799999999999997543     347999999643  233457889999999996 766      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCC---CchHH-------------------------------------------------
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLP---YSLDQ-------------------------------------------------  100 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~---~~~~~-------------------------------------------------  100 (351)
                      ||||||| +|+|.+++.......   .++..                                                 
T Consensus       117 ~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (400)
T cd05105         117 YIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKE  196 (400)
T ss_pred             EEEEEecCCCcHHHHHHHhhhhhhccccccccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhh
Confidence            9999999 999999997642100   00000                                                 


Q ss_pred             ---------------------HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006         101 ---------------------VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus       101 ---------------------~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                                           ...-..+++  ..+....+++..+..++.|++.||+|||+.+++|+|+|+.|+.+.+  
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~--  272 (400)
T cd05105         197 ASKYSDIQRSNYDRPASYKGSNDSEVKNLL--SDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQ--  272 (400)
T ss_pred             hhhhhhcccCcccccccccCcchhhHHHHH--HhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeC--
Confidence                                 000000111  1122235788888999999999999999999999999999998862  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       273 --------------------------------------------------------------------------------  272 (400)
T cd05105         273 --------------------------------------------------------------------------------  272 (400)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITL  313 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~p  313 (351)
                                   ...+||+|||++.....     ......+++.|+|||.+.+..++.++|+|||||++|++++ |..|
T Consensus       273 -------------~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P  339 (400)
T cd05105         273 -------------GKIVKICDFGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTP  339 (400)
T ss_pred             -------------CCEEEEEeCCcceeccccccccccCCcCCCcceEChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCC
Confidence                         34589999998865321     1123446678999999988889999999999999999996 9999


Q ss_pred             ccccCCCc
Q psy2006         314 MARKTKTK  321 (351)
Q Consensus       314 f~~~~~~~  321 (351)
                      |......+
T Consensus       340 ~~~~~~~~  347 (400)
T cd05105         340 YPGMIVDS  347 (400)
T ss_pred             CcccchhH
Confidence            98765443

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.96  E-value=9.3e-30  Score=234.50  Aligned_cols=193  Identities=22%  Similarity=0.283  Sum_probs=164.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||.|+||.||+|.+..+++.||+|.+.... ...+.+.+|+.+++.++|+|      |+++++.|..+++.|+||||+
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~------i~~~~~~~~~~~~~~lv~e~~   98 (297)
T cd06656          25 EKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPN------IVNYLDSYLVGDELWVVMEYL   98 (297)
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCC------EeeEEEEEecCCEEEEeeccc
Confidence            67999999999999998999999999997532 33456788999999999888      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++...   .+++..+..++.|++.+                       |.|||+.|++|+|+++.|+.+.   
T Consensus        99 ~~~~L~~~~~~~---~~~~~~~~~~~~~l~~~-----------------------L~~LH~~~i~H~dL~p~Nili~---  149 (297)
T cd06656          99 AGGSLTDVVTET---CMDEGQIAAVCRECLQA-----------------------LDFLHSNQVIHRDIKSDNILLG---  149 (297)
T ss_pred             CCCCHHHHHHhC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHEEEC---
Confidence             89999998653   36777788888888777                       9999999999999999999886   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (297)
T cd06656         150 --------------------------------------------------------------------------------  149 (297)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                  ....++|+|||.+......   .....+++.|++||.+.+..++.++|+||+||++|++++|..||..
T Consensus       150 ------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slGvil~~l~tg~~pf~~  217 (297)
T cd06656         150 ------------MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLN  217 (297)
T ss_pred             ------------CCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence                        1346899999987653221   2345678899999999888889999999999999999999999987


Q ss_pred             cCCCc
Q psy2006         317 KTKTK  321 (351)
Q Consensus       317 ~~~~~  321 (351)
                      .+...
T Consensus       218 ~~~~~  222 (297)
T cd06656         218 ENPLR  222 (297)
T ss_pred             CCcch
Confidence            66543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.96  E-value=9.8e-30  Score=232.09  Aligned_cols=190  Identities=18%  Similarity=0.240  Sum_probs=153.1

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh---CCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI---GEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l---~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      .||+|+||+||+|.+..+++.||+|++....    ........|..+++.+   .|++      |+.+++.|...++.|+
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------i~~~~~~~~~~~~~~~   74 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPF------IVCMSYAFHTPDKLSF   74 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCc------EeeeeeeeecCCEEEE
Confidence            4899999999999998899999999996532    1112234454444444   3344      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||+ |++|.+++....  .+++..++.++.|++.+                       +.|||+.+++|+|+++.|+.
T Consensus        75 v~e~~~g~~L~~~l~~~~--~l~~~~~~~~~~ql~~~-----------------------l~~lH~~~i~H~di~p~nil  129 (278)
T cd05606          75 ILDLMNGGDLHYHLSQHG--VFSEAEMRFYAAEIILG-----------------------LEHMHNRFVVYRDLKPANIL  129 (278)
T ss_pred             EEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEcCCCCHHHEE
Confidence            99999 899999887654  57888888888888888                       99999999999999999987


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       130 i~------------------------------------------------------------------------------  131 (278)
T cd05606         130 LD------------------------------------------------------------------------------  131 (278)
T ss_pred             EC------------------------------------------------------------------------------
Confidence            75                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                       ....++|+|||++.... .......|+..|+|||.+.+. .++.++|+||+||+++++++|..
T Consensus       132 -----------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s~G~~l~~l~~g~~  194 (278)
T cd05606         132 -----------------EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHS  194 (278)
T ss_pred             -----------------CCCCEEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCCCCCcccchHhHHHHHHHHHhCCC
Confidence                             13468999999876432 222345788999999998754 67899999999999999999999


Q ss_pred             cccccC
Q psy2006         313 LMARKT  318 (351)
Q Consensus       313 pf~~~~  318 (351)
                      ||....
T Consensus       195 p~~~~~  200 (278)
T cd05606         195 PFRQHK  200 (278)
T ss_pred             CCCCCC
Confidence            998764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=7.8e-30  Score=236.77  Aligned_cols=223  Identities=19%  Similarity=0.238  Sum_probs=162.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||.|+||+||+|.+..+++.||+|.+....    ...+.+..|+++++.++|++      |+++++.+....+.|+|
T Consensus         6 ~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~lv   79 (316)
T cd05574           6 IKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPF------LPTLYASFQTETYLCLV   79 (316)
T ss_pred             eeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCC------chhheeeeecCCEEEEE
Confidence            367999999999999998899999999997542    23456788999999999877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe--
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI--  153 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni--  153 (351)
                      |||+ +++|.+++.......+++..++.++.|++.+                       |.|||+.|++|+|+|+.|+  
T Consensus        80 ~e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dlkp~Nili  136 (316)
T cd05574          80 MDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLA-----------------------LEYLHLLGIVYRDLKPENILL  136 (316)
T ss_pred             EEecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCChHHeEE
Confidence            9999 8899999987655578888888888888888                       9999999999999998876  


Q ss_pred             ------EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         154 ------RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       154 ------~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                            +|+|||++..........      .......                          +..              
T Consensus       137 ~~~~~~~l~dfg~~~~~~~~~~~~------~~~~~~~--------------------------~~~--------------  170 (316)
T cd05574         137 HESGHIMLSDFDLSKQSDVEPPPV------SKALRKG--------------------------SRR--------------  170 (316)
T ss_pred             cCCCCEEEeecchhhccccccccc------ccccccc--------------------------ccc--------------
Confidence                  455666654321110000      0000000                          000              


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                          ..             ..   ......+.+     ..........|+..|+|||.+.+..++.++|+|||||++|++
T Consensus       171 ----~~-------------~~---~~~~~~~~~-----~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l  225 (316)
T cd05574         171 ----SS-------------VN---SIPSETFSE-----EPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEM  225 (316)
T ss_pred             ----cc-------------cc---ccchhhhcc-----cccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHH
Confidence                00             00   000000000     011122345788999999999888889999999999999999


Q ss_pred             ccccccccccCCCcee
Q psy2006         308 YLGITLMARKTKTKYF  323 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~~  323 (351)
                      ++|..||.+.+..+.+
T Consensus       226 ~~g~~pf~~~~~~~~~  241 (316)
T cd05574         226 LYGTTPFKGSNRDETF  241 (316)
T ss_pred             hhCCCCCCCCchHHHH
Confidence            9999999877765544

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.96  E-value=1.6e-29  Score=230.81  Aligned_cols=196  Identities=20%  Similarity=0.303  Sum_probs=161.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEee------CCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDY------HGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~------~~~~~   74 (351)
                      +.||.|+||.||+|.+..+++.||+|++.........+..|+.+++++ .|+|      |++++++|..      ..++|
T Consensus        22 ~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~~~~~~~~~e~~~l~~~~~h~~------i~~~~~~~~~~~~~~~~~~~~   95 (282)
T cd06636          22 EVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTEDEEEEIKLEINMLKKYSHHRN------IATYYGAFIKKSPPGHDDQLW   95 (282)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEEecChHHHHHHHHHHHHHHHhcCCCc------EEEEeeehhcccccCCCCEEE
Confidence            579999999999999999999999999976555556778899999998 4666      9999999863      45899


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++.......+++..+..++.|++.+                       +.|||+.+++|+|+++.|+
T Consensus        96 iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------l~~LH~~~ivH~dl~~~ni  152 (282)
T cd06636          96 LVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRG-----------------------LAHLHAHKVIHRDIKGQNV  152 (282)
T ss_pred             EEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHE
Confidence            999999 7899999987655567777777778888777                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+                                                                            
T Consensus       153 li~~----------------------------------------------------------------------------  156 (282)
T cd06636         153 LLTE----------------------------------------------------------------------------  156 (282)
T ss_pred             EECC----------------------------------------------------------------------------
Confidence            8862                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeee-----cCCCCCccceeeeeeeeE
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l~  305 (351)
                                         ...++|+|||++....   .......|++.|+|||.+.     +..++.++|+|||||++|
T Consensus       157 -------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~DvwslG~~l~  217 (282)
T cd06636         157 -------------------NAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDYRSDIWSLGITAI  217 (282)
T ss_pred             -------------------CCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCcccCcCcCCCcccchhHHHHHHH
Confidence                               3458999999876432   1223467889999999876     345788999999999999


Q ss_pred             eeccccccccccCCCc
Q psy2006         306 ELYLGITLMARKTKTK  321 (351)
Q Consensus       306 ~l~tG~~pf~~~~~~~  321 (351)
                      ++++|..||......+
T Consensus       218 el~~g~~p~~~~~~~~  233 (282)
T cd06636         218 EMAEGAPPLCDMHPMR  233 (282)
T ss_pred             HHHhCCCCccccCHHh
Confidence            9999999997765443

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.96  E-value=6.2e-30  Score=230.59  Aligned_cols=198  Identities=19%  Similarity=0.262  Sum_probs=166.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhh-hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK-YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~-~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +++||.|+||+||+|.+.. ++.+|+|++..... ....+.+|+++++.++|+|      |+++++++...+..++||||
T Consensus        11 ~~~ig~g~~~~vy~~~~~~-~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~lv~e~   83 (261)
T cd05148          11 ERKLGSGYFGEVWEGLWKN-RVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKH------LISLFAVCSVGEPVYIITEL   83 (261)
T ss_pred             hhhhccCCCccEEEeEecC-CCcEEEEeccccchhhHHHHHHHHHHHhcCCCcc------hhheeeeEecCCCeEEEEee
Confidence            3689999999999999866 89999999986533 4567788999999998877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++.......+++..+..++.|++.|                       +.|||++|++|+|+++.|+.+.+ 
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~a-----------------------l~~lH~~~i~h~dl~~~nilv~~-  139 (261)
T cd05148          84 MEKGSLLAFLRSPEGQVLPVASLIDMACQVAEG-----------------------MAYLEEQNSIHRDLAARNILVGE-  139 (261)
T ss_pred             cccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccccCcceEEEcC-
Confidence            9 8899999987655567788888888888888                       99999999999999999998862 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (261)
T cd05148         140 --------------------------------------------------------------------------------  139 (261)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecccc---ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH---STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf  314 (351)
                                    ...++|+|||.+.......   ....++..|++||.+.+..++.++|+|||||+++++++ |..||
T Consensus       140 --------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~DiwslG~~l~~l~~~g~~p~  205 (261)
T cd05148         140 --------------DLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFSTKSDVWSFGILLYEMFTYGQVPY  205 (261)
T ss_pred             --------------CceEEEccccchhhcCCccccccCCCCceEecCHHHHccCCCCchhhHHHHHHHHHHHHcCCCCCC
Confidence                          3468999999886532211   22345668999999988888999999999999999998 89999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      .+.+..+.+
T Consensus       206 ~~~~~~~~~  214 (261)
T cd05148         206 PGMNNHEVY  214 (261)
T ss_pred             CcCCHHHHH
Confidence            887766554

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.96  E-value=1.1e-29  Score=229.75  Aligned_cols=197  Identities=21%  Similarity=0.234  Sum_probs=160.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      .++||+|+||+||+|.+..+ ..||+|++.......+.+.+|+++++.++|++      |+++++.+. ....++||||+
T Consensus        11 ~~~lg~g~~~~v~~~~~~~~-~~valK~~~~~~~~~~~~~~E~~~l~~l~~~~------i~~~~~~~~-~~~~~lv~e~~   82 (262)
T cd05071          11 EVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK------LVQLYAVVS-EEPIYIVTEYM   82 (262)
T ss_pred             eeecCCCCCCcEEEEEecCC-ceEEEEecccCccCHHHHHHHHHHHHhCCCCC------cceEEEEEC-CCCcEEEEEcC
Confidence            36899999999999987544 56999999865444567789999999998877      999998875 45689999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.......+++..+..++.|++.+                       |.|+|+.+++|+|+++.|+.+.+  
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~a-----------------------L~~lH~~~i~H~dl~p~Nill~~--  137 (262)
T cd05071          83 SKGSLLDFLKGEMGKYLRLPQLVDMAAQIASG-----------------------MAYVERMNYVHRDLRAANILVGE--  137 (262)
T ss_pred             CCCcHHHHHhhccccCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccccCcccEEEcC--
Confidence             8899999987544457788888888888888                       99999999999999999998762  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (262)
T cd05071         138 --------------------------------------------------------------------------------  137 (262)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLM  314 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf  314 (351)
                                   ...++|+|||.+.......    ....++..|+|||.+.+..++.++|+||+||++|+++| |..||
T Consensus       138 -------------~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~ellt~g~~p~  204 (262)
T cd05071         138 -------------NLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPY  204 (262)
T ss_pred             -------------CCcEEeccCCceeeccccccccccCCcccceecCHhHhccCCCCchhhHHHHHHHHHHHHcCCCCCC
Confidence                         3468999999886532211    12345568999999988889999999999999999999 89999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      .+.+..+.+
T Consensus       205 ~~~~~~~~~  213 (262)
T cd05071         205 PGMVNREVL  213 (262)
T ss_pred             CCCChHHHH
Confidence            877655543

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.3e-29  Score=228.78  Aligned_cols=197  Identities=18%  Similarity=0.203  Sum_probs=164.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      +.||.|+||.||+|.+ .+++.||+|.+.......+.+.+|+.+++.+.|+|      |+++++++...+..|+||||+ 
T Consensus        12 ~~lg~g~~~~v~~~~~-~~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~~   84 (261)
T cd05068          12 RKLGAGQFGEVWEGLW-NNTTPVAVKTLKPGTMDPKDFLAEAQIMKKLRHPK------LIQLYAVCTLEEPIYIVTELMK   84 (261)
T ss_pred             EEecccCCccEEEEEe-cCCeEEEEEeeCCCcccHHHHHHHHHHHHHCCCCC------ccceeEEEecCCCeeeeeeccc
Confidence            5799999999999996 45678999999765444567888999999999877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.......+++..+..++.|++.+                       +.+||+.|++|+|++++|+.+.+   
T Consensus        85 ~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dl~p~Nil~~~---  138 (261)
T cd05068          85 YGSLLEYLQGGAGRALKLPQLIDMAAQVASG-----------------------MAYLEAQNYIHRDLAARNVLVGE---  138 (261)
T ss_pred             CCcHHHHHhccCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeeccCCcceEEEcC---
Confidence            9999999987654467788888888888887                       99999999999999999998862   


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (261)
T cd05068         139 --------------------------------------------------------------------------------  138 (261)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecccc-ccccc---cceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-STIVS---TRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-~~~~g---t~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                  ...++|+|||++....... ....|   +..|+|||.+.+..++.++|+|||||+++++++ |..||.
T Consensus       139 ------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~  206 (261)
T cd05068         139 ------------NNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNRFSIKSDVWSFGILLTEIVTYGRMPYP  206 (261)
T ss_pred             ------------CCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCCCCchhhHHHHHHHHHHHHhcCCCCCC
Confidence                        3468999999886543211 11122   357999999988889999999999999999999 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+.+
T Consensus       207 ~~~~~~~~  214 (261)
T cd05068         207 GMTNAEVL  214 (261)
T ss_pred             CCCHHHHH
Confidence            87765544

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.96  E-value=1.6e-29  Score=231.82  Aligned_cols=193  Identities=21%  Similarity=0.298  Sum_probs=160.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++.||+|+||.||+|.+..+++.||+|++....  .......+|+.+++.++|+|      |+++++++...++.|+|||
T Consensus        10 ~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~n------i~~~~~~~~~~~~~~lv~e   83 (291)
T cd07870          10 LEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHAN------IVLLHDIIHTKETLTFVFE   83 (291)
T ss_pred             EEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCC------EeEEEEEEecCCeEEEEEe
Confidence            367999999999999998899999999997532  22235678999999999887      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |+++++.+++.... ..+++..++.++.|++.|                       |.|||+.+++|+|+|+.|+.+.  
T Consensus        84 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~-----------------------L~~lH~~~i~H~dlkp~Nil~~--  137 (291)
T cd07870          84 YMHTDLAQYMIQHP-GGLHPYNVRLFMFQLLRG-----------------------LAYIHGQHILHRDLKPQNLLIS--  137 (291)
T ss_pred             cccCCHHHHHHhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCChHHEEEc--
Confidence            99889988876653 356777788888888887                       9999999999999999999876  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (291)
T cd07870         138 --------------------------------------------------------------------------------  137 (291)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                   ....++|+|||++.....   ......+++.|+|||.+.+. .++.++|+|||||+++++++|..||
T Consensus       138 -------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~f  204 (291)
T cd07870         138 -------------YLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSSALDIWGAGCIFIEMLQGQPAF  204 (291)
T ss_pred             -------------CCCcEEEeccccccccCCCCCCCCCccccccccCCceeecCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence                         134689999998764221   22334578899999998764 5788999999999999999999999


Q ss_pred             cccC
Q psy2006         315 ARKT  318 (351)
Q Consensus       315 ~~~~  318 (351)
                      .+.+
T Consensus       205 ~~~~  208 (291)
T cd07870         205 PGVS  208 (291)
T ss_pred             CCch
Confidence            7654

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.96  E-value=4.3e-30  Score=234.60  Aligned_cols=190  Identities=21%  Similarity=0.292  Sum_probs=159.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||.|+||.||+|++..+|+.||+|.+....   .....+.+|+.+++.++|+|      |+++++++...++.++|+|
T Consensus         6 ~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e   79 (284)
T cd07839           6 EKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN------IVRLYDVLHSDKKLTLVFE   79 (284)
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCC------eeeHHHHhccCCceEEEEe
Confidence            67999999999999999999999999997532   22345678999999999877      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |++++|.+++.... ..+++..++.++.|++.|                       |.|||+++++|+|++++|+.+.  
T Consensus        80 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~a-----------------------l~~LH~~~i~H~dl~~~nil~~--  133 (284)
T cd07839          80 YCDQDLKKYFDSCN-GDIDPEIVKSFMFQLLKG-----------------------LAFCHSHNVLHRDLKPQNLLIN--  133 (284)
T ss_pred             cCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEecCCCCHHHEEEc--
Confidence            99889999887653 357888888888888888                       9999999999999999999876  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (284)
T cd07839         134 --------------------------------------------------------------------------------  133 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                   ....++|+|||.+......   .....+++.|+|||.+.+. .++.++|+||+||++|+|+||..||
T Consensus       134 -------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~tg~~p~  200 (284)
T cd07839         134 -------------KNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPL  200 (284)
T ss_pred             -------------CCCcEEECccchhhccCCCCCCcCCCccccCCcChHHHhCCcccCcHHHHHHHHHHHHHHHhcCCCC
Confidence                         2356899999988653222   2334568899999998764 4688999999999999999988886


Q ss_pred             cc
Q psy2006         315 AR  316 (351)
Q Consensus       315 ~~  316 (351)
                      ..
T Consensus       201 ~~  202 (284)
T cd07839         201 FP  202 (284)
T ss_pred             cC
Confidence            43

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG1151|consensus

Probab=99.96  E-value=5.1e-30  Score=234.37  Aligned_cols=218  Identities=22%  Similarity=0.317  Sum_probs=174.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecc--------hhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKN--------VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~--------~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-~   72 (351)
                      -+||+|+|+.||+|.|..-.++||+|+-..        ...+.+.+.+|-+|.+.|.|+.      ||++||+|..+. .
T Consensus       469 hLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpR------IVKlYDyfslDtds  542 (775)
T KOG1151|consen  469 HLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPR------IVKLYDYFSLDTDS  542 (775)
T ss_pred             HHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcce------eeeeeeeeeecccc
Confidence            469999999999999999999999999732        2356678889999999999888      999999999776 7


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc--cccccccC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK--KREVRRVR  149 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~--~i~h~d~k  149 (351)
                      +|-|+||| |.+|.=+++..+  .+++..++.|+.|+..+                       |.||.+.  .|+|-|+|
T Consensus       543 FCTVLEYceGNDLDFYLKQhk--lmSEKEARSIiMQiVnA-----------------------L~YLNEikpPIIHYDLK  597 (775)
T KOG1151|consen  543 FCTVLEYCEGNDLDFYLKQHK--LMSEKEARSIIMQIVNA-----------------------LKYLNEIKPPIIHYDLK  597 (775)
T ss_pred             ceeeeeecCCCchhHHHHhhh--hhhHHHHHHHHHHHHHH-----------------------HHHHhccCCCeeeeccC
Confidence            99999999 778888888876  58899999999999988                       9999875  48999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      |+||.|.+           .                                                            
T Consensus       598 PgNILLv~-----------G------------------------------------------------------------  606 (775)
T KOG1151|consen  598 PGNILLVN-----------G------------------------------------------------------------  606 (775)
T ss_pred             CccEEEec-----------C------------------------------------------------------------
Confidence            99999883           0                                                            


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceecc----------ccccccccceeeCceeeecC----CCCCcc
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHYRAPEVILEL----GWAQPC  295 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~----~~~~~~  295 (351)
                                           ..-+.+||+|||++.+...          ..+..+||-+|++||++.-.    ..+.++
T Consensus       607 ---------------------tacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKV  665 (775)
T KOG1151|consen  607 ---------------------TACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKV  665 (775)
T ss_pred             ---------------------cccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcceeecCCCCCccccce
Confidence                                 1236799999999876321          12457899999999998733    358999


Q ss_pred             ceeeeeeeeEeecccccccccc-CCCceeee------cccCCcccccccccccccCcc
Q psy2006         296 DVWSIGCIIFELYLGITLMARK-TKTKYFYH------GKLDWDEKGTAGRYVRENCKP  346 (351)
Q Consensus       296 DiwslG~~l~~l~tG~~pf~~~-~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  346 (351)
                      |+||+|+++|..+.|+-||-.. +..+++.+      ....|+.++.    |+.+||+
T Consensus       666 DVWSvGVIFyQClYGrKPFGhnqsQQdILqeNTIlkAtEVqFP~KPv----VsseAka  719 (775)
T KOG1151|consen  666 DVWSVGVIFYQCLYGRKPFGHNQSQQDILQENTILKATEVQFPPKPV----VSSEAKA  719 (775)
T ss_pred             eeEeeehhhhhhhccCCCCCCchhHHHHHhhhchhcceeccCCCCCc----cCHHHHH
Confidence            9999999999999999999654 44455432      3445665543    4455443

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.2e-29  Score=228.35  Aligned_cols=196  Identities=16%  Similarity=0.207  Sum_probs=162.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      +.||+|+||.||+|.+. +++.+|+|++.........+.+|+++++.+.|+|      |+++++++...+..++||||+ 
T Consensus        10 ~~lg~G~~~~v~~~~~~-~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05059          10 KELGSGQFGVVHLGKWR-GKIDVAIKMIREGAMSEDDFIEEAKVMMKLSHPN------LVQLYGVCTKQRPIFIVTEYMA   82 (256)
T ss_pred             hhhccCCCceEEEeEec-CCccEEEEEeccCCCCHHHHHHHHHHHHhCCCCC------EEEEEEEEcCCCceEEEEecCC
Confidence            67999999999999874 5778999999754444456788999999999877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++..... .+++..+..++.|++.+                       +.|||+++++|||+++.|+.+.    
T Consensus        83 ~~~L~~~l~~~~~-~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~i~H~dl~p~ni~i~----  134 (256)
T cd05059          83 NGCLLNYLRERKG-KLGTEWLLDMCSDVCEA-----------------------MEYLESNGFIHRDLAARNCLVG----  134 (256)
T ss_pred             CCCHHHHHHhccc-CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccccccHhhEEEC----
Confidence            8999999987542 57888888888888888                       9999999999999999999876    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (256)
T cd05059         135 --------------------------------------------------------------------------------  134 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecccc-ccc---cccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-STI---VSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-~~~---~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ..+.++|+|||++....... ...   .++..|+|||.+.+..++.++|+|||||++|++++ |..||.
T Consensus       135 -----------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  203 (256)
T cd05059         135 -----------EDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSKSDVWSFGVLMWEVFSEGKMPYE  203 (256)
T ss_pred             -----------CCCcEEECCcccceecccccccccCCCCCCccccCHHHhccCCCCchhhHHHHHHHHHHHhccCCCCCC
Confidence                       23468999999886532211 111   22347999999988889999999999999999998 899998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      ..+..+..
T Consensus       204 ~~~~~~~~  211 (256)
T cd05059         204 RFSNSEVV  211 (256)
T ss_pred             CCCHHHHH
Confidence            77665544

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.96  E-value=1.4e-29  Score=228.33  Aligned_cols=197  Identities=20%  Similarity=0.258  Sum_probs=163.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +++||.|+||+||+|.+ .+++.||+|.+.......+.+.+|+.+++.+.|+|      |+++++.+. .+..++||||+
T Consensus        11 ~~~ig~G~~g~v~~~~~-~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05067          11 VKKLGAGQFGEVWMGYY-NGHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPR------LVRLYAVVT-QEPIYIITEYM   82 (260)
T ss_pred             eeeeccCccceEEeeec-CCCceEEEEEecCCCCcHHHHHHHHHHHHhcCCcC------eeeEEEEEc-cCCcEEEEEcC
Confidence            36899999999999996 46788999999865544567889999999999877      999998874 56799999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.......+++..+..++.|++.+                       |.|||+.|++|+|+++.|+.+.+  
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~a-----------------------l~~LH~~~i~H~dl~p~ni~i~~--  137 (260)
T cd05067          83 ENGSLVDFLKTPEGIKLTINKLIDMAAQIAEG-----------------------MAFIERKNYIHRDLRAANILVSE--  137 (260)
T ss_pred             CCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHhcCCeecccccHHhEEEcC--
Confidence             8999999987665677888888888888888                       99999999999999999998762  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (260)
T cd05067         138 --------------------------------------------------------------------------------  137 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc-c---cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE-H---HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLM  314 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf  314 (351)
                                   ...++|+|||.+..... .   .....++..|+|||.+.+..++.++|+||||++++++++ |..||
T Consensus       138 -------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~el~~~g~~p~  204 (260)
T cd05067         138 -------------TLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTYGRIPY  204 (260)
T ss_pred             -------------CCCEEEccCcceeecCCCCcccccCCcccccccCHHHhccCCcCcccchHHHHHHHHHHHhCCCCCC
Confidence                         34689999998865331 1   122344568999999988888999999999999999998 99999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      .+.+..+..
T Consensus       205 ~~~~~~~~~  213 (260)
T cd05067         205 PGMTNPEVI  213 (260)
T ss_pred             CCCChHHHH
Confidence            877655443

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.96  E-value=2.1e-29  Score=229.52  Aligned_cols=192  Identities=18%  Similarity=0.266  Sum_probs=161.7

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ||+|+||+||+|.+..+++.||+|++....    .....+..|+.+++.++|++      |+.+++.|+..++.|+||||
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~lv~e~   74 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRF------IVSLAYAFETKDDLCLVMTL   74 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCC------EeeeeeEEecCCeEEEEEec
Confidence            799999999999998999999999996432    22334567999999998777      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++.......+++..+..++.|++.+                       |.|||+.|++|+|+++.|+.+.+ 
T Consensus        75 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~ql~~~-----------------------l~~lH~~~i~H~di~p~Nil~~~-  130 (277)
T cd05577          75 MNGGDLKYHIYNVGEPGFPEARAIFYAAQIICG-----------------------LEHLHQRRIVYRDLKPENVLLDD-  130 (277)
T ss_pred             CCCCcHHHHHHHcCcCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCHHHEEECC-
Confidence            9 8999999987664567888888888888888                       99999999999999999998761 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       131 --------------------------------------------------------------------------------  130 (277)
T cd05577         131 --------------------------------------------------------------------------------  130 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                    ...++|+|||.+.....  ......++..|++||.+.+..++.++|+||+||+++++++|..||..
T Consensus       131 --------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  196 (277)
T cd05577         131 --------------HGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTLYEMIAGRSPFRQ  196 (277)
T ss_pred             --------------CCCEEEccCcchhhhccCCccccccCCCCcCCHHHhcCCCCCchhhhHHHHHHHHHHhhCCCCCCC
Confidence                          34689999998764321  22334567899999999888889999999999999999999999977


Q ss_pred             cCC
Q psy2006         317 KTK  319 (351)
Q Consensus       317 ~~~  319 (351)
                      .+.
T Consensus       197 ~~~  199 (277)
T cd05577         197 RKE  199 (277)
T ss_pred             Ccc
Confidence            554

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.96  E-value=2.1e-29  Score=232.94  Aligned_cols=197  Identities=23%  Similarity=0.331  Sum_probs=161.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||.|+||.||++.+..+++.||+|.+....    ...+.+..|+++++.++|+|      |+++++.+..++++|+|
T Consensus         6 ~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~~~~~lv   79 (305)
T cd05609           6 IKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPF------VVSMFCSFETKRHLCMV   79 (305)
T ss_pred             eeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCC------eeeeEEEEecCCEEEEE
Confidence            367999999999999999999999999997542    22345678999999998877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ |++|.+++....  .+++..+..++.|++.|                       +.|+|+.+++|+|+++.|+.+
T Consensus        80 ~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dl~p~NIll  134 (305)
T cd05609          80 MEYVEGGDCATLLKNIG--ALPVDMARMYFAETVLA-----------------------LEYLHNYGIVHRDLKPDNLLI  134 (305)
T ss_pred             EecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCchHHEEE
Confidence            9999 889999997764  57888888888888888                       999999999999999999876


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       135 ~~------------------------------------------------------------------------------  136 (305)
T cd05609         135 TS------------------------------------------------------------------------------  136 (305)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            52                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceec------------------cccccccccceeeCceeeecCCCCCccce
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD------------------EHHSTIVSTRHYRAPEVILELGWAQPCDV  297 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~------------------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  297 (351)
                                       .+.++++|||++....                  .......++..|+|||.+.+..++.++|+
T Consensus       137 -----------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  199 (305)
T cd05609         137 -----------------MGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTPEYIAPEVILRQGYGKPVDW  199 (305)
T ss_pred             -----------------CCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCccccCchhccCCCCCchhhH
Confidence                             2345666666553200                  00112356788999999988889999999


Q ss_pred             eeeeeeeEeeccccccccccCCCcee
Q psy2006         298 WSIGCIIFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       298 wslG~~l~~l~tG~~pf~~~~~~~~~  323 (351)
                      |||||++|++++|..||.+.+..+.+
T Consensus       200 ~slG~vl~el~~g~~pf~~~~~~~~~  225 (305)
T cd05609         200 WAMGIILYEFLVGCVPFFGDTPEELF  225 (305)
T ss_pred             HHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence            99999999999999999887766544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.96  E-value=9.2e-30  Score=234.46  Aligned_cols=192  Identities=22%  Similarity=0.291  Sum_probs=163.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||.|+||+||+|++..+++.||+|.+.... ...+.+.+|+.+++.++|+|      |+++++.|...++.++|+||+
T Consensus        25 ~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e~~   98 (296)
T cd06655          25 EKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPN------IVNFLDSFLVGDELFVVMEYL   98 (296)
T ss_pred             EEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCc------eeeeeeeEecCceEEEEEEec
Confidence            57999999999999999999999999996532 33466788999999999887      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++...   .+++..+..++.|++.+                       +.|||+.|++|+|+++.|+.+.   
T Consensus        99 ~~~~L~~~~~~~---~l~~~~~~~i~~~l~~a-----------------------l~~LH~~~i~H~dL~p~Nili~---  149 (296)
T cd06655          99 AGGSLTDVVTET---CMDEAQIAAVCRECLQA-----------------------LEFLHANQVIHRDIKSDNVLLG---  149 (296)
T ss_pred             CCCcHHHHHHhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHEEEC---
Confidence             89999988654   47788888888888887                       9999999999999999999886   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (296)
T cd06655         150 --------------------------------------------------------------------------------  149 (296)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                  ..+.++|+|||++.....   ......+++.|+|||.+.+..++.++|+|||||++|++++|..||..
T Consensus       150 ------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~~lltg~~pf~~  217 (296)
T cd06655         150 ------------MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYLN  217 (296)
T ss_pred             ------------CCCCEEEccCccchhcccccccCCCcCCCccccCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                        134689999998764322   12345678899999999888889999999999999999999999987


Q ss_pred             cCCC
Q psy2006         317 KTKT  320 (351)
Q Consensus       317 ~~~~  320 (351)
                      .+..
T Consensus       218 ~~~~  221 (296)
T cd06655         218 ENPL  221 (296)
T ss_pred             CCHH
Confidence            6543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.96  E-value=2.3e-29  Score=229.25  Aligned_cols=195  Identities=25%  Similarity=0.358  Sum_probs=164.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||.|+||.||+|.+..+++.||+|++....  .....+.+|+.+++.+.|++      |+++++.+..+.+.|+|||
T Consensus         9 ~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e   82 (277)
T cd06640           9 LERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY------VTKYYGSYLKGTKLWIIME   82 (277)
T ss_pred             hhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCC------EeeEEEEEEECCEEEEEEe
Confidence            367999999999999998899999999997532  33456788999999998877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++...   ++++..+..++.|++.+                       ++|+|+.+++|+|++++|+.+.+
T Consensus        83 ~~~~~~L~~~i~~~---~l~~~~~~~~~~~l~~~-----------------------l~~lh~~~ivH~dl~p~Nil~~~  136 (277)
T cd06640          83 YLGGGSALDLLRAG---PFDEFQIATMLKEILKG-----------------------LDYLHSEKKIHRDIKAANVLLSE  136 (277)
T ss_pred             cCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccCcCCChhhEEEcC
Confidence            99 88999998653   47777788888888777                       99999999999999999998862


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (277)
T cd06640         137 --------------------------------------------------------------------------------  136 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                     ...++++|||++.....   ......++..|+|||.+.+..++.++|+|||||++|++++|..||
T Consensus       137 ---------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Dv~slG~il~el~tg~~p~  201 (277)
T cd06640         137 ---------------QGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPN  201 (277)
T ss_pred             ---------------CCCEEEcccccceeccCCccccccccCcccccCHhHhccCCCccHHHHHHHHHHHHHHHHCCCCC
Confidence                           34589999998755322   223346788899999998888899999999999999999999999


Q ss_pred             cccCCCce
Q psy2006         315 ARKTKTKY  322 (351)
Q Consensus       315 ~~~~~~~~  322 (351)
                      ...+..+.
T Consensus       202 ~~~~~~~~  209 (277)
T cd06640         202 SDMHPMRV  209 (277)
T ss_pred             CCcChHhH
Confidence            87665443

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.96  E-value=2.4e-29  Score=232.40  Aligned_cols=198  Identities=18%  Similarity=0.199  Sum_probs=156.8

Q ss_pred             ccccCcccceEEEEEEeecCc--EEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS--VVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~--~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||.|+||.||+|.++.++.  .+|+|.+...  ......+.+|+.++.++ +|+|      |+++++++...+..++|
T Consensus        13 ~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~------iv~~~~~~~~~~~~~lv   86 (303)
T cd05088          13 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPN------IINLLGACEHRGYLYLA   86 (303)
T ss_pred             eeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCC------cceEEEEECCCCCceEE
Confidence            569999999999999887775  4577776532  23345677899999999 6776      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc
Q psy2006          77 FEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK  141 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  141 (351)
                      |||+ +++|.+++.....              ..+++..++.++.|++.|                       ++|||++
T Consensus        87 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~a-----------------------l~~LH~~  143 (303)
T cd05088          87 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARG-----------------------MDYLSQK  143 (303)
T ss_pred             EEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHH-----------------------HHHHHhC
Confidence            9999 8999999986532              134555666666666666                       9999999


Q ss_pred             cccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         142 KREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       142 ~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                      |++|||+|+.|+.+.                                                                 
T Consensus       144 gi~H~dlkp~Nili~-----------------------------------------------------------------  158 (303)
T cd05088         144 QFIHRDLAARNILVG-----------------------------------------------------------------  158 (303)
T ss_pred             CccccccchheEEec-----------------------------------------------------------------
Confidence            999999999999886                                                                 


Q ss_pred             CCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccc--cccccceeeCceeeecCCCCCccceee
Q psy2006         222 DKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWS  299 (351)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~--~~~gt~~y~aPE~~~~~~~~~~~Diws  299 (351)
                                                    ....++|+|||++........  ...++..|+|||.+.+..++.++|+||
T Consensus       159 ------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  208 (303)
T cd05088         159 ------------------------------ENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWS  208 (303)
T ss_pred             ------------------------------CCCcEEeCccccCcccchhhhcccCCCcccccCHHHHhccCCcccccchh
Confidence                                          234689999998854221111  123356799999998888899999999


Q ss_pred             eeeeeEeecc-ccccccccCCCcee
Q psy2006         300 IGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       300 lG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      |||++++++| |..||.+.+..+.+
T Consensus       209 lG~il~ellt~g~~p~~~~~~~~~~  233 (303)
T cd05088         209 YGVLLWEIVSLGGTPYCGMTCAELY  233 (303)
T ss_pred             hhhHHHHHHhcCCCCcccCChHHHH
Confidence            9999999998 99999877665544

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.96  E-value=3.2e-29  Score=226.67  Aligned_cols=193  Identities=21%  Similarity=0.274  Sum_probs=161.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||.|+||.||+|++..+++.||+|.+...    ......+.+|+.+++.++|++      |+++++.+...++.++|+
T Consensus         8 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           8 KKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPN------VIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             eeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcc------eeeeeeeEEECCeEEEEE
Confidence            6799999999999999999999999988542    233446778999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcC--CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          78 EIL-GLSVFDFLKENN--YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~--~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||+ +++|.+++....  ...+++..+..++.|++.|                       |.|||+++++|+|+++.|+.
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------l~~LH~~~i~H~dl~~~nil  138 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSA-----------------------VEHMHSRRVMHRDIKPANVF  138 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHH-----------------------HHHHhhCCeeCCCCCHHHEE
Confidence            999 789999886432  2346777777777777777                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       139 ~~------------------------------------------------------------------------------  140 (267)
T cd08228         139 IT------------------------------------------------------------------------------  140 (267)
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                       ....++|+|||.+.....   ......|++.|+|||.+.+..++.++|+||+|+++|++++|.
T Consensus       141 -----------------~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~el~~g~  203 (267)
T cd08228         141 -----------------ATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ  203 (267)
T ss_pred             -----------------CCCCEEECccccceeccchhHHHhcCCCCccccChhhhccCCCCchhhHHHHHHHHHHHhcCC
Confidence                             134589999998765332   122456788999999998888899999999999999999999


Q ss_pred             ccccccC
Q psy2006         312 TLMARKT  318 (351)
Q Consensus       312 ~pf~~~~  318 (351)
                      .||....
T Consensus       204 ~p~~~~~  210 (267)
T cd08228         204 SPFYGDK  210 (267)
T ss_pred             CCCcccc
Confidence            9997654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.9e-29  Score=227.45  Aligned_cols=196  Identities=20%  Similarity=0.288  Sum_probs=159.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhh----hhHHHHHHHHHHHH-hCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK----YREAARLEINALQK-IGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~----~~~~~~~E~~~l~~-l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++.||.|+||.||+|.+..+++.||+|++.+...    .......|..++.. ..|+|      |+++++.+..+++.|+
T Consensus         1 ~~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------i~~~~~~~~~~~~~~l   74 (260)
T cd05611           1 LKPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPY------VAKLYYSFQSKDYLYL   74 (260)
T ss_pred             CccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCC------eeeeeeeEEcCCeEEE
Confidence            4789999999999999988999999999975321    11223445444433 34555      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |+||+ +++|.++++...  .+++..+..++.|++.|                       |.|||+.+++|+|+++.|+.
T Consensus        75 v~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~a-----------------------L~~lH~~~i~H~dl~p~nil  129 (260)
T cd05611          75 VMEYLNGGDCASLIKTLG--GLPEDWAKQYIAEVVLG-----------------------VEDLHQRGIIHRDIKPENLL  129 (260)
T ss_pred             EEeccCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHeE
Confidence            99999 899999998764  57888888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       130 ~~------------------------------------------------------------------------------  131 (260)
T cd05611         130 ID------------------------------------------------------------------------------  131 (260)
T ss_pred             EC------------------------------------------------------------------------------
Confidence            76                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                       ....++|+|||++..... .....+++.|++||.+.+..++.++|+||+|++++++++|..||
T Consensus       132 -----------------~~~~~~l~dfg~~~~~~~-~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~  193 (260)
T cd05611         132 -----------------QTGHLKLTDFGLSRNGLE-NKKFVGTPDYLAPETILGVGDDKMSDWWSLGCVIFEFLFGYPPF  193 (260)
T ss_pred             -----------------CCCcEEEeecccceeccc-cccCCCCcCccChhhhcCCCCcchhhhHHHHHHHHHHHHCCCCC
Confidence                             234689999998765332 23456788999999998887899999999999999999999999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      ...+..+.+
T Consensus       194 ~~~~~~~~~  202 (260)
T cd05611         194 HAETPDAVF  202 (260)
T ss_pred             CCCCHHHHH
Confidence            887766544

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.96  E-value=2.7e-29  Score=225.60  Aligned_cols=198  Identities=19%  Similarity=0.278  Sum_probs=166.5

Q ss_pred             ccccCcccceEEEEEEeec---CcEEEEEEecchhhh--hHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEV---DSVVALKIIKNVEKY--REAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~---~~~vAiK~~~~~~~~--~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||.|+||.||+|.+...   +..||+|++......  .+.+.+|+++++.++|++      |+++++++.....+++|
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~~~~~lv   74 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPN------VVRLLGVCTEEEPLYLV   74 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCC------hheeeeeecCCCceEEE
Confidence            5799999999999998766   899999999865332  567789999999999777      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcC-------CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccccc
Q psy2006          77 FEIL-GLSVFDFLKENN-------YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV  148 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~-------~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~  148 (351)
                      |||+ +++|.+++....       ...+++..+..++.|++.|                       |.+||+++++|+|+
T Consensus        75 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-----------------------l~~lH~~~i~H~di  131 (262)
T cd00192          75 LEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKG-----------------------MEYLASKKFVHRDL  131 (262)
T ss_pred             EEeccCCcHHHHHhhccccccccccccCCHHHHHHHHHHHHHH-----------------------HHHHHcCCcccCcc
Confidence            9999 999999998762       1357777788888877777                       99999999999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      ++.|+.+.+                                                                       
T Consensus       132 ~p~nili~~-----------------------------------------------------------------------  140 (262)
T cd00192         132 AARNCLVGE-----------------------------------------------------------------------  140 (262)
T ss_pred             CcceEEECC-----------------------------------------------------------------------
Confidence            999998872                                                                       


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeee
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCI  303 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~  303 (351)
                                              ...++|+|||.+......     .....+++.|+|||.+....++.++|+||+||+
T Consensus       141 ------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  196 (262)
T cd00192         141 ------------------------DLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESLKDGIFTSKSDVWSFGVL  196 (262)
T ss_pred             ------------------------CCcEEEcccccccccccccccccccCCCcCccccCHHHhccCCcchhhccHHHHHH
Confidence                                    356899999988753321     234566789999999988888999999999999


Q ss_pred             eEeecc-ccccccccCCCcee
Q psy2006         304 IFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       304 l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      ++++++ |..||...+..+.+
T Consensus       197 l~~l~~~g~~p~~~~~~~~~~  217 (262)
T cd00192         197 LWEIFTLGATPYPGLSNEEVL  217 (262)
T ss_pred             HHHHHhcCCCCCCCCCHHHHH
Confidence            999998 69999887655543

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.96  E-value=1.8e-29  Score=228.23  Aligned_cols=193  Identities=24%  Similarity=0.327  Sum_probs=160.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||.|+||+||+|.+ .+++.+|+|.+....       .....+.+|+.+++.++|+|      |+++++++...+..|
T Consensus         6 ~~ig~g~~~~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~   78 (265)
T cd06631           6 EVLGKGAYGTVYCGLT-NQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVN------IVQYLGTCLDDNTIS   78 (265)
T ss_pred             ceEeccCCeEEEEEEE-cCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCC------EeeEeeEeecCCeEE
Confidence            6799999999999986 588999999986431       22345788999999999877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +|+||+ +++|.+++.+..  .+++..+..++.|++.+                       |+|||+.+++|+|+++.|+
T Consensus        79 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl~p~ni  133 (265)
T cd06631          79 IFMEFVPGGSISSILNRFG--PLPEPVFCKYTKQILDG-----------------------VAYLHNNCVVHRDIKGNNV  133 (265)
T ss_pred             EEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCcCHHhE
Confidence            999999 889999997754  56787888888888777                       9999999999999999998


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+                                                                            
T Consensus       134 l~~~----------------------------------------------------------------------------  137 (265)
T cd06631         134 MLMP----------------------------------------------------------------------------  137 (265)
T ss_pred             EECC----------------------------------------------------------------------------
Confidence            8762                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceec---------cccccccccceeeCceeeecCCCCCccceeeeeeee
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---------EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCII  304 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l  304 (351)
                                         ...++|+|||.+....         .......|+..|+|||.+.+..++.++|+||+||++
T Consensus       138 -------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~  198 (265)
T cd06631         138 -------------------NGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTV  198 (265)
T ss_pred             -------------------CCeEEeccchhhHhhhhccccccccccccccCCCccccChhhhcCCCCcchhhHHHHHHHH
Confidence                               3457888888765321         112345678899999999888889999999999999


Q ss_pred             EeeccccccccccCCCc
Q psy2006         305 FELYLGITLMARKTKTK  321 (351)
Q Consensus       305 ~~l~tG~~pf~~~~~~~  321 (351)
                      +++++|..||...+..+
T Consensus       199 ~~l~~g~~p~~~~~~~~  215 (265)
T cd06631         199 FEMATGKPPLASMDRLA  215 (265)
T ss_pred             HHHHhCCCccccCChHH
Confidence            99999999998765443

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=2e-29  Score=226.76  Aligned_cols=196  Identities=18%  Similarity=0.233  Sum_probs=166.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      +.||.|+||.||+|.+  .++.||+|.+.......+.+.+|+.+++.+.|++      |+++++++......++||||+ 
T Consensus        12 ~~ig~g~~g~v~~~~~--~~~~v~iK~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~v~e~~~   83 (256)
T cd05039          12 ATIGKGEFGDVMLGDY--RGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPN------LVQLLGVVLQGNPLYIVTEYMA   83 (256)
T ss_pred             eeeecCCCceEEEEEe--cCcEEEEEEeccchhHHHHHHHHHHHHHhcCCcc------eeeeEEEEcCCCCeEEEEEecC
Confidence            5799999999999995  5899999999875544567889999999999877      999999999989999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.++++......+++..++.++.|++.+                       |.|||+++++|+|++++|+.+.    
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~lh~~~i~H~di~p~Nili~----  136 (256)
T cd05039          84 KGSLVDYLRSRGRAVITLAQQLGFALDVCEG-----------------------MEYLEEKNFVHRDLAARNVLVS----  136 (256)
T ss_pred             CCcHHHHHHhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccchhcccceEEEe----
Confidence            7899999987764567888888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (256)
T cd05039         137 --------------------------------------------------------------------------------  136 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccCC
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKTK  319 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~~  319 (351)
                                 ..+.++|+|||.+...........++..|+|||.+....++.++|+|||||+++++++ |..||...+.
T Consensus       137 -----------~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~  205 (256)
T cd05039         137 -----------EDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPL  205 (256)
T ss_pred             -----------CCCCEEEcccccccccccccccCCCcccccCchhhcCCcCCcHHHHHHHHHHHHHHHhcCCCCCCCCCH
Confidence                       2356899999988765433333444567999999988888999999999999999997 9999987765


Q ss_pred             Ccee
Q psy2006         320 TKYF  323 (351)
Q Consensus       320 ~~~~  323 (351)
                      .+..
T Consensus       206 ~~~~  209 (256)
T cd05039         206 KDVV  209 (256)
T ss_pred             HHHH
Confidence            5443

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3e-29  Score=227.95  Aligned_cols=193  Identities=23%  Similarity=0.323  Sum_probs=165.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||.|+||.||+|++..+++.||+|++....  .....+.+|+++++.+.|+|      |++++++|..+...|+|+||
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           7 ECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPY------ITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             hhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCC------eeeeeEEEEECCeEEEEEEe
Confidence            57999999999999999999999999997542  23356788999999999877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++...   ++++..+..++.|++.+                       +.|||+++++|+|+++.|+.+.  
T Consensus        81 ~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~-----------------------l~~lh~~~i~h~dl~p~ni~i~--  132 (274)
T cd06609          81 CGGGSCLDLLKPG---KLDETYIAFILREVLLG-----------------------LEYLHEEGKIHRDIKAANILLS--  132 (274)
T ss_pred             eCCCcHHHHHhhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCHHHEEEC--
Confidence            9 88999998765   57888888888888888                       9999999999999999999886  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       133 --------------------------------------------------------------------------------  132 (274)
T cd06609         133 --------------------------------------------------------------------------------  132 (274)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   ....++|+|||.+.....   ......+++.|+|||.+.+..++.++|+||+||++|+++||..||.
T Consensus       133 -------------~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~sDv~slG~il~~l~tg~~p~~  199 (274)
T cd06609         133 -------------EEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWSLGITAIELAKGEPPLS  199 (274)
T ss_pred             -------------CCCCEEEcccccceeecccccccccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHhCCCCcc
Confidence                         235689999998866432   2344677889999999988889999999999999999999999998


Q ss_pred             ccCCCc
Q psy2006         316 RKTKTK  321 (351)
Q Consensus       316 ~~~~~~  321 (351)
                      ..+..+
T Consensus       200 ~~~~~~  205 (274)
T cd06609         200 DLHPMR  205 (274)
T ss_pred             cCchHH
Confidence            765443

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.96  E-value=2.8e-29  Score=226.44  Aligned_cols=197  Identities=21%  Similarity=0.246  Sum_probs=162.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +++||.|+||.||+|.+ .++..||+|.+.......+.+.+|+.+++.++|++      |+++++++. ....++||||+
T Consensus        11 ~~~ig~g~~~~v~~~~~-~~~~~~~~k~~~~~~~~~~~~~~E~~~l~~l~~~~------i~~~~~~~~-~~~~~lv~e~~   82 (260)
T cd05070          11 IKKLGNGQFGEVWMGTW-NGNTKVAVKTLKPGTMSPESFLEEAQIMKKLRHDK------LVQLYAVVS-EEPIYIVTEYM   82 (260)
T ss_pred             hheeccccCceEEEEEe-cCCceeEEEEecCCCCCHHHHHHHHHHHHhcCCCc------eEEEEeEEC-CCCcEEEEEec
Confidence            36899999999999986 46677999999865444567889999999999887      999999875 45789999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.......+++..+..++.|++.+                       |.|||+.+++|+|+++.|+.+.+  
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~a-----------------------l~~lH~~~i~H~di~p~Nili~~--  137 (260)
T cd05070          83 SKGSLLDFLKDGEGRALKLPNLVDMAAQVAAG-----------------------MAYIERMNYIHRDLRSANILVGD--  137 (260)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCccceEEEeC--
Confidence             8899999987654567888888888888888                       99999999999999999998872  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (260)
T cd05070         138 --------------------------------------------------------------------------------  137 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLM  314 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf  314 (351)
                                   ...++|+|||.+.......    ....++..|+|||.+.+..++.++|+||||+++|++++ |..||
T Consensus       138 -------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~  204 (260)
T cd05070         138 -------------GLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPY  204 (260)
T ss_pred             -------------CceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCCcchhhhHHHHHHHHHHHhcCCCCC
Confidence                         3468999999886532211    12234567999999888888999999999999999999 99999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      .+.+..+.+
T Consensus       205 ~~~~~~~~~  213 (260)
T cd05070         205 PGMNNREVL  213 (260)
T ss_pred             CCCCHHHHH
Confidence            887655544

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.96  E-value=2.1e-29  Score=234.10  Aligned_cols=195  Identities=15%  Similarity=0.201  Sum_probs=157.6

Q ss_pred             CccccCcccceEEEEEEeecCc----EEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDS----VVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~----~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++.||+|+||+||+|.+..+++    .||+|++...  ....+.+.+|+.+++.+.|+|      |+++++++... ..+
T Consensus        12 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~~~g~~~~~-~~~   84 (316)
T cd05108          12 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH------VCRLLGICLTS-TVQ   84 (316)
T ss_pred             eeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC------CCeEEEEEcCC-Cce
Confidence            3679999999999999866655    4899998643  234567788999999999888      99999998764 577


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +|+||+ +|+|.+++.... ..++...+..++.|++.|                       |+|||+++++|||+|+.|+
T Consensus        85 ~v~e~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------L~~LH~~~iiH~dlkp~Ni  140 (316)
T cd05108          85 LITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKG-----------------------MNYLEERRLVHRDLAARNV  140 (316)
T ss_pred             eeeecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHH-----------------------HHHHHhcCeeccccchhhe
Confidence            999999 999999998754 246777777777777777                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+                                                                            
T Consensus       141 ll~~----------------------------------------------------------------------------  144 (316)
T cd05108         141 LVKT----------------------------------------------------------------------------  144 (316)
T ss_pred             EecC----------------------------------------------------------------------------
Confidence            8862                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecccc-----ccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                         ...+||+|||++.......     ....++..|+|||.+.+..++.++|+|||||++|+++
T Consensus       145 -------------------~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slGv~l~el~  205 (316)
T cd05108         145 -------------------PQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELM  205 (316)
T ss_pred             -------------------CCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhhhHHHHHHHHHHH
Confidence                               3458999999987532211     1223356899999999889999999999999999998


Q ss_pred             c-ccccccccCCCc
Q psy2006         309 L-GITLMARKTKTK  321 (351)
Q Consensus       309 t-G~~pf~~~~~~~  321 (351)
                      + |..||.+.+..+
T Consensus       206 t~g~~p~~~~~~~~  219 (316)
T cd05108         206 TFGSKPYDGIPASE  219 (316)
T ss_pred             cCCCCCCCCCCHHH
Confidence            7 999998766544

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.96  E-value=3.1e-29  Score=226.76  Aligned_cols=192  Identities=22%  Similarity=0.340  Sum_probs=163.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||.|+||.||+|.+..+++.||+|++....       ...+.+.+|++++++++|+|      |+++++++...++.+
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~   79 (268)
T cd06630           6 QQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPH------IIRMLGATCEDSHFN   79 (268)
T ss_pred             ceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCc------eehhhceeccCCeEE
Confidence            57999999999999999999999999996422       23457788999999999888      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++.+..  ++++..+..++.|++.|                       |.|||++|++|+|+++.|+
T Consensus        80 ~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~ql~~a-----------------------l~~LH~~~i~H~~i~~~ni  134 (268)
T cd06630          80 LFVEWMAGGSVSHLLSKYG--AFKEAVIINYTEQLLRG-----------------------LSYLHENQIIHRDVKGANL  134 (268)
T ss_pred             EEEeccCCCcHHHHHHHhC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHE
Confidence            999999 899999998754  57888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+..                                                                            
T Consensus       135 l~~~----------------------------------------------------------------------------  138 (268)
T cd06630         135 LIDS----------------------------------------------------------------------------  138 (268)
T ss_pred             EEcC----------------------------------------------------------------------------
Confidence            7751                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceeccc-------cccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                        ....++|+|||.+......       .....++..|+|||.+.+..++.++|+||+||++++
T Consensus       139 ------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~~l~~  200 (268)
T cd06630         139 ------------------TGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIE  200 (268)
T ss_pred             ------------------CCCEEEEcccccccccccccccCCccccccccccceeCHhHhccCCCCcccchHHHHHHHHH
Confidence                              1235899999987653221       123467889999999988888999999999999999


Q ss_pred             eccccccccccC
Q psy2006         307 LYLGITLMARKT  318 (351)
Q Consensus       307 l~tG~~pf~~~~  318 (351)
                      +++|..||...+
T Consensus       201 l~~g~~p~~~~~  212 (268)
T cd06630         201 MATAKPPWNAEK  212 (268)
T ss_pred             HHhCCCCCCCCC
Confidence            999999997544

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.96  E-value=2.5e-29  Score=225.64  Aligned_cols=194  Identities=24%  Similarity=0.332  Sum_probs=165.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||.|+||.||+|++..+++.||+|.+..... .+.+.+|+++++.++|++      |+++++.+....+.|+++||+ 
T Consensus         9 ~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~e~~~~~~l~~~~------i~~~~~~~~~~~~~~l~~e~~~   81 (256)
T cd06612           9 EKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED-LQEIIKEISILKQCDSPY------IVKYYGSYFKNTDLWIVMEYCG   81 (256)
T ss_pred             hhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH-HHHHHHHHHHHHhCCCCc------EeeeeeeeecCCcEEEEEecCC
Confidence            579999999999999988899999999986533 567889999999998877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..+++..++.++.|++.+                       +.|||+.+++|+|++++|+.+.    
T Consensus        82 ~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~~-----------------------l~~lh~~~i~H~dl~~~ni~~~----  133 (256)
T cd06612          82 AGSVSDIMKITN-KTLTEEEIAAILYQTLKG-----------------------LEYLHSNKKIHRDIKAGNILLN----  133 (256)
T ss_pred             CCcHHHHHHhCc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCcceEEEC----
Confidence            889999987654 357788888888888877                       9999999999999999999876    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (256)
T cd06612         134 --------------------------------------------------------------------------------  133 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                 ....++|+|||++.....   ......++..|+|||.+.+..++.++|+||+|++++++++|..||...
T Consensus       134 -----------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~s~G~il~~l~~g~~p~~~~  202 (256)
T cd06612         134 -----------EEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLGITAIEMAEGKPPYSDI  202 (256)
T ss_pred             -----------CCCcEEEcccccchhcccCccccccccCCccccCHHHHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCc
Confidence                       234689999998865332   223456788999999998888899999999999999999999999876


Q ss_pred             CCCc
Q psy2006         318 TKTK  321 (351)
Q Consensus       318 ~~~~  321 (351)
                      +..+
T Consensus       203 ~~~~  206 (256)
T cd06612         203 HPMR  206 (256)
T ss_pred             chhh
Confidence            5544

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG2345|consensus

Probab=99.96  E-value=5.2e-30  Score=218.80  Aligned_cols=211  Identities=19%  Similarity=0.182  Sum_probs=169.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-----eEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-----HMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-----~~~l   75 (351)
                      ++||+|+|+-||++.+..+++.||+|.+.... ...+.+.+|+...+++.|++      |++++++...+.     ..||
T Consensus        27 ~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~------vl~l~dh~l~~~~D~~~~~yl  100 (302)
T KOG2345|consen   27 RLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPN------VLRLVDHQLREEKDGKHEAYL  100 (302)
T ss_pred             eeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcc------hHHHHHHHHHhhccCceeEEE
Confidence            67999999999999999999999999998654 56778999999999999877      999998876554     5999


Q ss_pred             EEecc-CCCHHHHHHhcCC--CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc--ccccccCC
Q psy2006          76 AFEIL-GLSVFDFLKENNY--LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK--REVRRVRR  150 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~--~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~d~k~  150 (351)
                      +++|. .|+|.+.+.+...  ..++|.++..++.+++.|                       |.++|+..  ..|||+||
T Consensus       101 l~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~g-----------------------L~~lH~~~~~yAH~DiKP  157 (302)
T KOG2345|consen  101 LLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRG-----------------------LEALHEKEPPYAHRDIKP  157 (302)
T ss_pred             EeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHH-----------------------HHHHhccCCcccccCCCc
Confidence            99988 9999999987632  246677777777777776                       99999998  99999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      +|+.++|                                                                         
T Consensus       158 ~NILls~-------------------------------------------------------------------------  164 (302)
T KOG2345|consen  158 ANILLSD-------------------------------------------------------------------------  164 (302)
T ss_pred             ceeEecC-------------------------------------------------------------------------
Confidence            9999983                                                                         


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecc------------ccccccccceeeCceeeec---CCCCCcc
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------------HHSTIVSTRHYRAPEVILE---LGWAQPC  295 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------------~~~~~~gt~~y~aPE~~~~---~~~~~~~  295 (351)
                                            .+.++++|||.+.....            .-..-.+|..|+|||++.-   .-.+.++
T Consensus       165 ----------------------~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~ti~ert  222 (302)
T KOG2345|consen  165 ----------------------SGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCTITERT  222 (302)
T ss_pred             ----------------------CCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCccccccc
Confidence                                  35678999998764211            0112345789999999863   3458999


Q ss_pred             ceeeeeeeeEeeccccccccccCCCce-----eeecccCCcccccc
Q psy2006         296 DVWSIGCIIFELYLGITLMARKTKTKY-----FYHGKLDWDEKGTA  336 (351)
Q Consensus       296 DiwslG~~l~~l~tG~~pf~~~~~~~~-----~~~~~~~~~~~~~~  336 (351)
                      |||||||++|+++.|..||+..-...-     ..++.+.|+..+..
T Consensus       223 DIWSLGCtLYa~mf~~sPfe~~~~~GgSlaLAv~n~q~s~P~~~~y  268 (302)
T KOG2345|consen  223 DIWSLGCTLYAMMFGESPFERIYQQGGSLALAVQNAQISIPNSSRY  268 (302)
T ss_pred             chhhhhHHHHHHHHcCCcchHHhhcCCeEEEeeeccccccCCCCCc
Confidence            999999999999999999977543322     24688888887763

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.96  E-value=2.3e-29  Score=230.19  Aligned_cols=197  Identities=20%  Similarity=0.241  Sum_probs=161.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++.||+|+||.||+|.+..+++.||+|.+...  ......+.+|+.+++++.|+|      |+++++.|..+++.++|||
T Consensus         6 ~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~~~~~lv~e   79 (286)
T cd06622           6 LDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPY------IVDFYGAFFIEGAVYMCME   79 (286)
T ss_pred             hhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCc------HHhhhhheecCCeEEEEEe
Confidence            46899999999999999889999999998753  233456788999999998877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcC-CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeEE
Q psy2006          79 IL-GLSVFDFLKENN-YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIRL  155 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~-~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~l  155 (351)
                      |+ +++|.+++.... ...+++..++.++.|++.+                       +.|||+ .+++|+|+++.|+.+
T Consensus        80 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------l~~LH~~~~i~H~dl~p~nil~  136 (286)
T cd06622          80 YMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKG-----------------------LKFLKEEHNIIHRDVKPTNVLV  136 (286)
T ss_pred             ecCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHH-----------------------HHHHHhcCCEeeCCCCHHHEEE
Confidence            99 889999887642 1256777778877777777                       999996 599999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       137 ~-------------------------------------------------------------------------------  137 (286)
T cd06622         137 N-------------------------------------------------------------------------------  137 (286)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCC------CCCccceeeeeeeeEeec
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELG------WAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~------~~~~~DiwslG~~l~~l~  308 (351)
                                      ....++|+|||.+.... .......+++.|+|||.+.+..      ++.++|+||+||++|+++
T Consensus       138 ----------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~~l~  201 (286)
T cd06622         138 ----------------GNGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQSDVWSLGLSILEMA  201 (286)
T ss_pred             ----------------CCCCEEEeecCCcccccCCccccCCCccCccCcchhcCCCCCccCCCCcccchHhHHHHHHHHH
Confidence                            23468999999886532 2233456788999999986543      478999999999999999


Q ss_pred             cccccccccCCCc
Q psy2006         309 LGITLMARKTKTK  321 (351)
Q Consensus       309 tG~~pf~~~~~~~  321 (351)
                      +|..||...+...
T Consensus       202 ~g~~pf~~~~~~~  214 (286)
T cd06622         202 LGRYPYPPETYAN  214 (286)
T ss_pred             hCCCCCCCcchhh
Confidence            9999997655443

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.96  E-value=2.2e-29  Score=237.65  Aligned_cols=189  Identities=22%  Similarity=0.416  Sum_probs=158.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~   72 (351)
                      +.||+|+||.||+|.+..+++.||+|++.+.   ......+.+|+.+++.++|+|      |++++++|....      +
T Consensus        22 ~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~   95 (353)
T cd07850          22 KPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKN------IIGLLNVFTPQKSLEEFQD   95 (353)
T ss_pred             EEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCC------CcceeeeeccCCCccccCc
Confidence            6799999999999999999999999998642   233456678999999999888      999999987543      6


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      .|+||||++++|.+.+...    +++..+..++.|++.|                       |+|||++|++|||+|+.|
T Consensus        96 ~~lv~e~~~~~l~~~~~~~----l~~~~~~~~~~ql~~a-----------------------L~~LH~~gi~H~dlkp~N  148 (353)
T cd07850          96 VYLVMELMDANLCQVIQMD----LDHERMSYLLYQMLCG-----------------------IKHLHSAGIIHRDLKPSN  148 (353)
T ss_pred             EEEEEeccCCCHHHHHhhc----CCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeeCCCCHHH
Confidence            8999999988999987653    6777777777777777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       149 il~~----------------------------------------------------------------------------  152 (353)
T cd07850         149 IVVK----------------------------------------------------------------------------  152 (353)
T ss_pred             EEEC----------------------------------------------------------------------------
Confidence            9876                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccc--cccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                         ..+.++|+|||++......  .....+++.|+|||.+.+..++.++|+||+||++++|++|
T Consensus       153 -------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~~l~~g  213 (353)
T cd07850         153 -------------------SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIRG  213 (353)
T ss_pred             -------------------CCCCEEEccCccceeCCCCCCCCCCcccccccCHHHHhCCCCCCchhhHhHHHHHHHHHHC
Confidence                               2356899999998754322  2335678899999999999999999999999999999999


Q ss_pred             cccccccC
Q psy2006         311 ITLMARKT  318 (351)
Q Consensus       311 ~~pf~~~~  318 (351)
                      ..||...+
T Consensus       214 ~~pf~~~~  221 (353)
T cd07850         214 TVLFPGTD  221 (353)
T ss_pred             CCCCCCCC
Confidence            99997665

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.96  E-value=2.5e-29  Score=229.63  Aligned_cols=197  Identities=16%  Similarity=0.277  Sum_probs=155.1

Q ss_pred             ccccCcccceEEEEEEe----ecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVY----EVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~----~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++||+|+||+||+|.+.    .+++.||+|.+....  .....+.+|+.+++.+.|+|      |+++++++......|+
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~l   84 (283)
T cd05090          11 EELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPN------IVCLLGVVTQEQPVCM   84 (283)
T ss_pred             eeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCC------eeeEEEEEecCCceEE
Confidence            67999999999999853    356899999997432  23356788999999999888      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCC---------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccc
Q psy2006          76 AFEIL-GLSVFDFLKENNY---------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN  139 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~---------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH  139 (351)
                      ||||+ +++|.+++.....               ..+++..+..++.|++                       .||.|||
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~-----------------------~al~~lH  141 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIA-----------------------AGMEYLS  141 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHH-----------------------HHHHHHH
Confidence            99999 8899999864421               1234444444444444                       4599999


Q ss_pred             cccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCC
Q psy2006         140 KKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHP  219 (351)
Q Consensus       140 ~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~  219 (351)
                      +++++|+|+|+.|+.+.+                                                              
T Consensus       142 ~~~i~H~dlkp~nili~~--------------------------------------------------------------  159 (283)
T cd05090         142 SHFFVHKDLAARNILIGE--------------------------------------------------------------  159 (283)
T ss_pred             hcCeehhccccceEEEcC--------------------------------------------------------------
Confidence            999999999999998761                                                              


Q ss_pred             CCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCc
Q psy2006         220 FFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQP  294 (351)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~  294 (351)
                                                       ...+||+|||++.....     ......++..|+|||.+.+..++.+
T Consensus       160 ---------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  206 (283)
T cd05090         160 ---------------------------------QLHVKISDLGLSREIYSADYYRVQPKSLLPIRWMPPEAIMYGKFSSD  206 (283)
T ss_pred             ---------------------------------CCcEEeccccccccccCCcceecccCCCccceecChHHhccCCCCch
Confidence                                             34589999998864321     1223445667999999988888999


Q ss_pred             cceeeeeeeeEeecc-ccccccccCCCce
Q psy2006         295 CDVWSIGCIIFELYL-GITLMARKTKTKY  322 (351)
Q Consensus       295 ~DiwslG~~l~~l~t-G~~pf~~~~~~~~  322 (351)
                      +|+|||||++|++++ |..||.+.+..++
T Consensus       207 ~Dv~slG~il~el~~~g~~p~~~~~~~~~  235 (283)
T cd05090         207 SDIWSFGVVLWEIFSFGLQPYYGFSNQEV  235 (283)
T ss_pred             hhhHHHHHHHHHHHcCCCCCCCCCCHHHH
Confidence            999999999999998 9999987665443

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.96  E-value=4.4e-29  Score=225.09  Aligned_cols=194  Identities=19%  Similarity=0.249  Sum_probs=156.8

Q ss_pred             cccCcccceEEEEEEe--ecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           3 SLNCVASNHVCTNVVY--EVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~--~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      .||+|+||.||+|.++  .++..||+|++....  ...+.+.+|+.+++.++|+|      |+++++++. ....++|||
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~------ii~~~~~~~-~~~~~lv~e   74 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPY------IVRMIGVCE-AEALMLVME   74 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCC------eEEEEEEEc-CCCeEEEEE
Confidence            5999999999999875  345679999997542  33456789999999999887      999999885 457899999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++.... ..+++..+..++.|++.+                       +.|||++|++|+|+|+.|+.+. 
T Consensus        75 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dlkp~nil~~-  129 (257)
T cd05115          75 MASGGPLNKFLSGKK-DEITVSNVVELMHQVSMG-----------------------MKYLEGKNFVHRDLAARNVLLV-  129 (257)
T ss_pred             eCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhcCeeecccchheEEEc-
Confidence            99 899999987643 357888888888888888                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       130 --------------------------------------------------------------------------------  129 (257)
T cd05115         130 --------------------------------------------------------------------------------  129 (257)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-c
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-G  310 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G  310 (351)
                                    ....+||+|||.+......      .....+++.|+|||.+....++.++|+|||||++|++++ |
T Consensus       130 --------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g  195 (257)
T cd05115         130 --------------NQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFSSRSDVWSYGITMWEAFSYG  195 (257)
T ss_pred             --------------CCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCCchhhHHHHHHHHHHHhcCC
Confidence                          1346889999987643211      111223568999999988888999999999999999986 9


Q ss_pred             cccccccCCCce
Q psy2006         311 ITLMARKTKTKY  322 (351)
Q Consensus       311 ~~pf~~~~~~~~  322 (351)
                      ..||.+.+..++
T Consensus       196 ~~p~~~~~~~~~  207 (257)
T cd05115         196 QKPYKKMKGPEV  207 (257)
T ss_pred             CCCcCcCCHHHH
Confidence            999987765543

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.96  E-value=3.1e-29  Score=230.25  Aligned_cols=196  Identities=21%  Similarity=0.327  Sum_probs=163.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||.|+||+||+|.+..+++.||+|.+....   ...+.+.+|+++++.++|+|      |+++++++....+.|+|||
T Consensus         8 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          8 EKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGN------IVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             EEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCC------EeeEEEEEecCCeEEEEEe
Confidence            57999999999999998899999999996532   22345778999999999877      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |++++|.+.+.......+++..++.++.|++.|                       |+|||+++++|+|++++|+.+.+ 
T Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~i~H~dl~p~nill~~-  137 (294)
T PLN00009         82 YLDLDLKKHMDSSPDFAKNPRLIKTYLYQILRG-----------------------IAYCHSHRVLHRDLKPQNLLIDR-  137 (294)
T ss_pred             cccccHHHHHHhCCCCCcCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeCCCCCcceEEEEC-
Confidence            998899999877655556777888888888888                       99999999999999999998861 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (294)
T PLN00009        138 --------------------------------------------------------------------------------  137 (294)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                   ....+||+|||++......   .....+++.|+|||.+.+. .++.++|+||+||++++++||.+||
T Consensus       138 -------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~i~~~l~tg~~pf  204 (294)
T PLN00009        138 -------------RTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKPLF  204 (294)
T ss_pred             -------------CCCEEEEcccccccccCCCccccccCceeecccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence                         1235899999988653221   2334567899999988664 5688999999999999999999999


Q ss_pred             cccCCC
Q psy2006         315 ARKTKT  320 (351)
Q Consensus       315 ~~~~~~  320 (351)
                      ...+..
T Consensus       205 ~~~~~~  210 (294)
T PLN00009        205 PGDSEI  210 (294)
T ss_pred             CCCCHH
Confidence            876543

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.96  E-value=3.1e-29  Score=228.43  Aligned_cols=201  Identities=18%  Similarity=0.231  Sum_probs=161.9

Q ss_pred             ccccCcccceEEEEEEee-----cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYE-----VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||.||+|.+..     ++..||+|.+...  ......+..|+.+++.++|+|      |+++++++...+..+
T Consensus        12 ~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~   85 (277)
T cd05036          12 RALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQN------IVRLIGVSFERLPRF   85 (277)
T ss_pred             eECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCC------EeeEEEEEccCCCcE
Confidence            679999999999999877     7789999998643  223356788999999999887      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCC-----CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccccc
Q psy2006          75 IAFEIL-GLSVFDFLKENNY-----LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV  148 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~-----~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~  148 (351)
                      +||||+ +++|.+++.....     ..+++..+..++.|++.+                       +.|||+++++|+|+
T Consensus        86 lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~LH~~~ivH~dl  142 (277)
T cd05036          86 ILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKG-----------------------CKYLEENHFIHRDI  142 (277)
T ss_pred             EEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeeccc
Confidence            999999 8999999987642     235666677777777766                       99999999999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      +++|+.+.+.|                                                                     
T Consensus       143 kp~nil~~~~~---------------------------------------------------------------------  153 (277)
T cd05036         143 AARNCLLTCKG---------------------------------------------------------------------  153 (277)
T ss_pred             chheEEEeccC---------------------------------------------------------------------
Confidence            99999887311                                                                     


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeee
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCI  303 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~  303 (351)
                                             ....++|+|||++......     ......+..|+|||.+.+..++.++|+|||||+
T Consensus       154 -----------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslG~i  210 (277)
T cd05036         154 -----------------------PGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPEAFLDGIFTSKTDVWSFGVL  210 (277)
T ss_pred             -----------------------CCcceEeccCccccccCCccceecCCCCCccHhhCCHHHHhcCCcCchhHHHHHHHH
Confidence                                   1235899999988653211     112233467999999988889999999999999


Q ss_pred             eEeecc-ccccccccCCCcee
Q psy2006         304 IFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       304 l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +|++++ |..||.+.+..+..
T Consensus       211 l~el~~~g~~pf~~~~~~~~~  231 (277)
T cd05036         211 LWEIFSLGYMPYPGRTNQEVM  231 (277)
T ss_pred             HHHHHcCCCCCCCCCCHHHHH
Confidence            999996 99999887766543

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.96  E-value=3.4e-29  Score=234.97  Aligned_cols=220  Identities=19%  Similarity=0.220  Sum_probs=159.5

Q ss_pred             CccccCcccceEEEEEEe-----ecCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeC-C
Q psy2006           1 MCSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYH-G   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~-~   71 (351)
                      .+.||+|+||.||+|.+.     .+++.||+|++...  ....+.+.+|+++++++ .|+|      |+++++++... .
T Consensus        12 ~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~n------iv~~~~~~~~~~~   85 (337)
T cd05054          12 GKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLN------VVNLLGACTKPGG   85 (337)
T ss_pred             hcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcc------hhheeeeEecCCC
Confidence            367999999999999743     34589999999743  23345677899999999 5666      99999988655 4


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCCCCCchHH--HHHHH------H----------------------------HHHHhhhc
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNYLPYSLDQ--VRHMS------Y----------------------------QLIYAKEN  114 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~--~~~~~------~----------------------------ql~~~~~~  114 (351)
                      .+++||||+ +++|.+++........+...  .....      .                            .-......
T Consensus        86 ~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (337)
T cd05054          86 PLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDEL  165 (337)
T ss_pred             CEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHH
Confidence            799999999 89999999764321110000  00000      0                            00000001


Q ss_pred             CCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHH
Q psy2006         115 NYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQL  194 (351)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~  194 (351)
                      ...+++.+.+..++.|++.||.|||+++++|||+|+.|+.+.+                                     
T Consensus       166 ~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~-------------------------------------  208 (337)
T cd05054         166 YKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNILLSE-------------------------------------  208 (337)
T ss_pred             hhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeC-------------------------------------
Confidence            1125677778888888888899999999999999999998872                                     


Q ss_pred             HHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----
Q psy2006         195 FDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----  269 (351)
Q Consensus       195 ~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----  269 (351)
                                                                                ...++|+|||++.....     
T Consensus       209 ----------------------------------------------------------~~~vkL~DfG~a~~~~~~~~~~  230 (337)
T cd05054         209 ----------------------------------------------------------NNVVKICDFGLARDIYKDPDYV  230 (337)
T ss_pred             ----------------------------------------------------------CCcEEEeccccchhcccCcchh
Confidence                                                                      24589999998865321     


Q ss_pred             ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccCCCc
Q psy2006         270 HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKTKTK  321 (351)
Q Consensus       270 ~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~  321 (351)
                      ......++..|+|||.+.+..++.++|+||+||+++++++ |..||.+....+
T Consensus       231 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~p~~~~~~~~  283 (337)
T cd05054         231 RKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPYPGVQIDE  283 (337)
T ss_pred             hccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCCCCCCCCccH
Confidence            1123445678999999999999999999999999999997 999997754433

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.96  E-value=6e-29  Score=227.29  Aligned_cols=197  Identities=22%  Similarity=0.277  Sum_probs=159.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEe-----eCCeEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFD-----YHGHMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~-----~~~~~~   74 (351)
                      ++.||+|+||.||+|.+..+++.+|+|++.......+.+..|+.+++.+ +|+|      |+++++++.     .+++.+
T Consensus        23 ~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~e~~~l~~l~~h~~------i~~~~~~~~~~~~~~~~~~~   96 (286)
T cd06638          23 IETIGKGTYGKVFKVLNKKNGSKAAVKILDPIHDIDEEIEAEYNILKALSDHPN------VVKFYGMYYKKDVKNGDQLW   96 (286)
T ss_pred             eeeeccCCCcEEEEEEECCCCceeEEEeeccccchHHHHHHHHHHHHHHhcCCC------eeeeeeeeeecccCCCCeEE
Confidence            3679999999999999999999999999876444446677899999999 5777      999999884     345899


Q ss_pred             EEEecc-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          75 IAFEIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +||||+ +++|.+++...  ....+++..+..++.|++.+                       +.|||+.+++|||+++.
T Consensus        97 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dlkp~  153 (286)
T cd06638          97 LVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMG-----------------------LQHLHVNKTIHRDVKGN  153 (286)
T ss_pred             EEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHH-----------------------HHHHHhCCccccCCCHH
Confidence            999999 89999987642  22356777777777777777                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.+                                                                          
T Consensus       154 nili~~--------------------------------------------------------------------------  159 (286)
T cd06638         154 NILLTT--------------------------------------------------------------------------  159 (286)
T ss_pred             hEEECC--------------------------------------------------------------------------
Confidence            998872                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeec-----CCCCCccceeeeeee
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILE-----LGWAQPCDVWSIGCI  303 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwslG~~  303 (351)
                                           ...++|+|||++.....   ......|++.|+|||.+..     ..++.++|+||+||+
T Consensus       160 ---------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slGvi  218 (286)
T cd06638         160 ---------------------EGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQLDSTYDARCDVWSLGIT  218 (286)
T ss_pred             ---------------------CCCEEEccCCceeecccCCCccccccCCCcccChhhhchhhhccccccchhhhhhHHHH
Confidence                                 34589999998865322   2234568899999998753     457889999999999


Q ss_pred             eEeeccccccccccCCCc
Q psy2006         304 IFELYLGITLMARKTKTK  321 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~~~  321 (351)
                      +|++++|..||......+
T Consensus       219 ~~el~~g~~p~~~~~~~~  236 (286)
T cd06638         219 AIELGDGDPPLADLHPMR  236 (286)
T ss_pred             HHHHhcCCCCCCCCchhH
Confidence            999999999997765433

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.96  E-value=3.2e-29  Score=228.79  Aligned_cols=195  Identities=26%  Similarity=0.346  Sum_probs=165.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||.|+||.||+|.+..+++.||+|++....   ...+.+.+|+.+++.+.|+|      |+++++++......++|||
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~~~~~~v~e   79 (286)
T cd07832           6 GRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPY------VVKLLDVFPHGSGFVLVME   79 (286)
T ss_pred             eecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCC------CcceeeEEecCCeeEEEec
Confidence            57999999999999998899999999997532   23456789999999998777      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |++++|.+++.... ..+++..++.++.|++.+                       |.|||+.+++|+|+++.|+.+.+ 
T Consensus        80 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dl~p~ni~~~~-  134 (286)
T cd07832          80 YMPSDLSEVLRDEE-RPLPEAQVKSYMRMLLKG-----------------------VAYMHANGIMHRDLKPANLLISA-  134 (286)
T ss_pred             ccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCcCHHHEEEcC-
Confidence            99999999987654 467888888888888888                       99999999999999999998862 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (286)
T cd07832         135 --------------------------------------------------------------------------------  134 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ...++|+|||.+......    .....++..|+|||.+.+. .++.++|+||+||+++++++|.+|
T Consensus       135 --------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~  200 (286)
T cd07832         135 --------------DGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKYDPGVDLWAVGCIFAELLNGSPL  200 (286)
T ss_pred             --------------CCcEEEeeeeecccccCCCCCccccccCcccccCceeeeccccCCchhHHHHHHHHHHHHHcCCcC
Confidence                          346899999987653322    2345788899999998754 458899999999999999999999


Q ss_pred             ccccCCCc
Q psy2006         314 MARKTKTK  321 (351)
Q Consensus       314 f~~~~~~~  321 (351)
                      |.+.+..+
T Consensus       201 ~~~~~~~~  208 (286)
T cd07832         201 FPGENDIE  208 (286)
T ss_pred             cCCCCHHH
Confidence            98766544

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.96  E-value=4e-29  Score=224.36  Aligned_cols=198  Identities=19%  Similarity=0.238  Sum_probs=167.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||+|+||.||+|.+..+++.+|+|.+...   ....+.+.+|+++++.++|++      |+++++.+...+..++|||
T Consensus         6 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~~~~~lv~e   79 (256)
T cd08220           6 RVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPN------IIEYYENFLEDKALMIVME   79 (256)
T ss_pred             EEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCc------hhheeeeEecCCEEEEEEe
Confidence            6799999999999999999999999999653   233456788999999999877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++.......+++..+..++.|++.+                       +.|||++|++|+|+++.|+.+.+
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------l~~lh~~~i~h~dl~~~nil~~~  136 (256)
T cd08220          80 YAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLA-----------------------LHHVHTKLILHRDLKTQNILLDK  136 (256)
T ss_pred             cCCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHEEEcC
Confidence            99 8899999987654557888888888888888                       99999999999999999998862


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (256)
T cd08220         137 --------------------------------------------------------------------------------  136 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                    ....++++|||.+.....  ......+++.|+|||.+.+..++.++|+||+|++++++++|..||.
T Consensus       137 --------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~  202 (256)
T cd08220         137 --------------HKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYNQKSDIWALGCVLYELASLKRAFE  202 (256)
T ss_pred             --------------CCCEEEEccCCCceecCCCccccccccCCcccCchhccCCCCCcccchHHHHHHHHHHHhCCCCcc
Confidence                          123579999998875432  2234567889999999988888999999999999999999999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      ..+....
T Consensus       203 ~~~~~~~  209 (256)
T cd08220         203 AANLPAL  209 (256)
T ss_pred             cCchHHH
Confidence            7765443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.96  E-value=9.4e-30  Score=234.53  Aligned_cols=194  Identities=19%  Similarity=0.283  Sum_probs=163.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      .+||.|+||.||+|.+..+++.||+|++... ....+.+.+|+.+++.+.|+|      |+++++.|..++..|+||||+
T Consensus        27 ~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~------i~~~~~~~~~~~~~~iv~e~~  100 (297)
T cd06659          27 IKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQN------VVEMYKSYLVGEELWVLMEFL  100 (297)
T ss_pred             hhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCc------hhhhhhheeeCCeEEEEEecC
Confidence            4799999999999999889999999999643 233456788999999999887      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++...   .+++..+..++.|++.+                       |.|||+.+++|+|+++.|+.+.   
T Consensus       101 ~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~-----------------------L~~LH~~~ivH~dl~p~Nill~---  151 (297)
T cd06659         101 QGGALTDIVSQT---RLNEEQIATVCESVLQA-----------------------LCYLHSQGVIHRDIKSDSILLT---  151 (297)
T ss_pred             CCCCHHHHHhhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHeEEc---
Confidence             88999877553   46777788888888777                       9999999999999999999876   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (297)
T cd06659         152 --------------------------------------------------------------------------------  151 (297)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                  ....++|+|||++.....   ......|++.|+|||.+.+..++.++|+||+||+++++++|..||..
T Consensus       152 ------------~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~  219 (297)
T cd06659         152 ------------LDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEVDIWSLGIMVIEMVDGEPPYFS  219 (297)
T ss_pred             ------------cCCcEEEeechhHhhcccccccccceecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                        234689999998754221   22345688999999999888899999999999999999999999987


Q ss_pred             cCCCce
Q psy2006         317 KTKTKY  322 (351)
Q Consensus       317 ~~~~~~  322 (351)
                      .+..+.
T Consensus       220 ~~~~~~  225 (297)
T cd06659         220 DSPVQA  225 (297)
T ss_pred             CCHHHH
Confidence            654443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.96  E-value=2e-29  Score=229.65  Aligned_cols=194  Identities=24%  Similarity=0.333  Sum_probs=163.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||.|+||.||+|.+..+++.||+|++...  ....+.+.+|+.+++.++|++      |+++++.|..+.+.|+||||
T Consensus        10 ~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06642          10 ERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY------ITRYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCc------cHhhhcccccCCceEEEEEc
Confidence            5799999999999999889999999998743  233456788999999998877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++...   .+++..++.++.|++.+                       +.|||+++++|+|++++|+.+.+ 
T Consensus        84 ~~~~~L~~~~~~~---~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~ivH~dl~p~ni~i~~-  136 (277)
T cd06642          84 LGGGSALDLLKPG---PLEETYIATILREILKG-----------------------LDYLHSERKIHRDIKAANVLLSE-  136 (277)
T ss_pred             cCCCcHHHHhhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHhcCCeeccCCChheEEEeC-
Confidence            9 88999988653   47788888888888887                       99999999999999999998872 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (277)
T cd06642         137 --------------------------------------------------------------------------------  136 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                    ...++++|||++.....   ......++..|+|||.+.+..++.++|+|||||+++++++|..||.
T Consensus       137 --------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~tg~~p~~  202 (277)
T cd06642         137 --------------QGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKGEPPNS  202 (277)
T ss_pred             --------------CCCEEEccccccccccCcchhhhcccCcccccCHHHhCcCCCchhhhHHHHHHHHHHHHhCCCCCc
Confidence                          34589999998765322   2233567889999999988888999999999999999999999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      ..+..+.
T Consensus       203 ~~~~~~~  209 (277)
T cd06642         203 DLHPMRV  209 (277)
T ss_pred             ccchhhH
Confidence            6654443

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.96  E-value=3.8e-29  Score=224.76  Aligned_cols=198  Identities=19%  Similarity=0.288  Sum_probs=167.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||.|+||.||++.+..+++.||+|.+...   ....+.+.+|+.+++.++|+|      |+++++.|...++.|+||
T Consensus         5 ~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~lv~   78 (256)
T cd08218           5 VKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPN------IVQYQESFEENGNLYIVM   78 (256)
T ss_pred             EEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCC------eeeeEeeecCCCeEEEEE
Confidence            36899999999999999999999999999643   233457789999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++.......+++..+..++.|++.+                       +.|||+.+++|+|+++.|+.+.
T Consensus        79 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------l~~lh~~~i~h~~l~~~nil~~  135 (256)
T cd08218          79 DYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLA-----------------------LKHVHDRKILHRDIKSQNIFLT  135 (256)
T ss_pred             ecCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEecCCCCHHHEEEc
Confidence            999 8899999987654567888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (256)
T cd08218         136 --------------------------------------------------------------------------------  135 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ....++++|||++......   .....|++.|+|||.+.+...+.++|+||+||+++++++|..|
T Consensus       136 ---------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~i~~~l~~g~~~  200 (256)
T cd08218         136 ---------------KDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYNNKSDIWALGCVLYEMCTLKHA  200 (256)
T ss_pred             ---------------CCCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCCCCCccchhHHHHHHHHHHcCCCC
Confidence                           2346899999988653322   1235678899999999888889999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |...+..+.
T Consensus       201 ~~~~~~~~~  209 (256)
T cd08218         201 FEAGNMKNL  209 (256)
T ss_pred             ccCCCHHHH
Confidence            976654443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=3e-29  Score=226.85  Aligned_cols=196  Identities=21%  Similarity=0.242  Sum_probs=161.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch------hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV------EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~------~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~   73 (351)
                      +.||.|+||.||+|.+..+++.||+|++...      ......+.+|+.++++++|++      |+++++.+...  +.+
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~------i~~~~~~~~~~~~~~~   81 (264)
T cd06653           8 KLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDR------IVQYYGCLRDPEEKKL   81 (264)
T ss_pred             eeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCC------cceEEEEEEcCCCCEE
Confidence            5799999999999999999999999998532      123346778999999999888      99999998764  478


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++|+||+ +++|.+++....  .+++..++.++.|++.+                       +.|||+.|++|+|++++|
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~a-----------------------l~~LH~~~i~H~dl~p~n  136 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYG--ALTENVTRRYTRQILQG-----------------------VSYLHSNMIVHRDIKGAN  136 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEecCCCCHHH
Confidence            9999999 889999987754  47788888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       137 i~i~----------------------------------------------------------------------------  140 (264)
T cd06653         137 ILRD----------------------------------------------------------------------------  140 (264)
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            9875                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                         ....++|+|||.+.....      ......++..|+|||.+.+..++.++|+|||||++++
T Consensus       141 -------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  201 (264)
T cd06653         141 -------------------SAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVISGEGYGRKADVWSVACTVVE  201 (264)
T ss_pred             -------------------CCCCEEECccccccccccccccCccccccCCcccccCHhhhcCCCCCccccHHHHHHHHHH
Confidence                               134578999998764221      1123467889999999988888999999999999999


Q ss_pred             eccccccccccCCCcee
Q psy2006         307 LYLGITLMARKTKTKYF  323 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~~  323 (351)
                      +++|..||...+..+.+
T Consensus       202 l~~g~~p~~~~~~~~~~  218 (264)
T cd06653         202 MLTEKPPWAEYEAMAAI  218 (264)
T ss_pred             HHhCCCCCCccCHHHHH
Confidence            99999999876544443

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.96  E-value=7.2e-29  Score=223.21  Aligned_cols=194  Identities=20%  Similarity=0.244  Sum_probs=160.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEe-eCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD-YHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~-~~~~~~lV~E~~   80 (351)
                      +.||+|+||.||+|.  ..++.||+|.+.... ..+.+.+|+.+++.++|++      |+++++++. ..+..++||||+
T Consensus        12 ~~lg~g~~~~v~~~~--~~~~~~~~k~~~~~~-~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~lv~e~~   82 (256)
T cd05082          12 QTIGKGEFGDVMLGD--YRGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSN------LVQLLGVIVEEKGGLYIVTEYM   82 (256)
T ss_pred             eeecccCCCeEEEEE--EcCCcEEEEEeCCCc-hHHHHHHHHHHHHhCCCCC------eeeEEEEEEcCCCceEEEEECC
Confidence            579999999999998  458899999997532 3456788999999999877      999998764 456899999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.++++......+++..+..++.|++.+                       |.|||++|++|||++++|+.+.+  
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dlkp~nil~~~--  137 (256)
T cd05082          83 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA-----------------------MEYLEANNFVHRDLAARNVLVSE--  137 (256)
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEeccccchheEEEcC--
Confidence             7899999987654457788888888888888                       99999999999999999998872  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (256)
T cd05082         138 --------------------------------------------------------------------------------  137 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccC
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKT  318 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~  318 (351)
                                   ...+||+|||++...........++..|+|||.+.+..++.++|+||+||++|++++ |..||...+
T Consensus       138 -------------~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~~l~~~g~~p~~~~~  204 (256)
T cd05082         138 -------------DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  204 (256)
T ss_pred             -------------CCcEEecCCccceeccccCCCCccceeecCHHHHccCCCCchhhhHHHHHHHHHHHhCCCCCCCCCC
Confidence                         346899999988754433344455678999999988888999999999999999997 999997665


Q ss_pred             CCce
Q psy2006         319 KTKY  322 (351)
Q Consensus       319 ~~~~  322 (351)
                      ..+.
T Consensus       205 ~~~~  208 (256)
T cd05082         205 LKDV  208 (256)
T ss_pred             HHHH
Confidence            4443

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.96  E-value=3.7e-29  Score=228.76  Aligned_cols=192  Identities=21%  Similarity=0.294  Sum_probs=163.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||+|+||+||+|.+..+++.||+|++...  ....+.+.+|+++++.++|+|      |+++++.+...++.++||||
T Consensus        11 ~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~   84 (284)
T cd06620          11 SDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPY------IVSFYGAFLNENNICMCMEF   84 (284)
T ss_pred             HHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCC------cceEeeeEecCCEEEEEEec
Confidence            6799999999999999889999999998653  233467789999999998877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeEEee
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIRLID  157 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~l~D  157 (351)
                      + +++|.+++...+  .+++..+..++.|++.+                       +.|||+ .+++|+|+++.|+.+.+
T Consensus        85 ~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~-----------------------l~~LH~~~~i~H~dl~p~nil~~~  139 (284)
T cd06620          85 MDCGSLDRIYKKGG--PIPVEILGKIAVAVVEG-----------------------LTYLYNVHRIMHRDIKPSNILVNS  139 (284)
T ss_pred             CCCCCHHHHHHhcc--CCCHHHHHHHHHHHHHH-----------------------HHHHHHhcCeeccCCCHHHEEECC
Confidence            9 889999887754  57788888888888777                       999997 58999999999988762


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (284)
T cd06620         140 --------------------------------------------------------------------------------  139 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCccee-ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFD-DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                     ...++|+|||++... ........|+..|+|||.+.+..++.++|+||+||+++++++|..||..
T Consensus       140 ---------------~~~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~slG~~l~~l~tg~~p~~~  204 (284)
T cd06620         140 ---------------RGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSDVWSLGISIIELALGKFPFAF  204 (284)
T ss_pred             ---------------CCcEEEccCCcccchhhhccCccccCcccCCHHHHccCCCCccchHHHHHHHHHHHHhCCCCCcc
Confidence                           346899999987543 2222345788999999999888889999999999999999999999986


Q ss_pred             cCC
Q psy2006         317 KTK  319 (351)
Q Consensus       317 ~~~  319 (351)
                      ...
T Consensus       205 ~~~  207 (284)
T cd06620         205 SNI  207 (284)
T ss_pred             cch
Confidence            554

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>KOG0666|consensus

Probab=99.96  E-value=2.3e-30  Score=227.42  Aligned_cols=197  Identities=20%  Similarity=0.315  Sum_probs=162.5

Q ss_pred             ccccCcccceEEEEEEeec----CcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee-CCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEV----DSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY-HGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~----~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~-~~~~   73 (351)
                      .+||+|.||.||+|+...+    .+.+|||.++...   ....++.+|+.+++.++|+|      |+.|..+|.. +..+
T Consensus        30 g~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~n------vi~Lv~Vfl~~d~~v  103 (438)
T KOG0666|consen   30 GKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPN------VISLVKVFLSHDKKV  103 (438)
T ss_pred             ceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCc------chhHHHHHhccCceE
Confidence            5799999999999975543    2389999998642   23457889999999999888      9999999988 6699


Q ss_pred             EEEEeccCCCHHHHHHhc---CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          74 CIAFEILGLSVFDFLKEN---NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        74 ~lV~E~~g~sL~~~l~~~---~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      +|++||+..+|.+.|+-.   ....+|..-+++++.||+.|                       +.|||+.=|+|||+||
T Consensus       104 ~l~fdYAEhDL~~II~fHr~~~~~~lp~~mvKsilwQil~G-----------------------v~YLH~NWvlHRDLKP  160 (438)
T KOG0666|consen  104 WLLFDYAEHDLWHIIKFHRASKAKQLPRSMVKSILWQILDG-----------------------VHYLHSNWVLHRDLKP  160 (438)
T ss_pred             EEEehhhhhhHHHHHHHhccchhccCCHHHHHHHHHHHHhh-----------------------hHHHhhhheeeccCCc
Confidence            999999999999998644   22457777788888888877                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .||++.-           .                                                             
T Consensus       161 aNIlvmg-----------d-------------------------------------------------------------  168 (438)
T KOG0666|consen  161 ANILVMG-----------D-------------------------------------------------------------  168 (438)
T ss_pred             ceEEEec-----------c-------------------------------------------------------------
Confidence            9998871           0                                                             


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecccc------ccccccceeeCceeeecC-CCCCccceeeeeee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILEL-GWAQPCDVWSIGCI  303 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~------~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~  303 (351)
                                         .+.++.|||+|+|+++....+.      ...+-|.+|+|||+++|. -|+++.|+|++||+
T Consensus       169 -------------------gperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCI  229 (438)
T KOG0666|consen  169 -------------------GPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCI  229 (438)
T ss_pred             -------------------CCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHH
Confidence                               0246889999999998754433      335568899999999986 46899999999999


Q ss_pred             eEeeccccccccccC
Q psy2006         304 IFELYLGITLMARKT  318 (351)
Q Consensus       304 l~~l~tG~~pf~~~~  318 (351)
                      +.||+|-+++|.+..
T Consensus       230 faElLtl~PlF~g~E  244 (438)
T KOG0666|consen  230 FAELLTLEPLFKGRE  244 (438)
T ss_pred             HHHHHccCccccchh
Confidence            999999999998864

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.96  E-value=5.1e-29  Score=224.03  Aligned_cols=199  Identities=19%  Similarity=0.132  Sum_probs=160.5

Q ss_pred             ccccCcccceEEEEEEeecC----------cEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYEVD----------SVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~----------~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      +.||+|+||.||+|.+..++          ..+++|++.........+.+|+.+++.++|+|      |+++++++.. .
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~-~   73 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKH------LVKLYGVCVR-D   73 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhhHHHHHHHHHHHHcCCCcc------hhheeeEEec-C
Confidence            57999999999999987766          35888888765443567788999999999887      9999999988 7


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      ..++||||+ +++|.+++..... .+++..+..++.|++.|                       |.|||+++++|+|+|+
T Consensus        74 ~~~lv~e~~~~~~L~~~l~~~~~-~~~~~~~~~~~~~i~~~-----------------------l~~LH~~~i~H~dlkp  129 (259)
T cd05037          74 ENIMVEEYVKFGPLDVFLHREKN-NVSLHWKLDVAKQLASA-----------------------LHYLEDKKLVHGNVCG  129 (259)
T ss_pred             CcEEEEEcCCCCcHHHHHHhhcc-CCCHHHHHHHHHHHHHH-----------------------HHHHhhCCeecccCcc
Confidence            889999999 8999999987652 57777788888888887                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .|+.+.+-+..                                                                     
T Consensus       130 ~Nill~~~~~~---------------------------------------------------------------------  140 (259)
T cd05037         130 KNILVARYGLN---------------------------------------------------------------------  140 (259)
T ss_pred             ceEEEecCccc---------------------------------------------------------------------
Confidence            99998731100                                                                     


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecC--CCCCccceeeeeeeeEeec
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILEL--GWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwslG~~l~~l~  308 (351)
                                         ......++|+|||.+..... .....++..|+|||.+.+.  .++.++|+||+||++++++
T Consensus       141 -------------------~~~~~~~kl~Dfg~a~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~~~~~l~  200 (259)
T cd05037         141 -------------------EGYVPFIKLSDPGIPITVLS-REERVERIPWIAPECIRNGQASLTIAADKWSFGTTLLEIC  200 (259)
T ss_pred             -------------------cCCceeEEeCCCCccccccc-ccccccCCCccChhhhcCCCCCcchhhHHHHHHHHHHHHH
Confidence                               00124689999999875433 2334566789999999876  6799999999999999999


Q ss_pred             c-ccccccccCCC
Q psy2006         309 L-GITLMARKTKT  320 (351)
Q Consensus       309 t-G~~pf~~~~~~  320 (351)
                      + |..||...+..
T Consensus       201 ~~~~~p~~~~~~~  213 (259)
T cd05037         201 SNGEEPLSTLSSS  213 (259)
T ss_pred             hCCCCCcccCCch
Confidence            8 68888776543

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.96  E-value=4.2e-29  Score=225.01  Aligned_cols=194  Identities=18%  Similarity=0.253  Sum_probs=157.4

Q ss_pred             ccccCcccceEEEEEEe--ecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVY--EVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~--~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||+|+||+||+|.++  .+++.+|+|+++...   ...+.+..|+.+++.+.|+|      |+++++++. .+..++|
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~-~~~~~lv   73 (257)
T cd05116           1 GELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPY------IVRMIGICE-AESWMLV   73 (257)
T ss_pred             CcCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCC------cceEEEEEc-CCCcEEE
Confidence            47999999999999753  567899999986532   33466788999999999887      999999875 4578999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..+..++.|++.+                       +.|+|++|++|+|+|+.|+.+
T Consensus        74 ~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~i~H~dlkp~nill  128 (257)
T cd05116          74 MELAELGPLNKFLQKNK--HVTEKNITELVHQVSMG-----------------------MKYLEETNFVHRDLAARNVLL  128 (257)
T ss_pred             EecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeecccchhhEEE
Confidence            9999 789999997654  57788888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       129 ~~------------------------------------------------------------------------------  130 (257)
T cd05116         129 VT------------------------------------------------------------------------------  130 (257)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            61                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecccc------ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                       ...++|+|||++.......      ....+++.|+|||.+....++.++|+|||||++|++++
T Consensus       131 -----------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~t  193 (257)
T cd05116         131 -----------------QHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKFSSKSDVWSFGVLMWEAFS  193 (257)
T ss_pred             -----------------CCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCcCchhHHHHHHHHHHHHHh
Confidence                             3458899999886532211      12233578999999887788999999999999999997


Q ss_pred             -ccccccccCCCce
Q psy2006         310 -GITLMARKTKTKY  322 (351)
Q Consensus       310 -G~~pf~~~~~~~~  322 (351)
                       |..||.+.+..+.
T Consensus       194 ~g~~p~~~~~~~~~  207 (257)
T cd05116         194 YGQKPYKGMKGNEV  207 (257)
T ss_pred             CCCCCCCCCCHHHH
Confidence             9999987665544

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.96  E-value=6.5e-29  Score=224.65  Aligned_cols=195  Identities=21%  Similarity=0.245  Sum_probs=160.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~   73 (351)
                      +.||+|+||.||+|.+..+++.||+|.+....      ...+.+.+|+++++.+.|++      |+++++.+...  ..+
T Consensus         8 ~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~~   81 (265)
T cd06652           8 KLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHER------IVQYYGCLRDPMERTL   81 (265)
T ss_pred             eEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCC------eeeEEeEeccCCCceE
Confidence            57999999999999999999999999985321      22356778999999999888      99999998764  478


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++||||+ +++|.+++.+..  .+++..+..++.|++.+                       |.|||+++++|+|+++.|
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~l~~~-----------------------l~~lH~~~i~H~dl~p~n  136 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYG--ALTENVTRKYTRQILEG-----------------------VSYLHSNMIVHRDIKGAN  136 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEecCCCCHHH
Confidence            9999999 889999988764  46777778888888777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.+                                                                           
T Consensus       137 il~~~---------------------------------------------------------------------------  141 (265)
T cd06652         137 ILRDS---------------------------------------------------------------------------  141 (265)
T ss_pred             EEecC---------------------------------------------------------------------------
Confidence            87761                                                                           


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                          ...++|+|||.+.....      ......|+..|+|||.+.+..++.++|+|||||++|+
T Consensus       142 --------------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~e  201 (265)
T cd06652         142 --------------------VGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVISGEGYGRKADIWSVGCTVVE  201 (265)
T ss_pred             --------------------CCCEEECcCccccccccccccccccccCCCCccccChhhhcCCCCCcchhHHHHHHHHHH
Confidence                                34588999998764221      1233567889999999988888999999999999999


Q ss_pred             eccccccccccCCCce
Q psy2006         307 LYLGITLMARKTKTKY  322 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~  322 (351)
                      +++|..||...+....
T Consensus       202 l~~g~~p~~~~~~~~~  217 (265)
T cd06652         202 MLTEKPPWAEFEAMAA  217 (265)
T ss_pred             HhhCCCCCCccchHHH
Confidence            9999999986644433

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.96  E-value=2.8e-29  Score=230.94  Aligned_cols=195  Identities=23%  Similarity=0.342  Sum_probs=163.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK------YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +.||.|+||.||+|.+..+++.||+|.+.....      ....+..|+.+++.++|+|      |+++++++...++.++
T Consensus         6 ~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~------i~~~~~~~~~~~~~~l   79 (298)
T cd07841           6 KKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPN------IIGLLDVFGHKSNINL   79 (298)
T ss_pred             eeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCC------ChhhhheeecCCEEEE
Confidence            579999999999999988999999999975422      2345668999999999877      9999999999999999


Q ss_pred             EEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          76 AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||||++++|.+++.... ..+++..+..++.|++.+                       |.|||++|++|+|++++|+.+
T Consensus        80 v~e~~~~~L~~~i~~~~-~~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~i~H~dl~p~nill  135 (298)
T cd07841          80 VFEFMETDLEKVIKDKS-IVLTPADIKSYMLMTLRG-----------------------LEYLHSNWILHRDLKPNNLLI  135 (298)
T ss_pred             EEcccCCCHHHHHhccC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeecCCChhhEEE
Confidence            99999999999997654 367888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       136 ~-------------------------------------------------------------------------------  136 (298)
T cd07841         136 A-------------------------------------------------------------------------------  136 (298)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                      ..+.++|+|||++......   .....+++.|+|||.+.+ ..++.++|+||+||+++++++|.
T Consensus       137 ----------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~e~~~g~  200 (298)
T cd07841         137 ----------------SDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGCIFAELLLRV  200 (298)
T ss_pred             ----------------CCCCEEEccceeeeeccCCCccccccccceeeeCHHHHhCCCCCCcHHHHHHHHHHHHHHHcCC
Confidence                            2356899999988654322   223456788999998865 45688999999999999999998


Q ss_pred             ccccccCCCc
Q psy2006         312 TLMARKTKTK  321 (351)
Q Consensus       312 ~pf~~~~~~~  321 (351)
                      +||.+.+..+
T Consensus       201 ~~~~~~~~~~  210 (298)
T cd07841         201 PFLPGDSDID  210 (298)
T ss_pred             ccccCCccHH
Confidence            8888766543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.96  E-value=3.4e-29  Score=228.63  Aligned_cols=196  Identities=23%  Similarity=0.333  Sum_probs=163.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++.||.|+||.||+|++..+++.||+|++....   .....+.+|++++++++|+|      |+++++++...+..++||
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~~v~   78 (284)
T cd07860           5 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------IVKLLDVIHTENKLYLVF   78 (284)
T ss_pred             eeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCC------CcchhhhcccCCcEEEEe
Confidence            367999999999999998899999999997532   12346778999999999887      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||+.++|.+++.......+++..+..++.|++.|                       |+|||+.+++|+|+++.|+.+. 
T Consensus        79 e~~~~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~-----------------------l~~lh~~~i~H~~l~p~nill~-  134 (284)
T cd07860          79 EFLHQDLKKFMDASPLSGIPLPLIKSYLFQLLQG-----------------------LAFCHSHRVLHRDLKPQNLLIN-  134 (284)
T ss_pred             eccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEEEC-
Confidence            9998899999887655568888888888888888                       9999999999999999999876 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (284)
T cd07860         135 --------------------------------------------------------------------------------  134 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCC-CCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ....++|+|||.+.....   ......+++.|+|||.+.+.. ++.++|+|||||++|+++||..|
T Consensus       135 --------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~~l~tg~~p  200 (284)
T cd07860         135 --------------TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRAL  200 (284)
T ss_pred             --------------CCCCEEEeeccchhhcccCccccccccccccccCCeEEecCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence                          234689999998764322   122345678899999987654 58889999999999999999999


Q ss_pred             ccccCCC
Q psy2006         314 MARKTKT  320 (351)
Q Consensus       314 f~~~~~~  320 (351)
                      |.+.+..
T Consensus       201 ~~~~~~~  207 (284)
T cd07860         201 FPGDSEI  207 (284)
T ss_pred             CCCCCHH
Confidence            9876543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.96  E-value=4.3e-29  Score=227.96  Aligned_cols=194  Identities=25%  Similarity=0.385  Sum_probs=159.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||.|+||.||+|+++.+++.||+|++....   ...+.+.+|+.+++.+.|+|      |++++++|....+.++|||
T Consensus         7 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~------i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           7 SKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPN------LVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             eeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCC------EeeeeeEEeeCCEEEEEEe
Confidence            57999999999999998899999999986432   22345678999999999877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ ++.|..++...  ..+++..++.++.|++.+                       |.|||+.+++|+|+++.|+.+. 
T Consensus        81 ~~~~~~l~~~~~~~--~~~~~~~~~~~~~ql~~~-----------------------l~~LH~~~i~H~dl~p~nil~~-  134 (286)
T cd07847          81 YCDHTVLNELEKNP--RGVPEHLIKKIIWQTLQA-----------------------VNFCHKHNCIHRDVKPENILIT-  134 (286)
T ss_pred             ccCccHHHHHHhCC--CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceecCCChhhEEEc-
Confidence            99 55555554433  257888888888888888                       9999999999999999999876 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (286)
T cd07847         135 --------------------------------------------------------------------------------  134 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ....++|+|||++......   .....++..|+|||.+.+ ..++.++|+||+||+++++++|.+|
T Consensus       135 --------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~i~~~l~~g~~p  200 (286)
T cd07847         135 --------------KQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGCVFAELLTGQPL  200 (286)
T ss_pred             --------------CCCcEEECccccceecCCCcccccCcccccccCCHHHHhCCCCcCchhhhHHHHHHHHHHHhCCCC
Confidence                          2346899999998754322   223567789999999876 4578899999999999999999999


Q ss_pred             ccccCCCc
Q psy2006         314 MARKTKTK  321 (351)
Q Consensus       314 f~~~~~~~  321 (351)
                      |.+.+..+
T Consensus       201 ~~~~~~~~  208 (286)
T cd07847         201 WPGKSDVD  208 (286)
T ss_pred             CCCCChHH
Confidence            98776543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=4.1e-29  Score=226.35  Aligned_cols=196  Identities=22%  Similarity=0.294  Sum_probs=161.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC------eEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG------HMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~------~~~   74 (351)
                      +.||.|+||.||+|.+..+++.+|+|++.......+.+.+|+.+++++ .|+|      |+++++.|....      +++
T Consensus        12 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~e~~~l~~~~~h~~------i~~~~~~~~~~~~~~~~~~~~   85 (275)
T cd06608          12 EVIGEGTYGKVYKARHKKTGQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHPN------IATFYGAFIKKNPPGNDDQLW   85 (275)
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEEEEEecCchhHHHHHHHHHHHHHhcCCCC------hheEEEEEEecCCCCcceEEE
Confidence            679999999999999988999999999987655556788999999998 5766      999999997654      599


Q ss_pred             EEEecc-CCCHHHHHHhcC--CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          75 IAFEIL-GLSVFDFLKENN--YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~--~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +||||+ +++|.+++....  ...+++..++.++.|++.+                       |.|||+.+++|+|+++.
T Consensus        86 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~a-----------------------l~~lH~~~i~H~~l~p~  142 (275)
T cd06608          86 LVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRG-----------------------LAYLHENKVIHRDIKGQ  142 (275)
T ss_pred             EEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHH-----------------------HHHHhcCCcccCCCCHH
Confidence            999999 889999987643  3467788888888888877                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.+                                                                          
T Consensus       143 ni~~~~--------------------------------------------------------------------------  148 (275)
T cd06608         143 NILLTK--------------------------------------------------------------------------  148 (275)
T ss_pred             HEEEcc--------------------------------------------------------------------------
Confidence            998862                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeec-----CCCCCccceeeeeee
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILE-----LGWAQPCDVWSIGCI  303 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwslG~~  303 (351)
                                           ...++|+|||++.....   ......|++.|+|||.+..     ..++.++|+||+||+
T Consensus       149 ---------------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Dv~slG~i  207 (275)
T cd06608         149 ---------------------NAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIACDEQPDASYDARSDVWSLGIT  207 (275)
T ss_pred             ---------------------CCeEEECCCccceecccchhhhcCccccccccCHhHhcccccccCCccccccHHHhHHH
Confidence                                 34689999998765322   2234568889999998753     245788999999999


Q ss_pred             eEeeccccccccccCCCc
Q psy2006         304 IFELYLGITLMARKTKTK  321 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~~~  321 (351)
                      ++++++|..||......+
T Consensus       208 l~~l~~g~~p~~~~~~~~  225 (275)
T cd06608         208 AIELADGKPPLCDMHPMR  225 (275)
T ss_pred             HHHHHhCCCCccccchHH
Confidence            999999999997654433

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=7.2e-29  Score=223.45  Aligned_cols=195  Identities=21%  Similarity=0.277  Sum_probs=164.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||.|+||.||+|.+..+++.+|+|++.... ...+.+.+|+.+++.++|++      |+++++.+...+.+|+||||+
T Consensus         9 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~------i~~~~~~~~~~~~~~l~~e~~   82 (262)
T cd06613           9 QRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPN------IVAYFGSYLRRDKLWIVMEYC   82 (262)
T ss_pred             EEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCC------hhceEEEEEeCCEEEEEEeCC
Confidence            57999999999999998899999999997642 34567889999999999888      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.... ..+++..+..++.|++.+                       +.|||+.+++|+|+++.|+.+.+  
T Consensus        83 ~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~-----------------------l~~lh~~~i~h~dl~p~ni~i~~--  136 (262)
T cd06613          83 GGGSLQDIYQVTR-GPLSELQIAYVCRETLKG-----------------------LAYLHETGKIHRDIKGANILLTE--  136 (262)
T ss_pred             CCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCceecCCChhhEEECC--
Confidence             789999887753 357777788888877777                       99999999999999999998762  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (262)
T cd06613         137 --------------------------------------------------------------------------------  136 (262)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecC---CCCCccceeeeeeeeEeecccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILEL---GWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~---~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                   .+.++|+|||.+.....   ......++..|+|||.+.+.   .++.++|+||+||++++|++|.+|
T Consensus       137 -------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~Di~slG~~l~~~~tg~~p  203 (262)
T cd06613         137 -------------DGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCDIWALGITAIELAELQPP  203 (262)
T ss_pred             -------------CCCEEECccccchhhhhhhhccccccCCccccCchhhcccccCCcCchhhhHHHHHHHHHHHhCCCC
Confidence                         34689999998765322   22345678899999998776   788899999999999999999999


Q ss_pred             ccccCCCc
Q psy2006         314 MARKTKTK  321 (351)
Q Consensus       314 f~~~~~~~  321 (351)
                      |...+..+
T Consensus       204 ~~~~~~~~  211 (262)
T cd06613         204 MFDLHPMR  211 (262)
T ss_pred             CCCCCHHH
Confidence            98765444

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.96  E-value=9.6e-29  Score=223.04  Aligned_cols=189  Identities=22%  Similarity=0.293  Sum_probs=163.2

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ||.|+||.||+|.+..+++.||+|++....    ...+.+.+|+.+++.++|++      |+++++.+..+.+.|+||||
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~   74 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPF------IVKLYRTFKDKKYIYMLMEY   74 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCC------EeeeeeeEEcCCccEEEEec
Confidence            799999999999998889999999997532    33456888999999999877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++.+..  .+++..+..++.|++.+                       |.|+|+.+++|+|+++.|+.+.  
T Consensus        75 ~~~~~L~~~l~~~~--~l~~~~~~~~~~~i~~~-----------------------l~~lH~~~~~h~dl~~~nilv~--  127 (262)
T cd05572          75 CLGGELWTILRDRG--LFDEYTARFYIACVVLA-----------------------FEYLHNRGIIYRDLKPENLLLD--  127 (262)
T ss_pred             CCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHhhCCcccCCCCHHHEEEc--
Confidence            9 899999998764  47888888888888888                       9999999999999999999876  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (262)
T cd05572         128 --------------------------------------------------------------------------------  127 (262)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceeccc--cccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                   ....++|+|||.+......  .....+++.|++||.+.+..++.++|+||+|+++|++++|..||..
T Consensus       128 -------------~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~  194 (262)
T cd05572         128 -------------SNGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSVDYWSLGILLYELLTGRPPFGE  194 (262)
T ss_pred             -------------CCCCEEEeeCCcccccCcccccccccCCcCccChhHhcCCCCCChhhhhhhHHHHHHHHhCCCCcCC
Confidence                         2346899999988654322  2345678899999998888889999999999999999999999987


Q ss_pred             cC
Q psy2006         317 KT  318 (351)
Q Consensus       317 ~~  318 (351)
                      .+
T Consensus       195 ~~  196 (262)
T cd05572         195 DD  196 (262)
T ss_pred             CC
Confidence            76

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.96  E-value=8.1e-29  Score=223.74  Aligned_cols=193  Identities=21%  Similarity=0.276  Sum_probs=163.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||.|+||.||+|.+..+++.||+|.+...    ....+.+.+|+.+++.+.|++      |+++++.|...+..++||
T Consensus         8 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~------i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           8 KKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPN------VIKYLASFIENNELNIVL   81 (267)
T ss_pred             eeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCC------eeeeeeeeecCCeEEEEE
Confidence            6799999999999999889999999998632    233567789999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcC--CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          78 EIL-GLSVFDFLKENN--YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~--~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||+ +++|.+++....  ...+++..+..++.|++.+                       +.|||+.|++|+|+++.|+.
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------l~~lh~~~i~h~dl~p~nil  138 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSA-----------------------LEHMHSKRIMHRDIKPANVF  138 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHH-----------------------HHHHHhCCEecCCcChhhEE
Confidence            999 889999987532  2346778888888888887                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       139 ~~------------------------------------------------------------------------------  140 (267)
T cd08224         139 IT------------------------------------------------------------------------------  140 (267)
T ss_pred             EC------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                       ....++|+|||++.....   ......+++.|+|||.+.+..++.++|+||+||++|++++|.
T Consensus       141 -----------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~~l~~g~  203 (267)
T cd08224         141 -----------------ATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ  203 (267)
T ss_pred             -----------------CCCcEEEeccceeeeccCCCcccceecCCccccCHHHhccCCCCchhcHHHHHHHHHHHHHCC
Confidence                             234689999998765322   223456788999999998888999999999999999999999


Q ss_pred             ccccccC
Q psy2006         312 TLMARKT  318 (351)
Q Consensus       312 ~pf~~~~  318 (351)
                      .||....
T Consensus       204 ~p~~~~~  210 (267)
T cd08224         204 SPFYGDK  210 (267)
T ss_pred             CCcccCC
Confidence            9997654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.96  E-value=6e-29  Score=225.68  Aligned_cols=198  Identities=18%  Similarity=0.202  Sum_probs=155.1

Q ss_pred             ccccCcccceEEEEEEeecCc--EEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS--VVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~--~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||.|+||.||+|.+..++.  .+|+|.+...  ....+.+.+|+.+++++ .|+|      |+++++++...+..++|
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~------iv~~~~~~~~~~~~~lv   74 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPN------IINLLGACEHRGYLYLA   74 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCC------eeeEEEEEecCCCceEE
Confidence            479999999999999887765  5688888742  33445778899999999 5666      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc
Q psy2006          77 FEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK  141 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  141 (351)
                      |||+ +++|.+++.....              ..+++..+..++.|++.|                       ++|||+.
T Consensus        75 ~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~a-----------------------l~~lH~~  131 (270)
T cd05047          75 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARG-----------------------MDYLSQK  131 (270)
T ss_pred             EEeCCCCcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHH-----------------------HHHHHHC
Confidence            9999 8999999976531              124455555555555555                       9999999


Q ss_pred             cccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         142 KREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       142 ~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                      |++|+|+|+.|+.+.                                                                 
T Consensus       132 ~i~H~dikp~nili~-----------------------------------------------------------------  146 (270)
T cd05047         132 QFIHRDLAARNILVG-----------------------------------------------------------------  146 (270)
T ss_pred             CEeecccccceEEEc-----------------------------------------------------------------
Confidence            999999999999876                                                                 


Q ss_pred             CCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecccc--ccccccceeeCceeeecCCCCCccceee
Q psy2006         222 DKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWS  299 (351)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~Diws  299 (351)
                                                    ....++++|||++.......  .....+..|+|||++....++.++|+||
T Consensus       147 ------------------------------~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~s  196 (270)
T cd05047         147 ------------------------------ENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWS  196 (270)
T ss_pred             ------------------------------CCCeEEECCCCCccccchhhhccCCCCccccCChHHHccCCCCchhhHHH
Confidence                                          23468999999875322111  1122356799999998888899999999


Q ss_pred             eeeeeEeecc-ccccccccCCCcee
Q psy2006         300 IGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       300 lG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      |||+++++++ |..||.+.+..+.+
T Consensus       197 lG~il~el~~~g~~pf~~~~~~~~~  221 (270)
T cd05047         197 YGVLLWEIVSLGGTPYCGMTCAELY  221 (270)
T ss_pred             HHHHHHHHHcCCCCCccccCHHHHH
Confidence            9999999996 99999876655443

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.96  E-value=3.8e-29  Score=225.31  Aligned_cols=196  Identities=18%  Similarity=0.245  Sum_probs=160.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++.||+|+||+||+|.+. .+..+|+|.+.......+.+.+|+.+++.+.|+|      |+++++++...+..++||||+
T Consensus         9 ~~~lg~G~~~~vy~~~~~-~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05113           9 LKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMKLSHEK------LVQLYGVCTKQRPIYIVTEYM   81 (256)
T ss_pred             eeEecCcccceEEEEEec-CCCcEEEEEcCCCcccHHHHHHHHHHHhcCCCCC------eeeEEEEEccCCCcEEEEEcC
Confidence            357999999999999863 4556999998765444567889999999999877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++..... .+++..+..++.|++.|                       |.|||+.|++|+|++++|+.+.+  
T Consensus        82 ~~~~l~~~i~~~~~-~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dl~p~nili~~--  135 (256)
T cd05113          82 SNGCLLNYLREHGK-RFQPSQLLEMCKDVCEG-----------------------MAYLESKQFIHRDLAARNCLVDD--  135 (256)
T ss_pred             CCCcHHHHHHhcCC-CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccccCcceEEEcC--
Confidence             8899999977542 57888888888888888                       99999999999999999998762  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (256)
T cd05113         136 --------------------------------------------------------------------------------  135 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecccc-c---cccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-S---TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLM  314 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-~---~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf  314 (351)
                                   ...+||+|||.+....... .   ...++..|++||.+.+..++.++|+|||||++|++++ |..||
T Consensus       136 -------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Di~slG~~l~~l~~~g~~p~  202 (256)
T cd05113         136 -------------QGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSDVWAFGVLMWEVYSLGKMPY  202 (256)
T ss_pred             -------------CCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhHHHHHHHHHHHHhcCCCCCc
Confidence                         2468999999876432111 1   1234567999999988888999999999999999998 99999


Q ss_pred             cccCCCce
Q psy2006         315 ARKTKTKY  322 (351)
Q Consensus       315 ~~~~~~~~  322 (351)
                      ...+..+.
T Consensus       203 ~~~~~~~~  210 (256)
T cd05113         203 ERFNNSET  210 (256)
T ss_pred             CcCCHHHH
Confidence            87665443

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.96  E-value=4.9e-29  Score=229.25  Aligned_cols=196  Identities=21%  Similarity=0.278  Sum_probs=164.0

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++.||.|+||+||+|.+..+++.||+|.+... ....+.+.+|+.+++.++|++      |+++++.|...+..|+|+||
T Consensus        24 ~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~------i~~~~~~~~~~~~~~lv~e~   97 (293)
T cd06647          24 FEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPN------IVNYLDSYLVGDELWVVMEY   97 (293)
T ss_pred             eeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCC------eeehhheeeeCCcEEEEEec
Confidence            36799999999999999889999999999643 233456788999999998877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++.+.   .+++..+..++.|++.+                       +.|||++|++|+|+++.|+.+.  
T Consensus        98 ~~~~~L~~~~~~~---~l~~~~~~~i~~~l~~a-----------------------l~~LH~~gi~H~dL~p~Nili~--  149 (293)
T cd06647          98 LAGGSLTDVVTET---CMDEGQIAAVCRECLQA-----------------------LEFLHSNQVIHRDIKSDNILLG--  149 (293)
T ss_pred             CCCCcHHHHHhhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEeeccCCHHHEEEc--
Confidence            9 89999998764   36777777777777777                       9999999999999999999876  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (293)
T cd06647         150 --------------------------------------------------------------------------------  149 (293)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   ....++|+|||++....   .......+++.|++||.+.+..++.++|+|||||++|++++|..||.
T Consensus       150 -------------~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~ll~~ll~g~~pf~  216 (293)
T cd06647         150 -------------MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMVEGEPPYL  216 (293)
T ss_pred             -------------CCCCEEEccCcceecccccccccccccCChhhcCchhhccCCCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                         13458999999775422   12234567889999999988888999999999999999999999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      ..+..+..
T Consensus       217 ~~~~~~~~  224 (293)
T cd06647         217 NENPLRAL  224 (293)
T ss_pred             CCChhhhe
Confidence            77654443

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.96  E-value=1.1e-29  Score=233.55  Aligned_cols=193  Identities=20%  Similarity=0.314  Sum_probs=162.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      .+||.|+||.||++.+..+++.||||.+... ....+.+.+|+.+++.++|+|      |+++++.+...++.|+||||+
T Consensus        28 ~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~------ii~~~~~~~~~~~~~lv~e~~  101 (292)
T cd06658          28 IKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHEN------VVDMYNSYLVGDELWVVMEFL  101 (292)
T ss_pred             hcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCc------HHHHHHheecCCeEEEEEeCC
Confidence            4799999999999999889999999998653 233456788999999999887      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++...   .+++..+..++.|++.+                       ++|||+++++|+|+++.|+.+.   
T Consensus       102 ~~~~L~~~~~~~---~l~~~~~~~~~~qi~~~-----------------------l~~LH~~~ivH~dlkp~Nill~---  152 (292)
T cd06658         102 EGGALTDIVTHT---RMNEEQIATVCLSVLRA-----------------------LSYLHNQGVIHRDIKSDSILLT---  152 (292)
T ss_pred             CCCcHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeecCCCHHHEEEc---
Confidence             88999887543   46777777777777777                       9999999999999999999886   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (292)
T cd06658         153 --------------------------------------------------------------------------------  152 (292)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                  ....++|+|||++.....   ......|++.|+|||.+.+..++.++|+||+|++++++++|..||..
T Consensus       153 ------------~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGvil~el~~g~~p~~~  220 (292)
T cd06658         153 ------------SDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMIDGEPPYFN  220 (292)
T ss_pred             ------------CCCCEEEccCcchhhcccccccCceeecCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                        134689999998764221   22345678899999999888889999999999999999999999987


Q ss_pred             cCCCc
Q psy2006         317 KTKTK  321 (351)
Q Consensus       317 ~~~~~  321 (351)
                      .+..+
T Consensus       221 ~~~~~  225 (292)
T cd06658         221 EPPLQ  225 (292)
T ss_pred             CCHHH
Confidence            65543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.96  E-value=1.2e-28  Score=226.14  Aligned_cols=198  Identities=20%  Similarity=0.290  Sum_probs=155.8

Q ss_pred             ccccCcccceEEEEEEeec-----CcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEV-----DSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~-----~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||+|+||.||+|.+...     ...+|+|.+...  ......+.+|+.+++.+ +|+|      |+++++++..++..
T Consensus        18 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~------i~~~~~~~~~~~~~   91 (293)
T cd05053          18 KPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN------IINLLGVCTQEGPL   91 (293)
T ss_pred             eEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCC------eeeEEEEEcCCCCe
Confidence            5799999999999997643     378999999753  22334577899999999 6777      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcC--------------CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcc
Q psy2006          74 CIAFEIL-GLSVFDFLKENN--------------YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYN  138 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~--------------~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  138 (351)
                      ++||||+ +++|.++++...              ...+++..+..++.|++.|                       |+||
T Consensus        92 ~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~a-----------------------l~~L  148 (293)
T cd05053          92 YVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARG-----------------------MEFL  148 (293)
T ss_pred             EEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHH-----------------------HHHH
Confidence            9999999 899999997642              1234444555555555555                       9999


Q ss_pred             ccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         139 NKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       139 H~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      |+.+++|+|+|+.|+.+.+                                                             
T Consensus       149 H~~~ivH~dlkp~Nil~~~-------------------------------------------------------------  167 (293)
T cd05053         149 ASKKCIHRDLAARNVLVTE-------------------------------------------------------------  167 (293)
T ss_pred             HHCCccccccceeeEEEcC-------------------------------------------------------------
Confidence            9999999999999998862                                                             


Q ss_pred             CCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCC
Q psy2006         219 PFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQ  293 (351)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~  293 (351)
                                                        ...++|+|||.+......     .....++..|+|||.+.+..++.
T Consensus       168 ----------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  213 (293)
T cd05053         168 ----------------------------------DHVMKIADFGLARDIHHIDYYRKTTNGRLPVKWMAPEALFDRVYTH  213 (293)
T ss_pred             ----------------------------------CCeEEeCccccccccccccceeccCCCCCCccccCHHHhccCCcCc
Confidence                                              346899999988653221     11223456799999998888999


Q ss_pred             ccceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         294 PCDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       294 ~~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      ++|+|||||++|++++ |..||.+.+..+.+
T Consensus       214 ~~Di~slG~il~el~~~g~~p~~~~~~~~~~  244 (293)
T cd05053         214 QSDVWSFGVLLWEIFTLGGSPYPGIPVEELF  244 (293)
T ss_pred             ccceeehhhHHHHHhcCCCCCCCCCCHHHHH
Confidence            9999999999999997 99999877655544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.96  E-value=3.4e-29  Score=232.03  Aligned_cols=200  Identities=20%  Similarity=0.307  Sum_probs=162.2

Q ss_pred             ccccCcccceEEEEEEee--cCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeE
Q psy2006           2 CSLNCVASNHVCTNVVYE--VDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~--~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~   73 (351)
                      ++||+|+||.||+|.+..  +++.||+|++....    ...+...+|+.+++.++|+|      |+++++++...  .++
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~   79 (316)
T cd07842           6 GCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHEN------VVSLVEVFLEHADKSV   79 (316)
T ss_pred             EEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCC------ccceEEEEeCCCCceE
Confidence            579999999999999988  89999999997632    23456778999999999887      99999999988  799


Q ss_pred             EEEEeccCCCHHHHHHhcCC---CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          74 CIAFEILGLSVFDFLKENNY---LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        74 ~lV~E~~g~sL~~~l~~~~~---~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      |+||||++++|.+++.....   ..+++..++.++.|++.+                       ++|||+++++|||+++
T Consensus        80 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~i~h~dlkp  136 (316)
T cd07842          80 YLLFDYAEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILNG-----------------------VHYLHSNWVLHRDLKP  136 (316)
T ss_pred             EEEEeCCCcCHHHHHHhhccCCCcCcCHHHHHHHHHHHHHH-----------------------HHHHHhCCEeeCCCCH
Confidence            99999998899888765421   256777777777777777                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .|+.+..           .                                                             
T Consensus       137 ~Nil~~~-----------~-------------------------------------------------------------  144 (316)
T cd07842         137 ANILVMG-----------E-------------------------------------------------------------  144 (316)
T ss_pred             HHEEEcC-----------C-------------------------------------------------------------
Confidence            9998761           0                                                             


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecC-CCCCccceeeeeee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCI  303 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~  303 (351)
                                         ......+||+|||++......      .....+++.|+|||.+.+. .++.++|+|||||+
T Consensus       145 -------------------~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~  205 (316)
T cd07842         145 -------------------GPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYRAPELLLGARHYTKAIDIWAIGCI  205 (316)
T ss_pred             -------------------CCccceEEECCCccccccCCCcccccccCCccccccccCHHHHhCCCCCCcHHHHHHHHHH
Confidence                               002467999999988653221      1234678899999988764 57889999999999


Q ss_pred             eEeeccccccccccCCCc
Q psy2006         304 IFELYLGITLMARKTKTK  321 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~~~  321 (351)
                      ++++++|.+||.+.+...
T Consensus       206 l~~l~~~~~~~~~~~~~~  223 (316)
T cd07842         206 FAELLTLEPIFKGREAKI  223 (316)
T ss_pred             HHHHHhcCCCCcCCcccc
Confidence            999999999998776543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.96  E-value=7.8e-29  Score=224.73  Aligned_cols=197  Identities=13%  Similarity=0.132  Sum_probs=154.7

Q ss_pred             ccccCcccceEEEEEEe--ecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVY--EVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~--~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||.||+|.+.  .++..+|+|.+....  .....+.+|+.+++.++|+|      |+++++++......++||
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~   74 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSN------LLQCLGQCTEVTPYLLVM   74 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCC------EeeEEEEEcCCCCcEEEE
Confidence            57999999999999864  345789999987532  22346778999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCC---CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          78 EIL-GLSVFDFLKENNY---LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~---~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      ||+ +++|.+++.....   ...++..++.++.|++.+                       +.|||+.+++|+|+|+.|+
T Consensus        75 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~i~H~dlkp~ni  131 (269)
T cd05087          75 EFCPLGDLKGYLRSCRKAELMTPDPTTLQRMACEIALG-----------------------LLHLHKNNFIHSDLALRNC  131 (269)
T ss_pred             ECCCCCcHHHHHHHhhhcccccccHHHHHHHHHHHHHH-----------------------HHHHHHCCEeccccCcceE
Confidence            999 8999999976431   234455666667777766                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       132 l~~-----------------------------------------------------------------------------  134 (269)
T cd05087         132 LLT-----------------------------------------------------------------------------  134 (269)
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            876                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecC-------CCCCccceeeee
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILEL-------GWAQPCDVWSIG  301 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~-------~~~~~~DiwslG  301 (351)
                                        ....++|+|||.+.....     ......+++.|+|||++.+.       .++.++|+||+|
T Consensus       135 ------------------~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG  196 (269)
T cd05087         135 ------------------ADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEVHGNLLVVDQTKESNVWSLG  196 (269)
T ss_pred             ------------------CCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccccccccccCCCccchhHHHH
Confidence                              134689999998754221     11234567889999988642       357899999999


Q ss_pred             eeeEeecc-ccccccccCCCce
Q psy2006         302 CIIFELYL-GITLMARKTKTKY  322 (351)
Q Consensus       302 ~~l~~l~t-G~~pf~~~~~~~~  322 (351)
                      |++|++++ |..||...+..+.
T Consensus       197 ~~l~el~~~g~~p~~~~~~~~~  218 (269)
T cd05087         197 VTIWELFELGSQPYRHLSDEQV  218 (269)
T ss_pred             HHHHHHHhCCCCCCCCCChHHH
Confidence            99999996 9999977665543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.96  E-value=5.5e-29  Score=225.50  Aligned_cols=193  Identities=21%  Similarity=0.295  Sum_probs=158.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ..||+|+||.||+|.+..+++.||+|.+.... ...+.+.+|+.+++.++|+|      |+++++++..+++.++|+||+
T Consensus        14 ~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e~~   87 (268)
T cd06624          14 VVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRN------IVQYLGSDSENGFFKIFMEQV   87 (268)
T ss_pred             EEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCC------eeeeeeeeccCCEEEEEEecC
Confidence            36999999999999998899999999987542 34557889999999999888      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCC--chHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          81 -GLSVFDFLKENNYLPY--SLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~--~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                       +++|.+++.... ..+  ++..+..++.|++.+                       +.|||+++++|+|+++.|+.+.+
T Consensus        88 ~~~~L~~~l~~~~-~~~~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~i~h~dl~p~nil~~~  143 (268)
T cd06624          88 PGGSLSALLRSKW-GPLKDNEQTIIFYTKQILEG-----------------------LKYLHDNQIVHRDIKGDNVLVNT  143 (268)
T ss_pred             CCCCHHHHHHHhc-ccCCCcHHHHHHHHHHHHHH-----------------------HHHHHHCCEeecCCCHHHEEEcC
Confidence             899999998653 123  566666667777766                       99999999999999999998751


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (268)
T cd06624         144 --------------------------------------------------------------------------------  143 (268)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecC--CCCCccceeeeeeeeEeeccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILEL--GWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                    ....++|+|||.+....   .......|++.|+|||.+...  .++.++|+||+|++++++++|..
T Consensus       144 --------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~~Dv~slGvvl~~l~~g~~  209 (268)
T cd06624         144 --------------YSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPRGYGAPADIWSLGCTIVEMATGKP  209 (268)
T ss_pred             --------------CCCeEEEecchhheecccCCCccccCCCCccccChhhhccccccCCchhhhHHHHHHHHHHHhCCC
Confidence                          12468999999876432   122334678899999998654  37889999999999999999999


Q ss_pred             cccccC
Q psy2006         313 LMARKT  318 (351)
Q Consensus       313 pf~~~~  318 (351)
                      ||....
T Consensus       210 p~~~~~  215 (268)
T cd06624         210 PFIELG  215 (268)
T ss_pred             CCcccc
Confidence            997644

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.96  E-value=6.9e-29  Score=225.70  Aligned_cols=198  Identities=16%  Similarity=0.209  Sum_probs=158.7

Q ss_pred             ccccCcccceEEEEEEeec-----CcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEV-----DSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~-----~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++||+|+||.||+|.+...     ++.||+|.+....  .....+.+|+.+++.+.|++      |+++++++....+.+
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~~~~~   85 (277)
T cd05032          12 RELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHH------VVRLLGVVSTGQPTL   85 (277)
T ss_pred             eEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCc------eeEEEEEEcCCCCcE
Confidence            5799999999999998643     4899999987432  23346778999999998877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCC--------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccc
Q psy2006          75 IAFEIL-GLSVFDFLKENNY--------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREV  145 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~--------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h  145 (351)
                      +||||+ +++|.+++.....        ..+++..+..++.|++.|                       |.|||+.+++|
T Consensus        86 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H  142 (277)
T cd05032          86 VVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADG-----------------------MAYLAAKKFVH  142 (277)
T ss_pred             EEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccc
Confidence            999999 8999999976431        124455566666666666                       99999999999


Q ss_pred             cccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         146 RRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       146 ~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +|+++.|+.+.+                                                                    
T Consensus       143 ~di~p~nill~~--------------------------------------------------------------------  154 (277)
T cd05032         143 RDLAARNCMVAE--------------------------------------------------------------------  154 (277)
T ss_pred             cccChheEEEcC--------------------------------------------------------------------
Confidence            999999998862                                                                    


Q ss_pred             chhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeee
Q psy2006         226 SSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSI  300 (351)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  300 (351)
                                                 ...++|+|||++.....     ......++..|+|||.+.+..++.++|+|||
T Consensus       155 ---------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  207 (277)
T cd05032         155 ---------------------------DLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTKSDVWSF  207 (277)
T ss_pred             ---------------------------CCCEEECCcccchhhccCcccccCCCCCccccccCHHHHhcCCCCcccchHHH
Confidence                                       34689999998764221     1223456778999999988888999999999


Q ss_pred             eeeeEeecc-ccccccccCCCcee
Q psy2006         301 GCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       301 G~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      ||++|++++ |..||...+..+.+
T Consensus       208 G~il~el~t~g~~p~~~~~~~~~~  231 (277)
T cd05032         208 GVVLWEMATLAEQPYQGLSNEEVL  231 (277)
T ss_pred             HHHHHHhhccCCCCCccCCHHHHH
Confidence            999999998 99999877655543

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.96  E-value=1.2e-28  Score=224.56  Aligned_cols=201  Identities=16%  Similarity=0.103  Sum_probs=158.0

Q ss_pred             ccccCcccceEEEEEEeec------------------------CcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCC
Q psy2006           2 CSLNCVASNHVCTNVVYEV------------------------DSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNG   56 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~------------------------~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g   56 (351)
                      .+||+|+||.||+|....+                        ...||+|++.... .....+.+|+.+++.++|+|   
T Consensus         1 ~~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~n---   77 (274)
T cd05076           1 AHLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIH---   77 (274)
T ss_pred             CCcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCC---
Confidence            3799999999999985432                        2468999986532 22345677899999999888   


Q ss_pred             CcceeeeeeeEeeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhh
Q psy2006          57 RHLCVKMLDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAV  135 (351)
Q Consensus        57 ~~~Iv~l~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l  135 (351)
                         |+++++++..+...++||||+ +++|.+++.... ..+++..+..++.|++.|                       |
T Consensus        78 ---iv~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~~-----------------------l  130 (274)
T cd05076          78 ---LAFVHGVCVRGSENIMVEEFVEHGPLDVCLRKEK-GRVPVAWKITVAQQLASA-----------------------L  130 (274)
T ss_pred             ---eeeEEEEEEeCCceEEEEecCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------H
Confidence               999999999999999999999 889988887643 357788888888888888                       9


Q ss_pred             hccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhh
Q psy2006         136 DYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEA  215 (351)
Q Consensus       136 ~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~  215 (351)
                      +|||+++++|||+|+.|+.+.+.|....                                                    
T Consensus       131 ~~lH~~~iiH~dlkp~Nill~~~~~~~~----------------------------------------------------  158 (274)
T cd05076         131 SYLEDKNLVHGNVCAKNILLARLGLAEG----------------------------------------------------  158 (274)
T ss_pred             HHHHcCCccCCCCCcccEEEeccCcccC----------------------------------------------------
Confidence            9999999999999999999885443200                                                    


Q ss_pred             hcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCc
Q psy2006         216 LRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQP  294 (351)
Q Consensus       216 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~  294 (351)
                                                          ....++++|||.+..... .....+++.|+|||.+.+ ..++.+
T Consensus       159 ------------------------------------~~~~~kl~d~g~~~~~~~-~~~~~~~~~~~aPe~~~~~~~~~~~  201 (274)
T cd05076         159 ------------------------------------TSPFIKLSDPGVSFTALS-REERVERIPWIAPECVPGGNSLSTA  201 (274)
T ss_pred             ------------------------------------ccceeeecCCcccccccc-ccccccCCcccCchhhcCCCCCCcH
Confidence                                                123478999998754221 223456788999998875 457899


Q ss_pred             cceeeeeeeeEeec-cccccccccCCCc
Q psy2006         295 CDVWSIGCIIFELY-LGITLMARKTKTK  321 (351)
Q Consensus       295 ~DiwslG~~l~~l~-tG~~pf~~~~~~~  321 (351)
                      +|+|||||++|+++ +|..||...+..+
T Consensus       202 ~Dv~slG~~l~el~~~g~~p~~~~~~~~  229 (274)
T cd05076         202 ADKWSFGTTLLEICFDGEVPLKERTPSE  229 (274)
T ss_pred             HHHHHHHHHHHHHHhCCCCCccccChHH
Confidence            99999999999984 7999998766544

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=8.9e-29  Score=222.76  Aligned_cols=194  Identities=16%  Similarity=0.226  Sum_probs=158.6

Q ss_pred             ccccCcccceEEEEEEeecC---cEEEEEEecchhh--hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVD---SVVALKIIKNVEK--YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~---~~vAiK~~~~~~~--~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||+|+||.||+|++...+   ..||+|.+.....  ..+.+.+|+++++.+.|++      |+++++++. ..+.++|
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~-~~~~~~v   73 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPC------IVRLIGVCK-GEPLMLV   73 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCC------eeeEEEEEc-CCceEEE
Confidence            57999999999999876554   7999999975432  4456788999999998877      999999876 4578999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++....  .+++..+..++.|++.+                       +.|||+.+++|+|+++.|+.+
T Consensus        74 ~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lh~~~i~H~di~p~nili  128 (257)
T cd05060          74 MELAPLGPLLKYLKKRR--EIPVSDLKELAHQVAMG-----------------------MAYLESKHFVHRDLAARNVLL  128 (257)
T ss_pred             EEeCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHH-----------------------HHHHhhcCeeccCcccceEEE
Confidence            9999 889999998765  57788888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       129 ~~------------------------------------------------------------------------------  130 (257)
T cd05060         129 VN------------------------------------------------------------------------------  130 (257)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            62                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccccc------cccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHS------TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                       ...++|+|||.+........      ...++..|+|||.+.+..++.++|+|||||++|++++
T Consensus       131 -----------------~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~~~~  193 (257)
T cd05060         131 -----------------RHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSKSDVWSYGVTLWEAFS  193 (257)
T ss_pred             -----------------CCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCccchHHHHHHHHHHHHc
Confidence                             34689999998765322211      1122357999999988889999999999999999998


Q ss_pred             -ccccccccCCCce
Q psy2006         310 -GITLMARKTKTKY  322 (351)
Q Consensus       310 -G~~pf~~~~~~~~  322 (351)
                       |..||...+..+.
T Consensus       194 ~g~~p~~~~~~~~~  207 (257)
T cd05060         194 YGAKPYGEMKGAEV  207 (257)
T ss_pred             CCCCCcccCCHHHH
Confidence             9999987665543

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.96  E-value=6.9e-29  Score=224.49  Aligned_cols=194  Identities=20%  Similarity=0.329  Sum_probs=162.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      ..||.|+||.||+|.+..+++.||+|.+....          ...+.+.+|+.+++.++|++      |+++++++...+
T Consensus         6 ~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~   79 (267)
T cd06628           6 ALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN------IVQYLGSSLDAD   79 (267)
T ss_pred             ceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCC------eeeEEEEEEeCC
Confidence            46999999999999998899999999986421          11245778999999999887      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      +.++||||+ +++|.+++....  .+++..++.++.|++.+                       |+|||+.|++|+|+++
T Consensus        80 ~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~~l~~~-----------------------l~~lH~~~ivH~di~p  134 (267)
T cd06628          80 HLNIFLEYVPGGSVAALLNNYG--AFEETLVRNFVRQILKG-----------------------LNYLHNRGIIHRDIKG  134 (267)
T ss_pred             ccEEEEEecCCCCHHHHHHhcc--CccHHHHHHHHHHHHHH-----------------------HHHHHhcCcccccCCH
Confidence            999999999 889999998764  57788888888888888                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .|+.+.+                                                                         
T Consensus       135 ~nil~~~-------------------------------------------------------------------------  141 (267)
T cd06628         135 ANILVDN-------------------------------------------------------------------------  141 (267)
T ss_pred             HHEEEcC-------------------------------------------------------------------------
Confidence            9987762                                                                         


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecc---------ccccccccceeeCceeeecCCCCCccceeeee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIG  301 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  301 (351)
                                            ...++|+|||.+.....         ......|+..|+|||.+.+..++.++|+||+|
T Consensus       142 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG  199 (267)
T cd06628         142 ----------------------KGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVKQTSYTRKADIWSLG  199 (267)
T ss_pred             ----------------------CCCEEecccCCCcccccccccCCccccccccCCCcCccChhHhccCCCCchhhhHHHH
Confidence                                  34588889988754321         11224577899999999888889999999999


Q ss_pred             eeeEeeccccccccccCCCc
Q psy2006         302 CIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       302 ~~l~~l~tG~~pf~~~~~~~  321 (351)
                      |+++++++|..||...+..+
T Consensus       200 ~il~~l~~g~~p~~~~~~~~  219 (267)
T cd06628         200 CLVVEMLTGKHPFPDCTQLQ  219 (267)
T ss_pred             HHHHHHhhCCCCCCCccHHH
Confidence            99999999999998765543

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.96  E-value=4e-29  Score=228.17  Aligned_cols=212  Identities=13%  Similarity=0.209  Sum_probs=155.9

Q ss_pred             ccccCcccceEEEEEEee-----cCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYE-----VDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++||.|+||+||+|.+..     .++.||+|++....  ...+.+..|+.+++.+.|+|      |+++++++...+..+
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~------iv~~~~~~~~~~~~~   84 (283)
T cd05091          11 EELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPN------IVCLLGVVTKEQPLS   84 (283)
T ss_pred             HHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCC------cCeEEEEEcCCCceE
Confidence            679999999999998753     35789999997532  23456788999999999887      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +++||+ +++|.+++....... ......       . .......++...+..++.|++.||+|+|++|++|||+|+.|+
T Consensus        85 ~~~e~~~~~~l~~~l~~~~~~~-~~~~~~-------~-~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Ni  155 (283)
T cd05091          85 MIFSYCSHSDLHEFLVMRSPHS-DVGSTD-------D-DKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNV  155 (283)
T ss_pred             EEEEcCCCCcHHHHHHhcCCCc-cccccc-------c-ccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhhe
Confidence            999999 889999986432100 000000       0 000001233334444444555559999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.|                                                                            
T Consensus       156 l~~~----------------------------------------------------------------------------  159 (283)
T cd05091         156 LVFD----------------------------------------------------------------------------  159 (283)
T ss_pred             EecC----------------------------------------------------------------------------
Confidence            8762                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                         ...+||+|||++.....     ......+++.|+|||.+.+..++.++|+||+||++++++
T Consensus       160 -------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~  220 (283)
T cd05091         160 -------------------KLNVKISDLGLFREVYAADYYKLMGNSLLPIRWMSPEAIMYGKFSIDSDIWSYGVVLWEVF  220 (283)
T ss_pred             -------------------CCceEecccccccccccchheeeccCccCCccccCHHHHhcCCCCcchhHHHHHHHHHHHH
Confidence                               24589999998764211     112344567899999998888999999999999999999


Q ss_pred             c-ccccccccCCCcee
Q psy2006         309 L-GITLMARKTKTKYF  323 (351)
Q Consensus       309 t-G~~pf~~~~~~~~~  323 (351)
                      + |..||.+.+..+.+
T Consensus       221 ~~g~~p~~~~~~~~~~  236 (283)
T cd05091         221 SYGLQPYCGYSNQDVI  236 (283)
T ss_pred             cCCCCCCCCCCHHHHH
Confidence            8 89999887665544

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.96  E-value=7.1e-29  Score=223.16  Aligned_cols=197  Identities=15%  Similarity=0.186  Sum_probs=162.9

Q ss_pred             ccccCcccceEEEEEEee-cC--cEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYE-VD--SVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-~~--~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||.|+||.||+|.+.. .+  ..||+|.+....  ...+.+.+|+++++++.|+|      |+++++.+.. ...++|
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~-~~~~~v   73 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHEN------LIRLYGVVLT-HPLMMV   73 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCC------ccceeEEEcC-CeEEEE
Confidence            579999999999999865 33  369999997643  34567789999999999887      9999999988 899999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.......+++..+..++.|++.|                       |.|||+++++|+|+++.|+.+
T Consensus        74 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~-----------------------L~~lH~~~i~H~di~p~nil~  130 (257)
T cd05040          74 TELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANG-----------------------MRYLESKRFIHRDLAARNILL  130 (257)
T ss_pred             EEecCCCcHHHHHHhcccccCcHHHHHHHHHHHHHH-----------------------HHHHHhCCccccccCcccEEE
Confidence            9999 8999999987643457777888888888877                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       131 ~-------------------------------------------------------------------------------  131 (257)
T cd05040         131 A-------------------------------------------------------------------------------  131 (257)
T ss_pred             e-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                      ..+.+||+|||.+......      .....++..|+|||.+.+..++.++|+|||||++++|++
T Consensus       132 ----------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Di~slG~~l~el~t  195 (257)
T cd05040         132 ----------------SDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHASDVWMFGVTLWEMFT  195 (257)
T ss_pred             ----------------cCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCchhhhHHHHHHHHHHHh
Confidence                            2356899999987653221      123456778999999988889999999999999999998


Q ss_pred             -ccccccccCCCcee
Q psy2006         310 -GITLMARKTKTKYF  323 (351)
Q Consensus       310 -G~~pf~~~~~~~~~  323 (351)
                       |..||...+..+.+
T Consensus       196 ~g~~p~~~~~~~~~~  210 (257)
T cd05040         196 YGEEPWAGLSGSQIL  210 (257)
T ss_pred             CCCCCCCCCCHHHHH
Confidence             99999877665544

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.96  E-value=5.4e-29  Score=227.21  Aligned_cols=197  Identities=22%  Similarity=0.359  Sum_probs=163.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||.|++|.||+|++..+++.||+|++....  ...+.+.+|+.+++.+.|+|      |+++++++...++.++|||
T Consensus         5 ~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e   78 (284)
T cd07836           5 LEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHEN------IVRLHDVIHTENKLMLVFE   78 (284)
T ss_pred             eeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCC------EeeeeeeEeeCCcEEEEEe
Confidence            368999999999999998899999999997542  22356678999999998877      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcC-CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 ILGLSVFDFLKENN-YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~g~sL~~~l~~~~-~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+.++|.+++.... ...+++..+..++.|++.+                       |+|||+.|++|+|+++.|+.+.+
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~h~dl~p~ni~~~~  135 (284)
T cd07836          79 YMDKDLKKYMDTHGVRGALDPNTVKSFTYQLLKG-----------------------IAFCHENRVLHRDLKPQNLLINK  135 (284)
T ss_pred             cCCccHHHHHHhcCCCCCcCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeCCCCHHHEEECC
Confidence            99889999887653 2357788888888888887                       99999999999999999998762


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (284)
T cd07836         136 --------------------------------------------------------------------------------  135 (284)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ...++++|||.+.....   ......+++.|++||.+.+. .++.++|+||+||+++++++|..|
T Consensus       136 ---------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~  200 (284)
T cd07836         136 ---------------RGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVGCIMAEMITGRPL  200 (284)
T ss_pred             ---------------CCcEEEeecchhhhhcCCccccccccccccccChHHhcCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence                           34689999998764322   12334567889999988764 468899999999999999999999


Q ss_pred             ccccCCCc
Q psy2006         314 MARKTKTK  321 (351)
Q Consensus       314 f~~~~~~~  321 (351)
                      |.+.+..+
T Consensus       201 ~~~~~~~~  208 (284)
T cd07836         201 FPGTNNED  208 (284)
T ss_pred             CCCCCcHH
Confidence            98776544

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.96  E-value=7.3e-29  Score=227.32  Aligned_cols=197  Identities=18%  Similarity=0.241  Sum_probs=158.0

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +.||+|+||+||++.+.     .++..+|+|.+... ....+.+.+|+.+++.+.|++      |+++++++...+..++
T Consensus        11 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~l   84 (288)
T cd05093          11 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEH------IVKFYGVCVEGDPLIM   84 (288)
T ss_pred             cccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCC------cceEEEEEecCCccEE
Confidence            57999999999999853     35677999999753 334557889999999999877      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCC-----------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccc
Q psy2006          76 AFEIL-GLSVFDFLKENNY-----------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKR  143 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~-----------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i  143 (351)
                      ||||+ +++|.+++.....           ..+++..+..++.|++.+                       |+|||++|+
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~a-----------------------L~~lH~~~i  141 (288)
T cd05093          85 VFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAG-----------------------MVYLASQHF  141 (288)
T ss_pred             EEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCe
Confidence            99999 8999999976531           135555666666666655                       999999999


Q ss_pred             cccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         144 EVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       144 ~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                      +|||+||.|+.+.+                                                                  
T Consensus       142 ~H~dlkp~Nili~~------------------------------------------------------------------  155 (288)
T cd05093         142 VHRDLATRNCLVGE------------------------------------------------------------------  155 (288)
T ss_pred             eecccCcceEEEcc------------------------------------------------------------------
Confidence            99999999998762                                                                  


Q ss_pred             CCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCcccee
Q psy2006         224 LPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVW  298 (351)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Diw  298 (351)
                                                   ...++|+|||++......     .....+++.|+|||.+.+..++.++|+|
T Consensus       156 -----------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiw  206 (288)
T cd05093         156 -----------------------------NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVW  206 (288)
T ss_pred             -----------------------------CCcEEeccCCccccccCCceeecCCCCCccccccCHHHhccCCCCchhhHH
Confidence                                         346899999987643211     1233456789999999888889999999


Q ss_pred             eeeeeeEeecc-ccccccccCCCce
Q psy2006         299 SIGCIIFELYL-GITLMARKTKTKY  322 (351)
Q Consensus       299 slG~~l~~l~t-G~~pf~~~~~~~~  322 (351)
                      ||||++++|++ |..||...+..+.
T Consensus       207 slG~il~~l~t~g~~p~~~~~~~~~  231 (288)
T cd05093         207 SLGVVLWEIFTYGKQPWYQLSNNEV  231 (288)
T ss_pred             HHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            99999999998 9999987665443

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=5.8e-29  Score=224.25  Aligned_cols=197  Identities=20%  Similarity=0.210  Sum_probs=164.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||.|+||+||+|.+. .++.||+|.+.......+.+.+|+.+++.+.|++      |+++++++......++||||+ 
T Consensus        12 ~~ig~g~~~~v~~~~~~-~~~~~~vK~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~v~e~~~   84 (261)
T cd05034          12 RKLGAGQFGEVWMGTWN-GTTKVAVKTLKPGTMSPEAFLQEAQIMKKLRHDK------LVQLYAVCSEEEPIYIVTEYMS   84 (261)
T ss_pred             eeeccCcceEEEEEEEc-CCceEEEEEecCCccCHHHHHHHHHHHhhCCCCC------EeeeeeeeecCCceEEEEeccC
Confidence            57999999999999974 5688999999865555677889999999999877      999999999989999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.......+++..+..++.|++.+                       +.|||+.+++|+|++++|+.+.+   
T Consensus        85 ~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~a-----------------------l~~lh~~~i~h~di~p~nili~~---  138 (261)
T cd05034          85 KGSLLDFLKSGEGKKLRLPQLVDMAAQIAEG-----------------------MAYLESRNYIHRDLAARNILVGE---  138 (261)
T ss_pred             CCCHHHHHhccccCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCcchheEEEcC---
Confidence            8899999987654567888888888888888                       99999999999999999998862   


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (261)
T cd05034         139 --------------------------------------------------------------------------------  138 (261)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                  ...++++|||.+.......    ....++..|+|||.+.+..++.++|+||+||+++++++ |..||.
T Consensus       139 ------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~  206 (261)
T cd05034         139 ------------NLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRFTIKSDVWSFGILLTEIVTYGRVPYP  206 (261)
T ss_pred             ------------CCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCCcCchhHHHHHHHHHHHHHhCCCCCCC
Confidence                        3468999999876532211    12233567999999988888999999999999999998 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+.+
T Consensus       207 ~~~~~~~~  214 (261)
T cd05034         207 GMTNREVL  214 (261)
T ss_pred             CCCHHHHH
Confidence            77655544

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.96  E-value=6.8e-29  Score=224.52  Aligned_cols=193  Identities=20%  Similarity=0.255  Sum_probs=162.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||.|+||.||+|.+..+++.||+|.+...    ......+.+|+++++.+.|+|      |+++++.|..++..++||
T Consensus         8 ~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~------i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           8 KKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN------VIKYYASFIEDNELNIVL   81 (267)
T ss_pred             hhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCc------hhhhhheeEeCCeEEEEE
Confidence            5799999999999999899999999988642    223456778999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          78 EIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        78 E~~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||+ +++|.+++...  ....+++..+..++.|++.+                       +.|||+.|++|+|+++.|+.
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------l~~LH~~~i~H~dl~p~nil  138 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSA-----------------------LEHMHSRRVMHRDIKPANVF  138 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEE
Confidence            999 88999998753  22356777888888888877                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       139 i~------------------------------------------------------------------------------  140 (267)
T cd08229         139 IT------------------------------------------------------------------------------  140 (267)
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            76                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                       ....++++|||++.....   ......|++.|+|||.+.+..++.++|+||||+++|++++|.
T Consensus       141 -----------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~  203 (267)
T cd08229         141 -----------------ATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ  203 (267)
T ss_pred             -----------------CCCCEEECcchhhhccccCCcccccccCCcCccCHHHhcCCCccchhhHHHHHHHHHHHHhCC
Confidence                             134689999998765322   122356888999999998888999999999999999999999


Q ss_pred             ccccccC
Q psy2006         312 TLMARKT  318 (351)
Q Consensus       312 ~pf~~~~  318 (351)
                      .||.+..
T Consensus       204 ~p~~~~~  210 (267)
T cd08229         204 SPFYGDK  210 (267)
T ss_pred             CCccccc
Confidence            9997654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.96  E-value=6.6e-29  Score=226.15  Aligned_cols=198  Identities=16%  Similarity=0.203  Sum_probs=156.3

Q ss_pred             ccccCcccceEEEEEEee-----cCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYE-----VDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++||+|+||+||+|.+..     +++.||+|++....  .....+.+|+.+++.++|+|      |+++++++....+.+
T Consensus        12 ~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~------iv~~~~~~~~~~~~~   85 (277)
T cd05062          12 RELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHH------VVRLLGVVSQGQPTL   85 (277)
T ss_pred             eeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC------eeeEEEEEcCCCCeE
Confidence            579999999999998652     45789999986432  23456788999999998877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCC--------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccc
Q psy2006          75 IAFEIL-GLSVFDFLKENNY--------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREV  145 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~--------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h  145 (351)
                      +||||+ +++|.+++.....        ..++...+..++.|++.+                       |.|||+.+++|
T Consensus        86 lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------l~~lH~~~~vH  142 (277)
T cd05062          86 VIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADG-----------------------MAYLNANKFVH  142 (277)
T ss_pred             EEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccc
Confidence            999999 8999999976431        123444555566666666                       99999999999


Q ss_pred             cccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         146 RRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       146 ~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +|+|+.|+.+.+                                                                    
T Consensus       143 ~dlkp~Nil~~~--------------------------------------------------------------------  154 (277)
T cd05062         143 RDLAARNCMVAE--------------------------------------------------------------------  154 (277)
T ss_pred             CCcchheEEEcC--------------------------------------------------------------------
Confidence            999999998862                                                                    


Q ss_pred             chhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeee
Q psy2006         226 SSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSI  300 (351)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  300 (351)
                                                 ...++|+|||++......     .....+++.|+|||.+.+..++.++|+|||
T Consensus       155 ---------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  207 (277)
T cd05062         155 ---------------------------DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSF  207 (277)
T ss_pred             ---------------------------CCCEEECCCCCccccCCcceeecCCCCccCHhhcChhHhhcCCcCchhHHHHH
Confidence                                       346899999987542211     122345678999999988889999999999


Q ss_pred             eeeeEeecc-ccccccccCCCcee
Q psy2006         301 GCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       301 G~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      ||++|++++ |..||.+.+..+.+
T Consensus       208 G~~l~el~~~~~~p~~~~~~~~~~  231 (277)
T cd05062         208 GVVLWEIATLAEQPYQGMSNEQVL  231 (277)
T ss_pred             HHHHHHHHcCCCCCCCCCCHHHHH
Confidence            999999998 78999877655443

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.96  E-value=1.1e-28  Score=236.22  Aligned_cols=220  Identities=19%  Similarity=0.226  Sum_probs=164.5

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecchh--hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNVE--KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      ++||+|+||.||+|+++     ..++.||+|++....  ...+.+.+|+++|..+. |+|      |+++++++..++++
T Consensus        43 ~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~n------iv~~~~~~~~~~~~  116 (401)
T cd05107          43 RTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLN------IVNLLGACTKGGPI  116 (401)
T ss_pred             hhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCC------eEEEEEEEccCCCc
Confidence            68999999999999964     345789999997532  22346778999999997 766      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCch-----------------------------------------H-----------H
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSL-----------------------------------------D-----------Q  100 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~-----------------------------------------~-----------~  100 (351)
                      ++||||+ +|+|.+++++........                                         .           .
T Consensus       117 ~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (401)
T cd05107         117 YIITEYCRYGDLVDYLHRNKHTFLQYYLDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMK  196 (401)
T ss_pred             EEEEeccCCCcHHHHHHhccccchhhhcccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcch
Confidence            9999999 999999998753210000                                         0           0


Q ss_pred             HHHHHHHHHHh---------------------hhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006         101 VRHMSYQLIYA---------------------KENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus       101 ~~~~~~ql~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                      ......++..+                     ..+....+++..+..++.|++.||.|||+.+++|||+|+.|+.+.+  
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl~~--  274 (401)
T cd05107         197 GTVKYADIESSNYESPYDQYLPSAPERTRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICE--  274 (401)
T ss_pred             hhhhhhhhhccCcCCchhhhhcccCCCcchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEEeC--
Confidence            00000000000                     0012235677888899999999999999999999999999998862  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       275 --------------------------------------------------------------------------------  274 (401)
T cd05107         275 --------------------------------------------------------------------------------  274 (401)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITL  313 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~p  313 (351)
                                   ...++|+|||++.....     ......+++.|+|||.+.+..++.++|+|||||+++++++ |..|
T Consensus       275 -------------~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P  341 (401)
T cd05107         275 -------------GKLVKICDFGLARDIMRDSNYISKGSTFLPLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTP  341 (401)
T ss_pred             -------------CCEEEEEecCcceecccccccccCCCcCCCCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCC
Confidence                         34589999998864221     1123456788999999988888999999999999999998 8999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |......+.
T Consensus       342 ~~~~~~~~~  350 (401)
T cd05107         342 YPELPMNEQ  350 (401)
T ss_pred             CCCCCchHH
Confidence            977654443

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.96  E-value=4.4e-29  Score=224.73  Aligned_cols=192  Identities=21%  Similarity=0.289  Sum_probs=165.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||.|+||.||+|.+..+++.||+|++....    ...+.+.+|++++++++|+|      |+++++.|..+.+.|+|+
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~   79 (258)
T cd05578           6 RVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPF------LVNLWYSFQDEENMYLVV   79 (258)
T ss_pred             EEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCC------hHHHHHhhcCCCeEEEEE
Confidence            57999999999999998899999999997532    33457788999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++...  ..+++..+..++.|++.+                       |.|||+.+++|+|+++.|+.+.
T Consensus        80 e~~~~~~L~~~l~~~--~~l~~~~~~~~~~~i~~~-----------------------l~~lh~~~i~h~dl~~~nil~~  134 (258)
T cd05578          80 DLLLGGDLRYHLSQK--VKFSEEQVKFWICEIVLA-----------------------LEYLHSKGIIHRDIKPDNILLD  134 (258)
T ss_pred             eCCCCCCHHHHHHhc--CCcCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccCCCHHHeEEc
Confidence            999 99999999776  357788888888888888                       9999999999999999999876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (258)
T cd05578         135 --------------------------------------------------------------------------------  134 (258)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                     ....++|+|||.+.....  ......|+..|+|||.+....++.++|+||+|+++|++++|..||
T Consensus       135 ---------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~  199 (258)
T cd05578         135 ---------------EQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRPY  199 (258)
T ss_pred             ---------------CCCCEEEeecccccccCCCccccccCCChhhcCHHHHcccCCCCcccchhhHHHHHHHHhCCCCC
Confidence                           234689999998765322  223456788999999998888899999999999999999999999


Q ss_pred             cccCC
Q psy2006         315 ARKTK  319 (351)
Q Consensus       315 ~~~~~  319 (351)
                      ...+.
T Consensus       200 ~~~~~  204 (258)
T cd05578         200 RGHSR  204 (258)
T ss_pred             CCCCc
Confidence            87764

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.96  E-value=1.5e-28  Score=224.42  Aligned_cols=191  Identities=21%  Similarity=0.210  Sum_probs=155.4

Q ss_pred             CccccCcccceEEEEE----EeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC--e
Q psy2006           1 MCSLNCVASNHVCTNV----VYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--H   72 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~----~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~--~   72 (351)
                      ++.||.|+||+||++.    ...+++.||+|++....  .....+.+|+++++.++|+|      |+++++++....  .
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~   82 (283)
T cd05080           9 IRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHEN------IVKYKGCCSEQGGKG   82 (283)
T ss_pred             ceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCC------EeeEEEEEecCCCce
Confidence            4689999999998865    33478899999997542  23456788999999999887      999999887643  6


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +++||||+ +++|.+++...   .+++..+..++.|++.+                       |+|||+++++|+|+|+.
T Consensus        83 ~~lv~e~~~~~~l~~~~~~~---~l~~~~~~~i~~~l~~~-----------------------l~~lH~~~i~H~dlkp~  136 (283)
T cd05080          83 LQLIMEYVPLGSLRDYLPKH---KLNLAQLLLFAQQICEG-----------------------MAYLHSQHYIHRDLAAR  136 (283)
T ss_pred             EEEEecCCCCCCHHHHHHHc---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccccChh
Confidence            89999999 89999998764   37888888888888888                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.                                                                           
T Consensus       137 Nili~---------------------------------------------------------------------------  141 (283)
T cd05080         137 NVLLD---------------------------------------------------------------------------  141 (283)
T ss_pred             eEEEc---------------------------------------------------------------------------
Confidence            99876                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceecccc------ccccccceeeCceeeecCCCCCccceeeeeeeeE
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~  305 (351)
                                          ....++|+|||++.......      ....++..|+|||.+....++.++|+|||||+++
T Consensus       142 --------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~slG~~l~  201 (283)
T cd05080         142 --------------------NDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYASDVWSFGVTLY  201 (283)
T ss_pred             --------------------CCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCCCcccccHHHHHHHH
Confidence                                23468999999876532211      1233456799999998888899999999999999


Q ss_pred             eeccccccccccC
Q psy2006         306 ELYLGITLMARKT  318 (351)
Q Consensus       306 ~l~tG~~pf~~~~  318 (351)
                      +++||..||....
T Consensus       202 el~tg~~p~~~~~  214 (283)
T cd05080         202 ELLTHCDSKQSPP  214 (283)
T ss_pred             HHHhCCCCCCCCc
Confidence            9999999986543

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.96  E-value=9.2e-29  Score=228.46  Aligned_cols=197  Identities=20%  Similarity=0.278  Sum_probs=161.2

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||+|+||.||+|.+.     .++..||+|.++..  ....+.+.+|+++++++ +|+|      |+++++.+...+..
T Consensus        41 ~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~------iv~~~~~~~~~~~~  114 (302)
T cd05055          41 KTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHEN------IVNLLGACTIGGPI  114 (302)
T ss_pred             ceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCC------cceEEEEEecCCce
Confidence            57999999999999863     24568999998753  23345678899999999 6777      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++||||+ +++|.+++++.....+++.++..++.|++.+                       +.|+|+++++|+|+++.|
T Consensus       115 ~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~-----------------------l~~lH~~~ivH~dlkp~N  171 (302)
T cd05055         115 LVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKG-----------------------MAFLASKNCIHRDLAARN  171 (302)
T ss_pred             EEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeehhhhccce
Confidence            9999999 8999999987654447888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.+                                                                           
T Consensus       172 il~~~---------------------------------------------------------------------------  176 (302)
T cd05055         172 VLLTH---------------------------------------------------------------------------  176 (302)
T ss_pred             EEEcC---------------------------------------------------------------------------
Confidence            98862                                                                           


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                          ...++++|||++......     .....+++.|+|||.+.+..++.++|+||+||++|++
T Consensus       177 --------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DiwslGvil~el  236 (302)
T cd05055         177 --------------------GKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGILLWEI  236 (302)
T ss_pred             --------------------CCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCcHhHHHHHHHHHHHH
Confidence                                245789999987643221     1123456789999999888899999999999999999


Q ss_pred             cc-ccccccccCCCce
Q psy2006         308 YL-GITLMARKTKTKY  322 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~  322 (351)
                      ++ |..||.+.+..+.
T Consensus       237 ~t~g~~p~~~~~~~~~  252 (302)
T cd05055         237 FSLGSNPYPGMPVDSK  252 (302)
T ss_pred             HhCCCCCcCCCCchHH
Confidence            98 9999987665443

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>KOG4645|consensus

Probab=99.96  E-value=8.9e-30  Score=257.53  Aligned_cols=196  Identities=23%  Similarity=0.264  Sum_probs=164.4

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecchhhh---hHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNVEKY---REAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~---~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +||.|.||.||.|++..+|+..|+|-++.....   .+.+.+|..++..+.|+|      +|+++++=...+.++|.|||
T Consensus      1242 ~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpN------lV~YyGVEvHRekv~IFMEy 1315 (1509)
T KOG4645|consen 1242 FIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPN------LVRYYGVEVHREKVYIFMEY 1315 (1509)
T ss_pred             ccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCcc------ccccCceeecHHHHHHHHHH
Confidence            699999999999999999999999999764332   345688999999999988      99999988888899999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      | +|+|.+++...+  -.+|...+.+..|++.|                       +.|||++||+|||+|+.||.|.+ 
T Consensus      1316 C~~GsLa~ll~~gr--i~dE~vt~vyt~qll~g-----------------------la~LH~~gIVHRDIK~aNI~Ld~- 1369 (1509)
T KOG4645|consen 1316 CEGGSLASLLEHGR--IEDEMVTRVYTKQLLEG-----------------------LAYLHEHGIVHRDIKPANILLDF- 1369 (1509)
T ss_pred             hccCcHHHHHHhcc--hhhhhHHHHHHHHHHHH-----------------------HHHHHhcCceecCCCccceeeec-
Confidence            9 999999988764  35666666666666666                       99999999999999999998873 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus      1370 -------------------------------------------------------------------------------- 1369 (1509)
T KOG4645|consen 1370 -------------------------------------------------------------------------------- 1369 (1509)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec-------cccccccccceeeCceeeecC---CCCCccceeeeeeeeEeec
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD-------EHHSTIVSTRHYRAPEVILEL---GWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-------~~~~~~~gt~~y~aPE~~~~~---~~~~~~DiwslG~~l~~l~  308 (351)
                                    .+.+|++|||.+....       .......|||.|||||++.+.   +...++|||||||++.||+
T Consensus      1370 --------------~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~ 1435 (1509)
T KOG4645|consen 1370 --------------NGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMA 1435 (1509)
T ss_pred             --------------CCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEee
Confidence                          3468999999886522       233467899999999999864   4678899999999999999


Q ss_pred             cccccccccCC-Cceee
Q psy2006         309 LGITLMARKTK-TKYFY  324 (351)
Q Consensus       309 tG~~pf~~~~~-~~~~~  324 (351)
                      ||+.||+..+. ..+++
T Consensus      1436 tGkrPW~~~dne~aIMy 1452 (1509)
T KOG4645|consen 1436 TGKRPWAELDNEWAIMY 1452 (1509)
T ss_pred             cCCCchhhccchhHHHh
Confidence            99999988664 44444

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.96  E-value=1.2e-28  Score=221.63  Aligned_cols=193  Identities=20%  Similarity=0.236  Sum_probs=161.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      +.||.|+||.||+|.  .+++.||+|++... ...+.+.+|+.+++.++|++      |+++++++..+ ..++||||+ 
T Consensus        12 ~~lg~g~~g~v~~~~--~~~~~~~iK~~~~~-~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~-~~~~v~e~~~   81 (254)
T cd05083          12 EIIGEGEFGAVLQGE--YTGQKVAVKNIKCD-VTAQAFLEETAVMTKLHHKN------LVRLLGVILHN-GLYIVMELMS   81 (254)
T ss_pred             eeeccCCCCceEecc--cCCCceEEEeecCc-chHHHHHHHHHHHHhCCCCC------cCeEEEEEcCC-CcEEEEECCC
Confidence            579999999999997  68899999999753 23457788999999999877      99999998654 579999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.......+++..+..++.|++.+                       +.|+|+.|++|||+++.|+.+.+   
T Consensus        82 ~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~~~H~dl~p~nili~~---  135 (254)
T cd05083          82 KGNLVNFLRTRGRALVSVIQLLQFSLDVAEG-----------------------MEYLESKKLVHRDLAARNILVSE---  135 (254)
T ss_pred             CCCHHHHHHhcCcCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccccCcceEEEcC---
Confidence            8899999987755567888888888888888                       99999999999999999998862   


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (254)
T cd05083         136 --------------------------------------------------------------------------------  135 (254)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccCC
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKTK  319 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~~  319 (351)
                                  ...++|+|||.+............+..|+|||.+.+..++.++|+|||||++|++++ |..||...+.
T Consensus       136 ------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~~  203 (254)
T cd05083         136 ------------DGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLWEVFSYGRAPYPKMSL  203 (254)
T ss_pred             ------------CCcEEECCCccceeccccCCCCCCCceecCHHHhccCCcCchhhHHHHHHHHHHHHhCCCCCCccCCH
Confidence                        346899999988654333333344568999999988888999999999999999997 9999987765


Q ss_pred             Cce
Q psy2006         320 TKY  322 (351)
Q Consensus       320 ~~~  322 (351)
                      .+.
T Consensus       204 ~~~  206 (254)
T cd05083         204 KEV  206 (254)
T ss_pred             HHH
Confidence            443

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.96  E-value=8.9e-29  Score=224.86  Aligned_cols=200  Identities=15%  Similarity=0.212  Sum_probs=161.9

Q ss_pred             CccccCcccceEEEEEEee-----cCcEEEEEEecchhh--hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           1 MCSLNCVASNHVCTNVVYE-----VDSVVALKIIKNVEK--YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~~~--~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +++||.|+||+||+|+.+.     ..+.||+|.+.....  ..+.+.+|++++++++|+|      |+++++++......
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~   83 (275)
T cd05046          10 ITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKN------VVRLLGLCREAEPH   83 (275)
T ss_pred             eeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcc------eeeeEEEECCCCcc
Confidence            3679999999999999753     457899999975332  3467889999999999877      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCC-------CCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccc
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYL-------PYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREV  145 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~-------~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h  145 (351)
                      |+||||+ +++|.+++......       .+++..+..++.|++.+                       |.|||+.+++|
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~-----------------------l~~LH~~~i~H  140 (275)
T cd05046          84 YMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALG-----------------------MDHLSNARFVH  140 (275)
T ss_pred             eEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHH-----------------------HHHhhhcCccc
Confidence            9999999 89999999876421       46777777777777777                       99999999999


Q ss_pred             cccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         146 RRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       146 ~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +|+|+.|+.+.+                                                                    
T Consensus       141 ~dlkp~Nili~~--------------------------------------------------------------------  152 (275)
T cd05046         141 RDLAARNCLVSS--------------------------------------------------------------------  152 (275)
T ss_pred             CcCccceEEEeC--------------------------------------------------------------------
Confidence            999999998862                                                                    


Q ss_pred             chhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeee
Q psy2006         226 SSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIG  301 (351)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG  301 (351)
                                                 ...++++|||.+.....    ......+++.|++||.+.+...+.++|+||+|
T Consensus       153 ---------------------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG  205 (275)
T cd05046         153 ---------------------------QREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQEDDFSTKSDVWSFG  205 (275)
T ss_pred             ---------------------------CCcEEEcccccccccCcccccccCCceeEEeecChhhhccCCCCchhhHHHHH
Confidence                                       34578888887653211    12234556789999999888889999999999


Q ss_pred             eeeEeecc-ccccccccCCCceee
Q psy2006         302 CIIFELYL-GITLMARKTKTKYFY  324 (351)
Q Consensus       302 ~~l~~l~t-G~~pf~~~~~~~~~~  324 (351)
                      ++++++++ |..||...+..+++.
T Consensus       206 ~~l~~l~~~~~~p~~~~~~~~~~~  229 (275)
T cd05046         206 VLMWEVFTQGELPFYGLSDEEVLN  229 (275)
T ss_pred             HHHHHHHhCCCCCccccchHHHHH
Confidence            99999998 889998766655543

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.5e-28  Score=222.67  Aligned_cols=198  Identities=14%  Similarity=0.130  Sum_probs=158.0

Q ss_pred             ccccCcccceEEEEEEeec---CcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC----
Q psy2006           2 CSLNCVASNHVCTNVVYEV---DSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG----   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~---~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~----   71 (351)
                      +.||+|+||.||+|.+..+   ++.||+|.+...   ....+.+.+|+.+++.+.|+|      |+++++.+....    
T Consensus         5 ~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~~   78 (273)
T cd05035           5 KILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPN------VMKLIGVCFEASSLQK   78 (273)
T ss_pred             cccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCC------eeeEEeeeccCCcccc
Confidence            6799999999999997653   488999999753   233456788999999999888      999999886655    


Q ss_pred             --eEEEEEecc-CCCHHHHHHhcC----CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccc
Q psy2006          72 --HMCIAFEIL-GLSVFDFLKENN----YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKRE  144 (351)
Q Consensus        72 --~~~lV~E~~-g~sL~~~l~~~~----~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~  144 (351)
                        ..++||||+ +++|.+++....    ...+++..+..++.|++.|                       |.|||+++++
T Consensus        79 ~~~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~a-----------------------L~~lH~~~i~  135 (273)
T cd05035          79 IPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALG-----------------------MEYLSNRNFI  135 (273)
T ss_pred             CcccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHH-----------------------HHHHHhCCee
Confidence              389999999 899999986542    1246677777777777777                       9999999999


Q ss_pred             ccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         145 VRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       145 h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      |||+|+.|+.+.+                                                                   
T Consensus       136 H~dlkp~Nil~~~-------------------------------------------------------------------  148 (273)
T cd05035         136 HRDLAARNCMLRE-------------------------------------------------------------------  148 (273)
T ss_pred             ccccchheEEECC-------------------------------------------------------------------
Confidence            9999999998862                                                                   


Q ss_pred             CchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceee
Q psy2006         225 PSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWS  299 (351)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Diws  299 (351)
                                                  ...+||+|||.+......     .....++..|+|||.+.+..++.++|+||
T Consensus       149 ----------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~S  200 (273)
T cd05035         149 ----------------------------DMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWA  200 (273)
T ss_pred             ----------------------------CCeEEECCccceeeccccccccccccccCCccccCHhhcccCCCCcccchHH
Confidence                                        346899999988653211     11223456899999998888899999999


Q ss_pred             eeeeeEeecc-ccccccccCCCcee
Q psy2006         300 IGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       300 lG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      |||++|++++ |..||.+.+..+.+
T Consensus       201 lG~il~el~~~g~~p~~~~~~~~~~  225 (273)
T cd05035         201 FGVTMWEIATRGQTPYPGVENHEIY  225 (273)
T ss_pred             HHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            9999999998 99999877665544

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.95  E-value=4.8e-29  Score=230.86  Aligned_cols=197  Identities=21%  Similarity=0.304  Sum_probs=160.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh---hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK---YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~---~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~~lV   76 (351)
                      +.||.|+||.||+|.+..+++.||+|++.....   ......+|+.+++.++|++      |+++++++...  +.+++|
T Consensus        13 ~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~~~lv   86 (309)
T cd07845          13 NRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPN------IVELKEVVVGKHLDSIFLV   86 (309)
T ss_pred             eeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCC------CcceEEEEecCCCCeEEEE
Confidence            579999999999999999999999999974321   1234567999999999888      99999999765  479999


Q ss_pred             EeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          77 FEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        77 ~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      |||++++|.+++.... ..+++..+..++.|++.+                       |.|||+.|++|+|++++|+.+.
T Consensus        87 ~e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl~p~nil~~  142 (309)
T cd07845          87 MEYCEQDLASLLDNMP-TPFSESQVKCLMLQLLRG-----------------------LQYLHENFIIHRDLKVSNLLLT  142 (309)
T ss_pred             EecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHEEEC
Confidence            9999889999987653 357777777777777777                       9999999999999999999876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                                                                               
T Consensus       143 ~-------------------------------------------------------------------------------  143 (309)
T cd07845         143 D-------------------------------------------------------------------------------  143 (309)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ...++|+|||.+.....   ......+++.|+|||.+.+ ..++.++|+||+||++|++++|.+
T Consensus       144 ----------------~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~~  207 (309)
T cd07845         144 ----------------KGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGCILAELLAHKP  207 (309)
T ss_pred             ----------------CCCEEECccceeeecCCccCCCCcccccccccChhhhcCCCCcCchHHHHHHHHHHHHHHhCCC
Confidence                            34689999998865432   2223345778999999876 457899999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||...+..+.+
T Consensus       208 ~f~~~~~~~~~  218 (309)
T cd07845         208 LLPGKSEIEQL  218 (309)
T ss_pred             CCCCCCHHHHH
Confidence            99877655443

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.95  E-value=9.1e-29  Score=221.97  Aligned_cols=199  Identities=19%  Similarity=0.253  Sum_probs=165.8

Q ss_pred             CccccCcccceEEEEEEeecC----cEEEEEEecchhh--hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVD----SVVALKIIKNVEK--YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~----~~vAiK~~~~~~~--~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      .+.||.|+||.||+|.+...+    ..||+|++.....  ..+.+..|+.+++.+.|++      |+++++.+...+..+
T Consensus         4 ~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~   77 (258)
T smart00219        4 GKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPN------IVKLLGVCTEEEPLM   77 (258)
T ss_pred             cceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCc------hheEEEEEcCCCeeE
Confidence            367999999999999987766    9999999976432  4567889999999998777      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      ++|||+ +++|.+++.......+++..+..++.|++.+                       +.+||+.+++|+|++++|+
T Consensus        78 ~i~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~-----------------------l~~lh~~~~~h~dl~~~ni  134 (258)
T smart00219       78 IVMEYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARG-----------------------MEYLESKNFIHRDLAARNC  134 (258)
T ss_pred             EEEeccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHH-----------------------HHHHhcCCeeecccccceE
Confidence            999999 8899999987653337888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+                                                                            
T Consensus       135 l~~~----------------------------------------------------------------------------  138 (258)
T smart00219      135 LVGE----------------------------------------------------------------------------  138 (258)
T ss_pred             EEcc----------------------------------------------------------------------------
Confidence            8862                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceeccccc----cccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHS----TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~----~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                         ...++|+|||.+........    ...+++.|++||.+.+..++.++|+||+||+++++++
T Consensus       139 -------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~i~~~l~~  199 (258)
T smart00219      139 -------------------NLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSKSDVWSFGVLLWEIFT  199 (258)
T ss_pred             -------------------CCeEEEcccCCceecccccccccccCCCcccccChHHhccCCCCcchhHHHHHHHHHHHHh
Confidence                               34689999998865332211    2236678999999987888999999999999999998


Q ss_pred             -ccccccccCCCcee
Q psy2006         310 -GITLMARKTKTKYF  323 (351)
Q Consensus       310 -G~~pf~~~~~~~~~  323 (351)
                       |.+||...+..+.+
T Consensus       200 ~g~~p~~~~~~~~~~  214 (258)
T smart00219      200 LGESPYPGMSNEEVL  214 (258)
T ss_pred             CCCCCCCCCCHHHHH
Confidence             89999876665544

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.95  E-value=1.6e-28  Score=224.00  Aligned_cols=192  Identities=20%  Similarity=0.279  Sum_probs=154.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHH-HHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINA-LQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~-l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||+|+||.||+|++..+++.||+|.+....  ........|+.+ ++.+.|+|      |+++++++..++..|+|||
T Consensus         7 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           7 EELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPY------TVTFYGALFREGDVWICME   80 (283)
T ss_pred             EEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCC------eeeeeEEEecCCcEEEEhh
Confidence            57999999999999999999999999997532  223345556665 55566666      9999999999999999999


Q ss_pred             ccCCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCeEE
Q psy2006          79 ILGLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDIRL  155 (351)
Q Consensus        79 ~~g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni~l  155 (351)
                      |+.++|.+++...  ....+++..+..++.|++.|                       ++|||++ +++|+|++++|+.+
T Consensus        81 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~~i~h~dlkp~nil~  137 (283)
T cd06617          81 VMDTSLDKFYKKVYDKGLTIPEDILGKIAVSIVKA-----------------------LEYLHSKLSVIHRDVKPSNVLI  137 (283)
T ss_pred             hhcccHHHHHHHhccCCCCCCHHHHHHHHHHHHHH-----------------------HHHHhhcCCeecCCCCHHHEEE
Confidence            9998998888653  22357788888888888887                       9999997 99999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       138 ~-------------------------------------------------------------------------------  138 (283)
T cd06617         138 N-------------------------------------------------------------------------------  138 (283)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            5                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc--cccccccceeeCceeeec----CCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPEVILE----LGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~--~~~~~gt~~y~aPE~~~~----~~~~~~~DiwslG~~l~~l~t  309 (351)
                                      ....+||+|||++......  .....++..|+|||.+.+    ..++.++|+||+||++|++++
T Consensus       139 ----------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~~l~~l~~  202 (283)
T cd06617         139 ----------------RNGQVKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYDVKSDVWSLGITMIELAT  202 (283)
T ss_pred             ----------------CCCCEEEeecccccccccccccccccCCccccChhhcCCcccccccCccccchhhHHHHHHHHh
Confidence                            2346899999988653221  223567889999998864    456889999999999999999


Q ss_pred             cccccccc
Q psy2006         310 GITLMARK  317 (351)
Q Consensus       310 G~~pf~~~  317 (351)
                      |..||...
T Consensus       203 g~~p~~~~  210 (283)
T cd06617         203 GRFPYDSW  210 (283)
T ss_pred             CCCCCCcc
Confidence            99999653

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.95  E-value=5.5e-29  Score=233.09  Aligned_cols=194  Identities=20%  Similarity=0.288  Sum_probs=155.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhh---------------HHHHHHHHHHHHhCCCCCCCCcceeeeeee
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYR---------------EAARLEINALQKIGEKDPNGRHLCVKMLDW   66 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~---------------~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~   66 (351)
                      +.||.|+||+||+|.+..+++.||+|++.......               ..+.+|+.+++.+.|+|      |++++++
T Consensus        15 ~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~   88 (335)
T PTZ00024         15 AHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHEN------IMGLVDV   88 (335)
T ss_pred             hcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcc------eeeeeEE
Confidence            45999999999999999999999999996532111               24678999999999887      9999999


Q ss_pred             EeeCCeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccc
Q psy2006          67 FDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVR  146 (351)
Q Consensus        67 f~~~~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~  146 (351)
                      |...++.|+||||+.++|.+++....  .+++..+..++.|++.+                       |+|||+.|++|+
T Consensus        89 ~~~~~~~~lv~e~~~~~l~~~l~~~~--~~~~~~~~~~~~ql~~a-----------------------L~~LH~~~i~H~  143 (335)
T PTZ00024         89 YVEGDFINLVMDIMASDLKKVVDRKI--RLTESQVKCILLQILNG-----------------------LNVLHKWYFMHR  143 (335)
T ss_pred             EecCCcEEEEEeccccCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecc
Confidence            99999999999999889999987654  57788888888888887                       999999999999


Q ss_pred             ccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         147 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      |+++.|+.+.+                                                                     
T Consensus       144 dl~~~nill~~---------------------------------------------------------------------  154 (335)
T PTZ00024        144 DLSPANIFINS---------------------------------------------------------------------  154 (335)
T ss_pred             cccHHHeEECC---------------------------------------------------------------------
Confidence            99999876652                                                                     


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceec-----------------cccccccccceeeCceeeecC
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----------------EHHSTIVSTRHYRAPEVILEL  289 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----------------~~~~~~~gt~~y~aPE~~~~~  289 (351)
                                                ...++|+|||++....                 .......+++.|+|||.+.+.
T Consensus       155 --------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  208 (335)
T PTZ00024        155 --------------------------KGICKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGA  208 (335)
T ss_pred             --------------------------CCCEEECCccceeecccccccccccccccccccccccccccccCCCCChhcccC
Confidence                                      2245666666553321                 111223457889999998764


Q ss_pred             -CCCCccceeeeeeeeEeeccccccccccCCCc
Q psy2006         290 -GWAQPCDVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       290 -~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                       .++.++|+||+||+++++++|.+||.+.+..+
T Consensus       209 ~~~~~~~Dv~slG~~l~el~tg~~p~~~~~~~~  241 (335)
T PTZ00024        209 EKYHFAVDMWSVGCIFAELLTGKPLFPGENEID  241 (335)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence             46889999999999999999999998776544

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.95  E-value=7.6e-29  Score=224.71  Aligned_cols=197  Identities=11%  Similarity=0.111  Sum_probs=152.7

Q ss_pred             ccccCcccceEEEEEEee--cCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYE--VDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~--~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|....  ....+|+|.+....  .....+.+|+.+++.++|+|      |+++++.+...+..|+||
T Consensus         1 ~~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~n------ii~~~~~~~~~~~~~lv~   74 (269)
T cd05042           1 DEIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPN------VLQCLGQCIESIPYLLVL   74 (269)
T ss_pred             CcCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCC------cceEEEEECCCCceEEEE
Confidence            479999999999997533  34578888876432  22345678999999998887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCC---CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          78 EIL-GLSVFDFLKENNY---LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~---~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      ||+ +++|.+++.....   ...++..+..++.|++.|                       ++|||+++++|||+|+.|+
T Consensus        75 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~dlkp~Ni  131 (269)
T cd05042          75 EFCPLGDLKNYLRSNRGMVAQMAQKDVLQRMACEVASG-----------------------LLWLHQADFIHSDLALRNC  131 (269)
T ss_pred             EeCCCCcHHHHHHhccccccccccHHHHHHHHHHHHHH-----------------------HHHHHhcCEecccccHhhe
Confidence            999 8999999987542   123455666666666666                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       132 ll~-----------------------------------------------------------------------------  134 (269)
T cd05042         132 QLT-----------------------------------------------------------------------------  134 (269)
T ss_pred             Eec-----------------------------------------------------------------------------
Confidence            876                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeec-------CCCCCccceeeee
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILE-------LGWAQPCDVWSIG  301 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~-------~~~~~~~DiwslG  301 (351)
                                        ....+||+|||++.....     ......+++.|+|||++..       ..++.++|+||+|
T Consensus       135 ------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG  196 (269)
T cd05042         135 ------------------ADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKSNIWSLG  196 (269)
T ss_pred             ------------------CCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhccccccccccchhhHHHHHH
Confidence                              234689999998754211     1123345677999998743       3568899999999


Q ss_pred             eeeEeecc-ccccccccCCCce
Q psy2006         302 CIIFELYL-GITLMARKTKTKY  322 (351)
Q Consensus       302 ~~l~~l~t-G~~pf~~~~~~~~  322 (351)
                      |++|++++ |..||...+..+.
T Consensus       197 ~~l~el~~~~~~p~~~~~~~~~  218 (269)
T cd05042         197 VTMWELFTAADQPYPDLSDEQV  218 (269)
T ss_pred             HHHHHHHhCCCCCCCcCCHHHH
Confidence            99999998 8889987765543

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.95  E-value=1.8e-28  Score=221.39  Aligned_cols=198  Identities=20%  Similarity=0.294  Sum_probs=165.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||.|+||+||+|.+..++..+|+|++....  ...+.+.+|+.+++.++|++      |+++++.+...+..++|||+
T Consensus         7 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           7 EVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPN------VVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             eeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCC------EEEEEEEEeeCCEEEEEEec
Confidence            67999999999999988899999999996532  34467789999999998877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCC-CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          80 L-GLSVFDFLKENNY-LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      + +++|.+++..... ..+++..+..++.|++.+                       +.+||+.|++|+|+++.|+.+.+
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~a-----------------------l~~lh~~~i~h~~l~p~ni~~~~  137 (267)
T cd06610          81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKG-----------------------LEYLHSNGQIHRDIKAGNILLGE  137 (267)
T ss_pred             cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHhEEEcC
Confidence            9 8999999987532 357788888888888887                       99999999999999999998762


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (267)
T cd06610         138 --------------------------------------------------------------------------------  137 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeecC-CCCCccceeeeeeeeEeecc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~t  309 (351)
                                     ...++|+|||++.....       ......|+..|++||.+... .++.++|+||+||+++++++
T Consensus       138 ---------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~~Dv~slG~i~~~l~~  202 (267)
T cd06610         138 ---------------DGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIWSFGITAIELAT  202 (267)
T ss_pred             ---------------CCCEEEcccchHHHhccCccccccccccccCChhhcChHHHccccCcCcccchHhHhHHHHHHHh
Confidence                           34689999998754221       11334678899999998776 77999999999999999999


Q ss_pred             ccccccccCCCcee
Q psy2006         310 GITLMARKTKTKYF  323 (351)
Q Consensus       310 G~~pf~~~~~~~~~  323 (351)
                      |..||...+..+.+
T Consensus       203 g~~p~~~~~~~~~~  216 (267)
T cd06610         203 GAAPYSKYPPMKVL  216 (267)
T ss_pred             CCCCccccChhhhH
Confidence            99999887665544

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.95  E-value=1.2e-28  Score=227.07  Aligned_cols=198  Identities=17%  Similarity=0.217  Sum_probs=154.9

Q ss_pred             ccccCcccceEEEEEEeecCc--EEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS--VVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~--~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||.|+||.||+|.+..++.  .+|+|.++..  ....+.+.+|+.++.++ .|+|      |+++++++...+..|+|
T Consensus         8 ~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~------iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           8 DVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPN------IINLLGACENRGYLYIA   81 (297)
T ss_pred             eeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCc------hhheEEEEccCCcceEE
Confidence            579999999999999876654  5788888742  23345678899999999 5666      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc
Q psy2006          77 FEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK  141 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  141 (351)
                      |||+ +++|.+++.....              ..+++..+..++.|++.|                       |+|||++
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~a-----------------------l~~lH~~  138 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATG-----------------------MQYLSEK  138 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHH-----------------------HHHHHHC
Confidence            9999 8899999976532              124455555555555555                       9999999


Q ss_pred             cccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         142 KREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       142 ~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                      |++|||+|+.|+.+.+                                                                
T Consensus       139 ~ivH~dlkp~Nill~~----------------------------------------------------------------  154 (297)
T cd05089         139 QFIHRDLAARNVLVGE----------------------------------------------------------------  154 (297)
T ss_pred             CcccCcCCcceEEECC----------------------------------------------------------------
Confidence            9999999999998862                                                                


Q ss_pred             CCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecccc--ccccccceeeCceeeecCCCCCccceee
Q psy2006         222 DKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWS  299 (351)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~Diws  299 (351)
                                                     ...+||+|||++.......  .....+..|+|||.+.+..++.++|+||
T Consensus       155 -------------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwS  203 (297)
T cd05089         155 -------------------------------NLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIESLNYSVYTTKSDVWS  203 (297)
T ss_pred             -------------------------------CCeEEECCcCCCccccceeccCCCCcCccccCchhhccCCCCchhhHHH
Confidence                                           2458999999875422211  1122345699999998888999999999


Q ss_pred             eeeeeEeecc-ccccccccCCCcee
Q psy2006         300 IGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       300 lG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      |||++|+|++ |..||.+.+..+.+
T Consensus       204 lG~il~el~t~g~~pf~~~~~~~~~  228 (297)
T cd05089         204 FGVLLWEIVSLGGTPYCGMTCAELY  228 (297)
T ss_pred             HHHHHHHHHcCCCCCCCCCCHHHHH
Confidence            9999999997 99999877655543

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>KOG0664|consensus

Probab=99.95  E-value=6.5e-31  Score=227.22  Aligned_cols=195  Identities=22%  Similarity=0.329  Sum_probs=160.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-----eE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-----HM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-----~~   73 (351)
                      |.||.|+||.||-+.|..+|+.||+|.+....   ...+++.+|+++|..++|.|      |..++|+..-..     .+
T Consensus        59 RPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdN------VLSaLDILQPph~dfFqEi  132 (449)
T KOG0664|consen   59 RPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDN------VLSLLDILQPANPSFFQEL  132 (449)
T ss_pred             CcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhcccc------HHHHHHhcCCCCchHHHHH
Confidence            67999999999999999999999999996532   34577889999999999888      999999887554     78


Q ss_pred             EEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          74 CIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        74 ~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |.|.|.+..+|.+.+-.-.  .++-+-+|.+..||+.|                       |.|||+.+|.|||+||+|+
T Consensus       133 YV~TELmQSDLHKIIVSPQ--~Ls~DHvKVFlYQILRG-----------------------LKYLHsA~ILHRDIKPGNL  187 (449)
T KOG0664|consen  133 YVLTELMQSDLHKIIVSPQ--ALTPDHVKVFVYQILRG-----------------------LKYLHTANILHRDIKPGNL  187 (449)
T ss_pred             HHHHHHHHhhhhheeccCC--CCCcchhhhhHHHHHhh-----------------------hHHHhhcchhhccCCCccE
Confidence            8999999999998876644  45555555555555555                       9999999999999999998


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       188 LVN-----------------------------------------------------------------------------  190 (449)
T KOG0664|consen  188 LVN-----------------------------------------------------------------------------  190 (449)
T ss_pred             Eec-----------------------------------------------------------------------------
Confidence            765                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecC-CCCCccceeeeeeeeEeec
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~  308 (351)
                                        +++.+||+|||+++.....    ++.-+-|..|+|||+++|. .|+.+.||||+||++.|++
T Consensus       191 ------------------SNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGaRhYs~AvDiWSVGCIFaELL  252 (449)
T KOG0664|consen  191 ------------------SNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGARRYTGAVDIWSVGCIFAELL  252 (449)
T ss_pred             ------------------cCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcchhhcCccceehhhHHHHHHH
Confidence                              4688999999999874332    2233457899999999985 5799999999999999999


Q ss_pred             cccccccccCCCce
Q psy2006         309 LGITLMARKTKTKY  322 (351)
Q Consensus       309 tG~~pf~~~~~~~~  322 (351)
                      -.+.+|...+.-+.
T Consensus       253 gRrILFQAq~PiqQ  266 (449)
T KOG0664|consen  253 QRKILFQAAGPIEQ  266 (449)
T ss_pred             hhhhhhhccChHHH
Confidence            99999988776554

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.95  E-value=9.8e-29  Score=225.13  Aligned_cols=195  Identities=22%  Similarity=0.376  Sum_probs=159.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeC--CeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYH--GHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~--~~~~l   75 (351)
                      +++||+|+||.||+|.+..+++.||+|+++...  .......+|+.+++++. |+|      |+++++++..+  +.+++
T Consensus         4 ~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~------i~~~~~~~~~~~~~~~~l   77 (282)
T cd07831           4 LGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPN------ILRLIEVLFDRKTGRLAL   77 (282)
T ss_pred             EeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCC------ccceEEEEecCCCCcEEE
Confidence            367999999999999999999999999997532  12223457899998885 666      99999999988  89999


Q ss_pred             EEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          76 AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||||++++|.+.+.... ..+++..+..++.|++.|                       |.|||+.+++|+|+++.|+.+
T Consensus        78 v~e~~~~~l~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------L~~LH~~~i~H~dl~p~ni~l  133 (282)
T cd07831          78 VFELMDMNLYELIKGRK-RPLPEKRVKSYMYQLLKS-----------------------LDHMHRNGIFHRDIKPENILI  133 (282)
T ss_pred             EEecCCccHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceecccCHHHEEE
Confidence            99999889999987654 357788888888888877                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       134 ~~------------------------------------------------------------------------------  135 (282)
T cd07831         134 KD------------------------------------------------------------------------------  135 (282)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            62                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                        ..++|+|||.+.....  ......+++.|+|||.+.+ ..++.++|+||+||+++++++|.+
T Consensus       136 ------------------~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slGv~l~el~~~~~  197 (282)
T cd07831         136 ------------------DILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFP  197 (282)
T ss_pred             ------------------CCeEEEecccccccccCCCcCCCCCCcccCChhHhhcCCCCCcchhHHHHHHHHHHHHcCCc
Confidence                              4689999998865322  2234567889999998755 445889999999999999999999


Q ss_pred             cccccCCCc
Q psy2006         313 LMARKTKTK  321 (351)
Q Consensus       313 pf~~~~~~~  321 (351)
                      ||.+.+..+
T Consensus       198 p~~~~~~~~  206 (282)
T cd07831         198 LFPGTNELD  206 (282)
T ss_pred             CCCCCCHHH
Confidence            998766543

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.95  E-value=1.7e-28  Score=222.00  Aligned_cols=197  Identities=18%  Similarity=0.205  Sum_probs=161.6

Q ss_pred             ccccCcccceEEEEEEeec---CcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEV---DSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~---~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||.|+||+||+|.+...   ...||+|++....  .....+.+|+.+++.++|+|      |+++++.+...+..|+|
T Consensus        10 ~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~iv   83 (266)
T cd05033          10 KVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPN------IIRLEGVVTKSRPVMII   83 (266)
T ss_pred             eEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCC------cceEeEEEecCCceEEE
Confidence            5799999999999998644   4689999987532  23456788999999999877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.... ..+++..+..++.|++.+                       +.|||+.+++|+|+++.|+.+
T Consensus        84 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~-----------------------l~~Lh~~~i~H~di~p~nili  139 (266)
T cd05033          84 TEYMENGSLDKFLREND-GKFTVGQLVGMLRGIASG-----------------------MKYLSEMNYVHRDLAARNILV  139 (266)
T ss_pred             EEcCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCcceEEE
Confidence            9999 889999997754 257788888888888887                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       140 ~~------------------------------------------------------------------------------  141 (266)
T cd05033         140 NS------------------------------------------------------------------------------  141 (266)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            62                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecccc-----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-  309 (351)
                                       ...++|+|||++.......     ....+++.|+|||.+.+..++.++|+|||||+++++++ 
T Consensus       142 -----------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Dv~slG~~l~~l~~~  204 (266)
T cd05033         142 -----------------NLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMSY  204 (266)
T ss_pred             -----------------CCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccccchHHHHHHHHHHHcc
Confidence                             3468999999886542111     12234568999999988889999999999999999987 


Q ss_pred             ccccccccCCCcee
Q psy2006         310 GITLMARKTKTKYF  323 (351)
Q Consensus       310 G~~pf~~~~~~~~~  323 (351)
                      |..||...+..+..
T Consensus       205 g~~p~~~~~~~~~~  218 (266)
T cd05033         205 GERPYWDMSNQDVI  218 (266)
T ss_pred             CCCCCCCCCHHHHH
Confidence            99999776655443

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.95  E-value=2.2e-28  Score=224.37  Aligned_cols=195  Identities=23%  Similarity=0.297  Sum_probs=158.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeC-----CeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYH-----GHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~-----~~~~l   75 (351)
                      +.||.|+||.||+|.+..+++.+|+|++.........+.+|+.+++++ .|+|      |++++++|...     ++.|+
T Consensus        28 ~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~e~~~l~~l~~h~n------i~~~~~~~~~~~~~~~~~~~l  101 (291)
T cd06639          28 ETIGKGTYGKVYKVTNKKDGSLAAVKILDPISDVDEEIEAEYNILQSLPNHPN------VVKFYGMFYKADKLVGGQLWL  101 (291)
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEecccccHHHHHHHHHHHHHHhcCCCC------eEEEEEEEEeccccCCCeeEE
Confidence            579999999999999999999999999976444456677899999998 5666      99999998754     36999


Q ss_pred             EEecc-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          76 AFEIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ||||+ +++|.++++..  ....+++..++.++.|++.+                       |+|||+.+++|+|++++|
T Consensus       102 v~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~ivH~dlkp~n  158 (291)
T cd06639         102 VLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLG-----------------------LQHLHNNRIIHRDVKGNN  158 (291)
T ss_pred             EEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccCCCHHH
Confidence            99999 88999988753  22356777777777777777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.+                                                                           
T Consensus       159 ili~~---------------------------------------------------------------------------  163 (291)
T cd06639         159 ILLTT---------------------------------------------------------------------------  163 (291)
T ss_pred             EEEcC---------------------------------------------------------------------------
Confidence            98762                                                                           


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecC-----CCCCccceeeeeeee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILEL-----GWAQPCDVWSIGCII  304 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~-----~~~~~~DiwslG~~l  304 (351)
                                          ...++|+|||.+.....   ......|+..|+|||.+...     .++.++|+||+||++
T Consensus       164 --------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slGvi~  223 (291)
T cd06639         164 --------------------EGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIACEQQYDYSYDARCDVWSLGITA  223 (291)
T ss_pred             --------------------CCCEEEeecccchhcccccccccCccCCccccChhhhcCCCCcccccCCccchHHHHHHH
Confidence                                34589999998765321   22345678899999987543     257899999999999


Q ss_pred             EeeccccccccccCCC
Q psy2006         305 FELYLGITLMARKTKT  320 (351)
Q Consensus       305 ~~l~tG~~pf~~~~~~  320 (351)
                      |++++|.+||...+..
T Consensus       224 ~el~~g~~p~~~~~~~  239 (291)
T cd06639         224 IELGDGDPPLFDMHPV  239 (291)
T ss_pred             HHHhhCCCCCCCCcHH
Confidence            9999999999876543

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.95  E-value=1.8e-28  Score=223.33  Aligned_cols=194  Identities=25%  Similarity=0.350  Sum_probs=162.0

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||.|+||.||+|.+..+++.||+|++....  .....+.+|+.+++.+.|++      |+++++.|..+++.|+|||
T Consensus         9 ~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e   82 (277)
T cd06641           9 LEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY------VTKYYGSYLKDTKLWIIME   82 (277)
T ss_pred             heeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCC------EeEEEEEEEeCCeEEEEEE
Confidence            467999999999999998899999999986432  33456778999999999877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++...   .+++..+..++.|++.+                       +.+||++|++|+|+++.|+.+. 
T Consensus        83 ~~~~~~l~~~i~~~---~~~~~~~~~~~~~l~~~-----------------------l~~lh~~~i~h~dl~p~Ni~i~-  135 (277)
T cd06641          83 YLGGGSALDLLEPG---PLDETQIATILREILKG-----------------------LDYLHSEKKIHRDIKAANVLLS-  135 (277)
T ss_pred             eCCCCcHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHccCCeecCCCCHHhEEEC-
Confidence            99 88999988653   46777777777777777                       9999999999999999998876 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (277)
T cd06641         136 --------------------------------------------------------------------------------  135 (277)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ..+.++++|||++.....   ......++..|+|||.+.+..++.++|+||+||+++++++|..||
T Consensus       136 --------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~  201 (277)
T cd06641         136 --------------EHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELAKGEPPH  201 (277)
T ss_pred             --------------CCCCEEEeecccceecccchhhhccccCCccccChhhhccCCCCchhhHHHHHHHHHHHHcCCCCC
Confidence                          134588999998754221   123356788999999998888899999999999999999999999


Q ss_pred             cccCCCc
Q psy2006         315 ARKTKTK  321 (351)
Q Consensus       315 ~~~~~~~  321 (351)
                      ...+...
T Consensus       202 ~~~~~~~  208 (277)
T cd06641         202 SELHPMK  208 (277)
T ss_pred             CccchHH
Confidence            8665443

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.95  E-value=3.6e-28  Score=224.88  Aligned_cols=193  Identities=21%  Similarity=0.254  Sum_probs=161.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||.|+||+||+|.+..+++.||+|++...    ....+.+.+|+.+++.++|+|      |+++.+.+...+..++|
T Consensus        20 ~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~n------iv~~~~~~~~~~~~~lv   93 (307)
T cd06607          20 LREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPN------TIEYKGCYLREHTAWLV   93 (307)
T ss_pred             heeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCC------EEEEEEEEEeCCeEEEE
Confidence            35799999999999999889999999998632    223356788999999999888      99999999999999999


Q ss_pred             EeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          77 FEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        77 ~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      |||+.+++.+++.... ..+++..+..++.|++.+                       |.|||+.+++|+|+++.|+.+.
T Consensus        94 ~e~~~g~l~~~~~~~~-~~l~~~~~~~~~~ql~~~-----------------------L~~LH~~~i~H~dl~p~nIl~~  149 (307)
T cd06607          94 MEYCLGSASDILEVHK-KPLQEVEIAAICHGALQG-----------------------LAYLHSHERIHRDIKAGNILLT  149 (307)
T ss_pred             HHhhCCCHHHHHHHcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceecCCCcccEEEC
Confidence            9999889988876543 257777788888888777                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                                                                               
T Consensus       150 ~-------------------------------------------------------------------------------  150 (307)
T cd06607         150 E-------------------------------------------------------------------------------  150 (307)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeee---cCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVIL---ELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                      ...++|+|||++..... .....+++.|+|||.+.   ...++.++|+||+|+++|++++|..|
T Consensus       151 ----------------~~~~kL~dfg~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~s~G~il~el~tg~~p  213 (307)
T cd06607         151 ----------------PGTVKLADFGSASLVSP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPP  213 (307)
T ss_pred             ----------------CCCEEEeecCcceecCC-CCCccCCccccCceeeeccCCCCCCcccchHHHHHHHHHHHcCCCC
Confidence                            34689999998865432 23456788999999885   34578899999999999999999999


Q ss_pred             ccccCC
Q psy2006         314 MARKTK  319 (351)
Q Consensus       314 f~~~~~  319 (351)
                      |...+.
T Consensus       214 ~~~~~~  219 (307)
T cd06607         214 LFNMNA  219 (307)
T ss_pred             CCCccH
Confidence            976554

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.95  E-value=1.1e-28  Score=222.59  Aligned_cols=196  Identities=22%  Similarity=0.256  Sum_probs=159.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||.|+||.||+|.+.. +..+|+|.+.......+.+.+|+++++.+.|++      |+++++++. .+..++||||+ 
T Consensus        12 ~~ig~g~~~~v~~~~~~~-~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~-~~~~~~v~e~~~   83 (260)
T cd05069          12 VKLGQGCFGEVWMGTWNG-TTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDK------LVPLYAVVS-EEPIYIVTEFMG   83 (260)
T ss_pred             eeecCcCCCeEEEEEEcC-CceEEEEEcccCCccHHHHHHHHHHHHhCCCCC------eeeEEEEEc-CCCcEEEEEcCC
Confidence            579999999999998744 456999998765444567788999999999877      999998875 45789999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.......+++..+..++.|++.|                       |.|||+.|++|+|+++.|+.+.|   
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~a-----------------------l~~lH~~~i~H~dl~~~Nill~~---  137 (260)
T cd05069          84 KGSLLDFLKEGDGKYLKLPQLVDMAAQIADG-----------------------MAYIERMNYIHRDLRAANILVGD---  137 (260)
T ss_pred             CCCHHHHHhhCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEeecccCcceEEEcC---
Confidence            7899999987654457788888888888888                       99999999999999999998862   


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (260)
T cd05069         138 --------------------------------------------------------------------------------  137 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                  ...++|+|||.+.......    ....++..|+|||.+.+..++.++|+||||+++|++++ |..||.
T Consensus       138 ------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~  205 (260)
T cd05069         138 ------------NLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELVTKGRVPYP  205 (260)
T ss_pred             ------------CCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCcChHHHHHHHHHHHHHHHhCCCCCCC
Confidence                        3468999999886532211    12345667999999988888999999999999999999 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+..
T Consensus       206 ~~~~~~~~  213 (260)
T cd05069         206 GMVNREVL  213 (260)
T ss_pred             CCCHHHHH
Confidence            87655543

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.95  E-value=6.9e-29  Score=233.42  Aligned_cols=191  Identities=25%  Similarity=0.478  Sum_probs=161.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~   72 (351)
                      +.||.|+||.||+|.+..+++.||+|++...   ....+.+.+|+.+|+.+.|+|      |+++++.|..+.      +
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~   94 (343)
T cd07880          21 KQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHEN------VIGLLDVFTPDLSLDRFHD   94 (343)
T ss_pred             EEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCC------ccceeeeecCCccccccce
Confidence            5799999999999999999999999998642   223456778999999999888      999999998664      4


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      .|+||||++++|.+++...   .+++..++.++.|++.|                       +.|||+.|++|||+++.|
T Consensus        95 ~~lv~e~~~~~l~~~~~~~---~l~~~~~~~i~~qi~~a-----------------------l~~LH~~gi~H~dlkp~N  148 (343)
T cd07880          95 FYLVMPFMGTDLGKLMKHE---KLSEDRIQFLVYQMLKG-----------------------LKYIHAAGIIHRDLKPGN  148 (343)
T ss_pred             EEEEEecCCCCHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHH
Confidence            6999999999999888653   57888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       149 ill~----------------------------------------------------------------------------  152 (343)
T cd07880         149 LAVN----------------------------------------------------------------------------  152 (343)
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            9876                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                         ....++++|||++...........+++.|++||.+.+ ..++.++|+||+||+++++++|.
T Consensus       153 -------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~ll~~l~~g~  213 (343)
T cd07880         153 -------------------EDCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMAEMLTGK  213 (343)
T ss_pred             -------------------CCCCEEEeecccccccccCccccccCCcccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence                               2346899999998765544445677889999999876 35788999999999999999999


Q ss_pred             ccccccCC
Q psy2006         312 TLMARKTK  319 (351)
Q Consensus       312 ~pf~~~~~  319 (351)
                      .||.+.+.
T Consensus       214 ~pf~~~~~  221 (343)
T cd07880         214 PLFKGHDH  221 (343)
T ss_pred             CCCCCCCH
Confidence            99987654

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.95  E-value=2.1e-28  Score=220.87  Aligned_cols=195  Identities=21%  Similarity=0.236  Sum_probs=160.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||.||+|.+ ..+..+|+|.+.......+.+.+|+++++.+.|++      |+++.+.+.. ...++||||+ 
T Consensus        12 ~~lg~g~~~~vy~~~~-~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~-~~~~~v~e~~~   83 (260)
T cd05073          12 KKLGAGQFGEVWMATY-NKHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDK------LVKLHAVVTK-EPIYIITEFMA   83 (260)
T ss_pred             eEecCccceEEEEEEe-cCCccEEEEecCCChhHHHHHHHHHHHHHhcCCCC------cceEEEEEcC-CCeEEEEEeCC
Confidence            6799999999999985 45667999999765444567788999999999877      9999999887 7889999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.......++...+..++.|++.+                       |.|+|+.|++|+|+++.|+.+.    
T Consensus        84 ~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~a-----------------------L~~lH~~~i~H~dl~p~ni~i~----  136 (260)
T cd05073          84 KGSLLDFLKSDEGSKQPLPKLIDFSAQIAEG-----------------------MAFIEQRNYIHRDLRAANILVS----  136 (260)
T ss_pred             CCcHHHHHHhCCccccCHHHHHHHHHHHHHH-----------------------HHHHHhCCccccccCcceEEEc----
Confidence            8899999987655567777888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (260)
T cd05073         137 --------------------------------------------------------------------------------  136 (260)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....++|+|||.+.......    ....++..|+|||.+.+..++.++|+|||||++++++| |..||.
T Consensus       137 -----------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~~l~t~g~~p~~  205 (260)
T cd05073         137 -----------ASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYP  205 (260)
T ss_pred             -----------CCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCCcCccccchHHHHHHHHHHhcCCCCCC
Confidence                       23468999999876432111    12234567999999988888999999999999999998 999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      +.+..+.
T Consensus       206 ~~~~~~~  212 (260)
T cd05073         206 GMSNPEV  212 (260)
T ss_pred             CCCHHHH
Confidence            7665443

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.95  E-value=1.4e-28  Score=224.54  Aligned_cols=198  Identities=18%  Similarity=0.199  Sum_probs=156.7

Q ss_pred             CccccCcccceEEEEEEe-----ecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           1 MCSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      .++||+|+||.||+|...     .++..+|+|.+... ....+.+.+|+++++.++|+|      |+++++++...+..|
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~   83 (280)
T cd05092          10 KWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQH------IVRFYGVCTEGRPLL   83 (280)
T ss_pred             ccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCC------CceEEEEEecCCceE
Confidence            368999999999999743     35678999998753 344567889999999999887      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCC-------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc
Q psy2006          75 IAFEIL-GLSVFDFLKENNY-------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK  140 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~-------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~  140 (351)
                      +||||+ +++|.+++.....             ..+++..+..++.|++.|                       +.|||+
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~a-----------------------l~~LH~  140 (280)
T cd05092          84 MVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASG-----------------------MVYLAS  140 (280)
T ss_pred             EEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHH-----------------------HHHHHH
Confidence            999999 8999999987542             124444555555555555                       999999


Q ss_pred             ccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCC
Q psy2006         141 KKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPF  220 (351)
Q Consensus       141 ~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~  220 (351)
                      .|++|+|+|+.|+.+.+                                                               
T Consensus       141 ~~i~H~dlkp~nil~~~---------------------------------------------------------------  157 (280)
T cd05092         141 LHFVHRDLATRNCLVGQ---------------------------------------------------------------  157 (280)
T ss_pred             CCeecccccHhhEEEcC---------------------------------------------------------------
Confidence            99999999999998862                                                               


Q ss_pred             CCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCcc
Q psy2006         221 FDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPC  295 (351)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~  295 (351)
                                                      ...++|+|||++.....     ......+++.|+|||.+.+..++.++
T Consensus       158 --------------------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  205 (280)
T cd05092         158 --------------------------------GLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTES  205 (280)
T ss_pred             --------------------------------CCCEEECCCCceeEcCCCceeecCCCccccccccCHHHhccCCcCchh
Confidence                                            34689999998754211     11223346789999999888899999


Q ss_pred             ceeeeeeeeEeecc-ccccccccCCCce
Q psy2006         296 DVWSIGCIIFELYL-GITLMARKTKTKY  322 (351)
Q Consensus       296 DiwslG~~l~~l~t-G~~pf~~~~~~~~  322 (351)
                      |+|||||++|++++ |.+||...+..+.
T Consensus       206 Di~slG~il~el~~~g~~p~~~~~~~~~  233 (280)
T cd05092         206 DIWSFGVVLWEIFTYGKQPWYQLSNTEA  233 (280)
T ss_pred             hHHHHHHHHHHHHcCCCCCCccCCHHHH
Confidence            99999999999998 9999977655443

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.95  E-value=2.2e-28  Score=224.65  Aligned_cols=198  Identities=16%  Similarity=0.201  Sum_probs=159.7

Q ss_pred             CccccCcccceEEEEEEeecC----------------cEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceee
Q psy2006           1 MCSLNCVASNHVCTNVVYEVD----------------SVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVK   62 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~----------------~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~   62 (351)
                      +++||+|+||.||+|.+...+                ..||+|.+....  ...+.+.+|+++++.++|+|      |++
T Consensus        10 ~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~   83 (296)
T cd05051          10 VEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPN------IAR   83 (296)
T ss_pred             cccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCC------EeE
Confidence            368999999999999876533                568999997542  34567788999999999877      999


Q ss_pred             eeeeEeeCCeEEEEEecc-CCCHHHHHHhcCC---------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHH
Q psy2006          63 MLDWFDYHGHMCIAFEIL-GLSVFDFLKENNY---------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLI  132 (351)
Q Consensus        63 l~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~---------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~  132 (351)
                      +++++..+++.++|||++ +++|.+++.....         ..+++..+..++.|++.|                     
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a---------------------  142 (296)
T cd05051          84 LLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASG---------------------  142 (296)
T ss_pred             EEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHH---------------------
Confidence            999999999999999999 8999999977541         145666666667766666                     


Q ss_pred             hhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCCh
Q psy2006         133 YAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISL  212 (351)
Q Consensus       133 ~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~  212 (351)
                        |.|||+.+++|+|+|+.|+.+.+                                                       
T Consensus       143 --l~~LH~~~i~H~dlkp~Nili~~-------------------------------------------------------  165 (296)
T cd05051         143 --MRYLESLNFVHRDLATRNCLVGK-------------------------------------------------------  165 (296)
T ss_pred             --HHHHHHcCccccccchhceeecC-------------------------------------------------------
Confidence              99999999999999999998872                                                       


Q ss_pred             hhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeee
Q psy2006         213 SEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVIL  287 (351)
Q Consensus       213 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~  287 (351)
                                                              ...++|+|||.+.....     ......+++.|+|||.+.
T Consensus       166 ----------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  205 (296)
T cd05051         166 ----------------------------------------NYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAWESVL  205 (296)
T ss_pred             ----------------------------------------CCceEEccccceeecccCcceeecCcCCCCceecCHHHhh
Confidence                                                    24688999998764221     122345567899999998


Q ss_pred             cCCCCCccceeeeeeeeEeecc--ccccccccCCCce
Q psy2006         288 ELGWAQPCDVWSIGCIIFELYL--GITLMARKTKTKY  322 (351)
Q Consensus       288 ~~~~~~~~DiwslG~~l~~l~t--G~~pf~~~~~~~~  322 (351)
                      +..++.++|+|||||++|++++  |..||...+..+.
T Consensus       206 ~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~~~~~  242 (296)
T cd05051         206 LGKFTTKSDVWAFGVTLWEILTLCREQPYEHLTDQQV  242 (296)
T ss_pred             cCCCCccchhhhhHHHHHHHHhcCCCCCCCCcChHHH
Confidence            8888999999999999999987  7889987665554

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.95  E-value=2.3e-28  Score=221.31  Aligned_cols=194  Identities=22%  Similarity=0.251  Sum_probs=159.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~   73 (351)
                      +.||+|+||.||+|.+..+++.||+|++....      .....+.+|+.+++.++|+|      |+++++.+...  ..+
T Consensus         8 ~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~   81 (266)
T cd06651           8 KLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHER------IVQYYGCLRDRAEKTL   81 (266)
T ss_pred             ceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCC------eeeEEEEEEcCCCCEE
Confidence            57999999999999998999999999986421      22345778999999999888      99999998763  588


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++++||+ +++|.+++....  .+++..+..++.|++.+                       +.|||+.+++|+|+++.|
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~-----------------------l~~LH~~~i~H~~l~p~n  136 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYG--ALTESVTRKYTRQILEG-----------------------MSYLHSNMIVHRDIKGAN  136 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeeCCCCHHH
Confidence            9999999 889999997754  46777777777877777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       137 il~~----------------------------------------------------------------------------  140 (266)
T cd06651         137 ILRD----------------------------------------------------------------------------  140 (266)
T ss_pred             EEEC----------------------------------------------------------------------------
Confidence            8765                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                         ....++|+|||++.....      ......++..|+|||.+.+..++.++|+||+||++|+
T Consensus       141 -------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~i~~e  201 (266)
T cd06651         141 -------------------SAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVISGEGYGRKADVWSLGCTVVE  201 (266)
T ss_pred             -------------------CCCCEEEccCCCccccccccccCCccccCCccccccCHHHhCCCCCCchhhhHHHHHHHHH
Confidence                               134689999998754211      1123457889999999988888999999999999999


Q ss_pred             eccccccccccCCCc
Q psy2006         307 LYLGITLMARKTKTK  321 (351)
Q Consensus       307 l~tG~~pf~~~~~~~  321 (351)
                      +++|..||...+..+
T Consensus       202 l~~g~~pf~~~~~~~  216 (266)
T cd06651         202 MLTEKPPWAEYEAMA  216 (266)
T ss_pred             HHHCCCCccccchHH
Confidence            999999998665443

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.95  E-value=1.3e-28  Score=221.29  Aligned_cols=195  Identities=17%  Similarity=0.258  Sum_probs=160.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      +.||.|+||.||+|.+. .++.+|+|++.........+.+|+++++.+.|++      |+++++++......|+||||+ 
T Consensus        10 ~~ig~g~~g~v~~~~~~-~~~~~~~k~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~v~e~~~   82 (256)
T cd05112          10 QEIGSGQFGLVWLGYWL-EKRKVAIKTIREGAMSEEDFIEEAQVMMKLSHPK------LVQLYGVCTERSPICLVFEFME   82 (256)
T ss_pred             eeecCcccceEEEEEEe-CCCeEEEEECCCCCCCHHHHHHHHHHHHhCCCCC------eeeEEEEEccCCceEEEEEcCC
Confidence            67999999999999874 5778999999765444567788999999998877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..+++..++.++.|++.+                       +.+||+.+++|+|+++.|+.+.    
T Consensus        83 ~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~-----------------------l~~lH~~~i~h~dl~p~ni~i~----  134 (256)
T cd05112          83 HGCLSDYLRAQR-GKFSQETLLGMCLDVCEG-----------------------MAYLESSNVIHRDLAARNCLVG----  134 (256)
T ss_pred             CCcHHHHHHhCc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccccccceEEEc----
Confidence            889999987654 356777788888888877                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (256)
T cd05112         135 --------------------------------------------------------------------------------  134 (256)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....++|+|||++.......    ....++..|+|||.+.+..++.++|+||+|+++|++++ |..||.
T Consensus       135 -----------~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~  203 (256)
T cd05112         135 -----------ENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYSSKSDVWSFGVLMWEVFSEGKTPYE  203 (256)
T ss_pred             -----------CCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcChHHHHHHHHHHHHHHHcCCCCCCC
Confidence                       13468999999876532211    12234568999999988888999999999999999998 999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      ..+..+.
T Consensus       204 ~~~~~~~  210 (256)
T cd05112         204 NRSNSEV  210 (256)
T ss_pred             cCCHHHH
Confidence            7665443

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.95  E-value=1.3e-28  Score=224.63  Aligned_cols=195  Identities=24%  Similarity=0.360  Sum_probs=163.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||.|++|.||+|.+..+++.||+|++....   ...+.+.+|+.+++.++|++      |+++++++...+..|+||
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~------iv~~~~~~~~~~~~~iv~   77 (283)
T cd07835           4 VEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPN------IVRLLDVVHSENKLYLVF   77 (283)
T ss_pred             heEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCC------ccCHhheeccCCeEEEEE
Confidence            468999999999999998899999999997532   22345778999999999877      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||++++|.+++.......+++..+..++.|++.+                       |+|||+++++|+|+++.|+.+. 
T Consensus        78 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------L~~lH~~~~~H~dl~p~nil~~-  133 (283)
T cd07835          78 EFLDLDLKKYMDSSPLTGLDPPLIKSYLYQLLQG-----------------------IAYCHSHRVLHRDLKPQNLLID-  133 (283)
T ss_pred             eccCcCHHHHHhhCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeCCCCCHHHEEEc-
Confidence            9998899999987654467888888888888888                       9999999999999999999876 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (283)
T cd07835         134 --------------------------------------------------------------------------------  133 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ....++|+|||.+.....   ......+++.|+|||.+.+. .++.++|+||+||++|++++|.+|
T Consensus       134 --------------~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p  199 (283)
T cd07835         134 --------------REGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIGCIFAEMVNRRPL  199 (283)
T ss_pred             --------------CCCcEEEeecccccccCCCccccCccccccCCCCCceeecCcccCcHHHHHHHHHHHHHHHhCCCC
Confidence                          134689999998764322   12234567889999988764 568899999999999999999999


Q ss_pred             ccccCC
Q psy2006         314 MARKTK  319 (351)
Q Consensus       314 f~~~~~  319 (351)
                      |...+.
T Consensus       200 f~~~~~  205 (283)
T cd07835         200 FPGDSE  205 (283)
T ss_pred             CCCCCH
Confidence            977654

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.95  E-value=1.3e-28  Score=227.75  Aligned_cols=198  Identities=19%  Similarity=0.263  Sum_probs=155.8

Q ss_pred             ccccCcccceEEEEEEee-------cCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYE-------VDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-------~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      ++||+|+||.||+|.+..       +...+|+|++...  ......+.+|+.+++.+ +|+|      |+++++++...+
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~------i~~~~~~~~~~~   97 (307)
T cd05098          24 KPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN------IINLLGACTQDG   97 (307)
T ss_pred             eeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCC------EeeEEEEEecCC
Confidence            689999999999998653       2357999999753  22335677899999999 5766      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhh
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD  136 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~  136 (351)
                      ..|+||||+ +++|.+++.....              ..++...+..++.|++.+                       |+
T Consensus        98 ~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~a-----------------------L~  154 (307)
T cd05098          98 PLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARG-----------------------ME  154 (307)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHH-----------------------HH
Confidence            999999999 8899999987532              124555566666666666                       99


Q ss_pred             ccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhh
Q psy2006         137 YNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEAL  216 (351)
Q Consensus       137 ~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l  216 (351)
                      |||+.|++|||+|+.|+.+.+                                                           
T Consensus       155 ~lH~~gi~H~dlkp~Nill~~-----------------------------------------------------------  175 (307)
T cd05098         155 YLASKKCIHRDLAARNVLVTE-----------------------------------------------------------  175 (307)
T ss_pred             HHHHCCcccccccHHheEEcC-----------------------------------------------------------
Confidence            999999999999999998862                                                           


Q ss_pred             cCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCC
Q psy2006         217 RHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGW  291 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~  291 (351)
                                                          ...++|+|||.+......     .....+++.|+|||.+.+..+
T Consensus       176 ------------------------------------~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  219 (307)
T cd05098         176 ------------------------------------DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY  219 (307)
T ss_pred             ------------------------------------CCcEEECCCcccccccccchhhccccCCCccceeChHHhccCCC
Confidence                                                346899999987643211     111233468999999988888


Q ss_pred             CCccceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         292 AQPCDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       292 ~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +.++|+||+||++|+|++ |..||.+.+..+.+
T Consensus       220 ~~~~DvwslG~~l~el~~~g~~p~~~~~~~~~~  252 (307)
T cd05098         220 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF  252 (307)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCCCCcCCHHHHH
Confidence            999999999999999998 89999876655544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=4e-29  Score=246.09  Aligned_cols=192  Identities=20%  Similarity=0.249  Sum_probs=146.5

Q ss_pred             CccccCcccceEEEEEEeec-CcEEEEE------------------EecchhhhhHHHHHHHHHHHHhCCCCCCCCccee
Q psy2006           1 MCSLNCVASNHVCTNVVYEV-DSVVALK------------------IIKNVEKYREAARLEINALQKIGEKDPNGRHLCV   61 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~-~~~vAiK------------------~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv   61 (351)
                      +++||+|+||+||+|..+.. +..++.|                  .+.........+.+|+.+|++++|+|      |+
T Consensus       153 i~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~Hpn------Iv  226 (501)
T PHA03210        153 IDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHEN------IL  226 (501)
T ss_pred             EeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCC------cC
Confidence            36899999999999986542 2222222                  11111223345678999999999888      99


Q ss_pred             eeeeeEeeCCeEEEEEeccCCCHHHHHHhcCC---CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcc
Q psy2006          62 KMLDWFDYHGHMCIAFEILGLSVFDFLKENNY---LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYN  138 (351)
Q Consensus        62 ~l~~~f~~~~~~~lV~E~~g~sL~~~l~~~~~---~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  138 (351)
                      ++++++...+..|+|+|+++++|.+++.....   .......++.++.|++.|                       |+||
T Consensus       227 ~l~~~~~~~~~~~lv~e~~~~~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~a-----------------------L~yL  283 (501)
T PHA03210        227 KIEEILRSEANTYMITQKYDFDLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCA-----------------------VEYI  283 (501)
T ss_pred             cEeEEEEECCeeEEEEeccccCHHHHHhhccccccccccHHHHHHHHHHHHHH-----------------------HHHH
Confidence            99999999999999999999999998865431   112234455555555555                       9999


Q ss_pred             ccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         139 NKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       139 H~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      |++|++|||+|+.||.+.                                                              
T Consensus       284 H~~gIiHrDLKP~NILl~--------------------------------------------------------------  301 (501)
T PHA03210        284 HDKKLIHRDIKLENIFLN--------------------------------------------------------------  301 (501)
T ss_pred             HhCCeecCCCCHHHEEEC--------------------------------------------------------------
Confidence            999999999999999886                                                              


Q ss_pred             CCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecCCCCCc
Q psy2006         219 PFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELGWAQP  294 (351)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~  294 (351)
                                                       ..+.+||+|||++......    .....||+.|+|||++.+..++.+
T Consensus       302 ---------------------------------~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  348 (501)
T PHA03210        302 ---------------------------------CDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEI  348 (501)
T ss_pred             ---------------------------------CCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcH
Confidence                                             2346899999998653221    224679999999999999999999


Q ss_pred             cceeeeeeeeEeeccccccccc
Q psy2006         295 CDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       295 ~DiwslG~~l~~l~tG~~pf~~  316 (351)
                      +|||||||++|+|++|..++.+
T Consensus       349 ~DiwSlGvil~ell~~~~~p~~  370 (501)
T PHA03210        349 TDIWSCGLILLDMLSHDFCPIG  370 (501)
T ss_pred             HHHHHHHHHHHHHHHCCCCCcc
Confidence            9999999999999998865443

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.95  E-value=1.1e-28  Score=226.58  Aligned_cols=195  Identities=22%  Similarity=0.303  Sum_probs=162.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~~lV   76 (351)
                      +.||.|+||.||+|.+..+++.||+|.++...   .....+.+|+.+++.++|+|      |+++++++...  ++.|+|
T Consensus        11 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~n------i~~~~~~~~~~~~~~~~lv   84 (293)
T cd07843          11 NRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPN------IVTVKEVVVGSNLDKIYMV   84 (293)
T ss_pred             hhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCC------EEEEEEEEEecCCCcEEEE
Confidence            57999999999999998899999999997532   22234578999999999877      99999999888  799999


Q ss_pred             EeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          77 FEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        77 ~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      |||++++|.+++.... ..+++..++.++.|++.|                       |+|||+++++|+|++++|+.+.
T Consensus        85 ~e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~a-----------------------L~~LH~~~i~H~dl~p~nili~  140 (293)
T cd07843          85 MEYVEHDLKSLMETMK-QPFLQSEVKCLMLQLLSG-----------------------VAHLHDNWILHRDLKTSNLLLN  140 (293)
T ss_pred             ehhcCcCHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeccCCHHHEEEC
Confidence            9999889999987754 257888888888888888                       9999999999999999999876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (293)
T cd07843         141 --------------------------------------------------------------------------------  140 (293)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecCC-CCCccceeeeeeeeEeeccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                     ....++|+|||.+......   .....+++.|+|||.+.+.. ++.++|+||+||+++++++|.+
T Consensus       141 ---------------~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~  205 (293)
T cd07843         141 ---------------NRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGCIFAELLTKKP  205 (293)
T ss_pred             ---------------CCCcEEEeecCceeeccCCccccccccccccccCchhhcCCccccchhhHHHHHHHHHHHHhCCC
Confidence                           2346899999987653322   23355678899999987654 5889999999999999999999


Q ss_pred             cccccCCCc
Q psy2006         313 LMARKTKTK  321 (351)
Q Consensus       313 pf~~~~~~~  321 (351)
                      ||...+..+
T Consensus       206 ~f~~~~~~~  214 (293)
T cd07843         206 LFPGKSEID  214 (293)
T ss_pred             CCCCCChHH
Confidence            998776543

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2e-28  Score=222.76  Aligned_cols=195  Identities=24%  Similarity=0.305  Sum_probs=162.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhC---CCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIG---EKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~---h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++.||.|+||.||+|.+..+++.||+|.+...  ....+.+.+|+++++.+.   |++      |+++++++....+.|+
T Consensus         6 ~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~------vi~~~~~~~~~~~~~l   79 (277)
T cd06917           6 LELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPN------ITKYYGSYLKGPRLWI   79 (277)
T ss_pred             hhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCC------eeeEeeeeeeCCEEEE
Confidence            36799999999999999899999999998653  233456788999999997   444      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||+ +++|.+++...   .+++..+..++.|++.+                       |.|||+.|++|+|+++.|+.
T Consensus        80 v~e~~~~~~L~~~~~~~---~l~~~~~~~i~~~i~~~-----------------------l~~lh~~~i~H~dl~p~ni~  133 (277)
T cd06917          80 IMEYAEGGSVRTLMKAG---PIAEKYISVIIREVLVA-----------------------LKYIHKVGVIHRDIKAANIL  133 (277)
T ss_pred             EEecCCCCcHHHHHHcc---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCcCHHHEE
Confidence            99999 88999998653   57788888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.+                                                                             
T Consensus       134 i~~-----------------------------------------------------------------------------  136 (277)
T cd06917         134 VTN-----------------------------------------------------------------------------  136 (277)
T ss_pred             EcC-----------------------------------------------------------------------------
Confidence            872                                                                             


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                        ...++|+|||.+.....   ......|+..|+|||.+.. ..++.++|+||+||++|++++|
T Consensus       137 ------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~~ll~g  198 (277)
T cd06917         137 ------------------TGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIWSLGITIYEMATG  198 (277)
T ss_pred             ------------------CCCEEEccCCceeecCCCccccccccCCcceeCHHHhccCCccccchhHHHHHHHHHHHHhC
Confidence                              34689999998865322   2234568889999998864 4568899999999999999999


Q ss_pred             cccccccCCCce
Q psy2006         311 ITLMARKTKTKY  322 (351)
Q Consensus       311 ~~pf~~~~~~~~  322 (351)
                      ..||.+.+..+.
T Consensus       199 ~~p~~~~~~~~~  210 (277)
T cd06917         199 NPPYSDVDAFRA  210 (277)
T ss_pred             CCCCCCCChhhh
Confidence            999987665443

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.95  E-value=2.2e-28  Score=221.99  Aligned_cols=188  Identities=19%  Similarity=0.205  Sum_probs=153.7

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEEEecc-C
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-G   81 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-g   81 (351)
                      ||.|+||.||++.++.+++.+|+|++......    ..|+.+...+ .|+|      |+++++.|..++..|+||||+ +
T Consensus        24 lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~----~~e~~~~~~~~~h~~------iv~~~~~~~~~~~~~iv~e~~~~   93 (267)
T PHA03390         24 LIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFN----AIEPMVHQLMKDNPN------FIKLYYSVTTLKGHVLIMDYIKD   93 (267)
T ss_pred             ecCCCceEEEEEEEcCCCcEEEEEEEehhhcc----hhhHHHHHHhhcCCC------EEEEEEEEecCCeeEEEEEcCCC
Confidence            59999999999999999999999999753211    1133333323 3454      999999999999999999999 8


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCc
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      ++|.+++....  .+++..+..++.|++.|                       +.|||+.|++|+|+++.|+.+.+    
T Consensus        94 ~~L~~~l~~~~--~l~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl~p~nil~~~----  144 (267)
T PHA03390         94 GDLFDLLKKEG--KLSEAEVKKIIRQLVEA-----------------------LNDLHKHNIIHNDIKLENVLYDR----  144 (267)
T ss_pred             CcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeeCCCCHHHEEEeC----
Confidence            99999998764  67888888888888888                       99999999999999999998762    


Q ss_pred             ccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhc
Q psy2006         162 TFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (351)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (267)
T PHA03390        145 --------------------------------------------------------------------------------  144 (267)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCCCc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                                ....++|+|||.+...... ....+++.|+|||.+.+..++.++|+||+|++++++++|..||...+..+
T Consensus       145 ----------~~~~~~l~dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~  213 (267)
T PHA03390        145 ----------AKDRIYLCDYGLCKIIGTP-SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEE  213 (267)
T ss_pred             ----------CCCeEEEecCccceecCCC-ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcch
Confidence                      1126899999988654322 23467889999999998889999999999999999999999998665443

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.95  E-value=1.6e-28  Score=223.88  Aligned_cols=195  Identities=17%  Similarity=0.220  Sum_probs=158.1

Q ss_pred             CccccCcccceEEEEEEeecCc----EEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDS----VVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~----~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +++||.|+||+||+|.+..+++    .||+|++...  ......+.+|+.+++.+.|+|      |+.+++++.. ...+
T Consensus        12 ~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~-~~~~   84 (279)
T cd05109          12 VKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPY------VCRLLGICLT-STVQ   84 (279)
T ss_pred             eeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCC------CceEEEEEcC-CCcE
Confidence            3679999999999999877766    4899998643  233456788999999998877      9999998865 4578


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +++||+ +|+|.+++.... ..+++..+..++.|++.|                       |.|||+++++|||+|++|+
T Consensus        85 l~~~~~~~g~l~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------L~~lH~~~iiH~dlkp~Ni  140 (279)
T cd05109          85 LVTQLMPYGCLLDYVRENK-DRIGSQDLLNWCVQIAKG-----------------------MSYLEEVRLVHRDLAARNV  140 (279)
T ss_pred             EEEEcCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccccccceE
Confidence            999999 899999987653 357888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+                                                                            
T Consensus       141 l~~~----------------------------------------------------------------------------  144 (279)
T cd05109         141 LVKS----------------------------------------------------------------------------  144 (279)
T ss_pred             EEcC----------------------------------------------------------------------------
Confidence            8862                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecccc-----ccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                         ...+||+|||++.......     ....+++.|++||.+.+..++.++|+|||||++|+++
T Consensus       145 -------------------~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~  205 (279)
T cd05109         145 -------------------PNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVTVWELM  205 (279)
T ss_pred             -------------------CCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhHHHHHHHHHHHHH
Confidence                               2358999999886532211     1223456899999998888999999999999999998


Q ss_pred             c-ccccccccCCCc
Q psy2006         309 L-GITLMARKTKTK  321 (351)
Q Consensus       309 t-G~~pf~~~~~~~  321 (351)
                      + |..||......+
T Consensus       206 t~g~~p~~~~~~~~  219 (279)
T cd05109         206 TFGAKPYDGIPARE  219 (279)
T ss_pred             cCCCCCCCCCCHHH
Confidence            8 999997765443

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.95  E-value=1.8e-28  Score=223.78  Aligned_cols=195  Identities=17%  Similarity=0.187  Sum_probs=156.5

Q ss_pred             CccccCcccceEEEEEEeecCc----EEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDS----VVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~----~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++.||.|+||+||+|.+..+++    .+|+|.+....  .....+..|+.+++++.|+|      |+++++++. ....+
T Consensus        12 ~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~------iv~~~~~~~-~~~~~   84 (279)
T cd05111          12 LKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAY------IVRLLGICP-GASLQ   84 (279)
T ss_pred             ccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCC------cceEEEEEC-CCccE
Confidence            3679999999999999877776    47777775321  22345677888889998877      999999875 45678


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +++||+ +++|.+++.... ..+++..+..++.|++.|                       +.|||+++++|+|+|+.|+
T Consensus        85 ~i~e~~~~gsL~~~l~~~~-~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~iiH~dlkp~ni  140 (279)
T cd05111          85 LVTQLSPLGSLLDHVRQHR-DSLDPQRLLNWCVQIAKG-----------------------MYYLEEHRMVHRNLAARNI  140 (279)
T ss_pred             EEEEeCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeccccCcceE
Confidence            899999 899999998754 357888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       141 li~-----------------------------------------------------------------------------  143 (279)
T cd05111         141 LLK-----------------------------------------------------------------------------  143 (279)
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            876                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                        ....+||+|||.+......     .....++..|++||.+.+..++.++|+|||||++|+++
T Consensus       144 ------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~el~  205 (279)
T cd05111         144 ------------------SDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDVWSYGVTVWEMM  205 (279)
T ss_pred             ------------------CCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhHHHHHHHHHHHH
Confidence                              2346899999988653211     12344567899999998888999999999999999999


Q ss_pred             c-ccccccccCCCc
Q psy2006         309 L-GITLMARKTKTK  321 (351)
Q Consensus       309 t-G~~pf~~~~~~~  321 (351)
                      + |..||.+....+
T Consensus       206 t~g~~p~~~~~~~~  219 (279)
T cd05111         206 SYGAEPYAGMRPHE  219 (279)
T ss_pred             cCCCCCCCCCCHHH
Confidence            8 999998765443

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.95  E-value=1.6e-28  Score=222.29  Aligned_cols=197  Identities=16%  Similarity=0.204  Sum_probs=160.2

Q ss_pred             ccccCcccceEEEEEEeecCc---EEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS---VVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~---~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||.||+|++..+++   .+|+|.+...  ....+.+..|+++++.+.|+|      |+++.+++...++.++|
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv   84 (268)
T cd05063          11 KVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHN------IIRLEGVVTKFKPAMII   84 (268)
T ss_pred             eEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCC------eeEEEEEEccCCCcEEE
Confidence            579999999999999876554   7999999753  233456788999999998877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.... ..+++..+..++.|++.|                       ++|||+.|++|+|+++.|+.+
T Consensus        85 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~a-----------------------l~~lH~~~i~H~dlkp~Nili  140 (268)
T cd05063          85 TEYMENGALDKYLRDHD-GEFSSYQLVGMLRGIAAG-----------------------MKYLSDMNYVHRDLAARNILV  140 (268)
T ss_pred             EEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccccchhhEEE
Confidence            9999 889999987653 357788888888888877                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       141 ~~------------------------------------------------------------------------------  142 (268)
T cd05063         141 NS------------------------------------------------------------------------------  142 (268)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            61                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccccc------cccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHS------TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~------~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                       ...++++|||++........      ....++.|+|||.+.+..++.++|+||+||++|++++
T Consensus       143 -----------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~il~ell~  205 (268)
T cd05063         143 -----------------NLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSASDVWSFGIVMWEVMS  205 (268)
T ss_pred             -----------------CCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChHhHHHHHHHHHHHHHh
Confidence                             34688999998764321111      1122457999999988888999999999999999987


Q ss_pred             -ccccccccCCCcee
Q psy2006         310 -GITLMARKTKTKYF  323 (351)
Q Consensus       310 -G~~pf~~~~~~~~~  323 (351)
                       |..||...+..+.+
T Consensus       206 ~g~~p~~~~~~~~~~  220 (268)
T cd05063         206 FGERPYWDMSNHEVM  220 (268)
T ss_pred             CCCCCCCcCCHHHHH
Confidence             99999776655443

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.95  E-value=2.4e-28  Score=221.42  Aligned_cols=196  Identities=18%  Similarity=0.242  Sum_probs=158.7

Q ss_pred             ccccCcccceEEEEEEeecCc---EEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS---VVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~---~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||.|+||.||+|.+..+++   .||+|++...  ....+.+..|+.+++.+.|+|      |+++++++..++..++|
T Consensus        10 ~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~n------i~~~~~~~~~~~~~~lv   83 (269)
T cd05065          10 EVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPN------IIHLEGVVTKSRPVMII   83 (269)
T ss_pred             eEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcC------cceEEEEECCCCceEEE
Confidence            579999999999999877665   6999999753  334567889999999999887      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.... ..+++..+..++.|++.+                       |.|||++|++|+|+++.|+.+
T Consensus        84 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~~l~~a-----------------------l~~lH~~g~~H~dl~p~nili  139 (269)
T cd05065          84 TEFMENGALDSFLRQND-GQFTVIQLVGMLRGIAAG-----------------------MKYLSEMNYVHRDLAARNILV  139 (269)
T ss_pred             EecCCCCcHHHHHhhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeecccChheEEE
Confidence            9999 889999987654 356777778888888777                       999999999999999999887


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       140 ~-------------------------------------------------------------------------------  140 (269)
T cd05065         140 N-------------------------------------------------------------------------------  140 (269)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            5                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecccc-----cccc---ccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-----STIV---STRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-----~~~~---gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                      ....++++|||.+.......     ....   .+..|+|||.+.+..++.++|+||+||++|++
T Consensus       141 ----------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DvwslG~~l~e~  204 (269)
T cd05065         141 ----------------SNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEV  204 (269)
T ss_pred             ----------------CCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCcccchhhhhhhHHHHHHH
Confidence                            13458889998875422111     1111   13479999999888899999999999999998


Q ss_pred             cc-ccccccccCCCce
Q psy2006         308 YL-GITLMARKTKTKY  322 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~  322 (351)
                      ++ |..||...+..+.
T Consensus       205 l~~g~~p~~~~~~~~~  220 (269)
T cd05065         205 MSYGERPYWDMSNQDV  220 (269)
T ss_pred             hcCCCCCCCCCCHHHH
Confidence            86 9999987665543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>KOG0584|consensus

Probab=99.95  E-value=1.6e-29  Score=240.23  Aligned_cols=197  Identities=16%  Similarity=0.207  Sum_probs=170.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecc-----hhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC--eEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKN-----VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--HMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~--~~~   74 (351)
                      +.||+|+|-+||+|.|..+|-.||.-.++.     .....+++..|+.+|+.|+|+|      |++++++|.+..  .+.
T Consensus        46 evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~N------Iirfy~SW~d~~n~~in  119 (632)
T KOG0584|consen   46 EVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPN------IIRFYDSWVDTDNKTIN  119 (632)
T ss_pred             hhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCc------eeeeeeheecCCCceee
Confidence            469999999999999999999998766543     2334478899999999999888      999999998776  589


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc--ccccccCCC
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK--REVRRVRRC  151 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~d~k~~  151 (351)
                      +|+|.+ .|+|+.|.++.+  .+....++.|++||+.|                       |.|||++.  |+|||+|.+
T Consensus       120 ~iTEL~TSGtLr~Y~kk~~--~vn~kaik~W~RQILkG-----------------------L~yLHs~~PPIIHRDLKCD  174 (632)
T KOG0584|consen  120 FITELFTSGTLREYRKKHR--RVNIKAIKSWCRQILKG-----------------------LVYLHSQDPPIIHRDLKCD  174 (632)
T ss_pred             eeeecccCCcHHHHHHHhc--cCCHHHHHHHHHHHHHH-----------------------hhhhhcCCCCccccccccc
Confidence            999999 999999999986  68888999999999999                       99999986  899999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.+.-                                                                          
T Consensus       175 NIFinG--------------------------------------------------------------------------  180 (632)
T KOG0584|consen  175 NIFVNG--------------------------------------------------------------------------  180 (632)
T ss_pred             eEEEcC--------------------------------------------------------------------------
Confidence            998871                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                          ..+.|||+|+|++.... ....+.+|||.|||||... ..|+..+||||||+++.||+|+
T Consensus       181 --------------------~~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYE-E~YnE~VDVYaFGMCmLEMvT~  239 (632)
T KOG0584|consen  181 --------------------NLGEVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYE-ENYNELVDVYAFGMCMLEMVTS  239 (632)
T ss_pred             --------------------CcCceeecchhHHHHhhccccceeccCccccChHHHh-hhcchhhhhhhhhHHHHHHHhc
Confidence                                35789999999998743 3444579999999999984 8899999999999999999999


Q ss_pred             cccccccCCCceee
Q psy2006         311 ITLMARKTKTKYFY  324 (351)
Q Consensus       311 ~~pf~~~~~~~~~~  324 (351)
                      .+||...+..-.+|
T Consensus       240 eYPYsEC~n~AQIY  253 (632)
T KOG0584|consen  240 EYPYSECTNPAQIY  253 (632)
T ss_pred             cCChhhhCCHHHHH
Confidence            99998877665554

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.95  E-value=3.5e-28  Score=217.75  Aligned_cols=195  Identities=17%  Similarity=0.238  Sum_probs=159.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||.|+||.||+|.. .+++.+|+|++...  ......+.+|+++++.+.|+|      |+++++++...+..++||||
T Consensus         1 ~~ig~g~~g~vy~~~~-~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~   73 (250)
T cd05085           1 ELLGKGNFGEVFKGTL-KDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPN------IVKLIGVCTQRQPIYIVMEL   73 (250)
T ss_pred             CccCCCCCceEEEEEe-cCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCC------cCeEEEEEecCCccEEEEEC
Confidence            5799999999999985 57889999998753  233446788999999998887      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++.... ..+++..+..++.|++.+                       |.|+|+.|++|+|++++|+.+.+ 
T Consensus        74 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~~~H~dl~p~nili~~-  128 (250)
T cd05085          74 VPGGDFLSFLRKKK-DELKTKQLVKFALDAAAG-----------------------MAYLESKNCIHRDLAARNCLVGE-  128 (250)
T ss_pred             CCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeecccChheEEEcC-
Confidence            9 899999987654 346777777777777777                       99999999999999999998862 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (250)
T cd05085         129 --------------------------------------------------------------------------------  128 (250)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITL  313 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~p  313 (351)
                                    ...++|+|||++.......    ....+++.|+|||.+.+..++.++|+||+|+++|++++ |..|
T Consensus       129 --------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~ll~~~~~~g~~p  194 (250)
T cd05085         129 --------------NNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRYSSESDVWSYGILLWETFSLGVCP  194 (250)
T ss_pred             --------------CCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCCCCchhHHHHHHHHHHHHhcCCCCC
Confidence                          3458999999886532221    12233567999999988888999999999999999998 9999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |.+.+..+.
T Consensus       195 ~~~~~~~~~  203 (250)
T cd05085         195 YPGMTNQQA  203 (250)
T ss_pred             CCCCCHHHH
Confidence            987655443

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.95  E-value=2.1e-28  Score=224.36  Aligned_cols=199  Identities=16%  Similarity=0.203  Sum_probs=154.8

Q ss_pred             CccccCcccceEEEEEEee-----cCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           1 MCSLNCVASNHVCTNVVYE-----VDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +++||.|+||.||+|.++.     .+..||+|.+....  .....+.+|+.+++.++|+|      |+++++++......
T Consensus        11 ~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~   84 (288)
T cd05061          11 LRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHH------VVRLLGVVSKGQPT   84 (288)
T ss_pred             eeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCC------eeeEEEEEcCCCCc
Confidence            3689999999999997652     35689999986432  22345678999999999877      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCC--------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccc
Q psy2006          74 CIAFEIL-GLSVFDFLKENNY--------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKRE  144 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~--------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~  144 (351)
                      |+||||+ +++|.++++....        .......+..++.|++.|                       |.|||+++++
T Consensus        85 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------l~~lH~~~i~  141 (288)
T cd05061          85 LVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADG-----------------------MAYLNAKKFV  141 (288)
T ss_pred             EEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCCc
Confidence            9999999 8999999976431        112233445555555555                       9999999999


Q ss_pred             ccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         145 VRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       145 h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      |||+|+.|+.+.+                                                                   
T Consensus       142 H~dikp~nili~~-------------------------------------------------------------------  154 (288)
T cd05061         142 HRDLAARNCMVAH-------------------------------------------------------------------  154 (288)
T ss_pred             CCCCChheEEEcC-------------------------------------------------------------------
Confidence            9999999998862                                                                   


Q ss_pred             CchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceee
Q psy2006         225 PSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWS  299 (351)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Diws  299 (351)
                                                  ...++|+|||++.....     ......++..|+|||.+.+..++.++|+||
T Consensus       155 ----------------------------~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dvws  206 (288)
T cd05061         155 ----------------------------DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFTTSSDMWS  206 (288)
T ss_pred             ----------------------------CCcEEECcCCccccccccccccccCCCcccccccCHHHhccCCCChHhHHHH
Confidence                                        34689999998764211     112234567899999998888899999999


Q ss_pred             eeeeeEeecc-ccccccccCCCcee
Q psy2006         300 IGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       300 lG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +||+++++++ |..||.+.+..+++
T Consensus       207 lG~~l~el~~~~~~p~~~~~~~~~~  231 (288)
T cd05061         207 FGVVLWEITSLAEQPYQGLSNEQVL  231 (288)
T ss_pred             HHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            9999999998 89999876655543

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.95  E-value=1.8e-28  Score=229.08  Aligned_cols=194  Identities=12%  Similarity=0.085  Sum_probs=153.9

Q ss_pred             ccccCc--ccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCV--ASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G--~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||.|  +||+||+|.+..+++.||+|++....   ...+.+.+|+.+++.++|+|      |++++++|...++.|+|
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~n------iv~~~~~~~~~~~~~~v   77 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPN------IMTSWTVFTTGSWLWVI   77 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC------cceEeeeEecCCceEEE
Confidence            357777  99999999999999999999997532   23456788999999999888      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.......+++..++.++.|++.|                       |+|||+.|++|||+|+.|+.+
T Consensus        78 ~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~a-----------------------L~~lH~~~ivHrDlkp~Nill  134 (328)
T cd08226          78 SPFMAYGSANSLLKTYFPEGMSEALIGNILFGALRG-----------------------LNYLHQNGYIHRNIKASHILI  134 (328)
T ss_pred             EecccCCCHHHHHHhhcccCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHEEE
Confidence            9999 8899999988755568888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+-                                                                             
T Consensus       135 ~~~-----------------------------------------------------------------------------  137 (328)
T cd08226         135 SGD-----------------------------------------------------------------------------  137 (328)
T ss_pred             eCC-----------------------------------------------------------------------------
Confidence            721                                                                             


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceec----------cccccccccceeeCceeeecC--CCCCccceeeeeee
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD----------EHHSTIVSTRHYRAPEVILEL--GWAQPCDVWSIGCI  303 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~----------~~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwslG~~  303 (351)
                                        ..++++||+.+....          .......++..|+|||.+.+.  .++.++|+||+||+
T Consensus       138 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~DiwslG~~  199 (328)
T cd08226         138 ------------------GLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPELLRQDLYGYNVKSDIYSVGIT  199 (328)
T ss_pred             ------------------CcEEEechHHHhhhhccCccccccccccccccCccCccChhhhcCCCCCCCchhhHHHHHHH
Confidence                              223444443221100          000112235679999999763  46889999999999


Q ss_pred             eEeeccccccccccCC
Q psy2006         304 IFELYLGITLMARKTK  319 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~  319 (351)
                      ++++++|..||.....
T Consensus       200 l~el~~g~~p~~~~~~  215 (328)
T cd08226         200 ACELATGRVPFQDMLR  215 (328)
T ss_pred             HHHHHhCCCCCCCcCh
Confidence            9999999999987654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.95  E-value=2.5e-28  Score=219.27  Aligned_cols=194  Identities=21%  Similarity=0.321  Sum_probs=163.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +.||+|+||.||+|.+..+++.||+|.+....      ...+.+.+|+.+++.++|++      |+++++++......++
T Consensus         6 ~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~------i~~~~~~~~~~~~~~l   79 (258)
T cd06632           6 ELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPN------IVQYLGTEREEDNLYI   79 (258)
T ss_pred             ceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCC------chheeeeEecCCeEEE
Confidence            57999999999999998899999999986532      23456788999999999887      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |+||+ +++|.+++.+..  .+++..+..++.|++.+                       +.|||+.|++|+|+++.|+.
T Consensus        80 v~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dl~~~ni~  134 (258)
T cd06632          80 FLELVPGGSLAKLLKKYG--SFPEPVIRLYTRQILLG-----------------------LEYLHDRNTVHRDIKGANIL  134 (258)
T ss_pred             EEEecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHEE
Confidence            99999 889999998764  46777788888888777                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       135 ~~------------------------------------------------------------------------------  136 (258)
T cd06632         135 VD------------------------------------------------------------------------------  136 (258)
T ss_pred             EC------------------------------------------------------------------------------
Confidence            76                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceeccc--cccccccceeeCceeeecCC-CCCccceeeeeeeeEeecccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~--~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~~l~~l~tG~  311 (351)
                                       ....+||+|||.+......  .....|++.|++||.+.... ++.++|+||+||++|++++|.
T Consensus       137 -----------------~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~~D~~slG~~l~~l~~g~  199 (258)
T cd06632         137 -----------------TNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWSLGCTVLEMATGK  199 (258)
T ss_pred             -----------------CCCCEEEccCccceeccccccccccCCCcceeCHHHhcCCCCCCchhhhHHHHHHHHHHHhCC
Confidence                             2346899999987653222  24466888999999987666 889999999999999999999


Q ss_pred             ccccccCCCc
Q psy2006         312 TLMARKTKTK  321 (351)
Q Consensus       312 ~pf~~~~~~~  321 (351)
                      .||...+..+
T Consensus       200 ~pf~~~~~~~  209 (258)
T cd06632         200 PPWSQLEGVA  209 (258)
T ss_pred             CCcccCcHHH
Confidence            9997766433

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.95  E-value=1.2e-28  Score=222.45  Aligned_cols=191  Identities=24%  Similarity=0.288  Sum_probs=163.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||.|+||.||+|.+..+++.||+|.+...  ......+.+|+++++.+.|+|      |+++++.+...+..++|+||
T Consensus         7 ~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605           7 GELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPY------IVGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             HHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCc------hhhhheeeecCCEEEEEEEe
Confidence            5799999999999999989999999998754  234456788999999998777      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeEEee
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIRLID  157 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~l~D  157 (351)
                      + +++|.+++.... ..+++..+..++.|++.+                       +.|+|+ .+++|+|++++|+.+. 
T Consensus        81 ~~~~~L~~~~~~~~-~~~~~~~~~~~~~~l~~~-----------------------l~~lH~~~~i~H~dl~~~ni~~~-  135 (265)
T cd06605          81 MDGGSLDKILKEVQ-GRIPERILGKIAVAVLKG-----------------------LTYLHEKHKIIHRDVKPSNILVN-  135 (265)
T ss_pred             cCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHcCCCCeecCCCCHHHEEEC-
Confidence            9 699999998764 467888888888888888                       999999 9999999999999876 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (265)
T cd06605         136 --------------------------------------------------------------------------------  135 (265)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccc-cccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                    ..+.++|+|||.+...... .....++..|+|||.+.+..++.++|+||+||+++++++|..||..
T Consensus       136 --------------~~~~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~  201 (265)
T cd06605         136 --------------SRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSDIWSLGLSLIELATGRFPYPP  201 (265)
T ss_pred             --------------CCCCEEEeecccchhhHHHHhhcccCChhccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCc
Confidence                          2346899999987653221 1226778899999999888899999999999999999999999976


Q ss_pred             c
Q psy2006         317 K  317 (351)
Q Consensus       317 ~  317 (351)
                      .
T Consensus       202 ~  202 (265)
T cd06605         202 E  202 (265)
T ss_pred             c
Confidence            5

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.95  E-value=2.5e-28  Score=221.17  Aligned_cols=196  Identities=17%  Similarity=0.201  Sum_probs=159.2

Q ss_pred             ccccCcccceEEEEEEeecCc---EEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS---VVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~---~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||.||+|.+..++.   .+|+|.++..  ....+.+.+|+.+++.++|+|      |+++++++..++..|+|
T Consensus        10 ~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv   83 (267)
T cd05066          10 KVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPN------IIHLEGVVTKSKPVMIV   83 (267)
T ss_pred             eeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCC------cceEEEEEecCCccEEE
Confidence            679999999999999865443   7999998753  233457788999999998877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.... ..+++..+..++.|++.+                       +.+||+.+++|+|+++.|+.+
T Consensus        84 ~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~i~h~dlkp~nili  139 (267)
T cd05066          84 TEYMENGSLDAFLRKHD-GQFTVIQLVGMLRGIASG-----------------------MKYLSDMGYVHRDLAARNILV  139 (267)
T ss_pred             EEcCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeehhhchhcEEE
Confidence            9999 889999998764 356777777777777777                       999999999999999999977


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       140 ~-------------------------------------------------------------------------------  140 (267)
T cd05066         140 N-------------------------------------------------------------------------------  140 (267)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            5                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecccc------ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                      ....++++|||.+.......      ....++..|++||.+.+..++.++|+|||||+++++++
T Consensus       141 ----------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~l~ell~  204 (267)
T cd05066         141 ----------------SNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS  204 (267)
T ss_pred             ----------------CCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCchhhhHHHHHHHHHHhc
Confidence                            13468899999876532211      11223467999999988889999999999999999776


Q ss_pred             -ccccccccCCCce
Q psy2006         310 -GITLMARKTKTKY  322 (351)
Q Consensus       310 -G~~pf~~~~~~~~  322 (351)
                       |..||...+..+.
T Consensus       205 ~g~~p~~~~~~~~~  218 (267)
T cd05066         205 YGERPYWEMSNQDV  218 (267)
T ss_pred             CCCCCcccCCHHHH
Confidence             9999987765543

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.95  E-value=1.8e-28  Score=225.06  Aligned_cols=197  Identities=23%  Similarity=0.309  Sum_probs=159.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCC-CCCCCCcceeeeeeeEeeCCe-----
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGE-KDPNGRHLCVKMLDWFDYHGH-----   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h-~~~~g~~~Iv~l~~~f~~~~~-----   72 (351)
                      +.||+|+||.||+|.+..+++.||+|++....   .....+.+|+.+++.+.| ++      |+++++.+.....     
T Consensus         7 ~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~------i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           7 EKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIY------IVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             eEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCC------ccceeeeEeecCCCCCce
Confidence            57999999999999999999999999987532   223567789999999964 55      9999999987765     


Q ss_pred             EEEEEeccCCCHHHHHHhcC---CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccC
Q psy2006          73 MCIAFEILGLSVFDFLKENN---YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR  149 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~---~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k  149 (351)
                      .|+||||+.++|.+++....   ...+++..+..++.|++.+                       |.|||+++++|||++
T Consensus        81 ~~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~-----------------------L~~LH~~~i~H~dl~  137 (295)
T cd07837          81 LYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKG-----------------------VAHCHKHGVMHRDLK  137 (295)
T ss_pred             EEEEeeccCcCHHHHHHHhcccCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecCCC
Confidence            89999999779999987653   2356777788878877777                       999999999999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      ++|+.+.+                                                                        
T Consensus       138 ~~nil~~~------------------------------------------------------------------------  145 (295)
T cd07837         138 PQNLLVDK------------------------------------------------------------------------  145 (295)
T ss_pred             hHHEEEec------------------------------------------------------------------------
Confidence            99998861                                                                        


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeec-CCCCCccceeeeeeeeE
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~  305 (351)
                                            ....++|+|||.+......   .....+++.|+|||.+.+ ..++.++|+||+||++|
T Consensus       146 ----------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~slG~~l~  203 (295)
T cd07837         146 ----------------------QKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFA  203 (295)
T ss_pred             ----------------------CCCeEEEeecccceecCCCccccCCcccccCCCChHHhhCCCCCCchHHHHHHHHHHH
Confidence                                  1356899999988643221   123456788999998865 45689999999999999


Q ss_pred             eeccccccccccCCCc
Q psy2006         306 ELYLGITLMARKTKTK  321 (351)
Q Consensus       306 ~l~tG~~pf~~~~~~~  321 (351)
                      +|++|..||.+.+..+
T Consensus       204 ~l~~g~~~~~~~~~~~  219 (295)
T cd07837         204 EMSRKQPLFPGDSELQ  219 (295)
T ss_pred             HHHcCCCCCCCCCHHH
Confidence            9999999998765443

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=6.2e-28  Score=220.66  Aligned_cols=190  Identities=19%  Similarity=0.227  Sum_probs=154.8

Q ss_pred             CccccCcccceEEEEEE----eecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--Ce
Q psy2006           1 MCSLNCVASNHVCTNVV----YEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GH   72 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~----~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~   72 (351)
                      +++||+|+||.||+|..    ..+++.||+|.+...  ....+.+.+|+++++.+.|+|      |+++++++...  ..
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~   82 (284)
T cd05079           9 IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHEN------IVKYKGICTEDGGNG   82 (284)
T ss_pred             ceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCC------eeeeeeEEecCCCCc
Confidence            46899999999999974    357899999999743  233456789999999999887      99999998876  47


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      .++||||+ +++|.+++.+.. ..+++..+..++.|++.+                       |+|+|++|++|||+|+.
T Consensus        83 ~~lv~e~~~g~~L~~~l~~~~-~~~~~~~~~~i~~~i~~a-----------------------L~~lH~~gi~H~dlkp~  138 (284)
T cd05079          83 IKLIMEFLPSGSLKEYLPRNK-NKINLKQQLKYAVQICKG-----------------------MDYLGSRQYVHRDLAAR  138 (284)
T ss_pred             eEEEEEccCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecccchh
Confidence            89999999 899999987653 246777778888888777                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.+                                                                          
T Consensus       139 Nil~~~--------------------------------------------------------------------------  144 (284)
T cd05079         139 NVLVES--------------------------------------------------------------------------  144 (284)
T ss_pred             eEEEcC--------------------------------------------------------------------------
Confidence            998861                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecCCCCCccceeeeeeeeE
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~  305 (351)
                                           ...++|+|||++......      .....++..|+|||.+.+..++.++|+||+||+++
T Consensus       145 ---------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~il~  203 (284)
T cd05079         145 ---------------------EHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSKFYIASDVWSFGVTLY  203 (284)
T ss_pred             ---------------------CCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCCCCccccchhhhhhhh
Confidence                                 345899999987643211      12344566799999998888899999999999999


Q ss_pred             eecccccccc
Q psy2006         306 ELYLGITLMA  315 (351)
Q Consensus       306 ~l~tG~~pf~  315 (351)
                      +++|+..|+.
T Consensus       204 ellt~~~~~~  213 (284)
T cd05079         204 ELLTYCDSES  213 (284)
T ss_pred             hhhcCCCCCc
Confidence            9999877653

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.95  E-value=7.6e-29  Score=223.52  Aligned_cols=201  Identities=18%  Similarity=0.167  Sum_probs=158.1

Q ss_pred             ccccCcccceEEEEEEeecCc-------EEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS-------VVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~-------~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      ++||.|+||+||+|.+...+.       .||+|.+.... ...+.+..|+.+++.+.|+|      |+++++++..+++.
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~------iv~~~~~~~~~~~~   74 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKH------LVLNYGVCVCGDES   74 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCC------hhheeeEEEeCCCc
Confidence            579999999999999865443       48899986543 33456778999999998887      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++||||+ +++|.++++.... .+++..+..++.|++.+                       +.|||+++++|||+|+.|
T Consensus        75 ~lv~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~iiH~dlkp~n  130 (258)
T cd05078          75 IMVQEYVKFGSLDTYLKKNKN-LINISWKLEVAKQLAWA-----------------------LHFLEDKGLTHGNVCAKN  130 (258)
T ss_pred             EEEEecCCCCcHHHHHhcCCC-CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCccce
Confidence            9999999 8899999987642 56777788888888877                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.+-|..+.                                                                     
T Consensus       131 ili~~~~~~~~---------------------------------------------------------------------  141 (258)
T cd05078         131 VLLIREEDRKT---------------------------------------------------------------------  141 (258)
T ss_pred             EEEeccccccc---------------------------------------------------------------------
Confidence            99873211000                                                                     


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccc-
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLG-  310 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG-  310 (351)
                                        .....++++|||.+.... ......+++.|+|||++.+. .++.++|+||+||++|++++| 
T Consensus       142 ------------------~~~~~~~l~d~g~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~~l~~g~  202 (258)
T cd05078         142 ------------------GNPPFIKLSDPGISITVL-PKEILLERIPWVPPECIENPQNLSLAADKWSFGTTLWEIFSGG  202 (258)
T ss_pred             ------------------CCCceEEecccccccccC-CchhccccCCccCchhccCCCCCCchhhHHHHHHHHHHHHcCC
Confidence                              012358899999875432 22335678899999999764 468899999999999999998 


Q ss_pred             cccccccCCC
Q psy2006         311 ITLMARKTKT  320 (351)
Q Consensus       311 ~~pf~~~~~~  320 (351)
                      ..||...+..
T Consensus       203 ~~~~~~~~~~  212 (258)
T cd05078         203 DKPLSALDSQ  212 (258)
T ss_pred             CCChhhccHH
Confidence            4666555443

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.95  E-value=3.5e-28  Score=222.61  Aligned_cols=192  Identities=19%  Similarity=0.296  Sum_probs=162.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||.|++|.||++.+..+++.+|+|++.... ...+.+.+|+.+++.+.|++      |++++++|...++.|+|+||+
T Consensus        25 ~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~------vv~~~~~~~~~~~~~~v~e~~   98 (285)
T cd06648          25 VKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPN------IVEMYSSYLVGDELWVVMEFL   98 (285)
T ss_pred             eEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCC------hheEEEEEEcCCeEEEEEecc
Confidence            57999999999999998899999999986432 33456788999999998877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++...   .+++..+..++.|++.+                       +.++|+.|++|||+++.|+.+.+  
T Consensus        99 ~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~-----------------------l~~lH~~~i~H~dl~p~Nil~~~--  150 (285)
T cd06648          99 EGGALTDIVTHT---RMNEEQIATVCLAVLKA-----------------------LSFLHAQGVIHRDIKSDSILLTS--  150 (285)
T ss_pred             CCCCHHHHHHhC---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCChhhEEEcC--
Confidence             89999998772   47777888888888887                       99999999999999999998862  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (285)
T cd06648         151 --------------------------------------------------------------------------------  150 (285)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                   ...++|+|||.+.....   ......|++.|+|||.+.+..++.++|+||+||+++++++|..||..
T Consensus       151 -------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slGv~l~ell~g~~p~~~  217 (285)
T cd06648         151 -------------DGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVDIWSLGIMVIEMVDGEPPYFN  217 (285)
T ss_pred             -------------CCcEEEcccccchhhccCCcccccccCCccccCHHHhcCCCCCCcccHHHHHHHHHHHHhCCCCCcC
Confidence                         34689999997754221   12335688999999999888889999999999999999999999977


Q ss_pred             cCCC
Q psy2006         317 KTKT  320 (351)
Q Consensus       317 ~~~~  320 (351)
                      .+..
T Consensus       218 ~~~~  221 (285)
T cd06648         218 EPPL  221 (285)
T ss_pred             CCHH
Confidence            5543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.95  E-value=2.9e-28  Score=223.66  Aligned_cols=197  Identities=19%  Similarity=0.232  Sum_probs=157.5

Q ss_pred             ccccCcccceEEEEEEee-----cCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYE-----VDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +.||+|+||.||+|.+..     ++..+|+|.+.... ...+.+.+|+.+++.++|+|      |+++++++...+..++
T Consensus        11 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~l   84 (291)
T cd05094          11 RELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEH------IVKFYGVCGDGDPLIM   84 (291)
T ss_pred             eeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCC------cceEEEEEccCCceEE
Confidence            579999999999998643     45679999987543 33456889999999999877      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc
Q psy2006          76 AFEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK  140 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~  140 (351)
                      ||||+ +++|.+++.....              ..+++..+..++.|++.+                       +.|||+
T Consensus        85 v~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~a-----------------------l~~lH~  141 (291)
T cd05094          85 VFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASG-----------------------MVYLAS  141 (291)
T ss_pred             EEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHH-----------------------HHHHHh
Confidence            99999 8999999976532              124455555555555555                       999999


Q ss_pred             ccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCC
Q psy2006         141 KKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPF  220 (351)
Q Consensus       141 ~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~  220 (351)
                      +|++|||+|+.|+.+.+                                                               
T Consensus       142 ~~i~H~dlkp~Nil~~~---------------------------------------------------------------  158 (291)
T cd05094         142 QHFVHRDLATRNCLVGA---------------------------------------------------------------  158 (291)
T ss_pred             CCeeecccCcceEEEcc---------------------------------------------------------------
Confidence            99999999999998862                                                               


Q ss_pred             CCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCcc
Q psy2006         221 FDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPC  295 (351)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~  295 (351)
                                                      ...++|+|||++.....     ......+++.|+|||.+.+..++.++
T Consensus       159 --------------------------------~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  206 (291)
T cd05094         159 --------------------------------NLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTES  206 (291)
T ss_pred             --------------------------------CCcEEECCCCcccccCCCceeecCCCCCcceeecChHHhccCCCCchh
Confidence                                            34689999998764221     11234557889999999888899999


Q ss_pred             ceeeeeeeeEeecc-ccccccccCCCce
Q psy2006         296 DVWSIGCIIFELYL-GITLMARKTKTKY  322 (351)
Q Consensus       296 DiwslG~~l~~l~t-G~~pf~~~~~~~~  322 (351)
                      |+|||||++|+|+| |..||...+..+.
T Consensus       207 Di~slG~il~el~t~g~~p~~~~~~~~~  234 (291)
T cd05094         207 DVWSFGVILWEIFTYGKQPWFQLSNTEV  234 (291)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            99999999999998 9999977665443

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.95  E-value=9.6e-29  Score=223.79  Aligned_cols=202  Identities=16%  Similarity=0.216  Sum_probs=159.4

Q ss_pred             ccccCcccceEEEEEEeecC------cEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVD------SVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~------~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||.|+||.||+|.+....      +.+|+|.+....  .....+.+|+++++.+.|++      |+++++++...+..
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~   74 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN------IVKLLGVCLLNEPQ   74 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCC------eeeEeeeecCCCCe
Confidence            47999999999999976543      789999986532  34556788999999999888      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCC-----CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccc
Q psy2006          74 CIAFEIL-GLSVFDFLKENNY-----LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRR  147 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~-----~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d  147 (351)
                      ++||||+ +++|.+++.....     ..+++..+..++.|++.+                       +.|+|+++++|+|
T Consensus        75 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------l~~lH~~~i~H~d  131 (269)
T cd05044          75 YIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKG-----------------------CVYLEQMHFIHRD  131 (269)
T ss_pred             EEEEeccCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCC
Confidence            9999999 8999999976421     235566666666666666                       9999999999999


Q ss_pred             cCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         148 VRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       148 ~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +++.|+.+.+-+.                                                                   
T Consensus       132 l~p~nil~~~~~~-------------------------------------------------------------------  144 (269)
T cd05044         132 LAARNCLVSEKGY-------------------------------------------------------------------  144 (269)
T ss_pred             CChheEEEecCCC-------------------------------------------------------------------
Confidence            9999998872110                                                                   


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGC  302 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  302 (351)
                                             .....++++|||++.....     ......++..|+|||.+.+..++.++|+|||||
T Consensus       145 -----------------------~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~  201 (269)
T cd05044         145 -----------------------DADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAPESLLDGKFTTQSDVWSFGV  201 (269)
T ss_pred             -----------------------CCCcceEECCcccccccccccccccCcccCCCccccCHHHHccCCcccchhHHHHHH
Confidence                                   0123689999998764221     112234567899999998888999999999999


Q ss_pred             eeEeecc-ccccccccCCCce
Q psy2006         303 IIFELYL-GITLMARKTKTKY  322 (351)
Q Consensus       303 ~l~~l~t-G~~pf~~~~~~~~  322 (351)
                      ++|++++ |..||...+..+.
T Consensus       202 il~ellt~g~~p~~~~~~~~~  222 (269)
T cd05044         202 LMWEILTLGQQPYPALNNQEV  222 (269)
T ss_pred             HHHHHHHcCCCCCcccCHHHH
Confidence            9999998 9999987665544

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=4.9e-28  Score=219.00  Aligned_cols=200  Identities=17%  Similarity=0.103  Sum_probs=156.7

Q ss_pred             ccccCcccceEEEEEEee------------cCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEe
Q psy2006           2 CSLNCVASNHVCTNVVYE------------VDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD   68 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~------------~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~   68 (351)
                      +.||+|+||.||+|....            ....||+|++.... .....+..|+.+++.+.|+|      |+++++++.
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~------iv~~~~~~~   74 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKH------IVLLYGVCV   74 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCC------EeeEEEEEe
Confidence            579999999999998532            23368999987543 23346678899999999888      999999999


Q ss_pred             eCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccc
Q psy2006          69 YHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRR  147 (351)
Q Consensus        69 ~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d  147 (351)
                      .+...++||||+ +++|..++.... ..+++..+..++.|++.|                       ++|||+++++|||
T Consensus        75 ~~~~~~lv~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~ivH~d  130 (262)
T cd05077          75 RDVENIMVEEFVEFGPLDLFMHRKS-DVLTTPWKFKVAKQLASA-----------------------LSYLEDKDLVHGN  130 (262)
T ss_pred             cCCCCEEEEecccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHhhhCCeECCC
Confidence            999999999999 788888876543 357888888888888888                       9999999999999


Q ss_pred             cCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         148 VRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       148 ~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +|+.|+.+...|...                                                                 
T Consensus       131 lkp~Nill~~~~~~~-----------------------------------------------------------------  145 (262)
T cd05077         131 VCTKNILLAREGIDG-----------------------------------------------------------------  145 (262)
T ss_pred             CCcccEEEecCCccC-----------------------------------------------------------------
Confidence            999999987322100                                                                 


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeee-cCCCCCccceeeeeeeeEe
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~~l~~  306 (351)
                                             .....++++|||.+..... .....++..|+|||.+. +..++.++|+|||||++|+
T Consensus       146 -----------------------~~~~~~~l~d~g~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~~l~e  201 (262)
T cd05077         146 -----------------------ECGPFIKLSDPGIPITVLS-RQECVERIPWIAPECVEDSKNLSIAADKWSFGTTLWE  201 (262)
T ss_pred             -----------------------CCCceeEeCCCCCCccccC-cccccccccccChhhhcCCCCCCchhHHHHHHHHHHH
Confidence                                   0123489999998754322 23456788899999886 4667899999999999999


Q ss_pred             ec-cccccccccCCC
Q psy2006         307 LY-LGITLMARKTKT  320 (351)
Q Consensus       307 l~-tG~~pf~~~~~~  320 (351)
                      ++ +|..||...+..
T Consensus       202 l~~~~~~p~~~~~~~  216 (262)
T cd05077         202 ICYNGEIPLKDKTLA  216 (262)
T ss_pred             HHhCCCCCCCCcchh
Confidence            97 689998766543

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.95  E-value=1.8e-28  Score=224.06  Aligned_cols=194  Identities=26%  Similarity=0.408  Sum_probs=160.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||.||+|.+..+++.||+|++....   ...+.+.+|+++++.+.|+|      |+++++.|...+..++|||
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           7 GVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHEN------IVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             EEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCC------eeehhheEEECCEEEEEEe
Confidence            57999999999999999899999999987532   23467789999999999877      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |+++++.+.+.... ..+++..+..++.|++.+                       +.|||+.+++|+|+++.|+.+.+ 
T Consensus        81 ~~~~~~l~~~~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~LH~~~i~H~dl~~~ni~~~~-  135 (288)
T cd07833          81 YVERTLLELLEASP-GGLPPDAVRSYIWQLLQA-----------------------IAYCHSHNIIHRDIKPENILVSE-  135 (288)
T ss_pred             cCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHeEECC-
Confidence            99555555544433 246777777777777777                       99999999999999999998862 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (288)
T cd07833         136 --------------------------------------------------------------------------------  135 (288)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ...++|+|||.+.....    ......++..|+|||.+.+. .++.++|+||+|++++++++|.+|
T Consensus       136 --------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Dv~slG~~l~~l~~g~~~  201 (288)
T cd07833         136 --------------SGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIGCIMAELLDGEPL  201 (288)
T ss_pred             --------------CCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCcCchhhHHHHHHHHHHHHhCCCC
Confidence                          35689999998765332    22345678899999999887 779999999999999999999999


Q ss_pred             ccccCCC
Q psy2006         314 MARKTKT  320 (351)
Q Consensus       314 f~~~~~~  320 (351)
                      |.+.+..
T Consensus       202 ~~~~~~~  208 (288)
T cd07833         202 FPGDSDI  208 (288)
T ss_pred             CCCCCHH
Confidence            9876543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.95  E-value=2.1e-28  Score=225.97  Aligned_cols=194  Identities=22%  Similarity=0.364  Sum_probs=158.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-------   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-------   71 (351)
                      ++||+|+||.||+|.+..+++.||+|.+....   .......+|+++++.+.|++      |+++++++...+       
T Consensus        18 ~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~   91 (310)
T cd07865          18 AKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHEN------VVNLIEICRTKATPYNRYK   91 (310)
T ss_pred             EEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCC------ccceEEEEecccccccCCC
Confidence            57999999999999999999999999986432   22335568999999999888      999999987654       


Q ss_pred             -eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          72 -HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        72 -~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                       +.++||||++++|.+++.... ..+++..++.++.|++.|                       |.|||++|++|+|+++
T Consensus        92 ~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~i~H~dl~p  147 (310)
T cd07865          92 GSFYLVFEFCEHDLAGLLSNKN-VKFTLSEIKKVMKMLLNG-----------------------LYYIHRNKILHRDMKA  147 (310)
T ss_pred             ceEEEEEcCCCcCHHHHHHhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCCH
Confidence             569999999889999887653 357888888888888888                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .|+.+.                                                                          
T Consensus       148 ~nil~~--------------------------------------------------------------------------  153 (310)
T cd07865         148 ANILIT--------------------------------------------------------------------------  153 (310)
T ss_pred             HHEEEC--------------------------------------------------------------------------
Confidence            999876                                                                          


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-------cccccccceeeCceeeecC-CCCCccceeeeee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-------HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGC  302 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-------~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~  302 (351)
                                           ....++|+|||++......       .....++..|+|||.+.+. .++.++|+||+|+
T Consensus       154 ---------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~  212 (310)
T cd07865         154 ---------------------KDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMWGAGC  212 (310)
T ss_pred             ---------------------CCCcEEECcCCCcccccCCcccCCCCccCcccCccccCcHHhcCCcccCchhhhHHHHH
Confidence                                 2346889999987643211       1234567889999988664 4688999999999


Q ss_pred             eeEeeccccccccccCCC
Q psy2006         303 IIFELYLGITLMARKTKT  320 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~~~  320 (351)
                      ++|++++|..||.+.+..
T Consensus       213 ~l~el~t~~~~~~~~~~~  230 (310)
T cd07865         213 IMAEMWTRSPIMQGNTEQ  230 (310)
T ss_pred             HHHHHHhCCCCCCCCCHH
Confidence            999999999999876543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.95  E-value=2.4e-28  Score=221.56  Aligned_cols=197  Identities=15%  Similarity=0.138  Sum_probs=155.3

Q ss_pred             ccccCcccceEEEEEEeecCc--EEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS--VVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH------   70 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~--~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~------   70 (351)
                      ++||+|+||.||+|.+..+++  .||+|.++..   ....+.+.+|+.+++.++|+|      |+++++.+...      
T Consensus         5 ~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~   78 (272)
T cd05075           5 KTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPN------VMRLIGVCLQTVESEGY   78 (272)
T ss_pred             cccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCC------cceEEEEEccCCcccCC
Confidence            679999999999999876665  6999998653   334566788999999999888      99999876432      


Q ss_pred             CeEEEEEecc-CCCHHHHHHhcC----CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccc
Q psy2006          71 GHMCIAFEIL-GLSVFDFLKENN----YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREV  145 (351)
Q Consensus        71 ~~~~lV~E~~-g~sL~~~l~~~~----~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h  145 (351)
                      ...++||||+ +++|.+++....    ...+++..+..++.|++.|                       |+|||+++++|
T Consensus        79 ~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H  135 (272)
T cd05075          79 PSPVVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASG-----------------------MEYLSSKSFIH  135 (272)
T ss_pred             CCcEEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeec
Confidence            2679999999 899999885431    1236677777777777777                       99999999999


Q ss_pred             cccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         146 RRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       146 ~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      ||+|+.|+.+.                                                                     
T Consensus       136 ~dlkp~Nil~~---------------------------------------------------------------------  146 (272)
T cd05075         136 RDLAARNCMLN---------------------------------------------------------------------  146 (272)
T ss_pred             cccchhheEEc---------------------------------------------------------------------
Confidence            99999999775                                                                     


Q ss_pred             chhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeee
Q psy2006         226 SSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSI  300 (351)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  300 (351)
                                                ....++|+|||++......     .....+++.|++||.+.+..++.++|+|||
T Consensus       147 --------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Di~sl  200 (272)
T cd05075         147 --------------------------ENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIESLADRVYTTKSDVWSF  200 (272)
T ss_pred             --------------------------CCCCEEECCCCcccccCcccceecCCcccCCcccCCHHHccCCCcChHHHHHHH
Confidence                                      1345889999988653221     122345678999999988889999999999


Q ss_pred             eeeeEeecc-ccccccccCCCce
Q psy2006         301 GCIIFELYL-GITLMARKTKTKY  322 (351)
Q Consensus       301 G~~l~~l~t-G~~pf~~~~~~~~  322 (351)
                      ||++|++++ |..||.+.+..+.
T Consensus       201 G~il~el~~~g~~p~~~~~~~~~  223 (272)
T cd05075         201 GVTMWEIATRGQTPYPGVENSEI  223 (272)
T ss_pred             HHHHHHHHcCCCCCCCCCCHHHH
Confidence            999999998 8999987655443

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.95  E-value=2.6e-28  Score=223.34  Aligned_cols=193  Identities=22%  Similarity=0.270  Sum_probs=157.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||.|+||.||++.+..+++.||+|.+....  .....+.+|+.++.++. |++      |+++++++..++..++|||
T Consensus        10 ~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~------iv~~~~~~~~~~~~~~~~e   83 (288)
T cd06616          10 GEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPY------IVKFYGALFREGDCWICME   83 (288)
T ss_pred             HHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCC------EeeeeeEEecCCcEEEEEe
Confidence            57999999999999999999999999997532  33456788999999986 666      9999999999999999999


Q ss_pred             ccCCCHHHHHH---hcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCeE
Q psy2006          79 ILGLSVFDFLK---ENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDIR  154 (351)
Q Consensus        79 ~~g~sL~~~l~---~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni~  154 (351)
                      |+++++.++..   ......+++..+..++.|++.+                       |+|||+. +++|||+++.|+.
T Consensus        84 ~~~~~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~-----------------------l~~lh~~~~i~H~dlkp~Nil  140 (288)
T cd06616          84 LMDISLDKFYKYVYEVLKSVIPEEILGKIAVATVKA-----------------------LNYLKEELKIIHRDVKPSNIL  140 (288)
T ss_pred             cccCCHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-----------------------HHHHhhcCCeeccCCCHHHEE
Confidence            99877766543   2233467888888888888887                       9999974 9999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       141 ~~------------------------------------------------------------------------------  142 (288)
T cd06616         141 LD------------------------------------------------------------------------------  142 (288)
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            76                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecC---CCCCccceeeeeeeeEeecc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILEL---GWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~---~~~~~~DiwslG~~l~~l~t  309 (351)
                                       ....++|+|||++.....  ......|++.|+|||.+.+.   .++.++|+||+||++|++++
T Consensus       143 -----------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~  205 (288)
T cd06616         143 -----------------RNGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSARDGYDVRSDVWSLGITLYEVAT  205 (288)
T ss_pred             -----------------cCCcEEEeecchhHHhccCCccccccCccCccCHHHhccccccCCcchhhhhHHHHHHHHHHh
Confidence                             234689999998864322  22334678899999998765   57899999999999999999


Q ss_pred             ccccccccC
Q psy2006         310 GITLMARKT  318 (351)
Q Consensus       310 G~~pf~~~~  318 (351)
                      |..||....
T Consensus       206 g~~p~~~~~  214 (288)
T cd06616         206 GKFPYPKWN  214 (288)
T ss_pred             CCCCchhcc
Confidence            999997654

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.95  E-value=4.2e-28  Score=217.33  Aligned_cols=194  Identities=18%  Similarity=0.248  Sum_probs=160.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||.|+||.||+|.+.. ++.||+|.+....  .....+..|+++++.+.|++      |+++++++....+.++||||
T Consensus         1 ~~lg~g~~g~v~~~~~~~-~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~v~e~   73 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKG-NTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPN------IVKLIGVCVQKQPIYIVMEL   73 (251)
T ss_pred             CccccCCCceEEEEEEeC-CCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC------eEEEEEEEecCCCeEEEEEc
Confidence            589999999999999876 9999999987532  23467788999999999887      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++.... ..+++..+..++.|++.+                       +.|||+++++|||+++.|+.+.  
T Consensus        74 ~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~-----------------------l~~lH~~~i~h~di~p~nili~--  127 (251)
T cd05041          74 VPGGSLLTFLRKKK-NRLTVKKLLQMSLDAAAG-----------------------MEYLESKNCIHRDLAARNCLVG--  127 (251)
T ss_pred             CCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEehhhcCcceEEEc--
Confidence            9 899999987653 256777788888888877                       9999999999999999999876  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (251)
T cd05041         128 --------------------------------------------------------------------------------  127 (251)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecccc-----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GIT  312 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~  312 (351)
                                   ....++|+|||++.......     ....++..|+|||.+.+..++.++|+|||||+++++++ |..
T Consensus       128 -------------~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~i~~~l~t~~~~  194 (251)
T cd05041         128 -------------ENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGRYTSESDVWSYGILLWETFSLGDT  194 (251)
T ss_pred             -------------CCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCCCCcchhHHHHHHHHHHHHhccCC
Confidence                         23468999999886533111     11223456999999988888999999999999999998 899


Q ss_pred             cccccCCCc
Q psy2006         313 LMARKTKTK  321 (351)
Q Consensus       313 pf~~~~~~~  321 (351)
                      ||...+..+
T Consensus       195 p~~~~~~~~  203 (251)
T cd05041         195 PYPGMSNQQ  203 (251)
T ss_pred             CCccCCHHH
Confidence            997766444

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=2.2e-28  Score=224.92  Aligned_cols=207  Identities=16%  Similarity=0.211  Sum_probs=154.6

Q ss_pred             ccccCcccceEEEEEEeec--------------CcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeee
Q psy2006           2 CSLNCVASNHVCTNVVYEV--------------DSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLD   65 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~--------------~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~   65 (351)
                      ++||+|+||.||+|.+...              ...||+|++...  ....+.+.+|+++++.++|++      |+++++
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~------i~~~~~   84 (295)
T cd05097          11 EKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPN------IIRLLG   84 (295)
T ss_pred             hccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCC------cCeEEE
Confidence            6799999999999987543              235999999753  233456788999999999887      999999


Q ss_pred             eEeeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccc
Q psy2006          66 WFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKRE  144 (351)
Q Consensus        66 ~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~  144 (351)
                      ++...+..|+||||+ +++|.+++........             ....++....++..+..++.|++.|+.|||+++++
T Consensus        85 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~-------------~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~  151 (295)
T cd05097          85 VCVSDDPLCMITEYMENGDLNQFLSQREIEST-------------FTHANNIPSVSIANLLYMAVQIASGMKYLASLNFV  151 (295)
T ss_pred             EEcCCCccEEEEecCCCCcHHHHHHhcccccc-------------ccccccCCcccHHHHHHHHHHHHHHHHHHHhcCee
Confidence            999999999999999 8999999865421000             00011112233444444445555559999999999


Q ss_pred             ccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         145 VRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       145 h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      |+|+|+.|+.+.+                                                                   
T Consensus       152 H~dlkp~Nill~~-------------------------------------------------------------------  164 (295)
T cd05097         152 HRDLATRNCLVGN-------------------------------------------------------------------  164 (295)
T ss_pred             ccccChhhEEEcC-------------------------------------------------------------------
Confidence            9999999998862                                                                   


Q ss_pred             CchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceee
Q psy2006         225 PSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWS  299 (351)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~Diws  299 (351)
                                                  ...+||+|||++......     .....+++.|+|||.+.+..++.++|+||
T Consensus       165 ----------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwS  216 (295)
T cd05097         165 ----------------------------HYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWESILLGKFTTASDVWA  216 (295)
T ss_pred             ----------------------------CCcEEecccccccccccCcceeccCcCcCceeecChhhhccCCcCchhhHHH
Confidence                                        345899999987642111     12234467899999998888999999999


Q ss_pred             eeeeeEeecc--ccccccccCCCce
Q psy2006         300 IGCIIFELYL--GITLMARKTKTKY  322 (351)
Q Consensus       300 lG~~l~~l~t--G~~pf~~~~~~~~  322 (351)
                      |||+++++++  |..||...+..+.
T Consensus       217 lG~~l~el~~~~~~~p~~~~~~~~~  241 (295)
T cd05097         217 FGVTLWEMFTLCKEQPYSLLSDEQV  241 (295)
T ss_pred             HHHHHHHHHHcCCCCCCcccChHHH
Confidence            9999999987  7789987665543

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.95  E-value=1e-28  Score=225.57  Aligned_cols=193  Identities=22%  Similarity=0.367  Sum_probs=158.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||.|+||.||+|.+..+++.||+|++....   ...+.+.+|+++++.++|+|      |++++++|...++.|+||
T Consensus         6 ~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~   79 (286)
T cd07846           6 LGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHEN------LVNLIEVFRRKKRLYLVF   79 (286)
T ss_pred             eeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcc------hhhHHHhcccCCeEEEEE
Confidence            468999999999999998889999999986432   22456778999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.++.....  .+++..++.++.|++.+                       |.|||+.+++|+|+++.|+.+.
T Consensus        80 e~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~-----------------------l~~LH~~~i~h~~l~p~ni~~~  134 (286)
T cd07846          80 EFVDHTVLDDLEKYPN--GLDESRVRKYLFQILRG-----------------------IEFCHSHNIIHRDIKPENILVS  134 (286)
T ss_pred             ecCCccHHHHHHhccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCCHHHEEEC
Confidence            999 666666554432  47788888888888877                       9999999999999999999876


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (286)
T cd07846         135 --------------------------------------------------------------------------------  134 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                     ....++|+|||++.....   ......++..|+|||.+.+. .++.++|+||+||+++++++|.+
T Consensus       135 ---------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~~g~~  199 (286)
T cd07846         135 ---------------QSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVGCLVTEMLTGEP  199 (286)
T ss_pred             ---------------CCCcEEEEeeeeeeeccCCccccCcccceeeccCcHHhccccccCchHhHHHHHHHHHHHHcCCC
Confidence                           234689999998765322   12235678899999998764 46788999999999999999999


Q ss_pred             cccccCC
Q psy2006         313 LMARKTK  319 (351)
Q Consensus       313 pf~~~~~  319 (351)
                      ||...+.
T Consensus       200 ~~~~~~~  206 (286)
T cd07846         200 LFPGDSD  206 (286)
T ss_pred             CCCCCch
Confidence            9976654

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.95  E-value=3.2e-28  Score=220.86  Aligned_cols=193  Identities=19%  Similarity=0.311  Sum_probs=160.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-----------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-----------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH   70 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-----------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~   70 (351)
                      +.||.|+||.||+|.+..+++.||+|.+....           ...+.+.+|+.+++.++|++      |+++++++...
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~   80 (272)
T cd06629           7 ELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLN------IVQYLGFETTE   80 (272)
T ss_pred             ceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCC------cceEEEEeccC
Confidence            57999999999999998899999999986321           11235678999999999877      99999999999


Q ss_pred             CeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccC
Q psy2006          71 GHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR  149 (351)
Q Consensus        71 ~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k  149 (351)
                      +..++||||+ +++|.+++.+..  .+++..++.++.|++.+                       |.|||+.+++|+|++
T Consensus        81 ~~~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl~  135 (272)
T cd06629          81 EYLSIFLEYVPGGSIGSCLRTYG--RFEEQLVRFFTEQVLEG-----------------------LAYLHSKGILHRDLK  135 (272)
T ss_pred             CceEEEEecCCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHH-----------------------HHHHhhCCeeecCCC
Confidence            9999999999 999999998764  57888888888888888                       999999999999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      ++|+.+.                                                                         
T Consensus       136 ~~nil~~-------------------------------------------------------------------------  142 (272)
T cd06629         136 ADNLLVD-------------------------------------------------------------------------  142 (272)
T ss_pred             hhhEEEc-------------------------------------------------------------------------
Confidence            9998876                                                                         


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCC--CCCccceeeeee
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELG--WAQPCDVWSIGC  302 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~--~~~~~DiwslG~  302 (351)
                                            ....++++|||++.....     ......|+..|+|||.+....  ++.++|+||+|+
T Consensus       143 ----------------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~~Dv~slG~  200 (272)
T cd06629         143 ----------------------ADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWSLGC  200 (272)
T ss_pred             ----------------------CCCeEEEeeccccccccccccccccccccCCccccCHHHhccccCCCCccchhHHHHH
Confidence                                  234688999998764321     122346788999999987654  789999999999


Q ss_pred             eeEeeccccccccccCCC
Q psy2006         303 IIFELYLGITLMARKTKT  320 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~~~  320 (351)
                      +++++++|..||...+..
T Consensus       201 ~l~~l~~g~~p~~~~~~~  218 (272)
T cd06629         201 VVLEMFAGRRPWSDEEAI  218 (272)
T ss_pred             HHHHHHhCCCCCcCcchH
Confidence            999999999999755443

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.95  E-value=3.6e-28  Score=225.63  Aligned_cols=198  Identities=19%  Similarity=0.291  Sum_probs=155.5

Q ss_pred             ccccCcccceEEEEEEee-------cCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYE-------VDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-------~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      ++||+|+||.||+|.+..       ....||+|.+...  ......+..|+++++.+ .|+|      |+++++++...+
T Consensus        18 ~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~------iv~~~~~~~~~~   91 (314)
T cd05099          18 KPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKN------IINLLGVCTQEG   91 (314)
T ss_pred             eeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCC------eeeEEEEEccCC
Confidence            679999999999998642       3567999998753  22345677899999999 4776      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhh
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD  136 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~  136 (351)
                      ..|+||||+ +++|.+++.....              ..++...+..++.|++.+                       |.
T Consensus        92 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~a-----------------------L~  148 (314)
T cd05099          92 PLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARG-----------------------ME  148 (314)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHH-----------------------HH
Confidence            999999999 8999999977531              124455555555555555                       99


Q ss_pred             ccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhh
Q psy2006         137 YNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEAL  216 (351)
Q Consensus       137 ~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l  216 (351)
                      |||++|++|+|+|+.|+.+.+                                                           
T Consensus       149 ~lH~~gi~H~dlkp~Nill~~-----------------------------------------------------------  169 (314)
T cd05099         149 YLESRRCIHRDLAARNVLVTE-----------------------------------------------------------  169 (314)
T ss_pred             HHHHCCeeeccccceeEEEcC-----------------------------------------------------------
Confidence            999999999999999998862                                                           


Q ss_pred             cCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCC
Q psy2006         217 RHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGW  291 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~  291 (351)
                                                          ...+||+|||.+......     .....++..|+|||.+.+..+
T Consensus       170 ------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  213 (314)
T cd05099         170 ------------------------------------DNVMKIADFGLARGVHDIDYYKKTSNGRLPVKWMAPEALFDRVY  213 (314)
T ss_pred             ------------------------------------CCcEEEccccccccccccccccccccCCCCccccCHHHHccCCc
Confidence                                                346899999988643211     112234467999999988888


Q ss_pred             CCccceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         292 AQPCDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       292 ~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +.++|+|||||++|++++ |..||.+.+..+.+
T Consensus       214 ~~~~DiwslG~~l~el~~~g~~p~~~~~~~~~~  246 (314)
T cd05099         214 THQSDVWSFGILMWEIFTLGGSPYPGIPVEELF  246 (314)
T ss_pred             CccchhhHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            999999999999999998 89999877655544

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.95  E-value=1.5e-28  Score=230.43  Aligned_cols=191  Identities=26%  Similarity=0.433  Sum_probs=159.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-----eE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-----HM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-----~~   73 (351)
                      ++||.|+||+||+|.+..+++.||||.+...   ........+|+.+++.++|+|      |+++++++....     +.
T Consensus        11 ~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------i~~~~~~~~~~~~~~~~~~   84 (337)
T cd07858          11 KPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHEN------VIAIKDIMPPPHREAFNDV   84 (337)
T ss_pred             EEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCC------ccchHHheecccccccCcE
Confidence            5799999999999999999999999998642   222345678999999999877      999999887553     68


Q ss_pred             EEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          74 CIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        74 ~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |+|+||++++|.+++....  .+++..++.++.|++.|                       |.|||+++++|+|+++.|+
T Consensus        85 ~lv~e~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~a-----------------------L~~LH~~~i~H~dlkp~Ni  139 (337)
T cd07858          85 YIVYELMDTDLHQIIRSSQ--TLSDDHCQYFLYQLLRG-----------------------LKYIHSANVLHRDLKPSNL  139 (337)
T ss_pred             EEEEeCCCCCHHHHHhcCC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEecCCCCHHHE
Confidence            9999999999999987654  57888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       140 l~~-----------------------------------------------------------------------------  142 (337)
T cd07858         140 LLN-----------------------------------------------------------------------------  142 (337)
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            876                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeec-CCCCCccceeeeeeeeEeecc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~t  309 (351)
                                        ....++|+|||++......   .....++..|+|||.+.. ..++.++|+||+||++|++++
T Consensus       143 ------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~  204 (337)
T cd07858         143 ------------------ANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSEYTTAIDVWSVGCIFAELLG  204 (337)
T ss_pred             ------------------CCCCEEECcCccccccCCCcccccccccccCccChHHHhcCCCCCCcccHHHHHHHHHHHHc
Confidence                              2346899999988653322   234567889999998865 467899999999999999999


Q ss_pred             ccccccccC
Q psy2006         310 GITLMARKT  318 (351)
Q Consensus       310 G~~pf~~~~  318 (351)
                      |.+||.+.+
T Consensus       205 g~~pf~~~~  213 (337)
T cd07858         205 RKPLFPGKD  213 (337)
T ss_pred             CCCCCCCCC
Confidence            999997654

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.95  E-value=3e-28  Score=225.03  Aligned_cols=212  Identities=17%  Similarity=0.243  Sum_probs=156.8

Q ss_pred             ccccCcccceEEEEEEee-------cCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYE-------VDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-------~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      +.||+|+||.||+|....       .+..||+|++...  ......+.+|+.+++.+ +|+|      |+++++.+...+
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~------i~~~~~~~~~~~   94 (304)
T cd05101          21 KPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN------IINLLGACTQDG   94 (304)
T ss_pred             ceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCC------chheeEEEecCC
Confidence            679999999999997532       3458999999743  23345678899999999 6777      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      ..++||||+ +++|.+++...........  ..    +..   .....++...+..+..|++.||.|||++|++|||+|+
T Consensus        95 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~--~~----~~~---~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp  165 (304)
T cd05101          95 PLYVIVEYASKGNLREYLRARRPPGMEYS--YD----IAR---VPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAA  165 (304)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccc--cc----ccc---CCcccccHHHHHHHHHHHHHHHHHHHHCCeeeccccc
Confidence            999999999 8899999987532110000  00    000   0001233444445555555559999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .|+.+.+                                                                         
T Consensus       166 ~Nili~~-------------------------------------------------------------------------  172 (304)
T cd05101         166 RNVLVTE-------------------------------------------------------------------------  172 (304)
T ss_pred             ceEEEcC-------------------------------------------------------------------------
Confidence            9998862                                                                         


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeE
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~  305 (351)
                                            ...++|+|||.+.....     ......+++.|+|||.+.+..++.++|+|||||++|
T Consensus       173 ----------------------~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~  230 (304)
T cd05101         173 ----------------------NNVMKIADFGLARDVNNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMW  230 (304)
T ss_pred             ----------------------CCcEEECCCccceecccccccccccCCCCCceeeCchhhccCCCCchhhHHHHHHHHH
Confidence                                  34689999998865322     112234567899999998888999999999999999


Q ss_pred             eecc-ccccccccCCCcee
Q psy2006         306 ELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       306 ~l~t-G~~pf~~~~~~~~~  323 (351)
                      ++++ |..||.+.+..+.+
T Consensus       231 el~~~g~~p~~~~~~~~~~  249 (304)
T cd05101         231 EIFTLGGSPYPGIPVEELF  249 (304)
T ss_pred             HHHcCCCCCcccCCHHHHH
Confidence            9998 88999887766654

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>KOG0983|consensus

Probab=99.95  E-value=1.3e-28  Score=212.98  Aligned_cols=193  Identities=21%  Similarity=0.283  Sum_probs=157.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ..||.|..|.||+++.+.++..+|||.+.+..  ...++++..+.++.. .|..|.    ||+.+++|..+...++.||.
T Consensus        98 ~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~-s~dcpy----IV~c~GyFi~n~dV~IcMel  172 (391)
T KOG0983|consen   98 GDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLK-SHDCPY----IVQCFGYFITNTDVFICMEL  172 (391)
T ss_pred             HhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhh-ccCCCe----eeeeeeEEeeCchHHHHHHH
Confidence            46899999999999999999999999997642  223455666666654 344444    99999999999999999999


Q ss_pred             cCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeEEeec
Q psy2006          80 LGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~l~Df  158 (351)
                      |...+..++++-. .++||..+-.+...+..|                       |.||-+ ++|+|||+||+||.+.  
T Consensus       173 Ms~C~ekLlkrik-~piPE~ilGk~tva~v~A-----------------------L~YLKeKH~viHRDvKPSNILlD--  226 (391)
T KOG0983|consen  173 MSTCAEKLLKRIK-GPIPERILGKMTVAIVKA-----------------------LYYLKEKHGVIHRDVKPSNILLD--  226 (391)
T ss_pred             HHHHHHHHHHHhc-CCchHHhhhhhHHHHHHH-----------------------HHHHHHhcceeecccCccceEEc--
Confidence            9888888877765 467777777766666666                       999975 5899999999999887  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       227 --------------------------------------------------------------------------------  226 (391)
T KOG0983|consen  227 --------------------------------------------------------------------------------  226 (391)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeec---CCCCCccceeeeeeeeEeecccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                   .++++|++|||.+.+.  ....+..+|++.|||||.+--   ..|...+|+||||++++||+||++|
T Consensus       227 -------------e~GniKlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~~kYDiRaDVWSlGITlveLaTg~yP  293 (391)
T KOG0983|consen  227 -------------ERGNIKLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPDKPKYDIRADVWSLGITLVELATGQYP  293 (391)
T ss_pred             -------------cCCCEEeecccccceeecccccccccCCccccCccccCCCCCCccchhhhhhhhccchhhhhcccCC
Confidence                         3678999999998763  334466899999999998863   3578899999999999999999999


Q ss_pred             ccccC
Q psy2006         314 MARKT  318 (351)
Q Consensus       314 f~~~~  318 (351)
                      |.+.+
T Consensus       294 y~~c~  298 (391)
T KOG0983|consen  294 YKGCK  298 (391)
T ss_pred             CCCCC
Confidence            99954

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.95  E-value=1.3e-28  Score=230.69  Aligned_cols=190  Identities=25%  Similarity=0.475  Sum_probs=156.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-----eEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-----HMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-----~~~   74 (351)
                      ++||+|+||.||+|++..+++.||+|++...  ......+.+|+.+++.++|+|      |+++++++....     +.|
T Consensus        11 ~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~~~~~~   84 (336)
T cd07849          11 SYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHEN------IIGILDIIRPPSFESFNDVY   84 (336)
T ss_pred             EEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCC------cCchhheeecccccccceEE
Confidence            5799999999999999999999999999642  233455678999999999877      999999876543     689


Q ss_pred             EEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          75 IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        75 lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      +|+||++++|.+.+...   .+++..++.++.|++.|                       |.+||+.|++|||+|+.|+.
T Consensus        85 lv~e~~~~~l~~~~~~~---~l~~~~~~~i~~ql~~a-----------------------L~~LH~~~ivH~dlkp~Nil  138 (336)
T cd07849          85 IVQELMETDLYKLIKTQ---HLSNDHIQYFLYQILRG-----------------------LKYIHSANVLHRDLKPSNLL  138 (336)
T ss_pred             EEehhcccCHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccCCCHHHEE
Confidence            99999988999887653   47888888888888887                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       139 l~------------------------------------------------------------------------------  140 (336)
T cd07849         139 LN------------------------------------------------------------------------------  140 (336)
T ss_pred             EC------------------------------------------------------------------------------
Confidence            76                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeec-CCCCCccceeeeeeeeEee
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l  307 (351)
                                       ....++|+|||++.....      ......|++.|+|||.+.+ ..++.++|+||+||+++++
T Consensus       141 -----------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGvil~el  203 (336)
T cd07849         141 -----------------TNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLNSKGYTKAIDIWSVGCILAEM  203 (336)
T ss_pred             -----------------CCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence                             234689999998764321      1123467889999998765 4678999999999999999


Q ss_pred             ccccccccccC
Q psy2006         308 YLGITLMARKT  318 (351)
Q Consensus       308 ~tG~~pf~~~~  318 (351)
                      ++|..||.+.+
T Consensus       204 ~~G~~~f~~~~  214 (336)
T cd07849         204 LSNRPLFPGKD  214 (336)
T ss_pred             HhCCCCCCCCC
Confidence            99999997654

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.95  E-value=2.2e-28  Score=230.23  Aligned_cols=191  Identities=24%  Similarity=0.466  Sum_probs=159.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC------Ce
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH------GH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~------~~   72 (351)
                      ++||+|+||.||+|.+..+++.||+|++....   ...+.+.+|+.++++++|+|      |+++++++...      ..
T Consensus        23 ~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~   96 (345)
T cd07877          23 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHEN------VIGLLDVFTPARSLEEFND   96 (345)
T ss_pred             EEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCc------ccceeeeeeeccccccccc
Confidence            57999999999999998999999999997532   22355678999999999888      99999998654      35


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      .|+++++++++|.+++...   .+++..++.++.|++.|                       |+|||+.|++|||+++.|
T Consensus        97 ~~lv~~~~~~~L~~~~~~~---~l~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~dlkp~N  150 (345)
T cd07877          97 VYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRG-----------------------LKYIHSADIIHRDLKPSN  150 (345)
T ss_pred             EEEEehhcccCHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecCCChHH
Confidence            8999999999999887653   46777778778877777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       151 Ill~----------------------------------------------------------------------------  154 (345)
T cd07877         151 LAVN----------------------------------------------------------------------------  154 (345)
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            9876                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                         ..+.++|+|||++...........+++.|+|||.+.+ ..++.++|+||+||+++++++|.
T Consensus       155 -------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslG~il~el~~g~  215 (345)
T cd07877         155 -------------------EDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR  215 (345)
T ss_pred             -------------------CCCCEEEecccccccccccccccccCCCccCHHHHhCccCCCchhhHHHHHHHHHHHHhCC
Confidence                               2346899999998765544445678889999998866 46788999999999999999999


Q ss_pred             ccccccCC
Q psy2006         312 TLMARKTK  319 (351)
Q Consensus       312 ~pf~~~~~  319 (351)
                      .||...+.
T Consensus       216 ~pf~~~~~  223 (345)
T cd07877         216 TLFPGTDH  223 (345)
T ss_pred             CCCCCCCH
Confidence            99976543

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.95  E-value=3.5e-28  Score=228.63  Aligned_cols=218  Identities=19%  Similarity=0.225  Sum_probs=158.0

Q ss_pred             CccccCcccceEEEEEEe-----ecCcEEEEEEecch--hhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCC-
Q psy2006           1 MCSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV--EKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHG-   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~-   71 (351)
                      .++||.|+||+||+|.+.     .+++.||||++...  ......+.+|+.+|.++. |+|      |+++++++...+ 
T Consensus        12 ~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~n------iv~~~~~~~~~~~   85 (343)
T cd05103          12 GKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN------VVNLLGACTKPGG   85 (343)
T ss_pred             cccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCcc------HhhhcceeecCCC
Confidence            368999999999999853     46789999999753  233456788999999995 455      999999886554 


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCCCC-------------------CchHHHHHHHHHH-----------------------
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNYLP-------------------YSLDQVRHMSYQL-----------------------  108 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~~~-------------------~~~~~~~~~~~ql-----------------------  108 (351)
                      .+++||||+ +++|.+++.......                   +++...+......                       
T Consensus        86 ~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (343)
T cd05103          86 PLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEE  165 (343)
T ss_pred             ceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhh
Confidence            789999999 999999997643110                   1111000000000                       


Q ss_pred             HHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCCh
Q psy2006         109 IYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDD  188 (351)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~  188 (351)
                      ..........++...+..+..|++.||.|||+++++|||+|+.|+.+.+                               
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~-------------------------------  214 (343)
T cd05103         166 AEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSE-------------------------------  214 (343)
T ss_pred             hhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcC-------------------------------
Confidence            0000000124677778888899999999999999999999999998761                               


Q ss_pred             hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceec
Q psy2006         189 EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD  268 (351)
Q Consensus       189 ~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~  268 (351)
                                                                                      ...++|+|||++....
T Consensus       215 ----------------------------------------------------------------~~~~kl~dfg~~~~~~  230 (343)
T cd05103         215 ----------------------------------------------------------------NNVVKICDFGLARDIY  230 (343)
T ss_pred             ----------------------------------------------------------------CCcEEEEecccccccc
Confidence                                                                            3468999999876422


Q ss_pred             c-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccCC
Q psy2006         269 E-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKTK  319 (351)
Q Consensus       269 ~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~~  319 (351)
                      .     ......+++.|+|||.+.+..++.++|+|||||++|++++ |..||.....
T Consensus       231 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~  287 (343)
T cd05103         231 KDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI  287 (343)
T ss_pred             cCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCccc
Confidence            1     1122334567999999988889999999999999999996 9999976543

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.95  E-value=4.1e-28  Score=221.45  Aligned_cols=197  Identities=23%  Similarity=0.354  Sum_probs=163.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhC---CCCCCCCcceeeeeeeEeeCCe---
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIG---EKDPNGRHLCVKMLDWFDYHGH---   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~---h~~~~g~~~Iv~l~~~f~~~~~---   72 (351)
                      +.||.|+||.||+|.++.+++.||+|.+....   .......+|+.+++++.   |++      |+++++.+...+.   
T Consensus         5 ~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~------i~~~~~~~~~~~~~~~   78 (287)
T cd07838           5 AEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPN------IVRLLDVCHGPRTDRE   78 (287)
T ss_pred             EEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCC------cceEEEEEeeccCCCC
Confidence            67999999999999998889999999997432   22344567888888774   555      9999999998776   


Q ss_pred             --EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          73 --MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        73 --~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                        .+++|||++++|.+++.......+++..+..++.|++.|                       |.|||+.+++|+|+++
T Consensus        79 ~~~~l~~e~~~~~l~~~l~~~~~~~l~~~~~~~~~~~i~~a-----------------------l~~LH~~~i~h~~l~~  135 (287)
T cd07838          79 LKLTLVFEHVDQDLATYLSKCPKPGLPPETIKDLMRQLLRG-----------------------VDFLHSHRIVHRDLKP  135 (287)
T ss_pred             ceeEEEehhcccCHHHHHHHccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeccCCh
Confidence              999999998899999887654467888888888888888                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .|+.+.+                                                                         
T Consensus       136 ~nili~~-------------------------------------------------------------------------  142 (287)
T cd07838         136 QNILVTS-------------------------------------------------------------------------  142 (287)
T ss_pred             hhEEEcc-------------------------------------------------------------------------
Confidence            9998872                                                                         


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                            ...++|+|||.+.....  ......+++.|+|||.+.+..++.++|+||+||++|+|+
T Consensus       143 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Di~s~G~~l~~l~  200 (287)
T cd07838         143 ----------------------DGQVKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCIFAELF  200 (287)
T ss_pred             ----------------------CCCEEEeccCcceeccCCcccccccccccccChHHhccCCCCCcchhhhHHHHHHHHH
Confidence                                  35689999998865432  223445788899999998888999999999999999999


Q ss_pred             cccccccccCCCce
Q psy2006         309 LGITLMARKTKTKY  322 (351)
Q Consensus       309 tG~~pf~~~~~~~~  322 (351)
                      +|.+||.+.+..+.
T Consensus       201 ~~~~~~~~~~~~~~  214 (287)
T cd07838         201 RRRPLFRGTSEADQ  214 (287)
T ss_pred             hCCCcccCCChHHH
Confidence            99999988765543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.95  E-value=4.2e-28  Score=226.74  Aligned_cols=191  Identities=25%  Similarity=0.426  Sum_probs=160.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee-CCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY-HGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~-~~~~~lV~   77 (351)
                      +.||.|+||.||+|.+..+++.||+|++.+.   ....+.+.+|+.+++.+.|+|      |++++++|.. ....|+|+
T Consensus        16 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~~lv~   89 (328)
T cd07856          16 QPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHEN------IISLSDIFISPLEDIYFVT   89 (328)
T ss_pred             EeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCC------eeeEeeeEecCCCcEEEEe
Confidence            5799999999999999999999999998642   223456778999999999887      9999999976 45899999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||++++|.++++..   ++++..+..++.|++.+                       |.|||+++++|+|+++.|+.+.+
T Consensus        90 e~~~~~L~~~~~~~---~~~~~~~~~~~~ql~~a-----------------------L~~LH~~~iiH~dl~p~Nili~~  143 (328)
T cd07856          90 ELLGTDLHRLLTSR---PLEKQFIQYFLYQILRG-----------------------LKYVHSAGVVHRDLKPSNILINE  143 (328)
T ss_pred             ehhccCHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCHHHEeECC
Confidence            99998999887653   46777788888888887                       99999999999999999998762


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (328)
T cd07856         144 --------------------------------------------------------------------------------  143 (328)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                     ...++|+|||.+...........+++.|+|||.+.+ ..++.++|+||+||+++++++|..||..
T Consensus       144 ---------------~~~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~tg~~~f~~  208 (328)
T cd07856         144 ---------------NCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDIWSAGCIFAEMLEGKPLFPG  208 (328)
T ss_pred             ---------------CCCEEeCccccccccCCCcCCCcccccccCceeeeccCCcCcHHHHHHHHHHHHHHHhCCCCCCC
Confidence                           346899999998765544455677889999998866 5678999999999999999999999976


Q ss_pred             cCC
Q psy2006         317 KTK  319 (351)
Q Consensus       317 ~~~  319 (351)
                      .+.
T Consensus       209 ~~~  211 (328)
T cd07856         209 KDH  211 (328)
T ss_pred             CCH
Confidence            553

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.95  E-value=2.6e-28  Score=222.66  Aligned_cols=196  Identities=23%  Similarity=0.387  Sum_probs=164.0

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~~l   75 (351)
                      +++||.|+||.||+|.+..+++.||+|++....   .....+.+|+.+++.+.|+|      |+++++++...  +..++
T Consensus         4 ~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~~l   77 (287)
T cd07840           4 IAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPN------IVRLKEIVTSKGKGSIYM   77 (287)
T ss_pred             eEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCC------eeeheeeEecCCCCcEEE
Confidence            367999999999999998899999999998642   23356778999999999877      99999999988  79999


Q ss_pred             EEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          76 AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||||++++|.+++.... ..+++..+..++.|++.|                       |.+||+.|++|+|+++.|+.+
T Consensus        78 v~e~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~a-----------------------l~~LH~~~~~h~dl~p~nil~  133 (287)
T cd07840          78 VFEYMDHDLTGLLDSPE-VKFTESQIKCYMKQLLEG-----------------------LQYLHSNGILHRDIKGSNILI  133 (287)
T ss_pred             EeccccccHHHHHhccC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceeccCcHHHeEE
Confidence            99999889999987653 367888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       134 ~~------------------------------------------------------------------------------  135 (287)
T cd07840         134 NN------------------------------------------------------------------------------  135 (287)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            62                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                       ...++|+|||.+......    .....++..|+|||.+.+ ..++.++|+|||||+++++++|
T Consensus       136 -----------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Dv~slG~~l~el~t~  198 (287)
T cd07840         136 -----------------DGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVGCILAELFLG  198 (287)
T ss_pred             -----------------CCCEEEccccceeeccCCCcccccccccccccCCceeeEccccCChHHHHHHHHHHHHHHHhC
Confidence                             356899999988654322    233456788999998876 4578999999999999999999


Q ss_pred             cccccccCCCc
Q psy2006         311 ITLMARKTKTK  321 (351)
Q Consensus       311 ~~pf~~~~~~~  321 (351)
                      ..||...+..+
T Consensus       199 ~~p~~~~~~~~  209 (287)
T cd07840         199 KPIFQGSTELE  209 (287)
T ss_pred             CCCCCCCChHH
Confidence            99998776543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=5.7e-28  Score=220.22  Aligned_cols=195  Identities=17%  Similarity=0.212  Sum_probs=159.4

Q ss_pred             ccccCcccceEEEEEEeecCc----EEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS----VVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~----~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++||+|+||+||+|.++.+++    .||+|++....  .....+.+|+.+++.++|+|      |+++++++.. ...++
T Consensus        13 ~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~-~~~~~   85 (279)
T cd05057          13 KVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPH------VVRLLGICLS-SQVQL   85 (279)
T ss_pred             ceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCC------cceEEEEEec-CceEE
Confidence            679999999999999876654    69999987542  33456788999999998877      9999999877 79999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||+ +++|.+++.... ..+++..+..++.|++.|                       +.|||+.+++|+|+++.|+.
T Consensus        86 v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~LH~~~i~H~di~p~nil  141 (279)
T cd05057          86 ITQLMPLGCLLDYVRNHK-DNIGSQYLLNWCVQIAKG-----------------------MSYLEEKRLVHRDLAARNVL  141 (279)
T ss_pred             EEecCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEEecccCcceEE
Confidence            99999 899999998754 247788888888888888                       99999999999999999988


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.+                                                                             
T Consensus       142 ~~~-----------------------------------------------------------------------------  144 (279)
T cd05057         142 VKT-----------------------------------------------------------------------------  144 (279)
T ss_pred             EcC-----------------------------------------------------------------------------
Confidence            761                                                                             


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceeccccc-----cccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHS-----TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~-----~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                        ...++|+|||.+........     ...++..|++||.+....++.++|+||+||+++++++
T Consensus       145 ------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Di~slG~~l~el~~  206 (279)
T cd05057         145 ------------------PQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSDVWSYGVTVWELMT  206 (279)
T ss_pred             ------------------CCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhhHHHHHHHHHHHhc
Confidence                              34689999998865322111     1223467999999988888999999999999999998


Q ss_pred             -ccccccccCCCce
Q psy2006         310 -GITLMARKTKTKY  322 (351)
Q Consensus       310 -G~~pf~~~~~~~~  322 (351)
                       |..||.+.+..+.
T Consensus       207 ~g~~p~~~~~~~~~  220 (279)
T cd05057         207 FGAKPYEGIPAVEI  220 (279)
T ss_pred             CCCCCCCCCCHHHH
Confidence             9999988765543

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.95  E-value=4.5e-28  Score=222.00  Aligned_cols=193  Identities=20%  Similarity=0.212  Sum_probs=159.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC--eEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--HMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~--~~~lV   76 (351)
                      +++||.|++|.||+|.+..+++.||+|.+....  .....+.+|+++++.++|+|      |++++++|....  ++|+|
T Consensus         6 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~~~lv   79 (287)
T cd06621           6 LSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPY------IVKYYGAFLDESSSSIGIA   79 (287)
T ss_pred             EEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCC------eeeeeeEEEccCCCeEEEE
Confidence            368999999999999998899999999997532  23456789999999999887      999999986544  79999


Q ss_pred             Eecc-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          77 FEIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |||+ +++|.+++...  ....+++..+..++.|++.+                       |.|+|+.+++|+|+++.|+
T Consensus        80 ~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~-----------------------L~~lH~~~i~H~dl~~~ni  136 (287)
T cd06621          80 MEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKG-----------------------LSYLHSRKIIHRDIKPSNI  136 (287)
T ss_pred             EEecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHE
Confidence            9999 88999887643  22356777777777777777                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+                                                                            
T Consensus       137 l~~~----------------------------------------------------------------------------  140 (287)
T cd06621         137 LLTR----------------------------------------------------------------------------  140 (287)
T ss_pred             EEec----------------------------------------------------------------------------
Confidence            8761                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc-ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                         ...++|+|||++..... ......++..|++||.+.+..++.++|+||+||++|++++|..
T Consensus       141 -------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g~~  201 (287)
T cd06621         141 -------------------KGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPYSITSDVWSLGLTLLEVAQNRF  201 (287)
T ss_pred             -------------------CCeEEEeeccccccccccccccccCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence                               34589999998764322 2234456788999999988889999999999999999999999


Q ss_pred             ccccc
Q psy2006         313 LMARK  317 (351)
Q Consensus       313 pf~~~  317 (351)
                      ||...
T Consensus       202 p~~~~  206 (287)
T cd06621         202 PFPPE  206 (287)
T ss_pred             CCCcc
Confidence            99866

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.95  E-value=8.4e-28  Score=223.16  Aligned_cols=194  Identities=20%  Similarity=0.236  Sum_probs=162.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|++..+++.||+|++...    ......+.+|+.+++.++|++      ++++++++......|+||
T Consensus        27 ~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~  100 (313)
T cd06633          27 HEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPN------TIEYKGCYLKEHTAWLVM  100 (313)
T ss_pred             eeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCC------CccEEEEEEeCCEEEEEE
Confidence            5799999999999999889999999999642    223356778999999999887      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||+.+++.+++.... .++++..+..++.|++.+                       +.|||+.|++|+|+++.|+.+. 
T Consensus       101 e~~~~~l~~~l~~~~-~~l~~~~~~~~~~qi~~a-----------------------l~~LH~~gi~H~dl~p~nili~-  155 (313)
T cd06633         101 EYCLGSASDLLEVHK-KPLQEVEIAAITHGALQG-----------------------LAYLHSHNMIHRDIKAGNILLT-  155 (313)
T ss_pred             ecCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCChhhEEEC-
Confidence            999889999887654 357777777777877777                       9999999999999999999876 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (313)
T cd06633         156 --------------------------------------------------------------------------------  155 (313)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeee---cCCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVIL---ELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ..+.++|+|||++.... ......|+..|+|||.+.   ...++.++|+||+||++|++++|..||
T Consensus       156 --------------~~~~~kL~dfg~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~sDv~slGvil~el~~g~~p~  220 (313)
T cd06633         156 --------------EPGQVKLADFGSASKSS-PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL  220 (313)
T ss_pred             --------------CCCCEEEeecCCCcccC-CCCCccccccccChhhccccCCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                          13468999999875432 234567888999999985   345788999999999999999999999


Q ss_pred             cccCCCc
Q psy2006         315 ARKTKTK  321 (351)
Q Consensus       315 ~~~~~~~  321 (351)
                      ...+...
T Consensus       221 ~~~~~~~  227 (313)
T cd06633         221 FNMNAMS  227 (313)
T ss_pred             CCCChHH
Confidence            8766444

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.95  E-value=1.5e-28  Score=229.44  Aligned_cols=194  Identities=26%  Similarity=0.423  Sum_probs=165.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-----eE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-----HM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-----~~   73 (351)
                      ++||.|+||.||+|++..+++.||+|++...   ....+.+.+|+.+++.+.|++      |+++++++...+     ++
T Consensus         6 ~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~~~~   79 (330)
T cd07834           6 KPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHEN------IIGLLDILRPPSPEDFNDV   79 (330)
T ss_pred             eeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcc------hhhhhhhhcccCcccccce
Confidence            6799999999999999888999999999753   233456788999999999877      999999998875     89


Q ss_pred             EEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          74 CIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        74 ~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |+||||++++|.+++.+..  .+++..+..++.|++.+                       |.+||++|++|+|+++.|+
T Consensus        80 ~lv~e~~~~~l~~~l~~~~--~l~~~~~~~i~~~l~~~-----------------------l~~LH~~gi~H~dlkp~ni  134 (330)
T cd07834          80 YIVTELMETDLHKVIKSPQ--PLTDDHIQYFLYQILRG-----------------------LKYLHSANVIHRDLKPSNI  134 (330)
T ss_pred             EEEecchhhhHHHHHhCCC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHE
Confidence            9999999889999987654  67788888888888887                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       135 li~-----------------------------------------------------------------------------  137 (330)
T cd07834         135 LVN-----------------------------------------------------------------------------  137 (330)
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            886                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecC-CCCCccceeeeeeeeEe
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~  306 (351)
                                        ....++|+|||.+......      .....+++.|+|||.+.+. .++.++|+||+||++++
T Consensus       138 ------------------~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~il~~  199 (330)
T cd07834         138 ------------------SNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLSSSRYTKAIDIWSVGCIFAE  199 (330)
T ss_pred             ------------------CCCCEEEcccCceEeecccccccccccccccccCcCCceeeecccCCCcchhHHHHHHHHHH
Confidence                              2356899999988763322      3345678899999999887 78999999999999999


Q ss_pred             eccccccccccCCCc
Q psy2006         307 LYLGITLMARKTKTK  321 (351)
Q Consensus       307 l~tG~~pf~~~~~~~  321 (351)
                      +++|.+||.+.+..+
T Consensus       200 l~~g~~pf~~~~~~~  214 (330)
T cd07834         200 LLTRKPLFPGRDYID  214 (330)
T ss_pred             HHcCCCCcCCCCHHH
Confidence            999999998877544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>KOG0695|consensus

Probab=99.95  E-value=2.4e-29  Score=223.09  Aligned_cols=191  Identities=17%  Similarity=0.296  Sum_probs=162.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||+|+|+.|-+++.+++.+.||+|++++.    ....+-+..|-.+..+.+     .+.++|.|...|.....+++|
T Consensus       255 l~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~as-----n~pflvglhscfqtesrlffv  329 (593)
T KOG0695|consen  255 LRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQAS-----NNPFLVGLHSCFQTESRLFFV  329 (593)
T ss_pred             eeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhcc-----CCCeEEehhhhhcccceEEEE
Confidence            46799999999999999999999999999864    233455677777777654     233499999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      .||+ ||+|.=.|++.+  .                       ++++.+++|..+++.||.|||++||+.||+|..|+.|
T Consensus       330 ieyv~ggdlmfhmqrqr--k-----------------------lpeeharfys~ei~lal~flh~rgiiyrdlkldnvll  384 (593)
T KOG0695|consen  330 IEYVNGGDLMFHMQRQR--K-----------------------LPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLL  384 (593)
T ss_pred             EEEecCcceeeehhhhh--c-----------------------CcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEE
Confidence            9999 999987777765  3                       5556666666666666999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       385 d-------------------------------------------------------------------------------  385 (593)
T KOG0695|consen  385 D-------------------------------------------------------------------------------  385 (593)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcce---eccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|+|+|+-   .....++.+|||.|.|||++.+..|+..+|+|+||++++||..|+.
T Consensus       386 ----------------aeghikltdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrs  449 (593)
T KOG0695|consen  386 ----------------AEGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRS  449 (593)
T ss_pred             ----------------cCCceeecccchhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCC
Confidence                            467899999999975   3445578999999999999999999999999999999999999999


Q ss_pred             cccc
Q psy2006         313 LMAR  316 (351)
Q Consensus       313 pf~~  316 (351)
                      ||+-
T Consensus       450 pfdi  453 (593)
T KOG0695|consen  450 PFDI  453 (593)
T ss_pred             Ccce
Confidence            9964

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.95  E-value=9.1e-29  Score=223.46  Aligned_cols=198  Identities=23%  Similarity=0.279  Sum_probs=161.6

Q ss_pred             ccccCcccceEEEEEEe----ecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVY----EVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~----~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +.||.|+||.||+|...    ..+..|+||+++..  ....+.+.+|++++++++|+|      |+++++++...+..++
T Consensus         5 ~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~n------i~~~~g~~~~~~~~~l   78 (259)
T PF07714_consen    5 KQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPN------IVKLYGFCIENEPLFL   78 (259)
T ss_dssp             EEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTT------BE-EEEEEESSSSEEE
T ss_pred             eEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccc------cccccccccccccccc
Confidence            57999999999999987    35789999999643  233577889999999999888      9999999998888999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |+||+ +++|.+++.......++......++.|++.|                       |.|||+++++|+++++.|+.
T Consensus        79 v~e~~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~-----------------------l~~Lh~~~iiH~~l~~~nil  135 (259)
T PF07714_consen   79 VMEYCPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEA-----------------------LSYLHSNNIIHGNLSPSNIL  135 (259)
T ss_dssp             EEE--TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHH-----------------------HHHHHHTTEEEST-SGGGEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc-----------------------cccccccccccccccccccc
Confidence            99999 7899999999844567888888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       136 l~------------------------------------------------------------------------------  137 (259)
T PF07714_consen  136 LD------------------------------------------------------------------------------  137 (259)
T ss_dssp             EE------------------------------------------------------------------------------
T ss_pred             cc------------------------------------------------------------------------------
Confidence            77                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                       ....+||+|||++.....     ......+...|+|||.+.+..++.++||||||+++||+++
T Consensus       138 -----------------~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~ksDVysfG~~l~ei~~  200 (259)
T PF07714_consen  138 -----------------SNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEYTKKSDVYSFGMLLYEILT  200 (259)
T ss_dssp             -----------------TTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEESHHHHHHHHHHHHHHHHT
T ss_pred             -----------------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                             245799999998865421     1223445678999999988889999999999999999999


Q ss_pred             -ccccccccCCCcee
Q psy2006         310 -GITLMARKTKTKYF  323 (351)
Q Consensus       310 -G~~pf~~~~~~~~~  323 (351)
                       |..||...+..++.
T Consensus       201 ~~~~p~~~~~~~~~~  215 (259)
T PF07714_consen  201 LGKFPFSDYDNEEII  215 (259)
T ss_dssp             TSSGTTTTSCHHHHH
T ss_pred             ccccccccccccccc
Confidence             78999887666543

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.95  E-value=2.1e-28  Score=220.37  Aligned_cols=204  Identities=25%  Similarity=0.404  Sum_probs=167.9

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ||.|+||.||+|.+..+++.||+|++....    ...+.+.+|++++++++|+|      |+++++.+......|+|+||
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~------i~~~~~~~~~~~~~~lv~e~   74 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPY------VVKLYYSFQGKKNLYLVMEY   74 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcc------hhHHHHheecCcEEEEEEec
Confidence            799999999999998889999999997542    34456788999999999877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++.+..  .+++..+..++.|++.+                       |.|||+.+++|+|+++.|+.+.  
T Consensus        75 ~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~-----------------------L~~lH~~~i~H~di~~~nil~~--  127 (265)
T cd05579          75 LPGGDLASLLENVG--SLDEDVARIYIAEIVLA-----------------------LEYLHSNGIIHRDLKPDNILID--  127 (265)
T ss_pred             CCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHcCeecCCCCHHHeEEc--
Confidence            9 889999998765  57888888888888888                       9999999999999999998775  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (265)
T cd05579         128 --------------------------------------------------------------------------------  127 (265)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc-----------ccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                   ....++|+|||++.....           ......+++.|++||.......+.++|+||||++++++
T Consensus       128 -------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~~~~~l  194 (265)
T cd05579         128 -------------SNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTVDWWSLGCILYEF  194 (265)
T ss_pred             -------------CCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHhcCCCCCcchhhHHHHHHHHHH
Confidence                         234678888887654211           12335677889999999888889999999999999999


Q ss_pred             ccccccccccCCCceee---ecccCCccc
Q psy2006         308 YLGITLMARKTKTKYFY---HGKLDWDEK  333 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~~~---~~~~~~~~~  333 (351)
                      ++|..||...+..+.+.   .+.+.|...
T Consensus       195 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  223 (265)
T cd05579         195 LVGIPPFHGETPEEIFQNILNGKIEWPED  223 (265)
T ss_pred             HhCCCCCCCCCHHHHHHHHhcCCcCCCcc
Confidence            99999998877665543   234444443

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.95  E-value=3.7e-28  Score=223.52  Aligned_cols=198  Identities=16%  Similarity=0.192  Sum_probs=154.0

Q ss_pred             ccccCcccceEEEEEEee----------------cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeee
Q psy2006           2 CSLNCVASNHVCTNVVYE----------------VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKM   63 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~----------------~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l   63 (351)
                      ++||+|+||+||++.+..                ++..||+|++...  ....+.+.+|+++|+.++|++      |+++
T Consensus        11 ~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~------i~~~   84 (296)
T cd05095          11 EKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPN------IIRL   84 (296)
T ss_pred             eeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC------cceE
Confidence            679999999999986432                3557999999753  233456789999999999877      9999


Q ss_pred             eeeEeeCCeEEEEEecc-CCCHHHHHHhcCCC---------CCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHh
Q psy2006          64 LDWFDYHGHMCIAFEIL-GLSVFDFLKENNYL---------PYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIY  133 (351)
Q Consensus        64 ~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~---------~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~  133 (351)
                      ++++...+..|+||||+ +++|.+++......         .+++..+..++.|++.                       
T Consensus        85 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-----------------------  141 (296)
T cd05095          85 LAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIAS-----------------------  141 (296)
T ss_pred             EEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHH-----------------------
Confidence            99999999999999999 89999999875321         1333444555555554                       


Q ss_pred             hhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChh
Q psy2006         134 AVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLS  213 (351)
Q Consensus       134 ~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~  213 (351)
                      |++|||+.|++|+|+|+.|+.+.+                                                        
T Consensus       142 al~~lH~~~i~H~dlkp~Nili~~--------------------------------------------------------  165 (296)
T cd05095         142 GMKYLSSLNFVHRDLATRNCLVGK--------------------------------------------------------  165 (296)
T ss_pred             HHHHHHHCCeecccCChheEEEcC--------------------------------------------------------
Confidence            499999999999999999998862                                                        


Q ss_pred             hhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeec
Q psy2006         214 EALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILE  288 (351)
Q Consensus       214 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~  288 (351)
                                                             ...++|+|||++......     .....+++.|++||...+
T Consensus       166 ---------------------------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~  206 (296)
T cd05095         166 ---------------------------------------NYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMSWESILL  206 (296)
T ss_pred             ---------------------------------------CCCEEeccCcccccccCCcceeccCcCcCccccCCHHHHhc
Confidence                                                   346899999987642211     112334567999998888


Q ss_pred             CCCCCccceeeeeeeeEeecc--ccccccccCCCcee
Q psy2006         289 LGWAQPCDVWSIGCIIFELYL--GITLMARKTKTKYF  323 (351)
Q Consensus       289 ~~~~~~~DiwslG~~l~~l~t--G~~pf~~~~~~~~~  323 (351)
                      ..++.++|+|||||++|++++  |..||...+..+..
T Consensus       207 ~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~~~~~~  243 (296)
T cd05095         207 GKFTTASDVWAFGVTLWEILTLCKEQPYSQLSDEQVI  243 (296)
T ss_pred             CCccchhhhhHHHHHHHHHHHhCCCCCccccChHHHH
Confidence            889999999999999999998  88999877655543

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.95  E-value=4e-28  Score=222.58  Aligned_cols=218  Identities=17%  Similarity=0.210  Sum_probs=156.9

Q ss_pred             ccccCcccceEEEEEEee-----cCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYE-----VDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|.+..     ..+.+|+|.+....  ...+.+.+|+++++.+.|+|      |+++++.+...+..+
T Consensus         6 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~   79 (290)
T cd05045           6 KTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPH------VIKLYGACSQDGPLL   79 (290)
T ss_pred             ccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCC------EeeEEEEEecCCCcE
Confidence            679999999999999753     33679999987532  23456788999999999887      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchH--HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLD--QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~--~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +|+||+ +++|.+++...........  .... ....  ...+..-++++..+..+..|++.||.|||+.+++|||+++.
T Consensus        80 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~  156 (290)
T cd05045          80 LIVEYAKYGSLRSFLRESRKVGPSYLGSDGNR-NSSY--LDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAAR  156 (290)
T ss_pred             EEEEecCCCCHHHHHHhcCCcccccccccccc-cccc--ccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhh
Confidence            999999 8999999875421000000  0000 0000  00000113444444555555555599999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.|                                                                          
T Consensus       157 nill~~--------------------------------------------------------------------------  162 (290)
T cd05045         157 NVLVAE--------------------------------------------------------------------------  162 (290)
T ss_pred             eEEEcC--------------------------------------------------------------------------
Confidence            998862                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                           ...++|+|||++......     .....++..|+|||.+.+..++.++|+|||||++++
T Consensus       163 ---------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~e  221 (290)
T cd05045         163 ---------------------GRKMKISDFGLSRDVYEEDSYVKRSKGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWE  221 (290)
T ss_pred             ---------------------CCcEEeccccccccccCccchhcccCCCCCccccCHHHHccCCcchHhHHHHHHHHHHH
Confidence                                 346899999988642111     122344568999999888888999999999999999


Q ss_pred             ecc-ccccccccCCCcee
Q psy2006         307 LYL-GITLMARKTKTKYF  323 (351)
Q Consensus       307 l~t-G~~pf~~~~~~~~~  323 (351)
                      |++ |..||.+.+..+++
T Consensus       222 l~t~g~~p~~~~~~~~~~  239 (290)
T cd05045         222 IVTLGGNPYPGIAPERLF  239 (290)
T ss_pred             HHhcCCCCCCCCCHHHHH
Confidence            998 99999887766543

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.95  E-value=7.3e-28  Score=217.15  Aligned_cols=191  Identities=21%  Similarity=0.278  Sum_probs=161.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh---hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK---YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~---~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||.|+||.||+|.+..+++.||+|++.....   ..+.+.+|+.+++.++|++      |+++++.+...+..++|+|
T Consensus         6 ~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~------i~~~~~~~~~~~~~~lv~e   79 (264)
T cd06626           6 NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPN------LVKYYGVEVHREKVYIFME   79 (264)
T ss_pred             eEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCC------hhheeeeEecCCEEEEEEe
Confidence            689999999999999988999999999976432   4567889999999999877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++....  .+++..+..++.|++.+                       +.|||+.|++|+|+++.|+.+.+
T Consensus        80 ~~~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~-----------------------l~~lh~~~i~H~dl~~~nil~~~  134 (264)
T cd06626          80 YCSGGTLEELLEHGR--ILDEHVIRVYTLQLLEG-----------------------LAYLHSHGIVHRDIKPANIFLDH  134 (264)
T ss_pred             cCCCCcHHHHHhhcC--CCChHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHEEECC
Confidence            99 899999987753  46777788888888877                       99999999999999999998862


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (264)
T cd06626         135 --------------------------------------------------------------------------------  134 (264)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccc-------cccccccceeeCceeeecCC---CCCccceeeeeeeeEee
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-------HSTIVSTRHYRAPEVILELG---WAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-------~~~~~gt~~y~aPE~~~~~~---~~~~~DiwslG~~l~~l  307 (351)
                                     ...++|+|||.+......       .....+++.|++||.+.+..   .+.++|+||+|++++++
T Consensus       135 ---------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~Dv~s~G~il~~l  199 (264)
T cd06626         135 ---------------NGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLEM  199 (264)
T ss_pred             ---------------CCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCCCCCCCcccchHHHHHHHHHH
Confidence                           356899999987653221       11346778999999998765   78999999999999999


Q ss_pred             ccccccccccC
Q psy2006         308 YLGITLMARKT  318 (351)
Q Consensus       308 ~tG~~pf~~~~  318 (351)
                      ++|..||....
T Consensus       200 ~~g~~pf~~~~  210 (264)
T cd06626         200 ATGKRPWSELD  210 (264)
T ss_pred             HhCCCCccCCc
Confidence            99999997653

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.95  E-value=1.2e-27  Score=222.56  Aligned_cols=194  Identities=21%  Similarity=0.248  Sum_probs=161.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||.||+|++..+++.||+|++...    ......+..|+++++.+.|+|      ++++++++..+...++||
T Consensus        31 ~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~  104 (317)
T cd06635          31 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPN------SIEYKGCYLREHTAWLVM  104 (317)
T ss_pred             heeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCC------EEEEEEEEeeCCeEEEEE
Confidence            5799999999999999889999999999643    123346778999999999887      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||+.++|.+.+.... .++++..+..++.|++.+                       +.|||+.+++|+|+++.|+.+.+
T Consensus       105 e~~~g~l~~~~~~~~-~~l~~~~~~~i~~~i~~~-----------------------l~~lH~~~i~H~dL~p~Nil~~~  160 (317)
T cd06635         105 EYCLGSASDLLEVHK-KPLQEVEIAAITHGALQG-----------------------LAYLHSHNMIHRDIKAGNILLTE  160 (317)
T ss_pred             eCCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCcccEEECC
Confidence            999889988886654 357777777778877777                       99999999999999999998762


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (317)
T cd06635         161 --------------------------------------------------------------------------------  160 (317)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeee---cCCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVIL---ELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                     ...++|+|||++.... ......|++.|+|||.+.   ...++.++|+||+||+++++++|..||
T Consensus       161 ---------------~~~~kl~dfg~~~~~~-~~~~~~~~~~y~aPE~~~~~~~~~~~~~~Dv~slGvil~el~~g~~p~  224 (317)
T cd06635         161 ---------------PGQVKLADFGSASIAS-PANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL  224 (317)
T ss_pred             ---------------CCCEEEecCCCccccC-CcccccCCccccChhhhhcCCCCCCCccccHHHHHHHHHHHHhCCCCC
Confidence                           3468999999876433 233456888999999874   345788999999999999999999999


Q ss_pred             cccCCCc
Q psy2006         315 ARKTKTK  321 (351)
Q Consensus       315 ~~~~~~~  321 (351)
                      ...+..+
T Consensus       225 ~~~~~~~  231 (317)
T cd06635         225 FNMNAMS  231 (317)
T ss_pred             CCccHHH
Confidence            8765444

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.95  E-value=2.4e-28  Score=228.79  Aligned_cols=192  Identities=21%  Similarity=0.394  Sum_probs=159.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC----CeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH----GHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~----~~~~   74 (351)
                      +.||.|+||.||+|.+..+++.||+|++....   .....+.+|+.+|+.++|+|      |++++++|...    .++|
T Consensus        11 ~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~   84 (334)
T cd07855          11 ENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDN------IIAIRDILRPPGADFKDVY   84 (334)
T ss_pred             eeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCC------ccCHHHhccccCCCCceEE
Confidence            57999999999999999999999999997532   23456678999999999877      99999998743    4799


Q ss_pred             EEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          75 IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        75 lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      +||||++++|.+++....  .+++..++.++.|++.|                       |.|||+.+++|||+|+.|+.
T Consensus        85 lv~e~~~~~l~~~~~~~~--~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~dlkp~Nil  139 (334)
T cd07855          85 VVMDLMESDLHHIIHSDQ--PLTEEHIRYFLYQLLRG-----------------------LKYIHSANVIHRDLKPSNLL  139 (334)
T ss_pred             EEEehhhhhHHHHhccCC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEE
Confidence            999999889999987654  47888888888888887                       99999999999999999997


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       140 ~~------------------------------------------------------------------------------  141 (334)
T cd07855         140 VN------------------------------------------------------------------------------  141 (334)
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            76                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeec-CCCCCccceeeeeeeeEe
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~  306 (351)
                                       ..+.+||+|||++.....       ......|+..|+|||.+.+ ..++.++|+||+||++|+
T Consensus       142 -----------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~l~e  204 (334)
T cd07855         142 -----------------EDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLLSLPEYTTAIDMWSVGCIFAE  204 (334)
T ss_pred             -----------------CCCcEEecccccceeecccCcCCCcccccccccccccChHHhcCCcccccccchHHHHHHHHH
Confidence                             235689999998864321       1123467889999998865 457899999999999999


Q ss_pred             eccccccccccCC
Q psy2006         307 LYLGITLMARKTK  319 (351)
Q Consensus       307 l~tG~~pf~~~~~  319 (351)
                      +++|..||.+.+.
T Consensus       205 l~~g~~pf~~~~~  217 (334)
T cd07855         205 MLGRRQLFPGKNY  217 (334)
T ss_pred             HHcCCCccCCCCh
Confidence            9999999977653

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.95  E-value=6.2e-28  Score=220.11  Aligned_cols=198  Identities=24%  Similarity=0.369  Sum_probs=164.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhh--hhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK--YREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~--~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      .++||.|+||+||+|++..+++.||+|.+.....  ......+|+..++.+. |++      |+++++++..+++.++||
T Consensus         4 ~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~------i~~~~~~~~~~~~~~lv~   77 (283)
T cd07830           4 IKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPN------IVKLKEVFRENDELYFVF   77 (283)
T ss_pred             heeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCC------chhHHHHhhcCCcEEEEE
Confidence            3689999999999999988899999999875422  2223456899999987 777      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||++++|.+.+.......+++..+..++.|++.+                       |.|||+.+++|+|+++.|+.+.+
T Consensus        78 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------l~~Lh~~~i~H~dl~~~ni~i~~  134 (283)
T cd07830          78 EYMEGNLYQLMKDRKGKPFSESVIRSIIYQILQG-----------------------LAHIHKHGFFHRDLKPENLLVSG  134 (283)
T ss_pred             ecCCCCHHHHHHhcccccCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCChhhEEEcC
Confidence            9999999999987654467888888888888888                       99999999999999999998872


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (283)
T cd07830         135 --------------------------------------------------------------------------------  134 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                     ...++|+|||.+.....  ......++..|+|||.+.+ ..++.++|+||||++++++++|.+||
T Consensus       135 ---------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Di~s~G~~l~el~~g~~~~  199 (283)
T cd07830         135 ---------------PEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCIMAELYTLRPLF  199 (283)
T ss_pred             ---------------CCCEEEeecccceeccCCCCcCCCCCcccccCceeeecCcCcCCccchhhHHHHHHHHHhCCCcc
Confidence                           35689999998865432  2234567889999998865 45689999999999999999999999


Q ss_pred             cccCCCce
Q psy2006         315 ARKTKTKY  322 (351)
Q Consensus       315 ~~~~~~~~  322 (351)
                      ...+..+.
T Consensus       200 ~~~~~~~~  207 (283)
T cd07830         200 PGSSEIDQ  207 (283)
T ss_pred             CCCChHHH
Confidence            87765443

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.95  E-value=8.2e-28  Score=218.08  Aligned_cols=198  Identities=14%  Similarity=0.150  Sum_probs=153.2

Q ss_pred             ccccCcccceEEEEEEeec--CcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEV--DSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~--~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|.....  ...+++|.+...  ....+.+.+|+.+++.++|+|      |+++++.+....+.|+||
T Consensus         1 ~~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~------iv~~~~~~~~~~~~~lv~   74 (268)
T cd05086           1 QEIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPN------ILQCLGQCVEAIPYLLVF   74 (268)
T ss_pred             CcCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcc------hhheEEEecCCCccEEEE
Confidence            4799999999999986433  345667776543  234567889999999999888      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCC--CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          78 EIL-GLSVFDFLKENNY--LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~--~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||+ +++|.+++.+...  ...++..++.++.|++.|                       |+|||+++++|+|+|+.|+.
T Consensus        75 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~a-----------------------l~~lH~~~i~H~dikp~nil  131 (268)
T cd05086          75 EYCELGDLKSYLSQEQWHRRNSQLLLLQRMACEIAAG-----------------------VTHMHKHNFLHSDLALRNCF  131 (268)
T ss_pred             ecCCCCcHHHHHHhhhcccccccHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCccceEE
Confidence            999 8999999986531  235566667777777777                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       132 ~~------------------------------------------------------------------------------  133 (268)
T cd05086         132 LT------------------------------------------------------------------------------  133 (268)
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            76                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeec-------CCCCCccceeeeee
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILE-------LGWAQPCDVWSIGC  302 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~-------~~~~~~~DiwslG~  302 (351)
                                       ....++|+|||++.....     ......+++.|+|||++..       ..++.++|+|||||
T Consensus       134 -----------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~  196 (268)
T cd05086         134 -----------------SDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGLITAEQTKPSNVWALGV  196 (268)
T ss_pred             -----------------CCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCccccCCCCCcchhHHHHH
Confidence                             134689999998753211     1223567889999998753       23577899999999


Q ss_pred             eeEeecc-ccccccccCCCcee
Q psy2006         303 IIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       303 ~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      ++|++++ |..||...+..+.+
T Consensus       197 ~l~el~~~~~~p~~~~~~~~~~  218 (268)
T cd05086         197 TLWELFENAAQPYSHLSDREVL  218 (268)
T ss_pred             HHHHHHhCCCCCCCCCCHHHHH
Confidence            9999986 67788776655443

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.95  E-value=3.8e-28  Score=218.13  Aligned_cols=199  Identities=20%  Similarity=0.265  Sum_probs=166.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||.|+||.||+|.+..+++.||+|.+....   ...+.+.+|+++++.++|+|      |+++++.+...++.++|+|
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~------i~~~~~~~~~~~~~~lv~e   79 (257)
T cd08225           6 KKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPN------IVTFFASFQENGRLFIVME   79 (257)
T ss_pred             EEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCC------hhhhhheeccCCeEEEEEe
Confidence            57999999999999999999999999997531   23456778999999999877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++.+.....+++..+..++.|++.+                       +.|||+.+++|+|+++.|+.+.+
T Consensus        80 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------l~~lh~~~i~H~dl~~~nil~~~  136 (257)
T cd08225          80 YCDGGDLMKRINRQRGVLFSEDQILSWFVQISLG-----------------------LKHIHDRKILHRDIKSQNIFLSK  136 (257)
T ss_pred             cCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccccCCHHHEEEcC
Confidence            99 8899999987655567888888888888888                       99999999999999999998862


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (257)
T cd08225         137 --------------------------------------------------------------------------------  136 (257)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ....++++|||.+......   .....|++.|+|||.+.+..++.++|+||+|++++++++|..||
T Consensus       137 --------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~Dv~slG~il~~l~~g~~p~  202 (257)
T cd08225         137 --------------NGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYNNKTDIWSLGCVLYELCTLKHPF  202 (257)
T ss_pred             --------------CCCeEEecccccchhccCCcccccccCCCccccCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                          1134689999987653221   12346788999999998888899999999999999999999999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      ...+..+..
T Consensus       203 ~~~~~~~~~  211 (257)
T cd08225         203 EGNNLHQLV  211 (257)
T ss_pred             CCccHHHHH
Confidence            876544443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.95  E-value=1.3e-27  Score=218.62  Aligned_cols=194  Identities=21%  Similarity=0.288  Sum_probs=164.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      +.||.|+||.||+|.+..+++.||+|++.......+.+.+|+.+++.+.|+|      |+++++.|...+..|+|+||+ 
T Consensus        25 ~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~lv~e~~~   98 (286)
T cd06614          25 EKIGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPN------IVDYYDSYLVGDELWVVMEYMD   98 (286)
T ss_pred             HhccCCCCeEEEEEEEccCCcEEEEEEEecCchhHHHHHHHHHHHHHCCCCC------eeEEEEEEEECCEEEEEEeccC
Confidence            5699999999999999888999999999865444567788999999999877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..++...+..++.|++.+                       |.+||+.|++|+|+++.|+.+.    
T Consensus        99 ~~~L~~~l~~~~-~~l~~~~~~~i~~~i~~~-----------------------L~~lH~~gi~H~dl~p~ni~i~----  150 (286)
T cd06614          99 GGSLTDIITQNF-VRMNEPQIAYVCREVLQG-----------------------LEYLHSQNVIHRDIKSDNILLS----  150 (286)
T ss_pred             CCcHHHHHHHhc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeeCCCChhhEEEc----
Confidence            799999998865 357777788888888877                       9999999999999999999876    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (286)
T cd06614         151 --------------------------------------------------------------------------------  150 (286)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                 ..+.++|+|||.+.....   ......+++.|++||.+.+..++.++|+|||||++|++++|..||...
T Consensus       151 -----------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~Dv~slGvil~~l~~g~~p~~~~  219 (286)
T cd06614         151 -----------KDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWSLGIMCIEMAEGEPPYLRE  219 (286)
T ss_pred             -----------CCCCEEECccchhhhhccchhhhccccCCcccCCHhHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCC
Confidence                       234689999998754222   123345778999999998888899999999999999999999999876


Q ss_pred             CCC
Q psy2006         318 TKT  320 (351)
Q Consensus       318 ~~~  320 (351)
                      +..
T Consensus       220 ~~~  222 (286)
T cd06614         220 PPL  222 (286)
T ss_pred             CHH
Confidence            543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.95  E-value=9e-28  Score=224.91  Aligned_cols=198  Identities=17%  Similarity=0.274  Sum_probs=154.7

Q ss_pred             ccccCcccceEEEEEEeec-------CcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYEV-------DSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~-------~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      ++||+|+||.||+|.+...       +..||+|++...  ....+.+.+|+++++++ .|+|      |+++++++...+
T Consensus        18 ~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~------iv~~~~~~~~~~   91 (334)
T cd05100          18 KPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKN------IINLLGACTQDG   91 (334)
T ss_pred             ceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCC------eeeeeEEEccCC
Confidence            5799999999999986532       237999998753  23345678899999999 6777      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhh
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD  136 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~  136 (351)
                      .+++||||+ +++|.+++.....              ..++...+..++.|++.|                       |.
T Consensus        92 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~a-----------------------l~  148 (334)
T cd05100          92 PLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARG-----------------------ME  148 (334)
T ss_pred             ceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHH-----------------------HH
Confidence            999999999 8899999986431              123344445555555555                       99


Q ss_pred             ccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhh
Q psy2006         137 YNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEAL  216 (351)
Q Consensus       137 ~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l  216 (351)
                      |||++|++|||+|+.|+.+.+                                                           
T Consensus       149 ~LH~~givH~dlkp~Nill~~-----------------------------------------------------------  169 (334)
T cd05100         149 YLASQKCIHRDLAARNVLVTE-----------------------------------------------------------  169 (334)
T ss_pred             HHHHCCeeccccccceEEEcC-----------------------------------------------------------
Confidence            999999999999999998862                                                           


Q ss_pred             cCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCC
Q psy2006         217 RHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGW  291 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~  291 (351)
                                                          ...++|+|||.+......     .....++..|+|||.+.+..+
T Consensus       170 ------------------------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  213 (334)
T cd05100         170 ------------------------------------DNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWMAPEALFDRVY  213 (334)
T ss_pred             ------------------------------------CCcEEECCcccceecccccccccccCCCcCceEcCHHHhccCCc
Confidence                                                346899999988643221     122334567999999988889


Q ss_pred             CCccceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         292 AQPCDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       292 ~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +.++|+|||||++|+|++ |..||.+.+..+.+
T Consensus       214 ~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~  246 (334)
T cd05100         214 THQSDVWSFGVLLWEIFTLGGSPYPGIPVEELF  246 (334)
T ss_pred             CchhhhHHHHHHHHHHHhcCCCCCCCCCHHHHH
Confidence            999999999999999998 89999877655554

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.95  E-value=1.2e-27  Score=215.70  Aligned_cols=191  Identities=22%  Similarity=0.302  Sum_probs=164.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||.|+||.||+|.+..+++.||+|++....  .....+.+|+.+++.++|++      |+++++.+...+..++||||
T Consensus         7 ~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           7 KVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPY------VVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             eeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCC------eeeEEEEEccCCeEEEEEEe
Confidence            67999999999999999999999999997643  34567889999999999777      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeEEee
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIRLID  157 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~l~D  157 (351)
                      + +++|.+++....  .+++..+..++.|++.+                       +.|+|+ .+++|+|++++|+.+. 
T Consensus        81 ~~~~~L~~~l~~~~--~l~~~~~~~~~~~l~~~-----------------------l~~lh~~~~~~H~~l~~~ni~~~-  134 (264)
T cd06623          81 MDGGSLADLLKKVG--KIPEPVLAYIARQILKG-----------------------LDYLHTKRHIIHRDIKPSNLLIN-  134 (264)
T ss_pred             cCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHhccCCCccCCCCHHHEEEC-
Confidence            9 799999998763  57788888888888887                       999999 9999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (264)
T cd06623         135 --------------------------------------------------------------------------------  134 (264)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecccc---ccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH---STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ....++|+|||.+.......   ....++..|+|||.+....++.++|+||||+++|++++|..||
T Consensus       135 --------------~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~tg~~p~  200 (264)
T cd06623         135 --------------SKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAADIWSLGLTLLECALGKFPF  200 (264)
T ss_pred             --------------CCCCEEEccCccceecccCCCcccceeecccccCHhhhCCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                          23568999999886533222   2456788999999998888899999999999999999999999


Q ss_pred             cccC
Q psy2006         315 ARKT  318 (351)
Q Consensus       315 ~~~~  318 (351)
                      ....
T Consensus       201 ~~~~  204 (264)
T cd06623         201 LPPG  204 (264)
T ss_pred             cccc
Confidence            7775

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.95  E-value=1e-27  Score=218.94  Aligned_cols=192  Identities=19%  Similarity=0.211  Sum_probs=154.0

Q ss_pred             CccccCcccceEEEEE----EeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeE
Q psy2006           1 MCSLNCVASNHVCTNV----VYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~----~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~   73 (351)
                      ++.||+|+||+||+|.    +..+++.||+|.+... ....+.+.+|+++++.+.|+|      |+++++++...  ..+
T Consensus         9 ~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~~   82 (284)
T cd05081           9 IQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDN------IVKYKGVCYSAGRRNL   82 (284)
T ss_pred             eeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCC------eeEEEEEEccCCCCce
Confidence            3679999999999997    3457899999999753 233456789999999999888      99999987543  379


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      |+||||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|+|+|+.|
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~-~~l~~~~~~~~~~~l~~a-----------------------L~~LH~~~i~H~dlkp~n  138 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQKHR-ERLDHRKLLLYASQICKG-----------------------MEYLGSKRYVHRDLATRN  138 (284)
T ss_pred             EEEEEecCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceeccCCHhh
Confidence            9999999 899999997654 247777788888888877                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       139 ili~----------------------------------------------------------------------------  142 (284)
T cd05081         139 ILVE----------------------------------------------------------------------------  142 (284)
T ss_pred             EEEC----------------------------------------------------------------------------
Confidence            9876                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecccc------ccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                         ....++|+|||++.......      ....++..|+|||.+.+..++.++|+||+||++++
T Consensus       143 -------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~e  203 (284)
T cd05081         143 -------------------SENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESKFSVASDVWSFGVVLYE  203 (284)
T ss_pred             -------------------CCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCCcChHHHHHHHHHHHHH
Confidence                               13468999999886532211      11223456999999988888999999999999999


Q ss_pred             ecccccccccc
Q psy2006         307 LYLGITLMARK  317 (351)
Q Consensus       307 l~tG~~pf~~~  317 (351)
                      +++|..++...
T Consensus       204 l~~~~~~~~~~  214 (284)
T cd05081         204 LFTYSDKSCSP  214 (284)
T ss_pred             HhhcCCcCCCc
Confidence            99988776443

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=1.9e-27  Score=216.69  Aligned_cols=193  Identities=20%  Similarity=0.227  Sum_probs=158.0

Q ss_pred             CccccCcccceEEEEEEe----ecCcEEEEEEecchhh--hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee--CCe
Q psy2006           1 MCSLNCVASNHVCTNVVY----EVDSVVALKIIKNVEK--YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY--HGH   72 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~----~~~~~vAiK~~~~~~~--~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~--~~~   72 (351)
                      ++.||.|+||+||+|+..    .+++.||+|++.....  ..+.+.+|+++++.+.|+|      |+++++++..  ..+
T Consensus         9 ~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~------i~~~~~~~~~~~~~~   82 (284)
T cd05038           9 IKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHEN------IVKYKGVCEKPGGRS   82 (284)
T ss_pred             heeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCC------hheEEeeeecCCCCc
Confidence            367999999999999854    3588999999986543  3567889999999999887      9999999887  458


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      .++||||+ +++|.+++..... .+++..+..++.|++.+                       |.|||+.|++|+|+++.
T Consensus        83 ~~lv~e~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~l~~a-----------------------L~~lH~~~i~H~dl~p~  138 (284)
T cd05038          83 LRLIMEYLPSGSLRDYLQRHRD-QINLKRLLLFSSQICKG-----------------------MDYLGSQRYIHRDLAAR  138 (284)
T ss_pred             eEEEEecCCCCCHHHHHHhCcc-ccCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHH
Confidence            99999999 8899999987642 47777777777777777                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.                                                                           
T Consensus       139 nil~~---------------------------------------------------------------------------  143 (284)
T cd05038         139 NILVE---------------------------------------------------------------------------  143 (284)
T ss_pred             hEEEc---------------------------------------------------------------------------
Confidence            99876                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceecccc------ccccccceeeCceeeecCCCCCccceeeeeeeeE
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~  305 (351)
                                          ....++|+|||.+.......      ....++..|++||.+.+..++.++|+|||||+++
T Consensus       144 --------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~  203 (284)
T cd05038         144 --------------------SEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKFSSASDVWSFGVTLY  203 (284)
T ss_pred             --------------------CCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCCCcccchHHHhhhhh
Confidence                                13568999999886543211      1123345689999998888899999999999999


Q ss_pred             eeccccccccccC
Q psy2006         306 ELYLGITLMARKT  318 (351)
Q Consensus       306 ~l~tG~~pf~~~~  318 (351)
                      ++++|..||....
T Consensus       204 el~tg~~p~~~~~  216 (284)
T cd05038         204 ELFTYGDPSQSPP  216 (284)
T ss_pred             eeeccCCCccccc
Confidence            9999999987644

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.95  E-value=3.3e-28  Score=228.68  Aligned_cols=192  Identities=24%  Similarity=0.401  Sum_probs=157.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC----------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH----------   70 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~----------   70 (351)
                      ++||.|+||+||+|.+..+++.||+|++.... ...+.+.+|+++++.++|+|      |+++++.+...          
T Consensus        11 ~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~------i~~~~~~~~~~~~~~~~~~~~   84 (342)
T cd07854          11 RPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDN------IVKVYEVLGPSGSDLTEDVGS   84 (342)
T ss_pred             EEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCc------chhhHhhhccccccccccccc
Confidence            67999999999999999999999999996543 33456788999999999887      99999877654          


Q ss_pred             ----CeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccc
Q psy2006          71 ----GHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVR  146 (351)
Q Consensus        71 ----~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~  146 (351)
                          .+.|+||||++++|.+++...   .+++..++.++.|++.|                       |+|||+.|++||
T Consensus        85 ~~~~~~~~lv~e~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~a-----------------------L~~LH~~givH~  138 (342)
T cd07854          85 LTELNSVYIVQEYMETDLANVLEQG---PLSEEHARLFMYQLLRG-----------------------LKYIHSANVLHR  138 (342)
T ss_pred             ccccceEEEEeecccccHHHHHHcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccC
Confidence                368999999988999888653   47888888888888888                       999999999999


Q ss_pred             ccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         147 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      |+|++|+.+..                                                                     
T Consensus       139 dikp~Nili~~---------------------------------------------------------------------  149 (342)
T cd07854         139 DLKPANVFINT---------------------------------------------------------------------  149 (342)
T ss_pred             CCCHHHEEEcC---------------------------------------------------------------------
Confidence            99999988751                                                                     


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeec-CCCCCccceee
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILE-LGWAQPCDVWS  299 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~-~~~~~~~Diws  299 (351)
                                               ....++++|||.+......      .....++..|+|||.+.+ ..++.++|+||
T Consensus       150 -------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwS  204 (342)
T cd07854         150 -------------------------EDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWA  204 (342)
T ss_pred             -------------------------CCceEEECCcccceecCCccccccccccccccccccCHHHHhCccccCchhhHHH
Confidence                                     1245789999987643211      122356788999998755 56788999999


Q ss_pred             eeeeeEeeccccccccccCC
Q psy2006         300 IGCIIFELYLGITLMARKTK  319 (351)
Q Consensus       300 lG~~l~~l~tG~~pf~~~~~  319 (351)
                      |||++|++++|..||...+.
T Consensus       205 lGvil~el~~g~~pf~~~~~  224 (342)
T cd07854         205 AGCIFAEMLTGKPLFAGAHE  224 (342)
T ss_pred             HHHHHHHHHhCCCCCCCCCH
Confidence            99999999999999976543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.95  E-value=5.3e-28  Score=221.47  Aligned_cols=219  Identities=17%  Similarity=0.217  Sum_probs=159.0

Q ss_pred             CccccCcccceEEEEEEee-----cCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           1 MCSLNCVASNHVCTNVVYE-----VDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +++||.|+||.||+|.+..     +++.||+|++....  .....+.+|+.+++.+.|++      |+++++++....+.
T Consensus        10 ~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~------iv~~~~~~~~~~~~   83 (288)
T cd05050          10 VRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPN------IVKLLGVCAVGKPM   83 (288)
T ss_pred             cccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCc------hheEEEEEcCCCcc
Confidence            3679999999999999753     67899999997532  23456788999999999887      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      |+||||+ +++|.+++......  ..........+.. ....+...+++..+..++.|++.||.|+|+++++|+|+++.|
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~n  160 (288)
T cd05050          84 CLLFEYMAYGDLNEFLRHRSPR--AQCSLSHSTSSAR-KCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRN  160 (288)
T ss_pred             EEEEecCCCCCHHHHHHHcCcc--ccccccccccccc-cccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhh
Confidence            9999999 88999999764310  0000000000000 000111234455555556666666999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.+                                                                           
T Consensus       161 il~~~---------------------------------------------------------------------------  165 (288)
T cd05050         161 CLVGE---------------------------------------------------------------------------  165 (288)
T ss_pred             eEecC---------------------------------------------------------------------------
Confidence            98752                                                                           


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                          ...++|+|||.+......     .....++..|+|||.+.+..++.++|+|||||++|+|
T Consensus       166 --------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el  225 (288)
T cd05050         166 --------------------NMVVKIADFGLSRNIYSADYYKASENDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEI  225 (288)
T ss_pred             --------------------CCceEECccccceecccCccccccCCCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHH
Confidence                                346889999987642211     1223345679999999888899999999999999999


Q ss_pred             cc-ccccccccCCCcee
Q psy2006         308 YL-GITLMARKTKTKYF  323 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~~  323 (351)
                      ++ |..||.+.+..+..
T Consensus       226 ~~~~~~p~~~~~~~~~~  242 (288)
T cd05050         226 FSYGMQPYYGMAHEEVI  242 (288)
T ss_pred             HhCCCCCCCCCCHHHHH
Confidence            97 88899776655543

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.95  E-value=6.6e-28  Score=221.75  Aligned_cols=192  Identities=19%  Similarity=0.304  Sum_probs=161.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      .+||+|+||.||++.+..+++.||+|++... ......+.+|+.+++.++|+|      |+++++.|..+++.|+||||+
T Consensus        26 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e~~   99 (292)
T cd06657          26 IKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN------VVEMYNSYLVGDELWVVMEFL   99 (292)
T ss_pred             HHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcc------hhheeeEEEeCCEEEEEEecC
Confidence            3699999999999999899999999998642 233456788999999999877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++...   .+++..+..++.|++.+                       +.|||+.|++|+|+++.|+.+.   
T Consensus       100 ~~~~L~~~~~~~---~~~~~~~~~~~~ql~~~-----------------------l~~lH~~givH~dl~p~Nilv~---  150 (292)
T cd06657         100 EGGALTDIVTHT---RMNEEQIAAVCLAVLKA-----------------------LSVLHAQGVIHRDIKSDSILLT---  150 (292)
T ss_pred             CCCcHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEEEC---
Confidence             88999877543   46788888888888887                       9999999999999999999876   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (292)
T cd06657         151 --------------------------------------------------------------------------------  150 (292)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                  ....++|+|||++.....   ......|++.|++||.+.+..++.++|+||+|+++|++++|..||.+
T Consensus       151 ------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slGvil~el~tg~~p~~~  218 (292)
T cd06657         151 ------------HDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFN  218 (292)
T ss_pred             ------------CCCCEEEcccccceecccccccccccccCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                        124589999998754322   12335678899999998888889999999999999999999999987


Q ss_pred             cCCC
Q psy2006         317 KTKT  320 (351)
Q Consensus       317 ~~~~  320 (351)
                      .+..
T Consensus       219 ~~~~  222 (292)
T cd06657         219 EPPL  222 (292)
T ss_pred             CCHH
Confidence            6544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>KOG1095|consensus

Probab=99.95  E-value=3.3e-28  Score=246.59  Aligned_cols=204  Identities=20%  Similarity=0.271  Sum_probs=164.2

Q ss_pred             ccccCcccceEEEEEEeec-C----cEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEV-D----SVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~-~----~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||.|+||.||.|.-... +    -.||+|.+...  ......+.+|..+|+.+.|+|      |++++++.-..+-.+
T Consensus       698 ~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpN------iv~liGv~l~~~~~~  771 (1025)
T KOG1095|consen  698 RVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPN------IVSLIGVCLDSGPPL  771 (1025)
T ss_pred             eeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcc------eeeEEEeecCCCCcE
Confidence            5699999999999986542 2    34999999764  455667899999999999988      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |++||| ||||..+|+..+...+..                  .-++-.++..+..+++.|..||++++++|||+..-|+
T Consensus       772 i~leyM~gGDL~sflr~~r~~~~~~------------------~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNC  833 (1025)
T KOG1095|consen  772 ILLEYMEGGDLLSFLRESRPAPFQP------------------SNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNC  833 (1025)
T ss_pred             EEehhcccCcHHHHHHhcccccCCC------------------CCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhhe
Confidence            999999 999999999884332221                  1233444444555555559999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      +|.                                                                             
T Consensus       834 LL~-----------------------------------------------------------------------------  836 (1025)
T KOG1095|consen  834 LLD-----------------------------------------------------------------------------  836 (1025)
T ss_pred             eec-----------------------------------------------------------------------------
Confidence            887                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcce-ecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATF-DDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~-~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                        .+..|||+|||+++- ....-    ....-...|||||.+....|+.++||||||+++||++
T Consensus       837 ------------------~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d~iFtskSDvWsFGVllWEif  898 (1025)
T KOG1095|consen  837 ------------------ERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKDGIFTSKSDVWSFGVLLWEIF  898 (1025)
T ss_pred             ------------------ccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhhcccccccchhhhHHHHHHHH
Confidence                              346799999999983 22111    1222346899999999999999999999999999999


Q ss_pred             c-ccccccccCCCceee
Q psy2006         309 L-GITLMARKTKTKYFY  324 (351)
Q Consensus       309 t-G~~pf~~~~~~~~~~  324 (351)
                      | |..||...+..+++.
T Consensus       899 slG~~PY~~~~n~~v~~  915 (1025)
T KOG1095|consen  899 SLGATPYPSRSNFEVLL  915 (1025)
T ss_pred             hCCCCCCCCcchHHHHH
Confidence            7 999999999998864

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.95  E-value=1.2e-27  Score=216.95  Aligned_cols=196  Identities=20%  Similarity=0.256  Sum_probs=158.7

Q ss_pred             ccccCcccceEEEEEEeec---CcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEV---DSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~---~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||.|+||.||+|.+...   ...||+|.+...  ....+.+.+|+.+++.+.|+|      |+++++++.. ...++|
T Consensus        12 ~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~------i~~~~~~~~~-~~~~lv   84 (270)
T cd05056          12 RCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPH------IVKLIGVITE-NPVWIV   84 (270)
T ss_pred             eeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCc------hhceeEEEcC-CCcEEE
Confidence            5799999999999997543   457999998753  234567888999999999877      9999998875 567899


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.... ..+++..+..++.|++.+                       |+|+|+.+++|+|+++.|+.+
T Consensus        85 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~-----------------------l~~lH~~~~~H~dl~p~nili  140 (270)
T cd05056          85 MELAPLGELRSYLQVNK-YSLDLASLILYSYQLSTA-----------------------LAYLESKRFVHRDIAARNVLV  140 (270)
T ss_pred             EEcCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccccChheEEE
Confidence            9999 899999997754 257788888888888887                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       141 ~-------------------------------------------------------------------------------  141 (270)
T cd05056         141 S-------------------------------------------------------------------------------  141 (270)
T ss_pred             e-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-c
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-G  310 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G  310 (351)
                                      ....++++|||++......    .....+++.|+|||.+....++.++|+|||||+++++++ |
T Consensus       142 ----------------~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g  205 (270)
T cd05056         142 ----------------SPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMLG  205 (270)
T ss_pred             ----------------cCCCeEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhhhHHHHHHHHHHHHcC
Confidence                            1346899999987653221    112234467999999988888999999999999999885 9


Q ss_pred             cccccccCCCcee
Q psy2006         311 ITLMARKTKTKYF  323 (351)
Q Consensus       311 ~~pf~~~~~~~~~  323 (351)
                      ..||.+.+..+..
T Consensus       206 ~~pf~~~~~~~~~  218 (270)
T cd05056         206 VKPFQGVKNNDVI  218 (270)
T ss_pred             CCCCCCCCHHHHH
Confidence            9999887765544

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.95  E-value=5.8e-28  Score=227.02  Aligned_cols=190  Identities=26%  Similarity=0.482  Sum_probs=157.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~   72 (351)
                      +.||.|+||.||+|++..+++.||+|++...   ......+.+|+++++.+.|+|      |++++++|....      +
T Consensus        21 ~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~n------iv~~~~~~~~~~~~~~~~~   94 (342)
T cd07879          21 KQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHEN------VIGLLDVFTSAVSGDEFQD   94 (342)
T ss_pred             EEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCC------ccchhheecccccCCCCce
Confidence            5799999999999999889999999999753   222345778999999999888      999999997653      5


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      .|+|+||+..+|.+++.    ..+++..+..++.|++.|                       |.|||+.+++|||++++|
T Consensus        95 ~~lv~e~~~~~l~~~~~----~~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~i~H~dlkp~N  147 (342)
T cd07879          95 FYLVMPYMQTDLQKIMG----HPLSEDKVQYLVYQMLCG-----------------------LKYIHSAGIIHRDLKPGN  147 (342)
T ss_pred             EEEEecccccCHHHHHc----CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHH
Confidence            79999999878877652    246777777777777777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       148 Ill~----------------------------------------------------------------------------  151 (342)
T cd07879         148 LAVN----------------------------------------------------------------------------  151 (342)
T ss_pred             EEEC----------------------------------------------------------------------------
Confidence            9876                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                         ..+.++|+|||++...........+++.|+|||.+.+ ..++.++|+||+||+++++++|.
T Consensus       152 -------------------~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slGvil~el~~g~  212 (342)
T cd07879         152 -------------------EDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMAEMLTGK  212 (342)
T ss_pred             -------------------CCCCEEEeeCCCCcCCCCCCCCceeeecccChhhhcCccccCchHHHHHHHHHHHHHHhCC
Confidence                               2356899999998765444445677889999999876 45788999999999999999999


Q ss_pred             ccccccCC
Q psy2006         312 TLMARKTK  319 (351)
Q Consensus       312 ~pf~~~~~  319 (351)
                      .||.+.+.
T Consensus       213 ~pf~~~~~  220 (342)
T cd07879         213 TLFKGKDY  220 (342)
T ss_pred             CCCCCCCH
Confidence            99987653

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.95  E-value=1.7e-27  Score=220.64  Aligned_cols=194  Identities=21%  Similarity=0.201  Sum_probs=160.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||.|+||.||+|+++.+++.+|+|.+...    ......+.+|+++++.++|++      ++++++++......++||
T Consensus        21 ~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~   94 (308)
T cd06634          21 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN------TIQYRGCYLREHTAWLVM   94 (308)
T ss_pred             HheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCC------cccEEEEEEcCCeeEEEE
Confidence            5799999999999999989999999998632    223345678999999998877      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||+.+++.+.+.... ..+++..+..++.|++.+                       +.|||+.+++|+|+++.|+.+.+
T Consensus        95 e~~~~~l~~~~~~~~-~~l~~~~~~~~~~~l~~~-----------------------l~~LH~~~i~H~dl~p~nil~~~  150 (308)
T cd06634          95 EYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQG-----------------------LAYLHSHNMIHRDVKAGNILLSE  150 (308)
T ss_pred             EccCCCHHHHHHHcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCHHhEEECC
Confidence            999889988876554 357777788888888877                       99999999999999999998762


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (308)
T cd06634         151 --------------------------------------------------------------------------------  150 (308)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec---CCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                     ...++|+|||++..... .....+++.|+|||.+.+   ..++.++|+|||||++|++++|..||
T Consensus       151 ---------------~~~~kl~dfg~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~  214 (308)
T cd06634         151 ---------------PGLVKLGDFGSASIMAP-ANXFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL  214 (308)
T ss_pred             ---------------CCcEEECCcccceeecC-cccccCCccccCHHHHhhcccCCCCcccchHHHHHHHHHHHcCCCCC
Confidence                           34689999998765332 234567889999998753   45688999999999999999999999


Q ss_pred             cccCCCc
Q psy2006         315 ARKTKTK  321 (351)
Q Consensus       315 ~~~~~~~  321 (351)
                      ...+..+
T Consensus       215 ~~~~~~~  221 (308)
T cd06634         215 FNMNAMS  221 (308)
T ss_pred             ccccHHH
Confidence            7765443

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.95  E-value=1.7e-27  Score=214.45  Aligned_cols=197  Identities=19%  Similarity=0.258  Sum_probs=163.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~~l   75 (351)
                      ++.||.|+||.||+|.+..+++.||+|++...   ....+.+..|+++++.++|+|      |+++++.+...  ...++
T Consensus         5 ~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~~~   78 (265)
T cd08217           5 LETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPN------IVRYYDRIIDRSNQTLYI   78 (265)
T ss_pred             eeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCc------cceeeeeeecCCCCEEEE
Confidence            35799999999999999999999999999643   234456778999999999887      99999988643  47899


Q ss_pred             EEecc-CCCHHHHHHhcC--CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccc-----cccccccc
Q psy2006          76 AFEIL-GLSVFDFLKENN--YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN-----KKKREVRR  147 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~--~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH-----~~~i~h~d  147 (351)
                      +|||+ +++|.+++....  ...+++..+..++.|++.+                       |.++|     +.+++|+|
T Consensus        79 ~~e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~-----------------------l~~lH~~~~~~~~i~h~d  135 (265)
T cd08217          79 VMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLA-----------------------LYECHNRSDPGNTVLHRD  135 (265)
T ss_pred             EehhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHH-----------------------HHHHhcCccccCcceecC
Confidence            99999 889999997642  2356777777777777777                       99999     89999999


Q ss_pred             cCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         148 VRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       148 ~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      ++++|+.+.+                                                                      
T Consensus       136 l~p~nili~~----------------------------------------------------------------------  145 (265)
T cd08217         136 LKPANIFLDA----------------------------------------------------------------------  145 (265)
T ss_pred             CCHHHEEEec----------------------------------------------------------------------
Confidence            9999998872                                                                      


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecCCCCCccceeeeeeee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCII  304 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l  304 (351)
                                               ...++|+|||++......   .....+++.|+|||.+.+..++.++|+||||+++
T Consensus       146 -------------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Dv~slG~il  200 (265)
T cd08217         146 -------------------------NNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLI  200 (265)
T ss_pred             -------------------------CCCEEEecccccccccCCcccccccccCCCccChhhhcCCCCCchhHHHHHHHHH
Confidence                                     356899999988753322   2345688999999999888889999999999999


Q ss_pred             EeeccccccccccCCCc
Q psy2006         305 FELYLGITLMARKTKTK  321 (351)
Q Consensus       305 ~~l~tG~~pf~~~~~~~  321 (351)
                      +++++|..||...+..+
T Consensus       201 ~~l~~g~~p~~~~~~~~  217 (265)
T cd08217         201 YELCALSPPFTARNQLQ  217 (265)
T ss_pred             HHHHHCCCcccCcCHHH
Confidence            99999999998776433

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>KOG0669|consensus

Probab=99.95  E-value=4.3e-30  Score=219.80  Aligned_cols=198  Identities=21%  Similarity=0.349  Sum_probs=163.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC---C----
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH---G----   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~---~----   71 (351)
                      .+||+|.||.||+|+.+.+++.||+|++...   ........+|+++|+.|.|.|      |+.+++.+...   .    
T Consensus        23 ~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHen------v~nliEic~tk~Tp~~r~r   96 (376)
T KOG0669|consen   23 AKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHEN------VVNLIEICRTKATPTNRDR   96 (376)
T ss_pred             HhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchh------HHHHHHHHhhccCCccccc
Confidence            4799999999999999999999999998642   345567899999999999888      66666655422   2    


Q ss_pred             -eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          72 -HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        72 -~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                       .+++||.+|..+|..++.... .+++...++.++.+++.|                       |.|+|+..++|||+|+
T Consensus        97 ~t~ylVf~~cehDLaGlLsn~~-vr~sls~Ikk~Mk~Lm~G-----------------------L~~iHr~kilHRDmKa  152 (376)
T KOG0669|consen   97 ATFYLVFDFCEHDLAGLLSNRK-VRFSLSEIKKVMKGLMNG-----------------------LYYIHRNKILHRDMKA  152 (376)
T ss_pred             ceeeeeHHHhhhhHHHHhcCcc-ccccHHHHHHHHHHHHHH-----------------------HHHHHHhhHHhhcccH
Confidence             699999999999999987654 467777777777777777                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .|+.+.                                                                          
T Consensus       153 aNvLIt--------------------------------------------------------------------------  158 (376)
T KOG0669|consen  153 ANVLIT--------------------------------------------------------------------------  158 (376)
T ss_pred             hhEEEc--------------------------------------------------------------------------
Confidence            999876                                                                          


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeec-CCCCCccceeeeee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGC  302 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~  302 (351)
                                           ..+.+||+|||+++....       .-+..+-|.+|++||.++| +.++++.|+|..||
T Consensus       159 ---------------------~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgC  217 (376)
T KOG0669|consen  159 ---------------------KDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGC  217 (376)
T ss_pred             ---------------------CCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHH
Confidence                                 246789999999854221       1122445899999999997 57899999999999


Q ss_pred             eeEeeccccccccccCCCceee
Q psy2006         303 IIFELYLGITLMARKTKTKYFY  324 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~~~~~~~  324 (351)
                      ++.+|.||.+.|.+.+....+.
T Consensus       218 imaeMwtrspimqgnteqqql~  239 (376)
T KOG0669|consen  218 IMAEMWTRSPIMQGNTEQQQLH  239 (376)
T ss_pred             HHHHHHccCccccCChHHHHHH
Confidence            9999999999999999888763

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.95  E-value=9.7e-28  Score=213.81  Aligned_cols=181  Identities=18%  Similarity=0.197  Sum_probs=149.0

Q ss_pred             cccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-CCCHH
Q psy2006           7 VASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-GLSVF   85 (351)
Q Consensus         7 G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-g~sL~   85 (351)
                      |.||.||++++..+++.||+|.+....    ...+|...+....|+|      |+++++++....+.|+||||+ +++|.
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~----~~~~~~~~~~~~~~~~------i~~~~~~~~~~~~~~lv~e~~~~~~L~   73 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS----EYSRERLTIIPHCVPN------MVCLHKYIVSEDSVFLVLQHAEGGKLW   73 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh----hhhhHHHHHHhcCCCc------eeehhhheecCCeEEEEEecCCCCCHH
Confidence            899999999999999999999998642    2233444444444455      999999999999999999999 89999


Q ss_pred             HHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC
Q psy2006          86 DFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD  165 (351)
Q Consensus        86 ~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~  165 (351)
                      +++.+..  .+++..+..++.|++.+                       |+|||++|++|||+|+.|+.+.         
T Consensus        74 ~~l~~~~--~l~~~~~~~~~~ql~~~-----------------------l~~lH~~~i~H~dlkp~Nil~~---------  119 (237)
T cd05576          74 SHISKFL--NIPEECVKRWAAEMVVA-----------------------LDALHREGIVCRDLNPNNILLD---------  119 (237)
T ss_pred             HHHHHhc--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccCCCHHHEEEc---------
Confidence            9987754  47888888888888888                       9999999999999999999876         


Q ss_pred             CCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchh
Q psy2006         166 EHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSS  245 (351)
Q Consensus       166 ~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (351)
                                                                                                      
T Consensus       120 --------------------------------------------------------------------------------  119 (237)
T cd05576         120 --------------------------------------------------------------------------------  119 (237)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         246 LVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       246 ~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                            ..+.++++|||.+...........++..|+|||.+.+.+++.++|+||+||+++++++|..||...
T Consensus       120 ------~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~~g~~~~~~~  185 (237)
T cd05576         120 ------DRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEETEACDWWSLGAILFELLTGKTLVECH  185 (237)
T ss_pred             ------CCCCEEEecccchhccccccccCCcCccccCCcccCCCCCCchhhHHHHHHHHHHHHHCcchhhcC
Confidence                  234688999997655433333445567899999998888899999999999999999999988654

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.95  E-value=2.8e-28  Score=229.25  Aligned_cols=193  Identities=24%  Similarity=0.484  Sum_probs=162.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCe------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH------   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~------   72 (351)
                      ++||.|+||+||+|.+..+++.||+|++...   ....+.+.+|+.+++.+.|+|      |+++++++...+.      
T Consensus        21 ~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~   94 (343)
T cd07851          21 SPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHEN------VIGLLDVFTPASSLEDFQD   94 (343)
T ss_pred             EEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCC------HHHHHHHhhcccccccccc
Confidence            5799999999999999889999999998642   223355678999999998877      9999998876654      


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      .++|+||++++|.+++...   .+++..+..++.|++.+                       |.|||+.|++|+|+++.|
T Consensus        95 ~~lv~e~~~~~L~~~~~~~---~l~~~~~~~~~~ql~~a-----------------------L~~LH~~gi~H~dlkp~N  148 (343)
T cd07851          95 VYLVTHLMGADLNNIVKCQ---KLSDDHIQFLVYQILRG-----------------------LKYIHSAGIIHRDLKPSN  148 (343)
T ss_pred             EEEEEecCCCCHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHH
Confidence            9999999999999998763   47888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.+                                                                           
T Consensus       149 ill~~---------------------------------------------------------------------------  153 (343)
T cd07851         149 IAVNE---------------------------------------------------------------------------  153 (343)
T ss_pred             eEECC---------------------------------------------------------------------------
Confidence            98862                                                                           


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                          ...++|+|||.+...........+++.|+|||.+.+ ..++.++|+||+||++|++++|.
T Consensus       154 --------------------~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DvwslGv~l~elltg~  213 (343)
T cd07851         154 --------------------DCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGK  213 (343)
T ss_pred             --------------------CCCEEEccccccccccccccCCcccccccCHHHHhCCCCCCchHhHHHHHHHHHHHHhCC
Confidence                                346899999998765544555678889999998865 36688999999999999999999


Q ss_pred             ccccccCCCc
Q psy2006         312 TLMARKTKTK  321 (351)
Q Consensus       312 ~pf~~~~~~~  321 (351)
                      .||.+.+..+
T Consensus       214 ~pf~~~~~~~  223 (343)
T cd07851         214 TLFPGSDHID  223 (343)
T ss_pred             CCCCCCChHH
Confidence            9998765443

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.94  E-value=2.1e-27  Score=217.68  Aligned_cols=190  Identities=22%  Similarity=0.298  Sum_probs=156.7

Q ss_pred             ccccCcccceEEEEEEe---ecCcEEEEEEecchh-----hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCe
Q psy2006           2 CSLNCVASNHVCTNVVY---EVDSVVALKIIKNVE-----KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~~-----~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~   72 (351)
                      +.||.|+||.||+|.+.   .+++.||+|++....     ...+...+|+++++.+. |++      |+.+++.|+.++.
T Consensus         6 ~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~------i~~~~~~~~~~~~   79 (290)
T cd05613           6 KVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPF------LVTLHYAFQTDTK   79 (290)
T ss_pred             eeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCC------hhceeeEeecCCe
Confidence            67999999999999975   378999999997532     23356778999999995 555      9999999999999


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      .|+||||+ +++|.+++....  ++++..+..++.|++.+                       |.|||+.|++|||+++.
T Consensus        80 ~~lv~e~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~a-----------------------l~~lH~~~i~H~dl~p~  134 (290)
T cd05613          80 LHLILDYINGGELFTHLSQRE--RFKEQEVQIYSGEIVLA-----------------------LEHLHKLGIIYRDIKLE  134 (290)
T ss_pred             EEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccCCCHH
Confidence            99999999 899999998764  57788888888888888                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.                                                                           
T Consensus       135 nil~~---------------------------------------------------------------------------  139 (290)
T cd05613         135 NILLD---------------------------------------------------------------------------  139 (290)
T ss_pred             HeEEC---------------------------------------------------------------------------
Confidence            99876                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecC--CCCCccceeeeeeeeE
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILEL--GWAQPCDVWSIGCIIF  305 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwslG~~l~  305 (351)
                                          ..+.++|+|||++.....    ......|+..|+|||.+.+.  .++.++|+||+|+++|
T Consensus       140 --------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~~l~  199 (290)
T cd05613         140 --------------------SNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDGGHDKAVDWWSMGVLMY  199 (290)
T ss_pred             --------------------CCCCEEEeeCccceecccccccccccccCCcccCChhhccCCCCCCCccccHHHHHHHHH
Confidence                                134689999998765322    12245678899999998753  4578899999999999


Q ss_pred             eecccccccccc
Q psy2006         306 ELYLGITLMARK  317 (351)
Q Consensus       306 ~l~tG~~pf~~~  317 (351)
                      ++++|..||...
T Consensus       200 ~ll~g~~p~~~~  211 (290)
T cd05613         200 ELLTGASPFTVD  211 (290)
T ss_pred             HHhcCCCCCCcC
Confidence            999999999743

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.94  E-value=3.2e-27  Score=210.63  Aligned_cols=193  Identities=25%  Similarity=0.306  Sum_probs=165.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh-hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK-YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~-~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||.|++|.||++.+..+++.|++|++..... ....+.+|+.+++.+.|++      |+++++.|..+...++++||+
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~l~~e~~   79 (253)
T cd05122           6 EKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPN------IVKYYGSYLKKDELWIVMEFC   79 (253)
T ss_pred             eeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCC------EeEEEEEEecCCeEEEEEecC
Confidence            679999999999999988999999999976432 4567889999999999777      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.... ..+++..+..++.|++.+                       +.+||+.|++|+|+++.|+.+.+  
T Consensus        80 ~~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~-----------------------l~~lh~~~i~h~dl~p~ni~i~~--  133 (253)
T cd05122          80 SGGSLKDLLKSTN-QTLTESQIAYVCKELLKG-----------------------LEYLHSNGIIHRDIKAANILLTS--  133 (253)
T ss_pred             CCCcHHHHHhhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHhhcCCEecCCCCHHHEEEcc--
Confidence             699999987763 357777777888877777                       99999999999999999998862  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (253)
T cd05122         134 --------------------------------------------------------------------------------  133 (253)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceeccc--cccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                   .+.++|+|||.+......  .....++..|++||.+.+...+.++|+||+|++++++++|..||...
T Consensus       134 -------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~  200 (253)
T cd05122         134 -------------DGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGITAIELAEGKPPYSEL  200 (253)
T ss_pred             -------------CCeEEEeeccccccccccccccceecCCcccCHHHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence                         356899999988764433  24567788999999998888899999999999999999999999876


Q ss_pred             CC
Q psy2006         318 TK  319 (351)
Q Consensus       318 ~~  319 (351)
                      +.
T Consensus       201 ~~  202 (253)
T cd05122         201 PP  202 (253)
T ss_pred             ch
Confidence            43

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.94  E-value=1.8e-27  Score=223.14  Aligned_cols=192  Identities=28%  Similarity=0.408  Sum_probs=155.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC--eEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG--HMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~--~~~l   75 (351)
                      +.||.|+||.||+|.+..+++.||+|.+...   ........+|+.+++++ +|+|      |++++++|...+  ..|+
T Consensus        13 ~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~n------i~~~~~~~~~~~~~~~~l   86 (337)
T cd07852          13 QKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPN------IVKLLNVIKAENDKDIYL   86 (337)
T ss_pred             HhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCC------ccceeeeeccCCCceEEE
Confidence            5799999999999999889999999988542   22334567899999999 8877      999999987543  7899


Q ss_pred             EEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          76 AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||||++++|.+++...   .+++..++.++.|++.+                       |.|||+.|++|+|+++.|+.+
T Consensus        87 v~e~~~~~L~~~~~~~---~~~~~~~~~i~~qi~~~-----------------------L~~LH~~~i~H~dl~p~nill  140 (337)
T cd07852          87 VFEYMETDLHAVIRAN---ILEDVHKRYIMYQLLKA-----------------------LKYIHSGNVIHRDLKPSNILL  140 (337)
T ss_pred             EecccccCHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEEE
Confidence            9999988999988764   46677777777777777                       999999999999999999887


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       141 ~-------------------------------------------------------------------------------  141 (337)
T cd07852         141 N-------------------------------------------------------------------------------  141 (337)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc--------ccccccccceeeCceeeec-CCCCCccceeeeeeeeEe
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--------HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--------~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~  306 (351)
                                      ..+.++|+|||.+.....        ......|++.|+|||.+.+ ..++.++|+||+||++|+
T Consensus       142 ----------------~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~sDi~slG~~l~e  205 (337)
T cd07852         142 ----------------SDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGSTRYTKGVDMWSVGCILGE  205 (337)
T ss_pred             ----------------CCCcEEEeeccchhccccccccccCcchhcccccccccCceeeeccccccccchHHHHHHHHHH
Confidence                            234688999998754221        1223567889999998876 456889999999999999


Q ss_pred             eccccccccccCCC
Q psy2006         307 LYLGITLMARKTKT  320 (351)
Q Consensus       307 l~tG~~pf~~~~~~  320 (351)
                      +++|..||.+.+..
T Consensus       206 l~tg~~pf~~~~~~  219 (337)
T cd07852         206 MLLGKPLFPGTSTL  219 (337)
T ss_pred             HHhCCCCCCCCChH
Confidence            99999999765543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.94  E-value=1.1e-27  Score=220.45  Aligned_cols=192  Identities=11%  Similarity=0.020  Sum_probs=144.9

Q ss_pred             ccccCcccceEEEEEEeec---CcEEEEEEecchhhh--h----------HHHHHHHHHHHHhCCCCCCCCcceeeeeee
Q psy2006           2 CSLNCVASNHVCTNVVYEV---DSVVALKIIKNVEKY--R----------EAARLEINALQKIGEKDPNGRHLCVKMLDW   66 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~---~~~vAiK~~~~~~~~--~----------~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~   66 (351)
                      ++||+|+||+||+|.+..+   ++.+|+|+.......  .          .....+...+..+.|.+      |+.+++.
T Consensus        18 ~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~------i~~~~~~   91 (294)
T PHA02882         18 KLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLG------IPKYYGC   91 (294)
T ss_pred             eEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCC------CCcEEEe
Confidence            5799999999999998777   778888875432110  0          01112223333444444      9999887


Q ss_pred             EeeCC----eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc
Q psy2006          67 FDYHG----HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK  142 (351)
Q Consensus        67 f~~~~----~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~  142 (351)
                      .....    ..++++|++..++.+.+....  ..++..++.++.|++.|                       |+|||+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~  146 (294)
T PHA02882         92 GSFKRCRMYYRFILLEKLVENTKEIFKRIK--CKNKKLIKNIMKDMLTT-----------------------LEYIHEHG  146 (294)
T ss_pred             eeEecCCceEEEEEEehhccCHHHHHHhhc--cCCHHHHHHHHHHHHHH-----------------------HHHHHhCC
Confidence            65543    568899999888888876643  35777788888888888                       99999999


Q ss_pred             ccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCC
Q psy2006         143 REVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFD  222 (351)
Q Consensus       143 i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~  222 (351)
                      ++|||+||.|+.+.                                                                  
T Consensus       147 iiHrDiKp~Nill~------------------------------------------------------------------  160 (294)
T PHA02882        147 ISHGDIKPENIMVD------------------------------------------------------------------  160 (294)
T ss_pred             eecCCCCHHHEEEc------------------------------------------------------------------
Confidence            99999999999875                                                                  


Q ss_pred             CCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceec----------cccccccccceeeCceeeecCCCC
Q psy2006         223 KLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD----------EHHSTIVSTRHYRAPEVILELGWA  292 (351)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~----------~~~~~~~gt~~y~aPE~~~~~~~~  292 (351)
                                                   ....++|+|||++....          .......||+.|+|||+..+..++
T Consensus       161 -----------------------------~~~~~~l~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~y~ape~~~~~~~~  211 (294)
T PHA02882        161 -----------------------------GNNRGYIIDYGIASHFIIHGKHIEYSKEQKDLHRGTLYYAGLDAHNGACVT  211 (294)
T ss_pred             -----------------------------CCCcEEEEEcCCceeeccCCcccccccccccccCCCccccCHHHhCCCCCC
Confidence                                         13457899999876421          111234689999999999988999


Q ss_pred             CccceeeeeeeeEeeccccccccccCC
Q psy2006         293 QPCDVWSIGCIIFELYLGITLMARKTK  319 (351)
Q Consensus       293 ~~~DiwslG~~l~~l~tG~~pf~~~~~  319 (351)
                      .++|+||+||+++++++|..||.+.+.
T Consensus       212 ~~~DiwSlG~~l~el~~g~~P~~~~~~  238 (294)
T PHA02882        212 RRGDLESLGYCMLKWAGIKLPWKGFGH  238 (294)
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCcccc
Confidence            999999999999999999999988743

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.94  E-value=2e-27  Score=212.57  Aligned_cols=192  Identities=24%  Similarity=0.351  Sum_probs=164.1

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ||.|+||.||++.+..+++.||+|++....    .....+..|+.+++.++|++      |+++++.++.++..|+||||
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~v~e~   74 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPF------IVKLHYAFQTEEKLYLVLEY   74 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCc------HHHHHHHeecCCeeEEEEec
Confidence            799999999999998889999999997643    23457788999999999877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++....  .+++..+..++.|++.+                       +.++|+.+++|+|+++.|+.+.  
T Consensus        75 ~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~~-----------------------l~~lh~~~~~H~~l~p~ni~~~--  127 (250)
T cd05123          75 APGGELFSHLSKEG--RFSEERARFYAAEIVLA-----------------------LEYLHSLGIIYRDLKPENILLD--  127 (250)
T ss_pred             CCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceecCCCcceEEEc--
Confidence            9 999999998764  47788888888888887                       9999999999999999999876  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (250)
T cd05123         128 --------------------------------------------------------------------------------  127 (250)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   ....++|+|||++.....   ......++..|++||.+.+...+.++|+||||++++++++|..||.
T Consensus       128 -------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p~~  194 (250)
T cd05123         128 -------------ADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEMLTGKPPFY  194 (250)
T ss_pred             -------------CCCcEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                         234689999998866432   2344567889999999988888899999999999999999999997


Q ss_pred             ccCCCc
Q psy2006         316 RKTKTK  321 (351)
Q Consensus       316 ~~~~~~  321 (351)
                      ..+..+
T Consensus       195 ~~~~~~  200 (250)
T cd05123         195 AEDRKE  200 (250)
T ss_pred             CCCHHH
Confidence            766433

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.94  E-value=2.7e-27  Score=213.43  Aligned_cols=193  Identities=15%  Similarity=0.185  Sum_probs=150.7

Q ss_pred             ccccCcccceEEEEEEee---cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEe-eCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYE---VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD-YHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~---~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~-~~~~~~l   75 (351)
                      +.||+|+||+||+|.+..   .+..||+|.+...  ....+.+.+|+.+++.++|+|      |+++++++. .++..++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~~l   74 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPN------VLSLLGICLPSEGSPLV   74 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCC------cceEEEEeecCCCCcEE
Confidence            579999999999999754   3468999998542  233456778999999999888      999999765 4557899


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||+ +++|.+++.... ...+...+..++.|++.|                       |.|||+.+++|||+++.|+.
T Consensus        75 v~e~~~~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dlk~~nil  130 (262)
T cd05058          75 VLPYMKHGDLRNFIRSET-HNPTVKDLIGFGLQVAKG-----------------------MEYLASKKFVHRDLAARNCM  130 (262)
T ss_pred             EEecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccccccCcceEE
Confidence            99999 899999997654 234555566666677776                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.+                                                                             
T Consensus       131 i~~-----------------------------------------------------------------------------  133 (262)
T cd05058         131 LDE-----------------------------------------------------------------------------  133 (262)
T ss_pred             EcC-----------------------------------------------------------------------------
Confidence            762                                                                             


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                        ...++|+|||++.....       ......+++.|+|||.+.+..++.++|+|||||++|++
T Consensus       134 ------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el  195 (262)
T cd05058         134 ------------------SFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL  195 (262)
T ss_pred             ------------------CCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccchHHHHHHHHHHHHHH
Confidence                              34589999998764211       11233456789999999888899999999999999999


Q ss_pred             cc-ccccccccCC
Q psy2006         308 YL-GITLMARKTK  319 (351)
Q Consensus       308 ~t-G~~pf~~~~~  319 (351)
                      ++ |.+||...+.
T Consensus       196 ~~~~~~~~~~~~~  208 (262)
T cd05058         196 MTRGAPPYPDVDS  208 (262)
T ss_pred             HcCCCCCCCCCCH
Confidence            99 5667765443

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.94  E-value=1.3e-27  Score=220.84  Aligned_cols=194  Identities=16%  Similarity=0.180  Sum_probs=155.8

Q ss_pred             CccccCcccceEEEEEEeecCc----EEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDS----VVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~----~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++.||+|+||.||+|.+..+++    .||+|++....  .....+.+|+.+++.+.|+|      |+++++++.. ...+
T Consensus        12 ~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~n------iv~~~~~~~~-~~~~   84 (303)
T cd05110          12 VKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPH------LVRLLGVCLS-PTIQ   84 (303)
T ss_pred             ccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC------cccEEEEEcC-CCce
Confidence            3679999999999999877776    57889886532  22335778999999999888      9999998865 4577


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +|+||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||+++++|+|+|+.|+
T Consensus        85 ~v~e~~~~g~l~~~~~~~~-~~~~~~~~~~~~~qi~~~-----------------------L~~LH~~~ivH~dikp~Ni  140 (303)
T cd05110          85 LVTQLMPHGCLLDYVHEHK-DNIGSQLLLNWCVQIAKG-----------------------MMYLEERRLVHRDLAARNV  140 (303)
T ss_pred             eeehhcCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHhhcCeecccccccee
Confidence            999999 899999987754 256777888888888887                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+                                                                            
T Consensus       141 ll~~----------------------------------------------------------------------------  144 (303)
T cd05110         141 LVKS----------------------------------------------------------------------------  144 (303)
T ss_pred             eecC----------------------------------------------------------------------------
Confidence            8762                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                         ...+||+|||.+......     .....++..|+|||.+.+..++.++|+|||||++|+++
T Consensus       145 -------------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~DiwslG~~l~el~  205 (303)
T cd05110         145 -------------------PNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSDVWSYGVTIWELM  205 (303)
T ss_pred             -------------------CCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHHHHHHHHHHHHHH
Confidence                               245899999988653211     11233467899999998888999999999999999998


Q ss_pred             c-ccccccccCCC
Q psy2006         309 L-GITLMARKTKT  320 (351)
Q Consensus       309 t-G~~pf~~~~~~  320 (351)
                      + |..||.+....
T Consensus       206 t~g~~p~~~~~~~  218 (303)
T cd05110         206 TFGGKPYDGIPTR  218 (303)
T ss_pred             hCCCCCCCCCCHH
Confidence            7 99999776433

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.94  E-value=6.1e-28  Score=219.36  Aligned_cols=210  Identities=18%  Similarity=0.275  Sum_probs=156.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||.|+||.||+|.+..+++.||+|++...    ....+.+.+|+.+++++. |+|      |+++++.|...+..++|
T Consensus         7 ~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~------i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           7 KIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPG------IIKLYYTFQDEENLYFV   80 (280)
T ss_pred             eeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCC------chhHHHHhcCCceEEEE
Confidence            5799999999999999999999999999753    223356788999999998 766      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||++ +++|.+++....  .+++..+..++.|++.+                       |.+||+.|++|+|+++.|+.+
T Consensus        81 ~e~~~~~~L~~~l~~~~--~l~~~~~~~i~~ql~~~-----------------------l~~Lh~~~~~H~dl~~~ni~i  135 (280)
T cd05581          81 LEYAPNGELLQYIRKYG--SLDEKCTRFYAAEILLA-----------------------LEYLHSKGIIHRDLKPENILL  135 (280)
T ss_pred             EcCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecCCCHHHeEE
Confidence            9999 999999998764  57888888888888887                       999999999999999877654


Q ss_pred             --------eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         156 --------IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       156 --------~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                              +|||++...............                                                   
T Consensus       136 ~~~~~~~l~df~~~~~~~~~~~~~~~~~~---------------------------------------------------  164 (280)
T cd05581         136 DKDMHIKITDFGTAKVLDPNSSPESNKGD---------------------------------------------------  164 (280)
T ss_pred             CCCCCEEecCCccccccCCccccccCCCC---------------------------------------------------
Confidence                    444444321111100000000                                                   


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                                   -..++..............++..|++||.+.....+.++|+||+||+++++
T Consensus       165 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l  215 (280)
T cd05581         165 -----------------------------ATNIDSQIEKNRRRFASFVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQM  215 (280)
T ss_pred             -----------------------------CccccccccccccccccccCCccccCHHHhCCCCCChhhhHHHHHHHHHHH
Confidence                                         000000000011122344677899999998888889999999999999999


Q ss_pred             ccccccccccCCCce
Q psy2006         308 YLGITLMARKTKTKY  322 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~  322 (351)
                      ++|..||...+....
T Consensus       216 ~~g~~p~~~~~~~~~  230 (280)
T cd05581         216 LTGKPPFRGSNEYLT  230 (280)
T ss_pred             HhCCCCCCCccHHHH
Confidence            999999987765443

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.94  E-value=2.6e-27  Score=219.57  Aligned_cols=192  Identities=17%  Similarity=0.139  Sum_probs=155.3

Q ss_pred             cccCc--ccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           3 SLNCV--ASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         3 ~iG~G--~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +||+|  ++|.||.+++..+++.||+|++...   ....+.+.+|+.+++.++|+|      |++++++|...+..+++|
T Consensus         5 ~i~~~~~~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~------i~~~~~~~~~~~~~~~~~   78 (314)
T cd08216           5 LIGKCFEDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPN------ILPYVTSFIVDSELYVVS   78 (314)
T ss_pred             hhhHhhcCCceEEEEEecCCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcc------hhhhhheeecCCeEEEEE
Confidence            45554  6677777777789999999999753   234467889999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++.......+++..++.++.|++.|                       |+|||+++++|+|+++.|+.+.
T Consensus        79 e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~-----------------------L~~LH~~~ivH~dlk~~Nili~  135 (314)
T cd08216          79 PLMAYGSCEDLLKTHFPEGLPELAIAFILKDVLNA-----------------------LDYIHSKGFIHRSVKASHILLS  135 (314)
T ss_pred             eccCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCcceEEEe
Confidence            999 8999999987654567888888888888887                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                                                                               
T Consensus       136 ~-------------------------------------------------------------------------------  136 (314)
T cd08216         136 G-------------------------------------------------------------------------------  136 (314)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc----------ccccccccceeeCceeeec--CCCCCccceeeeeeee
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHYRAPEVILE--LGWAQPCDVWSIGCII  304 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~--~~~~~~~DiwslG~~l  304 (351)
                                      .+.++++||+.+.....          ......++..|+|||.+.+  ..++.++|+||+||++
T Consensus       137 ----------------~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Diws~G~il  200 (314)
T cd08216         137 ----------------DGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVLQQNLQGYNEKSDIYSVGITA  200 (314)
T ss_pred             ----------------CCceEEecCccceeeccccccccccccccccccccccccCHHHhcCCCCCCCcchhHHHHHHHH
Confidence                            24577777776643211          1123446678999999876  3578899999999999


Q ss_pred             EeeccccccccccC
Q psy2006         305 FELYLGITLMARKT  318 (351)
Q Consensus       305 ~~l~tG~~pf~~~~  318 (351)
                      +++++|..||....
T Consensus       201 ~el~~g~~pf~~~~  214 (314)
T cd08216         201 CELANGHVPFKDMP  214 (314)
T ss_pred             HHHHhCCCCCCCCC
Confidence            99999999998654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=5e-27  Score=210.19  Aligned_cols=194  Identities=23%  Similarity=0.315  Sum_probs=165.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||.|++|.||+|.+..+++.||+|.+....   ...+.+.+|+++++++.|++      |+++++++...+..++|||
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~v~e   79 (254)
T cd06627           6 DLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN------IVKYIGSIETSDSLYIILE   79 (254)
T ss_pred             eEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCC------ccEEEEEEEeCCEEEEEEe
Confidence            57999999999999998899999999997643   34567889999999998877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ++ +++|.+++....  .+++..+..++.|++.+                       +.++|+.|++|+|+++.|+.+. 
T Consensus        80 ~~~~~~L~~~~~~~~--~l~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dl~p~ni~i~-  133 (254)
T cd06627          80 YAENGSLRQIIKKFG--PFPESLVAVYVYQVLQG-----------------------LAYLHEQGVIHRDIKAANILTT-  133 (254)
T ss_pred             cCCCCcHHHHHHhcc--CCCHHHHHHHHHHHHHH-----------------------HHHHhhCCcccCCCCHHHEEEC-
Confidence            99 889999988763  57888888888888887                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (254)
T cd06627         134 --------------------------------------------------------------------------------  133 (254)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecccc---ccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH---STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~---~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ....++|+|||.+.......   ....++..|+|||...+...+.++|+|++|++++++++|..||
T Consensus       134 --------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~~lG~~l~~l~~g~~p~  199 (254)
T cd06627         134 --------------KDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCTVIELLTGNPPY  199 (254)
T ss_pred             --------------CCCCEEEeccccceecCCCcccccccccchhhcCHhhhcCCCCCcchhHHHHHHHHHHHHhCCCCC
Confidence                          13468999999887643222   3456788999999988877889999999999999999999999


Q ss_pred             cccCCCc
Q psy2006         315 ARKTKTK  321 (351)
Q Consensus       315 ~~~~~~~  321 (351)
                      ...+...
T Consensus       200 ~~~~~~~  206 (254)
T cd06627         200 YDLNPMA  206 (254)
T ss_pred             CCccHHH
Confidence            7665433

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.94  E-value=1.5e-27  Score=217.09  Aligned_cols=194  Identities=25%  Similarity=0.369  Sum_probs=164.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||+|.||.||+|++..+++.||+|++...   ....+....|+.+++.+.|++      |+++++++...+..++|||
T Consensus         5 ~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~------i~~~~~~~~~~~~~~~v~e   78 (282)
T cd07829           5 EKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPN------IVKLLDVIHTERKLYLVFE   78 (282)
T ss_pred             hcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCC------HHHHHhhhhcCCceEEEec
Confidence            5799999999999999889999999999864   233456678999999998777      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |++++|.+++.... ..+++..+..++.|++.+                       |.+||+.|++|+|+++.|+.+.+ 
T Consensus        79 ~~~~~l~~~i~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~LH~~~i~H~~l~~~ni~~~~-  133 (282)
T cd07829          79 YCDMDLKKYLDKRP-GPLSPNLIKSIMYQLLRG-----------------------LAYCHSHRILHRDLKPQNILINR-  133 (282)
T ss_pred             CcCcCHHHHHHhhc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCChheEEEcC-
Confidence            99889999998864 357888888888888888                       99999999999999999998872 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (282)
T cd07829         134 --------------------------------------------------------------------------------  133 (282)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ...++|+|||.+......   .....++..|+|||.+.+. .++.++|+||+||+++++++|.+||
T Consensus       134 --------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~  199 (282)
T cd07829         134 --------------DGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYSTAVDIWSVGCIFAEMITGKPLF  199 (282)
T ss_pred             --------------CCCEEEecCCcccccCCCccccCccccCcCcCChHHhcCCcCCCccccHHHHHHHHHHHHhCCCCC
Confidence                          356899999988653322   2234456789999998776 7789999999999999999999999


Q ss_pred             cccCCC
Q psy2006         315 ARKTKT  320 (351)
Q Consensus       315 ~~~~~~  320 (351)
                      .+.+..
T Consensus       200 ~~~~~~  205 (282)
T cd07829         200 PGDSEI  205 (282)
T ss_pred             CCccHH
Confidence            877643

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.94  E-value=4.1e-27  Score=213.22  Aligned_cols=193  Identities=19%  Similarity=0.302  Sum_probs=156.6

Q ss_pred             ccccCcccceEEEEEEee-cCcEEEEEEecch-----------hhhhHHHHHHHHHHHH-hCCCCCCCCcceeeeeeeEe
Q psy2006           2 CSLNCVASNHVCTNVVYE-VDSVVALKIIKNV-----------EKYREAARLEINALQK-IGEKDPNGRHLCVKMLDWFD   68 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-~~~~vAiK~~~~~-----------~~~~~~~~~E~~~l~~-l~h~~~~g~~~Iv~l~~~f~   68 (351)
                      +.||.|+||.||+|.+.. .++.+|+|.+...           ......+.+|+.++.. +.|+|      |+++++++.
T Consensus         6 ~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~------i~~~~~~~~   79 (269)
T cd08528           6 EHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPN------IVRYYKTFL   79 (269)
T ss_pred             hhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCC------eeeEEeeEc
Confidence            679999999999999877 6899999998532           1122345678887765 67777      999999999


Q ss_pred             eCCeEEEEEecc-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-cccc
Q psy2006          69 YHGHMCIAFEIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKRE  144 (351)
Q Consensus        69 ~~~~~~lV~E~~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~  144 (351)
                      .+++.|+||||+ +++|.+++...  ....+++..+..++.|++.+                       +.|||+ .+++
T Consensus        80 ~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------l~~lh~~~~i~  136 (269)
T cd08528          80 ENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLA-----------------------LRYLHKEKRIV  136 (269)
T ss_pred             cCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHH-----------------------HHHhccCCcee
Confidence            999999999999 88999988542  22356777777777777777                       999996 7899


Q ss_pred             ccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         145 VRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       145 h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      |+|+++.|+.+.                                                                    
T Consensus       137 H~dl~~~nil~~--------------------------------------------------------------------  148 (269)
T cd08528         137 HRDLTPNNIMLG--------------------------------------------------------------------  148 (269)
T ss_pred             ecCCCHHHEEEC--------------------------------------------------------------------
Confidence            999999999876                                                                    


Q ss_pred             CchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeee
Q psy2006         225 PSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGC  302 (351)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  302 (351)
                                                 ....++|+|||.+.....  ......|+..|++||.+.+..++.++|+||||+
T Consensus       149 ---------------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~  201 (269)
T cd08528         149 ---------------------------EDDKVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGC  201 (269)
T ss_pred             ---------------------------CCCcEEEecccceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHH
Confidence                                       234689999998865332  223456788999999998888899999999999


Q ss_pred             eeEeeccccccccccC
Q psy2006         303 IIFELYLGITLMARKT  318 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~  318 (351)
                      ++|++++|..||...+
T Consensus       202 ll~~l~~g~~p~~~~~  217 (269)
T cd08528         202 ILYQMCTLQPPFYSTN  217 (269)
T ss_pred             HHHHHHhCCCcccccC
Confidence            9999999999997654

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.94  E-value=2.7e-27  Score=212.02  Aligned_cols=197  Identities=23%  Similarity=0.324  Sum_probs=167.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||.|+||.||++.+..+++.||+|++....   .....+.+|+++++.++|+|      ++++.+.+...+..++|+|
T Consensus         6 ~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------~~~~~~~~~~~~~~~lv~e   79 (258)
T cd08215           6 KQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPN------IIKYYESFEEKGKLCIVME   79 (258)
T ss_pred             eeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCC------hhheEEEEecCCEEEEEEE
Confidence            67999999999999998899999999997532   34566788999999999877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcC--CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          79 IL-GLSVFDFLKENN--YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~--~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ++ +++|.+++.+..  ...+++..+..++.|++.+                       +.+||+.|++|+|+++.|+.+
T Consensus        80 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~-----------------------l~~lh~~~~~H~dl~~~nil~  136 (258)
T cd08215          80 YADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLA-----------------------LKYLHSRKILHRDIKPQNIFL  136 (258)
T ss_pred             ecCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHH-----------------------HHHHHhCCEecccCChHHeEE
Confidence            99 789999998753  3467788888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       137 ~~------------------------------------------------------------------------------  138 (258)
T cd08215         137 TS------------------------------------------------------------------------------  138 (258)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            62                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                       ...++|+|||.+.....   ......|++.|+|||...+..++.++|+||+|++++++++|..
T Consensus       139 -----------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~Dv~slG~~~~~l~~g~~  201 (258)
T cd08215         139 -----------------NGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCTLKH  201 (258)
T ss_pred             -----------------CCcEEECCccceeecccCcceecceeeeecccChhHhccCCCCccccHHHHHHHHHHHHcCCC
Confidence                             34689999998865332   2234577889999999988889999999999999999999999


Q ss_pred             cccccCCCce
Q psy2006         313 LMARKTKTKY  322 (351)
Q Consensus       313 pf~~~~~~~~  322 (351)
                      ||...+..++
T Consensus       202 p~~~~~~~~~  211 (258)
T cd08215         202 PFEGENLLEL  211 (258)
T ss_pred             CCCCCcHHHH
Confidence            9977764443

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.94  E-value=1e-27  Score=221.56  Aligned_cols=195  Identities=22%  Similarity=0.344  Sum_probs=154.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-------   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-------   71 (351)
                      ++||.|+||.||+|.++.+++.||+|++....   .......+|+++++.++|++      |+++++.+....       
T Consensus        14 ~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~~~~   87 (311)
T cd07866          14 GKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPN------VVPLIDMAVERPDKSKRKR   87 (311)
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCC------ccchhhheecccccccccC
Confidence            57999999999999999999999999996432   12345678999999999877      999999886543       


Q ss_pred             -eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          72 -HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        72 -~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                       .+++||||++++|.+.+.... ..+++..++.++.|++.+                       |+|||++|++|+|+++
T Consensus        88 ~~~~lv~~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~l~~a-----------------------l~~lH~~~i~H~dl~p  143 (311)
T cd07866          88 GSVYMVTPYMDHDLSGLLENPS-VKLTESQIKCYMLQLLEG-----------------------INYLHENHILHRDIKA  143 (311)
T ss_pred             ceEEEEEecCCcCHHHHHhccc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCH
Confidence             579999999889988877643 357888888888888888                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      +|+.+.+                                                                         
T Consensus       144 ~nil~~~-------------------------------------------------------------------------  150 (311)
T cd07866         144 ANILIDN-------------------------------------------------------------------------  150 (311)
T ss_pred             HHEEECC-------------------------------------------------------------------------
Confidence            9987652                                                                         


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecc--------------ccccccccceeeCceeeecC-CCCCcc
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--------------HHSTIVSTRHYRAPEVILEL-GWAQPC  295 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--------------~~~~~~gt~~y~aPE~~~~~-~~~~~~  295 (351)
                                            ...++|+|||++.....              ......+++.|+|||.+.+. .++.++
T Consensus       151 ----------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~  208 (311)
T cd07866         151 ----------------------QGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRYTTAV  208 (311)
T ss_pred             ----------------------CCCEEECcCccchhccCCCcccccCCcccccccccceeccCcCChHHhhCCCccCchh
Confidence                                  23467777776643211              11223567889999988654 578899


Q ss_pred             ceeeeeeeeEeeccccccccccCCCc
Q psy2006         296 DVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       296 DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                      |+||+||++|+|++|.+||.+.+..+
T Consensus       209 Dv~slG~il~el~~g~~~~~~~~~~~  234 (311)
T cd07866         209 DIWGIGCVFAEMFTRRPILQGKSDID  234 (311)
T ss_pred             HhHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            99999999999999999998776544

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.94  E-value=2.4e-27  Score=218.34  Aligned_cols=193  Identities=23%  Similarity=0.380  Sum_probs=158.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-------   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-------   71 (351)
                      ++||.|+||.||+|.++.+++.||+|++....   .......+|+++++.++|+|      |+++++++....       
T Consensus        13 ~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~------i~~~~~~~~~~~~~~~~~~   86 (302)
T cd07864          13 GQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRN------IVNLKEIVTDKQDALDFKK   86 (302)
T ss_pred             eeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCC------eeeeeheecCcchhhhccc
Confidence            57999999999999998899999999997532   22345678999999999887      999999987655       


Q ss_pred             ---eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccccc
Q psy2006          72 ---HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV  148 (351)
Q Consensus        72 ---~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~  148 (351)
                         ++|+|+||+++++.+.+.... ..+++..+..++.|++.|                       |.|||+.|++|+|+
T Consensus        87 ~~~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~i~H~dl  142 (302)
T cd07864          87 DKGAFYLVFEYMDHDLMGLLESGL-VHFSEDHIKSFMKQLLEG-----------------------LNYCHKKNFLHRDI  142 (302)
T ss_pred             cCCcEEEEEcccCccHHHHHhcCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCC
Confidence               899999999888988877653 367888888888888888                       99999999999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      ++.|+.+.                                                                        
T Consensus       143 ~p~nili~------------------------------------------------------------------------  150 (302)
T cd07864         143 KCSNILLN------------------------------------------------------------------------  150 (302)
T ss_pred             CHHHEEEC------------------------------------------------------------------------
Confidence            99998776                                                                        


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecC-CCCCccceeeeeee
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCI  303 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~  303 (351)
                                             ....+||+|||.+......    .....++..|+|||.+.+. .++.++|+||+||+
T Consensus       151 -----------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~~Di~slG~~  207 (302)
T cd07864         151 -----------------------NKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCGCI  207 (302)
T ss_pred             -----------------------CCCcEEeCcccccccccCCcccccccceeccCccChHHhcCCCCCCchhHHHHHHHH
Confidence                                   2356899999988653221    1223457789999988654 46889999999999


Q ss_pred             eEeeccccccccccCC
Q psy2006         304 IFELYLGITLMARKTK  319 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~  319 (351)
                      ++++++|.+||...+.
T Consensus       208 ~~el~~g~~~~~~~~~  223 (302)
T cd07864         208 LGELFTKKPIFQANQE  223 (302)
T ss_pred             HHHHHhCCCCCCCCCh
Confidence            9999999999976543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.94  E-value=1.2e-27  Score=217.91  Aligned_cols=196  Identities=24%  Similarity=0.392  Sum_probs=163.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++.||.|++|.||+|.+..+++.+|+|.+....   .......+|+.+++.++|++      |+++++++..++..++|+
T Consensus         4 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~v~   77 (283)
T cd05118           4 LGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPN------IIKLLDVFRHKGDLYLVF   77 (283)
T ss_pred             ceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCC------cchHHHhhccCCCEEEEE
Confidence            367999999999999998899999999997542   23456778999999999777      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||++++|.+++.... ..+++..+..++.|++.+                       |.|||+.+++|+|+++.|+.+.+
T Consensus        78 e~~~~~l~~~l~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~LH~~~i~H~dl~p~nili~~  133 (283)
T cd05118          78 EFMDTDLYKLIKDRQ-RGLPESLIKSYLYQLLQG-----------------------LAFCHSHGILHRDLKPENLLINT  133 (283)
T ss_pred             eccCCCHHHHHHhhc-ccCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecCcCHHHEEECC
Confidence            999889999887754 467777788888888777                       99999999999999999998762


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (283)
T cd05118         134 --------------------------------------------------------------------------------  133 (283)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ...++|+|||.+......   .....++..|+|||.+.+. .++.++|+||+|+++|+++||..|
T Consensus       134 ---------------~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~~Di~slG~~l~~l~tg~~~  198 (283)
T cd05118         134 ---------------EGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYSTPVDIWSVGCIFAELLSRRPL  198 (283)
T ss_pred             ---------------CCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcCCCCCchhHHHHHHHHHHHHHhCCCC
Confidence                           346899999987653322   2335677889999998776 678999999999999999999999


Q ss_pred             ccccCCCc
Q psy2006         314 MARKTKTK  321 (351)
Q Consensus       314 f~~~~~~~  321 (351)
                      |...+..+
T Consensus       199 ~~~~~~~~  206 (283)
T cd05118         199 FPGKSEID  206 (283)
T ss_pred             CCCCCHHH
Confidence            97766533

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>KOG0984|consensus

Probab=99.94  E-value=1.5e-27  Score=198.78  Aligned_cols=195  Identities=17%  Similarity=0.246  Sum_probs=157.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++.||+|+||.|=+-++.++|...|+|.+...  ....+...+|+++-.+-. ..|    ++|+.++.+-..+.+||.||
T Consensus        51 i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~-~CP----f~V~FyGa~~regdvwIcME  125 (282)
T KOG0984|consen   51 IEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTV-DCP----FTVHFYGALFREGDVWICME  125 (282)
T ss_pred             hhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCC-CCC----eEEEeehhhhccccEEEeHH
Confidence            35799999999999999999999999999753  234455667777655432 222    39999999999999999999


Q ss_pred             ccCCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCeEE
Q psy2006          79 ILGLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDIRL  155 (351)
Q Consensus        79 ~~g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni~l  155 (351)
                      .+..||..+-+..  ....+||..+-+++-.+..|                       |.|||++ .++|||+||+|+.+
T Consensus       126 ~M~tSldkfy~~v~~~g~~ipE~vlGkIa~Svv~a-----------------------l~~L~~kL~vIHRDvKPsNiLI  182 (282)
T KOG0984|consen  126 LMDTSLDKFYRKVLKKGGTIPEDVLGKIAVSVVHA-----------------------LEFLHSKLSVIHRDVKPSNILI  182 (282)
T ss_pred             HhhhhHHHHHHHHHhcCCcCchHHhhHhHHHHHHH-----------------------HHHHHHHhhhhhccCCcceEEE
Confidence            9999998876544  33567888888888777777                       9999986 59999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       183 n-------------------------------------------------------------------------------  183 (282)
T KOG0984|consen  183 N-------------------------------------------------------------------------------  183 (282)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecccc--ccccccceeeCceeeec----CCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILE----LGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~--~~~~gt~~y~aPE~~~~----~~~~~~~DiwslG~~l~~l~t  309 (351)
                                      ..+.||+||||.+.......  +-..|+..|||||.+..    .+|+.++|+||||+++.||++
T Consensus       184 ----------------~~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~n~~gY~vksDvWSLGItmiElA~  247 (282)
T KOG0984|consen  184 ----------------YDGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPELNQKGYSVKSDVWSLGITMIEMAI  247 (282)
T ss_pred             ----------------cCCcEEEcccccceeehhhhHHHHhcCCCccCChhhcCcccCcccceeehhhhhhhhhhhhhhh
Confidence                            35789999999987643322  33678899999998863    478999999999999999999


Q ss_pred             ccccccccC
Q psy2006         310 GITLMARKT  318 (351)
Q Consensus       310 G~~pf~~~~  318 (351)
                      +++|++..-
T Consensus       248 lr~PY~~w~  256 (282)
T KOG0984|consen  248 LRFPYESWG  256 (282)
T ss_pred             ccccccccC
Confidence            999997653

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.94  E-value=3.4e-27  Score=211.24  Aligned_cols=191  Identities=20%  Similarity=0.263  Sum_probs=165.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~~lV   76 (351)
                      +.||+|++|.||+|.+..+++.|++|++....   ...+.+.+|+.+++++.|++      |+++++.+...  ...++|
T Consensus         6 ~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~~lv   79 (260)
T cd06606           6 ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPN------IVRYYGSERDEEKNTLNIF   79 (260)
T ss_pred             eEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCC------EeeEEEEEecCCCCeEEEE
Confidence            57999999999999998899999999997643   34567789999999999877      99999999998  899999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      +||+ +++|.+++....  .+++..+..++.|++.+                       +.|||+.+++|+|+++.|+.+
T Consensus        80 ~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~~l~~~-----------------------l~~lh~~~~~h~dl~p~ni~i  134 (260)
T cd06606          80 LEYVSGGSLSSLLKKFG--KLPEPVIRKYTRQILEG-----------------------LAYLHSNGIVHRDIKGANILV  134 (260)
T ss_pred             EEecCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCCHHHEEE
Confidence            9999 999999998765  67788888888888877                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       135 ~~------------------------------------------------------------------------------  136 (260)
T cd06606         135 DS------------------------------------------------------------------------------  136 (260)
T ss_pred             cC------------------------------------------------------------------------------
Confidence            72                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                       ...++|+|||.+......     .....++..|++||.+.+...+.++|+||+|++++++++|
T Consensus       137 -----------------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv~slG~il~~l~~g  199 (260)
T cd06606         137 -----------------DGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSLGCTVIEMATG  199 (260)
T ss_pred             -----------------CCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhC
Confidence                             356899999988764322     3446678899999999888889999999999999999999


Q ss_pred             cccccccC
Q psy2006         311 ITLMARKT  318 (351)
Q Consensus       311 ~~pf~~~~  318 (351)
                      ..||....
T Consensus       200 ~~p~~~~~  207 (260)
T cd06606         200 KPPWSELG  207 (260)
T ss_pred             CCCCCCCC
Confidence            99998765

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>KOG0587|consensus

Probab=99.94  E-value=1.6e-26  Score=226.60  Aligned_cols=200  Identities=21%  Similarity=0.302  Sum_probs=169.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC-----CeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH-----GHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~-----~~~~lV   76 (351)
                      +.||.|.||.||+++++.+++.+|+|+.....+..++...|.++|+.+.+ |||    ++..+++|...     +.+|||
T Consensus        25 evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~deEiE~eynil~~~~~-hpn----v~~fyg~~~k~~~~~~DqLWLV   99 (953)
T KOG0587|consen   25 EVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDEEEEIELEYNMLKKYSH-HPN----VATFYGAFIKKDPGNGDQLWLV   99 (953)
T ss_pred             EEEeeccceeEEEEeeeecCceeeeEeecCCccccHHHHHHHHHHHhccC-CCC----cceEEEEEEEecCCCCCeEEEE
Confidence            56999999999999999999999999999877778888899999999863 333    99999998744     389999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||| |||..|+++.-...+                       +.++.+.++.++++.|+.+||...++|||+|-.||.|
T Consensus       100 MEfC~gGSVTDLVKn~~g~r-----------------------l~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLL  156 (953)
T KOG0587|consen  100 MEFCGGGSVTDLVKNTKGNR-----------------------LKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLL  156 (953)
T ss_pred             eeccCCccHHHHHhhhcccc-----------------------hhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEE
Confidence            9999 999999998875333                       5566666777777777999999999999999999999


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       157 T-------------------------------------------------------------------------------  157 (953)
T KOG0587|consen  157 T-------------------------------------------------------------------------------  157 (953)
T ss_pred             e-------------------------------------------------------------------------------
Confidence            8                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecC-----CCCCccceeeeeeeeEee
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILEL-----GWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~-----~~~~~~DiwslG~~l~~l  307 (351)
                                      ....|||+|||.+...+.   ..++++|||.|||||++.-.     .|...+|+||||++..||
T Consensus       158 ----------------~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac~e~~d~tyd~R~D~WsLGITaIEl  221 (953)
T KOG0587|consen  158 ----------------ENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIACDESPDATYDYRSDLWSLGITAIEM  221 (953)
T ss_pred             ----------------ccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeecccCCCCCcccccchhhccceeehh
Confidence                            356799999999876443   45689999999999999742     467889999999999999


Q ss_pred             ccccccccccCCCceee
Q psy2006         308 YLGITLMARKTKTKYFY  324 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~~~  324 (351)
                      .-|.+|+...-.+..+.
T Consensus       222 adG~PPl~DmHPmraLF  238 (953)
T KOG0587|consen  222 AEGAPPLCDMHPMRALF  238 (953)
T ss_pred             cCCCCCccCcchhhhhc
Confidence            99999998887776654

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.94  E-value=3.8e-27  Score=211.34  Aligned_cols=198  Identities=19%  Similarity=0.251  Sum_probs=164.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      .++||+|+||.||++.+..+++.+|+|.+...   ........+|+.+++.++|+|      |+++.+.+....+.++||
T Consensus         5 ~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------i~~~~~~~~~~~~~~~v~   78 (256)
T cd08530           5 LKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN------IISYKEAFLDGNKLCIVM   78 (256)
T ss_pred             eeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCC------chhhhhhhccCCEEEEEe
Confidence            36899999999999999889999999999753   233456678999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcC--CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          78 EIL-GLSVFDFLKENN--YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~--~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||+ +++|.+++.+..  ...+++..+..++.|++.|                       |.|||+.|++|+|+++.|+.
T Consensus        79 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~a-----------------------l~~lh~~~i~h~~l~~~ni~  135 (256)
T cd08530          79 EYAPFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRG-----------------------LQALHEQKILHRDLKSANIL  135 (256)
T ss_pred             hhcCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-----------------------HHHHhhCCcccCCCCcceEE
Confidence            999 889999987632  1246666777777777777                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.+                                                                             
T Consensus       136 ~~~-----------------------------------------------------------------------------  138 (256)
T cd08530         136 LVA-----------------------------------------------------------------------------  138 (256)
T ss_pred             Eec-----------------------------------------------------------------------------
Confidence            872                                                                             


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceeccc-cccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                        ...++++|||++...... .....+++.|++||.+.+..++.++|+||+|++++++++|..|
T Consensus       139 ------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~D~~slG~~~~~l~~g~~p  200 (256)
T cd08530         139 ------------------NDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLYEMATFAPP  200 (256)
T ss_pred             ------------------CCcEEEeeccchhhhccCCcccccCCccccCHHHHCCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence                              346899999988654322 2335678899999999888889999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |...+..+.
T Consensus       201 ~~~~~~~~~  209 (256)
T cd08530         201 FEARSMQDL  209 (256)
T ss_pred             CCCCCHHHH
Confidence            987765443

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.94  E-value=5.7e-27  Score=213.65  Aligned_cols=198  Identities=15%  Similarity=0.142  Sum_probs=158.0

Q ss_pred             ccccCcccceEEEEEEee----cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee-CCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYE----VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY-HGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~----~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~-~~~~~   74 (351)
                      +.||+|+||.||+|.+..    .++.||+|++...  ....+.+.+|+.+++.++|+|      |+++++++.. +...+
T Consensus        12 ~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~n------i~~~~~~~~~~~~~~~   85 (280)
T cd05043          12 DLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQN------ILPILHVCIEDGEPPF   85 (280)
T ss_pred             eeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCC------CCeEEEEEecCCCCCE
Confidence            579999999999999876    3688999998743  233566788999999999888      9999998765 46899


Q ss_pred             EEEecc-CCCHHHHHHhcCC------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccc
Q psy2006          75 IAFEIL-GLSVFDFLKENNY------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRR  147 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d  147 (351)
                      +++||+ +++|.+++.....      ..+++..+..++.|++.|                       |.|||+.+++|+|
T Consensus        86 ~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~-----------------------l~~LH~~~i~H~d  142 (280)
T cd05043          86 VLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACG-----------------------MSYLHKRGVIHKD  142 (280)
T ss_pred             EEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeecc
Confidence            999999 7999999977532      246666777777777777                       9999999999999


Q ss_pred             cCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         148 VRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       148 ~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +++.|+.+.+                                                                      
T Consensus       143 i~p~nil~~~----------------------------------------------------------------------  152 (280)
T cd05043         143 IAARNCVIDE----------------------------------------------------------------------  152 (280)
T ss_pred             cCHhhEEEcC----------------------------------------------------------------------
Confidence            9999998762                                                                      


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGC  302 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  302 (351)
                                               ...+||+|||+++.....     .....++..|+|||.+.+..++.++|+||+||
T Consensus       153 -------------------------~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~Di~slG~  207 (280)
T cd05043         153 -------------------------ELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLVNKEYSSASDVWSFGV  207 (280)
T ss_pred             -------------------------CCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHhcCCCCchhhHHHhHH
Confidence                                     246889999988642111     11233456799999998888899999999999


Q ss_pred             eeEeecc-ccccccccCCCcee
Q psy2006         303 IIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       303 ~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      ++|++++ |..||...+..++.
T Consensus       208 ~l~el~~~g~~p~~~~~~~~~~  229 (280)
T cd05043         208 LLWELMTLGQTPYVEIDPFEMA  229 (280)
T ss_pred             HHHHHhcCCCCCcCcCCHHHHH
Confidence            9999998 99999877655543

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>KOG4278|consensus

Probab=99.94  E-value=6.4e-28  Score=228.25  Aligned_cols=198  Identities=19%  Similarity=0.224  Sum_probs=168.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      -|||-|.||.||-|.+++..-.||||.++.+....++++.|+.+|+.+.|+|      +|+|+++++-..-+|||.||| 
T Consensus       273 hKLGGGQYGeVYeGvWKkyslTvAVKtLKEDtMeveEFLkEAAvMKeikHpN------LVqLLGVCT~EpPFYIiTEfM~  346 (1157)
T KOG4278|consen  273 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN------LVQLLGVCTHEPPFYIITEFMC  346 (1157)
T ss_pred             eccCCCcccceeeeeeeccceeeehhhhhhcchhHHHHHHHHHHHHhhcCcc------HHHHhhhhccCCCeEEEEeccc
Confidence            3799999999999999999999999999988888899999999999999888      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      .|+|.++++++....++--...-++.                       ||..|++||-.++++|||+..-|+.++    
T Consensus       347 yGNLLdYLRecnr~ev~avvLlyMAt-----------------------QIsSaMeYLEkknFIHRDLAARNCLVg----  399 (1157)
T KOG4278|consen  347 YGNLLDYLRECNRSEVPAVVLLYMAT-----------------------QISSAMEYLEKKNFIHRDLAARNCLVG----  399 (1157)
T ss_pred             CccHHHHHHHhchhhcchhHHHHHHH-----------------------HHHHHHHHHHHhhhhhhhhhhhhcccc----
Confidence            99999999998744444333444444                       444559999999999999988887776    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       400 --------------------------------------------------------------------------------  399 (1157)
T KOG4278|consen  400 --------------------------------------------------------------------------------  399 (1157)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecccc-cccccc---ceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-STIVST---RHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-~~~~gt---~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....||++|||++++..... ....|.   ..|+|||.+-...++.++|+|+||++|||++| |..||.
T Consensus       400 -----------EnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKSDVWAFGVLLWEIATYGMsPYP  468 (1157)
T KOG4278|consen  400 -----------ENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYP  468 (1157)
T ss_pred             -----------ccceEEeeccchhhhhcCCceecccCccCcccccCcccccccccccchhhHHHHHHHHHHHhcCCCCCC
Confidence                       34578999999998754433 333443   47999999999999999999999999999996 999999


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +-+-..+|
T Consensus       469 GidlSqVY  476 (1157)
T KOG4278|consen  469 GIDLSQVY  476 (1157)
T ss_pred             CccHHHHH
Confidence            98877665

>KOG0603|consensus

Probab=99.94  E-value=3.8e-28  Score=231.61  Aligned_cols=210  Identities=22%  Similarity=0.280  Sum_probs=168.9

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      .+|.|+|+.|-++.+..+++.+|+|++.+.   .....+|+.++.... |+|      |+++.+.+.+..++|+|||.+ 
T Consensus       329 ~~~~gs~s~~~~~~~~~t~~~~~vkii~~~---~~~~~~e~~~~~~~~~h~n------iv~~~~v~~~~~~~~~v~e~l~  399 (612)
T KOG0603|consen  329 ELGEGSFSAVKYCESSPTDQEPAVKIISKR---ADDNQDEIPISLLVRDHPN------IVKSHDVYEDGKEIYLVMELLD  399 (612)
T ss_pred             ccCCCCccceeeeeccccccchhheecccc---ccccccccchhhhhcCCCc------ceeecceecCCceeeeeehhcc
Confidence            589999999999999999999999999864   223345776666654 444      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      |+-+.+.+....   .....+..|+.||+.+                       ++|||++|++|||+|++||.+.+   
T Consensus       400 g~ell~ri~~~~---~~~~e~~~w~~~lv~A-----------------------v~~LH~~gvvhRDLkp~NIL~~~---  450 (612)
T KOG0603|consen  400 GGELLRRIRSKP---EFCSEASQWAAELVSA-----------------------VDYLHEQGVVHRDLKPGNILLDG---  450 (612)
T ss_pred             ccHHHHHHHhcc---hhHHHHHHHHHHHHHH-----------------------HHHHHhcCeeecCCChhheeecC---
Confidence            877777766653   3336666788888777                       99999999999999999998840   


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       451 --------------------------------------------------------------------------------  450 (612)
T KOG0603|consen  451 --------------------------------------------------------------------------------  450 (612)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCCC
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKT  320 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~  320 (351)
                                 ..++++|+|||.+........+.+-|..|.|||++...+++.+.|+||||++||+|++|..||......
T Consensus       451 -----------~~g~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~  519 (612)
T KOG0603|consen  451 -----------SAGHLRLTYFGFWSELERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG  519 (612)
T ss_pred             -----------CCCcEEEEEechhhhCchhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch
Confidence                       246799999999876554444556678999999999999999999999999999999999999998877


Q ss_pred             -ceee-ecccCCcccccccccccccCccC
Q psy2006         321 -KYFY-HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       321 -~~~~-~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                       ++.. -+...++      ..||++||+|
T Consensus       520 ~ei~~~i~~~~~s------~~vS~~AKdL  542 (612)
T KOG0603|consen  520 IEIHTRIQMPKFS------ECVSDEAKDL  542 (612)
T ss_pred             HHHHHhhcCCccc------cccCHHHHHH
Confidence             3322 1221222      5899999987

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.94  E-value=6.4e-27  Score=218.99  Aligned_cols=191  Identities=25%  Similarity=0.395  Sum_probs=155.3

Q ss_pred             ccccCcccceEEEEEEeec--CcEEEEEEecchh---hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeC----C
Q psy2006           2 CSLNCVASNHVCTNVVYEV--DSVVALKIIKNVE---KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYH----G   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~--~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~----~   71 (351)
                      +.||+|+||.||+|.+..+  ++.||+|++....   ...+...+|+.+++++. |+|      |+++++.+...    .
T Consensus         6 ~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~------iv~~~~~~~~~~~~~~   79 (332)
T cd07857           6 KELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKN------ITCLYDMDIVFPGNFN   79 (332)
T ss_pred             EEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCC------hheeeeeeeeccccCC
Confidence            5799999999999999877  8999999987431   22345678999999994 666      99999875433    3


Q ss_pred             eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          72 HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        72 ~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      .+++++|+++++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|++
T Consensus        80 ~~~~~~e~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~givH~dlkp~  134 (332)
T cd07857          80 ELYLYEELMEADLHQIIRSGQ--PLTDAHFQSFIYQILCG-----------------------LKYIHSANVLHRDLKPG  134 (332)
T ss_pred             cEEEEEecccCCHHHHHhcCC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCHH
Confidence            789999999999999987654  57888888888888888                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.                                                                           
T Consensus       135 Nili~---------------------------------------------------------------------------  139 (332)
T cd07857         135 NLLVN---------------------------------------------------------------------------  139 (332)
T ss_pred             HeEEc---------------------------------------------------------------------------
Confidence            99876                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeec-CCCCCccceeeeeee
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCI  303 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~  303 (351)
                                          ..+.++|+|||.+.....       ......|++.|+|||.+.+ ..++.++|+||+||+
T Consensus       140 --------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~Di~slGv~  199 (332)
T cd07857         140 --------------------ADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDVWSVGCI  199 (332)
T ss_pred             --------------------CCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCCCCCCcHHHHHHHHHH
Confidence                                134689999998864221       1223568899999998765 467899999999999


Q ss_pred             eEeeccccccccccC
Q psy2006         304 IFELYLGITLMARKT  318 (351)
Q Consensus       304 l~~l~tG~~pf~~~~  318 (351)
                      ++++++|.+||...+
T Consensus       200 l~~l~~g~~pf~~~~  214 (332)
T cd07857         200 LAELLGRKPVFKGKD  214 (332)
T ss_pred             HHHHHhCCcCCCCCC
Confidence            999999999997654

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.94  E-value=7.5e-27  Score=211.85  Aligned_cols=197  Identities=15%  Similarity=0.147  Sum_probs=154.9

Q ss_pred             ccccCcccceEEEEEEee---cCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC----
Q psy2006           2 CSLNCVASNHVCTNVVYE---VDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG----   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~---~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~----   71 (351)
                      +.||+|+||+||+|.++.   +++.||||++...   ....+.+.+|+++++.+.|+|      |+++++++....    
T Consensus         5 ~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~~   78 (273)
T cd05074           5 RMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPN------VIKLIGVSLRSRAKGR   78 (273)
T ss_pred             hcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCC------cceEEEEEccCCCCCc
Confidence            579999999999998654   5789999999753   233456788999999999887      999999887543    


Q ss_pred             --eEEEEEecc-CCCHHHHHHhcC----CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccc
Q psy2006          72 --HMCIAFEIL-GLSVFDFLKENN----YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKRE  144 (351)
Q Consensus        72 --~~~lV~E~~-g~sL~~~l~~~~----~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~  144 (351)
                        ..++++||+ +++|.+++....    ...+++..+..++.|++.+                       ++|||+.+++
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~  135 (273)
T cd05074          79 LPIPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASG-----------------------MEYLSSKNFI  135 (273)
T ss_pred             ccceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEe
Confidence              347899999 899998875432    1235666677777777766                       9999999999


Q ss_pred             ccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         145 VRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       145 h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      |+|+|+.|+.+.+                                                                   
T Consensus       136 H~dikp~nili~~-------------------------------------------------------------------  148 (273)
T cd05074         136 HRDLAARNCMLNE-------------------------------------------------------------------  148 (273)
T ss_pred             ecccchhhEEEcC-------------------------------------------------------------------
Confidence            9999999998762                                                                   


Q ss_pred             CchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceee
Q psy2006         225 PSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWS  299 (351)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Diws  299 (351)
                                                  ...++++|||.+.....     ......+++.|++||.+....++.++|+||
T Consensus       149 ----------------------------~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~sDi~s  200 (273)
T cd05074         149 ----------------------------NMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWLALESLADNVYTTHSDVWA  200 (273)
T ss_pred             ----------------------------CCCEEECcccccccccCCcceecCCCccCchhhcCHhHHhcCccchhhhhHH
Confidence                                        24588999998765321     112234557899999998888899999999


Q ss_pred             eeeeeEeecc-ccccccccCCCce
Q psy2006         300 IGCIIFELYL-GITLMARKTKTKY  322 (351)
Q Consensus       300 lG~~l~~l~t-G~~pf~~~~~~~~  322 (351)
                      |||++|++++ |.+||.+.+..+.
T Consensus       201 lG~il~el~~~g~~p~~~~~~~~~  224 (273)
T cd05074         201 FGVTMWEIMTRGQTPYAGVENSEI  224 (273)
T ss_pred             HHHHHHHHhhCCCCCCCCCCHHHH
Confidence            9999999998 9999987765544

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG1006|consensus

Probab=99.94  E-value=5.8e-28  Score=208.20  Aligned_cols=196  Identities=23%  Similarity=0.281  Sum_probs=152.2

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +..||.|+||+|++-.++.+|+.+|||.++...  ....+++.|..+..+-+ ..+    +||+.+++.-.++-.||.||
T Consensus        69 lg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~-~cp----~IVkfyGa~F~EGdcWiCME  143 (361)
T KOG1006|consen   69 LGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSS-NCP----NIVKFYGALFSEGDCWICME  143 (361)
T ss_pred             HHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhc-CCc----HHHHHhhhhhcCCceeeeHH
Confidence            357999999999999999999999999997643  44556677776655532 223    39999999999999999999


Q ss_pred             ccCCCHHHHHHhc---CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeE
Q psy2006          79 ILGLSVFDFLKEN---NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIR  154 (351)
Q Consensus        79 ~~g~sL~~~l~~~---~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~  154 (351)
                      .|..||..+-+.-   ....+||+.+-                       .+....+.||+||-. ..|+|||+||+||.
T Consensus       144 LMd~SlDklYk~vy~vq~~~ipE~Ilg-----------------------~ItvatV~AL~yLK~~lkiIHRDvKPSNIL  200 (361)
T KOG1006|consen  144 LMDISLDKLYKRVYSVQKSRIPENILG-----------------------HITVATVDALDYLKEELKIIHRDVKPSNIL  200 (361)
T ss_pred             HHhhhHHHHHHHHHHHHhccCcHhhhh-----------------------heeeeehhHHHHHHHHhhhhhccCChhheE
Confidence            9988877654432   22234444444                       444445555999875 46999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      |-                                                                              
T Consensus       201 ld------------------------------------------------------------------------------  202 (361)
T KOG1006|consen  201 LD------------------------------------------------------------------------------  202 (361)
T ss_pred             Ee------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeee--cCCCCCccceeeeeeeeEeeccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVIL--ELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~--~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                       .++.|||+|||.|.....  ..+--+|+..|||||.+-  +.++..++|+||||++++|++||
T Consensus       203 -----------------r~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmAPERi~p~~~gyDiRSDvWSLGITL~EvAtG  265 (361)
T KOG1006|consen  203 -----------------RHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMAPERIDPSDKGYDIRSDVWSLGITLYEVATG  265 (361)
T ss_pred             -----------------cCCCEeeecccchHhHHHHHHhhhccCCccccChhccCCccCCcchhhhhhhhcceEeeeecC
Confidence                             568999999999876332  234467889999999986  34689999999999999999999


Q ss_pred             cccccccCC
Q psy2006         311 ITLMARKTK  319 (351)
Q Consensus       311 ~~pf~~~~~  319 (351)
                      .+|+.+.+.
T Consensus       266 ~fPyr~w~s  274 (361)
T KOG1006|consen  266 NFPYRKWDS  274 (361)
T ss_pred             CCCcchHHH
Confidence            999988764

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.94  E-value=4.3e-27  Score=211.99  Aligned_cols=194  Identities=23%  Similarity=0.262  Sum_probs=158.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch------hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV------EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~------~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++||.|+||.||++.+...+..+++|+++..      ......+.+|+.+++.++|+|      |+++++++......|+
T Consensus         6 ~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~l   79 (260)
T cd08222           6 QRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPA------IVKFHASFLERDAFCI   79 (260)
T ss_pred             eeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCc------HHHHHHHHhcCCceEE
Confidence            6899999999999999888887888887531      122345668999999999888      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          76 AFEIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ||||+ +++|.+++...  ....+++..++.++.|++.+                       +.|||+.|++|+|+++.|
T Consensus        80 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------------l~~lH~~~i~h~~l~~~n  136 (260)
T cd08222          80 ITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLG-----------------------VHYMHQRRILHRDLKAKN  136 (260)
T ss_pred             EEEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHH-----------------------HHHHHHcCccccCCChhh
Confidence            99999 88999988753  22357777777777777777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.+                                                                           
T Consensus       137 ili~~---------------------------------------------------------------------------  141 (260)
T cd08222         137 IFLKN---------------------------------------------------------------------------  141 (260)
T ss_pred             eEeec---------------------------------------------------------------------------
Confidence            97751                                                                           


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                           ..++|+|||.+.....   ......|++.|+|||.+.+..++.++|+||+|++++++++
T Consensus       142 ---------------------~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~Dv~slG~~~~~l~~  200 (260)
T cd08222         142 ---------------------NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGYDSKSDIWSLGCILYEMCC  200 (260)
T ss_pred             ---------------------CCEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCCCchhhHHHHHHHHHHHHh
Confidence                                 2478999998765321   2234567889999999888888899999999999999999


Q ss_pred             ccccccccCCC
Q psy2006         310 GITLMARKTKT  320 (351)
Q Consensus       310 G~~pf~~~~~~  320 (351)
                      |..||...+..
T Consensus       201 ~~~~~~~~~~~  211 (260)
T cd08222         201 LAHAFEGQNFL  211 (260)
T ss_pred             CCCCCCCccHH
Confidence            99999765543

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>KOG0199|consensus

Probab=99.94  E-value=2.5e-27  Score=226.87  Aligned_cols=197  Identities=16%  Similarity=0.178  Sum_probs=162.8

Q ss_pred             ccccCcccceEEEEEEeec-C--cEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEV-D--SVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~-~--~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      |+||+|.||+||+|.+... |  -.||||.+....  .....+++|+.+|.+|.|+|      +++||+...+ .-+.||
T Consensus       116 e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~h------liRLyGvVl~-qp~mMV  188 (1039)
T KOG0199|consen  116 ELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPH------LIRLYGVVLD-QPAMMV  188 (1039)
T ss_pred             HHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcc------eeEEeeeecc-chhhHH
Confidence            6899999999999997652 3  479999997542  24577899999999999999      9999999987 678899


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||.+ .|||.+.++......|.....-.++.||+.|                       +.||-+++.+|||+..-|+.|
T Consensus       189 ~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~a-----------------------M~YLeskrlvHRDLAARNlll  245 (1039)
T KOG0199|consen  189 FELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKA-----------------------MQYLESKRLVHRDLAARNLLL  245 (1039)
T ss_pred             hhhcccchHHHHHhhccccceeHHHHHHHHHHHHHH-----------------------HHHHhhhhhhhhhhhhhhhee
Confidence            9999 9999999998544567777777888888887                       999999999999999888877


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       246 a-------------------------------------------------------------------------------  246 (1039)
T KOG0199|consen  246 A-------------------------------------------------------------------------------  246 (1039)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecccccc------ccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHST------IVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~------~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                      ....|||+|||+.+-.......      ..-...|.|||.+..+.|+.++|+|++||++|||.|
T Consensus       247 ----------------sprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFShaSDvWmyGVTiWEMFt  310 (1039)
T KOG0199|consen  247 ----------------SPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSHASDVWMYGVTIWEMFT  310 (1039)
T ss_pred             ----------------ccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccccchhhhhhhhHHhhhc
Confidence                            2356899999987753322211      112346899999999999999999999999999996


Q ss_pred             -ccccccccCCCcee
Q psy2006         310 -GITLMARKTKTKYF  323 (351)
Q Consensus       310 -G~~pf~~~~~~~~~  323 (351)
                       |+.||.|.....++
T Consensus       311 yGEePW~G~~g~qIL  325 (1039)
T KOG0199|consen  311 YGEEPWVGCRGIQIL  325 (1039)
T ss_pred             cCCCCCCCCCHHHHH
Confidence             99999998876665

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.94  E-value=9e-27  Score=213.29  Aligned_cols=190  Identities=22%  Similarity=0.268  Sum_probs=155.2

Q ss_pred             ccccCcccceEEEEEEe---ecCcEEEEEEecchh-----hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCe
Q psy2006           2 CSLNCVASNHVCTNVVY---EVDSVVALKIIKNVE-----KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~~-----~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~   72 (351)
                      +.||+|+||.||++.+.   .+++.||+|++....     ...+....|+++++.+. |++      |+.+++.|...+.
T Consensus         6 ~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~------i~~~~~~~~~~~~   79 (288)
T cd05583           6 RVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPF------LVTLHYAFQTDTK   79 (288)
T ss_pred             EEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcc------hhhhheeeecCCE
Confidence            67999999999999864   367899999997532     22345678999999995 555      9999999999999


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      .|+||||+ +++|.+++....  .+++..++.++.|++.+                       |.|||+.+++|+|+++.
T Consensus        80 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~ql~~~-----------------------l~~lH~~~~~H~dl~p~  134 (288)
T cd05583          80 LHLILDYVNGGELFTHLYQRE--HFTESEVRVYIAEIVLA-----------------------LDHLHQLGIIYRDIKLE  134 (288)
T ss_pred             EEEEEecCCCCcHHHHHhhcC--CcCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCCHH
Confidence            99999999 889999987653  57788888888888888                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.+                                                                          
T Consensus       135 nil~~~--------------------------------------------------------------------------  140 (288)
T cd05583         135 NILLDS--------------------------------------------------------------------------  140 (288)
T ss_pred             HeEECC--------------------------------------------------------------------------
Confidence            988761                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecCC--CCCccceeeeeeeeE
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELG--WAQPCDVWSIGCIIF  305 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~--~~~~~DiwslG~~l~  305 (351)
                                           ...++|+|||++......    .....|++.|++||.+.+..  .+.++|+||+|++++
T Consensus       141 ---------------------~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Dv~slG~il~  199 (288)
T cd05583         141 ---------------------EGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSGGHDKAVDWWSLGVLTF  199 (288)
T ss_pred             ---------------------CCCEEEEECccccccccccccccccccCCccccCHHHhcCCCCCCcchhhhHHHHHHHH
Confidence                                 245889999987642221    12345788999999987654  688999999999999


Q ss_pred             eecccccccccc
Q psy2006         306 ELYLGITLMARK  317 (351)
Q Consensus       306 ~l~tG~~pf~~~  317 (351)
                      ++++|..||...
T Consensus       200 el~tg~~p~~~~  211 (288)
T cd05583         200 ELLTGASPFTVD  211 (288)
T ss_pred             HHHhCCCCcccC
Confidence            999999999643

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.93  E-value=1.5e-26  Score=212.83  Aligned_cols=191  Identities=20%  Similarity=0.252  Sum_probs=154.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||.|+||.||+|.+..+++.||+|.+....  ........|+.++..+. |++      |+++++++......|+|||
T Consensus        21 ~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------i~~~~~~~~~~~~~~~v~e   94 (296)
T cd06618          21 GEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPY------IVKCYGYFITDSDVFICME   94 (296)
T ss_pred             eEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCc------hHhhheeeecCCeEEEEee
Confidence            57999999999999998889999999997532  23345566777776664 444      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeEEee
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~l~D  157 (351)
                      |+++++.+++.... ..+++..+..++.|++.+                       +.|||+ .+++|+|+++.|+.+. 
T Consensus        95 ~~~~~l~~l~~~~~-~~l~~~~~~~i~~~i~~~-----------------------l~~lH~~~~i~H~dl~p~nill~-  149 (296)
T cd06618          95 LMSTCLDKLLKRIQ-GPIPEDILGKMTVAIVKA-----------------------LHYLKEKHGVIHRDVKPSNILLD-  149 (296)
T ss_pred             ccCcCHHHHHHHhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhhCCEecCCCcHHHEEEc-
Confidence            99888888877654 367888888888888888                       999997 5999999999999876 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (296)
T cd06618         150 --------------------------------------------------------------------------------  149 (296)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCC----CCCccceeeeeeeeEeecccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELG----WAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~----~~~~~DiwslG~~l~~l~tG~  311 (351)
                                    ....++|+|||++.....  ......+++.|+|||.+.+..    ++.++|+||||+++|++++|.
T Consensus       150 --------------~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~~g~  215 (296)
T cd06618         150 --------------ASGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKYDIRADVWSLGISLVELATGQ  215 (296)
T ss_pred             --------------CCCCEEECccccchhccCCCcccCCCCCccccCHhhcCCCCCccccccchhHHHHHHHHHHHHhCC
Confidence                          234689999998865322  222345778999999987543    688999999999999999999


Q ss_pred             cccccc
Q psy2006         312 TLMARK  317 (351)
Q Consensus       312 ~pf~~~  317 (351)
                      .||...
T Consensus       216 ~p~~~~  221 (296)
T cd06618         216 FPYKNC  221 (296)
T ss_pred             CCCCcc
Confidence            999763

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>KOG4257|consensus

Probab=99.93  E-value=1.7e-26  Score=218.87  Aligned_cols=197  Identities=19%  Similarity=0.239  Sum_probs=163.5

Q ss_pred             ccccCcccceEEEEEEee--c--CcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYE--V--DSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~--~--~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++||+|.||.||.|+-..  .  .--||||..+.+  .+..+.+..|..+|+.+.|+|      ||+|++++... -+||
T Consensus       395 r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHph------IikLIGv~~e~-P~Wi  467 (974)
T KOG4257|consen  395 RLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPH------IIKLIGVCVEQ-PMWI  467 (974)
T ss_pred             HhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcc------hhheeeeeecc-ceeE
Confidence            579999999999998432  2  237999999863  456788999999999999999      99999999764 6899


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |||.+ -|.|..+++..++ .++......+..||+.+                       |.|||++..+|||+..-||.
T Consensus       468 vmEL~~~GELr~yLq~nk~-sL~l~tL~ly~~Qi~ta-----------------------laYLeSkrfVHRDIAaRNiL  523 (974)
T KOG4257|consen  468 VMELAPLGELREYLQQNKD-SLPLRTLTLYCYQICTA-----------------------LAYLESKRFVHRDIAARNIL  523 (974)
T ss_pred             EEecccchhHHHHHHhccc-cchHHHHHHHHHHHHHH-----------------------HHHHHhhchhhhhhhhhhee
Confidence            99999 8999999999874 56666666666666666                       99999999999999998988


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      ++                                                                              
T Consensus       524 Vs------------------------------------------------------------------------------  525 (974)
T KOG4257|consen  524 VS------------------------------------------------------------------------------  525 (974)
T ss_pred             ec------------------------------------------------------------------------------
Confidence            77                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecccc----ccccccceeeCceeeecCCCCCccceeeeeeeeEeec-c
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY-L  309 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~-t  309 (351)
                                       +...|||+|||+++......    +...-...|||||.+.-+.|+.++|+|.||+.+||++ .
T Consensus       526 -----------------Sp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDVWMFgVCmWEIl~l  588 (974)
T KOG4257|consen  526 -----------------SPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDVWMFGVCMWEILSL  588 (974)
T ss_pred             -----------------CcceeeecccchhhhccccchhhccccccceeecCccccchhcccchhhHHHHHHHHHHHHHh
Confidence                             23468999999987633222    2233346899999999999999999999999999999 4


Q ss_pred             ccccccccCCCceee
Q psy2006         310 GITLMARKTKTKYFY  324 (351)
Q Consensus       310 G~~pf~~~~~~~~~~  324 (351)
                      |.-||.+-.+.+++.
T Consensus       589 GvkPfqgvkNsDVI~  603 (974)
T KOG4257|consen  589 GVKPFQGVKNSDVIG  603 (974)
T ss_pred             cCCccccccccceEE
Confidence            999999999999874

>KOG1035|consensus

Probab=99.93  E-value=7.2e-27  Score=235.52  Aligned_cols=63  Identities=14%  Similarity=0.016  Sum_probs=53.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY   69 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~   69 (351)
                      ++.||+||||.||+++++-+|+.||||.|...  ......+.+|+.+|.+|.|+|      ||+++..|..
T Consensus       484 L~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpN------VVRYysAWVE  548 (1351)
T KOG1035|consen  484 LELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPN------VVRYYSAWVE  548 (1351)
T ss_pred             HHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcc------eeeeehhhhc
Confidence            36799999999999999999999999999754  334456789999999999988      9998877643

>KOG0576|consensus

Probab=99.93  E-value=7.8e-27  Score=222.65  Aligned_cols=284  Identities=17%  Similarity=0.201  Sum_probs=207.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +..+|.|.||.||+|+|+.+++..|+|+++... +.......|+-+++.-+|+|      |+.+++.+.....+|++|||
T Consensus        20 lqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~n------ivay~gsylr~dklwicMEy   93 (829)
T KOG0576|consen   20 LQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPN------IVAYFGSYLRRDKLWICMEY   93 (829)
T ss_pred             eeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcC------hHHHHhhhhhhcCcEEEEEe
Confidence            357999999999999999999999999998754 34456778999999999888      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC------
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD------  152 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n------  152 (351)
                      | ||+|++.=+--+                         ++++.++.+.+++.++||.|||++|.+|||+|-.|      
T Consensus        94 cgggslQdiy~~Tg-------------------------plselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~  148 (829)
T KOG0576|consen   94 CGGGSLQDIYHVTG-------------------------PLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDE  148 (829)
T ss_pred             cCCCcccceeeecc-------------------------cchhHHHHHHHhhhhccchhhhcCCcccccccccceeeccc
Confidence            9 889987533322                         57778888888888888999999999999999655      


Q ss_pred             --eEEeecCCcccCCCC---cccccCCCCccCCccccCC-----------------------------------------
Q psy2006         153 --IRLIDFGSATFDDEH---HSTIVSTRHYRAPERYMAS-----------------------------------------  186 (351)
Q Consensus       153 --i~l~Dfg~s~~~~~~---~~~~~~~~~~~~pe~~~~~-----------------------------------------  186 (351)
                        +++.|||.+-+....   ...++|||.|++||.-...                                         
T Consensus       149 gDvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfdlhpmr~l~LmT  228 (829)
T KOG0576|consen  149 GDVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFDLHPMRALFLMT  228 (829)
T ss_pred             CceeecccCchhhhhhhhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccccchHHHHHHhh
Confidence              588889988663332   4568999999999942211                                         


Q ss_pred             -----------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh--------------------------
Q psy2006         187 -----------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR--------------------------  229 (351)
Q Consensus       187 -----------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~--------------------------  229 (351)
                                 ..--++.+-+|++.+|.++|.+||+++.+|.||+..+.-....                          
T Consensus       229 kS~~qpp~lkDk~kws~~fh~fvK~altknpKkRptaeklL~h~fvs~~l~~rl~~eLLdK~n~P~~~v~~~~d~~~E~~  308 (829)
T KOG0576|consen  229 KSGFQPPTLKDKTKWSEFFHNFVKGALTKNPKKRPTAEKLLQHPFVSQTLSRRLAIELLDKVNNPNPVVRYLEDYDGEDY  308 (829)
T ss_pred             ccCCCCCcccCCccchHHHHHHHHHHhcCCCccCCChhhheeceeeccchhhHHHHHHHHHccCCCCcccccccCCcccc
Confidence                       0011244668999999999999999999999987643211000                          


Q ss_pred             ------hc---------------------ccchhhhhhccchhhhhh--------hccccceeeeccCCcceeccc--cc
Q psy2006         230 ------VH---------------------AQTQADRILSSVSSLVMR--------RVRRCDIRLIDFGSATFDDEH--HS  272 (351)
Q Consensus       230 ------~~---------------------~~~~~~~~~~~~~~~~~~--------~~~~~~vkl~dfg~~~~~~~~--~~  272 (351)
                            .+                     .....++.+++.+.+...        ......++..+|+.....+..  .+
T Consensus       309 ~~i~~~i~s~~rs~~~~~~~se~~~~~~~~~~~~r~et~~l~~l~~~~~~~~d~~l~s~~~~~~~~~~v~~~L~~~~~~~  388 (829)
T KOG0576|consen  309 LWIPMRICSTGRSSALEMTVSEIALEQYQFAYPLRKETRPLAELHSSYKVHRDNILGSEEEVKLLDFAVPPQLTRTMKPR  388 (829)
T ss_pred             cchhhhhhcCCccccccCChhhHhhhhhhhhhhhhhhcccccccccccccCcccccccccccccccccCCcccCcccccc
Confidence                  00                     000001122222221111        011234567777766543333  56


Q ss_pred             cccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         273 TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       273 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                      +..+++.+++||+.....+....|.|+++.-..++.-|.+|-.
T Consensus       389 t~~~~~~~~~pev~~~~~~~~~p~~~~~~~~~~~~ap~~pPr~  431 (829)
T KOG0576|consen  389 TAIGTPEPLAPEVIQENTIDGCPDSGSLAVSAIQMAPGLPPRS  431 (829)
T ss_pred             cCCCCCCCCCchhhcccccccCCCccCCCcchhhcCCCCCCCC
Confidence            7889999999999988889889999999986667776766643

>KOG0668|consensus

Probab=99.93  E-value=4.1e-27  Score=199.01  Aligned_cols=193  Identities=21%  Similarity=0.347  Sum_probs=153.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC--eEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--HMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~--~~~lV~E~   79 (351)
                      +++|+|-|+.||-|++..+++.++||+++..  ..+.+.+|+.||+.|+     |..||++|+|...++.  ...||+||
T Consensus        44 rk~GRGKYSEVFeg~~~~~~eK~ViKiLKPV--kkkKIkREikIL~nL~-----gg~NIi~L~DiV~Dp~SktpaLiFE~  116 (338)
T KOG0668|consen   44 RKVGRGKYSEVFEGINITNNEKCVIKILKPV--KKKKIKREIKILQNLR-----GGPNIIKLLDIVKDPESKTPSLIFEY  116 (338)
T ss_pred             HHHcCccHhhHhcccccCCCceEEEeeechH--HHHHHHHHHHHHHhcc-----CCCCeeehhhhhcCccccCchhHhhh
Confidence            6899999999999999999999999999743  2466789999999997     3333999999998765  78899999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + ..+...+-..                            ++.-+++.++++++.||+|||++||+|||+||-|+++.  
T Consensus       117 v~n~Dfk~ly~t----------------------------l~d~dIryY~~elLkALdyCHS~GImHRDVKPhNvmId--  166 (338)
T KOG0668|consen  117 VNNTDFKQLYPT----------------------------LTDYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVMID--  166 (338)
T ss_pred             hccccHHHHhhh----------------------------hchhhHHHHHHHHHHHHhHHHhcCcccccCCcceeeec--
Confidence            9 5555544322                            34456777777777779999999999999999999876  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                               +                                                                      
T Consensus       167 ---------h----------------------------------------------------------------------  167 (338)
T KOG0668|consen  167 ---------H----------------------------------------------------------------------  167 (338)
T ss_pred             ---------h----------------------------------------------------------------------
Confidence                     1                                                                      


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecccc--ccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccccccc-
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITLM-  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~--~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~pf-  314 (351)
                                   ....++|+|+|++.+.+...  +-.+.+..|..||++... .+..+.|+|||||++..|+..+.|| 
T Consensus       168 -------------~~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~GcmlA~miFrkepFF  234 (338)
T KOG0668|consen  168 -------------ELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFF  234 (338)
T ss_pred             -------------hhceeeeeecchHhhcCCCceeeeeeehhhcCCchheeechhccccHHHHHHHHHHHHHHhccCccc
Confidence                         24578999999998754332  345667788999988764 5688999999999999999866665 


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      .|.+..+.+
T Consensus       235 hG~dN~DQL  243 (338)
T KOG0668|consen  235 HGHDNYDQL  243 (338)
T ss_pred             CCCCCHHHH
Confidence            677666544

>KOG1167|consensus

Probab=99.93  E-value=4e-26  Score=208.13  Aligned_cols=227  Identities=21%  Similarity=0.245  Sum_probs=152.5

Q ss_pred             CccccCcccceEEEEEEee---cCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYE---VDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~---~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.+||+|.|++||+|.++.   .+++||+|.+... ....++..|+++|..+.     |+.||+.+.+.|..+++.++||
T Consensus        41 v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~t-s~p~ri~~El~~L~~~g-----G~~ni~~~~~~~rnnd~v~ivl  114 (418)
T KOG1167|consen   41 VNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT-SSPSRILNELEMLYRLG-----GSDNIIKLNGCFRNNDQVAIVL  114 (418)
T ss_pred             hccccccchhhhhhhhHhhhccccceEeeeecccc-cCchHHHHHHHHHHHhc-----cchhhhcchhhhccCCeeEEEe
Confidence            3689999999999999988   7899999999763 33567889999999997     4446999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe---
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI---  153 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni---  153 (351)
                      ||. ..+..++...     ++...                       ++.|++.++.||.++|.+||+|||+||+|+   
T Consensus       115 p~~~H~~f~~l~~~-----l~~~~-----------------------i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n  166 (418)
T KOG1167|consen  115 PYFEHDRFRDLYRS-----LSLAE-----------------------IRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYN  166 (418)
T ss_pred             cccCccCHHHHHhc-----CCHHH-----------------------HHHHHHHHHHHhhhhhccCccccCCCccccccc
Confidence            999 5566666543     33444                       444555555559999999999999999996   


Q ss_pred             ------EEeecCCccc-CCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         154 ------RLIDFGSATF-DDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       154 ------~l~Dfg~s~~-~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                            .|+|||+|.. ........+..  |..|                              .+...          .
T Consensus       167 ~~t~rg~LvDFgLA~~~d~~~~~~~s~~--~~~~------------------------------~~~~~----------~  204 (418)
T KOG1167|consen  167 RRTQRGVLVDFGLAQRYDGYQQTEHSRS--YSGR------------------------------HATPA----------M  204 (418)
T ss_pred             cccCCceEEechhHHHHHhhhhhhhhhh--hhcc------------------------------cCCcc----------c
Confidence                  8999999963 11111110000  0000                              00000          0


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCC-CCccceeeeeeeeE
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIF  305 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~  305 (351)
                      ....+.+..+           ......+..+.+    +...........||++|+|||++..-+- ++++|+||.|+++.
T Consensus       205 g~~~~~~~~~-----------~~~~p~g~~~~~----~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~L  269 (418)
T KOG1167|consen  205 GKDVHCQSVA-----------TASKPAGYYRRC----NDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILL  269 (418)
T ss_pred             cCcccccccc-----------cccCCCCceecc----CCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceee
Confidence            0000000000           000011111111    0112223346789999999999987654 88999999999999


Q ss_pred             eeccccccccccC
Q psy2006         306 ELYLGITLMARKT  318 (351)
Q Consensus       306 ~l~tG~~pf~~~~  318 (351)
                      .++++.+||-...
T Consensus       270 slls~~~PFf~a~  282 (418)
T KOG1167|consen  270 SLLSRRYPFFKAK  282 (418)
T ss_pred             hhhccccccccCc
Confidence            9999999996554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=9.2e-26  Score=239.17  Aligned_cols=182  Identities=15%  Similarity=0.177  Sum_probs=145.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      +.||+|+||.||+|.++.+++.||+|.+.....   ....|+++|++++|+|      |+++++++...+..|+||||+ 
T Consensus       696 ~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~---~~~~~~~~l~~l~Hpn------Iv~~~~~~~~~~~~~lv~Ey~~  766 (968)
T PLN00113        696 NVISRGKKGASYKGKSIKNGMQFVVKEINDVNS---IPSSEIADMGKLQHPN------IVKLIGLCRSEKGAYLIHEYIE  766 (968)
T ss_pred             cEEccCCCeeEEEEEECCCCcEEEEEEccCCcc---ccHHHHHHHhhCCCCC------cceEEEEEEcCCCCEEEEeCCC
Confidence            469999999999999988999999999975322   2235789999999888      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccc---cccccccccCCCCeEEee
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN---KKKREVRRVRRCDIRLID  157 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH---~~~i~h~d~k~~ni~l~D  157 (351)
                      +++|.++++.     +++..+..++.|++.|                       ++|+|   +.+++|||+|+.|+.+.+
T Consensus       767 ~g~L~~~l~~-----l~~~~~~~i~~~ia~~-----------------------L~yLH~~~~~~iiH~dlkp~Nil~~~  818 (968)
T PLN00113        767 GKNLSEVLRN-----LSWERRRKIAIGIAKA-----------------------LRFLHCRCSPAVVVGNLSPEKIIIDG  818 (968)
T ss_pred             CCcHHHHHhc-----CCHHHHHHHHHHHHHH-----------------------HHHhccCCCCCeecCCCCHHhEEECC
Confidence            8999999853     5677777777877777                       99999   679999999999998752


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                      -+                                                                              
T Consensus       819 ~~------------------------------------------------------------------------------  820 (968)
T PLN00113        819 KD------------------------------------------------------------------------------  820 (968)
T ss_pred             CC------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                       ..++. ++...... ......+|+.|+|||++.+..++.++||||+||++||++||+.||+..
T Consensus       821 -----------------~~~~~-~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~sDv~S~Gvvl~el~tg~~p~~~~  881 (968)
T PLN00113        821 -----------------EPHLR-LSLPGLLC-TDTKCFISSAYVAPETRETKDITEKSDIYGFGLILIELLTGKSPADAE  881 (968)
T ss_pred             -----------------ceEEE-eccccccc-cCCCccccccccCcccccCCCCCcccchhhHHHHHHHHHhCCCCCCcc
Confidence                             11111 22221111 112236789999999999889999999999999999999999999643

>KOG0196|consensus

Probab=99.92  E-value=9.5e-26  Score=218.51  Aligned_cols=198  Identities=18%  Similarity=0.231  Sum_probs=165.3

Q ss_pred             ccccCcccceEEEEEEeecC---cEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVD---SVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~---~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||.|-||.||+|+.+..+   ..||||.++..  ++.+..++.|+.||-+++|+|      |++|-++.+...-++||
T Consensus       635 ~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPN------IIrLEGVVTks~PvMIi  708 (996)
T KOG0196|consen  635 KVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPN------IIRLEGVVTKSKPVMII  708 (996)
T ss_pred             EEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCc------EEEEEEEEecCceeEEE
Confidence            35999999999999988655   58999999864  455678899999999999988      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      .||| .|+|..+++.... .|..-+...+.+.|+.|                       +.||-+++.+|||+..-||.+
T Consensus       709 TEyMENGsLDsFLR~~DG-qftviQLVgMLrGIAsG-----------------------MkYLsdm~YVHRDLAARNILV  764 (996)
T KOG0196|consen  709 TEYMENGSLDSFLRQNDG-QFTVIQLVGMLRGIASG-----------------------MKYLSDMNYVHRDLAARNILV  764 (996)
T ss_pred             hhhhhCCcHHHHHhhcCC-ceEeehHHHHHHHHHHH-----------------------hHHHhhcCchhhhhhhhheee
Confidence            9999 9999999998863 46666666666666666                       999999999999998888765


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      -                                                                               
T Consensus       765 N-------------------------------------------------------------------------------  765 (996)
T KOG0196|consen  765 N-------------------------------------------------------------------------------  765 (996)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            4                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecccc---ccccc---cceeeCceeeecCCCCCccceeeeeeeeEeec-
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH---STIVS---TRHYRAPEVILELGWAQPCDVWSIGCIIFELY-  308 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~---~~~~g---t~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~-  308 (351)
                                      ..-.+|++|||+++......   .+..|   ...|+|||.|..+.++.++|+||+|+++||.+ 
T Consensus       766 ----------------snLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAPEAIa~RKFTsASDVWSyGIVmWEVmS  829 (996)
T KOG0196|consen  766 ----------------SNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAPEAIAYRKFTSASDVWSYGIVMWEVMS  829 (996)
T ss_pred             ----------------cceEEEeccccceeecccCCCccccccCCccceeecChhHhhhcccCchhhccccceEEEEecc
Confidence                            23467899999987642211   11111   35799999999999999999999999999998 


Q ss_pred             cccccccccCCCceee
Q psy2006         309 LGITLMARKTKTKYFY  324 (351)
Q Consensus       309 tG~~pf~~~~~~~~~~  324 (351)
                      .|+.|+...+++|++-
T Consensus       830 yGERPYWdmSNQdVIk  845 (996)
T KOG0196|consen  830 YGERPYWDMSNQDVIK  845 (996)
T ss_pred             cCCCcccccchHHHHH
Confidence            5999999999998873

>KOG0665|consensus

Probab=99.92  E-value=1.2e-26  Score=204.78  Aligned_cols=194  Identities=23%  Similarity=0.430  Sum_probs=162.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------   71 (351)
                      ++++|.|+- .|.-|.|.-.++.||+|.+...   ....+++.+|..+|..+.|+|      |++++.+|+-..      
T Consensus        22 L~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~n------ii~l~n~ftP~~~l~~~~   94 (369)
T KOG0665|consen   22 LKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKN------IISLLNVFTPQKTLEEFQ   94 (369)
T ss_pred             ecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccc------eeeeeeccCccccHHHHH
Confidence            467888888 7889999999999999999653   234467889999999999888      999999998665      


Q ss_pred             eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          72 HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        72 ~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      ..|+|||++..+|.+.+...    +.-..++.+..|.+-|                       +.++|+.||+|||+||+
T Consensus        95 e~y~v~e~m~~nl~~vi~~e----lDH~tis~i~yq~~~~-----------------------ik~lhs~~IihRdLkPs  147 (369)
T KOG0665|consen   95 EVYLVMELMDANLCQVILME----LDHETISYILYQMLCG-----------------------IKHLHSAGIIHRDLKPS  147 (369)
T ss_pred             hHHHHHHhhhhHHHHHHHHh----cchHHHHHHHHHHHHH-----------------------HHHHHhcceeecccCcc
Confidence            79999999999999988732    3444555555555555                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+-                                                                           
T Consensus       148 nivv~---------------------------------------------------------------------------  152 (369)
T KOG0665|consen  148 NIVVN---------------------------------------------------------------------------  152 (369)
T ss_pred             cceec---------------------------------------------------------------------------
Confidence            98775                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                          ..+.+||.|||++.....  ..+..+.|..|+|||++.+.++...+||||+||++.||++
T Consensus       153 --------------------~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~~~ke~vdiwSvGci~gEli~  212 (369)
T KOG0665|consen  153 --------------------SDCTLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELIL  212 (369)
T ss_pred             --------------------chhheeeccchhhcccCcccccCchhheeeccCchheeccCCcccchhhhhhhHHHHHhh
Confidence                                357899999999987443  4567888999999999999999999999999999999999


Q ss_pred             ccccccccCCCcee
Q psy2006         310 GITLMARKTKTKYF  323 (351)
Q Consensus       310 G~~pf~~~~~~~~~  323 (351)
                      |..+|.|.+.-+.+
T Consensus       213 ~~Vlf~g~d~idQ~  226 (369)
T KOG0665|consen  213 GTVLFPGKDHIDQW  226 (369)
T ss_pred             ceEEecCchHHHHH
Confidence            99999988766554

>KOG1094|consensus

Probab=99.92  E-value=5e-26  Score=214.32  Aligned_cols=199  Identities=18%  Similarity=0.182  Sum_probs=163.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||+|.||.|-+|.. ..+..||+|.++...  ..+..+.+|+++|.+|+|+|      |+.|++++..++-+|+|+||
T Consensus       544 ekiGeGqFGEVhLCev-eg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPN------IveLvGVC~~DePicmI~EY  616 (807)
T KOG1094|consen  544 EKIGEGQFGEVHLCEV-EGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPN------IVELLGVCVQDDPLCMITEY  616 (807)
T ss_pred             hhhcCcccceeEEEEe-cCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCC------eeEEEeeeecCCchHHHHHH
Confidence            7899999999999995 456999999998542  34578899999999998888      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + .|+|.+++.+...-........+++.||+.|                       +.||-+-+++|||+.+.|+.+.  
T Consensus       617 mEnGDLnqFl~aheapt~~t~~~vsi~tqiasg-----------------------maYLes~nfVHrd~a~rNcLv~--  671 (807)
T KOG1094|consen  617 MENGDLNQFLSAHELPTAETAPGVSICTQIASG-----------------------MAYLESLNFVHRDLATRNCLVD--  671 (807)
T ss_pred             HhcCcHHHHHHhccCcccccchhHHHHHHHHHH-----------------------HHHHHhhchhhccccccceeec--
Confidence            9 9999999988741112223333455555555                       9999999999999999998776  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       672 --------------------------------------------------------------------------------  671 (807)
T KOG1094|consen  672 --------------------------------------------------------------------------------  671 (807)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCccee-c----cccccccccceeeCceeeecCCCCCccceeeeeeeeEeec--ccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFD-D----EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY--LGI  311 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~--tG~  311 (351)
                                   ..+.+||+|||+++.. .    ......+-...|||+|.+.-+.++.++|+|+||+++||+.  +.+
T Consensus       672 -------------~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFttaSDvWafgvTlwE~~~~C~e  738 (807)
T KOG1094|consen  672 -------------GEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFTTASDVWAFGVTLWEVFMLCRE  738 (807)
T ss_pred             -------------CcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhccccchhhhhhhHHHHHHHHHHHhh
Confidence                         3578999999998742 1    1223345567899999999999999999999999999987  589


Q ss_pred             ccccccCCCceeee
Q psy2006         312 TLMARKTKTKYFYH  325 (351)
Q Consensus       312 ~pf~~~~~~~~~~~  325 (351)
                      -||...+++++..+
T Consensus       739 ~Py~~lt~e~vven  752 (807)
T KOG1094|consen  739 QPYSQLTDEQVVEN  752 (807)
T ss_pred             CchhhhhHHHHHHh
Confidence            99999988877653

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.91  E-value=1.5e-24  Score=190.29  Aligned_cols=194  Identities=27%  Similarity=0.359  Sum_probs=162.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh--hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK--YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~--~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||.|++|+||+|.+..+++.+|+|.+.....  ..+.+.+|++.++.+.|++      ++++++++......++++|+
T Consensus         5 ~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~------i~~~~~~~~~~~~~~~v~e~   78 (225)
T smart00221        5 KKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPN------IVKLYGVFEDPEPLYLVMEY   78 (225)
T ss_pred             eEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCC------hhhheeeeecCCceEEEEec
Confidence            579999999999999988899999999986432  4567888999999998776      99999999998999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++..... .+++..+..++.+++.+                       +.++|+.++.|+|+++.|+.+.+ 
T Consensus        79 ~~~~~L~~~~~~~~~-~~~~~~~~~~~~~l~~~-----------------------l~~lh~~~i~h~di~~~ni~v~~-  133 (225)
T smart00221       79 CEGGDLFDYLRKKGG-KLSEEEARFYLRQILEA-----------------------LEYLHSLGIVHRDLKPENILLGM-  133 (225)
T ss_pred             cCCCCHHHHHHhccc-CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHEEEcC-
Confidence            9 6699999987642 16777777777777777                       99999999999999999988762 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       134 --------------------------------------------------------------------------------  133 (225)
T smart00221      134 --------------------------------------------------------------------------------  133 (225)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceee-ecCCCCCccceeeeeeeeEeecccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVI-LELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~-~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ...++|+|||.+......    .....++..|++||.. ...+++.++|+|+||++++++++|..|
T Consensus       134 --------------~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~Dv~~lG~~~~~l~~g~~p  199 (225)
T smart00221      134 --------------DGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGEAVDIWSLGVILYELLWGPEP  199 (225)
T ss_pred             --------------CCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCchhhHHHHHHHHHHHHHCCCC
Confidence                          246899999988764332    2445677889999998 566778899999999999999999999


Q ss_pred             ccc-cCCC
Q psy2006         314 MAR-KTKT  320 (351)
Q Consensus       314 f~~-~~~~  320 (351)
                      |+. ....
T Consensus       200 f~~~~~~~  207 (225)
T smart00221      200 FSGEGEFT  207 (225)
T ss_pred             ccccchhH
Confidence            977 4433

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.90  E-value=1.4e-24  Score=215.86  Aligned_cols=205  Identities=16%  Similarity=0.192  Sum_probs=132.4

Q ss_pred             ccccCcccceEEEEEEeec----CcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeee------EeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYEV----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDW------FDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~----~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~------f~~~~   71 (351)
                      ++||+|+||+||+|.+..+    ++.||+|.+....      ..|+.+...+.+..++   ++..+...      .....
T Consensus       138 ~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~------~~e~~~~e~l~~~~~~---~~~~~~~~~~~~~~~~~~~  208 (566)
T PLN03225        138 KKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYG------AVEIWMNERVRRACPN---SCADFVYGFLEPVSSKKED  208 (566)
T ss_pred             EEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccc------hhHHHHHHHHHhhchh---hHHHHHHhhhcccccccCC
Confidence            5799999999999999888    8999999986421      1122222222221111   02111111      23455


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCCCCCch-HHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccC
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNYLPYSL-DQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR  149 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~~~~~~-~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k  149 (351)
                      .++||+||+ +++|.+++..... .+.. .....-...+.     .........+..++.|++.||.|||+++|+|||+|
T Consensus       209 ~~~LV~ey~~~gsL~~~l~~~~~-~~~v~~~l~~~~~~l~-----~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLK  282 (566)
T PLN03225        209 EYWLVWRYEGESTLADLMQSKEF-PYNVEPYLLGKVQDLP-----KGLERENKIIQTIMRQILFALDGLHSTGIVHRDVK  282 (566)
T ss_pred             ceEEEEEecCCCcHHHHHHhcCC-chhHHHHhccchhhcc-----ccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCC
Confidence            899999999 8899999986531 1110 00000000000     00122344566777888888999999999999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      +.||.+.+                                                                        
T Consensus       283 P~NILl~~------------------------------------------------------------------------  290 (566)
T PLN03225        283 PQNIIFSE------------------------------------------------------------------------  290 (566)
T ss_pred             HHHEEEeC------------------------------------------------------------------------
Confidence            99998861                                                                        


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceec----cccccccccceeeCceeeecC----------------
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD----EHHSTIVSTRHYRAPEVILEL----------------  289 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~----~~~~~~~gt~~y~aPE~~~~~----------------  289 (351)
                                            ....+||+|||++....    .......+++.|+|||.+...                
T Consensus       291 ----------------------~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~s  348 (566)
T PLN03225        291 ----------------------GSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALS  348 (566)
T ss_pred             ----------------------CCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCcccccccccc
Confidence                                  12468999999986422    122456788999999965422                


Q ss_pred             ------CCCCccceeeeeeeeEeecccccccc
Q psy2006         290 ------GWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       290 ------~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                            .+..++||||+||++|+|+++..+++
T Consensus       349 p~l~~~~~~~k~DVwSlGviL~el~~~~~~~~  380 (566)
T PLN03225        349 PVLWQLNLPDRFDIYSAGLIFLQMAFPNLRSD  380 (566)
T ss_pred             chhccccCCCCcccHHHHHHHHHHHhCcCCCc
Confidence                  23345699999999999998766543

>KOG1025|consensus

Probab=99.90  E-value=9.2e-25  Score=212.55  Aligned_cols=195  Identities=16%  Similarity=0.203  Sum_probs=159.2

Q ss_pred             ccccCcccceEEEEEEeecC----cEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVD----SVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~----~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++||.|+||+||+|.+...+    -+||||++....  ....++.+|+-+|.+|.|+|      +++|+++...+. +-|
T Consensus       702 kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpn------l~RLLgvc~~s~-~ql  774 (1177)
T KOG1025|consen  702 KVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPN------LLRLLGVCMLST-LQL  774 (1177)
T ss_pred             ceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCch------HHHHhhhcccch-HHH
Confidence            57999999999999986544    489999997543  34678899999999999988      999999998776 889


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |++++ +|+|.|+++..+. .+-......+..||+.|                       +.|||.++++|||+-.-||.
T Consensus       775 vtq~mP~G~LlDyvr~hr~-~igsq~lLnw~~QIAkg-----------------------M~YLe~qrlVHrdLaaRNVL  830 (1177)
T KOG1025|consen  775 VTQLMPLGCLLDYVREHRD-NIGSQDLLNWCYQIAKG-----------------------MKYLEEQRLVHRDLAARNVL  830 (1177)
T ss_pred             HHHhcccchHHHHHHHhhc-cccHHHHHHHHHHHHHH-----------------------HHHHHhcchhhhhhhhhhee
Confidence            99999 9999999998752 45555556666666666                       99999999999999988887


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       831 Vk------------------------------------------------------------------------------  832 (1177)
T KOG1025|consen  831 VK------------------------------------------------------------------------------  832 (1177)
T ss_pred             ec------------------------------------------------------------------------------
Confidence            65                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecccc--cc---ccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH--ST---IVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~--~~---~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                       ....+|++|||+++......  ..   ..-.+.|||=|.+....|+.++||||+||++||++|
T Consensus       833 -----------------sP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thqSDVWsfGVtiWElmT  895 (1177)
T KOG1025|consen  833 -----------------SPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQSDVWSFGVTIWELMT  895 (1177)
T ss_pred             -----------------CCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCchhhhhhhhhhHHHHHh
Confidence                             23578999999987643222  11   222467899999999999999999999999999997


Q ss_pred             -ccccccccCCCce
Q psy2006         310 -GITLMARKTKTKY  322 (351)
Q Consensus       310 -G~~pf~~~~~~~~  322 (351)
                       |..|+.+...+++
T Consensus       896 FGa~Py~gi~~~eI  909 (1177)
T KOG1025|consen  896 FGAKPYDGIPAEEI  909 (1177)
T ss_pred             cCCCccCCCCHHHh
Confidence             9999999887775

>KOG3653|consensus

Probab=99.89  E-value=3.3e-24  Score=197.96  Aligned_cols=189  Identities=19%  Similarity=0.188  Sum_probs=147.0

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC----eEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG----HMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~----~~~lV   76 (351)
                      ++.||+|.||.||+|.  .+++.||||++..  ...+.+..|-+|.+...-.|+|    |++.+.+-....    .++||
T Consensus       215 ~eli~~Grfg~V~Kaq--L~~~~VAVKifp~--~~kqs~~~Ek~Iy~lp~m~h~n----Il~Fi~~ekr~t~~~~eywLV  286 (534)
T KOG3653|consen  215 LELIGRGRFGCVWKAQ--LDNRLVAVKIFPE--QEKQSFQNEKNIYSLPGMKHEN----ILQFIGAEKRGTADRMEYWLV  286 (534)
T ss_pred             HHHhhcCccceeehhh--ccCceeEEEecCH--HHHHHHHhHHHHHhccCccchh----HHHhhchhccCCccccceeEE
Confidence            3679999999999999  6789999999985  3356777888888775544444    999888776555    89999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc---------cccccc
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK---------KKREVR  146 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~---------~~i~h~  146 (351)
                      +||. .|||.++++..-   .+.....+++..++.|                       |+|||+         ..|.||
T Consensus       287 t~fh~kGsL~dyL~~nt---isw~~~cria~SmarG-----------------------La~LHee~p~~d~~Kp~IaHR  340 (534)
T KOG3653|consen  287 TEFHPKGSLCDYLKANT---ISWNSLCRIAESMARG-----------------------LAHLHEELPRGDHHKPPIAHR  340 (534)
T ss_pred             eeeccCCcHHHHHHhcc---ccHHHHHHHHHHHHHH-----------------------HHHhcccCCcCCCCCCccccc
Confidence            9999 999999999974   5666777777777776                       999997         348899


Q ss_pred             ccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         147 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      |+|..||.+-                                                                      
T Consensus       341 DlkSkNVLvK----------------------------------------------------------------------  350 (534)
T KOG3653|consen  341 DLKSKNVLVK----------------------------------------------------------------------  350 (534)
T ss_pred             cccccceEEc----------------------------------------------------------------------
Confidence            9999998765                                                                      


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeeecC-CCC-----Ccc
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVILEL-GWA-----QPC  295 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~~~-~~~-----~~~  295 (351)
                                               ....+.|+|||++....     ......+||..|||||++.+. ++.     .+.
T Consensus       351 -------------------------~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMAPEvLEgainl~d~~Afkr~  405 (534)
T KOG3653|consen  351 -------------------------NDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMAPEVLEGAINLQDRDAFKRI  405 (534)
T ss_pred             -------------------------cCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcCHHHHhhhcccccHHHHHHH
Confidence                                     23457899999986522     122337899999999999764 333     346


Q ss_pred             ceeeeeeeeEeeccccccccccC
Q psy2006         296 DVWSIGCIIFELYLGITLMARKT  318 (351)
Q Consensus       296 DiwslG~~l~~l~tG~~pf~~~~  318 (351)
                      ||||+|.++||+++.-..+....
T Consensus       406 DvYamgLVLWEi~SRC~~~~~~~  428 (534)
T KOG3653|consen  406 DVYAMGLVLWEIASRCTDADPGP  428 (534)
T ss_pred             HHHHHHHHHHHHHhhcccccCCC
Confidence            99999999999998776665433

>KOG1027|consensus

Probab=99.89  E-value=9.7e-24  Score=206.20  Aligned_cols=196  Identities=19%  Similarity=0.199  Sum_probs=151.8

Q ss_pred             cccCcccce-EEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           3 SLNCVASNH-VCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         3 ~iG~G~~g~-V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      .+|.|+.|+ ||+|.  ..+|.||||.+..  .....+.+||+.|+.-. .|+|    ||+.+..=.++.++||+.|.|.
T Consensus       516 ilG~Gs~Gt~Vf~G~--ye~R~VAVKrll~--e~~~~A~rEi~lL~eSD-~H~N----viRyyc~E~d~qF~YIalELC~  586 (903)
T KOG1027|consen  516 ILGYGSNGTVVFRGV--YEGREVAVKRLLE--EFFDFAQREIQLLQESD-EHPN----VIRYYCSEQDRQFLYIALELCA  586 (903)
T ss_pred             HcccCCCCcEEEEEe--eCCceehHHHHhh--HhHHHHHHHHHHHHhcc-CCCc----eEEEEeeccCCceEEEEehHhh
Confidence            478888886 67999  8899999999974  34567889999998864 3444    9999999888899999999999


Q ss_pred             CCHHHHHHhc-CCCCCch-HHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          82 LSVFDFLKEN-NYLPYSL-DQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        82 ~sL~~~l~~~-~~~~~~~-~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                      .+|.+++... ....... -.++.++.|++.                       ||++||+-+++|||+||.||.|+   
T Consensus       587 ~sL~dlie~~~~d~~~~~~i~~~~~l~q~~~-----------------------GlaHLHsl~iVHRDLkPQNILI~---  640 (903)
T KOG1027|consen  587 CSLQDLIESSGLDVEMQSDIDPISVLSQIAS-----------------------GLAHLHSLKIVHRDLKPQNILIS---  640 (903)
T ss_pred             hhHHHHHhccccchhhcccccHHHHHHHHHH-----------------------HHHHHHhcccccccCCCceEEEE---
Confidence            9999999884 1111111 223444444444                       59999999999999999999987   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                              ...                                                                     
T Consensus       641 --------~~~---------------------------------------------------------------------  643 (903)
T KOG1027|consen  641 --------VPS---------------------------------------------------------------------  643 (903)
T ss_pred             --------ccC---------------------------------------------------------------------
Confidence                    000                                                                     


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc-cc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG-IT  312 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG-~~  312 (351)
                                ....-.++|+|||+|+....      ..+...||.+|.|||++....-..++||+|+||++|+.++| ..
T Consensus       644 ----------~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~L~~~~~~~avDiFslGCvfyYvltgG~H  713 (903)
T KOG1027|consen  644 ----------ADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQLREDRKTQAVDIFSLGCVFYYVLTGGSH  713 (903)
T ss_pred             ----------CCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHHHhccccCcccchhhcCceEEEEecCCcc
Confidence                      00134689999999986322      24567899999999999888778899999999999999985 99


Q ss_pred             cccccCCC
Q psy2006         313 LMARKTKT  320 (351)
Q Consensus       313 pf~~~~~~  320 (351)
                      ||-..-..
T Consensus       714 pFGd~~~R  721 (903)
T KOG1027|consen  714 PFGDSLER  721 (903)
T ss_pred             CCCchHHh
Confidence            99665444

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.89  E-value=1.4e-23  Score=185.71  Aligned_cols=184  Identities=30%  Similarity=0.451  Sum_probs=156.6

Q ss_pred             ccceEEEEEEeecCcEEEEEEecchhhh--hHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-CCCH
Q psy2006           8 ASNHVCTNVVYEVDSVVALKIIKNVEKY--REAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-GLSV   84 (351)
Q Consensus         8 ~~g~V~~~~~~~~~~~vAiK~~~~~~~~--~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-g~sL   84 (351)
                      +||.||+|.+..+++.+|+|++......  .+.+.+|+++++.++|++      |+++++.+......++|+|++ +++|
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~------i~~~~~~~~~~~~~~l~~e~~~~~~L   74 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPN------IVRLYDVFEDEDKLYLVMEYCDGGDL   74 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCc------HHHHHhheeeCCEEEEEEeCCCCCCH
Confidence            5899999999888999999999764321  467889999999998777      999999999999999999999 6699


Q ss_pred             HHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC
Q psy2006          85 FDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD  164 (351)
Q Consensus        85 ~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~  164 (351)
                      .+++.....  ++...+..++.+++.+                       +.+||+.+++|+|+++.|+.+.+       
T Consensus        75 ~~~~~~~~~--~~~~~~~~~~~~l~~~-----------------------l~~lh~~~i~h~~i~~~ni~~~~-------  122 (244)
T smart00220       75 FDLLKKRGR--LSEDEARFYARQILSA-----------------------LEYLHSNGIIHRDLKPENILLDE-------  122 (244)
T ss_pred             HHHHHhccC--CCHHHHHHHHHHHHHH-----------------------HHHHHHcCeecCCcCHHHeEECC-------
Confidence            999887642  6777777777777777                       99999999999999999998762       


Q ss_pred             CCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccch
Q psy2006         165 DEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVS  244 (351)
Q Consensus       165 ~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (351)
                                                                                                      
T Consensus       123 --------------------------------------------------------------------------------  122 (244)
T smart00220      123 --------------------------------------------------------------------------------  122 (244)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         245 SLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       245 ~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                              ...++++|||.+.....  ......++..|++||...+..++.++|+|++|++++++++|..||...
T Consensus       123 --------~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Di~slG~~l~~l~~~~~p~~~~  189 (244)
T smart00220      123 --------DGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLGKGYGKAVDVWSLGVILYELLTGKPPFPGD  189 (244)
T ss_pred             --------CCcEEEccccceeeeccccccccccCCcCCCCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence                    34689999999876443  334566788999999998888888999999999999999999999773

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.89  E-value=2.3e-23  Score=202.88  Aligned_cols=215  Identities=13%  Similarity=0.152  Sum_probs=143.3

Q ss_pred             ccccCcccceEEEEEEe----------------ecCcEEEEEEecchhh-h--------------hHHHHHHHHHHHHhC
Q psy2006           2 CSLNCVASNHVCTNVVY----------------EVDSVVALKIIKNVEK-Y--------------REAARLEINALQKIG   50 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~----------------~~~~~vAiK~~~~~~~-~--------------~~~~~~E~~~l~~l~   50 (351)
                      ++||+|+||+||+|.+.                ..++.||||.+..... .              .+....|+.++.++.
T Consensus       151 ~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE~~~l~~l~  230 (507)
T PLN03224        151 DKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVEAYMCAKIK  230 (507)
T ss_pred             eEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHHHHHHHHhh
Confidence            67999999999999742                3457899999864321 1              122345777777776


Q ss_pred             CCCCCCCcceeeeeeeEee--------CCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHH---HHHhhhcCCCC
Q psy2006          51 EKDPNGRHLCVKMLDWFDY--------HGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQ---LIYAKENNYLP  118 (351)
Q Consensus        51 h~~~~g~~~Iv~l~~~f~~--------~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~q---l~~~~~~~~~~  118 (351)
                      |.+ ..+.+++.++++|..        .+..|||+||+ +++|.++++.... .++... ..++..   +...  .....
T Consensus       231 ~~~-l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~-~~~~~L-~e~l~~g~~l~~~--~~~~~  305 (507)
T PLN03224        231 RNP-IAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLG-PFPGCL-EEFMMAGKKIPDN--MPQDK  305 (507)
T ss_pred             ccc-chhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccC-CCcchH-HHHHhcCCchhhh--ccccc
Confidence            522 233346777777764        34789999999 8999999986421 222111 111000   0000  00113


Q ss_pred             CchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHH
Q psy2006         119 YSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLI  198 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i  198 (351)
                      .++..+..++.|++.+|.|+|+++++|||+|+.|+.+.                                          
T Consensus       306 ~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~------------------------------------------  343 (507)
T PLN03224        306 RDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVT------------------------------------------  343 (507)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEEC------------------------------------------
Confidence            45667777888888889999999999999999999876                                          


Q ss_pred             HHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccc--cc
Q psy2006         199 SKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHS--TI  274 (351)
Q Consensus       199 ~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~--~~  274 (351)
                                                                           ....++|+|||++.....  ...  ..
T Consensus       344 -----------------------------------------------------~~~~~kL~DFGla~~~~~~~~~~~~~g  370 (507)
T PLN03224        344 -----------------------------------------------------VDGQVKIIDFGAAVDMCTGINFNPLYG  370 (507)
T ss_pred             -----------------------------------------------------CCCcEEEEeCcCccccccCCccCcccc
Confidence                                                                 124689999998854221  111  23


Q ss_pred             cccceeeCceeeecCC--------------------C--CCccceeeeeeeeEeeccccc-cccc
Q psy2006         275 VSTRHYRAPEVILELG--------------------W--AQPCDVWSIGCIIFELYLGIT-LMAR  316 (351)
Q Consensus       275 ~gt~~y~aPE~~~~~~--------------------~--~~~~DiwslG~~l~~l~tG~~-pf~~  316 (351)
                      .+++.|+|||.+....                    +  ..+.|+||+||++++|++|.. ||..
T Consensus       371 ~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSlGvil~em~~~~l~p~~~  435 (507)
T PLN03224        371 MLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTAGVLLMQMCVPELRPVAN  435 (507)
T ss_pred             CCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhHHHHHHHHHhCCCCCccc
Confidence            4478999999876432                    1  234699999999999999875 7754

>KOG1345|consensus

Probab=99.89  E-value=9.1e-24  Score=182.85  Aligned_cols=199  Identities=14%  Similarity=0.145  Sum_probs=158.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeee-eEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLD-WFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~-~f~~~~~~~lV~E~~   80 (351)
                      +.||+|.||.+-+|.++.++..+++|.+.+.......+.+|..-=-.|++ |.    ||+.-|+ .|+..+.++++|||+
T Consensus        30 k~lgeG~FgkIlL~eHr~s~t~ivlKavp~p~tt~~dF~rEfhY~~~Ls~-H~----hIi~tY~vaFqt~d~YvF~qE~a  104 (378)
T KOG1345|consen   30 KQLGEGRFGKILLAEHRQSKTRIVLKAVPRPQTTQADFVREFHYSFFLSP-HQ----HIIDTYEVAFQTSDAYVFVQEFA  104 (378)
T ss_pred             HHhcccceeeEEeeeccCCceEEEeeccCcchhhHHHHHHHhccceeecc-ch----hhhHHHHHHhhcCceEEEeeccC
Confidence            46899999999999999999999999998766556677777765555542 22    3886665 578888999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       -|||.+-+...+   +-|...+.++.|++.|                       ++|+|+++++|||+|.+||.+-|= 
T Consensus       105 P~gdL~snv~~~G---igE~~~K~v~~ql~SA-----------------------i~fMHsknlVHRdlK~eNiLif~~-  157 (378)
T KOG1345|consen  105 PRGDLRSNVEAAG---IGEANTKKVFAQLLSA-----------------------IEFMHSKNLVHRDLKAENILIFDA-  157 (378)
T ss_pred             ccchhhhhcCccc---ccHHHHHHHHHHHHHH-----------------------HHHhhccchhhcccccceEEEecC-
Confidence             899998877643   6677778888888777                       999999999999999999988730 


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (378)
T KOG1345|consen  158 --------------------------------------------------------------------------------  157 (378)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecC-----CCCCccceeeeeeeeEeeccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILEL-----GWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~-----~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                  .-..|||+|||..+..+......-.+..|.+||+....     ...+..|+|.||+++|..+||.+||
T Consensus       158 ------------df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~~PW  225 (378)
T KOG1345|consen  158 ------------DFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGKFPW  225 (378)
T ss_pred             ------------CccEEEeeecccccccCceehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCCCcc
Confidence                        12369999999988766655555566778888876532     3478899999999999999999999


Q ss_pred             cccCCCceee
Q psy2006         315 ARKTKTKYFY  324 (351)
Q Consensus       315 ~~~~~~~~~~  324 (351)
                      .....++.-+
T Consensus       226 Qka~~~d~~Y  235 (378)
T KOG1345|consen  226 QKASIMDKPY  235 (378)
T ss_pred             hhhhccCchH
Confidence            8766555543

>KOG2052|consensus

Probab=99.88  E-value=4.1e-23  Score=189.48  Aligned_cols=189  Identities=15%  Similarity=0.180  Sum_probs=143.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHH--hCCCCCCCCcceeeeeeeEeeCC----eEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQK--IGEKDPNGRHLCVKMLDWFDYHG----HMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~--l~h~~~~g~~~Iv~l~~~f~~~~----~~~l   75 (351)
                      +.||+|.||.||+|.  +-|+.||||++..  .+.++..+|..|.+.  |+|.|      |...+..=..++    .+||
T Consensus       217 e~IGkGRyGEVwrG~--wrGe~VAVKiF~s--rdE~SWfrEtEIYqTvmLRHEN------ILgFIaaD~~~~gs~TQLwL  286 (513)
T KOG2052|consen  217 EIIGKGRFGEVWRGR--WRGEDVAVKIFSS--RDERSWFRETEIYQTVMLRHEN------ILGFIAADNKDNGSWTQLWL  286 (513)
T ss_pred             EEecCccccceeecc--ccCCceEEEEecc--cchhhhhhHHHHHHHHHhccch------hhhhhhccccCCCceEEEEE
Confidence            579999999999999  6799999999985  334566777777765  66766      888776655443    8999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc--------ccccc
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK--------KREVR  146 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~--------~i~h~  146 (351)
                      |.+|. .|||+|++.+.-   +..+...+++..++.|                       |.+||-.        .|.||
T Consensus       287 vTdYHe~GSL~DyL~r~t---v~~~~ml~LalS~AsG-----------------------LaHLH~eI~GTqgKPaIAHR  340 (513)
T KOG2052|consen  287 VTDYHEHGSLYDYLNRNT---VTTEGMLKLALSIASG-----------------------LAHLHMEIVGTQGKPAIAHR  340 (513)
T ss_pred             eeecccCCcHHHHHhhcc---CCHHHHHHHHHHHhhh-----------------------HHHHHHHHhcCCCCchhhcc
Confidence            99999 999999999953   5555566666666655                       9999952        27899


Q ss_pred             ccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         147 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      |+|..||.+-                                                                      
T Consensus       341 DlKSKNILVK----------------------------------------------------------------------  350 (513)
T KOG2052|consen  341 DLKSKNILVK----------------------------------------------------------------------  350 (513)
T ss_pred             ccccccEEEc----------------------------------------------------------------------
Confidence            9999998775                                                                      


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCccee-------ccccccccccceeeCceeeecC----CC-C-C
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD-------DEHHSTIVSTRHYRAPEVILEL----GW-A-Q  293 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-------~~~~~~~~gt~~y~aPE~~~~~----~~-~-~  293 (351)
                                               ....+-|+|+|++-..       +-..+..+||-.|||||++...    .| + .
T Consensus       351 -------------------------kn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk  405 (513)
T KOG2052|consen  351 -------------------------KNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYMAPEVLDETINMKHFESYK  405 (513)
T ss_pred             -------------------------cCCcEEEeeceeeEEecccCCcccCCCCCccceeeccChHHhhhhcChhhhhhhh
Confidence                                     2456788999988542       2244678999999999998643    22 3 3


Q ss_pred             ccceeeeeeeeEeeccc----------cccccccCCCc
Q psy2006         294 PCDVWSIGCIIFELYLG----------ITLMARKTKTK  321 (351)
Q Consensus       294 ~~DiwslG~~l~~l~tG----------~~pf~~~~~~~  321 (351)
                      .+||||||+++||++..          +.||++....+
T Consensus       406 ~ADIYafgLVlWEiarRc~~ggi~eey~~Pyyd~Vp~D  443 (513)
T KOG2052|consen  406 RADIYAFGLVLWEIARRCESGGIVEEYQLPYYDVVPSD  443 (513)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEehhhcCCcccCCCCC
Confidence            48999999999999853          45776654443

>KOG0200|consensus

Probab=99.87  E-value=2.8e-22  Score=201.14  Aligned_cols=204  Identities=19%  Similarity=0.294  Sum_probs=157.2

Q ss_pred             ccccCcccceEEEEEEee-------cCcEEEEEEecchh--hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYE-------VDSVVALKIIKNVE--KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-------~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      +.||+|+||.||+|.-..       ....||+|.++...  ...+.+..|+++|+.+. |+|      |+.+++++...+
T Consensus       302 ~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~n------iv~llG~~t~~~  375 (609)
T KOG0200|consen  302 KYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPN------IVNLLGACTQDG  375 (609)
T ss_pred             ceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcc------hhhheeeeccCC
Confidence            369999999999998542       15689999997542  44567889999999997 444      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcC---CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccc
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENN---YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRR  147 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~---~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d  147 (351)
                      .+++|+||| .|+|.++++..+   ....+.            ...+....++..++-.+..|++.|++||.++.++|||
T Consensus       376 ~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~------------~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRD  443 (609)
T KOG0200|consen  376 PLYVIVEYAEHGDLLEFLRKKRVTESIDGSG------------VFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRD  443 (609)
T ss_pred             ceEEEEEeccCCcHHHHHHhccccccccccC------------CCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchh
Confidence            999999999 999999999876   100000            0000002356666777777777779999999999999


Q ss_pred             cCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         148 VRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       148 ~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +..-||.+.                                                                       
T Consensus       444 LAaRNVLi~-----------------------------------------------------------------------  452 (609)
T KOG0200|consen  444 LAARNVLIT-----------------------------------------------------------------------  452 (609)
T ss_pred             hhhhhEEec-----------------------------------------------------------------------
Confidence            999998887                                                                       


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-cc---cccc--cceeeCceeeecCCCCCccceeeee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-HS---TIVS--TRHYRAPEVILELGWAQPCDVWSIG  301 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-~~---~~~g--t~~y~aPE~~~~~~~~~~~DiwslG  301 (351)
                                              ....+||+|||+++..... ..   ...+  ...|||||.+....|+.++|+||+|
T Consensus       453 ------------------------~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~kWmApEsl~~~~ft~kSDVWSfG  508 (609)
T KOG0200|consen  453 ------------------------KNKVIKIADFGLARDHYNKDYYRTKSSAGTLPVKWMAPESLFDRVFTSKSDVWSFG  508 (609)
T ss_pred             ------------------------CCCEEEEccccceeccCCCCceEecCCCCccceeecCHHHhccCcccccchhhHHH
Confidence                                    2346899999999752221 11   1222  2459999999999999999999999


Q ss_pred             eeeEeecc-ccccccccC
Q psy2006         302 CIIFELYL-GITLMARKT  318 (351)
Q Consensus       302 ~~l~~l~t-G~~pf~~~~  318 (351)
                      +++||+.| |..|+.+-.
T Consensus       509 I~L~EifsLG~~PYp~~~  526 (609)
T KOG0200|consen  509 ILLWEIFTLGGTPYPGIP  526 (609)
T ss_pred             HHHHHHhhCCCCCCCCCC
Confidence            99999996 999998743

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.87  E-value=1.4e-21  Score=168.47  Aligned_cols=180  Identities=29%  Similarity=0.412  Sum_probs=151.7

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecchhh--hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNVEK--YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~--~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ||.|++|.||++.+..+++.+++|++.....  ..+.+.+|+++++.+.|++      |+++++++......++|+|++ 
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~------i~~~~~~~~~~~~~~~~~e~~~   74 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPN------IVKLYGVFEDENHLYLVMEYCE   74 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCC------eeeEeeeeecCCeEEEEEecCC
Confidence            7999999999999877899999999986533  2467889999999999866      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..++...+..++.+++.+                       +.++|+.|++|+|+++.|+.+.+   
T Consensus        75 ~~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~-----------------------l~~lh~~~~~H~dl~~~ni~~~~---  127 (215)
T cd00180          75 GGSLKDLLKENE-GKLSEDEILRILLQILEG-----------------------LEYLHSNGIIHRDLKPENILLDS---  127 (215)
T ss_pred             CCcHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccCCCHhhEEEeC---
Confidence            699999988763 246777788888888777                       99999999999999999998871   


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       128 --------------------------------------------------------------------------------  127 (215)
T cd00180         128 --------------------------------------------------------------------------------  127 (215)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecC-CCCCccceeeeeeeeEee
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l  307 (351)
                                 ....++|+||+.+......   .....+...|++||.+... ..+.++|+|++|++++++
T Consensus       128 -----------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~D~~~lg~~~~~l  187 (215)
T cd00180         128 -----------DNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVILYEL  187 (215)
T ss_pred             -----------CCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcccCCCCchhhhHHHHHHHHHH
Confidence                       0246899999988764433   3445677889999998776 678899999999999998

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1163|consensus

Probab=99.86  E-value=7.7e-22  Score=168.37  Aligned_cols=196  Identities=13%  Similarity=0.151  Sum_probs=157.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +++||+|+||.+|.|....+|+.||||+-++. .......-|.++.+.|++-.  |   |..+..++....+.++||+.+
T Consensus        20 vrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~-a~hpqL~yEskvY~iL~~g~--G---iP~i~~y~~e~~ynvlVMdLL   93 (341)
T KOG1163|consen   20 VRKIGSGSFGDIYLGISITSGEEVAIKLESSK-AKHPQLLYESKVYRILQGGV--G---IPHIRHYGTEKDYNVLVMDLL   93 (341)
T ss_pred             EEeecCCchhheeeeeeccCCceEEEEeeccc-CCCcchhHHHHHHHHhccCC--C---Cchhhhhccccccceeeeecc
Confidence            47999999999999999999999999998753 33456778999999997533  2   888999999999999999999


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      |.||.++..-+. ..++-..+..++.|++.-                       ++|+|.++.+||||||+|..++    
T Consensus        94 GPsLEdLfnfC~-R~ftmkTvLMLaDQml~R-----------------------iEyvH~r~fiHRDIKPdNFLMG----  145 (341)
T KOG1163|consen   94 GPSLEDLFNFCS-RRFTMKTVLMLADQMLSR-----------------------IEYVHLRNFIHRDIKPDNFLMG----  145 (341)
T ss_pred             CccHHHHHHHHh-hhhhHHhHHHHHHHHHHH-----------------------HHHHHhhccccccCCccceeec----
Confidence            999999887664 456777777777777766                       9999999999999999997665    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                             ..                                                                       
T Consensus       146 -------lg-----------------------------------------------------------------------  147 (341)
T KOG1163|consen  146 -------LG-----------------------------------------------------------------------  147 (341)
T ss_pred             -------cc-----------------------------------------------------------------------
Confidence                   00                                                                       


Q ss_pred             ccchhhhhhhccccceeeeccCCccee----------ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFD----------DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~----------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                .-...+-++|||++...          -.......||..|.+--...+..-+...|+-|+|.++..+..|
T Consensus       148 ----------rh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASinAh~g~eqSRRDDmeSvgYvLmYfnrG  217 (341)
T KOG1163|consen  148 ----------RHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASINAHLGIEQSRRDDMESVGYVLMYFNRG  217 (341)
T ss_pred             ----------cccceEEEEeccchhhhccccccccCccccCCccceeeeehhhhhhhhhhhhhhhhhhhhcceeeeeecC
Confidence                      01235778888887541          1122457889999877666666678899999999999999999


Q ss_pred             cccccccC
Q psy2006         311 ITLMARKT  318 (351)
Q Consensus       311 ~~pf~~~~  318 (351)
                      ..||.+-.
T Consensus       218 ~LPWQglk  225 (341)
T KOG1163|consen  218 SLPWQGLK  225 (341)
T ss_pred             CCcccccc
Confidence            99998854

>KOG1164|consensus

Probab=99.86  E-value=9.4e-22  Score=183.33  Aligned_cols=203  Identities=20%  Similarity=0.140  Sum_probs=163.5

Q ss_pred             ccccCcccceEEEEEEeecC-cEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeE-eeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVD-SVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWF-DYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~-~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f-~~~~~~~lV~E   78 (351)
                      ++||+|+||.||+|.+..++ +.+|+|+..... .....+..|+.+|..+..  .++..++..+++.+ ...+..||||+
T Consensus        24 ~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~--~~~~~~~~~~~~~G~~~~~~~~iVM~  101 (322)
T KOG1164|consen   24 KKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEK--KNGPSHFPKLLDHGRSTEDFNFIVMS  101 (322)
T ss_pred             eeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhh--hcCCCCCCEEEEeccCCCceeEEEEe
Confidence            68999999999999987664 689999987642 222267789999999974  22333499999999 57789999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      .+|.||.++........++...+..++.|++.+                       |+++|+.|++|||+||+|+.++.-
T Consensus       102 l~G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~-----------------------l~~lH~~G~iHRDiKp~N~~~g~~  158 (322)
T KOG1164|consen  102 LLGPSLEDLRKRNPPGRFSRKTVLRIAIQNLNA-----------------------LEDLHSKGFIHRDIKPENFVVGQS  158 (322)
T ss_pred             ccCccHHHHHHhCCCCCcCHhHHHHHHHHHHHH-----------------------HHHHHhcCcccCCcCHHHeeecCC
Confidence            999999999877766678888899999988888                       999999999999999999988710


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                      +                                                                               
T Consensus       159 ~-------------------------------------------------------------------------------  159 (322)
T KOG1164|consen  159 S-------------------------------------------------------------------------------  159 (322)
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             hhccchhhhhhhccccceeeeccCCcc--ee---c----c-c---cccccccceeeCceeeecCCCCCccceeeeeeeeE
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSAT--FD---D----E-H---HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~--~~---~----~-~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~  305 (351)
                                 ......+.+.|||+++  ..   .    . .   .....||..|.++.+..+...+.+.|+||++.++.
T Consensus       160 -----------~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry~S~~~H~~~e~~r~DDles~~Y~l~  228 (322)
T KOG1164|consen  160 -----------RSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRYASINVHLGIEQGRRDDLESLFYMLL  228 (322)
T ss_pred             -----------CcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCccccccHHHhCCCccCCchhhhhHHHHHH
Confidence                       0012468999999997  21   1    0 1   12345999999999999999999999999999999


Q ss_pred             eeccccccccccCC
Q psy2006         306 ELYLGITLMARKTK  319 (351)
Q Consensus       306 ~l~tG~~pf~~~~~  319 (351)
                      ++..|..||.+...
T Consensus       229 el~~g~LPW~~~~~  242 (322)
T KOG1164|consen  229 ELLKGSLPWEALEM  242 (322)
T ss_pred             HHhcCCCCCccccc
Confidence            99999999966553

>KOG1165|consensus

Probab=99.85  E-value=2.3e-21  Score=172.29  Aligned_cols=196  Identities=15%  Similarity=0.136  Sum_probs=163.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      ++||+|+||..|.|.+..++++||||.-... +.......|-+..+.|.. .+.    |.+++-+-....|..||+|.+|
T Consensus        34 kKIGeGsFG~lf~G~Nl~nne~VAIKfEPrk-S~APQLrdEYr~YKlL~g-~~G----IP~vYYFGqeG~~NiLVidLLG  107 (449)
T KOG1165|consen   34 KKIGEGSFGVLFLGKNLYNNEPVAIKFEPRK-SEAPQLRDEYRTYKLLGG-TEG----IPQVYYFGQEGKYNILVIDLLG  107 (449)
T ss_pred             cccccCcceeeecccccccCceEEEEecccc-CCcchHHHHHHHHHHHcC-CCC----CCceeeeccccchhhhhhhhhC
Confidence            6899999999999999999999999998642 334567789999999973 222    8888877777779999999999


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCc
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      .||.|+..-++ +.|+...|..++.|++.-                       ++++|++..+.||+||+|..|+-    
T Consensus       108 PSLEDLFD~Cg-R~FSvKTV~miA~Qmi~r-----------------------ie~vH~k~LIYRDIKPdNFLIGr----  159 (449)
T KOG1165|consen  108 PSLEDLFDLCG-RRFSVKTVAMIAKQMITR-----------------------IEYVHEKDLIYRDIKPDNFLIGR----  159 (449)
T ss_pred             cCHHHHHHHhc-CcccHHhHHHHHHHHHHH-----------------------HHHHHhcceeecccCccceeecC----
Confidence            99999998886 578888888888877777                       99999999999999999998871    


Q ss_pred             ccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhc
Q psy2006         162 TFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (351)
                                                                      |+-                             
T Consensus       160 ------------------------------------------------p~~-----------------------------  162 (449)
T KOG1165|consen  160 ------------------------------------------------PGT-----------------------------  162 (449)
T ss_pred             ------------------------------------------------CCC-----------------------------
Confidence                                                            000                             


Q ss_pred             cchhhhhhhccccceeeeccCCcceecc----------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                               .....+.++|||++...-.          ..-+..||..||+--..+++.-+...|+=|+|-++++.+.|.
T Consensus       163 ---------k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYMSINTHlGrEQSRRDDLEaLGHvFmYFLRGs  233 (449)
T KOG1165|consen  163 ---------KDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGS  233 (449)
T ss_pred             ---------CCCceEEEEeccchhhhcCccccccCccccccccccceeeeEeeccccchhhhhhhHHHhhhhhhhhccCC
Confidence                     1245688999999975221          223578999999999999999999999999999999999999


Q ss_pred             cccccc
Q psy2006         312 TLMARK  317 (351)
Q Consensus       312 ~pf~~~  317 (351)
                      .||.|-
T Consensus       234 LPWQGL  239 (449)
T KOG1165|consen  234 LPWQGL  239 (449)
T ss_pred             Cccccc
Confidence            999875

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.83  E-value=3.3e-20  Score=173.72  Aligned_cols=113  Identities=12%  Similarity=-0.012  Sum_probs=86.0

Q ss_pred             ccccCcccceEEEEEEee-cCcEEEEEEecch------hhhhHHHHHHHHHHHHhCCCCCCCCccee-eeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYE-VDSVVALKIIKNV------EKYREAARLEINALQKIGEKDPNGRHLCV-KMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-~~~~vAiK~~~~~------~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv-~l~~~f~~~~~~   73 (351)
                      +.||+|+||+||+|.++. +++.||||++...      ......+.+|+++|+.++|++      |+ .+++.    ++.
T Consensus        24 ~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~------iv~~l~~~----~~~   93 (365)
T PRK09188         24 AVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIG------VVPQLLAT----GKD   93 (365)
T ss_pred             cEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCC------CCcEEEEc----CCc
Confidence            579999999999999876 6788899987532      223456889999999999877      76 45542    568


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccccc-CCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV-RRC  151 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~-k~~  151 (351)
                      ||||||+ |++|.. +..     ..   ...++.|++.+                       |.|||++|++|||+ ||+
T Consensus        94 ~LVmE~~~G~~L~~-~~~-----~~---~~~~~~~i~~a-----------------------L~~lH~~gIiHrDL~KP~  141 (365)
T PRK09188         94 GLVRGWTEGVPLHL-ARP-----HG---DPAWFRSAHRA-----------------------LRDLHRAGITHNDLAKPQ  141 (365)
T ss_pred             EEEEEccCCCCHHH-hCc-----cc---hHHHHHHHHHH-----------------------HHHHHHCCCeeCCCCCcc
Confidence            9999999 778863 211     01   13455555555                       99999999999999 999


Q ss_pred             CeEEe
Q psy2006         152 DIRLI  156 (351)
Q Consensus       152 ni~l~  156 (351)
                      |+.+.
T Consensus       142 NILv~  146 (365)
T PRK09188        142 NWLMG  146 (365)
T ss_pred             eEEEc
Confidence            98775

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.82  E-value=2.4e-21  Score=200.99  Aligned_cols=150  Identities=16%  Similarity=0.187  Sum_probs=114.9

Q ss_pred             eeeeeeeEe-------eCCeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHH
Q psy2006          60 CVKMLDWFD-------YHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLI  132 (351)
Q Consensus        60 Iv~l~~~f~-------~~~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~  132 (351)
                      |+.++|+|.       ..+.++.+||+++++|++++.... ..+++..++.++.||+.|                     
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~a---------------------   92 (793)
T PLN00181         35 VRSLLGSHKEGNLDGLDDDSIVRALECEDVSLRQWLDNPD-RSVDAFECFHVFRQIVEI---------------------   92 (793)
T ss_pred             HHHhhcccCCccccccccchhhhhhccCCccHHHHHhccc-ccccHHHHHHHHHHHHHH---------------------
Confidence            888888883       334788889999999999997542 357788888888888877                     


Q ss_pred             hhhhccccccccccccCCCCeEEe--------ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhcc
Q psy2006         133 YAVDYNNKKKREVRRVRRCDIRLI--------DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEY  204 (351)
Q Consensus       133 ~~l~~lH~~~i~h~d~k~~ni~l~--------Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~  204 (351)
                        |+|||++||+|||+||.||+|.        |||++.....                                      
T Consensus        93 --l~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~--------------------------------------  132 (793)
T PLN00181         93 --VNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGS--------------------------------------  132 (793)
T ss_pred             --HHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCcccc--------------------------------------
Confidence              9999999999999999998774        4554422110                                      


Q ss_pred             CCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc---------------
Q psy2006         205 EPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---------------  269 (351)
Q Consensus       205 ~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---------------  269 (351)
                                                                    .....+|++|||+++....               
T Consensus       133 ----------------------------------------------~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~  166 (793)
T PLN00181        133 ----------------------------------------------DEDATTKSREIGSSRREEILSERRIEKLEEVKKQ  166 (793)
T ss_pred             ----------------------------------------------cccCcccccccccccccccccccchhhhhccccC
Confidence                                                          0124578899998753110               


Q ss_pred             ----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         270 ----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       270 ----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                          ......||+.|+|||++.+..++.++|||||||++|||++|.+||...
T Consensus       167 ~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~~~~~~~~  218 (793)
T PLN00181        167 PFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCPVSSREEK  218 (793)
T ss_pred             CCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhCCCchhhH
Confidence                011246889999999999999999999999999999999999988643

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.78  E-value=9.8e-19  Score=150.47  Aligned_cols=131  Identities=15%  Similarity=0.089  Sum_probs=95.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh---h------------------------hHHHHHHHHHHHHhCCCCC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK---Y------------------------REAARLEINALQKIGEKDP   54 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~---~------------------------~~~~~~E~~~l~~l~h~~~   54 (351)
                      +.||+|+||+||+|.+. +|+.||+|+++....   .                        ......|+++|.++.+.+ 
T Consensus         3 ~~ig~G~~~~Vy~a~~~-~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~-   80 (190)
T cd05147           3 GCISTGKEANVYHATTA-NGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAG-   80 (190)
T ss_pred             CccccccceEEEEEECC-CCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCC-
Confidence            67999999999999986 899999999975311   0                        112345999999997655 


Q ss_pred             CCCcceeeeeeeEeeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHh
Q psy2006          55 NGRHLCVKMLDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIY  133 (351)
Q Consensus        55 ~g~~~Iv~l~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~  133 (351)
                           |...... ....+ +|||||+ |+++...+...  .++++..+..++.|++.+                      
T Consensus        81 -----v~~p~~~-~~~~~-~iVmE~i~g~~l~~~~~~~--~~~~~~~~~~i~~qi~~~----------------------  129 (190)
T cd05147          81 -----IPCPEPI-LLKSH-VLVMEFIGDDGWAAPRLKD--APLSESKARELYLQVIQI----------------------  129 (190)
T ss_pred             -----CCCCcEE-EecCC-EEEEEEeCCCCCcchhhhc--CCCCHHHHHHHHHHHHHH----------------------
Confidence                 3222211 22223 8999999 55554443222  357777888888888887                      


Q ss_pred             hhhcc-ccccccccccCCCCe-------EEeecCCcccCCC
Q psy2006         134 AVDYN-NKKKREVRRVRRCDI-------RLIDFGSATFDDE  166 (351)
Q Consensus       134 ~l~~l-H~~~i~h~d~k~~ni-------~l~Dfg~s~~~~~  166 (351)
                       |.++ |+.|++|||+||+|+       +|+|||+|...+.
T Consensus       130 -L~~l~H~~giiHrDlkP~NIli~~~~v~LiDFG~a~~~~~  169 (190)
T cd05147         130 -MRILYQDCRLVHADLSEYNLLYHDGKLYIIDVSQSVEHDH  169 (190)
T ss_pred             -HHHHHHhCCcccCCCCHHHEEEECCcEEEEEccccccCCC
Confidence             9999 799999999999885       8899999865433

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.77  E-value=1.3e-18  Score=159.31  Aligned_cols=191  Identities=28%  Similarity=0.357  Sum_probs=156.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh----hhHHHHHHHHHHHHhCCC-CCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK----YREAARLEINALQKIGEK-DPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~----~~~~~~~E~~~l~~l~h~-~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||.|+||.||++.+.   ..+|+|.+.....    ....+.+|+.++..+.|. +      |+.+++.+......+++
T Consensus         6 ~~l~~g~~~~v~~~~~~---~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~------i~~~~~~~~~~~~~~~~   76 (384)
T COG0515           6 RKLGEGSFGEVYLARDR---KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPN------IVKLYDFFQDEGSLYLV   76 (384)
T ss_pred             EeecCCCCeEEEEEEec---cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcc------eeeEEEEEecCCEEEEE
Confidence            57999999999999976   8899999976432    356788999999999876 4      99999999888889999


Q ss_pred             Eecc-CCCHHHHHHhcCC-CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          77 FEIL-GLSVFDFLKENNY-LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ++++ ++++.+++..... ..+++..+..++.|++.+                       +.++|+.+++|||+|+.|+.
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------l~~~H~~~~~hrd~kp~nil  133 (384)
T COG0515          77 MEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSA-----------------------LEYLHSKGIIHRDIKPENIL  133 (384)
T ss_pred             EecCCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccCCCHHHee
Confidence            9999 8899977666532 146667777777777766                       99999999999999999988


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +..                                                                             
T Consensus       134 ~~~-----------------------------------------------------------------------------  136 (384)
T COG0515         134 LDR-----------------------------------------------------------------------------  136 (384)
T ss_pred             ecC-----------------------------------------------------------------------------
Confidence            761                                                                             


Q ss_pred             hhhhhhccchhhhhhhcccc-ceeeeccCCcceecc---------ccccccccceeeCceeeec---CCCCCccceeeee
Q psy2006         235 QADRILSSVSSLVMRRVRRC-DIRLIDFGSATFDDE---------HHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIG  301 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~-~vkl~dfg~~~~~~~---------~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwslG  301 (351)
                                        .. .++++|||.+.....         ......|+..|++||.+.+   ...+...|+|++|
T Consensus       137 ------------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~D~~s~g  198 (384)
T COG0515         137 ------------------DGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSSDIWSLG  198 (384)
T ss_pred             ------------------CCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHhcCCCCCCCCchHhHHHHH
Confidence                              12 588999998764222         2356789999999999987   4678899999999


Q ss_pred             eeeEeeccccccccccCC
Q psy2006         302 CIIFELYLGITLMARKTK  319 (351)
Q Consensus       302 ~~l~~l~tG~~pf~~~~~  319 (351)
                      ++++++++|..||.....
T Consensus       199 ~~~~~~~~~~~p~~~~~~  216 (384)
T COG0515         199 ITLYELLTGLPPFEGEKN  216 (384)
T ss_pred             HHHHHHHhCCCCCCCCCc
Confidence            999999999999877764

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.75  E-value=1.1e-17  Score=144.22  Aligned_cols=122  Identities=11%  Similarity=-0.009  Sum_probs=87.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhh---------------------------hHHHHHHHHHHHHhCCCC
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKY---------------------------REAARLEINALQKIGEKD   53 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~---------------------------~~~~~~E~~~l~~l~h~~   53 (351)
                      .+.||+|+||.||+|.+. +|+.||||+++.....                           ......|.+.+.++.+.+
T Consensus         2 ~~~ig~G~~~~Vy~a~~~-~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~   80 (190)
T cd05145           2 NGCISTGKEANVYHARTG-DGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAG   80 (190)
T ss_pred             CceeecCCCcEEEEEEcC-CCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence            368999999999999986 8999999999753110                           112357899999998766


Q ss_pred             CCCCcceeeeeeeEeeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHH
Q psy2006          54 PNGRHLCVKMLDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLI  132 (351)
Q Consensus        54 ~~g~~~Iv~l~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~  132 (351)
                            |.....+...  ..||||||+ |+++.......  .++++..+..++.|++.+                     
T Consensus        81 ------i~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~--~~~~~~~~~~i~~~l~~~---------------------  129 (190)
T cd05145          81 ------VPVPEPILLK--KNVLVMEFIGDDGSPAPRLKD--VPLEEEEAEELYEQVVEQ---------------------  129 (190)
T ss_pred             ------CCCceEEEec--CCEEEEEEecCCCchhhhhhh--ccCCHHHHHHHHHHHHHH---------------------
Confidence                  4332222222  248999999 54443332222  346777778888888877                     


Q ss_pred             hhhhcccc-ccccccccCCCCeEEe
Q psy2006         133 YAVDYNNK-KKREVRRVRRCDIRLI  156 (351)
Q Consensus       133 ~~l~~lH~-~~i~h~d~k~~ni~l~  156 (351)
                        +.++|+ .|++|||+||+|+.+.
T Consensus       130 --l~~lH~~~givHrDlkP~NIll~  152 (190)
T cd05145         130 --MRRLYQEAGLVHGDLSEYNILYH  152 (190)
T ss_pred             --HHHHHHhCCEecCCCChhhEEEE
Confidence              999999 9999999999997543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.75  E-value=3.7e-18  Score=149.40  Aligned_cols=115  Identities=10%  Similarity=0.075  Sum_probs=87.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhH----H------HHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYRE----A------ARLEINALQKIGEKDPNGRHLCVKMLDWFDYH   70 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~----~------~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~   70 (351)
                      ++.||.|+||.||++.+  +++.+|+|++.......+    .      ..+|++.+.++.|++      |..+.+++...
T Consensus        36 ~~~l~~~~f~~v~l~~~--~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~G------I~~~~d~~~~~  107 (232)
T PRK10359         36 IKVFRNIDDTKVSLIDT--DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEG------LASLNDFYLLA  107 (232)
T ss_pred             EEEecCCCceEEEEEec--CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCC------CCcceEeeeec
Confidence            36799999999999654  577899999974321111    2      578999999998887      88888887654


Q ss_pred             --------CeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc
Q psy2006          71 --------GHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK  141 (351)
Q Consensus        71 --------~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  141 (351)
                              +..+|||||+ |.+|.++..      +++    ....++..+                       +..+|+.
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~~------~~~----~~~~~i~~~-----------------------l~~lH~~  154 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMPE------ISE----DVKAKIKAS-----------------------IESLHQH  154 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhhh------ccH----HHHHHHHHH-----------------------HHHHHHc
Confidence                    3689999999 778877621      222    223355555                       9999999


Q ss_pred             cccccccCCCCeEEe
Q psy2006         142 KREVRRVRRCDIRLI  156 (351)
Q Consensus       142 ~i~h~d~k~~ni~l~  156 (351)
                      |++|+|++|+|+.+.
T Consensus       155 gi~H~Dikp~Nili~  169 (232)
T PRK10359        155 GMVSGDPHKGNFIVS  169 (232)
T ss_pred             CCccCCCChHHEEEe
Confidence            999999999999876

>KOG0590|consensus

Probab=99.73  E-value=2.5e-18  Score=171.08  Aligned_cols=195  Identities=20%  Similarity=0.213  Sum_probs=147.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEec----ch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIK----NV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~----~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.+|.|+||.|+.+......+.++.|.+.    ..   ..+...+..|.-+-..|.|++      ++..++.+.......
T Consensus       324 ~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~------~~e~l~~~~~~~~~~  397 (601)
T KOG0590|consen  324 RVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPN------IIETLDIVQEIDGIL  397 (601)
T ss_pred             ceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCc------hhhhHHHHhhcccch
Confidence            46899999999888877777777777654    21   122233566777777888777      777776666555444


Q ss_pred             EEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          75 IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        75 lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      -+||||..+|+.++.+..  .                       +.-.++-.+++|++.|++|+|+.|+.|||+|+.|+.
T Consensus       398 ~~mE~~~~Dlf~~~~~~~--~-----------------------~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll  452 (601)
T KOG0590|consen  398 QSMEYCPYDLFSLVMSNG--K-----------------------LTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLL  452 (601)
T ss_pred             hhhhcccHHHHHHHhccc--c-----------------------cchhhhhHHHHHHHHHHHHHHhcCceeccCccccEE
Confidence            449999559999998863  2                       334445555556666699999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       453 ~~------------------------------------------------------------------------------  454 (601)
T KOG0590|consen  453 VT------------------------------------------------------------------------------  454 (601)
T ss_pred             Ee------------------------------------------------------------------------------
Confidence            87                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeecCCC-CCccceeeeeeeeEe
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFE  306 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~  306 (351)
                                       ..+.+||+|||.+.....       .....+|+..|+|||.+.+..| ....||||+|+++..
T Consensus       455 -----------------~~g~lki~Dfg~~~vf~~~~e~~~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~  517 (601)
T KOG0590|consen  455 -----------------ENGILKIIDFGAASVFRYPWEKNIHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYIC  517 (601)
T ss_pred             -----------------cCCceEEeecCcceeeccCcchhhhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEE
Confidence                             345799999998865222       2245788999999999999998 566799999999999


Q ss_pred             eccccccccccCCCce
Q psy2006         307 LYLGITLMARKTKTKY  322 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~  322 (351)
                      |++|+.||.-....+.
T Consensus       518 m~~~~~~Wk~a~~~~~  533 (601)
T KOG0590|consen  518 MILGRFPWKVAKKSDN  533 (601)
T ss_pred             EecCCCcccccccccc
Confidence            9999999988776655

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.68  E-value=6.1e-17  Score=139.07  Aligned_cols=112  Identities=10%  Similarity=0.043  Sum_probs=83.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhh-----HHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYR-----EAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~-----~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ..|++|+||+|+.+.  ..++.++.+.+.......     ..+.+|+++|++|.|. ++    |++++++    +..+++
T Consensus         8 ~~l~~~~f~~v~~~~--~~~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~~~-~~----vP~ll~~----~~~~lv   76 (218)
T PRK12274          8 EPLKSDTFGRILLVR--GGERKFVRRDLSAAPWWLRGVAWWLARREALALRQLDGL-PR----TPRLLHW----DGRHLD   76 (218)
T ss_pred             eeecCCCcceEEEee--cCCceeeecccccchhhhhhHHHHHHHHHHHHHHhcCCC-CC----CCEEEEE----cCEEEE
Confidence            468999999999877  588899988887654322     2578899999999652 22    8888886    456999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccccc-CCCCeE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV-RRCDIR  154 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~-k~~ni~  154 (351)
                      |||+ |.+|.+.+..        . ...++.|++.+                       |.++|+.|++|||+ |+.|+.
T Consensus        77 meyI~G~~L~~~~~~--------~-~~~~~~qi~~~-----------------------L~~lH~~GIvHrDL~kp~NIL  124 (218)
T PRK12274         77 RSYLAGAAMYQRPPR--------G-DLAYFRAARRL-----------------------LQQLHRCGVAHNDLAKEANWL  124 (218)
T ss_pred             EeeecCccHHhhhhh--------h-hHHHHHHHHHH-----------------------HHHHHHCcCccCCCCCcceEE
Confidence            9999 7788653211        1 12344555555                       99999999999999 788876


Q ss_pred             Ee
Q psy2006         155 LI  156 (351)
Q Consensus       155 l~  156 (351)
                      +.
T Consensus       125 v~  126 (218)
T PRK12274        125 VQ  126 (218)
T ss_pred             Ec
Confidence            64

>PRK10345 hypothetical protein; Provisional

Probab=99.68  E-value=3.3e-16  Score=136.38  Aligned_cols=123  Identities=11%  Similarity=0.073  Sum_probs=93.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC---e-EEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG---H-MCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~---~-~~lV   76 (351)
                      ++||+|+||.||.  +..+... +||++... ....+.+.+|+++++.+.|.+. .+.||++++++++++.   . +.+|
T Consensus         8 ~~LG~G~~~~Vy~--hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~-~h~nIvr~yg~~et~~g~g~v~~~I   83 (210)
T PRK10345          8 SPLGTGRHRKCYA--HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLI-DWSGIPRYYGTVETDCGTGYVYDVI   83 (210)
T ss_pred             ceecCCCceEEEE--CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCC-CCcccceeeEEEEeCCCCeEEEEEE
Confidence            5799999999996  5566655 69998753 2234678999999999965111 1333999999999874   4 4489


Q ss_pred             EeccC---CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhh-hccccccccccccCCCC
Q psy2006          77 FEILG---LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAV-DYNNKKKREVRRVRRCD  152 (351)
Q Consensus        77 ~E~~g---~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~lH~~~i~h~d~k~~n  152 (351)
                      |||+|   ++|.+++++.   .+++.  ..++.|++.+                       + +|||+.+|+|||+||.|
T Consensus        84 ~e~~G~~~~tL~~~l~~~---~~~e~--~~~~~~~L~~-----------------------l~~yLh~~~IvhrDlKp~N  135 (210)
T PRK10345         84 ADFDGKPSITLTEFAEQC---RYEED--VAQLRQLLKK-----------------------LKRYLLDNRIVTMELKPQN  135 (210)
T ss_pred             ecCCCCcchhHHHHHHcc---cccHh--HHHHHHHHHH-----------------------HHHHHHHCCEeecCCCHHH
Confidence            99954   8999999764   24554  2446666655                       6 99999999999999999


Q ss_pred             eEEe
Q psy2006         153 IRLI  156 (351)
Q Consensus       153 i~l~  156 (351)
                      |.+.
T Consensus       136 ILl~  139 (210)
T PRK10345        136 ILCQ  139 (210)
T ss_pred             EEEe
Confidence            9886

>KOG1024|consensus

Probab=99.68  E-value=7.4e-18  Score=152.91  Aligned_cols=197  Identities=14%  Similarity=0.058  Sum_probs=141.7

Q ss_pred             cccCcccceEEEEEEee-----cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-eEE
Q psy2006           3 SLNCVASNHVCTNVVYE-----VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-HMC   74 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-~~~   74 (351)
                      .+-+|.||.||+|++++     +.+.|-+|.++..  +.....+..|.-.+..+.|+|      +.++.+...... .-+
T Consensus       291 llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~n------ll~V~~V~ie~~~~P~  364 (563)
T KOG1024|consen  291 LLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPN------LLSVLGVSIEDYATPF  364 (563)
T ss_pred             hhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCC------ccceeEEEeeccCcce
Confidence            35689999999998775     3345666666542  233445667777777777777      999998887665 667


Q ss_pred             EEEecc-CCCHHHHHHhcCCC------CCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccc
Q psy2006          75 IAFEIL-GLSVFDFLKENNYL------PYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRR  147 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~------~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d  147 (351)
                      .++.++ -|+|..++..++..      .+...+...++.                       |+..|++|||++|++|.|
T Consensus       365 V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~mas-----------------------Qla~am~hlh~~~ViHkD  421 (563)
T KOG1024|consen  365 VLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMAS-----------------------QLAMAMEHLHNHGVIHKD  421 (563)
T ss_pred             EEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHH-----------------------HHHHHHHHHHhcCcccch
Confidence            777888 68999999865421      122233444444                       445559999999999999


Q ss_pred             cCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         148 VRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       148 ~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +..-|..+.|                                                                      
T Consensus       422 iAaRNCvIdd----------------------------------------------------------------------  431 (563)
T KOG1024|consen  422 IAARNCVIDD----------------------------------------------------------------------  431 (563)
T ss_pred             hhhhcceehh----------------------------------------------------------------------
Confidence            9988877663                                                                      


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccc-----cceeeCceeeecCCCCCccceeeeee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVS-----TRHYRAPEVILELGWAQPCDVWSIGC  302 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~g-----t~~y~aPE~~~~~~~~~~~DiwslG~  302 (351)
                                               .-.|||+|-.+++-.=.....+.|     ...||+||.+....|+.++|+||||+
T Consensus       432 -------------------------~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~~yssasDvWsfGV  486 (563)
T KOG1024|consen  432 -------------------------QLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNSHYSSASDVWSFGV  486 (563)
T ss_pred             -------------------------heeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhhhhcchhhhHHHHH
Confidence                                     235788887776531111111122     35899999999999999999999999


Q ss_pred             eeEeecc-ccccccccCCCcee
Q psy2006         303 IIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       303 ~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      ++|||.| |+.|+..-+..|..
T Consensus       487 llWELmtlg~~PyaeIDPfEm~  508 (563)
T KOG1024|consen  487 LLWELMTLGKLPYAEIDPFEME  508 (563)
T ss_pred             HHHHHHhcCCCCccccCHHHHH
Confidence            9999997 99999988876654

>KOG0606|consensus

Probab=99.68  E-value=3.7e-18  Score=171.32  Aligned_cols=63  Identities=32%  Similarity=0.698  Sum_probs=57.7

Q ss_pred             cccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCCCceee---ecccCCccccc
Q psy2006         273 TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFY---HGKLDWDEKGT  335 (351)
Q Consensus       273 ~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~~~~---~~~~~~~~~~~  335 (351)
                      ..+|||.|.|||++...+|+..+|+|++|+++|+.+-|..||.++|.+++|-   ..++.|++..+
T Consensus       217 qvcgTPeyiaPeVilrqgygkpvdwwamGiIlyeFLVgcvpffGdtpeelfg~visd~i~wpE~de  282 (1205)
T KOG0606|consen  217 QVCGTPEYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISDDIEWPEEDE  282 (1205)
T ss_pred             cccCCccccChhhhhhhccCCCccHHHHHHHHHHHheeeeeccCCCHHHHHhhhhhhhccccccCc
Confidence            3589999999999999999999999999999999999999999999999974   67788988844

>KOG0603|consensus

Probab=99.66  E-value=6.2e-18  Score=162.07  Aligned_cols=184  Identities=24%  Similarity=0.302  Sum_probs=147.5

Q ss_pred             ccCcccceEEEEEEe---ecCcEEEEEEecchh---hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           4 LNCVASNHVCTNVVY---EVDSVVALKIIKNVE---KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         4 iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +|.|+||.|++++-.   ..+.-+|+|+.++..   ..+.....|..++.... |+.      ++.+...|+.+..++++
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f------~v~lhyafqt~~kl~l~   75 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPF------LVKLHYAFQTDGKLYLI   75 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCc------eeeeeeeeccccchhHh
Confidence            799999999988632   367899999997642   12224456788888876 444      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      +++. |++|+..+....  .+.+..++.+...++.+                       ++++|+.++++||+|+.|+.+
T Consensus        76 ld~~rgg~lft~l~~~~--~f~~~~~~~~~aelaLa-----------------------ld~lh~l~iiyrd~k~enill  130 (612)
T KOG0603|consen   76 LDFLRGGDLFTRLSKEV--MFDELDVAFYLAELALA-----------------------LDHLHKLGIAYRDYKLENVLL  130 (612)
T ss_pred             hhhcccchhhhccccCC--chHHHHHHHHHHHHHHH-----------------------HhhcchhHHHHhcccccceee
Confidence            9999 889998876654  45555566655555555                       999999999999999999877


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       131 d-------------------------------------------------------------------------------  131 (612)
T KOG0603|consen  131 L-------------------------------------------------------------------------------  131 (612)
T ss_pred             c-------------------------------------------------------------------------------
Confidence            5                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                      ..+.+++.|||.++..-..... +||..|||||++.  +....+|+||+|++.++++||..||.
T Consensus       132 ----------------~~Ghi~~tdfglske~v~~~~~-cgt~eymApEI~~--gh~~a~D~ws~gvl~felltg~~pf~  192 (612)
T KOG0603|consen  132 ----------------LEGHIKLTDFGLSKEAVKEKIA-CGTYEYRAPEIIN--GHLSAADWWSFGVLAFELLTGTLPFG  192 (612)
T ss_pred             ----------------ccCccccCCchhhhHhHhhhhc-ccchhhhhhHhhh--ccCCcccchhhhhhHHHHhhCCCCCc
Confidence                            3578999999998753222212 8999999999997  67788999999999999999999998


Q ss_pred             c
Q psy2006         316 R  316 (351)
Q Consensus       316 ~  316 (351)
                      +
T Consensus       193 ~  193 (612)
T KOG0603|consen  193 G  193 (612)
T ss_pred             h
Confidence            8

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.66  E-value=3.7e-17  Score=138.63  Aligned_cols=62  Identities=21%  Similarity=0.297  Sum_probs=50.4

Q ss_pred             cceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCC
Q psy2006         254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTK  319 (351)
Q Consensus       254 ~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~  319 (351)
                      ..+++  ||++......  ...||+.|+|||++.+..++.++||||+||++|+++||..||.....
T Consensus        48 ~~~~~--fG~~~~~~~~--~~~g~~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~  109 (176)
T smart00750       48 GLLKL--DGSVAFKTPE--QSRVDPYFMAPEVIQGQSYTEKADIYSLGITLYEALDYELPYNEERE  109 (176)
T ss_pred             cceee--ccceEeeccc--cCCCcccccChHHhcCCCCcchhhHHHHHHHHHHHHhCCCCccccch
Confidence            34566  8887654332  23688999999999999999999999999999999999999976543

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>smart00090 RIO RIO-like kinase

Probab=99.63  E-value=2e-15  Score=134.39  Aligned_cols=121  Identities=12%  Similarity=0.052  Sum_probs=86.7

Q ss_pred             ccccCcccceEEEEE-EeecCcEEEEEEecchhh-------------------------hhHHHHHHHHHHHHhCCCCCC
Q psy2006           2 CSLNCVASNHVCTNV-VYEVDSVVALKIIKNVEK-------------------------YREAARLEINALQKIGEKDPN   55 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~-~~~~~~~vAiK~~~~~~~-------------------------~~~~~~~E~~~l~~l~h~~~~   55 (351)
                      ++||.|+||.||+|. +..+|+.||+|++.....                         ....+.+|+.+++++.+....
T Consensus        34 ~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~~L~~~~i~  113 (237)
T smart00090       34 GCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQRLYEAGVP  113 (237)
T ss_pred             CeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            579999999999999 667999999999974320                         012346899999999742211


Q ss_pred             CCcceeeeeeeEeeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhh
Q psy2006          56 GRHLCVKMLDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYA  134 (351)
Q Consensus        56 g~~~Iv~l~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                          +..+++   .. ..+|||||+ |.+|...+....  .+....+..++.|++.+                       
T Consensus       114 ----~p~~~~---~~-~~~lV~E~~~g~~L~~~~~~~~--~~~~~~~~~i~~qi~~~-----------------------  160 (237)
T smart00090      114 ----VPKPIA---WR-RNVLVMEFIGGDGLPAPRLKDV--EPEEEEEFELYDDILEE-----------------------  160 (237)
T ss_pred             ----CCeeeE---ec-CceEEEEEecCCcccccccccC--CcchHHHHHHHHHHHHH-----------------------
Confidence                334443   22 348999999 556665442222  34455566777777777                       


Q ss_pred             hhcccccc-ccccccCCCCeEE
Q psy2006         135 VDYNNKKK-REVRRVRRCDIRL  155 (351)
Q Consensus       135 l~~lH~~~-i~h~d~k~~ni~l  155 (351)
                      +.++|+.| ++|+|+||+|+.+
T Consensus       161 l~~LH~~g~iiH~Dikp~NIli  182 (237)
T smart00090      161 MRKLYKEGELVHGDLSEYNILV  182 (237)
T ss_pred             HHHHHhcCCEEeCCCChhhEEE
Confidence            99999999 9999999999755

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.59  E-value=1.2e-14  Score=126.95  Aligned_cols=126  Identities=17%  Similarity=0.165  Sum_probs=99.0

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      ++.||+|++|.||+|..  .+..|++|+.....         .......+|+.++..+.+.+      |.....++...+
T Consensus         1 ~~~l~~G~~~~vy~~~~--~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~------i~~p~~~~~~~~   72 (211)
T PRK14879          1 MKLIKRGAEAEIYLGDF--LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAG------VNVPAVYFVDPE   72 (211)
T ss_pred             CcccccCceEEEEEEee--CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCC------CCCCeEEEEeCC
Confidence            57899999999999984  78889999865321         11235678999999998766      666566666777


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      ..++||||+ |++|.+++....     . ....++.+++.+                       |.++|+.+++|+|+++
T Consensus        73 ~~~lv~e~~~G~~L~~~~~~~~-----~-~~~~i~~~i~~~-----------------------l~~lH~~~i~H~Dl~p  123 (211)
T PRK14879         73 NFIIVMEYIEGEPLKDLINSNG-----M-EELELSREIGRL-----------------------VGKLHSAGIIHGDLTT  123 (211)
T ss_pred             CCEEEEEEeCCcCHHHHHHhcc-----H-HHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCc
Confidence            889999999 889999886542     1 556666666666                       9999999999999999


Q ss_pred             CCe-------EEeecCCccc
Q psy2006         151 CDI-------RLIDFGSATF  163 (351)
Q Consensus       151 ~ni-------~l~Dfg~s~~  163 (351)
                      +|+       .++|||.+..
T Consensus       124 ~Nil~~~~~~~liDf~~a~~  143 (211)
T PRK14879        124 SNMILSGGKIYLIDFGLAEF  143 (211)
T ss_pred             ccEEEECCCEEEEECCcccC
Confidence            886       5689998865

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.58  E-value=1.9e-16  Score=142.73  Aligned_cols=202  Identities=14%  Similarity=0.097  Sum_probs=123.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCC-CCCC---CCcceeeeeeeEeeCC--
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGE-KDPN---GRHLCVKMLDWFDYHG--   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h-~~~~---g~~~Iv~l~~~f~~~~--   71 (351)
                      +.||.|+++.||.++|.++++.+|+|+....    ....+...+|.-....+.+ .+|.   -+..++-.+|.....+  
T Consensus        18 ~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~i~~~~   97 (288)
T PF14531_consen   18 RIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLRIPGKP   97 (288)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEEETTS-
T ss_pred             cccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEEEcCCC
Confidence            4699999999999999999999999999532    1223444444433333222 1111   0111444444444332  


Q ss_pred             ---------------eEEEEEeccCCCHHHHHHhc---CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHh
Q psy2006          72 ---------------HMCIAFEILGLSVFDFLKEN---NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIY  133 (351)
Q Consensus        72 ---------------~~~lV~E~~g~sL~~~l~~~---~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~  133 (351)
                                     ..+++|+-+.+||.+++..-   .....+..                     ......+..|++.
T Consensus        98 ~~~~~~~~~~~~~v~n~~~l~P~~~~dL~~~~~~l~~~~~~~~~l~---------------------~~arl~lT~Q~I~  156 (288)
T PF14531_consen   98 PFFERGPGQSIYWVLNRFLLMPRAQGDLQDLVEALFSRAQTHSPLA---------------------FAARLSLTVQMIR  156 (288)
T ss_dssp             SEEEECETTEEEEEESEEEEEE--SEEHHHHHHHHHHHTTTSHHHH---------------------HHHHHHHHHHHHH
T ss_pred             cceecCCCCccceeehhhhccchhhhcHHHHHHHHhhcccccchhH---------------------HHHHHHHHHHHHH
Confidence                           45889999999998886532   21100110                     1111233356666


Q ss_pred             hhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChh
Q psy2006         134 AVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLS  213 (351)
Q Consensus       134 ~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~  213 (351)
                      .+++||+.|++|+|+++.|+.+.                                                         
T Consensus       157 lvA~Lh~~GlVHgdi~~~nfll~---------------------------------------------------------  179 (288)
T PF14531_consen  157 LVANLHSYGLVHGDIKPENFLLD---------------------------------------------------------  179 (288)
T ss_dssp             HHHHHHHTTEEEST-SGGGEEE----------------------------------------------------------
T ss_pred             HHHHHhhcceEecccceeeEEEc---------------------------------------------------------
Confidence            69999999999999999999887                                                         


Q ss_pred             hhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecC----
Q psy2006         214 EALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILEL----  289 (351)
Q Consensus       214 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~----  289 (351)
                                                            ..+.+.|+||+.....+........+..|.+||.....    
T Consensus       180 --------------------------------------~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~  221 (288)
T PF14531_consen  180 --------------------------------------QDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFG  221 (288)
T ss_dssp             --------------------------------------TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCH
T ss_pred             --------------------------------------CCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccC
Confidence                                                  35789999998765544433333344678888866442    


Q ss_pred             ----CCCCccceeeeeeeeEeeccccccccccCC
Q psy2006         290 ----GWAQPCDVWSIGCIIFELYLGITLMARKTK  319 (351)
Q Consensus       290 ----~~~~~~DiwslG~~l~~l~tG~~pf~~~~~  319 (351)
                          .++.+.|.|+||+++|.+++|..||...+.
T Consensus       222 ~~~~~~t~~~DaW~LG~~ly~lWC~~lPf~~~~~  255 (288)
T PF14531_consen  222 QNNAPYTFATDAWQLGITLYSLWCGRLPFGLSSP  255 (288)
T ss_dssp             HSEEEE-HHHHHHHHHHHHHHHHHSS-STCCCGG
T ss_pred             cccceeeeccCHHHHHHHHHHHHHccCCCCCCCc
Confidence                357788999999999999999999987643

>KOG1166|consensus

Probab=99.58  E-value=4.8e-16  Score=158.54  Aligned_cols=190  Identities=14%  Similarity=0.159  Sum_probs=144.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhC---CCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIG---EKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~---h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||+|+||+||+|.... ++.||+|+=+-.....  +.-=.+++.+|+   .+.      |..+.......+.-+||+|
T Consensus       704 ~e~G~g~y~~vy~a~~~~-~~~~alK~e~P~~~WE--fYI~~q~~~RLk~~~~~~------~~~~~~a~~~~~~S~lv~e  774 (974)
T KOG1166|consen  704 KEIGEGSYGSVYVATHSN-GKLVALKVEKPPNPWE--FYICLQVMERLKPQMLPS------IMHISSAHVFQNASVLVSE  774 (974)
T ss_pred             eeeccccceEEEEeecCC-CcEEEEEeecCCCcee--eeehHHHHHhhchhhhcc------hHHHHHHHccCCcceeeee
Confidence            369999999999999866 9999999987532110  111123444443   012      7777777788888999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |. .|+|.+++...+  .+++..+--+..|++.-                       ++.||..+|||+||||+|.+|..
T Consensus       775 y~~~Gtlld~~N~~~--~m~e~lv~~~~~qml~i-----------------------ve~lH~~~IIHgDiKPDNfll~~  829 (974)
T KOG1166|consen  775 YSPYGTLLDLINTNK--VMDEYLVMFFSCQMLRI-----------------------VEHLHAMGIIHGDIKPDNFLLRR  829 (974)
T ss_pred             ccccccHHHhhccCC--CCCchhhhHHHHHHHHH-----------------------HHHHHhcceecccCCcceeEeec
Confidence            99 999999998544  57777777777777777                       99999999999999999998871


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                 . ..+                                                                
T Consensus       830 -----------~-~~~----------------------------------------------------------------  833 (974)
T KOG1166|consen  830 -----------E-ICA----------------------------------------------------------------  833 (974)
T ss_pred             -----------c-cCC----------------------------------------------------------------
Confidence                       0 000                                                                


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcce----ecc-ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATF----DDE-HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~----~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                  +.....++|+|||.+.-    .+. .....++|..+-++|...+++++..+|.+-++.+++.|+.|++
T Consensus       834 ------------~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~td~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y  901 (974)
T KOG1166|consen  834 ------------DSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHTDLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKY  901 (974)
T ss_pred             ------------CCcccceEEEecccceeeeEcCCCcEEeeeeccccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHH
Confidence                        00134689999998752    222 4456788899999999999999999999999999999999976


Q ss_pred             c
Q psy2006         313 L  313 (351)
Q Consensus       313 p  313 (351)
                      -
T Consensus       902 ~  902 (974)
T KOG1166|consen  902 M  902 (974)
T ss_pred             H
Confidence            5

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.55  E-value=4e-14  Score=122.58  Aligned_cols=114  Identities=14%  Similarity=0.027  Sum_probs=86.2

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecchh---------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNVE---------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      .||+|+||+||+|.  .+++.|++|+.....         ....++.+|+++++.+.+.+      +....-++...+..
T Consensus         1 ~ig~G~~~~vy~~~--~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~------i~~p~~~~~~~~~~   72 (199)
T TIGR03724         1 LIAKGAEAIIYLGD--FLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAG------VNTPVVYDVDPDNK   72 (199)
T ss_pred             CCCCCceEEEEEee--cCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCC------CCCCEEEEEECCCC
Confidence            48999999999998  678899999964321         11245678999999998765      33333344456677


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++||||+ |++|.+++.....         .++.|++.+                       +.++|+.|++|+|++++|
T Consensus        73 ~lv~e~~~g~~l~~~~~~~~~---------~~~~~i~~~-----------------------l~~lH~~gi~H~Dl~~~N  120 (199)
T TIGR03724        73 TIVMEYIEGKPLKDVIEEGND---------ELLREIGRL-----------------------VGKLHKAGIVHGDLTTSN  120 (199)
T ss_pred             EEEEEEECCccHHHHHhhcHH---------HHHHHHHHH-----------------------HHHHHHCCeecCCCCcce
Confidence            9999999 8899988755320         556666666                       999999999999999999


Q ss_pred             eEEe
Q psy2006         153 IRLI  156 (351)
Q Consensus       153 i~l~  156 (351)
                      +.+.
T Consensus       121 il~~  124 (199)
T TIGR03724       121 IIVR  124 (199)
T ss_pred             EEEE
Confidence            8664

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.53  E-value=5.4e-14  Score=121.85  Aligned_cols=115  Identities=17%  Similarity=0.161  Sum_probs=83.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-----------------------hhhHHHHHHHHHHHHhCCCCCCCCc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-----------------------KYREAARLEINALQKIGEKDPNGRH   58 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-----------------------~~~~~~~~E~~~l~~l~h~~~~g~~   58 (351)
                      ++||.|+||.||+|.+ .+++.||||++....                       .......+|..++..+.+.+..   
T Consensus        21 ~~i~~G~~g~Vy~~~~-~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~---   96 (198)
T cd05144          21 NQIGVGKESDVYLALD-PDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAALKALYEEGFP---   96 (198)
T ss_pred             CccccCcceEEEEEEc-CCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHHHHHHHcCCC---
Confidence            5799999999999987 489999999975421                       0112356789999999765422   


Q ss_pred             ceeeeeeeEeeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhc
Q psy2006          59 LCVKMLDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY  137 (351)
Q Consensus        59 ~Iv~l~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  137 (351)
                       +...++.    ...++||||+ |++|.+....        ..+..++.+++.+                       +.+
T Consensus        97 -v~~~~~~----~~~~lv~e~~~g~~L~~~~~~--------~~~~~~~~~i~~~-----------------------l~~  140 (198)
T cd05144          97 -VPKPIDW----NRHAVVMEYIDGVELYRVRVL--------EDPEEVLDEILEE-----------------------IVK  140 (198)
T ss_pred             -CCceeec----CCceEEEEEeCCcchhhcccc--------ccHHHHHHHHHHH-----------------------HHH
Confidence             5555542    4558999999 7787654321        2344555666655                       999


Q ss_pred             cccccccccccCCCCeEEe
Q psy2006         138 NNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus       138 lH~~~i~h~d~k~~ni~l~  156 (351)
                      +|+.|++|+|++|+|+.+.
T Consensus       141 lh~~gi~H~Dl~p~Nill~  159 (198)
T cd05144         141 AYKHGIIHGDLSEFNILVD  159 (198)
T ss_pred             HHHCCCCcCCCCcccEEEc
Confidence            9999999999999997554

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.52  E-value=7.3e-14  Score=138.97  Aligned_cols=114  Identities=11%  Similarity=-0.016  Sum_probs=87.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----h-----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----E-----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~-----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~   72 (351)
                      ++||+|+||+||+|.+  .++.+++|+....    .     ...+.+.+|+++++.+.|.+      |+....++.....
T Consensus       339 ~~iG~G~~g~Vy~~~~--~~~~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~------i~~p~~~~~~~~~  410 (535)
T PRK09605        339 HLIGKGAEADIKKGEY--LGRDAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAG------VPTPVIYDVDPEE  410 (535)
T ss_pred             ceeccCCcEEEEEEee--cCccceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccC------CCeeEEEEEeCCC
Confidence            5799999999999984  4444555543211    0     12345778999999998776      7776666666678


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      .++||||+ |++|.+++.          ....++.|++.+                       +.++|+.+++|||+||.
T Consensus       411 ~~lv~E~~~g~~L~~~l~----------~~~~~~~~i~~~-----------------------L~~lH~~giiHrDlkp~  457 (535)
T PRK09605        411 KTIVMEYIGGKDLKDVLE----------GNPELVRKVGEI-----------------------VAKLHKAGIVHGDLTTS  457 (535)
T ss_pred             CEEEEEecCCCcHHHHHH----------HHHHHHHHHHHH-----------------------HHHHHhCCCccCCCChH
Confidence            89999999 889998875          234566666666                       99999999999999999


Q ss_pred             CeEEe
Q psy2006         152 DIRLI  156 (351)
Q Consensus       152 ni~l~  156 (351)
                      |+.+.
T Consensus       458 NILl~  462 (535)
T PRK09605        458 NFIVR  462 (535)
T ss_pred             HEEEE
Confidence            98874

>KOG0195|consensus

Probab=99.51  E-value=8.8e-16  Score=133.63  Aligned_cols=195  Identities=14%  Similarity=0.168  Sum_probs=141.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      -||.+...|..|+|+  +.|..++.|+++..   ......+..|...|+.++|+|      |..+++.+..+.++.++..
T Consensus       196 tkl~e~hsgelwrgr--wqgndivakil~vr~~t~risrdfneefp~lrifshpn------ilpvlgacnsppnlv~isq  267 (448)
T KOG0195|consen  196 TKLAESHSGELWRGR--WQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHPN------ILPVLGACNSPPNLVIISQ  267 (448)
T ss_pred             hhhccCCCccccccc--ccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCCc------hhhhhhhccCCCCceEeee
Confidence            367888999999999  56777888988653   233456778999999999888      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ -|||+..++.....-....++.+++..++.|                       +.|||+-..+....         
T Consensus       268 ~mp~gslynvlhe~t~vvvd~sqav~faldiarg-----------------------maflhslep~ipr~---------  315 (448)
T KOG0195|consen  268 YMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARG-----------------------MAFLHSLEPMIPRF---------  315 (448)
T ss_pred             eccchHHHHHHhcCccEEEecchHHHHHHHHHhh-----------------------HHHHhhcchhhhhh---------
Confidence            99 8999999999877777788888888888887                       99999843221111         


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                         |+....++...+                                                 
T Consensus       316 -------------------~lns~hvmided-------------------------------------------------  327 (448)
T KOG0195|consen  316 -------------------YLNSKHVMIDED-------------------------------------------------  327 (448)
T ss_pred             -------------------hcccceEEecch-------------------------------------------------
Confidence                               111111111000                                                 


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCC---CCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGW---AQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~---~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ....+..+|..+++.....    .-.|.||+||.+...+-   -.++|+|||.+++||+.|.+.||
T Consensus       328 --------------ltarismad~kfsfqe~gr----~y~pawmspealqrkped~n~raadmwsfaillwel~trevpf  389 (448)
T KOG0195|consen  328 --------------LTARISMADTKFSFQEVGR----AYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPF  389 (448)
T ss_pred             --------------hhhheecccceeeeecccc----ccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhcccccc
Confidence                          0112333444343332222    23589999999987654   35689999999999999999999


Q ss_pred             cccCCCce
Q psy2006         315 ARKTKTKY  322 (351)
Q Consensus       315 ~~~~~~~~  322 (351)
                      ...+.+|.
T Consensus       390 adlspmec  397 (448)
T KOG0195|consen  390 ADLSPMEC  397 (448)
T ss_pred             ccCCchhh
Confidence            99887765

>KOG1240|consensus

Probab=99.49  E-value=1.4e-15  Score=153.34  Aligned_cols=121  Identities=12%  Similarity=0.158  Sum_probs=96.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||.+.|=+|.+|++.  ...|++|++.+..     +...+...|++ ...++++|      +..+.-+-..++..|||
T Consensus        29 ~~LGstRFlKv~r~k~~--eG~vVvKVFvk~~p~~sL~~~~qrL~~ik-~~l~~~pn------~lPfqk~~~t~kAAylv   99 (1431)
T KOG1240|consen   29 ENLGSTRFLKVARAKDR--EGLVVVKVFVKQDPTISLRPFKQRLEEIK-FALMKAPN------CLPFQKVLVTDKAAYLV   99 (1431)
T ss_pred             cccCchhhhhhhhccCC--CceEEEEEEeccCCCCCchHHHHHHHHHH-HHhhcCCc------ccchHHHHHhhHHHHHH
Confidence            56999999999999974  3449999997642     22344455666 55556666      88888777888899999


Q ss_pred             EeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          77 FEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        77 ~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      -+|+..+|+|.+..+.+                         +..-+.++++.|++.||.-||..||.|+|+|..||.+.
T Consensus       100 RqyvkhnLyDRlSTRPF-------------------------L~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiT  154 (1431)
T KOG1240|consen  100 RQYVKHNLYDRLSTRPF-------------------------LVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILIT  154 (1431)
T ss_pred             HHHHhhhhhhhhccchH-------------------------HHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEe
Confidence            99999999999987753                         33455677888888889999999999999999999887

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.45  E-value=3.9e-13  Score=115.15  Aligned_cols=129  Identities=16%  Similarity=0.120  Sum_probs=84.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhh----hH---------------------HHHHHHHHHHHhCCCCCCC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKY----RE---------------------AARLEINALQKIGEKDPNG   56 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~----~~---------------------~~~~E~~~l~~l~h~~~~g   56 (351)
                      +.||+|+||+||+|.+. +++.||||++......    ..                     ....|.+.+..+.+..-. 
T Consensus         3 ~~lg~G~~g~Vy~a~~~-~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~-   80 (187)
T cd05119           3 GPIGTGKEADVYLALDG-DGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVP-   80 (187)
T ss_pred             cccccccceeEEEEECC-CCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCC-
Confidence            57999999999999985 8999999998753210    01                     113566677776543211 


Q ss_pred             CcceeeeeeeEeeCCeEEEEEecc-CCCHH-HHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhh
Q psy2006          57 RHLCVKMLDWFDYHGHMCIAFEIL-GLSVF-DFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYA  134 (351)
Q Consensus        57 ~~~Iv~l~~~f~~~~~~~lV~E~~-g~sL~-~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (351)
                         +...+..    ...|+||||+ ++.+. ..+....   .. ..++.++.+++.+                       
T Consensus        81 ---~~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~---~~-~~~~~~~~~~~~~-----------------------  126 (187)
T cd05119          81 ---VPKPIDL----NRHVLVMEFIGGDGIPAPRLKDVR---LL-EDPEELYDQILEL-----------------------  126 (187)
T ss_pred             ---CCceEec----CCCEEEEEEeCCCCccChhhhhhh---hc-ccHHHHHHHHHHH-----------------------
Confidence               4444433    2469999999 53322 1111111   01 4455666666666                       


Q ss_pred             hhcccc-ccccccccCCCCe-------EEeecCCcccCCC
Q psy2006         135 VDYNNK-KKREVRRVRRCDI-------RLIDFGSATFDDE  166 (351)
Q Consensus       135 l~~lH~-~~i~h~d~k~~ni-------~l~Dfg~s~~~~~  166 (351)
                      +.++|. .+++|+|++++|+       +++|||.|...+.
T Consensus       127 l~~lh~~~~ivH~Dl~p~Nili~~~~~~liDfg~a~~~~~  166 (187)
T cd05119         127 MRKLYREAGLVHGDLSEYNILVDDGKVYIIDVPQAVEIDH  166 (187)
T ss_pred             HHHHhhccCcCcCCCChhhEEEECCcEEEEECcccccccC
Confidence            999999 9999999999886       6788998865433

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.39  E-value=4.6e-12  Score=112.94  Aligned_cols=118  Identities=14%  Similarity=0.020  Sum_probs=86.3

Q ss_pred             ccc-CcccceEEEEEEeecCcEEEEEEecch--------h------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeE
Q psy2006           3 SLN-CVASNHVCTNVVYEVDSVVALKIIKNV--------E------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWF   67 (351)
Q Consensus         3 ~iG-~G~~g~V~~~~~~~~~~~vAiK~~~~~--------~------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f   67 (351)
                      .|| .|+.|+||.+..  .++.+++|.+...        .      .....+.+|++++.+|.+.+.+    ++..+++.
T Consensus        38 ~lg~~~g~gtv~~v~~--~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~----vP~pl~~~  111 (239)
T PRK01723         38 VVGSAKGRGTTWFVQT--PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLP----VPRPIAAR  111 (239)
T ss_pred             eeecCCCCccEEEEEe--CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCC----CceeEeee
Confidence            578 899999999984  5888999988531        0      1224577899999999887744    56777665


Q ss_pred             eeCC----eEEEEEecc-C-CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc
Q psy2006          68 DYHG----HMCIAFEIL-G-LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK  141 (351)
Q Consensus        68 ~~~~----~~~lV~E~~-g-~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  141 (351)
                      ....    ..++|||++ | .+|.+++...   .+++..    +.|++.+                       +.++|+.
T Consensus       112 ~~~~~~~~~~~lV~e~l~G~~~L~~~l~~~---~l~~~~----~~~i~~~-----------------------l~~lH~~  161 (239)
T PRK01723        112 VVRHGLFYRADILIERIEGARDLVALLQEA---PLSEEQ----WQAIGQL-----------------------IARFHDA  161 (239)
T ss_pred             eeecCcceeeeEEEEecCCCCCHHHHHhcC---CCCHHH----HHHHHHH-----------------------HHHHHHC
Confidence            4433    346999999 5 5898887653   234332    4455555                       9999999


Q ss_pred             cccccccCCCCeEEe
Q psy2006         142 KREVRRVRRCDIRLI  156 (351)
Q Consensus       142 ~i~h~d~k~~ni~l~  156 (351)
                      |++|+|+|+.|+.+.
T Consensus       162 GI~HrDlkp~NILv~  176 (239)
T PRK01723        162 GVYHADLNAHNILLD  176 (239)
T ss_pred             CCCCCCCCchhEEEc
Confidence            999999999998765

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.38  E-value=3.7e-12  Score=104.14  Aligned_cols=117  Identities=19%  Similarity=0.090  Sum_probs=90.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +++||.|.++.||++.+  .++.+++|....... ...+..|+.+++.+.+.+..    +++++.++...+..+++|||+
T Consensus         3 ~~~i~~g~~~~v~~~~~--~~~~~~iK~~~~~~~-~~~~~~e~~~~~~l~~~~~~----~p~~~~~~~~~~~~~~v~e~~   75 (155)
T cd05120           3 IKLLKGGLTNRVYLLGT--KDEDYVLKINPSREK-GADREREVAILQLLARKGLP----VPKVLASGESDGWSYLLMEWI   75 (155)
T ss_pred             ceecccccccceEEEEe--cCCeEEEEecCCCCc-hhHHHHHHHHHHHHHHcCCC----CCeEEEEcCCCCccEEEEEec
Confidence            46899999999999996  448899999976433 45678899999999864222    889999998888999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc---ccccccccCCCCeEEe
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK---KKREVRRVRRCDIRLI  156 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~---~~i~h~d~k~~ni~l~  156 (351)
                       |.++..+         +......++.++..+                       +..+|.   .+++|+|+++.|+.+.
T Consensus        76 ~g~~~~~~---------~~~~~~~~~~~~~~~-----------------------l~~lh~~~~~~i~H~Dl~~~Nil~~  123 (155)
T cd05120          76 EGETLDEV---------SEEEKEDIAEQLAEL-----------------------LAKLHQLPLLVLCHGDLHPGNILVD  123 (155)
T ss_pred             CCeecccC---------CHHHHHHHHHHHHHH-----------------------HHHHhCCCceEEEecCCCcceEEEE
Confidence             5555543         333445555566555                       888887   4799999999998775

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG0590|consensus

Probab=99.36  E-value=1.9e-13  Score=136.39  Aligned_cols=199  Identities=17%  Similarity=0.160  Sum_probs=147.4

Q ss_pred             CccccCcccceEEEEEEee-cCcEEEEEEecchh---hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYE-VDSVVALKIIKNVE---KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~-~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++.||.|+|+.|-...+.. ....+|+|.+....   ....+...|..+-+.+. |.|      ++++++.....+..++
T Consensus        25 ~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n------~~~~~~~~~~~~~~~~   98 (601)
T KOG0590|consen   25 SRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSN------TVHMIEPSSSPRSYLL   98 (601)
T ss_pred             cccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCcccccccccccccc------ccccCCccCCCccccc
Confidence            3568999999999888643 45677777776532   22334445777776666 444      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccc-cccccccccCCCCe
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN-KKKREVRRVRRCDI  153 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH-~~~i~h~d~k~~ni  153 (351)
                      +++|. |+++++.+........+...+.                       .++.|+..++.|+| ..++.|+|++|+|.
T Consensus        99 ~~~~s~g~~~f~~i~~~~~~~~~~~~~~-----------------------~~~~ql~s~l~~~H~~~~~~h~~ikP~n~  155 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISHPDSTGTSSSSAS-----------------------RYLPQLNSGLSYLHPENGVTHRDIKPSNS  155 (601)
T ss_pred             ccCcccccccccccccCCccCCCCcchh-----------------------hhhhhhccCccccCcccccccCCCCCccc
Confidence            99999 9999988732221134444444                       44555555599999 99999999999976


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       156 ~l~-----------------------------------------------------------------------------  158 (601)
T KOG0590|consen  156 LLD-----------------------------------------------------------------------------  158 (601)
T ss_pred             hhc-----------------------------------------------------------------------------
Confidence            655                                                                             


Q ss_pred             chhhhhhccchhhhhhhcccc-ceeeeccCCcceecc------ccccccc-cceeeCceeeecCCC-CCccceeeeeeee
Q psy2006         234 TQADRILSSVSSLVMRRVRRC-DIRLIDFGSATFDDE------HHSTIVS-TRHYRAPEVILELGW-AQPCDVWSIGCII  304 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~-~vkl~dfg~~~~~~~------~~~~~~g-t~~y~aPE~~~~~~~-~~~~DiwslG~~l  304 (351)
                                        .+. .+++.|||++.....      .....+| ++.|+|||...+..+ .+..|+||+|+++
T Consensus       159 ------------------~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~~l  220 (601)
T KOG0590|consen  159 ------------------ESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGIVL  220 (601)
T ss_pred             ------------------cCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccccc
Confidence                              122 678899998865222      2234677 999999999988655 7889999999999


Q ss_pred             EeeccccccccccCCCcee
Q psy2006         305 FELYLGITLMARKTKTKYF  323 (351)
Q Consensus       305 ~~l~tG~~pf~~~~~~~~~  323 (351)
                      ..+++|..|+.-....+..
T Consensus       221 ~~~~~g~~p~~~~~~~~~~  239 (601)
T KOG0590|consen  221 SAMLTGELPWDFPSRKDGR  239 (601)
T ss_pred             cccccCCCCcccccccccc
Confidence            9999999999877655544

>KOG0661|consensus

Probab=99.31  E-value=4.4e-14  Score=131.45  Aligned_cols=101  Identities=33%  Similarity=0.543  Sum_probs=85.5

Q ss_pred             CCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecCC-CCCccce
Q psy2006         221 FDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILELG-WAQPCDV  297 (351)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~~-~~~~~Di  297 (351)
                      ++-+..-...|..+--|||++++|++.+.   ...+||+|||+|+-.  ..+-+..+-|.+|+|||++++.. |+.+.|+
T Consensus       117 ~QilqGL~hiHk~GfFHRDlKPENiLi~~---~~~iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~pvD~  193 (538)
T KOG0661|consen  117 YQILQGLAHIHKHGFFHRDLKPENILISG---NDVIKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSSPVDM  193 (538)
T ss_pred             HHHHHHHHHHHhcCcccccCChhheEecc---cceeEecccccccccccCCCcchhhhcccccchHHhhhccccCCchHH
Confidence            33444555688899999999999999875   468999999999863  34556788899999999998754 6999999


Q ss_pred             eeeeeeeEeeccccccccccCCCceee
Q psy2006         298 WSIGCIIFELYLGITLMARKTKTKYFY  324 (351)
Q Consensus       298 wslG~~l~~l~tG~~pf~~~~~~~~~~  324 (351)
                      |++||+++|+.+-+++|.|.++.+.++
T Consensus       194 wA~GcI~aEl~sLrPLFPG~sE~Dqi~  220 (538)
T KOG0661|consen  194 WAVGCIMAELYSLRPLFPGASEIDQIY  220 (538)
T ss_pred             HHHHHHHHHHHHhcccCCCCcHHHHHH
Confidence            999999999999999999999888765

>KOG1033|consensus

Probab=99.29  E-value=9.8e-14  Score=131.09  Aligned_cols=137  Identities=24%  Similarity=0.327  Sum_probs=107.0

Q ss_pred             eEEEEEecc-CCCHHHHHHhcCC-CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccC
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNY-LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR  149 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k  149 (351)
                      +++|.|+.| ..+|.++|.+... -.-+......++.|+..+                       ++|   ++.+|+|+|
T Consensus       330 ~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~-----------------------~~y---k~~ihrdlk  383 (516)
T KOG1033|consen  330 YLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPA-----------------------VEY---KGLIHRDLK  383 (516)
T ss_pred             chhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccc-----------------------hhh---ccchhhhcc
Confidence            799999999 8999999986532 234455566666666666                       999   999999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      +.||...|                                                                        
T Consensus       384 p~nif~~~------------------------------------------------------------------------  391 (516)
T KOG1033|consen  384 PSNIFFSD------------------------------------------------------------------------  391 (516)
T ss_pred             cccccccc------------------------------------------------------------------------
Confidence            99987662                                                                        


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceecc---------ccccccccceeeCceeeecCCCCCccceeee
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---------HHSTIVSTRHYRAPEVILELGWAQPCDVWSI  300 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  300 (351)
                                             ...+||.|||+......         ..+..+||.+||+||.+.+..|+.++|||+|
T Consensus       392 -----------------------d~q~kIgDFgl~ts~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaL  448 (516)
T KOG1033|consen  392 -----------------------DDQLKIGDFGLVTSQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYAL  448 (516)
T ss_pred             -----------------------chhhhhhhhhheeecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhH
Confidence                                   34678888888654211         3356789999999999999999999999999


Q ss_pred             eeeeEeecc-ccccccccCCCceeeecccC
Q psy2006         301 GCIIFELYL-GITLMARKTKTKYFYHGKLD  329 (351)
Q Consensus       301 G~~l~~l~t-G~~pf~~~~~~~~~~~~~~~  329 (351)
                      |++++|++. -...|.......-+.+|.+.
T Consensus       449 Glil~EL~~~f~T~~er~~t~~d~r~g~ip  478 (516)
T KOG1033|consen  449 GLILAELLIQFSTQFERIATLTDIRDGIIP  478 (516)
T ss_pred             HHHHHHHHHHhccHHHHHHhhhhhhcCCCC
Confidence            999999998 67777776666666665553

>KOG0601|consensus

Probab=99.27  E-value=6.4e-12  Score=120.80  Aligned_cols=279  Identities=15%  Similarity=0.079  Sum_probs=197.8

Q ss_pred             ccccC--cccceEEEEEE--eecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNC--VASNHVCTNVV--YEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~--G~~g~V~~~~~--~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ..+|.  |.+|.||.+..  ..++..+|+|.-+..   ......-.+|+.....+. .+.+    .++-...|+..++++
T Consensus       120 ~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~-~~~~----~v~~~~~~e~~~~lf  194 (524)
T KOG0601|consen  120 SRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKID-SHEN----PVRDSPAWEGSGILF  194 (524)
T ss_pred             cccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccC-cccc----ccccCcccccCCcce
Confidence            35788  99999999998  899999999995432   122233345665555553 3433    888899999999999


Q ss_pred             EEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHH----hhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          75 IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIY----AKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        75 lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      +-+|.|+.+|.++...-. .-+|...++....+...    |                       |.++|+.+++|-|+++
T Consensus       195 iqtE~~~~sl~~~~~~~~-~~~p~~~l~~~~~~~~~~~~~a-----------------------l~~~hs~~~~~~~~kp  250 (524)
T KOG0601|consen  195 IQTELCGESLQSYCHTPC-NFLPDNLLWNSLRDWLSRDVTA-----------------------LSHLHSNNIVHDDLKP  250 (524)
T ss_pred             eeeccccchhHHhhhccc-ccCCchhhhhHHhhhhhccccc-----------------------ccccCCCcccccccch
Confidence            999999999999987764 24777777777777777    6                       9999999999999997


Q ss_pred             CC---------eEEeecCCcccC-CCCc-------ccccCCCCccCCccccCCC--------------------------
Q psy2006         151 CD---------IRLIDFGSATFD-DEHH-------STIVSTRHYRAPERYMASD--------------------------  187 (351)
Q Consensus       151 ~n---------i~l~Dfg~s~~~-~~~~-------~~~~~~~~~~~pe~~~~~~--------------------------  187 (351)
                      .|         .++.|||+.... +...       ...-|...|++||......                          
T Consensus       251 ~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g  330 (524)
T KOG0601|consen  251 ANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVG  330 (524)
T ss_pred             hheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCC
Confidence            55         478889887542 2221       1124666799998432210                          


Q ss_pred             --------------h----hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhh
Q psy2006         188 --------------D----EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMR  249 (351)
Q Consensus       188 --------------~----~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (351)
                                    .    ..+..+...+..|+..++-.|+++++++++++..         ....+|.++++.|+....
T Consensus       331 ~~~~W~~~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~---------s~~~~~~d~~psni~i~~  401 (524)
T KOG0601|consen  331 KNSSWSQLRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIH---------SKLFVHLDVKPSNILISN  401 (524)
T ss_pred             CCCCccccccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhcccccc---------chhhhcccccccceeecc
Confidence                          0    1112334477888999999999999999988764         566677788888887765


Q ss_pred             hccccceeeeccCCcceeccccccccccceee--CceeeecCCCCCccceeeeeeeeEeeccccccccccCCC
Q psy2006         250 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYR--APEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKT  320 (351)
Q Consensus       250 ~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~--aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~  320 (351)
                      +.  +..++.||+......-......+...+.  ++.+....++..++|++|+|..+.+.++|...=...+..
T Consensus       402 ~~--~~~~~~~~~~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~~  472 (524)
T KOG0601|consen  402 DG--FFSKLGDFGCWTRLAFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQS  472 (524)
T ss_pred             ch--hhhhccccccccccceecccccccccccccchhhccccccccccccccccccccccccCcccCcccccc
Confidence            42  6778888887653222222233344444  555656678899999999999999999986655444333

>KOG4158|consensus

Probab=99.23  E-value=8.6e-12  Score=114.23  Aligned_cols=145  Identities=17%  Similarity=0.212  Sum_probs=109.6

Q ss_pred             CcceeeeeeeEeeCC---------------------------eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHH
Q psy2006          57 RHLCVKMLDWFDYHG---------------------------HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLI  109 (351)
Q Consensus        57 ~~~Iv~l~~~f~~~~---------------------------~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~  109 (351)
                      |.|||.++.+|.++-                           .+|+||.-...+|++++....   .+....+.++.|++
T Consensus       275 HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~tLr~yl~~~~---~s~r~~~~~laQlL  351 (598)
T KOG4158|consen  275 HPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQTLREYLWTRH---RSYRTGRVILAQLL  351 (598)
T ss_pred             CCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchhhHHHHHhcCC---CchHHHHHHHHHHH
Confidence            344999999997552                           699999999999999997753   45666777778888


Q ss_pred             HhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChh
Q psy2006         110 YAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDE  189 (351)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~  189 (351)
                      ++                       +.|||.+||.|||+|.+||.+-           ..                    
T Consensus       352 Ea-----------------------v~hL~~hgvAhRDlKSDNiL~E-----------ld--------------------  377 (598)
T KOG4158|consen  352 EA-----------------------VTHLHKHGVAHRDLKSDNILLE-----------LD--------------------  377 (598)
T ss_pred             HH-----------------------HHHHHHccchhhcccccceEEE-----------ec--------------------
Confidence            77                       9999999999999999999876           00                    


Q ss_pred             hHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc
Q psy2006         190 EHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE  269 (351)
Q Consensus       190 ~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~  269 (351)
                                                                                  ++.-..+.++|||.|.-...
T Consensus       378 ------------------------------------------------------------dD~~P~LVvaDFGCcLAd~~  397 (598)
T KOG4158|consen  378 ------------------------------------------------------------DDEIPQLVVADFGCCLADDN  397 (598)
T ss_pred             ------------------------------------------------------------CCCCcEEEEcccceeeeccc
Confidence                                                                        01235678999998743111


Q ss_pred             ---------ccccccccceeeCceeeecCC--C----CCccceeeeeeeeEeeccccccccccC
Q psy2006         270 ---------HHSTIVSTRHYRAPEVILELG--W----AQPCDVWSIGCIIFELYLGITLMARKT  318 (351)
Q Consensus       270 ---------~~~~~~gt~~y~aPE~~~~~~--~----~~~~DiwslG~~l~~l~tG~~pf~~~~  318 (351)
                               ..-..-|.-.-||||+....+  .    -.++|.|++|.+.||+.....||++..
T Consensus       398 hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rG  461 (598)
T KOG4158|consen  398 HGLQLPYESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRG  461 (598)
T ss_pred             cccccccccccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccc
Confidence                     111223455779999886543  1    357899999999999999999999843

>KOG0615|consensus

Probab=99.20  E-value=2.7e-11  Score=111.29  Aligned_cols=112  Identities=25%  Similarity=0.395  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccc-cccCCCCeEEeecCCcccC--CCCcccccCCC
Q psy2006          99 DQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREV-RRVRRCDIRLIDFGSATFD--DEHHSTIVSTR  175 (351)
Q Consensus        99 ~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h-~d~k~~ni~l~Dfg~s~~~--~~~~~~~~~~~  175 (351)
                      ...+.++..+..-|.+|+.|.+...=                 +|+. -|-.+.-+|++|||+|+..  .....++||||
T Consensus       280 ~~f~Qll~avkYLH~~GI~HRDiKPe-----------------NILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTp  342 (475)
T KOG0615|consen  280 LLFKQLLTAVKYLHSQGIIHRDIKPE-----------------NILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTP  342 (475)
T ss_pred             HHHHHHHHHHHHHHHcCcccccCCcc-----------------eEEeccCCcceEEEecccchhhccccceehhhhcCCc
Confidence            34566677777766666655553222                 2222 1223455899999999875  55578899999


Q ss_pred             CccCCccccCC----------------------------------------------------ChhhHHHHHHHHHHhhc
Q psy2006         176 HYRAPERYMAS----------------------------------------------------DDEEHRQLFDLISKMLE  203 (351)
Q Consensus       176 ~~~~pe~~~~~----------------------------------------------------~~~~~~~~~~~i~~~L~  203 (351)
                      .|+|||.+...                                                    -...+++..++|..||.
T Consensus       343 sYvAPEVl~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~sl~eQI~~G~y~f~p~~w~~Iseea~dlI~~mL~  422 (475)
T KOG0615|consen  343 SYVAPEVLASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPSLKEQILKGRYAFGPLQWDRISEEALDLINWMLV  422 (475)
T ss_pred             cccChhheecCCeecccchheeeeccceEEEEeccCCCcccccCCccHHHHHhcCcccccChhhhhhhHHHHHHHHHhhE
Confidence            99999965321                                                    01345778899999999


Q ss_pred             cCCCCCCChhhhhcCCCCCCCCch
Q psy2006         204 YEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       204 ~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      .||++|+|++|+|+||||+..+..
T Consensus       423 VdP~~R~s~~eaL~hpW~~~~~~~  446 (475)
T KOG0615|consen  423 VDPENRPSADEALNHPWFKDAPCL  446 (475)
T ss_pred             eCcccCcCHHHHhcChhhhccccc
Confidence            999999999999999999877643

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.08  E-value=6.7e-10  Score=107.54  Aligned_cols=125  Identities=12%  Similarity=0.067  Sum_probs=75.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hh---------------------------------hH------HHH
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KY---------------------------------RE------AAR   40 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~---------------------------------~~------~~~   40 (351)
                      ++||.|++|.||+|+. .+|+.||||+....-  ..                                 ..      .+.
T Consensus       123 ~plasaSigQVh~A~l-~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~  201 (437)
T TIGR01982       123 KPLAAASIAQVHRARL-VDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLR  201 (437)
T ss_pred             cceeeeehhheEEEEe-cCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHH
Confidence            4699999999999997 589999999985320  00                                 00      123


Q ss_pred             HHHHHHHHhCCCCCC-CCcceeeeeeeEeeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCC
Q psy2006          41 LEINALQKIGEKDPN-GRHLCVKMLDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLP  118 (351)
Q Consensus        41 ~E~~~l~~l~h~~~~-g~~~Iv~l~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~  118 (351)
                      +|++.+.++.....+ ..-.|..++..  .....+|||||+ |.+|.++...... ..+   ...++.+++..       
T Consensus       202 ~Ea~n~~~~~~~~~~~~~v~vP~v~~~--~~~~~vLvmE~i~G~~L~~~~~~~~~-~~~---~~~ia~~~~~~-------  268 (437)
T TIGR01982       202 REAANASELGENFKNDPGVYVPEVYWD--RTSERVLTMEWIDGIPLSDIAALDEA-GLD---RKALAENLARS-------  268 (437)
T ss_pred             HHHHHHHHHHHhcCCCCCEEeCCEehh--hcCCceEEEEeECCcccccHHHHHhc-CCC---HHHHHHHHHHH-------
Confidence            466666666432111 11113344332  234579999999 8899887654311 111   22233333221       


Q ss_pred             CchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006         119 YSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus       119 ~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                                     .+..+|..|++|+|++|+|+.+
T Consensus       269 ---------------~l~ql~~~g~~H~D~hPgNilv  290 (437)
T TIGR01982       269 ---------------FLNQVLRDGFFHADLHPGNIFV  290 (437)
T ss_pred             ---------------HHHHHHhCCceeCCCCcccEEE
Confidence                           1456788999999999999744

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.08  E-value=2.1e-10  Score=112.66  Aligned_cols=30  Identities=13%  Similarity=0.154  Sum_probs=27.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKN   31 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~   31 (351)
                      ++||.|++|.||+|+.+.+|+.||||+...
T Consensus       125 ~PlasaSiaQVh~A~l~~~G~~VAVKV~rP  154 (537)
T PRK04750        125 KPLASASIAQVHFARLKDNGREVVVKVLRP  154 (537)
T ss_pred             hhhcCCCccEEEEEEECCCCCEEEEEEeCc
Confidence            479999999999999977799999999963

>cd05151 ChoK Choline Kinase (ChoK)

Probab=99.04  E-value=1e-09  Score=92.25  Aligned_cols=121  Identities=12%  Similarity=0.006  Sum_probs=83.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +++|+.|.++.||++..  .++.|++|+.............|+.+++.+.+...     +.+++....  ..-++|||++
T Consensus         3 ~~~l~~G~~~~vy~~~~--~~~~~~lK~~~~~~~~~~~~~~E~~~l~~l~~~~~-----~P~~~~~~~--~~~~lv~e~i   73 (170)
T cd05151           3 ISPLKGGMTNKNYRVEV--ANKKYVVRIPGNGTELLINRENEAENSKLAAEAGI-----GPKLYYFDP--ETGVLITEFI   73 (170)
T ss_pred             eeecCCcccCceEEEEE--CCeEEEEEeCCCCcccccCHHHHHHHHHHHHHhCC-----CCceEEEeC--CCCeEEEEec
Confidence            47899999999999984  58889999986543223345789999999975441     445555443  3457999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccc-----cccccCCCCe-
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKR-----EVRRVRRCDI-  153 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i-----~h~d~k~~ni-  153 (351)
                       |.++.+.    .      ......+.++..+                       +..||+.++     +|+|++++|+ 
T Consensus        74 ~G~~l~~~----~------~~~~~~~~~l~~~-----------------------l~~LH~~~~~~~~~~HgD~~~~Nil  120 (170)
T cd05151          74 EGSELLTE----D------FSDPENLEKIAKL-----------------------LKKLHSSPLPDLVPCHNDLLPGNFL  120 (170)
T ss_pred             CCCccccc----c------ccCHHHHHHHHHH-----------------------HHHHhCCCCCCceeecCCCCcCcEE
Confidence             6666532    0      0112334455555                       888998875     9999999996 


Q ss_pred             ------EEeecCCccc
Q psy2006         154 ------RLIDFGSATF  163 (351)
Q Consensus       154 ------~l~Dfg~s~~  163 (351)
                            .++|||.+..
T Consensus       121 ~~~~~~~liDf~~a~~  136 (170)
T cd05151         121 LDDGRLWLIDWEYAGM  136 (170)
T ss_pred             EECCeEEEEecccccC
Confidence                  4678887654

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0660|consensus

Probab=99.02  E-value=2.1e-10  Score=103.96  Aligned_cols=78  Identities=37%  Similarity=0.666  Sum_probs=61.7

Q ss_pred             CCCeEEeecCCcccC-----CCCcccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD-----DEHHSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~-----~~~~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      ++.+|++|||+|+..     ++..++...|.||+|||.....                                      
T Consensus       161 ~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d~v~Ql~lI  240 (359)
T KOG0660|consen  161 DCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLLNSSEYTKAIDIWSVGCILAEMLTGKPLFPGKDYVHQLQLI  240 (359)
T ss_pred             CCCEEeccccceeeccccCcccchhcceeeeeecCHHHHhccccccchhhhhhhhHHHHHHHcCCCCCCCCchHHHHHHH
Confidence            455899999999886     4556888999999999943210                                      


Q ss_pred             --------------------------------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         187 --------------------------------------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       187 --------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                                                            .+..++.+++++.+||.+||.+|+|++|+|+|||+......
T Consensus       241 ~~~lGtP~~e~l~~i~s~~ar~yi~slp~~p~~~f~~~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp  319 (359)
T KOG0660|consen  241 LELLGTPSEEDLQKIRSEKARPYIKSLPQIPKQPFSSIFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDP  319 (359)
T ss_pred             HHhcCCCCHHHHHHhccHHHHHHHHhCCCCCCCCHHHHcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCC
Confidence                                                  11233668899999999999999999999999999765543

>KOG0599|consensus

Probab=98.99  E-value=2e-10  Score=100.58  Aligned_cols=75  Identities=36%  Similarity=0.569  Sum_probs=60.8

Q ss_pred             CCCCeEEeecCCccc--CCCCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         149 RRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~--~~~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .+.||+|+|||+|+.  ..+..+..||||.|++||.+...                                        
T Consensus       158 dn~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtikC~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRkQmlML  237 (411)
T KOG0599|consen  158 DNMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIKCSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRKQMLML  237 (411)
T ss_pred             cccceEEeccceeeccCCchhHHHhcCCCcccChhheeeecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence            356799999999976  45557789999999999954311                                        


Q ss_pred             -----------C---hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         187 -----------D---DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       187 -----------~---~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                                 .   .+.+...+|+|+++|..||.+|.|+.|+|+||||.+
T Consensus       238 R~ImeGkyqF~speWadis~~~KdLIsrlLqVdp~~Ritake~LaHpff~q  288 (411)
T KOG0599|consen  238 RMIMEGKYQFRSPEWADISATVKDLISRLLQVDPTKRITAKEALAHPFFIQ  288 (411)
T ss_pred             HHHHhcccccCCcchhhccccHHHHHHHHHeeCchhcccHHHHhcChHHHH
Confidence                       0   123466889999999999999999999999999954

>KOG0575|consensus

Probab=98.99  E-value=2.6e-10  Score=109.53  Aligned_cols=72  Identities=42%  Similarity=0.578  Sum_probs=60.4

Q ss_pred             CCeEEeecCCcccCC---CCcccccCCCCccCCccccCC-----------------------------------------
Q psy2006         151 CDIRLIDFGSATFDD---EHHSTIVSTRHYRAPERYMAS-----------------------------------------  186 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~---~~~~~~~~~~~~~~pe~~~~~-----------------------------------------  186 (351)
                      -|+||+|||+|....   +...+.||||.|.|||++...                                         
T Consensus       155 ~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHsfEvDiWSlGcvmYtLL~G~PPFetk~vkety~~Ik~~~  234 (592)
T KOG0575|consen  155 MNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHSFEVDIWSLGCVMYTLLVGRPPFETKTVKETYNKIKLNE  234 (592)
T ss_pred             CcEEecccceeeeecCcccccceecCCCcccChhHhccCCCCCchhhhhhhhHHHhhhhCCCCcccchHHHHHHHHHhcC
Confidence            479999999997633   667889999999999966532                                         


Q ss_pred             ---ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCC
Q psy2006         187 ---DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFD  222 (351)
Q Consensus       187 ---~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~  222 (351)
                         +...+.++.++|.+||..+|.+|||++++|.|+||.
T Consensus       235 Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~  273 (592)
T KOG0575|consen  235 YSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLDHPFFK  273 (592)
T ss_pred             cccccccCHHHHHHHHHHhcCCcccCCCHHHHhcCHhhh
Confidence               223456788999999999999999999999999994

>KOG0581|consensus

Probab=98.98  E-value=2.8e-10  Score=103.57  Aligned_cols=77  Identities=30%  Similarity=0.508  Sum_probs=63.4

Q ss_pred             CCCeEEeecCCccc-CCCCcccccCCCCccCCccccCC------------------------------------------
Q psy2006         150 RCDIRLIDFGSATF-DDEHHSTIVSTRHYRAPERYMAS------------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~-~~~~~~~~~~~~~~~~pe~~~~~------------------------------------------  186 (351)
                      .++|||+|||.|.. .+....++.||..||+||.+.+.                                          
T Consensus       215 kGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDIWSLGLsllE~a~GrfP~~~~~~~~~~~~~Ll~~I  294 (364)
T KOG0581|consen  215 KGEVKICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDIWSLGLSLLELAIGRFPYPPPNPPYLDIFELLCAI  294 (364)
T ss_pred             CCCEEeccccccHHhhhhhcccccccccccChhhhcCCcCCcccceecccHHHHHHhhCCCCCCCcCCCCCCHHHHHHHH
Confidence            57799999999977 45566889999999999955432                                          


Q ss_pred             --------Ch-hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         187 --------DD-EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       187 --------~~-~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                              +. .-++++.+||..||.+||.+|++++++|+|||+.....
T Consensus       295 v~~ppP~lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~~~~  343 (364)
T KOG0581|consen  295 VDEPPPRLPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQHPFIKKFED  343 (364)
T ss_pred             hcCCCCCCCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcCHHHhhccc
Confidence                    11 13577999999999999999999999999999976553

>KOG0606|consensus

Probab=98.97  E-value=8.4e-11  Score=119.19  Aligned_cols=233  Identities=17%  Similarity=0.201  Sum_probs=153.2

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecchhhh----hHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNVEKY----REAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~----~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      .+-.|+++.++.+.-..++...++|+.......    .+...++-+++-...++-      +++-.-.|.-..-+.||++
T Consensus       811 p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~------v~~~~~s~~~rsP~~L~~~  884 (1205)
T KOG0606|consen  811 PSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPA------VVRSFPSFPCRSPLPLVGH  884 (1205)
T ss_pred             cccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCc------eecccCCCCCCCCcchhhH
Confidence            466799999999997778888888888654322    222333333333222222      5544444666668999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe----
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI----  153 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni----  153 (351)
                      |+ +++|...++..+  ......++.....+..+                       +++||+..+.|+|.++.++    
T Consensus       885 ~~~~~~~~Skl~~~~--~~saepaRs~i~~~vqs-----------------------~e~L~s~~r~h~~~~p~~~l~~~  939 (1205)
T KOG0606|consen  885 YLNGGDLPSKLHNSG--CLSAEPARSPILERVQS-----------------------LESLHSSLRKHRDLKPDSLLIAY  939 (1205)
T ss_pred             HhccCCchhhhhcCC--CcccccccchhHHHHhh-----------------------hhccccchhhcccccccchhhcc
Confidence            99 889999988875  44555566666655555                       9999998899999997665    


Q ss_pred             ----EEeecCC-cccCCCCcc-cccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         154 ----RLIDFGS-ATFDDEHHS-TIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       154 ----~l~Dfg~-s~~~~~~~~-~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                          .+.|||+ ++..--... +..|.                                                     
T Consensus       940 ~gh~~l~~~~t~~~vg~~~p~~~~sg~-----------------------------------------------------  966 (1205)
T KOG0606|consen  940 DGHRPLTDFGTLSKVGLIPPTTDLSGP-----------------------------------------------------  966 (1205)
T ss_pred             cCCcccCccccccccccccCcCCcccc-----------------------------------------------------
Confidence                4555552 211111000 00000                                                     


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcce-------eccccccccccceeeCceeeecCCCCCccceeee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF-------DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSI  300 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~-------~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  300 (351)
                                               ...+..-.++....       .........||+.|.+||...+......+|+|++
T Consensus       967 -------------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~ 1021 (1205)
T KOG0606|consen  967 -------------------------SSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSS 1021 (1205)
T ss_pred             -------------------------cccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhh
Confidence                                     00000001111100       1122345788999999999999999999999999


Q ss_pred             eeeeEeeccccccccccCCCceee---ecccCCcccccccccccccCccC
Q psy2006         301 GCIIFELYLGITLMARKTKTKYFY---HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       301 G~~l~~l~tG~~pf~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      |+++++.++|.+||+..+.+++|.   .+++.|..-+.+   .+.++.+|
T Consensus      1022 g~~l~e~l~g~pp~na~tpq~~f~ni~~~~~~~p~g~~~---~s~~aq~~ 1068 (1205)
T KOG0606|consen 1022 GVCLFEVLTGIPPFNAETPQQIFENILNRDIPWPEGPEE---GSYEAQDL 1068 (1205)
T ss_pred             hhhhhhhhcCCCCCCCcchhhhhhccccCCCCCCCCccc---cChhhhhh
Confidence            999999999999999999999985   588888887774   44444443

>KOG1023|consensus

Probab=98.96  E-value=3.3e-10  Score=108.88  Aligned_cols=147  Identities=16%  Similarity=0.236  Sum_probs=114.0

Q ss_pred             HHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHH
Q psy2006          47 QKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVR  125 (351)
Q Consensus        47 ~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~  125 (351)
                      +.+.|.|      +.++++....+.++++|.+|| -|+|+|.+.... ..++.-..-.+++.+..|              
T Consensus         2 ~~l~h~n------~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~-~~~d~~F~~s~~rdi~~G--------------   60 (484)
T KOG1023|consen    2 RQLDHDN------LNKFIGASVDGPEMIVIWEYCSRGSLLDILSNED-IKLDYFFILSFIRDISKG--------------   60 (484)
T ss_pred             cccchhh------hhhheeeEecCCceEEEEeeecCccHHhHHhccc-cCccHHHHHHHHHHHHHH--------------
Confidence            4566666      999999999999999999999 899999998743 456666666666666666              


Q ss_pred             HHhHhHHhhhhccccccc-cccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhcc
Q psy2006         126 HMSYQLIYAVDYNNKKKR-EVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEY  204 (351)
Q Consensus       126 ~~~~~~~~~l~~lH~~~i-~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~  204 (351)
                               +.|+|...+ .|+.++..|+.+.                                                
T Consensus        61 ---------l~ylh~s~i~~hg~l~s~nClvd------------------------------------------------   83 (484)
T KOG1023|consen   61 ---------LAYLHNSPIGYHGALKSSNCLVD------------------------------------------------   83 (484)
T ss_pred             ---------HHHHhcCcceeeeeeccccceee------------------------------------------------
Confidence                     999998765 8999998887665                                                


Q ss_pred             CCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccce
Q psy2006         205 EPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRH  279 (351)
Q Consensus       205 ~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~  279 (351)
                                                                     .+..+|++|||+......     ......-...
T Consensus        84 -----------------------------------------------~~w~lklt~~Gl~~~~~~~~~~~~~~~~~~~~l  116 (484)
T KOG1023|consen   84 -----------------------------------------------SRWVLKLTDFGLNSLLEETAEPEAHHPIRKALL  116 (484)
T ss_pred             -----------------------------------------------eeEEEEechhhhcccccccccccccchhHHHHh
Confidence                                                           467899999998765432     1111222357


Q ss_pred             eeCceeeecCC-------CCCccceeeeeeeeEeeccccccccccC
Q psy2006         280 YRAPEVILELG-------WAQPCDVWSIGCIIFELYLGITLMARKT  318 (351)
Q Consensus       280 y~aPE~~~~~~-------~~~~~DiwslG~~l~~l~tG~~pf~~~~  318 (351)
                      |.|||.+....       .+.++|+||+|++++|+++...||+...
T Consensus       117 w~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~  162 (484)
T KOG1023|consen  117 WTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRN  162 (484)
T ss_pred             ccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCcccccc
Confidence            89999997631       3667999999999999999999998744

>KOG0671|consensus

Probab=98.94  E-value=1.1e-09  Score=99.98  Aligned_cols=80  Identities=64%  Similarity=1.056  Sum_probs=68.0

Q ss_pred             cccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCC---------------------------------------
Q psy2006         146 RRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS---------------------------------------  186 (351)
Q Consensus       146 ~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~---------------------------------------  186 (351)
                      +-+|..+|+++|||-|+...+.++....|..|+|||.+++.                                       
T Consensus       244 r~~ks~~I~vIDFGsAtf~~e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHen~EHLaMMer  323 (415)
T KOG0671|consen  244 RPLKSTAIKVIDFGSATFDHEHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHENLEHLAMMER  323 (415)
T ss_pred             ccCCCcceEEEecCCcceeccCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCCcHHHHHHHHH
Confidence            45567789999999999999999999999999999965532                                       


Q ss_pred             ---------------------------------------------------ChhhHHHHHHHHHHhhccCCCCCCChhhh
Q psy2006         187 ---------------------------------------------------DDEEHRQLFDLISKMLEYEPSERISLSEA  215 (351)
Q Consensus       187 ---------------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~  215 (351)
                                                                         .+.+..+++|++++||.+||.+|+|+.|+
T Consensus       324 IlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EA  403 (415)
T KOG0671|consen  324 ILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREA  403 (415)
T ss_pred             hhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHH
Confidence                                                               11233468899999999999999999999


Q ss_pred             hcCCCCCCCC
Q psy2006         216 LRHPFFDKLP  225 (351)
Q Consensus       216 l~~~~~~~~~  225 (351)
                      |.||||+.+.
T Consensus       404 L~HpFF~~~~  413 (415)
T KOG0671|consen  404 LSHPFFARLT  413 (415)
T ss_pred             hcCHHhhcCC
Confidence            9999998765

>KOG0578|consensus

Probab=98.93  E-value=6.8e-10  Score=105.89  Aligned_cols=89  Identities=26%  Similarity=0.355  Sum_probs=70.6

Q ss_pred             hhccccccccccccCCCCeEEeecCCcccCCC---CcccccCCCCccCCccccCC-------------------------
Q psy2006         135 VDYNNKKKREVRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPERYMAS-------------------------  186 (351)
Q Consensus       135 l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~---~~~~~~~~~~~~~pe~~~~~-------------------------  186 (351)
                      +.+.+-+--.++.-+.+++||+|||+|.....   ...+-.|||.|+|||++...                         
T Consensus       390 IiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVDIWSLGIMaIEMveGEPPY  469 (550)
T KOG0578|consen  390 IIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVDIWSLGIMAIEMVEGEPPY  469 (550)
T ss_pred             eeeeccccceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCccccchhhhhHHHHHhcCCCCc
Confidence            44544466678888899999999999976322   35667899999999965431                         


Q ss_pred             ----------------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         187 ----------------------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       187 ----------------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                                            .+..+..+.+|+.+||..|+.+|++|.|+|+||||+.
T Consensus       470 lnE~PlrAlyLIa~ng~P~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~HpFl~~  528 (550)
T KOG0578|consen  470 LNENPLRALYLIATNGTPKLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLEHPFLKM  528 (550)
T ss_pred             cCCChHHHHHHHhhcCCCCcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhcChhhhh
Confidence                                  1234577899999999999999999999999999944

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.91  E-value=6.6e-09  Score=89.18  Aligned_cols=132  Identities=13%  Similarity=0.168  Sum_probs=89.1

Q ss_pred             ccccCcccceEEEEEEee------cCcEEEEEEecchh--------------h---------hhH----HHHHHHHHHHH
Q psy2006           2 CSLNCVASNHVCTNVVYE------VDSVVALKIIKNVE--------------K---------YRE----AARLEINALQK   48 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~------~~~~vAiK~~~~~~--------------~---------~~~----~~~~E~~~l~~   48 (351)
                      ..||.|-=+.||.|....      .+..+|+|+++...              .         ..+    .+.+|.+.|++
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            358999999999998543      35899999996321              0         011    23489999999


Q ss_pred             hCCCCCCCCcceeeeeeeEeeCCeEEEEEeccCCC-HHH-HHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHH
Q psy2006          49 IGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS-VFD-FLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRH  126 (351)
Q Consensus        49 l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g~s-L~~-~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~  126 (351)
                      +...+-+    |..++++    ..-+|||||++++ +.. .++..   .+++..+..+..+++.+               
T Consensus        83 l~~~Gv~----vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~---~~~~~~~~~i~~~i~~~---------------  136 (197)
T cd05146          83 MQKAGIP----CPEVVVL----KKHVLVMSFIGDDQVPAPKLKDA---KLNDEEMKNAYYQVLSM---------------  136 (197)
T ss_pred             HHHcCCC----CCeEEEe----cCCEEEEEEcCCCCccchhhhcc---ccCHHHHHHHHHHHHHH---------------
Confidence            9765544    7888865    4668999999653 221 12221   23334444555555555               


Q ss_pred             HhHhHHhhhhcc-ccccccccccCCCC-------eEEeecCCcccCCCC
Q psy2006         127 MSYQLIYAVDYN-NKKKREVRRVRRCD-------IRLIDFGSATFDDEH  167 (351)
Q Consensus       127 ~~~~~~~~l~~l-H~~~i~h~d~k~~n-------i~l~Dfg~s~~~~~~  167 (351)
                              +..+ |..|++|+|+++.|       +.++|||.|...+.+
T Consensus       137 --------l~~l~H~~glVHGDLs~~NIL~~~~~v~iIDF~qav~~~hp  177 (197)
T cd05146         137 --------MKQLYKECNLVHADLSEYNMLWHDGKVWFIDVSQSVEPTHP  177 (197)
T ss_pred             --------HHHHHHhCCeecCCCCHHHEEEECCcEEEEECCCceeCCCC
Confidence                    8887 89999999999655       588999988765443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>KOG0588|consensus

Probab=98.90  E-value=2.5e-09  Score=103.85  Aligned_cols=105  Identities=28%  Similarity=0.459  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc---ccccccCCCCeEEeecCCcccC--CCCcccccCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK---REVRRVRRCDIRLIDFGSATFD--DEHHSTIVST  174 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~---i~h~d~k~~ni~l~Dfg~s~~~--~~~~~~~~~~  174 (351)
                      ..+.|+..+...                     +++..||..-   -+..|. ..||||.|||+|..+  +.-..+.||+
T Consensus       117 ff~QIi~gv~yC---------------------H~~~icHRDLKpENlLLd~-~~nIKIADFGMAsLe~~gklLeTSCGS  174 (786)
T KOG0588|consen  117 FFRQILDGVSYC---------------------HAFNICHRDLKPENLLLDV-KNNIKIADFGMASLEVPGKLLETSCGS  174 (786)
T ss_pred             HHHHHHHHHHHH---------------------hhhcceeccCCchhhhhhc-ccCEeeeccceeecccCCccccccCCC
Confidence            356777777776                     3466666522   223343 345999999999764  3446678999


Q ss_pred             CCccCCccccCCC---------------------------------------------hhhHHHHHHHHHHhhccCCCCC
Q psy2006         175 RHYRAPERYMASD---------------------------------------------DEEHRQLFDLISKMLEYEPSER  209 (351)
Q Consensus       175 ~~~~~pe~~~~~~---------------------------------------------~~~~~~~~~~i~~~L~~~p~~R  209 (351)
                      |.|.+||.+.+..                                             ...+.++.+||++||..||.+|
T Consensus       175 PHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdNir~LLlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~~R  254 (786)
T KOG0588|consen  175 PHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDNIRVLLLKVQRGVFEMPSNISSEAQDLLRRMLDVDPSTR  254 (786)
T ss_pred             cccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCccHHHHHHHHHcCcccCCCcCCHHHHHHHHHHhccCcccc
Confidence            9999999876541                                             2334678899999999999999


Q ss_pred             CChhhhhcCCCCCCCCc
Q psy2006         210 ISLSEALRHPFFDKLPS  226 (351)
Q Consensus       210 ~t~~e~l~~~~~~~~~~  226 (351)
                      .|.++++.|||+...+.
T Consensus       255 iT~~eI~kHP~l~g~~~  271 (786)
T KOG0588|consen  255 ITTEEILKHPFLSGYTS  271 (786)
T ss_pred             ccHHHHhhCchhhcCCC
Confidence            99999999999976443

>KOG0033|consensus

Probab=98.89  E-value=1.2e-09  Score=94.42  Aligned_cols=74  Identities=31%  Similarity=0.463  Sum_probs=59.3

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      ..-+||+|||+|.+..  ....++.|||.|++||.+...+                                        
T Consensus       149 ~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy~kpvDiW~cGViLfiLL~G~~PF~~~~~~rlye~I~~g~  228 (355)
T KOG0033|consen  149 GAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYEQIKAGA  228 (355)
T ss_pred             CCceeecccceEEEeCCccccccccCCCcccCHHHhhcCCCCCcchhhhhhHHHHHHHhCCCCCCCccHHHHHHHHhccc
Confidence            3458999999997743  3356789999999999543220                                        


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                              +..++.+.+++++||..||.+|.|+.|.|+|||+.+
T Consensus       229 yd~~~~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~  272 (355)
T KOG0033|consen  229 YDYPSPEWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPWICN  272 (355)
T ss_pred             cCCCCcccCcCCHHHHHHHHHHhccChhhhccHHHHhCCchhcc
Confidence                    123477889999999999999999999999999965

>KOG3087|consensus

Probab=98.83  E-value=5.2e-08  Score=81.29  Aligned_cols=132  Identities=14%  Similarity=0.018  Sum_probs=96.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---------hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---------EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---------~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      ++.|-+|+=+.|+++.  ..|+...||.=-..         .-...+..+|+++|.++.-..      |.-..-+|.+..
T Consensus        12 l~likQGAEArv~~~~--~~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~G------I~~P~l~~~D~~   83 (229)
T KOG3087|consen   12 LELIKQGAEARVPRGS--FSGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALG------IPAPRLIFIDTY   83 (229)
T ss_pred             ceeeeccceeeEeeec--cCCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhC------CCCceEEEEecC
Confidence            3567789999999999  78998888875321         123456678999999886544      555555677777


Q ss_pred             eEEEEEeccCC--CHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccC
Q psy2006          72 HMCIAFEILGL--SVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR  149 (351)
Q Consensus        72 ~~~lV~E~~g~--sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k  149 (351)
                      .-+|+|||..|  ++.+++...............+++++-+.                       +.-||..+++|+|+.
T Consensus        84 ~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~-----------------------igklH~ndiiHGDLT  140 (229)
T KOG3087|consen   84 GGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGEL-----------------------IGKLHDNDIIHGDLT  140 (229)
T ss_pred             CCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHH-----------------------HHHhhhCCeeccccc
Confidence            88899999966  89999887753322222225556655555                       899999999999999


Q ss_pred             CCCe-----------EEeecCCccc
Q psy2006         150 RCDI-----------RLIDFGSATF  163 (351)
Q Consensus       150 ~~ni-----------~l~Dfg~s~~  163 (351)
                      .+|+           .++|||+|..
T Consensus       141 TSNill~~~~~~~~~~lIdfgls~~  165 (229)
T KOG3087|consen  141 TSNILLRSDGNQITPILIDFGLSSV  165 (229)
T ss_pred             ccceEEecCCCcCceEEEeecchhc
Confidence            8885           6899999855

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.79  E-value=8.1e-08  Score=80.36  Aligned_cols=124  Identities=21%  Similarity=0.118  Sum_probs=86.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---------hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---------EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---------~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      +..|++|+=+.++.+.  .-|..+.+|.=...         .-..++..+|++++.++....      |....-++.+.+
T Consensus         1 ~~~i~~GAEa~i~~~~--~~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~G------V~~P~v~dvD~~   72 (204)
T COG3642           1 MDLIKQGAEAIIYLTD--FLGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAG------VPVPIVYDVDPD   72 (204)
T ss_pred             CchhhCCcceeEEeee--ccCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcC------CCCCeEEEEcCC
Confidence            3568899999999995  45666666664321         123356678999999987555      444444555666


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      ...|+|||+ |..|.+.+....     .+..+    .+-.-                       +.-||..|++|+|+.+
T Consensus        73 ~~~I~me~I~G~~lkd~l~~~~-----~~~~r----~vG~~-----------------------vg~lH~~givHGDLTt  120 (204)
T COG3642          73 NGLIVMEYIEGELLKDALEEAR-----PDLLR----EVGRL-----------------------VGKLHKAGIVHGDLTT  120 (204)
T ss_pred             CCEEEEEEeCChhHHHHHHhcc-----hHHHH----HHHHH-----------------------HHHHHhcCeecCCCcc
Confidence            788999999 667777877651     22222    22222                       6778999999999998


Q ss_pred             CC-------eEEeecCCcccC
Q psy2006         151 CD-------IRLIDFGSATFD  164 (351)
Q Consensus       151 ~n-------i~l~Dfg~s~~~  164 (351)
                      +|       +.++|||++...
T Consensus       121 sNiIl~~~~i~~IDfGLg~~s  141 (204)
T COG3642         121 SNIILSGGRIYFIDFGLGEFS  141 (204)
T ss_pred             ceEEEeCCcEEEEECCccccc
Confidence            77       588999998653

>KOG0667|consensus

Probab=98.73  E-value=2.6e-08  Score=96.74  Aligned_cols=44  Identities=34%  Similarity=0.652  Sum_probs=39.1

Q ss_pred             ccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCcccc
Q psy2006         141 KKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYM  184 (351)
Q Consensus       141 ~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~  184 (351)
                      .+|+.-+-+...||++|||.|+...+...+++.+..|+|||++.
T Consensus       318 ENILL~~~~r~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEVIL  361 (586)
T KOG0667|consen  318 ENILLKDPKRSRIKVIDFGSSCFESQRVYTYIQSRFYRAPEVIL  361 (586)
T ss_pred             hheeeccCCcCceeEEecccccccCCcceeeeeccccccchhhc
Confidence            46777777888999999999999999999999999999999654

>KOG0659|consensus

Probab=98.69  E-value=1.3e-08  Score=89.09  Aligned_cols=78  Identities=41%  Similarity=0.680  Sum_probs=61.1

Q ss_pred             CCCeEEeecCCcccCCCCcc---cccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHS---TIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~---~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .+-+||.|||+|+....+..   ...-|.||++||.+++.                                        
T Consensus       137 ~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Yg~~VDmWavGCI~AELllr~P~fpG~sDidQL~~If~  216 (318)
T KOG0659|consen  137 DGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQYGTGVDMWAVGCIFAELLLRVPFFPGDSDIDQLSKIFR  216 (318)
T ss_pred             CCcEEeecccchhccCCCCcccccceeeeeccChHHhccchhcCCcchhhhHHHHHHHHHccCCCCCCCchHHHHHHHHH
Confidence            56689999999987443332   23689999999955432                                        


Q ss_pred             ---------------------------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         187 ---------------------------------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       187 ---------------------------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                                                       .+..++++.||+.+|+.++|.+|.|++++|.|+||...|..
T Consensus       217 ~LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~P~p  290 (318)
T KOG0659|consen  217 ALGTPTPDQWPEMTSLPDYVKIQQFPKPPLNNLFPAASSDALDLLSKMLTYNPKKRITASQALKHPYFKSLPLP  290 (318)
T ss_pred             HcCCCCcccCccccccccHHHHhcCCCCccccccccccHHHHHHHHhhhccCchhcccHHHHhcchhhhcCCCC
Confidence                                             11234677899999999999999999999999999876654

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.68  E-value=1.1e-07  Score=83.08  Aligned_cols=103  Identities=16%  Similarity=0.042  Sum_probs=74.0

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhh--hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC---CeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK--YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH---GHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~--~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~---~~~~l   75 (351)
                      ++.||.|.++.||++... +|+.+++|+......  .......|.++++.+.+.+..    +.+++.+....   +..++
T Consensus         3 ~~~l~~G~~n~~~~v~~~-~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~----vp~~~~~~~~~~~~~~~~~   77 (223)
T cd05154           3 VRQLSGGQSNLTYLLTAG-GGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVP----VPKVLALCEDPSVLGTPFY   77 (223)
T ss_pred             ceecCCCccceEEEEEec-CCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCC----CCCEEEECCCCCccCCceE
Confidence            367999999999999863 358899999875432  345678899999999764422    66677766654   36799


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHh
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYA  111 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~  111 (351)
                      ||||+ |.++.+.+..   ..+++.....++.++...
T Consensus        78 v~e~i~G~~l~~~~~~---~~~~~~~~~~i~~~i~~~  111 (223)
T cd05154          78 VMERVDGRVLRDRLLR---PELSPEERRALARALADT  111 (223)
T ss_pred             EEEEeCCEecCCCCCC---CCCCHHHHHHHHHHHHHH
Confidence            99999 7777765432   135666666777777666

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG0596|consensus

Probab=98.64  E-value=3.9e-08  Score=93.86  Aligned_cols=99  Identities=27%  Similarity=0.443  Sum_probs=70.5

Q ss_pred             HHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcc-----cccCCCCccCCcc
Q psy2006         108 LIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHS-----TIVSTRHYRAPER  182 (351)
Q Consensus       108 l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~-----~~~~~~~~~~pe~  182 (351)
                      +-.-|+.++.|-+...+           .||--+|+         +||+|||+|.......+     .-+||+.|++||+
T Consensus       473 V~~IH~~gIVHSDLKPA-----------NFLlVkG~---------LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEA  532 (677)
T KOG0596|consen  473 VKTIHQHGIVHSDLKPA-----------NFLLVKGR---------LKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEA  532 (677)
T ss_pred             HHHHHHhceeecCCCcc-----------cEEEEeee---------EEeeeechhcccCccccceeeccccCcccccCHHH
Confidence            33446777776665555           33333333         79999999987544433     3589999999996


Q ss_pred             ccCCC---------------------------------------------------------h--hhHHHHHHHHHHhhc
Q psy2006         183 YMASD---------------------------------------------------------D--EEHRQLFDLISKMLE  203 (351)
Q Consensus       183 ~~~~~---------------------------------------------------------~--~~~~~~~~~i~~~L~  203 (351)
                      +....                                                         +  ....++++++..||.
T Consensus       533 l~~~~s~~~~~~~k~Ki~r~SDvWSLGCILYqMvYgktPf~~~~n~~aKl~aI~~P~~~Iefp~~~~~~~li~~mK~CL~  612 (677)
T KOG0596|consen  533 LTDMSSSRENGKSKIKISRKSDVWSLGCILYQMVYGKTPFGQIINQIAKLHAITDPNHEIEFPDIPENDELIDVMKCCLA  612 (677)
T ss_pred             HhhccccccCCCcceeecCccchhhhhhHHHHHHhcCCchHHHHHHHHHHHhhcCCCccccccCCCCchHHHHHHHHHHh
Confidence            64220                                                         0  011348899999999


Q ss_pred             cCCCCCCChhhhhcCCCCCCCCc
Q psy2006         204 YEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       204 ~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      +||.+|+|+.++|+|||++..+-
T Consensus       613 rdPkkR~si~eLLqhpFl~~~~i  635 (677)
T KOG0596|consen  613 RDPKKRWSIPELLQHPFLQIQPI  635 (677)
T ss_pred             cCcccCCCcHHHhcCcccccccc
Confidence            99999999999999999987553

>KOG0593|consensus

Probab=98.63  E-value=1.5e-08  Score=90.10  Aligned_cols=108  Identities=26%  Similarity=0.452  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC---CCCcccccCCCCc
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHY  177 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~  177 (351)
                      ...++..+-..+.++..|.+...-..+                   --+.+-++|+|||+|+-.   ....+++..|.||
T Consensus       107 l~Q~l~ai~~cHk~n~IHRDIKPENIL-------------------it~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWY  167 (396)
T KOG0593|consen  107 LYQLLKAIHFCHKNNCIHRDIKPENIL-------------------ITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWY  167 (396)
T ss_pred             HHHHHHHhhhhhhcCeecccCChhheE-------------------EecCCcEEeccchhhHhhcCCcchhhhhhhhhhc
Confidence            456667777776666655543322111                   112345899999999863   3346678999999


Q ss_pred             cCCccccCC-----------------------------------------------------------------------
Q psy2006         178 RAPERYMAS-----------------------------------------------------------------------  186 (351)
Q Consensus       178 ~~pe~~~~~-----------------------------------------------------------------------  186 (351)
                      ++||.+.++                                                                       
T Consensus       168 RaPELLvGDtqYG~pVDiWAiGCv~aEl~~G~pL~PG~SDiDQLy~I~ktLG~L~prhq~iF~~N~~F~Gv~lP~~~~~e  247 (396)
T KOG0593|consen  168 RAPELLVGDTQYGKPVDIWAIGCVFAELLTGEPLWPGRSDIDQLYLIRKTLGNLIPRHQSIFSSNPFFHGVRLPEPEHPE  247 (396)
T ss_pred             cChhhhcccCcCCCcccchhhhHHHHHHhcCCcCCCCcchHHHHHHHHHHHcccCHHHHHHhccCCceeeeecCCCCCcc
Confidence            999955432                                                                       


Q ss_pred             -----ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         187 -----DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       187 -----~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                           .+..+.-+.||+.+||.+||++|++-+++|.|++|......
T Consensus       248 pLe~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd~~~er  293 (396)
T KOG0593|consen  248 PLERKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFDGFIER  293 (396)
T ss_pred             chhhhcccchHHHHHHHHHHhcCCccccccHHHHhcChHHHHHHHH
Confidence                 01122457799999999999999999999999999654443

>KOG0583|consensus

Probab=98.62  E-value=3.6e-08  Score=93.34  Aligned_cols=78  Identities=33%  Similarity=0.470  Sum_probs=63.9

Q ss_pred             cccCCCCeEEeecCCcccC---CCCcccccCCCCccCCccccCC------------------------------------
Q psy2006         146 RRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMAS------------------------------------  186 (351)
Q Consensus       146 ~d~k~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~------------------------------------  186 (351)
                      +|...+|+||+|||+|...   +....+.+||+.|++||.+...                                    
T Consensus       153 ld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~~~~l~  232 (370)
T KOG0583|consen  153 LDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGKGTYSGKAADVWSLGVILYVLLCGRLPFDDSNVPNLY  232 (370)
T ss_pred             ecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCCCCcCCchhhhhhhHHHHHHHHhCCCCCCCccHHHHH
Confidence            3333388999999999865   4557779999999999965432                                    


Q ss_pred             ----------Chhh-HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         187 ----------DDEE-HRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       187 ----------~~~~-~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                                +... +.++.+++.+||..+|.+|+|+.+++.||||+.
T Consensus       233 ~ki~~~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  233 RKIRKGEFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             HHHhcCCccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence                      1223 788899999999999999999999999999986

>KOG0663|consensus

Probab=98.61  E-value=2.9e-08  Score=89.49  Aligned_cols=78  Identities=32%  Similarity=0.562  Sum_probs=62.6

Q ss_pred             CCCeEEeecCCcccCCCC---cccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~---~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      .+-++++|||+|+....+   .+...-|.||++||.+.+..                                       
T Consensus       213 ~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~tyst~iDMWSvGCI~aE~l~~kPlf~G~sE~dQl~~If~  292 (419)
T KOG0663|consen  213 KGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTYSTAVDMWSVGCIFAELLTQKPLFPGKSEIDQLDKIFK  292 (419)
T ss_pred             CCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCcccCcchhhhhHHHHHHHHHhcCCCCCCCchHHHHHHHHH
Confidence            355899999999986555   66778899999999544320                                       


Q ss_pred             --------------------------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         188 --------------------------------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 --------------------------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                                                            ...+++..+|+..+|.+||.+|.||+++|.|+||...|.+
T Consensus       293 llGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~lse~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e~P~p  370 (419)
T KOG0663|consen  293 LLGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALSLSEQGFDLLNKLLTYDPGKRITAEDGLKHEYFRETPLP  370 (419)
T ss_pred             HhCCCccccCCCccccchhhccccCCCCchhhhhhccccccchhHHHHHHHHhccCccccccHHHhhcccccccCCCC
Confidence                                                  0134678899999999999999999999999999886644

>KOG0198|consensus

Probab=98.60  E-value=6.4e-08  Score=88.76  Aligned_cols=108  Identities=22%  Similarity=0.351  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCC------CcccccC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE------HHSTIVS  173 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~------~~~~~~~  173 (351)
                      .++.+...+..-|.+++.|.+......+                  .+...+.+||.|||.++..+.      ......|
T Consensus       122 ytr~iL~GL~ylHs~g~vH~DiK~~NiL------------------l~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~G  183 (313)
T KOG0198|consen  122 YTRQILEGLAYLHSKGIVHCDIKPANIL------------------LDPSNGDVKLADFGLAKKLESKGTKSDSELSVQG  183 (313)
T ss_pred             HHHHHHHHHHHHHhCCEeccCcccceEE------------------EeCCCCeEEeccCccccccccccccccccccccC
Confidence            3677788888776555555443322111                  111146799999999976442      1334789


Q ss_pred             CCCccCCcccc-CC-----------------------------------------------ChhhHHHHHHHHHHhhccC
Q psy2006         174 TRHYRAPERYM-AS-----------------------------------------------DDEEHRQLFDLISKMLEYE  205 (351)
Q Consensus       174 ~~~~~~pe~~~-~~-----------------------------------------------~~~~~~~~~~~i~~~L~~~  205 (351)
                      |+.|++||.+. +.                                               +...++++.+|+.+|+.++
T Consensus       184 tp~~maPEvi~~g~~~~~~sDiWSlGCtVvEM~Tg~~PW~~~~~~~~~~~~ig~~~~~P~ip~~ls~~a~~Fl~~C~~~~  263 (313)
T KOG0198|consen  184 TPNYMAPEVIRNGEVARRESDIWSLGCTVVEMLTGKPPWSEFFEEAEALLLIGREDSLPEIPDSLSDEAKDFLRKCFKRD  263 (313)
T ss_pred             CccccCchhhcCCCcCCccchhhhcCCEEEeccCCCCcchhhcchHHHHHHHhccCCCCCCCcccCHHHHHHHHHHhhcC
Confidence            99999999776 21                                               0112347889999999999


Q ss_pred             CCCCCChhhhhcCCCCCCCC
Q psy2006         206 PSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       206 p~~R~t~~e~l~~~~~~~~~  225 (351)
                      |.+||||+++|.|||.....
T Consensus       264 p~~Rpta~eLL~hpf~~~~~  283 (313)
T KOG0198|consen  264 PEKRPTAEELLEHPFLKQNS  283 (313)
T ss_pred             cccCcCHHHHhhChhhhccc
Confidence            99999999999999986533

>KOG0600|consensus

Probab=98.59  E-value=6.7e-08  Score=91.37  Aligned_cols=106  Identities=24%  Similarity=0.389  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC----CCCcccccCCCC
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD----DEHHSTIVSTRH  176 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~----~~~~~~~~~~~~  176 (351)
                      -+.++..+...|.++++|.+....                   ...--..++++|.|||+|+..    ....+...-|.|
T Consensus       224 mkQLl~Gl~~cH~~gvlHRDIK~S-------------------NiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLW  284 (560)
T KOG0600|consen  224 MKQLLEGLEYCHSRGVLHRDIKGS-------------------NILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLW  284 (560)
T ss_pred             HHHHHHHHHHHhhcCeeecccccc-------------------ceEEcCCCCEEeccccceeeccCCCCcccccceEEee
Confidence            355677777776666655553322                   222223577999999999852    334666788999


Q ss_pred             ccCCccccCCC---------------------------------------------------------------------
Q psy2006         177 YRAPERYMASD---------------------------------------------------------------------  187 (351)
Q Consensus       177 ~~~pe~~~~~~---------------------------------------------------------------------  187 (351)
                      |++||.+++..                                                                     
T Consensus       285 YRpPELLLG~t~Yg~aVDlWS~GCIl~El~~gkPI~~G~tEveQl~kIfklcGSP~e~~W~~~kLP~~~~~kp~~~y~r~  364 (560)
T KOG0600|consen  285 YRPPELLLGATSYGTAVDLWSVGCILAELFLGKPILQGRTEVEQLHKIFKLCGSPTEDYWPVSKLPHATIFKPQQPYKRR  364 (560)
T ss_pred             ccChHHhcCCcccccceeehhhhHHHHHHHcCCCCcCCccHHHHHHHHHHHhCCCChhccccccCCcccccCCCCcccch
Confidence            99999655430                                                                     


Q ss_pred             -----hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 -----DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 -----~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                           .......++|+..||+.||++|.||.++|+++||...+
T Consensus       365 l~E~~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t~p  407 (560)
T KOG0600|consen  365 LRETFKDFPASALDLLEKLLSLDPDKRGTASSALQSEYFTTEP  407 (560)
T ss_pred             HHHHhccCCHHHHHHHHHHhccCccccccHHHHhcCcccccCC
Confidence                 01114466899999999999999999999999995433

>KOG0616|consensus

Probab=98.58  E-value=2.9e-08  Score=88.07  Aligned_cols=81  Identities=23%  Similarity=0.349  Sum_probs=67.4

Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCC-----------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD-----------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~-----------------------------------------  187 (351)
                      +.+.++++|||+|+...+...+.||||.|+|||.+...+                                         
T Consensus       179 ~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ynkavDWWalGVLIYEMlaG~pPF~~~~~~~iY~KI~~~~v  258 (355)
T KOG0616|consen  179 QNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNKAVDWWALGVLIYEMLAGYPPFYDDNPIQIYEKILEGKV  258 (355)
T ss_pred             cCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCCCCcchhHHHHHHHHHHHHcCCCCCcCCChHHHHHHHHhCcc
Confidence            578899999999999888888999999999999765431                                         


Q ss_pred             ---hhhHHHHHHHHHHhhccCCCCCC-----ChhhhhcCCCCCCCCchhh
Q psy2006         188 ---DEEHRQLFDLISKMLEYEPSERI-----SLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       188 ---~~~~~~~~~~i~~~L~~~p~~R~-----t~~e~l~~~~~~~~~~~~~  229 (351)
                         .--+.++.+++.++|..|-.+|.     ...++.+||||+...|..-
T Consensus       259 ~fP~~fs~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v~W~~i  308 (355)
T KOG0616|consen  259 KFPSYFSSDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGVDWEAI  308 (355)
T ss_pred             cCCcccCHHHHHHHHHHHhhhhHhhhcCcCCCccccccCcccccccHHHH
Confidence               22346788999999999999992     3678999999999888644

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.57  E-value=3.1e-07  Score=78.46  Aligned_cols=122  Identities=20%  Similarity=0.244  Sum_probs=72.6

Q ss_pred             eEEEEEEeecCcEEEEEEecchh--------------h-------------hhHHHHHHHHHHHHhCCCCCCCCcceeee
Q psy2006          11 HVCTNVVYEVDSVVALKIIKNVE--------------K-------------YREAARLEINALQKIGEKDPNGRHLCVKM   63 (351)
Q Consensus        11 ~V~~~~~~~~~~~vAiK~~~~~~--------------~-------------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l   63 (351)
                      .||.|.. ..+..+|+|+.+...              .             ....+.+|.+.|.++...+-+    |..+
T Consensus         1 ~Vy~~~~-~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~----vP~p   75 (188)
T PF01163_consen    1 DVYHAID-PDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVP----VPKP   75 (188)
T ss_dssp             EEEEEEE-CTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-S----S--E
T ss_pred             CEEEEEC-CCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCcc----CCcE
Confidence            4899996 578899999996421              0             113457899999999765433    7777


Q ss_pred             eeeEeeCCeEEEEEeccC--CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc
Q psy2006          64 LDWFDYHGHMCIAFEILG--LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK  141 (351)
Q Consensus        64 ~~~f~~~~~~~lV~E~~g--~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  141 (351)
                      +++-    ..+|||||++  |.....+....   +.......++.+++..                      -...+|..
T Consensus        76 ~~~~----~~~ivME~I~~~G~~~~~l~~~~---~~~~~~~~~~~~il~~----------------------~~~~~~~~  126 (188)
T PF01163_consen   76 YDYN----RNVIVMEYIGEDGVPLPRLKDVD---LSPEEPKELLEEILEE----------------------IIKMLHKA  126 (188)
T ss_dssp             EEEE----TTEEEEE--EETTEEGGCHHHCG---GGGSTHHHHHHHHHHH----------------------HHHHHHCT
T ss_pred             EEEe----CCEEEEEecCCCccchhhHHhcc---ccchhHHHHHHHHHHH----------------------HHHHHHhc
Confidence            7553    3479999997  64333343332   1233445555555543                      03345899


Q ss_pred             cccccccCCCC-------eEEeecCCcccCCC
Q psy2006         142 KREVRRVRRCD-------IRLIDFGSATFDDE  166 (351)
Q Consensus       142 ~i~h~d~k~~n-------i~l~Dfg~s~~~~~  166 (351)
                      |++|+|+.+.|       +.++|||.|.....
T Consensus       127 givHGDLs~~NIlv~~~~~~iIDf~qav~~~~  158 (188)
T PF01163_consen  127 GIVHGDLSEYNILVDDGKVYIIDFGQAVDSSH  158 (188)
T ss_dssp             TEEESS-STTSEEEETTCEEE--GTTEEETTS
T ss_pred             CceecCCChhhEEeecceEEEEecCcceecCC
Confidence            99999999777       47888988866443

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG0032|consensus

Probab=98.57  E-value=1.5e-07  Score=89.25  Aligned_cols=74  Identities=38%  Similarity=0.610  Sum_probs=60.9

Q ss_pred             CCeEEeecCCcccCCC--CcccccCCCCccCCccccCC------------------------------------------
Q psy2006         151 CDIRLIDFGSATFDDE--HHSTIVSTRHYRAPERYMAS------------------------------------------  186 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~--~~~~~~~~~~~~~pe~~~~~------------------------------------------  186 (351)
                      +.++++|||+|.....  .....+||+.|+|||.+...                                          
T Consensus       176 ~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y~~~~DiWS~Gvi~yiLL~G~~PF~~~~~~~~~~~i~~~~~  255 (382)
T KOG0032|consen  176 GRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPYGDEVDVWSIGVILYILLSGVPPFWGETEFEIFLAILRGDF  255 (382)
T ss_pred             CcEEEeeCCCceEccCCceEeeecCCccccCchhhcCCCCCcccchhHHHHHHHHHhhCCCCCcCCChhHHHHHHHcCCC
Confidence            4699999999987544  46678999999999966521                                          


Q ss_pred             ------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         187 ------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       187 ------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                            -+..++.+.+||.+||..||..|+|+.++|+|||+...
T Consensus       256 ~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~~~  299 (382)
T KOG0032|consen  256 DFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQHPWIKSI  299 (382)
T ss_pred             CCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcCccccCC
Confidence                  01234678899999999999999999999999998765

>KOG0579|consensus

Probab=98.56  E-value=6.7e-08  Score=93.65  Aligned_cols=78  Identities=29%  Similarity=0.509  Sum_probs=62.4

Q ss_pred             CCCeEEeecCCccc---CCCCcccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~---~~~~~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      .|.|+|.|||+|..   .-+....++|||.|++||+++...                                       
T Consensus       166 dGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiEPPHhelnpMRVll  245 (1187)
T KOG0579|consen  166 DGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL  245 (1187)
T ss_pred             cCcEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccCCCccccchHHHHH
Confidence            46799999999954   344466799999999999765320                                       


Q ss_pred             -------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         188 -------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 -------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                                   .-=+..+.||+.+||.++|..||++.++|.|||++..++.
T Consensus       246 KiaKSePPTLlqPS~Ws~~F~DfLk~cL~Knp~~Rp~aaqll~Hpfv~~~~Sn  298 (1187)
T KOG0579|consen  246 KIAKSEPPTLLQPSHWSRSFSDFLKRCLVKNPRNRPPAAQLLKHPFVQNAPSN  298 (1187)
T ss_pred             HHhhcCCCcccCcchhhhHHHHHHHHHHhcCCccCCCHHHHhhCcccccCCcc
Confidence                         0113457799999999999999999999999999987764

>KOG0201|consensus

Probab=98.53  E-value=4e-08  Score=91.40  Aligned_cols=76  Identities=29%  Similarity=0.409  Sum_probs=61.3

Q ss_pred             CCCeEEeecCCcccCC---CCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~---~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|.|||++.+..   ....++.|||.|||||++...                                        
T Consensus       147 ~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~KADIWSLGITaiEla~GePP~s~~hPmrvlflIpk~  226 (467)
T KOG0201|consen  147 SGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTKADIWSLGITAIELAKGEPPHSKLHPMRVLFLIPKS  226 (467)
T ss_pred             cCcEEEEecceeeeeechhhccccccccccccchhhhccccccchhhhhhhhHHHHHHhcCCCCCcccCcceEEEeccCC
Confidence            3789999999997632   223678999999999977642                                        


Q ss_pred             -----ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         187 -----DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       187 -----~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                           .+.-+..+.+|+..||.++|..||+|.++|.|+|++...
T Consensus       227 ~PP~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh~FIk~a~  270 (467)
T KOG0201|consen  227 APPRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLKHKFIKRAK  270 (467)
T ss_pred             CCCccccccCHHHHHHHHHHhhcCcccCcCHHHHhhhHHHHhcC
Confidence                 123346688999999999999999999999999998744

>KOG0594|consensus

Probab=98.51  E-value=1.3e-07  Score=85.89  Aligned_cols=108  Identities=30%  Similarity=0.462  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC---CCcccccCCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRH  176 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~---~~~~~~~~~~~  176 (351)
                      ..+.+...+...|.++++|.+              |.-   ++++.-+  .+.+||+|||+|+...   ...+..+.|.+
T Consensus       125 ~m~Qll~gl~~~H~~~IlHRD--------------LKP---QNlLi~~--~G~lKlaDFGlAra~~ip~~~yt~evvTlW  185 (323)
T KOG0594|consen  125 FMRQLLRGLAFLHSHGILHRD--------------LKP---QNLLISS--SGVLKLADFGLARAFSIPMRTYTPEVVTLW  185 (323)
T ss_pred             HHHHHHHHHHHHHhCCeeccc--------------CCc---ceEEECC--CCcEeeeccchHHHhcCCcccccccEEEee
Confidence            357788889888888887776              321   3333332  6789999999997633   33556789999


Q ss_pred             ccCCccccCCC---------------------------------------------------------------------
Q psy2006         177 YRAPERYMASD---------------------------------------------------------------------  187 (351)
Q Consensus       177 ~~~pe~~~~~~---------------------------------------------------------------------  187 (351)
                      |++||.+.+..                                                                     
T Consensus       186 YRaPEvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~se~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~~~  265 (323)
T KOG0594|consen  186 YRAPEVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDSEIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPGPK  265 (323)
T ss_pred             ccCHHHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCCcc
Confidence            99999655330                                                                     


Q ss_pred             ------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         188 ------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       188 ------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                            +....+..+++.+||.++|.+|.|+..+|.||||...+.
T Consensus       266 ~l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~  310 (323)
T KOG0594|consen  266 DLSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELPE  310 (323)
T ss_pred             chHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhccccc
Confidence                  011146779999999999999999999999999988753

>KOG1290|consensus

Probab=98.51  E-value=1.2e-07  Score=89.42  Aligned_cols=75  Identities=32%  Similarity=0.707  Sum_probs=64.3

Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCC----------------------------------------------
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS----------------------------------------------  186 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~----------------------------------------------  186 (351)
                      +||.|||=|+-...+.+..+.|.+|++||++.+.                                              
T Consensus       393 vKIaDlGNACW~~khFT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i~EL  472 (590)
T KOG1290|consen  393 VKIADLGNACWVHKHFTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGENYSRDEDHIALIMEL  472 (590)
T ss_pred             EEEeeccchhhhhhhhchhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCccHHHHHHHHHH
Confidence            7999999999888888999999999999976543                                              


Q ss_pred             ----------------------------------------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCC
Q psy2006         187 ----------------------------------------------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPF  220 (351)
Q Consensus       187 ----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~  220 (351)
                                                                    ..++..++.+|+.-||.++|++|+||.++|+|||
T Consensus       473 LG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~hPw  552 (590)
T KOG1290|consen  473 LGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLKHPW  552 (590)
T ss_pred             HhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHHHHhcCcc
Confidence                                                          1234456779999999999999999999999999


Q ss_pred             CCCCCch
Q psy2006         221 FDKLPSS  227 (351)
Q Consensus       221 ~~~~~~~  227 (351)
                      ++..+..
T Consensus       553 Ln~~~~~  559 (590)
T KOG1290|consen  553 LNPVAGP  559 (590)
T ss_pred             ccCCCCC
Confidence            9876643

>KOG0658|consensus

Probab=98.51  E-value=7.1e-08  Score=87.87  Aligned_cols=79  Identities=39%  Similarity=0.645  Sum_probs=63.4

Q ss_pred             CCCCeEEeecCCccc--CCCCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         149 RRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~--~~~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      ..+-+||+|||-|+.  .+++...+..|..|+|||.+++.                                        
T Consensus       161 ~tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELifga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s~~dQL~eIik  240 (364)
T KOG0658|consen  161 DTGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVMAELLKGQPLFPGDSSVDQLVEIIK  240 (364)
T ss_pred             CCCeEEeccCCcceeeccCCCceeEEEeccccCHHHHcCccccCceeEEhhhhHHHHHHhcCCcccCCCCHHHHHHHHHH
Confidence            345689999999976  45556678899999999965532                                        


Q ss_pred             ----------------------------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         187 ----------------------------------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       187 ----------------------------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                                                        .....+++.+|+.++|.++|++|.++.++|.||+|+.+...
T Consensus       241 ~lG~Pt~e~I~~mn~~y~~~~~p~ik~~~~~~~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr~~  315 (364)
T KOG0658|consen  241 VLGTPTREDIKSMNPNYTEFKFPQIKAHPWHKVFFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELRDP  315 (364)
T ss_pred             HhCCCCHHHHhhcCcccccccCcccccccceeecccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhhCc
Confidence                                              01123678899999999999999999999999999887755

>KOG0604|consensus

Probab=98.49  E-value=1.4e-07  Score=83.95  Aligned_cols=81  Identities=28%  Similarity=0.405  Sum_probs=64.0

Q ss_pred             CCCCeEEeecCCcccCC--CCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .+.-+||+|||+|+...  ....+-+-||.|.+||.+...                                        
T Consensus       199 ~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~aispgMk~r  278 (400)
T KOG0604|consen  199 PNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKRR  278 (400)
T ss_pred             CCcceEecccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccCChhHHhH
Confidence            34558999999998755  445667889999999954321                                        


Q ss_pred             --------C----hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         187 --------D----DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       187 --------~----~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                              +    ..-+++++++|+.+|+.+|.+|.|+.+++.|||.++...-..
T Consensus       279 I~~gqy~FP~pEWs~VSe~aKdlIR~LLkt~PteRlTI~~~m~hpwi~~~~~vp~  333 (400)
T KOG0604|consen  279 IRTGQYEFPEPEWSCVSEAAKDLIRKLLKTEPTERLTIEEVMDHPWINQYEAVPQ  333 (400)
T ss_pred             hhccCccCCChhHhHHHHHHHHHHHHHhcCCchhheeHHHhhcCchhcccccCCC
Confidence                    0    134688999999999999999999999999999987555433

>KOG0598|consensus

Probab=98.46  E-value=1.1e-07  Score=86.63  Aligned_cols=82  Identities=29%  Similarity=0.469  Sum_probs=65.0

Q ss_pred             CCCeEEeecCCccc---CCCCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~---~~~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||+|+.   ......++|||+.|+|||.+...                                        
T Consensus       161 ~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~~vDWWsLGillYeML~G~pPF~~~~~~~~~~~I~~~  240 (357)
T KOG0598|consen  161 QGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDKAVDWWSLGILLYEMLTGKPPFYAEDVKKMYDKILKG  240 (357)
T ss_pred             CCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCcccchHhHHHHHHHHhhCCCCCcCccHHHHHHHHhcC
Confidence            56799999999985   23345668999999999965432                                        


Q ss_pred             -----ChhhHHHHHHHHHHhhccCCCCCC----ChhhhhcCCCCCCCCchhhhc
Q psy2006         187 -----DDEEHRQLFDLISKMLEYEPSERI----SLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       187 -----~~~~~~~~~~~i~~~L~~~p~~R~----t~~e~l~~~~~~~~~~~~~~~  231 (351)
                           +.-.+.++.+++.++|..||.+|.    .+.++.+||||....|..-..
T Consensus       241 k~~~~p~~ls~~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~inW~~l~~  294 (357)
T KOG0598|consen  241 KLPLPPGYLSEEARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKGINWEKLLA  294 (357)
T ss_pred             cCCCCCccCCHHHHHHHHHHhccCHHHhcCCCCChHHhhcCcccccCCHHHHHh
Confidence                 112457788999999999999995    588899999999998865543

>PTZ00284 protein kinase; Provisional

Probab=98.45  E-value=2.2e-07  Score=91.21  Aligned_cols=35  Identities=29%  Similarity=0.491  Sum_probs=30.8

Q ss_pred             HHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         193 QLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       193 ~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      .+.+||.+||.+||.+|+|+.|+|+||||......
T Consensus       413 ~~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~~~~~  447 (467)
T PTZ00284        413 LLCDLIYGLLHYDRQKRLNARQMTTHPYVLKYYPE  447 (467)
T ss_pred             HHHHHHHHhCCcChhhCCCHHHHhcCccccccCCc
Confidence            35689999999999999999999999999875543

>KOG0690|consensus

Probab=98.45  E-value=1.2e-07  Score=85.24  Aligned_cols=81  Identities=25%  Similarity=0.416  Sum_probs=66.2

Q ss_pred             CCCCeEEeecCCcccC---CCCcccccCCCCccCCccccCC---------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMAS---------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~---------------------------------------  186 (351)
                      |+++|++.|||+++.+   .....++||||.|++||.+-..                                       
T Consensus       303 kDGHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh~kLFeLIl~  382 (516)
T KOG0690|consen  303 KDGHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDHEKLFELILM  382 (516)
T ss_pred             cCCceEeeecccchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccchhHHHHHHHh
Confidence            6889999999999873   4446779999999999965322                                       


Q ss_pred             -----ChhhHHHHHHHHHHhhccCCCCCCC-----hhhhhcCCCCCCCCchhh
Q psy2006         187 -----DDEEHRQLFDLISKMLEYEPSERIS-----LSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       187 -----~~~~~~~~~~~i~~~L~~~p~~R~t-----~~e~l~~~~~~~~~~~~~  229 (351)
                           +...++++..++..+|.+||.+|..     +.|+++|+||....|...
T Consensus       383 ed~kFPr~ls~eAktLLsGLL~kdP~kRLGgGpdDakEi~~h~FF~~v~W~~~  435 (516)
T KOG0690|consen  383 EDLKFPRTLSPEAKTLLSGLLKKDPKKRLGGGPDDAKEIMRHRFFASVDWEAT  435 (516)
T ss_pred             hhccCCccCCHHHHHHHHHHhhcChHhhcCCCchhHHHHHhhhhhccCCHHHH
Confidence                 2234577889999999999999965     789999999999888654

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=98.45  E-value=4e-06  Score=75.87  Aligned_cols=117  Identities=15%  Similarity=0.027  Sum_probs=82.4

Q ss_pred             eEEEEEEeecCcEEEEEEecchh--h----------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee-----CCeE
Q psy2006          11 HVCTNVVYEVDSVVALKIIKNVE--K----------YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY-----HGHM   73 (351)
Q Consensus        11 ~V~~~~~~~~~~~vAiK~~~~~~--~----------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~-----~~~~   73 (351)
                      .|.++.  ..|+.|.||......  .          ....+.+|.+.+.+|...+-.    +..++.+++.     ....
T Consensus        37 rvvr~~--~~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIp----tP~pVa~~e~~~~~~~~~s  110 (268)
T PRK15123         37 RTLRFE--LAGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVD----TMTGVAFGERGSNPATRTS  110 (268)
T ss_pred             eEEEEE--ECCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCC----CCCeeEEEEecCCCcccee
Confidence            355544  567889999774321  0          011477899999988654433    5666666653     2368


Q ss_pred             EEEEeccCC--CHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          74 CIAFEILGL--SVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        74 ~lV~E~~g~--sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +||+|++++  +|.+++........+......++.++...                       +.-||+.|++|+|++++
T Consensus       111 ~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~-----------------------i~~LH~~Gi~HgDL~~~  167 (268)
T PRK15123        111 FIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATM-----------------------VRDMHAAGINHRDCYIC  167 (268)
T ss_pred             EEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHH-----------------------HHHHHHCcCccCCCChh
Confidence            899999944  79999865432344556666777777777                       99999999999999999


Q ss_pred             CeEEe
Q psy2006         152 DIRLI  156 (351)
Q Consensus       152 ni~l~  156 (351)
                      |+.+.
T Consensus       168 NiLl~  172 (268)
T PRK15123        168 HFLLH  172 (268)
T ss_pred             hEEEe
Confidence            99886

>KOG0694|consensus

Probab=98.43  E-value=2.1e-07  Score=91.08  Aligned_cols=81  Identities=21%  Similarity=0.425  Sum_probs=64.7

Q ss_pred             CCCCeEEeecCCcccC---CCCcccccCCCCccCCccccCC----------------------------Ch---------
Q psy2006         149 RRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMAS----------------------------DD---------  188 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~----------------------------~~---------  188 (351)
                      ..|.+||.|||+++..   ....+++||||.|++||.+...                            ++         
T Consensus       503 ~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDWW~lGVLlyeML~Gq~PF~gddEee~FdsI~~  582 (694)
T KOG0694|consen  503 TEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDWWGLGVLLYEMLVGESPFPGDDEEEVFDSIVN  582 (694)
T ss_pred             ccCcEEecccccccccCCCCCccccccCChhhcChhhhccCcccchhhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHhc
Confidence            4688999999999983   3346779999999999965432                            11         


Q ss_pred             -------hhHHHHHHHHHHhhccCCCCCCC-----hhhhhcCCCCCCCCchhh
Q psy2006         189 -------EEHRQLFDLISKMLEYEPSERIS-----LSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       189 -------~~~~~~~~~i~~~L~~~p~~R~t-----~~e~l~~~~~~~~~~~~~  229 (351)
                             ..+.++.++++++|..+|.+|..     ++++..||||..+.|..-
T Consensus       583 d~~~yP~~ls~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i~w~~L  635 (694)
T KOG0694|consen  583 DEVRYPRFLSKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSIDWDDL  635 (694)
T ss_pred             CCCCCCCcccHHHHHHHHHHhccCcccccCCCCCCchhhhhCCccccCCHHHH
Confidence                   12356789999999999999976     478999999999988655

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=98.41  E-value=4.7e-07  Score=84.36  Aligned_cols=110  Identities=19%  Similarity=0.257  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC---CCCcccccCCCCc
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHY  177 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~  177 (351)
                      +..++..|..-|.+++.|.+...-.                 |+..  ..+.++|+|||+++..   ........||+.|
T Consensus       101 ~~qi~~~L~~lH~~~ivHrDlkp~N-----------------Ill~--~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y  161 (323)
T cd05571         101 GAEIVSALGYLHSCDVVYRDLKLEN-----------------LMLD--KDGHIKITDFGLCKEGISDGATMKTFCGTPEY  161 (323)
T ss_pred             HHHHHHHHHHHHhCCeEeCCCCHHH-----------------EEEC--CCCCEEEeeCCCCcccccCCCcccceecCccc
Confidence            4556666666655555544433222                 2221  2456999999999753   2223446799999


Q ss_pred             cCCccccCC--------------------------------------------ChhhHHHHHHHHHHhhccCCCCCC---
Q psy2006         178 RAPERYMAS--------------------------------------------DDEEHRQLFDLISKMLEYEPSERI---  210 (351)
Q Consensus       178 ~~pe~~~~~--------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~---  210 (351)
                      ++||.+...                                            ....++++.++|.+||..||.+|+   
T Consensus       162 ~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~  241 (323)
T cd05571         162 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGG  241 (323)
T ss_pred             cChhhhcCCCCCccccCcccchhhhhhhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCC
Confidence            999954321                                            011235688999999999999999   


Q ss_pred             --ChhhhhcCCCCCCCCchhh
Q psy2006         211 --SLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       211 --t~~e~l~~~~~~~~~~~~~  229 (351)
                        ++.++++||||....+...
T Consensus       242 ~~~~~~ll~h~~f~~~~~~~~  262 (323)
T cd05571         242 PEDAKEIMEHRFFASINWQDV  262 (323)
T ss_pred             CCCHHHHHcCCCcCCCCHHHH
Confidence              8999999999988766433

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>PTZ00036 glycogen synthase kinase; Provisional

Probab=98.38  E-value=3.6e-07  Score=88.97  Aligned_cols=34  Identities=44%  Similarity=0.796  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +++.+||.+||.+||.+|+|+.++|+||||....
T Consensus       325 ~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~  358 (440)
T PTZ00036        325 DDAINFISQFLKYEPLKRLNPIEALADPFFDDLR  358 (440)
T ss_pred             HHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhh
Confidence            4678999999999999999999999999997654

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=98.36  E-value=9e-07  Score=80.93  Aligned_cols=30  Identities=47%  Similarity=0.738  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                      +++.++|.+||.+||.+|+|++|+|+||||
T Consensus       259 ~~~~dll~~mL~~dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         259 TDGIDLLSSLLLYETKSRISAEAALRHSYF  288 (288)
T ss_pred             HHHHHHHHHhcCcCcccCCCHHHHhcCCCC
Confidence            456789999999999999999999999997

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG4279|consensus

Probab=98.35  E-value=7.4e-07  Score=87.47  Aligned_cols=77  Identities=23%  Similarity=0.351  Sum_probs=62.6

Q ss_pred             CCCeEEeecCCccc---CCCCcccccCCCCccCCccccC-----------------------------------------
Q psy2006         150 RCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPERYMA-----------------------------------------  185 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~---~~~~~~~~~~~~~~~~pe~~~~-----------------------------------------  185 (351)
                      .+-+||+|||.|+.   .+.-..++.||.+|++||.+-.                                         
T Consensus       712 SGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~aADIWS~GCT~vEMATGrPPF~ElgspqAAMFkV  791 (1226)
T KOG4279|consen  712 SGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGKAADIWSFGCTMVEMATGRPPFVELGSPQAAMFKV  791 (1226)
T ss_pred             cceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCchhhhhhccceeEeeccCCCCeeecCChhHhhhhh
Confidence            35589999999976   2344556899999999995421                                         


Q ss_pred             --------CChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         186 --------SDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       186 --------~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                              .+.+.+.++.+||.+|...||+.||+|.++|.+||++.-+.
T Consensus       792 GmyKvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~DpFlq~~~k  840 (1226)
T KOG4279|consen  792 GMYKVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQDPFLQHNNK  840 (1226)
T ss_pred             cceecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccCcccccCCC
Confidence                    13567788999999999999999999999999999987643

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=98.33  E-value=7.1e-07  Score=82.68  Aligned_cols=29  Identities=34%  Similarity=0.815  Sum_probs=27.2

Q ss_pred             HHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         193 QLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       193 ~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                      ++.++|.+||.+||.+|+|++|+|+||||
T Consensus       289 ~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         289 KAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             HHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            36789999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=98.33  E-value=9.4e-07  Score=82.93  Aligned_cols=76  Identities=39%  Similarity=0.663  Sum_probs=59.6

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCC--------------------------h---------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD--------------------------D---------------  188 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~--------------------------~---------------  188 (351)
                      .++++|+|||+++..........+|+.|++||.+....                          .               
T Consensus       154 ~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~  233 (343)
T cd07878         154 DCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLKGKALFPGNDYIDQLKRIMEVVG  233 (343)
T ss_pred             CCCEEEcCCccceecCCCcCCccccccccCchHhcCCccCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHhC
Confidence            46799999999988766667778999999999653210                          0               


Q ss_pred             -----------------------------------hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         189 -----------------------------------EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       189 -----------------------------------~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                                                         ...+.+.++|.+||..||.+|+|+.++|.||||....
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~hp~~~~~~  305 (343)
T cd07878         234 TPSPEVLKKISSEHARKYIQSLPHMPQQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAHPYFSQYH  305 (343)
T ss_pred             CCCHHHHHhcchhhHHHHhhccccccchhHHHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhccC
Confidence                                               0012356899999999999999999999999997644

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>PHA03209 serine/threonine kinase US3; Provisional

Probab=98.31  E-value=1.4e-06  Score=82.39  Aligned_cols=29  Identities=34%  Similarity=0.492  Sum_probs=26.8

Q ss_pred             HHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         195 FDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       195 ~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                      .++|.+||.+||.+|||+.|+|+||||+.
T Consensus       328 ~~li~~mL~~dP~~Rpta~e~l~hp~f~~  356 (357)
T PHA03209        328 EFLVHKMLTFDAAMRPSAEEILNYPMFAQ  356 (357)
T ss_pred             HHHHHHHHcCCcccCcCHHHHhcCchhcc
Confidence            34899999999999999999999999975

>PHA03212 serine/threonine kinase US3; Provisional

Probab=98.31  E-value=1.5e-06  Score=83.41  Aligned_cols=33  Identities=33%  Similarity=0.492  Sum_probs=30.2

Q ss_pred             HHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         193 QLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       193 ~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      ++.++|.+||.+||.+|+|+.|+|+||||+..+
T Consensus       351 ~l~~Li~~mL~~dP~~Rpta~elL~hp~f~~~~  383 (391)
T PHA03212        351 DLEYLICKMLAFDAHHRPSAEALLDFAAFQDIP  383 (391)
T ss_pred             hHHHHHHHHhcCChhhCCCHHHHhcChhhccCC
Confidence            567899999999999999999999999998754

>KOG0592|consensus

Probab=98.31  E-value=5.9e-07  Score=85.81  Aligned_cols=81  Identities=31%  Similarity=0.462  Sum_probs=63.5

Q ss_pred             CCCCeEEeecCCcccCCCC----------------cccccCCCCccCCccccCC--------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEH----------------HSTIVSTRHYRAPERYMAS--------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~----------------~~~~~~~~~~~~pe~~~~~--------------------------  186 (351)
                      +++.++|.|||-|+.....                ...+.||-.|++||.+...                          
T Consensus       209 ~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAeYVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFr  288 (604)
T KOG0592|consen  209 KDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAEYVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFR  288 (604)
T ss_pred             CCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeecccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCc
Confidence            4567999999998752111                1348899999999965432                          


Q ss_pred             ------------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         187 ------------------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       187 ------------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                                        ++.-.+.+.|+|.++|..||.+|+|++++.+||||..+.|..-
T Consensus       289 a~NeyliFqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~~Vdw~nl  349 (604)
T KOG0592|consen  289 AANEYLIFQKIQALDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAHPFFEGVDWENL  349 (604)
T ss_pred             cccHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHccCccccccHHHHhhCcccccCChhhh
Confidence                              1122366889999999999999999999999999999998774

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=98.30  E-value=1.1e-06  Score=80.20  Aligned_cols=103  Identities=29%  Similarity=0.413  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCC--CcccccCCCCc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHY  177 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~--~~~~~~~~~~~  177 (351)
                      .+..++..+..-|++++.|.....-..+                 ..  ..+.++|+|||+++....  ......|++.|
T Consensus       115 i~~qi~~aL~~lH~~~iiH~dlkp~Nil-----------------~~--~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y  175 (290)
T cd07862         115 MMFQLLRGLDFLHSHRVVHRDLKPQNIL-----------------VT--SSGQIKLADFGLARIYSFQMALTSVVVTLWY  175 (290)
T ss_pred             HHHHHHHHHHHHHHCCeeeCCCCHHHEE-----------------Ec--CCCCEEEccccceEeccCCcccccccccccc
Confidence            4566777777766666655543332222                 11  245699999999975332  23346789999


Q ss_pred             cCCccccCC----------------------------C------------------------------------------
Q psy2006         178 RAPERYMAS----------------------------D------------------------------------------  187 (351)
Q Consensus       178 ~~pe~~~~~----------------------------~------------------------------------------  187 (351)
                      ++||.+...                            .                                          
T Consensus       176 ~aPE~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (290)
T cd07862         176 RAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKF  255 (290)
T ss_pred             cChHHHhCCCCCCccchHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhchhhhcccchhccCCCCCCHHHH
Confidence            999954211                            0                                          


Q ss_pred             -hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         188 -DEEHRQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       188 -~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                       ....+.+.+++.+||..+|++|||+.++|.||||
T Consensus       256 ~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         256 VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             ccCCCHHHHHHHHHHhccCchhcCCHHHHhcCCCC
Confidence             0012345689999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=98.30  E-value=5.4e-07  Score=82.57  Aligned_cols=78  Identities=26%  Similarity=0.336  Sum_probs=60.9

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC-------------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS-------------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~-------------------------------------------  186 (351)
                      .+.++|+|||+++..........|++.|++||.+...                                           
T Consensus       137 ~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~  216 (291)
T cd05612         137 EGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILAGKLE  216 (291)
T ss_pred             CCCEEEEecCcchhccCCcccccCChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCcC
Confidence            4569999999998765555567899999999954321                                           


Q ss_pred             -ChhhHHHHHHHHHHhhccCCCCCCC-----hhhhhcCCCCCCCCch
Q psy2006         187 -DDEEHRQLFDLISKMLEYEPSERIS-----LSEALRHPFFDKLPSS  227 (351)
Q Consensus       187 -~~~~~~~~~~~i~~~L~~~p~~R~t-----~~e~l~~~~~~~~~~~  227 (351)
                       +...+..+.++|.+||..||.+|++     +++++.||||....+.
T Consensus       217 ~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~~~~  263 (291)
T cd05612         217 FPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWD  263 (291)
T ss_pred             CCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCccccCCCHH
Confidence             0112346789999999999999995     9999999999876653

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=98.29  E-value=8.3e-07  Score=81.76  Aligned_cols=34  Identities=41%  Similarity=0.663  Sum_probs=30.8

Q ss_pred             HHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         193 QLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       193 ~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      ++.+++.+||.+||.+|+|+.++|.||||...+.
T Consensus       263 ~~~dli~~mL~~dp~~R~s~~~~l~h~~f~~~~~  296 (303)
T cd07869         263 HAEDLASKLLQCFPKNRLSAQAALSHEYFSDLPP  296 (303)
T ss_pred             HHHHHHHHHhccCchhccCHHHHhcCcccccCCh
Confidence            4668999999999999999999999999987664

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=98.27  E-value=2.2e-06  Score=81.08  Aligned_cols=32  Identities=53%  Similarity=0.818  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                      +++.++|.+||.+||++|+|+.|+|.||||..
T Consensus       289 ~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~  320 (359)
T cd07876         289 SQARDLLSKMLVIDPDKRISVDEALRHPYITV  320 (359)
T ss_pred             hhHHHHHHHHhccCcccCCCHHHHhcCchhhh
Confidence            35679999999999999999999999999864

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>KOG4717|consensus

Probab=98.26  E-value=1.1e-06  Score=83.58  Aligned_cols=83  Identities=23%  Similarity=0.345  Sum_probs=66.8

Q ss_pred             CCCCeEEeecCCccc--CCCCcccccCCCCccCCccccCCC---------------------------------------
Q psy2006         149 RRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~--~~~~~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      |-+-+||.|||++..  ..+..++.||+..|-+||.+.+..                                       
T Consensus       154 KlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDsYDAPAVDiWSLGVILyMLVCGq~PFqeANDSETLTmImD  233 (864)
T KOG4717|consen  154 KLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDSYDAPAVDIWSLGVILYMLVCGQPPFQEANDSETLTMIMD  233 (864)
T ss_pred             ecCceEeeeccccccCCCcchhhcccchhhccCchhhhcCccCCcchhhhHHHHHHHHHHhCCCccccccchhhhhhhhc
Confidence            556689999999954  566688899999999999776541                                       


Q ss_pred             ------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         188 ------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       188 ------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                            .--+.+..++|.+||..||.+|.+++++..++|++....+....
T Consensus       234 CKYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq~~D~~~sT~  283 (864)
T KOG4717|consen  234 CKYTVPSHVSKECRDLIQSMLVRDPKKRASLEEIVSTSWLQAGDRGLSTA  283 (864)
T ss_pred             ccccCchhhhHHHHHHHHHHHhcCchhhccHHHHhccccccCCCCCcccc
Confidence                  12235677999999999999999999999999998766554443

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=98.26  E-value=2.1e-06  Score=80.27  Aligned_cols=78  Identities=26%  Similarity=0.371  Sum_probs=62.1

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC----------------------------Ch-------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS----------------------------DD-------------  188 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~----------------------------~~-------------  188 (351)
                      .++++|+|||+++..........||+.|++||.+...                            ..             
T Consensus       137 ~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~  216 (333)
T cd05600         137 SGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLKYWKET  216 (333)
T ss_pred             CCCEEEEeCcCCcccccccCCcccCccccChhHhcCCCCCCccceecchHHHhhhhhCCCCCCCCCHHHHHHHHHhcccc
Confidence            4679999999998766555667899999999954211                            00             


Q ss_pred             -----------hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         189 -----------EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       189 -----------~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                                 ..++++.++|.+||..+|.+|+++.+++.||||....+.
T Consensus       217 ~~~~~~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~~~~  266 (333)
T cd05600         217 LQRPVYDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNHPFFKEVDWN  266 (333)
T ss_pred             ccCCCCCccccccCHHHHHHHHHHhhChhhhcCCHHHHHhCcccCCCCHH
Confidence                       114678899999999999999999999999999987654

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=98.26  E-value=7.7e-07  Score=83.64  Aligned_cols=80  Identities=24%  Similarity=0.340  Sum_probs=62.9

Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCC------------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS------------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~------------------------------------------  186 (351)
                      ..++++|+|||+++..+.......||+.|+|||.+...                                          
T Consensus       166 ~~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~i~~~~~  245 (340)
T PTZ00426        166 KDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWTLGIFIYEILVGCPPFYANEPLLIYQKILEGII  245 (340)
T ss_pred             CCCCEEEecCCCCeecCCCcceecCChhhcCHHHHhCCCCCccccccchhhHHHHHhcCCCCCCCCCHHHHHHHHhcCCC
Confidence            35679999999998766656667899999999954211                                          


Q ss_pred             --ChhhHHHHHHHHHHhhccCCCCCC-----ChhhhhcCCCCCCCCchh
Q psy2006         187 --DDEEHRQLFDLISKMLEYEPSERI-----SLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       187 --~~~~~~~~~~~i~~~L~~~p~~R~-----t~~e~l~~~~~~~~~~~~  228 (351)
                        +...++.+.++|.+||..+|.+|+     ++++++.||||....|..
T Consensus       246 ~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~~~~~  294 (340)
T PTZ00426        246 YFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNIDWVS  294 (340)
T ss_pred             CCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCCCCHHH
Confidence              011235678999999999999995     899999999999877654

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=98.26  E-value=1.3e-06  Score=79.75  Aligned_cols=78  Identities=26%  Similarity=0.333  Sum_probs=58.5

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccCC----------------------C------------------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMAS----------------------D------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~----------------------~------------------  187 (351)
                      .+.++|+|||++....  .......|++.|++||.+...                      .                  
T Consensus       138 ~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~DvwslGvil~el~~g~~pf~~~~~~~~~~~~~~~~  217 (285)
T cd05631         138 RGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEKYTFSPDWWGLGCLIYEMIQGQSPFRKRKERVKREEVDRRV  217 (285)
T ss_pred             CCCEEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhcCCCCCcccCchhHHHHHHHHHhCCCCCCCCCcchhHHHHHHHh
Confidence            4568999999997632  223456789999999954321                      0                  


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCC-----hhhhhcCCCCCCCCch
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERIS-----LSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t-----~~e~l~~~~~~~~~~~  227 (351)
                              ...++++.+++.+||..+|.+|++     ++++++||||....+.
T Consensus       218 ~~~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~~~~  270 (285)
T cd05631         218 KEDQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNINFK  270 (285)
T ss_pred             hcccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCCCHH
Confidence                    012346779999999999999987     8999999999886653

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=98.26  E-value=2.2e-06  Score=80.81  Aligned_cols=32  Identities=50%  Similarity=0.809  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         193 QLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       193 ~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      ++.++|.+||..||.+|+|+.++|+||||+..
T Consensus       286 ~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~  317 (355)
T cd07874         286 QARDLLSKMLVIDPAKRISVDEALQHPYINVW  317 (355)
T ss_pred             HHHHHHHHHhcCCchhcCCHHHHhcCcchhcc
Confidence            46789999999999999999999999999643

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>KOG0601|consensus

Probab=98.25  E-value=1.8e-06  Score=83.70  Aligned_cols=190  Identities=17%  Similarity=0.020  Sum_probs=127.5

Q ss_pred             CccccCcccceEEEEEEe-ecCcEEEEEEecch---hhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVY-EVDSVVALKIIKNV---EKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~-~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +.+||.|.|+.|+.+.-+ .++..|++|-+.+.   .........|+.+...+. |.+      ++..+..|...++.+|
T Consensus       270 v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~------~~g~~~~W~~~r~~~i  343 (524)
T KOG0601|consen  270 VSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLP------SVGKNSSWSQLRQGYI  343 (524)
T ss_pred             eEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccc------cCCCCCCccccccccC
Confidence            357999999999988754 68889999998653   122233456777777765 233      8888889988889999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      --||| ++++...+...  ..+.+...+++..|++.+                       +.++|++.++|+|++++||.
T Consensus       344 p~e~~~~~s~~l~~~~~--~~~d~~~~~~~~~q~~~~-----------------------l~~i~s~~~~~~d~~psni~  398 (524)
T KOG0601|consen  344 PLEFCEGGSSSLRSVTS--QMLDEDPRLRLTAQILTA-----------------------LNVIHSKLFVHLDVKPSNIL  398 (524)
T ss_pred             chhhhcCcchhhhhHHH--HhcCcchhhhhHHHHHhc-----------------------cccccchhhhccccccccee
Confidence            99999 88776655322  246677777777777777                       99999999999999999985


Q ss_pred             Eee---------cCCcccCCCCcccccCCCCccC-Ccccc----------------------------------------
Q psy2006         155 LID---------FGSATFDDEHHSTIVSTRHYRA-PERYM----------------------------------------  184 (351)
Q Consensus       155 l~D---------fg~s~~~~~~~~~~~~~~~~~~-pe~~~----------------------------------------  184 (351)
                      +..         ||...........+...-.+.+ .|.+.                                        
T Consensus       399 i~~~~~~~~~~~~~~~t~~~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~~~~i~~~  478 (524)
T KOG0601|consen  399 ISNDGFFSKLGDFGCWTRLAFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQSLTIRSG  478 (524)
T ss_pred             eccchhhhhccccccccccceecccccccccccccchhhccccccccccccccccccccccccCcccCcccccceeeecc
Confidence            554         4444321111111111111111 11000                                        


Q ss_pred             --CCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         185 --ASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       185 --~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                        ........++..+...|...++..|+.+.++..+..|
T Consensus       479 ~~p~~~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~  517 (524)
T KOG0601|consen  479 DTPNLPGLKLQLQVLLKVMINPDRKRRPSAVELSLHSEF  517 (524)
T ss_pred             cccCCCchHHhhhhhhhhhcCCccccchhhhhhcccchh
Confidence              0012233677788888899999999999888777655

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=98.25  E-value=8.2e-07  Score=82.96  Aligned_cols=78  Identities=22%  Similarity=0.377  Sum_probs=60.8

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC----------------------------C--------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS----------------------------D--------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~----------------------------~--------------  187 (351)
                      .++++|+|||+++..........||+.|++||.+...                            .              
T Consensus       154 ~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~  233 (329)
T PTZ00263        154 KGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILAGRLK  233 (329)
T ss_pred             CCCEEEeeccCceEcCCCcceecCChhhcCHHHHcCCCCCCcceeechHHHHHHHHcCCCCCCCCCHHHHHHHHhcCCcC
Confidence            5679999999998765555567899999999954321                            0              


Q ss_pred             --hhhHHHHHHHHHHhhccCCCCCCC-----hhhhhcCCCCCCCCch
Q psy2006         188 --DEEHRQLFDLISKMLEYEPSERIS-----LSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 --~~~~~~~~~~i~~~L~~~p~~R~t-----~~e~l~~~~~~~~~~~  227 (351)
                        ...+..+.++|.+||..||.+|++     +++++.||||....+.
T Consensus       234 ~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~~~~~  280 (329)
T PTZ00263        234 FPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGANWD  280 (329)
T ss_pred             CCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCCCCHH
Confidence              012245779999999999999987     7999999999876554

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=98.24  E-value=2e-06  Score=79.68  Aligned_cols=77  Identities=32%  Similarity=0.551  Sum_probs=57.3

Q ss_pred             CCCeEEeecCCcccC---CCCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||+++..   ........||+.|++||.+...                                        
T Consensus       129 ~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwslGvil~el~tg~~pf~~~~~~~~~~~~~~~  208 (312)
T cd05585         129 QGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKILQE  208 (312)
T ss_pred             CCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCCCccceechhHHHHHHHhCCCCcCCCCHHHHHHHHHcC
Confidence            456999999999752   2223346799999999954321                                        


Q ss_pred             ----ChhhHHHHHHHHHHhhccCCCCCC---ChhhhhcCCCCCCCCc
Q psy2006         187 ----DDEEHRQLFDLISKMLEYEPSERI---SLSEALRHPFFDKLPS  226 (351)
Q Consensus       187 ----~~~~~~~~~~~i~~~L~~~p~~R~---t~~e~l~~~~~~~~~~  226 (351)
                          ....++++.++|.+||..||.+|+   ++.+++.||||....+
T Consensus       209 ~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~hp~~~~~~~  255 (312)
T cd05585         209 PLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQLSW  255 (312)
T ss_pred             CCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcCCCcCCCCH
Confidence                011235678999999999999997   5799999999987644

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG1243|consensus

Probab=98.23  E-value=2.2e-06  Score=84.19  Aligned_cols=109  Identities=16%  Similarity=0.148  Sum_probs=77.7

Q ss_pred             EE-EEEEeecCcEEEEEEecchhh-hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-CCCHHHHH
Q psy2006          12 VC-TNVVYEVDSVVALKIIKNVEK-YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-GLSVFDFL   88 (351)
Q Consensus        12 V~-~~~~~~~~~~vAiK~~~~~~~-~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-g~sL~~~l   88 (351)
                      || .|..+.++.+|.+.+++..+. ..+-+.+-++-|+.++|++      |+++++.++..+++|||+|-+ +  |..++
T Consensus        27 ~~~~~t~k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~------Il~yL~t~e~~~~~ylvTErV~P--l~~~l   98 (690)
T KOG1243|consen   27 LWPDGTRKADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPN------ILSYLDTTEEEGTLYLVTERVRP--LETVL   98 (690)
T ss_pred             cccccceeccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCch------hhhhhhhhcccCceEEEeecccc--HHHHH
Confidence            55 467778999999999987543 1234566778899999888      999999999999999999988 4  33444


Q ss_pred             HhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccc-cccccccccCCCCeEEe
Q psy2006          89 KENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN-KKKREVRRVRRCDIRLI  156 (351)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH-~~~i~h~d~k~~ni~l~  156 (351)
                      ++..     ...+.--                       +.|++.||.||| +.+++|+++.-..|.+.
T Consensus        99 k~l~-----~~~v~~G-----------------------l~qIl~AL~FL~~d~~lvHgNv~~~SVfVn  139 (690)
T KOG1243|consen   99 KELG-----KEEVCLG-----------------------LFQILAALSFLNDDCNLVHGNVCKDSVFVN  139 (690)
T ss_pred             HHhH-----HHHHHHH-----------------------HHHHHHHHHHHhccCCeeeccEeeeeEEEc
Confidence            4432     2223333                       445555599997 56789998765544443

>KOG0582|consensus

Probab=98.22  E-value=1.6e-06  Score=81.05  Aligned_cols=80  Identities=30%  Similarity=0.444  Sum_probs=58.0

Q ss_pred             CCCCeEEeecCCcccC-CCCc------ccccCCCCccCCccccCC-----------------------------------
Q psy2006         149 RRCDIRLIDFGSATFD-DEHH------STIVSTRHYRAPERYMAS-----------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~-~~~~------~~~~~~~~~~~pe~~~~~-----------------------------------  186 (351)
                      ..++|+|+|||.+... +...      ..+.||+.|++||.++..                                   
T Consensus       161 ~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~~GYdfKaDIwSfGITA~ELA~G~aPf~k~pPmkv  240 (516)
T KOG0582|consen  161 SDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQLHGYDFKADIWSFGITACELAHGHAPFSKYPPMKV  240 (516)
T ss_pred             CCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcccCccchhhhhhhhHHHHHHhcCCCCcccCChHHH
Confidence            3789999999998651 1111      346899999999963211                                   


Q ss_pred             --------C------hhhH-------HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         187 --------D------DEEH-------RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       187 --------~------~~~~-------~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                              +      ....       -.+..+|..||.+||.+|||++++|.|+||+......
T Consensus       241 Ll~tLqn~pp~~~t~~~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh~FFk~~k~~~  303 (516)
T KOG0582|consen  241 LLLTLQNDPPTLLTSGLDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKHAFFKKAKSKE  303 (516)
T ss_pred             HHHHhcCCCCCcccccCChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhccHHHhhccchh
Confidence                    0      0011       2366899999999999999999999999998755433

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=98.22  E-value=3.2e-06  Score=84.71  Aligned_cols=33  Identities=33%  Similarity=0.678  Sum_probs=29.5

Q ss_pred             HHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         195 FDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       195 ~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      ++||.+||.+||.+|+|+.++|+||||+.....
T Consensus       427 ~dLi~~mL~~dP~kR~ta~e~L~Hpff~~~~~~  459 (566)
T PLN03225        427 WELLKSMMRFKGRQRISAKAALAHPYFDREGLL  459 (566)
T ss_pred             HHHHHHHccCCcccCCCHHHHhCCcCcCCCCcc
Confidence            379999999999999999999999999875543

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=98.21  E-value=1.7e-06  Score=80.47  Aligned_cols=78  Identities=27%  Similarity=0.417  Sum_probs=58.9

Q ss_pred             CCCeEEeecCCcccC---CCCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||+++..   ........||+.|++||.+...                                        
T Consensus       132 ~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~i~~~  211 (320)
T cd05590         132 EGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILND  211 (320)
T ss_pred             CCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcC
Confidence            456999999998753   2223446799999999954321                                        


Q ss_pred             ----ChhhHHHHHHHHHHhhccCCCCCCCh------hhhhcCCCCCCCCch
Q psy2006         187 ----DDEEHRQLFDLISKMLEYEPSERISL------SEALRHPFFDKLPSS  227 (351)
Q Consensus       187 ----~~~~~~~~~~~i~~~L~~~p~~R~t~------~e~l~~~~~~~~~~~  227 (351)
                          ....++++.++|.+||..||.+|+++      ++++.||||....+.
T Consensus       212 ~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~~~~  262 (320)
T cd05590         212 EVVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWE  262 (320)
T ss_pred             CCCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcCCCCHH
Confidence                00123567899999999999999998      899999999887654

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	351
3nr9_A	368	Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length		5e-50
3nr9_A	368	Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length		4e-39
2exe_A	357	Crystal Structure Of The Phosphorylated Clk3 Length		1e-43
2exe_A	357	Crystal Structure Of The Phosphorylated Clk3 Length		1e-34
2wu6_A	381	Crystal Structure Of The Human Clk3 In Complex With		1e-43
2wu6_A	381	Crystal Structure Of The Human Clk3 In Complex With		1e-34
2eu9_A	355	Crystal Structure Of Clk3 Length = 355		1e-43
2eu9_A	355	Crystal Structure Of Clk3 Length = 355		2e-34
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		1e-40
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		1e-34
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		2e-39
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		2e-33
3llt_A	360	Crystal Structure Of Pf14_0431, Kinase Domain Lengt		5e-16
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		4e-12
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		2e-10
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		4e-12
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		1e-10
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		2e-11
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		6e-10
1how_A	373	The X-Ray Crystal Structure Of Sky1p, An Sr Protein		2e-10
1how_A	373	The X-Ray Crystal Structure Of Sky1p, An Sr Protein		6e-10
1q8y_A	373	The Structure Of The Yeast Sr Protein Kinase, Sky1p		2e-10
1q8y_A	373	The Structure Of The Yeast Sr Protein Kinase, Sky1p		6e-10
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		4e-10
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		4e-10
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		5e-10
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		5e-10
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		6e-10
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		6e-10
4exu_A	371	Mapk13, Inactive Form Length = 371		6e-10
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		6e-10
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		6e-10
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		7e-10
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		7e-10
2oza_B	366	Structure Of P38alpha Complex Length = 366		7e-10
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		7e-10
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		7e-10
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		7e-10
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		7e-10
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		7e-10
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		7e-10
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		7e-10
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		7e-10
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		7e-10
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		7e-10
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		7e-10
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		7e-10
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		7e-10
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		7e-10
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		7e-10
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		7e-10
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		7e-10
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		7e-10
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		7e-10
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		7e-10
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		7e-10
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		7e-10
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		7e-10
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		7e-10
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		8e-10
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		8e-10
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		8e-10
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		8e-10
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		8e-10
3hec_A	348	P38 In Complex With Imatinib Length = 348		8e-10
3beg_A	381	Crystal Structure Of Sr Protein Kinase 1 Complexed		8e-10
1wbp_A	397	Srpk1 Bound To 9mer Docking Motif Peptide Length =		8e-10
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		8e-10
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		1e-09
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		1e-09
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		1e-09
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		2e-09
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		3e-09
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		4e-09
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		5e-09
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		5e-09
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		5e-09
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		5e-09
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		6e-09
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		6e-09
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		7e-09
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		7e-09
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		7e-09
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		8e-09
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		8e-09
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		8e-09
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		8e-09
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		8e-09
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		8e-09
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		8e-09
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		8e-09
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		1e-08
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		1e-08
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		1e-08
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		1e-08
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		1e-08
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		2e-08
2vx3_A	382	Crystal Structure Of The Human Dual Specificity Tyr		2e-08
2vx3_A	382	Crystal Structure Of The Human Dual Specificity Tyr		7e-07
3anq_A	368	Human Dyrk1aINHIBITOR COMPLEX Length = 368		2e-08
3anq_A	368	Human Dyrk1aINHIBITOR COMPLEX Length = 368		8e-07
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		3e-08
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		7e-07
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		3e-08
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		4e-08
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		4e-08
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		4e-08
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		4e-08
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		4e-08
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		4e-08
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		4e-08
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		4e-08
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		4e-08
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		4e-08
3d5u_A	317	Crystal Structure Of A Wildtype Polo-Like Kinase 1		6e-08
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		7e-08
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		7e-08
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		7e-08
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		8e-08
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		9e-08
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		1e-07
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		1e-07
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		1e-07
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		1e-07
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		2e-07
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		2e-07
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		2e-07
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		2e-07
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		2e-07
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		2e-07
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		2e-07
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		2e-07
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		2e-07
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		2e-07
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		2e-07
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		2e-07
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-07
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		2e-07
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		2e-07
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		2e-07
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		2e-07
3d5w_A	317	Crystal Structure Of A Phosphorylated Polo-Like Kin		3e-07
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		3e-07
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		3e-07
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		3e-07
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		3e-07
2yac_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		3e-07
3kb7_A	311	Crystal Structure Of Polo-Like Kinase 1 In Complex		3e-07
2v5q_A	315	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-07
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		3e-07
3d5v_A	317	Crystal Structure Of An Activated (Thr->asp) Polo-L		3e-07
3db6_A	301	Crystal Structure Of An Activated (Thr->asp) Polo-L		4e-07
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		4e-07
2x7g_A	389	Structure Of Human Serine-Arginine-Rich Protein-Spe		5e-07
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		6e-07
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		7e-07
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		8e-07
3thb_A	333	Structure Of Plk1 Kinase Domain In Complex With A B		1e-06
2ou7_A	335	Structure Of The Catalytic Domain Of Human Polo-Lik		1e-06
2rku_A	294	Structure Of Plk1 In Complex With Bi2536 Length = 2		1e-06
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		1e-06
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		2e-06
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		2e-06
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		2e-06
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		2e-06
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		2e-06
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		2e-06
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		2e-06
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		2e-06
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		3e-06
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		3e-06
3eb0_A	383	Crystal Structure Of Cgd4_240 From Cryptosporidium		3e-06
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-06
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-06
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		3e-06
3kn5_A	325	Crystal Structure Of The C-Terminal Kinase Domain O		5e-06
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		8e-06
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		8e-06
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		8e-06
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		9e-06
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		9e-06
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		9e-06
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		9e-06
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		1e-05
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		1e-05
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		1e-05
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		1e-05
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		1e-05
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		1e-05
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		1e-05
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		1e-05
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		1e-05
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		1e-05
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		1e-05
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		1e-05
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		1e-05
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		1e-05
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		1e-05
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		1e-05
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		1e-05
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		2e-05
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		4e-05
3cok_A	278	Crystal Structure Of Plk4 Kinase Length = 278		5e-05
2w5a_A	279	Human Nek2 Kinase Adp-Bound Length = 279		7e-05
3pg1_A	362	Map Kinase Lmampk10 From Leishmania Major (1.95 Ang		8e-05
3pg1_A	362	Map Kinase Lmampk10 From Leishmania Major (1.95 Ang		2e-04
2f7e_E	351	Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoqu		8e-05
3uib_A	362	Map Kinase Lmampk10 From Leishmania Major In Comple		8e-05
3uib_A	362	Map Kinase Lmampk10 From Leishmania Major In Comple		2e-04
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		9e-05
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		9e-05
2uzt_A	336	Pka Structures Of Akt, Indazole-Pyridine Inhibitors		9e-05
4dfy_A	371	Crystal Structure Of R194a Mutant Of Camp-Dependent		1e-04
4a4x_A	279	Nek2-Ede Bound To Cct248662 Length = 279		1e-04
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		1e-04
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		1e-04
2f2u_A	402	Crystal Structure Of The Rho-Kinase Kinase Domain L		1e-04
3nax_A	311	Pdk1 In Complex With Inhibitor Mp7 Length = 311		2e-04
2r7b_A	312	Crystal Structure Of The Phosphoinositide-Dependent		2e-04
3fhi_A	350	Crystal Structure Of A Complex Between The Catalyti		2e-04
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		2e-04
2biy_A	310	Structure Of Pdk1-S241a Mutant Kinase Domain Length		2e-04
3l9m_A	351	Crystal Structure Of Pkab3 (Pka Triple Mutant V123a		2e-04
2jdt_A	351	Structure Of Pka-Pkb Chimera Complexed With Isoquin		2e-04
1szm_A	350	Dual Binding Mode Of Bisindolylmaleimide 2 To Prote		2e-04
1q61_A	350	Pka Triple Mutant Model Of Pkb Length = 350		2e-04
1xh9_A	350	Crystal Structures Of Protein Kinase B Selective In		2e-04
2vo0_A	351	Structure Of Pka-Pkb Chimera Complexed With C-(4-(4		2e-04
2uvy_A	351	Structure Of Pka-pkb Chimera Complexed With Methyl-		2e-04
2jav_A	279	Human Kinase With Pyrrole-Indolinone Ligand Length		2e-04
3q4z_A	306	Structure Of Unphosphorylated Pak1 Kinase Domain Le		3e-04
4a07_A	311	Human Pdk1 Kinase Domain In Complex With Allosteric		3e-04
1f3m_C	297	Crystal Structure Of Human SerineTHREONINE KINASE P		3e-04
1j3h_A	350	Crystal Structure Of Apoenzyme Camp-Dependent Prote		3e-04
3nus_A	286	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fra		3e-04
3rwp_A	311	Discovery Of A Novel, Potent And Selective Inhibito		3e-04
3ama_A	351	Protein Kinase A Sixfold Mutant Model Of Aurora B W		3e-04
2gng_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		3e-04
1z5m_A	286	Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrr		3e-04
1uu9_A	286	Structure Of Human Pdk1 Kinase Domain In Complex Wi		3e-04
3nay_A	311	Pdk1 In Complex With Inhibitor Mp6 Length = 311		3e-04
2xck_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-04
2gnf_A	350	Protein Kinase A Fivefold Mutant Model Of Rho-Kinas		3e-04
2gnj_A	350	Pka Three Fold Mutant Model Of Rho-Kinase With Y-27		3e-04
1uu3_A	310	Structure Of Human Pdk1 Kinase Domain In Complex Wi		3e-04
1h1w_A	289	High Resolution Crystal Structure Of The Human Pdk1		3e-04
3sc1_A	311	Novel Isoquinolone Pdk1 Inhibitors Discovered Throu		3e-04
2xch_A	309	Crystal Structure Of Pdk1 In Complex With A Pyrazol		3e-04
3iop_A	312	Pdk-1 In Complex With The Inhibitor Compound-8i Len		3e-04
3h9o_A	311	Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1)		3e-04
3hrc_A	311	Crystal Structure Of A Mutant Of Human Pdk1 Kinase		3e-04
3nun_A	292	Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lea		3e-04
3orx_A	316	Pdk1 Mutant Bound To Allosteric Disulfide Fragment		3e-04
3qc4_A	314	Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length =		3e-04
1l3r_E	350	Crystal Structure Of A Transition State Mimic Of Th		3e-04
1apm_E	350	2.0 Angstrom Refined Crystal Structure Of The Catal		3e-04
1q8w_A	350	The Catalytic Subunit Of Camp-Dependent Protein Kin		3e-04
4dfx_E	350	Crystal Structure Of Myristoylated K7c Catalytic Su		3e-04
1ctp_E	350	Structure Of The Mammalian Catalytic Subunit Of Cam		3e-04
3agm_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		3e-04
1stc_E	350	Camp-Dependent Protein Kinase, Alpha-Catalytic Subu		3e-04
1fmo_E	350	Crystal Structure Of A Polyhistidine-Tagged Recombi		4e-04
3agl_A	351	Complex Of Pka With The Bisubstrate Protein Kinase		4e-04
2qcs_A	350	A Complex Structure Between The Catalytic And Regul		4e-04
1bkx_A	350	A Binary Complex Of The Catalytic Subunit Of Camp-D		4e-04
2erz_E	351	Crystal Structure Of C-amp Dependent Kinase (pka) B		4e-04
1svh_A	350	Crystal Structure Of Protein Kinase A In Complex Wi		4e-04
1q24_A	350	Pka Double Mutant Model Of Pkb In Complex With Mgat		4e-04
2jds_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		4e-04
2c1a_A	351	Structure Of Camp-Dependent Protein Kinase Complexe		4e-04
1xh7_A	350	Crystal Structures Of Protein Kinase B Selective In		4e-04
3qal_E	350	Crystal Structure Of Arg280ala Mutant Of Catalytic		4e-04
1cdk_A	350	Camp-Dependent Protein Kinase Catalytic Subunit (E.		4e-04
1jbp_E	350	Crystal Structure Of The Catalytic Subunit Of Camp-		4e-04
3dnd_A	350	Camp-Dependent Protein Kinase Pka Catalytic Subunit		4e-04
2qur_A	350	Crystal Structure Of F327aK285P MUTANT OF CAMP-Depe		4e-04
1ydt_E	350	Structure Of Camp-Dependent Protein Kinase, Alpha-C		4e-04
1smh_A	350	Protein Kinase A Variant Complex With Completely Or		4e-04
3nx8_A	351	Human Camp Dependent Protein Kinase In Complex With		4e-04
1cmk_E	350	Crystal Structures Of The Myristylated Catalytic Su		4e-04
4dg3_E	371	Crystal Structure Of R336a Mutant Of Camp-dependent		4e-04
4ae6_A	343	Structure And Function Of The Human Sperm-specific		4e-04
3pvb_A	345	Crystal Structure Of (73-244)ria:c Holoenzyme Of Ca		4e-04
3mvj_A	371	Human Cyclic Amp-Dependent Protein Kinase Pka Inhib		4e-04
4ae9_A	343	Structure And Function Of The Human Sperm-specific		4e-04
2gu8_A	337	Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel		4e-04
3rp9_A	458	Crystal Structure Of The Apo Mapk From Toxoplasma G		5e-04
1kwp_A	400	Crystal Structure Of Mapkap2 Length = 400		6e-04
2onl_C	406	Crystal Structure Of The P38a-Mapkap Kinase 2 Heter		7e-04
2oza_A	356	Structure Of P38alpha Complex Length = 356		7e-04
3o7l_B	350	Crystal Structure Of Phospholamban (1-19):pka C-Sub		7e-04
3g51_A	325	Structural Diversity Of The Active Conformation Of		7e-04
3r2y_A	319	Mk2 Kinase Bound To Compound 1 Length = 319		7e-04
3gok_A	334	Binding Site Mapping Of Protein Ligands Length = 33		7e-04
3fpm_A	325	Crystal Structure Of A Squarate Inhibitor Bound To		7e-04
2pzy_A	324	Structure Of Mk2 Complexed With Compound 76 Length		7e-04
2p3g_X	327	Crystal Structure Of A Pyrrolopyridine Inhibitor Bo		7e-04
3r2b_A	318	Mk2 Kinase Bound To Compound 5b Length = 318		8e-04
2jbo_A	326	Protein Kinase Mk2 In Complex With An Inhibitor (Cr		8e-04
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		8e-04
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		8e-04
2wnt_A	330	Crystal Structure Of The Human Ribosomal Protein S6		8e-04
3ggf_A	301	Crystal Structure Of Human SerineTHREONINE-Protein		8e-04
2qr8_A	342	2.0a X-ray Structure Of C-terminal Kinase Domain Of		8e-04
3q5i_A	504	Crystal Structure Of Pbanka_031420 Length = 504		8e-04
1syk_A	350	Crystal Structure Of E230q Mutant Of Camp-Dependent		8e-04
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		8e-04
3rny_A	346	Crystal Structure Of Human Rsk1 C-Terminal Kinase D		8e-04
3is5_A	285	Crystal Structure Of Cdpk Kinase Domain From Toxopl		9e-04

>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length = 368

Iteration: 1
 Score =  194 bits (494), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 97/162 (59%), Positives = 115/162 (70%), Gaps = 4/162 (2%)
Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VALKIIKNVEKY+EAARLEIN L+KI EKDP+ ++LCV+M DWFDYHGHMCI+FE+LGLS
Sbjct: 62  VALKIIKNVEKYKEAARLEINVLEKINEKDPDNKNLCVQMFDWFDYHGHMCISFELLGLS 121
Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYAVDYNN 139
            FDFLK+NNYLPY + QVRHM++QL  A     +N      L     +     Y + YN 
Sbjct: 122 TFDFLKDNNYLPYPIHQVRHMAFQLCQAVKFLHDNKLTHTDLKPENILFVNSDYELTYNL 181
Query: 140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                        +R++DFGSATFD EHHSTIVSTRHYRAPE
Sbjct: 182 EKKRDERSVKSTAVRVVDFGSATFDHEHHSTIVSTRHYRAPE 223

>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length = 368

Iteration: 1
 Score =  158 bits (400), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/116 (66%), Positives = 84/116 (72%), Gaps = 24/116 (20%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL-- 313
           +R++DFGSATFD EHHSTIVSTRHYRAPEVILELGW+QPCDVWSIGCIIFE Y+G TL  
Sbjct: 195 VRVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVGFTLFQ 254
Query: 314 ---------------------MARKT-KTKYFYHGKLDWDEKGTAGRYVRENCKPL 347
                                M RKT K KYFY G+LDWDE  +AGRYVRENCKPL
Sbjct: 255 THDNREHLAMMERILGPIPSRMIRKTRKQKYFYRGRLDWDENTSAGRYVRENCKPL 310

>pdb|2EXE|A Chain A, Crystal Structure Of The Phosphorylated Clk3 Length = 357

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 106/164 (64%), Gaps = 4/164 (2%)
Query: 22  SVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG 81
           S VALKII+NV KYREAARLEIN L+KI EKD   + LCV M DWF++HGHMCIAFE+LG
Sbjct: 55  SQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 114
Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYAVDY 137
            + F+FLKENN+ PY L  VRHM+YQL +A     EN      L     +     +   Y
Sbjct: 115 KNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLY 174
Query: 138 NNXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           N              IR+ DFGSATFD EHH+TIV+TRHYR PE
Sbjct: 175 NEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPE 218

>pdb|2EXE|A Chain A, Crystal Structure Of The Phosphorylated Clk3 Length = 357

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/116 (59%), Positives = 75/116 (64%), Gaps = 24/116 (20%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA 315
           IR+ DFGSATFD EHH+TIV+TRHYR PEVILELGWAQPCDVWSIGCI+FE Y G TL  
Sbjct: 190 IRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQ 249
Query: 316 ------------------------RKTKTKYFYHGKLDWDEKGTAGRYVRENCKPL 347
                                   R  K KYFY G L WDE  + GRYV+ENCKPL
Sbjct: 250 THENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPL 305

>pdb|2WU6|A Chain A, Crystal Structure Of The Human Clk3 In Complex With Dki Length = 381

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 106/164 (64%), Gaps = 4/164 (2%)
Query: 22  SVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG 81
           S VALKII+NV KYREAARLEIN L+KI EKD   + LCV M DWF++HGHMCIAFE+LG
Sbjct: 78  SQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 137
Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYAVDY 137
            + F+FLKENN+ PY L  VRHM+YQL +A     EN      L     +     +   Y
Sbjct: 138 KNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLY 197
Query: 138 NNXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           N              IR+ DFGSATFD EHH+TIV+TRHYR PE
Sbjct: 198 NEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPE 241

>pdb|2WU6|A Chain A, Crystal Structure Of The Human Clk3 In Complex With Dki Length = 381

Iteration: 1
 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/116 (59%), Positives = 75/116 (64%), Gaps = 24/116 (20%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA 315
           IR+ DFGSATFD EHH+TIV+TRHYR PEVILELGWAQPCDVWSIGCI+FE Y G TL  
Sbjct: 213 IRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQ 272
Query: 316 ------------------------RKTKTKYFYHGKLDWDEKGTAGRYVRENCKPL 347
                                   R  K KYFY G L WDE  + GRYV+ENCKPL
Sbjct: 273 THENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPL 328

>pdb|2EU9|A Chain A, Crystal Structure Of Clk3 Length = 355

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/164 (54%), Positives = 106/164 (64%), Gaps = 4/164 (2%)
Query: 22  SVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG 81
           S VALKII+NV KYREAARLEIN L+KI EKD   + LCV M DWF++HGHMCIAFE+LG
Sbjct: 46  SQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 105
Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRHMSYQLIYAVDY 137
            + F+FLKENN+ PY L  VRHM+YQL +A     EN      L     +     +   Y
Sbjct: 106 KNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLY 165
Query: 138 NNXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           N              IR+ DFGSATFD EHH+TIV+TRHYR PE
Sbjct: 166 NEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPE 209

>pdb|2EU9|A Chain A, Crystal Structure Of Clk3 Length = 355

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/116 (59%), Positives = 75/116 (64%), Gaps = 24/116 (20%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA 315
           IR+ DFGSATFD EHH+TIV+TRHYR PEVILELGWAQPCDVWSIGCI+FE Y G TL  
Sbjct: 181 IRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQ 240
Query: 316 ------------------------RKTKTKYFYHGKLDWDEKGTAGRYVRENCKPL 347
                                   R  K KYFY G L WDE  + GRYV+ENCKPL
Sbjct: 241 THENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPL 296

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score =  163 bits (413), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 107/166 (64%), Gaps = 4/166 (2%)
Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VA+KI+KNV++Y EAAR EI  L+ +   DPN    CV+ML+WF++HGH+CI FE+LGLS
Sbjct: 43  VAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLS 102
Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLI----YAKENNYLPYSLDQVRHMSYQLIYAVDYNN 139
            +DF+KEN +LP+ LD +R M+YQ+     +   N      L     +  Q  Y   YN 
Sbjct: 103 TYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNP 162
Query: 140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMA 185
                       DI+++DFGSAT+DDEHHST+VSTRHYRAPE  +A
Sbjct: 163 KIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILA 208

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score =  143 bits (361), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 81/117 (69%), Gaps = 24/117 (20%)
Query: 255 DIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL- 313
           DI+++DFGSAT+DDEHHST+VSTRHYRAPEVIL LGW+QPCDVWSIGCI+ E YLG T+ 
Sbjct: 175 DIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVF 234
Query: 314 ----------------------MARKT-KTKYFYHGKLDWDEKGTAGRYVRENCKPL 347
                                 M +KT K KYF+H +LDWDE  +AGRYV   CKPL
Sbjct: 235 PTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPL 291

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score =  159 bits (402), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/166 (46%), Positives = 105/166 (63%), Gaps = 4/166 (2%)
Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VA+KI+KNV++Y EAAR EI  L+ +   DPN    CV+ML+WF++HGH+CI FE+LGLS
Sbjct: 43  VAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLS 102
Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLI----YAKENNYLPYSLDQVRHMSYQLIYAVDYNN 139
            +DF+KEN +LP+ LD +R M+YQ+     +   N      L     +  Q  Y   YN 
Sbjct: 103 TYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNP 162
Query: 140 XXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMA 185
                       DI+++DFGSAT+DDEHHST+V  RHYRAPE  +A
Sbjct: 163 KIKRDERTLINPDIKVVDFGSATYDDEHHSTLVXXRHYRAPEVILA 208

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/117 (57%), Positives = 79/117 (67%), Gaps = 24/117 (20%)
Query: 255 DIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL- 313
           DI+++DFGSAT+DDEHHST+V  RHYRAPEVIL LGW+QPCDVWSIGCI+ E YLG T+ 
Sbjct: 175 DIKVVDFGSATYDDEHHSTLVXXRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVF 234
Query: 314 ----------------------MARKT-KTKYFYHGKLDWDEKGTAGRYVRENCKPL 347
                                 M +KT K KYF+H +LDWDE  +AGRYV   CKPL
Sbjct: 235 PTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPL 291

>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain Length = 360

Iteration: 1
 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/98 (42%), Positives = 55/98 (56%), Gaps = 9/98 (9%)
Query: 216 LRHPFFDKLPSSVRVHAQTQADRIXXXXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIV 275
           L  P+F+K  S + V   T   +I                I+LIDFG ATF  ++H +I+
Sbjct: 170 LDDPYFEK--SLITVRRVTDGKKIQIYRTKS-------TGIKLIDFGCATFKSDYHGSII 220
Query: 276 STRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL 313
           +TR YRAPEVIL LGW    D+WS GC++ ELY G  L
Sbjct: 221 NTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLL 258

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 18  YEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF 77
           ++V   VALK+++N +++   A  EI  L+ + ++D +     + ML+ F +  H+C+ F
Sbjct: 119 HKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTF 178
Query: 78  EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY 137
           E+L +++++ +K+N +  +SL  VR  ++ ++   +      +L + R +   L      
Sbjct: 179 ELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLD------ALHKNRIIHCDL------ 226
Query: 138 NNXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS 186
                          I++IDFGS+ ++ +   T + +R YRAPE  + +
Sbjct: 227 -KPENILLKQQGRSGIKVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGA 274

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM 314
           I++IDFGS+ ++ +   T + +R YRAPEVIL   +  P D+WS+GCI+ EL  G  L+
Sbjct: 241 IKVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLL 299

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 41/169 (24%), Positives = 87/169 (51%), Gaps = 13/169 (7%)
Query: 18  YEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF 77
           ++V   VALK+++N +++   A  EI  L+ + ++D +     + ML+ F +  H+C+ F
Sbjct: 119 HKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTF 178
Query: 78  EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY 137
           E+L +++++ +K+N +  +SL  VR  ++ ++   +      +L + R +   L      
Sbjct: 179 ELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLD------ALHKNRIIHCDL------ 226
Query: 138 NNXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS 186
                          I++IDFGS+ ++ +   T + +R YRAPE  + +
Sbjct: 227 -KPENILLKQQGRSGIKVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGA 274

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM 314
           I++IDFGS+ ++ +   T + +R YRAPEVIL   +  P D+WS+GCI+ EL  G  L+
Sbjct: 241 IKVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLL 299

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/169 (23%), Positives = 86/169 (50%), Gaps = 13/169 (7%)
Query: 18  YEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF 77
           ++V   VALK+++N +++   A  EI  L+ + ++D +     + ML+ F +  H+C+ F
Sbjct: 119 HKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTF 178
Query: 78  EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY 137
           E+L +++++ +K+N +  +SL  VR  ++ ++   +      +L + R +   L      
Sbjct: 179 ELLSMNLYELIKKNKFQGFSLPLVRKFAHSILQCLD------ALHKNRIIHCDL------ 226
Query: 138 NNXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS 186
                          I++IDFGS+ ++ +     + +R YRAPE  + +
Sbjct: 227 -KPENILLKQQGRSGIKVIDFGSSCYEHQRVYXXIQSRFYRAPEVILGA 274

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM 314
           I++IDFGS+ ++ +     + +R YRAPEVIL   +  P D+WS+GCI+ EL  G  L+
Sbjct: 241 IKVIDFGSSCYEHQRVYXXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLL 299

>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase In Yeast Length = 373

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 47/187 (25%)
Query: 24  VALKIIKNVEKYREAARLEINALQKIGE-----KDPNGRHLCVKMLDWFDYHG----HMC 74
           VA+KI++  + Y EAA  EI  LQ++ +     +D  G +  +K+LD F++ G    H+ 
Sbjct: 47  VAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVV 106
Query: 75  IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYA 134
           + FE+LG ++   +K          +  H    LIY             V+ +S QL+  
Sbjct: 107 MVFEVLGENLLALIK----------KYEHRGIPLIY-------------VKQISKQLLLG 143
Query: 135 VDY---------------NNXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRA 179
           +DY               N              I++ D G+A + DEH++  + TR YR+
Sbjct: 144 LDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRS 203
Query: 180 PERYMAS 186
           PE  + +
Sbjct: 204 PEVLLGA 210

>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase In Yeast Length = 373

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ D G+A + DEH++  + TR YR+PEV+L   W    D+WS  C+IFEL  G
Sbjct: 177 IKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITG 231

>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With Bound Adp Length = 373

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 83/187 (44%), Gaps = 47/187 (25%)
Query: 24  VALKIIKNVEKYREAARLEINALQKIGE-----KDPNGRHLCVKMLDWFDYHG----HMC 74
           VA+KI++  + Y EAA  EI  LQ++ +     +D  G +  +K+LD F++ G    H+ 
Sbjct: 47  VAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVV 106
Query: 75  IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYA 134
           + FE+LG ++   +K          +  H    LIY             V+ +S QL+  
Sbjct: 107 MVFEVLGENLLALIK----------KYEHRGIPLIY-------------VKQISKQLLLG 143
Query: 135 VDY---------------NNXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRA 179
           +DY               N              I++ D G+A + DEH++  + TR YR+
Sbjct: 144 LDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRS 203
Query: 180 PERYMAS 186
           PE  + +
Sbjct: 204 PEVLLGA 210

>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With Bound Adp Length = 373

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ D G+A + DEH++  + TR YR+PEV+L   W    D+WS  C+IFEL  G
Sbjct: 177 IKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITG 231

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 158 CELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 217
Query: 313 L 313
           L
Sbjct: 218 L 218

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C++R++DFG A   DE  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G  
Sbjct: 160 CELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKA 219
Query: 313 L 313
           L
Sbjct: 220 L 220

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMTGXVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D   +  V TR YRAPEVIL  + + Q  D+WS+GCI+ E+  G T
Sbjct: 163 CELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKT 222
Query: 313 LMARK 317
           L   K
Sbjct: 223 LFKGK 227

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D   +  V TR YRAPEVIL  + + Q  D+WS+GCI+ E+  G T
Sbjct: 181 CELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKT 240
Query: 313 LMARK 317
           L   K
Sbjct: 241 LFKGK 245

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNAMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 173 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 232
Query: 313 L 313
           L
Sbjct: 233 L 233

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 174 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 233
Query: 313 L 313
           L
Sbjct: 234 L 234

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 168 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 227
Query: 313 L 313
           L
Sbjct: 228 L 228

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 174 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 233
Query: 313 L 313
           L
Sbjct: 234 L 234

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 169 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 228
Query: 313 L 313
           L
Sbjct: 229 L 229

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 174 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 233
Query: 313 L 313
           L
Sbjct: 234 L 234

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 168 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 227
Query: 313 L 313
           L
Sbjct: 228 L 228

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 164 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 223
Query: 313 L 313
           L
Sbjct: 224 L 224

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 168 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 227
Query: 313 L 313
           L
Sbjct: 228 L 228

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 182 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 241
Query: 313 L 313
           L
Sbjct: 242 L 242

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 172 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 231
Query: 313 L 313
           L
Sbjct: 232 L 232

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 167 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 226
Query: 313 L 313
           L
Sbjct: 227 L 227

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 182 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 241
Query: 313 L 313
           L
Sbjct: 242 L 242

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 185 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 244
Query: 313 L 313
           L
Sbjct: 245 L 245

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 167 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 226
Query: 313 L 313
           L
Sbjct: 227 L 227

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 161 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 220
Query: 313 L 313
           L
Sbjct: 221 L 221

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 181 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 240
Query: 313 L 313
           L
Sbjct: 241 L 241

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 164 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 223
Query: 313 L 313
           L
Sbjct: 224 L 224

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 164 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 223
Query: 313 L 313
           L
Sbjct: 224 L 224

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 181 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 240
Query: 313 L 313
           L
Sbjct: 241 L 241

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 158 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 217
Query: 313 L 313
           L
Sbjct: 218 L 218

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 159 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 218
Query: 313 L 313
           L
Sbjct: 219 L 219

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 159 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 218
Query: 313 L 313
           L
Sbjct: 219 L 219

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 160 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 219
Query: 313 L 313
           L
Sbjct: 220 L 220

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 158 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 217
Query: 313 L 313
           L
Sbjct: 218 L 218

>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its Substrate AsfSF2 Length = 381

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 114/293 (38%), Gaps = 74/293 (25%)
Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPN--GRHLCVKMLDWFDYHG----HMCIAF 77
           VA+K++K+ E Y E A  EI  L+ +   DPN   R + V++LD F   G    H+C+  
Sbjct: 49  VAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICM-- 106
Query: 78  EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY 137
                 VF+ L                 + L +  ++NY    L  V+ +  Q++  +DY
Sbjct: 107 ------VFEVLGH---------------HLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDY 145
Query: 138 NNXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDL 197
                           R+I           H+ I        PE  + S +E++  +  L
Sbjct: 146 -----------LHTKCRII-----------HTDI-------KPENILLSVNEQY--IRRL 174
Query: 198 ISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIXXXXXXXXXXXXXXCDIR 257
            ++  E++ S                 P S    +   A                   ++
Sbjct: 175 AAEATEWQRS--------------GAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVK 220
Query: 258 LIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           + D G+A +  +H +  + TR YR+ EV++  G+  P D+WS  C+ FEL  G
Sbjct: 221 IADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 273

>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide Length = 397

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 119/305 (39%), Gaps = 74/305 (24%)
Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPN--GRHLCVKMLDWFDYHG----HMCIAF 77
           VA+K++K+ E Y E A  EI  L+ +   DPN   R + V++LD F   G    H+C+  
Sbjct: 65  VAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICM-- 122
Query: 78  EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY 137
                 VF+ L              H+   +I   ++NY    L  V+ +  Q++  +DY
Sbjct: 123 ------VFEVLG------------HHLLKWII---KSNYQGLPLPCVKKIIQQVLQGLDY 161
Query: 138 NNXXXXXXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDL 197
                           R+I           H+ I        PE  + S +E++  +  L
Sbjct: 162 -----------LHTKCRII-----------HTDI-------KPENILLSVNEQY--IRRL 190
Query: 198 ISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIXXXXXXXXXXXXXXCDIR 257
            ++  E++ S                 P S    +   A                   ++
Sbjct: 191 AAEATEWQRS--------------GAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVK 236
Query: 258 LIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK 317
           + D G+A +  +H +  + TR YR+ EV++  G+  P D+WS  C+ FEL  G  L    
Sbjct: 237 IADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPH 296
Query: 318 TKTKY 322
           +  +Y
Sbjct: 297 SGEEY 301

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 158 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 217
Query: 313 L 313
           L
Sbjct: 218 L 218

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D      V TR YRAPEVIL  + + Q  D+WS+GCI+ E+  G T
Sbjct: 165 CELKILDFGLARQADSEMXGXVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKT 224
Query: 313 L 313
           L
Sbjct: 225 L 225

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+     V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 182 CELKILDFGLARHTDDEMXGXVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 241
Query: 313 L 313
           L
Sbjct: 242 L 242

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+     V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 185 CELKILDFGLARHTDDEMXGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 244
Query: 313 L 313
           L
Sbjct: 245 L 245

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++D+G A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDYGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D+  +  V+TR YRAPE++L  + +    D+WS+GCI+ EL  G T
Sbjct: 191 CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNMTVDIWSVGCIMAELLTGRT 250
Query: 313 L 313
           L
Sbjct: 251 L 251

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++ FG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILGFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A    +  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 169 CELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 228
Query: 313 L 313
           L
Sbjct: 229 L 229

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A    +  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 169 CELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 228
Query: 313 L 313
           L
Sbjct: 229 L 229

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A    +  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 169 CELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 228
Query: 313 L 313
           L
Sbjct: 229 L 229

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
            ++R++DFG A   DE  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G  
Sbjct: 168 SELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKA 227
Query: 313 L 313
           L
Sbjct: 228 L 228

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
            ++R++DFG A   DE  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G  
Sbjct: 168 SELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGKA 227
Query: 313 L 313
           L
Sbjct: 228 L 228

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++D G A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDAGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 254 CDIRLIDFGSATFDDEHHSTI--VSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G 
Sbjct: 165 CTLKILDFGLARTAGTSFMMVPFVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 224
Query: 312 TL 313
            L
Sbjct: 225 VL 226

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
            +++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 168 SELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 227
Query: 313 L 313
           L
Sbjct: 228 L 228

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 254 CDIRLIDFGSA--TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           C ++++DFG A     +   +  V TR+YRAPEVIL +G+A   D+WS+GCI+ EL  G 
Sbjct: 163 CTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMGYAANVDIWSVGCIMGELVKGC 222
Query: 312 TL 313
            +
Sbjct: 223 VI 224

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 255 DIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITL 313
           +++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G TL
Sbjct: 163 ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTL 222

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
            +++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 164 SELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 223
Query: 313 L 313
           L
Sbjct: 224 L 224

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 255 DIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITL 313
           +++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G TL
Sbjct: 174 ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTL 233

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++D G A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDGGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           C ++++DFG A     +   +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ EL  G
Sbjct: 161 CTLKILDFGLARTASTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGELVKG 219

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++D G A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDRGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 255 DIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITL 313
           +++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G TL
Sbjct: 168 ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTL 227

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 255 DIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITL 313
           +++++DFG A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G TL
Sbjct: 168 ELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTL 227

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 41/61 (67%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DF  A   D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 CELKILDFYLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G 
Sbjct: 163 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 222
Query: 312 TL 313
            L
Sbjct: 223 VL 224

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G 
Sbjct: 163 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 222
Query: 312 TL 313
            L
Sbjct: 223 VL 224

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G 
Sbjct: 163 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 222
Query: 312 TL 313
            L
Sbjct: 223 VL 224

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G 
Sbjct: 164 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 223
Query: 312 TL 313
            L
Sbjct: 224 VL 225

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G 
Sbjct: 163 CTLKILDFGLARTAGTSFMMTPEVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 222
Query: 312 TL 313
            L
Sbjct: 223 VL 224

>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine- Phosphorylation-Regulated Kinase 1a Length = 382

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VA+KIIKN + +   A++E+  L+ + + D   ++  V +   F +  H+C+ FE+L  +
Sbjct: 82  VAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYN 141
Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNXXXX 143
           ++D L+  N+   SL+  R  + Q+  A    +L      + H   +    +  N     
Sbjct: 142 LYDLLRNTNFRGVSLNLTRKFAQQMCTALL--FLATPELSIIHCDLKPENILLCNPKRSA 199
Query: 144 XXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                    I+++DFGS+    +     + +R YR+PE
Sbjct: 200 ---------IKIVDFGSSCQLGQRIYQXIQSRFYRSPE 228

>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine- Phosphorylation-Regulated Kinase 1a Length = 382

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA 315
           I+++DFGS+    +     + +R YR+PEV+L + +    D+WS+GCI+ E++ G  L +
Sbjct: 200 IKIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFS 259

>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX Length = 368

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VA+KIIKN + +   A++E+  L+ + + D   ++  V +   F +  H+C+ FE+L  +
Sbjct: 63  VAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYN 122
Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNXXXX 143
           ++D L+  N+   SL+  R  + Q+  A    +L      + H   +    +  N     
Sbjct: 123 LYDLLRNTNFRGVSLNLTRKFAQQMCTALL--FLATPELSIIHCDLKPENILLCNPKRSA 180
Query: 144 XXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                    I+++DFGS+    +     + +R YR+PE
Sbjct: 181 ---------IKIVDFGSSCQLGQRIYQXIQSRFYRSPE 209

>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX Length = 368

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA 315
           I+++DFGS+    +     + +R YR+PEV+L + +    D+WS+GCI+ E++ G  L +
Sbjct: 181 IKIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFS 240

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/158 (25%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VA+KIIKN + +   A++E+  L+ + + D   ++  V +   F +  H+C+ FE+L  +
Sbjct: 82  VAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLSYN 141
Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNXXXX 143
           ++D L+  N+   SL+  R  + Q+  A    +L      + H   +    +  N     
Sbjct: 142 LYDLLRNTNFRGVSLNLTRKFAQQMCTALL--FLATPELSIIHCDLKPENILLCNPKRXA 199
Query: 144 XXXXXXXCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
                    I+++DFGS+    +     + +R YR+PE
Sbjct: 200 ---------IKIVDFGSSCQLGQRIYQXIQSRFYRSPE 228

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 38/60 (63%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA 315
           I+++DFGS+    +     + +R YR+PEV+L + +    D+WS+GCI+ E++ G  L +
Sbjct: 200 IKIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFS 259

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 201 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 256

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGIT 312
            +++++DFG     D+  +  V+TR YRAPE++L  + + Q  D+WS+GCI+ EL  G T
Sbjct: 162 SELKILDFGLCRHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 221
Query: 313 L 313
           L
Sbjct: 222 L 222

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 164 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 219

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 163 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 218

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 164 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 219

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 162 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 217

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 163 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 218

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 201 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 256

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 156 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 211

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 157 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 212

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 157 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 212

>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1) Catalytic Domain Length = 317

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           D+++ DFG AT   FD E   T+  T +Y APEV+ + G +   D+WS+GCI++ L +G
Sbjct: 180 DVKIGDFGLATKIEFDGERKKTLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVG 238

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 168 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEM 223

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 181 CDLKICDFGLARIADPEHDHTGFLTEXVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 240
Query: 307 L 307
           +
Sbjct: 241 M 241

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 157 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVGCIMGEM 212

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
             ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G 
Sbjct: 163 ATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 222
Query: 312 TL 313
            L
Sbjct: 223 VL 224

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 8/59 (13%)
Query: 254 CDIRLIDFGSA-----TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A     +F  E     V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 163 CTLKILDFGLARTAGTSFMMEPE---VVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 218

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
             ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G 
Sbjct: 163 ATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 222
Query: 312 TL 313
            L
Sbjct: 223 VL 224

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 256 IRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL 313
           ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G  L
Sbjct: 165 LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVL 224

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 163 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 222
Query: 307 L 307
           +
Sbjct: 223 M 223

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 159 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 218
Query: 307 L 307
           +
Sbjct: 219 M 219

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 163 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 222
Query: 307 L 307
           +
Sbjct: 223 M 223

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 8/59 (13%)
Query: 254 CDIRLIDFGSA-----TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           C ++++DFG A     +F  E     V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 163 CTLKILDFGLARTAGTSFMMEPE---VVTRYYRAPEVILGMGYKENVDLWSVGCIMGEM 218

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 161 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 220
Query: 307 L 307
           +
Sbjct: 221 M 221

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 159 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 218
Query: 307 L 307
           +
Sbjct: 219 M 219

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 166 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 225
Query: 307 L 307
           +
Sbjct: 226 M 226

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 167 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 226
Query: 307 L 307
           +
Sbjct: 227 M 227

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 158 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 217
Query: 307 L 307
           +
Sbjct: 218 M 218

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 165 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 224
Query: 307 L 307
           +
Sbjct: 225 M 225

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 169 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 228
Query: 307 L 307
           +
Sbjct: 229 M 229

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 161 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 220
Query: 307 L 307
           +
Sbjct: 221 M 221

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 181 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 240
Query: 307 L 307
           +
Sbjct: 241 M 241

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 165 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 224
Query: 307 L 307
           +
Sbjct: 225 M 225

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 38/61 (62%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 165 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 224
Query: 307 L 307
           +
Sbjct: 225 M 225

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 256 IRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL 313
           I+L DFG A         +++V T  YRAPEV+L+  +A P D+WS+GCI  E++     
Sbjct: 159 IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMF----- 213
Query: 314 MARKTKTKYFYHGKLDWDEKG 334
                + K  + G  D D+ G
Sbjct: 214 -----RRKPLFRGSSDVDQLG 229

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 256 IRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL 313
           I+L DFG A         +++V T  YRAPEV+L+  +A P D+WS+GCI  E++     
Sbjct: 159 IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMF----- 213
Query: 314 MARKTKTKYFYHGKLDWDEKG 334
                + K  + G  D D+ G
Sbjct: 214 -----RRKPLFRGSSDVDQLG 229

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 12/81 (14%)
Query: 256 IRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL 313
           I+L DFG A         +++V T  YRAPEV+L+  +A P D+WS+GCI  E++     
Sbjct: 159 IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMF----- 213
Query: 314 MARKTKTKYFYHGKLDWDEKG 334
                + K  + G  D D+ G
Sbjct: 214 -----RRKPLFRGSSDVDQLG 229

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHHS------TIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H         V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 165 CDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 224
Query: 307 L 307
           +
Sbjct: 225 M 225

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 7/61 (11%)
Query: 254 CDIRLIDFGSATFDDEHHS------TIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D  H         V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 166 CDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 225
Query: 307 L 307
           +
Sbjct: 226 M 226

>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Adp Length = 317

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           D+++ DFG AT   FD E    +  T +Y APEV+ + G +   D+WS+GCI++ L +G
Sbjct: 180 DVKIGDFGLATKIEFDGERKKXLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVG 238

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 256 IRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 165 LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 218

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 256 IRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 165 LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 218

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 256 IRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 165 LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 218

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 256 IRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 165 LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 218

>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With Nms-P937 Length = 311

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++++ DFG AT   +D E   T+  T +Y APEV+ + G +   DVWSIGCI++ L +G
Sbjct: 155 EVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG 213

>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 311

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++++ DFG AT   +D E   T+  T +Y APEV+ + G +   DVWSIGCI++ L +G
Sbjct: 155 EVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG 213

>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 315

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++++ DFG AT   +D E   T+  T +Y APEV+ + G +   DVWSIGCI++ L +G
Sbjct: 159 EVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG 217

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Query: 256 IRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+
Sbjct: 158 LKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEM 211

>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain. Length = 317

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           D+++ DFG AT   FD E    +  T +Y APEV+ + G +   D+WS+GCI++ L +G
Sbjct: 180 DVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVG 238

>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like Kinase 1 (Plk1) Catalytic Domain In Complex With Compound 902 Length = 301

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           D+++ DFG AT   FD E    +  T +Y APEV+ + G +   D+WS+GCI++ L +G
Sbjct: 164 DVKIGDFGLATKIEFDGERKKDLCGTPNYIAPEVLCKKGHSFEVDIWSLGCILYTLLVG 222

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 14/79 (17%)
Query: 256 IRLIDFGSA--------TFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFE 306
           ++L DFG A         +DDE     V+TR YRAPE+++ ++ + +  DVW+IGC++ E
Sbjct: 163 VKLCDFGFARTLAAPGEVYDDE-----VATRWYRAPELLVGDVKYGKAVDVWAIGCLVTE 217
Query: 307 LYLGITLMARKTKTKYFYH 325
           +++G  L    +     YH
Sbjct: 218 MFMGEPLFPGDSDIDQLYH 236

>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific Kinase 2 (Srpk2) Bound To Purvalanol B Length = 389

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 35/55 (63%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +++ D G+A +  +H +  + TR YR+ EV++  G++ P D+WS  C+ FEL  G
Sbjct: 227 VKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATG 281

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 256 IRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLGI 311
           I+L DFG A   T   +++   V+TR YR+PE+++ +  +  P DVW+IGC+  EL  G+
Sbjct: 141 IKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGV 200
Query: 312 TLMARKTKTKYFY 324
            L   K+     Y
Sbjct: 201 PLWPGKSDVDQLY 213

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
             ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+G I+ E+  G 
Sbjct: 163 ATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGG 222
Query: 312 TL 313
            L
Sbjct: 223 VL 224

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
             ++++DFG A         +  V TR+YRAPEVIL +G+ +  D+WS+G I+ E+  G 
Sbjct: 163 ATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGVIMGEMIKGG 222
Query: 312 TL 313
            L
Sbjct: 223 VL 224

>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A Benzolactam-Derived Inhibitor Length = 333

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++++ DFG AT   +D E    +  T +Y APEV+ + G +   DVWSIGCI++ L +G
Sbjct: 177 EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG 235

>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like Kinase 1 Length = 335

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++++ DFG AT   +D E    +  T +Y APEV+ + G +   DVWSIGCI++ L +G
Sbjct: 179 EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG 237

>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536 Length = 294

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++++ DFG AT   +D E    +  T +Y APEV+ + G +   DVWSIGCI++ L +G
Sbjct: 153 EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG 211

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 255 DIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFEL 307
           D+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E+
Sbjct: 162 DLKIXDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM 221

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 255 DIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFEL 307
           D+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E+
Sbjct: 162 DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM 221

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 255 DIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFEL 307
           D+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E+
Sbjct: 164 DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM 223

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 255 DIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFEL 307
           D+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E+
Sbjct: 166 DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM 225

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 255 DIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFEL 307
           D+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E+
Sbjct: 162 DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM 221

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 255 DIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFEL 307
           D+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E+
Sbjct: 166 DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM 225

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 7/60 (11%)
Query: 255 DIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFEL 307
           D+++ DFG A   D  H      +  V+TR YRAPE++L   G+ +  D+WS+GCI+ E+
Sbjct: 182 DLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM 241

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 14/70 (20%)
Query: 254 CDIRLIDFGSATFDDEHHS-------------TIVSTRHYRAPEVILELG-WAQPCDVWS 299
           CD+++ DFG A   DE  +               V+TR YRAPEV+L    +++  DVWS
Sbjct: 149 CDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWS 208
Query: 300 IGCIIFELYL 309
            GCI+ EL+L
Sbjct: 209 CGCILAELFL 218

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 14/70 (20%)
Query: 254 CDIRLIDFGSATFDDEHH-------------STIVSTRHYRAPEVILELG-WAQPCDVWS 299
           CD+++ DFG A   DE               +  V+TR YRAPEV+L    +++  DVWS
Sbjct: 149 CDLKVCDFGLARIIDESAADNSEPTGQQSGMTEXVATRWYRAPEVMLTSAKYSRAMDVWS 208
Query: 300 IGCIIFELYL 309
            GCI+ EL+L
Sbjct: 209 CGCILAELFL 218

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 256 IRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY 308
           ++L DFG A         + +V T  YRAPEV+L+  +A P D+WS+GCI  E++
Sbjct: 159 VKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMF 213

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 14/70 (20%)
Query: 254 CDIRLIDFGSATFDDEHH-------------STIVSTRHYRAPEVILELG-WAQPCDVWS 299
           CD+++ DFG A   DE               +  V+TR YRAPEV+L    +++  DVWS
Sbjct: 149 CDLKVCDFGLARIIDESAADNSEPTGQQSGMTEYVATRWYRAPEVMLTSAKYSRAMDVWS 208
Query: 300 IGCIIFELYL 309
            GCI+ EL+L
Sbjct: 209 CGCILAELFL 218

>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum In Complex With Indirubin E804 Length = 383

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVILELGWAQPC-DVWSIGCIIFELYLGIT 312
           ++L DFGSA      E     + +R YRAPE++L      P  D+WSIGC+  EL LG  
Sbjct: 181 LKLCDFGSAKKLIPSEPSVAXICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKP 240
Query: 313 LMARKT 318
           L + +T
Sbjct: 241 LFSGET 246

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY 308
           ++L DFG A       +   +V T  YRAPEV+L+  +A P D+WS+GCI  E++
Sbjct: 151 VKLADFGLARIYSYQMALFPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMF 205

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY 308
           ++L DFG A       +   +V T  YRAPEV+L+  +A P D+WS+GCI  E++
Sbjct: 151 VKLADFGLARIYSYQMALAPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMF 205

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY 308
           ++L DFG A       +   +V T  YRAPEV+L+  +A P D+WS+GCI  E++
Sbjct: 151 VKLADFGLARIYSYQMALDPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMF 205

>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1 In With Amp-Pnp Length = 325

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +I++IDFG A     D++   T   T HY APE++ + G+ + CD+WS+G I++ +  G
Sbjct: 147 EIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSG 205

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 254 CDIRLIDFGSA----TFDDEHH---STIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIF 305
           C++++ DFG A    T   EH    +  V+TR YRAPE++L L  + Q  D+WS+GCI  
Sbjct: 195 CELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFG 254
Query: 306 EL 307
           E+
Sbjct: 255 EM 256

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 196 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 253

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 174 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 231

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 174 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 231

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 181 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 238

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 170 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 227

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 219

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 196 LKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 253

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 256 IRLIDFGSATF--DDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLGIT 312
           ++LIDFGSA      E + + + +R+YRAPE+I     +    D+WS GC++ EL  G  
Sbjct: 181 LKLIDFGSAKILIAGEPNVSXICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQP 240
Query: 313 L 313
           L
Sbjct: 241 L 241

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 219

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 8/62 (12%)
Query: 254 CDIRLIDFGSA----TFDDEHH---STIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIF 305
           C++++ DFG A    T   EH    +  V+TR YRAPE++L L  + Q  D+WS+GCI  
Sbjct: 196 CELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFG 255
Query: 306 EL 307
           E+
Sbjct: 256 EM 257

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 163 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 220

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 219

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 166 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 223

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 219

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 190 LKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 247

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 198 LKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 255

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 241 LKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 298

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 167 LKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 224

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 200 LKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 257

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 175 LKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 232

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 219

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 219

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E + + + +R+YRAPE+I     +    DVWS GC++ EL LG
Sbjct: 162 LKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG 219

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFGSA      E +   + +R+YRAPE+I     +    D+WS+GCI  E+ LG
Sbjct: 171 LKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLG 228

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 256 IRLIDFG-SATFDDEHH-STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I+++DFG SA F+++      + T +Y APEV L   + + CDVWSIG I+F L  G
Sbjct: 178 IKIVDFGLSAVFENQKKMKERLGTAYYIAPEV-LRKKYDEKCDVWSIGVILFILLAG 233

>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase Length = 278

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +I++ DFG AT      E H T+  T +Y +PE+          DVWS+GC+ + L +G
Sbjct: 150 NIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIG 208

>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound Length = 279

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 255 DIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +++L DFG A     D     T V T +Y +PE +  + + +  D+WS+GC+++EL
Sbjct: 154 NVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209

>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs Resolution) Length = 362

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKL 224
            DLI+KMLE+ P  RIS  +ALRHP+F+ L
Sbjct: 294 LDLIAKMLEFNPQRRISTEQALRHPYFESL 323

>pdb|3PG1|A Chain A, Map Kinase Lmampk10 From Leishmania Major (1.95 Angs Resolution) Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 255 DIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELY 308
           DI + DF  A  D  D + +  V+ R YRAPE++++  G+ +  D+WS GC++ E++
Sbjct: 172 DITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMF 228

>pdb|2F7E|E Chain E, Pka Complexed With (S)-2-(1h-Indol-3-Yl)-1-(5-Isoquinolin-6- Yl-Pyridin-3-Yloxymethyl-Etylamine Length = 351

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A        T+  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With Sb203580 Length = 362

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/30 (60%), Positives = 23/30 (76%)
Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKL 224
            DLI+KMLE+ P  RIS  +ALRHP+F+ L
Sbjct: 294 LDLIAKMLEFNPQRRISTEQALRHPYFESL 323

>pdb|3UIB|A Chain A, Map Kinase Lmampk10 From Leishmania Major In Complex With Sb203580 Length = 362

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 3/57 (5%)
Query: 255 DIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELY 308
           DI + DF  A  D  D + +  V+ R YRAPE++++  G+ +  D+WS GC++ E++
Sbjct: 172 DITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMF 228

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 254 CDIRLIDFGSAT--FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           CDI++IDFG +T    +      + T +Y APEV L   + + CDVWS G I++ L  G
Sbjct: 161 CDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVWSAGVILYILLSG 218

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            ++ V T  Y +PE++ E   ++  D+W++GCII++L  G
Sbjct: 171 IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSASKSSDLWALGCIIYQLVAG 230
Query: 311 I 311
           +
Sbjct: 231 L 231

>pdb|2UZT|A Chain A, Pka Structures Of Akt, Indazole-Pyridine Inhibitors Length = 336

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A        T+  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 166 IQVTDFGFAKRVKGRTWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 220

>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent Protein Kinase With Unphosphorylated Activation Loop Length = 371

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A        T+  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 201 IQVTDFGFAKRVKGATWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 255

>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662 Length = 279

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 255 DIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +++L DFG A     D++     V T +Y +PE +  + + +  D+WS+GC+++EL
Sbjct: 154 NVKLGDFGLARILNHDEDFAKEFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 254 CDIRLIDFGSATFDDEHHSTI--VSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           CDI++IDFG +T   ++      + T +Y APEV L   + + CDVWS G I++ L  G
Sbjct: 161 CDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVWSAGVILYILLSG 218

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 254 CDIRLIDFGSATFDDEHHSTI--VSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           CDI++IDFG +T   ++      + T +Y APEV L   + + CDVWS G I++ L  G
Sbjct: 161 CDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVWSAGVILYILLSG 218

>pdb|2F2U|A Chain A, Crystal Structure Of The Rho-Kinase Kinase Domain Length = 402

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 256 IRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELG----WAQPCDVWSIGCIIFEL 307
           ++L DFG+    DE    H  T V T  Y +PEV+   G    + + CD WS+G  +FE+
Sbjct: 213 LKLADFGTCMKMDETGMVHCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLFEM 272
Query: 308 YLGIT 312
            +G T
Sbjct: 273 LVGDT 277

>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7 Length = 311

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            ++ V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 168 IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 227
Query: 311 I 311
           +
Sbjct: 228 L 228

>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent Kinase- 1 (Pdk-1)catalytic Domain Bound To A Dibenzonaphthyridine Inhibitor Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            ++ V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 172 IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 231
Query: 311 I 311
           +
Sbjct: 232 L 232

>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And Regulatory (Ri{alpha}) Subunits Of Pka Length = 350

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLAGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 259 IDFGSATFDDEHH--STIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           I+  +  FDD+    +  V+TR YRAPE++L    + +  D+WS+GCI+ E+  G
Sbjct: 173 INENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCG 227

>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain Length = 310

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 169 IQITDFGTAKVLSPESKQARANAFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228
Query: 311 I 311
           +
Sbjct: 229 L 229

>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a, L173m, Q181k) With Compound 18 Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl) Amide Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein Kinase A (Pka) Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IKVTDFGLAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4- Chlorophenyl)-1-(7h-Pyrrolo(2, 3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h- Purin-6-yl)-benzyl)-amine Length = 351

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IKVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand Length = 279

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 255 DIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +++L DFG A     D       V T +Y +PE +  + + +  D+WS+GC+++EL
Sbjct: 154 NVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209

>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 256 IRLIDFG---SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG     T +    ST+V T ++ APEV+    +    D+WS+G +  E+  G
Sbjct: 156 VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEG 213

>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric Activator Ps171 Bound To The Pif-Pocket Length = 311

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 171 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSAXKSSDLWALGCIIYQLVAG 230
Query: 311 I 311
           +
Sbjct: 231 L 231

>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1 Length = 297

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 256 IRLIDFG---SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG     T +    ST+V T ++ APEV+    +    D+WS+G +  E+  G
Sbjct: 155 VKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEG 212

>pdb|1J3H|A Chain A, Crystal Structure Of Apoenzyme Camp-Dependent Protein Kinase Catalytic Subunit Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLXGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 147 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 206
Query: 311 I 311
           +
Sbjct: 207 L 207

>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3- Phosphoinositide Dependent Kinase (Pdk1) Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 171 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230
Query: 311 I 311
           +
Sbjct: 231 L 231

>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With Inhibitor Jnj- 7706621 Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1Z5M|A Chain A, Crystal Structure Of N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl) Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2- Dimethylpropanediamide Complexed With Human Pdk1 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 146 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 205
Query: 311 I 311
           +
Sbjct: 206 L 206

>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Bim-3 Length = 286

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 148 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 207
Query: 311 I 311
           +
Sbjct: 208 L 208

>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 168 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 227
Query: 311 I 311
           +
Sbjct: 228 L 228

>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 169 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228
Query: 311 I 311
           +
Sbjct: 229 L 229

>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With Y- 27632 Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632 Length = 350

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IKVADFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With Ly333531 Length = 310

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 169 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228
Query: 311 I 311
           +
Sbjct: 229 L 229

>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1 Catalytic Domain Length = 289

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 149 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 208
Query: 311 I 311
           +
Sbjct: 209 L 209

>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through Fragment-Based Lead Discovery Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 171 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230
Query: 311 I 311
           +
Sbjct: 231 L 231

>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A Pyrazoloquinazoline Inhibitor Length = 309

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 169 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228
Query: 311 I 311
           +
Sbjct: 229 L 229

>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i Length = 312

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 172 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 231
Query: 311 I 311
           +
Sbjct: 232 L 232

>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In Complex With Compound 9 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 171 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230
Query: 311 I 311
           +
Sbjct: 231 L 231

>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain In Complex With Atp Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 171 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 230
Query: 311 I 311
           +
Sbjct: 231 L 231

>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead Compound Length = 292

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 153 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 212
Query: 311 I 311
           +
Sbjct: 213 L 213

>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment Inhibitor 1f8 Length = 316

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 176 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 235
Query: 311 I 311
           +
Sbjct: 236 L 236

>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx Length = 314

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            +  V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 174 IQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 233
Query: 311 I 311
           +
Sbjct: 234 L 234

>pdb|1L3R|E Chain E, Crystal Structure Of A Transition State Mimic Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1APM|E Chain E, 2.0 Angstrom Refined Crystal Structure Of The Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With A Peptide Inhibitor And Detergent Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1Q8W|A Chain A, The Catalytic Subunit Of Camp-Dependent Protein Kinase In Complex With Rho-Kinase Inhibitor Fasudil (Ha-1077) Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|4DFX|E Chain E, Crystal Structure Of Myristoylated K7c Catalytic Subunit Of Camp- Dependent Protein Kinase In Complex With Sp20 And Amp-Pnp Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1CTP|E Chain E, Structure Of The Mammalian Catalytic Subunit Of Camp-Dependent Protein Kinase And An Inhibitor Peptide Displays An Open Conformation Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3AGM|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-670 Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|1STC|E Chain E, Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With Staurosporine Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1FMO|E Chain E, Crystal Structure Of A Polyhistidine-Tagged Recombinant Catalytic Subunit Of Camp-Dependent Protein Kinase Complexed With The Peptide Inhibitor Pki(5-24) And Adenosine Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3AGL|A Chain A, Complex Of Pka With The Bisubstrate Protein Kinase Inhibitor Arc-1039 Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|2QCS|A Chain A, A Complex Structure Between The Catalytic And Regulatory Subunit Of Protein Kinase A That Represents The Inhibited State Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1BKX|A Chain A, A Binary Complex Of The Catalytic Subunit Of Camp-Dependent Protein Kinase And Adenosine Further Defines Conformational Flexibility Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2ERZ|E Chain E, Crystal Structure Of C-amp Dependent Kinase (pka) Bound To Hydroxyfasudil Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|1SVH|A Chain A, Crystal Structure Of Protein Kinase A In Complex With Azepane Derivative 8 Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1Q24|A Chain A, Pka Double Mutant Model Of Pkb In Complex With Mgatp Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2JDS|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With A- 443654 Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|2C1A|A Chain A, Structure Of Camp-Dependent Protein Kinase Complexed With Isoquinoline-5-Sulfonic Acid (2-(2-(4-Chlorobenzyloxy) Ethylamino)ethyl)amide Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|1XH7|A Chain A, Crystal Structures Of Protein Kinase B Selective Inhibitors In Complex With Protein Kinase A And Mutants Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3QAL|E Chain E, Crystal Structure Of Arg280ala Mutant Of Catalytic Subunit Of Camp- Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1CDK|A Chain A, Camp-Dependent Protein Kinase Catalytic Subunit (E.C.2.7.1.37) (Protein Kinase A) Complexed With Protein Kinase Inhibitor Peptide Fragment 5-24 (Pki(5-24) Isoelectric Variant Ca) And Mn2+ Adenylyl Imidodiphosphate (Mnamp-Pnp) At Ph 5.6 And 7c And 4c Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1JBP|E Chain E, Crystal Structure Of The Catalytic Subunit Of Camp- Dependent Protein Kinase Complexed With A Substrate Peptide, Adp And Detergent Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3DND|A Chain A, Camp-Dependent Protein Kinase Pka Catalytic Subunit With Pki-5-24 Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|2QUR|A Chain A, Crystal Structure Of F327aK285P MUTANT OF CAMP-Dependent Protein Kinase Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1YDT|E Chain E, Structure Of Camp-Dependent Protein Kinase, Alpha-Catalytic Subunit In Complex With H89 Protein Kinase Inhibitor N-[2- (4-Bromocinnamylamino)ethyl]-5-Isoquinoline Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered N- Terminal Helix Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGLAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3NX8|A Chain A, Human Camp Dependent Protein Kinase In Complex With Phenol Length = 351

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 181 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 235

>pdb|1CMK|E Chain E, Crystal Structures Of The Myristylated Catalytic Subunit Of Camp- Dependent Protein Kinase Reveal Open And Closed Conformations Length = 350

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>pdb|4DG3|E Chain E, Crystal Structure Of R336a Mutant Of Camp-dependent Protein Kinase With Unphosphorylated Turn Motif Length = 371

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 201 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 255

>pdb|4AE6|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit Calpha 2 Length = 343

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 173 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 227

>pdb|3PVB|A Chain A, Crystal Structure Of (73-244)ria:c Holoenzyme Of Camp-Dependent Protein Kinase Length = 345

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 175 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 229

>pdb|3MVJ|A Chain A, Human Cyclic Amp-Dependent Protein Kinase Pka Inhibitor Complex Length = 371

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 201 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 255

>pdb|4AE9|A Chain A, Structure And Function Of The Human Sperm-specific Isoform Of Protein Kinase A (pka) Catalytic Subunit C Alpha 2 Length = 343

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 173 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 227

>pdb|2GU8|A Chain A, Discovery Of 2-pyrimidyl-5-amidothiophenes As Novel And Potent Inhibitors For Akt: Synthesis And Sar Studies Length = 337

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 167 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAG 221

>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii, 25.M01780 Or Tgme49_007820 Length = 458

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 255 DIRLIDFGSATFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFEL 307
           D+ L+ F          +  V TR YRAPE+IL +  + +  DVWSIGCI  EL
Sbjct: 224 DMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAEL 277

>pdb|1KWP|A Chain A, Crystal Structure Of Mapkap2 Length = 400

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A     H+S  T   T +Y APEV+    + + CD+WS+G I++ L  G
Sbjct: 203 LKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 259

>pdb|2ONL|C Chain C, Crystal Structure Of The P38a-Mapkap Kinase 2 Heterodimer Length = 406

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A     H+S  T   T +Y APEV+    + + CD+WS+G I++ L  G
Sbjct: 209 LKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 265

>pdb|2OZA|A Chain A, Structure Of P38alpha Complex Length = 356

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A     H+S  T   T +Y APEV+    + + CD+WS+G I++ L  G
Sbjct: 159 LKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 215

>pdb|3O7L|B Chain B, Crystal Structure Of Phospholamban (1-19):pka C-Subunit:amp-Pnp:mg2+ Complex Length = 350

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+I+  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIIISKGYNKAVDWWALGVLIYEMAAG 234

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSATFDDEHHSTIVS---TRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I+L DFG +    +H     S   T  Y APEV+   G  Q  D WS G ++FE+  G
Sbjct: 165 IKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 222

>pdb|3R2Y|A Chain A, Mk2 Kinase Bound To Compound 1 Length = 319

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A     H+S  T   T +Y APEV+    + + CD+WS+G I++ L  G
Sbjct: 158 LKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 214

>pdb|3GOK|A Chain A, Binding Site Mapping Of Protein Ligands Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A     H+S  T   T +Y APEV+    + + CD+WS+G I++ L  G
Sbjct: 173 LKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 229

>pdb|3FPM|A Chain A, Crystal Structure Of A Squarate Inhibitor Bound To Mapkap Kinase-2 Length = 325

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A     H+S  T   T +Y APEV+    + + CD+WS+G I++ L  G
Sbjct: 164 LKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 220

>pdb|2PZY|A Chain A, Structure Of Mk2 Complexed With Compound 76 Length = 324

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A     H+S  T   T +Y APEV+    + + CD+WS+G I++ L  G
Sbjct: 163 LKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 219

>pdb|2P3G|X Chain X, Crystal Structure Of A Pyrrolopyridine Inhibitor Bound To Mapkap Kinase-2 Length = 327

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A     H+S  T   T +Y APEV+    + + CD+WS+G I++ L  G
Sbjct: 159 LKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 215

>pdb|3R2B|A Chain A, Mk2 Kinase Bound To Compound 5b Length = 318

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A     H+S  T   T +Y APEV+    + + CD+WS+G I++ L  G
Sbjct: 157 LKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 213

>pdb|2JBO|A Chain A, Protein Kinase Mk2 In Complex With An Inhibitor (Crystal Form-1, Soaking) Length = 326

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 256 IRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG A     H+S  T   T +Y APEV+    + + CD+WS+G I++ L  G
Sbjct: 165 LKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 221

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSATFDDEHHSTIVS---TRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I+L DFG +    +H     S   T  Y APEV+   G  Q  D WS G ++FE+  G
Sbjct: 166 IKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 223

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 256 IRLIDFGSATFDDEHHSTIVS---TRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I+L DFG +    +H     S   T  Y APEV+   G  Q  D WS G ++FE+  G
Sbjct: 165 IKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 222

>pdb|2WNT|A Chain A, Crystal Structure Of The Human Ribosomal Protein S6 Kinase Length = 330

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 256 IRLIDFGSATFDDEHHSTIVS---TRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT 312
           +R+ DFG A      +  +++   T ++ APEV+   G+ + CD+WS+G +++ +  G T
Sbjct: 164 LRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYT 223
Query: 313 LMA 315
             A
Sbjct: 224 PFA 226

>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase Mst4 In Complex With An Quinazolin Length = 301

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 255 DIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           D++L DFG A   T      +T V T  + APEVI +  +    D+WS+G    EL  G
Sbjct: 158 DVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKG 216

>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 (rsk2) Length = 342

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 256 IRLIDFGSATFDDEHHSTIVS---TRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT 312
           IR+ DFG A      +  +++   T ++ APEV+   G+   CD+WS+G +++ +  G T
Sbjct: 159 IRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYT 218
Query: 313 LMA 315
             A
Sbjct: 219 PFA 221

>pdb|3Q5I|A Chain A, Crystal Structure Of Pbanka_031420 Length = 504

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +I+++DFG ++F   D      + T +Y APEV L+  + + CDVWS G I++ L  G
Sbjct: 187 NIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEV-LKKKYNEKCDVWSCGVIMYILLCG 243

>pdb|1SYK|A Chain A, Crystal Structure Of E230q Mutant Of Camp-Dependent Protein Kinase Reveals Unexpected Apoenzyme Conformation Length = 350

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A         +  T  Y APE+IL  G+ +  D W++G +I+++  G
Sbjct: 180 IQVTDFGFAKRVKGRTWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYQMAAG 234

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 255 DIRLIDFG-SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +I+L DFG S    D   ++ V TR Y APE +    ++   D+WS+G  + EL +G
Sbjct: 153 EIKLCDFGVSGQLIDSMANSFVGTRSYMAPERLQGTHYSVQSDIWSMGLSLVELAVG 209

>pdb|3RNY|A Chain A, Crystal Structure Of Human Rsk1 C-Terminal Kinase Domain Length = 346

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query: 256 IRLIDFGSATFDDEHHSTIVS---TRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT 312
           +R+ DFG A      +  +++   T ++ APEV+   G+ + CD+WS+G +++ +  G T
Sbjct: 164 LRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLKRQGYDEGCDIWSLGILLYTMLAGYT 223
Query: 313 LMA 315
             A
Sbjct: 224 PFA 226

>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma Gondii, Tgme49_018720 Length = 285

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 256 IRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++IDFG A     DEH +    T  Y APEV  +      CD+WS G +++ L  G
Sbjct: 166 IKIIDFGLAELFKSDEHSTNAAGTALYMAPEV-FKRDVTFKCDIWSAGVVMYFLLTG 221

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	351
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	2e-65
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	6e-47
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	1e-12
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	4e-64
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	2e-44
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	3e-12
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	6e-62
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	5e-40
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	1e-09
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	3e-53
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	6e-31
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	1e-09
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	2e-52
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	5e-31
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	2e-11
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	4e-47
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	8e-29
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	2e-11
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	3e-46
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	4e-08
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-13
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	3e-07
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	2e-12
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	3e-07
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-12
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	8e-06
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	6e-12
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	7e-09
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	3e-04
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	6e-12
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	8e-06
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	9e-12
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	2e-06
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	1e-11
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	2e-06
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-11
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	1e-05
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	3e-11
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	3e-06
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	4e-11
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	2e-06
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	5e-11
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	1e-08
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	5e-11
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	3e-06
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	6e-11
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	4e-09
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	5e-04
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	7e-11
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	4e-06
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	1e-10
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	4e-09
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	5e-04
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-10
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	2e-07
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-10
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-07
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	3e-10
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	6e-08
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	4e-10
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	7e-08
2a19_B	284	Interferon-induced, double-stranded RNA-activated	6e-10
2a19_B	284	Interferon-induced, double-stranded RNA-activated	5e-09
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	8e-10
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	3e-07
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	3e-05
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-09
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-06
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	2e-09
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	3e-09
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-09
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	2e-08
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-09
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	4e-09
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	3e-09
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	4e-09
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	4e-09
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	5e-08
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	3e-06
3niz_A	311	Rhodanese family protein; structural genomics, str	4e-09
3niz_A	311	Rhodanese family protein; structural genomics, str	2e-06
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	4e-09
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	1e-07
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	5e-09
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	6e-08
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	6e-09
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	6e-08
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	6e-09
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	7e-09
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	1e-08
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	7e-09
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	6e-08
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	8e-09
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	2e-06
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	8e-09
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	3e-06
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	8e-09
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	4e-07
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	1e-08
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	4e-06
3o0g_A	292	Cell division protein kinase 5; kinase activator c	1e-08
3o0g_A	292	Cell division protein kinase 5; kinase activator c	7e-06
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-08
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	1e-06
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-08
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	1e-08
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	1e-08
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-07
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-08
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	2e-07
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	1e-08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	4e-08
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	3e-04
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-08
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	8e-04
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-08
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	1e-07
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	1e-08
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-08
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	1e-08
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	1e-04
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	2e-08
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	6e-07
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-08
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	2e-06
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-08
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-06
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	6e-06
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	2e-08
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	5e-05
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	2e-08
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	3e-08
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-08
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	5e-08
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-08
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-07
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-08
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	5e-06
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-08
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-07
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	3e-08
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	2e-06
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	3e-08
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	7e-08
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	3e-08
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	8e-06
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	3e-08
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	5e-06
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	7e-06
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	3e-08
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	1e-06
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	4e-08
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	4e-07
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	4e-08
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	6e-05
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	4e-08
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	1e-07
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	4e-08
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	1e-07
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	4e-08
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	5e-07
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	5e-08
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	3e-06
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	2e-05
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	6e-08
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	6e-07
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	6e-08
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	1e-07
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	7e-08
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	6e-07
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	7e-08
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	3e-07
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	7e-08
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	2e-05
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	8e-08
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	3e-06
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	8e-08
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-07
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	9e-08
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	1e-07
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-07
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-07
3bhy_A	283	Death-associated protein kinase 3; death associate	9e-07
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-07
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-07
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-07
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	7e-06
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-07
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	1e-06
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-07
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	8e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	3e-07
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	2e-06
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	3e-07
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	4e-07
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	1e-06
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	5e-07
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	2e-04
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	5e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	6e-07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	5e-07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	5e-06
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	6e-07
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-06
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	6e-07
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-06
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	8e-05
3rp9_A	458	Mitogen-activated protein kinase; structural genom	8e-07
3rp9_A	458	Mitogen-activated protein kinase; structural genom	8e-07
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-06
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	3e-06
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	4e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	4e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	6e-05
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	4e-06
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	4e-06
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	5e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	6e-06
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	4e-05
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	6e-06
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	5e-05
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	6e-06
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	6e-06
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	8e-06
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	9e-06
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	8e-06
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	8e-06
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	1e-04
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	8e-06
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-05
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-05
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-05
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	6e-05
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	2e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-05
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	2e-04
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	3e-05
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	6e-05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-05
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-05
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	3e-05
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	3e-05
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	3e-05
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	4e-05
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	4e-05
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	4e-05
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-04
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	4e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	5e-05
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-04
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	8e-05
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	9e-05
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	9e-05
2dyl_A	318	Dual specificity mitogen-activated protein kinase	9e-05
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-04
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	1e-04
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	1e-04
3fme_A	290	Dual specificity mitogen-activated protein kinase;	2e-04
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-04
3aln_A	327	Dual specificity mitogen-activated protein kinase;	2e-04
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-04
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	3e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	3e-04
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	4e-04
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	4e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	7e-04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	7e-04
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	8e-04

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score =  209 bits (533), Expect = 2e-65
 Identities = 83/170 (48%), Positives = 112/170 (65%), Gaps = 20/170 (11%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VA+KI+KNV++Y EAAR EI  L+ +   DPN    CV+ML+WF++HGH+CI FE+LGLS
Sbjct: 43  VAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELLGLS 102

Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRH--------MSYQL 131
            +DF+KEN +LP+ LD +R M+YQ+  +      N         + H        +  Q 
Sbjct: 103 TYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNK--------LTHTDLKPENILFVQS 154

Query: 132 IYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
            Y   YN K KR+ R +   DI+++DFGSAT+DDEHHST+VSTRHYRAPE
Sbjct: 155 DYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPE 204

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score =  161 bits (409), Expect = 6e-47
 Identities = 69/125 (55%), Positives = 82/125 (65%), Gaps = 24/125 (19%)

Query: 249 RRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY 308
           R +   DI+++DFGSAT+DDEHHST+VSTRHYRAPEVIL LGW+QPCDVWSIGCI+ E Y
Sbjct: 169 RTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYY 228

Query: 309 LGITL-----------------------MARK-TKTKYFYHGKLDWDEKGTAGRYVRENC 344
           LG T+                       M +K  K KYF+H +LDWDE  +AGRYV   C
Sbjct: 229 LGFTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRAC 288

Query: 345 KPLHH 349
           KPL  
Sbjct: 289 KPLKE 293

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score = 67.3 bits (165), Expect = 1e-12
 Identities = 29/48 (60%), Positives = 38/48 (79%)

Query: 181 ERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV 228
           + +M S D EH +LFDLI KMLEY+P++RI+L EAL+HPFFD L  S+
Sbjct: 292 KEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDLLKKSI 339

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score =  206 bits (526), Expect = 4e-64
 Identities = 93/172 (54%), Positives = 112/172 (65%), Gaps = 20/172 (11%)

Query: 22  SVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG 81
           S VALKII+NV KYREAARLEIN L+KI EKD   + LCV M DWF++HGHMCIAFE+LG
Sbjct: 46  SQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELLG 105

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYA----KENNYLPYSLDQVRH--------MSY 129
            + F+FLKENN+ PY L  VRHM+YQL +A     EN         + H        +  
Sbjct: 106 KNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQ--------LTHTDLKPENILFV 157

Query: 130 QLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
              +   YN  K  E + V+   IR+ DFGSATFD EHH+TIV+TRHYR PE
Sbjct: 158 NSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPE 209

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score =  155 bits (393), Expect = 2e-44
 Identities = 71/140 (50%), Positives = 85/140 (60%), Gaps = 24/140 (17%)

Query: 233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWA 292
            ++ + + +   S   + V+   IR+ DFGSATFD EHH+TIV+TRHYR PEVILELGWA
Sbjct: 158 NSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWA 217

Query: 293 QPCDVWSIGCIIFELYLGITL-----------------------MARK-TKTKYFYHGKL 328
           QPCDVWSIGCI+FE Y G TL                       M  +  K KYFY G L
Sbjct: 218 QPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGL 277

Query: 329 DWDEKGTAGRYVRENCKPLH 348
            WDE  + GRYV+ENCKPL 
Sbjct: 278 VWDENSSDGRYVKENCKPLK 297

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score = 65.8 bits (161), Expect = 3e-12
 Identities = 28/80 (35%), Positives = 43/80 (53%)

Query: 159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRH 218
           G   +D+          + +  + YM  D  EH QLFDL+ +MLE++P++RI+L+EAL H
Sbjct: 275 GGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLH 334

Query: 219 PFFDKLPSSVRVHAQTQADR 238
           PFF  L    R    ++   
Sbjct: 335 PFFAGLTPEERSFHTSRNPS 354

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score =  201 bits (512), Expect = 6e-62
 Identities = 52/174 (29%), Positives = 91/174 (52%), Gaps = 23/174 (13%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
            A+K+++N++KY  +A++E + L+KI   D N  +  VK    F Y+ HMC+ FE LG S
Sbjct: 63  YAVKVVRNIKKYTRSAKIEADILKKIQNDDINNNN-IVKYHGKFMYYDHMCLIFEPLGPS 121

Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLIYA--------------KENNYLPYSLDQVRHMSY 129
           +++ +  NNY  + ++ ++    +++ A              K  N L      +    +
Sbjct: 122 LYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENIL------LDDPYF 175

Query: 130 QLIY--AVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           +          + KK ++ R +   I+LIDFG ATF  ++H +I++TR YRAPE
Sbjct: 176 EKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPE 229

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score =  143 bits (363), Expect = 5e-40
 Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 31/142 (21%)

Query: 238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDV 297
           R ++    + + R +   I+LIDFG ATF  ++H +I++TR YRAPEVIL LGW    D+
Sbjct: 183 RRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDM 242

Query: 298 WSIGCIIFELYLGITL---------------------------MARKTKTKYFYHG--KL 328
           WS GC++ ELY G  L                             +   +KY      KL
Sbjct: 243 WSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKL 302

Query: 329 DWDEKGTAGRYVR--ENCKPLH 348
            W E  ++   ++  + C PL+
Sbjct: 303 AWPENASSINSIKHVKKCLPLY 324

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 172 VSTRHYRAPERYM--ASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFD 222
            S+ +     +         +H    D +  +L+ +P+ R S +E L+H F +
Sbjct: 308 ASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE 360

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score =  179 bits (455), Expect = 3e-53
 Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 17/164 (10%)

Query: 21  DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
              VA+KIIKN + +   A++E+  L+ + + D   ++  V +   F +  H+C+ FE+L
Sbjct: 79  QEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEML 138

Query: 81  GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK 140
             +++D L+  N+   SL+  R  + Q+  A         L  +      +I+  D    
Sbjct: 139 SYNLYDLLRNTNFRGVSLNLTRKFAQQMCTA---------LLFLATPELSIIHC-DL--- 185

Query: 141 KKRE---VRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
            K E   +   +R  I+++DFGS+    +     + +R YR+PE
Sbjct: 186 -KPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPE 228

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score =  119 bits (301), Expect = 6e-31
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 24/124 (19%)

Query: 252 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           +R  I+++DFGS+    +     + +R YR+PEV+L + +    D+WS+GCI+ E++ G 
Sbjct: 196 KRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGE 255

Query: 312 TL-----------------------MARK-TKTKYFYHGKLDWDEKGTAGRYVRENCKPL 347
            L                       +  +  K + F+    D        +  +   KP 
Sbjct: 256 PLFSGANEVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKPP 315

Query: 348 HHSP 351
               
Sbjct: 316 GTRK 319

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 16/104 (15%)

Query: 122 DQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
           +++   ++ L    D   + K    R     + +   G                      
Sbjct: 293 EKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGE-------------- 338

Query: 182 RYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP 225
                   ++ +  DLI +ML+Y+P  RI    AL+H FF K  
Sbjct: 339 --SGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKTA 380

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score =  178 bits (453), Expect = 2e-52
 Identities = 42/165 (25%), Positives = 88/165 (53%), Gaps = 21/165 (12%)

Query: 21  DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
              VALK+++N +++   A  EI  L+ + ++D +     + ML+ F +  H+C+ FE+L
Sbjct: 122 HQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELL 181

Query: 81  GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHM-SYQLIYAVDYNN 139
            +++++ +K+N +  +SL  VR  ++ ++              +  +   ++I+  D   
Sbjct: 182 SMNLYELIKKNKFQGFSLPLVRKFAHSILQC------------LDALHKNRIIHC-DL-- 226

Query: 140 KKKRE---VRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
             K E   +++  R  I++IDFGS+ ++ +   T + +R YRAPE
Sbjct: 227 --KPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPE 269

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score =  120 bits (303), Expect = 5e-31
 Identities = 33/126 (26%), Positives = 49/126 (38%), Gaps = 28/126 (22%)

Query: 252 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
            R  I++IDFGS+ ++ +   T + +R YRAPEVIL   +  P D+WS+GCI+ EL  G 
Sbjct: 237 GRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGY 296

Query: 312 TL-----------------------MARK-TKTKYFYHGKLD----WDEKGTAGRYVREN 343
            L                       +     + K F   K           + G  V   
Sbjct: 297 PLLPGEDEGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNG 356

Query: 344 CKPLHH 349
            +    
Sbjct: 357 GRSRRG 362

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 13/55 (23%), Positives = 25/55 (45%)

Query: 184 MASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR 238
            A    +     D + + LE++P+ R++  +ALRHP+  +         +T   R
Sbjct: 375 NALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRRLPKPPTGEKTSVKR 429

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score =  162 bits (412), Expect = 4e-47
 Identities = 49/170 (28%), Positives = 84/170 (49%), Gaps = 23/170 (13%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPN-----GRHLCVKMLDWFDYHG----HMC 74
           VA+KI++  + Y EAA  EI  LQ++ + D       G +  +K+LD F++ G    H+ 
Sbjct: 47  VAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVV 106

Query: 75  IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYA 134
           + FE+LG ++   +K+  +    L  V+ +S QL+           LD + H    +I+ 
Sbjct: 107 MVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLG---------LDYM-HRRCGIIHT 156

Query: 135 VD---YNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE 181
            D    N   +          I++ D G+A + DEH++  + TR YR+PE
Sbjct: 157 -DIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPE 205

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score =  113 bits (285), Expect = 8e-29
 Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILEL 289
           +H   + + +L  +            I++ D G+A + DEH++  + TR YR+PEV+L  
Sbjct: 154 IHTDIKPENVLMEIVD---SPENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGA 210

Query: 290 GWAQPCDVWSIGCIIFELYLGITL 313
            W    D+WS  C+IFEL  G  L
Sbjct: 211 PWGCGADIWSTACLIFELITGDFL 234

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 63.6 bits (155), Expect = 2e-11
 Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 4/63 (6%)

Query: 163 FDDE-HHSTIVSTRHYRAPE---RYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRH 218
           F+       I   + +   +          +E +++ D +S ML+ +P +R      + H
Sbjct: 275 FNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNH 334

Query: 219 PFF 221
           P+ 
Sbjct: 335 PWL 337

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score =  160 bits (407), Expect = 3e-46
 Identities = 65/308 (21%), Positives = 113/308 (36%), Gaps = 74/308 (24%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPN--GRHLCVKMLDWFDYHG----HMCIAF 77
           VA+K++K+ E Y E A  EI  L+ +   DPN   R + V++LD F   G    H+C+ F
Sbjct: 65  VAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVF 124

Query: 78  EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY 137
           E+LG  +  ++ ++NY    L  V+                        +  Q++  +DY
Sbjct: 125 EVLGHHLLKWIIKSNYQGLPLPCVK-----------------------KIIQQVLQGLDY 161

Query: 138 NNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDL 197
            +          +C I   D             I                      L  +
Sbjct: 162 LH---------TKCRIIHTDI--------KPENI----------------------LLSV 182

Query: 198 ISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIR 257
             + +    +E      +   P      S+    A       L        +   +  ++
Sbjct: 183 NEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEP------KNAEKLKVK 236

Query: 258 LIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK 317
           + D G+A +  +H +  + TR YR+ EV++  G+  P D+WS  C+ FEL  G  L    
Sbjct: 237 IADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPH 296

Query: 318 TKTKYFYH 325
           +  +Y   
Sbjct: 297 SGEEYTRD 304

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score = 53.4 bits (128), Expect = 4e-08
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 163 FDDE----HHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRH 218
           F  +    H + +     +           EE     D +  MLE  P +R + +E LRH
Sbjct: 333 FTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRH 392

Query: 219 PFFD 222
           P+ +
Sbjct: 393 PWLN 396

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 68.9 bits (169), Expect = 2e-13
 Identities = 48/259 (18%), Positives = 83/259 (32%), Gaps = 89/259 (34%)

Query: 24  VALKII--KNVEKYREAA-----RLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA 76
           VA+K +    +  + E        +E+  L+K+           +++LDWF+      + 
Sbjct: 71  VAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG----VIRLLDWFERPDSFVLI 126

Query: 77  FEILGLS--VFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYA 134
            E       +FDF+ E   L                 +E        +  R   +Q++ A
Sbjct: 127 LERPEPVQDLFDFITERGAL-----------------QE--------ELARSFFWQVLEA 161

Query: 135 VDYNNKKKREVRR----------VRRCDIRLIDFG-SATFDDEHHSTIVSTRHYRAPE-- 181
           V + +     + R          + R +++LIDFG  A   D  ++    TR Y  PE  
Sbjct: 162 VRHCHNCGV-LHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWI 220

Query: 182 ---RYMAS---------------------DDEE-------------HRQLFDLISKMLEY 204
              RY                        + +E               +   LI   L  
Sbjct: 221 RYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLAL 280

Query: 205 EPSERISLSEALRHPFFDK 223
            PS+R +  E   HP+   
Sbjct: 281 RPSDRPTFEEIQNHPWMQD 299

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 252 RRCDIRLIDFG-SATFDDEHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFEL 307
            R +++LIDFG  A   D  ++    TR Y  PE I    +  +   VWS+G +++++
Sbjct: 185 NRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDM 242

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 54/279 (19%), Positives = 89/279 (31%), Gaps = 91/279 (32%)

Query: 24  VALKII-----KNVEKYREAARL--EINALQKIGEKD--PNGRHLCVKMLDWFDYHGHMC 74
           VA+K+I            ++     E+  L K+G     P      +++LDWF+      
Sbjct: 59  VAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPG----VIRLLDWFETQEGFM 114

Query: 75  IAFE--ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLI 132
           +  E  +    +FD++ E   L                  E           R    Q++
Sbjct: 115 LVLERPLPAQDLFDYITEKGPL-----------------GE--------GPSRCFFGQVV 149

Query: 133 YAVDYNNKKKREVRR----------VRRCDIRLIDFG-SATFDDEHHSTIVSTRHYRAPE 181
            A+ + + +   V R          +RR   +LIDFG  A   DE ++    TR Y  PE
Sbjct: 150 AAIQHCHSRGV-VHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPE 208

Query: 182 -----RYMAS---------------------DDEE-------------HRQLFDLISKML 202
                +Y A                      + ++                   LI + L
Sbjct: 209 WISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEILEAELHFPAHVSPDCCALIRRCL 268

Query: 203 EYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS 241
             +PS R SL E L  P+       V ++        L+
Sbjct: 269 APKPSSRPSLEEILLDPWMQTPAEDVPLNPSKGGPAPLA 307

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 252 RRCDIRLIDFG-SATFDDEHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFEL 307
           RR   +LIDFG  A   DE ++    TR Y  PE I    + A P  VWS+G +++++
Sbjct: 175 RRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDM 232

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 66.8 bits (163), Expect = 2e-12
 Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 2/62 (3%)

Query: 254 CDIRLIDFGSA-TFDDEHHST-IVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           C ++++DFG A T       T  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+    
Sbjct: 201 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHK 260

Query: 312 TL 313
            L
Sbjct: 261 IL 262

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 14/29 (48%), Positives = 23/29 (79%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+SKML  +P++RIS+ +AL+HP+ +  
Sbjct: 334 DLLSKMLVIDPAKRISVDDALQHPYINVW 362

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 254 CDIRLIDFGSA--TFDDEHHSTIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIFELY 308
             ++L DFGSA      E +   + +R+YRAPE+I   G        D+WS+GCI  E+ 
Sbjct: 169 GTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIF--GNQHYTTAVDIWSVGCIFAEMM 226

Query: 309 LG 310
           LG
Sbjct: 227 LG 228

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 55.8 bits (135), Expect = 7e-09
 Identities = 16/29 (55%), Positives = 22/29 (75%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+S +L+Y P ER+   EAL HP+FD+L
Sbjct: 293 DLLSALLQYLPEERMKPYEALCHPYFDEL 321

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 17/91 (18%)

Query: 106 YQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR-------------CD 152
           ++         +      ++   +QLI ++   +     V    R               
Sbjct: 113 HRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNV--CHRDIKPHNVLVNEADGT 170

Query: 153 IRLIDFGSA--TFDDEHHSTIVSTRHYRAPE 181
           ++L DFGSA      E +   + +R+YRAPE
Sbjct: 171 LKLCDFGSAKKLSPSEPNVAYICSRYYRAPE 201

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 2/62 (3%)

Query: 254 CDIRLIDFGSA-TFDDEHHSTI-VSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
           C ++++DFG A T       T  V TR+YRAPEVIL +G+ +  D+WS+GCI+ E+  G 
Sbjct: 164 CTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGG 223

Query: 312 TL 313
            L
Sbjct: 224 VL 225

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 15/29 (51%), Positives = 22/29 (75%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+SKML  + S+RIS+ EAL+HP+ +  
Sbjct: 297 DLLSKMLVIDASKRISVDEALQHPYINVW 325

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 64.7 bits (158), Expect = 9e-12
 Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D   +  V TR YRAPEVIL    + Q  D+WS+GCI+ E+  G T
Sbjct: 165 CELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKT 224

Query: 313 L 313
           L
Sbjct: 225 L 225

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           +L+ KML  +  +R++  EAL HP+F+ L
Sbjct: 286 NLLEKMLVLDAEQRVTAGEALAHPYFESL 314

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 28/61 (45%), Positives = 38/61 (62%), Gaps = 1/61 (1%)

Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A   D   +  V TR YRAPEVIL      Q  D+WS+GCI+ E+  G T
Sbjct: 163 CELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKT 222

Query: 313 L 313
           L
Sbjct: 223 L 223

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 13/29 (44%), Positives = 21/29 (72%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+ KMLE +  +R++ ++AL HPFF+  
Sbjct: 284 DLLEKMLELDVDKRLTAAQALTHPFFEPF 312

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 63.8 bits (155), Expect = 1e-11
 Identities = 17/179 (9%), Positives = 48/179 (26%), Gaps = 18/179 (10%)

Query: 165 DEHHSTIVSTRHYRAPER-YMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF-- 221
              H  +     +       +  +   +  L + I+            + + L   F   
Sbjct: 124 SMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINLYKNTPEKV---MPQGLVISFAMR 180

Query: 222 -----DKLPSSVRVHAQTQADRIL--SSVSSLVMRRVRRCDIRLIDFGSATF-----DDE 269
                +++     +H   + D  +  +              + LID G +          
Sbjct: 181 MLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGT 240

Query: 270 HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYHGKL 328
             +    T  ++  E++    W    D + +   ++ +  G  +  +    +    G  
Sbjct: 241 IFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLF 299

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 27/267 (10%), Positives = 60/267 (22%), Gaps = 92/267 (34%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEK-DPNGRHLCVKMLDWFDYHGHMCIAFEIL-G 81
             LK+ K       A   E     ++ E+  P+ +H+ +K      +     +  E+   
Sbjct: 98  FVLKVQK------PANPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSY 151

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY---- 137
            ++ + +                       K           V   + +++Y ++     
Sbjct: 152 GTLLNAINL--------------------YKNTPEKVMPQGLVISFAMRMLYMIEQVHDC 191

Query: 138 ---------------NNKKKREVRRVRRCDIRLIDFGSATF-----DDEHHSTIVSTRHY 177
                          N   +++        + LID G +            +    T  +
Sbjct: 192 EIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGF 251

Query: 178 RAPE--------------------------RYMASDDEEHRQLF--------------DL 197
           +  E                           YM   +E                    + 
Sbjct: 252 QCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGGECKPEGLFRRLPHLDMWNEF 311

Query: 198 ISKMLEYEPSERISLSEALRHPFFDKL 224
              ML       +   + LR       
Sbjct: 312 FHVMLNIPDCHHLPSLDLLRQKLKKVF 338

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 62.7 bits (153), Expect = 3e-11
 Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGIT 312
           C+++++DFG A    +  +  V+TR YRAPE++L    + Q  D+WS+GCI+ EL  G T
Sbjct: 169 CELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRT 228

Query: 313 L 313
           L
Sbjct: 229 L 229

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+ KML  +  +RI+ ++AL H +F + 
Sbjct: 290 DLLEKMLVLDSDKRITAAQALAHAYFAQY 318

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 62.7 bits (153), Expect = 4e-11
 Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 3/63 (4%)

Query: 254 CDIRLIDFGSA-TFDDEHHSTI-VSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLG 310
            DI + DF  A     + + T  V+ R YRAPE++++  G+ +  D+WS GC++ E++  
Sbjct: 171 NDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNR 230

Query: 311 ITL 313
             L
Sbjct: 231 KAL 233

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DLI+KMLE+ P  RIS  +ALRHP+F+ L
Sbjct: 295 DLIAKMLEFNPQRRISTEQALRHPYFESL 323

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 62.1 bits (151), Expect = 5e-11
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 7/62 (11%)

Query: 254 CDIRLIDFGSA--TFDDEHHSTIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIFELY 308
             ++L DFGSA      E     + +R YRAPE++L  G  +     D+WSIGC+  EL 
Sbjct: 179 NTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELML--GATEYTPSIDLWSIGCVFGELI 236

Query: 309 LG 310
           LG
Sbjct: 237 LG 238

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+ ++L YEP  RI+  EA+ HPFFD L
Sbjct: 300 DLLEQILRYEPDLRINPYEAMAHPFFDHL 328

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 61.9 bits (151), Expect = 5e-11
 Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 7/67 (10%)

Query: 254 CDIRLIDFGSA-TFDDEHHSTI-----VSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFE 306
           CD+++ DFG A   D +H  T      V+TR YRAPE++L   G+ +  D+WS+GCI+ E
Sbjct: 165 CDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE 224

Query: 307 LYLGITL 313
           +     +
Sbjct: 225 MLSNRPI 231

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+ KML + P +RI + +AL HP+ ++ 
Sbjct: 292 DLLDKMLTFNPHKRIEVEQALAHPYLEQY 320

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 62.0 bits (151), Expect = 6e-11
 Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 7/62 (11%)

Query: 254 CDIRLIDFGSA--TFDDEHHSTIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIFELY 308
             ++L DFGSA      E + + + +R+YRAPE+I   G        DVWS GC++ EL 
Sbjct: 194 AVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIF--GATDYTSSIDVWSAGCVLAELL 251

Query: 309 LG 310
           LG
Sbjct: 252 LG 253

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 14/29 (48%), Positives = 20/29 (68%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
            L S++LEY P+ R++  EA  H FFD+L
Sbjct: 315 ALCSRLLEYTPTARLTPLEACAHSFFDEL 343

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 41/188 (21%), Positives = 74/188 (39%), Gaps = 49/188 (26%)

Query: 12  VCTNVVYEVDSVVALKIIKNVEKY--REAARLEINALQKIGEKDPNGRHLCVKMLDWFDY 69
           V    + +   +VA+K +   +++  RE   L+I  ++K+     N     V++  +F Y
Sbjct: 70  VYQAKLCDSGELVAIKKVLQDKRFKNRE---LQI--MRKL--DHCN----IVRLRYFF-Y 117

Query: 70  HGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSY 129
                     L L V D++ E  Y        R   +   Y++    LP  +  V+   Y
Sbjct: 118 SSGEKKDEVYLNL-VLDYVPETVY--------RVARH---YSRAKQTLP--VIYVKLYMY 163

Query: 130 QLIYAVDYNNKKKREVRRV-------------RRCDI-RLIDFGSA--TFDDEHHSTIVS 173
           QL  ++ Y +        +                 + +L DFGSA      E + + + 
Sbjct: 164 QLFRSLAYIHS-----FGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYIC 218

Query: 174 TRHYRAPE 181
           +R+YRAPE
Sbjct: 219 SRYYRAPE 226

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 61.5 bits (150), Expect = 7e-11
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 254 CDIRLIDFGSA-TFDDEHHSTI-----VSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFE 306
             +++ DFG A   D  +         + T+ YR+P ++L    + +  D+W+ GCI  E
Sbjct: 158 LVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAE 217

Query: 307 LYLGITL 313
           +  G TL
Sbjct: 218 MLTGKTL 224

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           D + ++L + P +R++  EAL HP+    
Sbjct: 284 DFLEQILTFSPMDRLTAEEALSHPYMSIY 312

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 7/60 (11%)

Query: 256 IRLIDFGSA--TFDDEHHSTIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIFELYLG 310
           ++LIDFGSA      E + + + +R+YRAPE+I   G        D+WS GC++ EL  G
Sbjct: 181 LKLIDFGSAKILIAGEPNVSYICSRYYRAPELIF--GATNYTTNIDIWSTGCVMAELMQG 238

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 19/29 (65%), Positives = 24/29 (82%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DLIS++LEY PS R++  EAL HPFFD+L
Sbjct: 300 DLISRLLEYTPSARLTAIEALCHPFFDEL 328

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 49/176 (27%)

Query: 24  VALKIIKN--VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG 81
           VA+K +      K RE   L+I  ++ +  K PN     V +  +F Y          L 
Sbjct: 67  VAIKKVLQDKRFKNRE---LQI--MRIV--KHPN----VVDLKAFF-YSNGDKKDEVFLN 114

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK 141
           L V +++ E  Y        R   +   YAK    +P  +  ++   YQL+ ++ Y +  
Sbjct: 115 L-VLEYVPETVY--------RASRH---YAKLKQTMP--MLLIKLYMYQLLRSLAYIHS- 159

Query: 142 KREVRRV-------------RRCD-IRLIDFGSA--TFDDEHHSTIVSTRHYRAPE 181
                 +                  ++LIDFGSA      E + + + +R+YRAPE
Sbjct: 160 ----IGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPE 211

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 40/257 (15%), Positives = 71/257 (27%), Gaps = 86/257 (33%)

Query: 23  VVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI 79
           + A+K   +     K R     E+ + +K+G + P     CV++   ++  G + +  E+
Sbjct: 84  LYAVKRSMSPFRGPKDRARKLAEVGSHEKVG-QHPC----CVRLEQAWEEGGILYLQTEL 138

Query: 80  LGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHM-SYQLIYA---- 134
            G S+    +          QV       + A            + H+ S  L++     
Sbjct: 139 CGPSLQQHCEAWG-ASLPEAQVWGYLRDTLLA------------LAHLHSQGLVHLDVKP 185

Query: 135 ----VDYNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE----RY- 183
               +                  +L DFG                   Y APE     Y 
Sbjct: 186 ANIFLGPRG------------RCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYG 233

Query: 184 --------------MA------SDDEEHRQLF-----------------DLISKMLEYEP 206
                         +A         E  +QL                   ++  MLE +P
Sbjct: 234 TAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPEFTAGLSSELRSVLVMMLEPDP 293

Query: 207 SERISLSEALRHPFFDK 223
             R +    L  P   +
Sbjct: 294 KLRATAEALLALPVLRQ 310

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 3/55 (5%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
             +L DFG                   Y APE++    +    DV+S+G  I E+
Sbjct: 195 RCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEV 248

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 61.0 bits (148), Expect = 1e-10
 Identities = 43/289 (14%), Positives = 86/289 (29%), Gaps = 95/289 (32%)

Query: 24  VALKIIK------NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF 77
            A+KI+          K  E  + E+  ++K+    PN      ++ + ++   ++C+  
Sbjct: 54  RAIKIMNKNKIRQINPKDVERIKTEVRLMKKL--HHPN----IARLYEVYEDEQYICLVM 107

Query: 78  EIL-GLSVFDFLKENN---------------YLPYSLDQVRHMSYQLIYAKENNYLPYSL 121
           E+  G  + D L                     P        ++  +   +E+       
Sbjct: 108 ELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQRE 167

Query: 122 DQVRHMSYQLIYAVDYNNKK-------KRE---VRRVRRCDIRLIDFGSATF-------D 164
             + ++  Q+  A+ Y + +       K E       +  +I+L+DFG +         +
Sbjct: 168 KLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGE 227

Query: 165 DEHHSTIVSTRHYRAPE-------RY-MASD-------------------DEEHRQLF-- 195
               +T   T ++ APE        Y    D                             
Sbjct: 228 YYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQ 287

Query: 196 ---------------------DLISKMLEYEPSERISLSEALRHPFFDK 223
                                DL+S +L     ER     AL+HP+  +
Sbjct: 288 VLNKKLCFENPNYNVLSPLARDLLSNLLNRNVDERFDAMRALQHPWISQ 336

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 9/62 (14%)

Query: 255 DIRLIDFGSATF-------DDEHHSTIVSTRHYRAPEVILELGWA--QPCDVWSIGCIIF 305
           +I+L+DFG +         +    +T   T ++ APEV+     +    CD WS G ++ 
Sbjct: 208 EIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLH 267

Query: 306 EL 307
            L
Sbjct: 268 LL 269

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 59.6 bits (144), Expect = 3e-10
 Identities = 31/285 (10%), Positives = 75/285 (26%), Gaps = 72/285 (25%)

Query: 16  VVYEV-----DSVVALKIIKNVEKYR----EAARLEINALQKI-GEKDPNGRHLCVKMLD 65
              E           + +    E+      +  + E+  L+ + G K+     + ++ + 
Sbjct: 88  AYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIF 147

Query: 66  WFDYHGHMCIAFEILGLSVF-DFLKENNYLPYSLDQVRHMSY-QLIYAKENNYLPYSLDQ 123
            FD          I       D    + +  Y   Q    ++ +++ +  + +       
Sbjct: 148 PFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHA 207

Query: 124 VRHMSYQLIYAVDYNNKKKREVRRV--------RRCDIRLIDFGSATFDDEHHSTIVSTR 175
              ++ Q+I  +   +        +        +R  + L  F     D         +R
Sbjct: 208 RLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARV-VSSVSR 266

Query: 176 HYRAPE----------------RYMASDD------------------------EEHRQLF 195
            +  PE                    S D                             +F
Sbjct: 267 GFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGSEWIF 326

Query: 196 -----------DLISKMLEYEPSERISLSEALRHPFFDKLPSSVR 229
                       L+   L Y   +R+   +A+  P +++L + + 
Sbjct: 327 RSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTELS 371

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 52.7 bits (126), Expect = 6e-08
 Identities = 28/209 (13%), Positives = 57/209 (27%), Gaps = 30/209 (14%)

Query: 124 VRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERY 183
           V    +      +   + K EV R+R     + +   A             +  +  +  
Sbjct: 103 VHVPYFTERPPSNAIKQMKEEVLRLRLL-RGIKNQKQAKVHLRFIFPFDLVKDPQKKKMI 161

Query: 184 MASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK-LPSSVRVHAQTQADRILSS 242
               DE    +          + + +      L H    K L    R+    Q   ++  
Sbjct: 162 RVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQ---VIRL 218

Query: 243 VSSLVMRRV-------------RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILEL 289
           ++SL    +             +R  + L  F     D         +R +  PE+    
Sbjct: 219 LASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGARV-VSSVSRGFEPPELEARR 277

Query: 290 GWAQP-----------CDVWSIGCIIFEL 307
                            D W++G +I+ +
Sbjct: 278 ATISYHRDRRTLMTFSFDAWALGLVIYWI 306

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 42/262 (16%), Positives = 76/262 (29%), Gaps = 89/262 (33%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VA+K I   E +  A R E+  L++  ++ PN     ++            IA E+   +
Sbjct: 51  VAVKRI-LPECFSFADR-EVQLLRES-DEHPN----VIRYFCTEKDRQFQYIAIELCAAT 103

Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD------- 136
           + +++++ ++  +   +   +  Q                + H+    I   D       
Sbjct: 104 LQEYVEQKDF-AHLGLEPITLLQQTTSG------------LAHLHSLNIVHRDLKPHNIL 150

Query: 137 YNNKKKREVRRVRRCDIRLIDFG-SATFDDEHHS-----TIVSTRHYRAPE--------R 182
            +        +       + DFG         HS      +  T  + APE         
Sbjct: 151 ISMPNAHGKIKAM-----ISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKEN 205

Query: 183 Y-MASD--------------------DEEHRQLF----------------------DLIS 199
                D                        RQ                        +LI 
Sbjct: 206 PTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANILLGACSLDCLHPEKHEDVIARELIE 265

Query: 200 KMLEYEPSERISLSEALRHPFF 221
           KM+  +P +R S    L+HPFF
Sbjct: 266 KMIAMDPQKRPSAKHVLKHPFF 287

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 52.9 bits (127), Expect = 7e-08
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 256 IRLIDFG-SATFDDEHHS-----TIVSTRHYRAPEVILELGWAQP---CDVWSIGCIIFE 306
             + DFG         HS      +  T  + APE++ E     P    D++S GC+ + 
Sbjct: 162 AMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYY 221

Query: 307 LYLG 310
           +   
Sbjct: 222 VISE 225

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 58.5 bits (142), Expect = 6e-10
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            +++ DFG  T   +D   +    T  Y +PE I    + +  D++++G I+ EL
Sbjct: 160 QVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAEL 214

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 55.4 bits (134), Expect = 5e-09
 Identities = 46/269 (17%), Positives = 80/269 (29%), Gaps = 84/269 (31%)

Query: 17  VYEV-----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG 71
           V++           +K +K      E A  E+ AL K+     N     V     +D   
Sbjct: 27  VFKAKHRIDGKTYVIKRVK---YNNEKAEREVKALAKL--DHVN----IVHYNGCWDGFD 77

Query: 72  HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSY-------QLIYAKENNYLPYSLDQV 124
           +     +    S      +   L +       M +       Q I  +    L       
Sbjct: 78  Y-----DPETSSKNSSRSKTKCL-FIQ-----MEFCDKGTLEQWIEKRRGEKLDK--VLA 124

Query: 125 RHMSYQLIYAVDYNNKKK---REVR-----RVRRCDIRLIDFGSATF--DDEHHSTIVST 174
             +  Q+   VDY + KK   R+++      V    +++ DFG  T   +D   +    T
Sbjct: 125 LELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGT 184

Query: 175 RHYRAPE--------------------------RYMASDDEEH--------------RQL 194
             Y +PE                             A +  +               ++ 
Sbjct: 185 LRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIISDIFDKKE 244

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDK 223
             L+ K+L  +P +R + SE LR     K
Sbjct: 245 KTLLQKLLSKKPEDRPNTSEILRTLTVWK 273

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 58.4 bits (142), Expect = 8e-10
 Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 7/63 (11%)

Query: 253 RCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIFEL 307
              +RLID+G A F    + ++  V++R+++ PE++  + +       D+WS+GC++  +
Sbjct: 167 HRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELL--VDYQMYDYSLDMWSLGCMLASM 224

Query: 308 YLG 310
              
Sbjct: 225 IFR 227

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           D + K+L Y+   R++  EA+ HP+F  +
Sbjct: 298 DFLDKLLRYDHQSRLTAREAMEHPYFYTV 326

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 37/181 (20%), Positives = 70/181 (38%), Gaps = 43/181 (23%)

Query: 12  VCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG 71
           V   +    +  V +KI+K V+K +   R EI  L+ +    PN     + + D      
Sbjct: 52  VFEAINITNNEKVVVKILKPVKKKK-IKR-EIKILENLRG-GPN----IITLADIVKDPV 104

Query: 72  HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQL 131
               A       VF+ +   ++            YQ            +   +R   Y++
Sbjct: 105 SRTPAL------VFEHVNNTDF---------KQLYQ----------TLTDYDIRFYMYEI 139

Query: 132 IYAVDYNNKKK---REVR------RVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAP 180
           + A+DY +      R+V+            +RLID+G A F    + ++  V++R+++ P
Sbjct: 140 LKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGP 199

Query: 181 E 181
           E
Sbjct: 200 E 200

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 18/76 (23%)

Query: 254 CDIRLIDFGSA-TFDDEHHSTI------------VSTRHYRAPEVILELGWA---QPCDV 297
           CD+++ DFG A   D+                  V+TR YRAPEV+  L  A   +  DV
Sbjct: 149 CDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVM--LTSAKYSRAMDV 206

Query: 298 WSIGCIIFELYLGITL 313
           WS GCI+ EL+L   +
Sbjct: 207 WSCGCILAELFLRRPI 222

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 12/29 (41%), Positives = 20/29 (68%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+ +ML ++P++RI+  EAL HP+    
Sbjct: 284 DLLQRMLVFDPAKRITAKEALEHPYLQTY 312

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 52/296 (17%), Positives = 89/296 (30%), Gaps = 101/296 (34%)

Query: 16  VVYEV-----DSVVALKIIK----NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDW 66
            V            A+K+I       +  +E+   E+  L+++    PN     +K+ ++
Sbjct: 41  EVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDH--PN----IMKLYEF 94

Query: 67  FDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVR 125
           F+  G+  +  E+  G  +FD +                              +S     
Sbjct: 95  FEDKGYFYLVGEVYTGGELFDEIISRKR-------------------------FSEVDAA 129

Query: 126 HMSYQLIYAVDYNNKK-------KRE----VRRVRRCDIRLIDFGSATF--DDEHHSTIV 172
            +  Q++  + Y +K        K E      + +  +IR+IDFG +T     +     +
Sbjct: 130 RIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKI 189

Query: 173 STRHYRAPE----RY-MASD-------------------DEEHRQLF------------- 195
            T +Y APE     Y    D                         +              
Sbjct: 190 GTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELP 249

Query: 196 ----------DLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS 241
                     DLI KML Y PS RIS  +AL H +                D  + 
Sbjct: 250 QWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTYTKEQISVDVPSLDNAIL 305

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 254 CDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            +IR+IDFG +T     +     + T +Y APEV L   + + CDVWS G I++ L
Sbjct: 166 ANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEV-LHGTYDEKCDVWSTGVILYIL 220

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 3/55 (5%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +I+++DFG ++F   D      + T +Y APEV L+  + + CDVWS G I++ L
Sbjct: 187 NIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEV-LKKKYNEKCDVWSCGVIMYIL 240

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 52/306 (16%), Positives = 97/306 (31%), Gaps = 111/306 (36%)

Query: 16  VVYEV-----DSVVALKIIK--------------NVEKYREAARLEINALQKIGEKDPNG 56
            V         S  A+K+IK              N+EK+ E    EI+ L+ +    PN 
Sbjct: 51  EVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDH--PN- 107

Query: 57  RHLCVKMLDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENN 115
               +K+ D F+   +  +  E   G  +F+ +   +                       
Sbjct: 108 ---IIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRHK---------------------- 142

Query: 116 YLPYSLDQVRHMSYQLIYAVDYNNKK-------KRE----VRRVRRCDIRLIDFGSATF- 163
              +      ++  Q++  + Y +K        K E      +    +I+++DFG ++F 
Sbjct: 143 ---FDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFF 199

Query: 164 -DDEHHSTIVSTRHYRAPE----RY-MASD-------------------DEEHRQLF--- 195
             D      + T +Y APE    +Y    D                    +  + +    
Sbjct: 200 SKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKV 259

Query: 196 --------------------DLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ 235
                               +LI  ML Y+ ++R +  EAL   +  K  +++    Q  
Sbjct: 260 EKGKYYFDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKYANNINKSDQKT 319

Query: 236 ADRILS 241
               LS
Sbjct: 320 LCGALS 325

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 52/274 (18%), Positives = 87/274 (31%), Gaps = 87/274 (31%)

Query: 24  VALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
            A+K+I       K       E+  L+K+    PN     +K+ +  +      I  E+ 
Sbjct: 50  YAVKVINKASAKNKDTSTILREVELLKKLDH--PN----IMKLFEILEDSSSFYIVGELY 103

Query: 81  -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD--- 136
            G  +FD + +     +S      +  Q+               + +M    I   D   
Sbjct: 104 TGGELFDEIIKRKR--FSEHDAARIIKQVFSG------------ITYMHKHNIVHRDLKP 149

Query: 137 ----YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE----RY-MA 185
                 +K+K        CDI++IDFG +T    +      + T +Y APE     Y   
Sbjct: 150 ENILLESKEKD-------CDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEK 202

Query: 186 SD-------------------DEEHRQLF-----------------------DLISKMLE 203
            D                    +    +                        DLI KML 
Sbjct: 203 CDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLT 262

Query: 204 YEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD 237
           + PS RI+ ++ L HP+  K  S     +   + 
Sbjct: 263 FHPSLRITATQCLEHPWIQKYSSETPTISDLPSL 296

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 254 CDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           CDI++IDFG +T    +      + T +Y APEV L   + + CDVWS G I++ L
Sbjct: 161 CDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVWSAGVILYIL 215

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 254 CDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
             I+++DFG +    + +     + T +Y APEV L   + + CDVWSIG I+F L
Sbjct: 176 ALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEV-LRKKYDEKCDVWSIGVILFIL 230

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 56.6 bits (137), Expect = 4e-09
 Identities = 45/275 (16%), Positives = 84/275 (30%), Gaps = 100/275 (36%)

Query: 16  VVYEV-----DSVVALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF 67
            V            A+KII               E+  L+ +    PN     +K+ D+F
Sbjct: 52  EVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDH--PN----IMKLYDFF 105

Query: 68  DYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRH 126
           +   +  +  E   G  +FD +                              ++      
Sbjct: 106 EDKRNYYLVMECYKGGELFDEIIHRMK-------------------------FNEVDAAV 140

Query: 127 MSYQLIYAVDYNNKK-------KRE----VRRVRRCDIRLIDFGSATF--DDEHHSTIVS 173
           +  Q++  V Y +K        K E      + +   I+++DFG +    + +     + 
Sbjct: 141 IIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLG 200

Query: 174 TRHYRAPE----RY-MASD-------------------DEEHRQLF-------------- 195
           T +Y APE    +Y    D                    +  +++               
Sbjct: 201 TAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPE 260

Query: 196 ---------DLISKMLEYEPSERISLSEALRHPFF 221
                    DLI +ML+++   RIS  +AL HP+ 
Sbjct: 261 WKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWI 295

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 56.6 bits (136), Expect = 4e-09
 Identities = 7/61 (11%), Positives = 16/61 (26%), Gaps = 2/61 (3%)

Query: 252 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVIL--ELGWAQPCDVWSIGCIIFELYL 309
               + L D  +                Y   E +      +    + W +G  I+ ++ 
Sbjct: 229 PDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWC 288

Query: 310 G 310
            
Sbjct: 289 L 289

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 53.1 bits (127), Expect = 5e-08
 Identities = 15/72 (20%), Positives = 25/72 (34%)

Query: 158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALR 217
           FG  T   +      S R          S       +  LI + L ++   R+   EA+ 
Sbjct: 293 FGLVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAME 352

Query: 218 HPFFDKLPSSVR 229
            P F +L + + 
Sbjct: 353 TPEFLQLQNEIS 364

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 47.7 bits (113), Expect = 3e-06
 Identities = 26/187 (13%), Positives = 42/187 (22%), Gaps = 23/187 (12%)

Query: 16  VVYEV-----DSVVALKII----KNVEKYREAARLEINALQKIGEKDPN---GRHLCVKM 63
           VV+ V         ALK+     +N     E       A  ++  + P     R   +  
Sbjct: 77  VVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLP 136

Query: 64  LDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMS-YQLIYAKENNYLPYSLD 122
            D          A    G    D+   N  L      V     +  +           + 
Sbjct: 137 SDAVAVQSQPPFAQLSPGQD--DYAVANYLLLMPAASVDLELLFSTLDFVYVFRGDEGIL 194

Query: 123 QVRHMSYQLIYAVDYNNKKKREVRRV--------RRCDIRLIDFGSATFDDEHHSTIVST 174
            +  ++ QLI        K                   + L D  +              
Sbjct: 195 ALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTRGPASSVP 254

Query: 175 RHYRAPE 181
             Y   E
Sbjct: 255 VTYAPRE 261

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 56.0 bits (136), Expect = 4e-09
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLPSSV 228
            DL+S ML ++P++RIS  +A+ HP+F  L   +
Sbjct: 278 IDLLSNMLCFDPNKRISARDAMNHPYFKDLDPQI 311

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 256 IRLIDFGSA-TFDDEHH--STIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLGI 311
           ++L DFG A  F       +  V T  YRAP+V++    ++   D+WSIGCI  E+  G 
Sbjct: 158 LKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGK 217

Query: 312 TL 313
            L
Sbjct: 218 PL 219

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 56.2 bits (136), Expect = 4e-09
 Identities = 48/303 (15%), Positives = 97/303 (32%), Gaps = 107/303 (35%)

Query: 23  VVALKII--KNVEKYREAARL--EINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
           V A KI+    + K  +  ++  EI+  + +     +     V    +F+ +  + +  E
Sbjct: 68  VFAGKIVPKSLLLKPHQREKMSMEISIHRSL--AHQH----VVGFHGFFEDNDFVFVVLE 121

Query: 79  IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY 137
           +    S+ +  K    L                         +  + R+   Q++    Y
Sbjct: 122 LCRRRSLLELHKRRKAL-------------------------TEPEARYYLRQIVLGCQY 156

Query: 138 NNKKKREVRRV-------------RRCDIRLIDFGSAT---FDDEHHSTIVSTRHYRAPE 181
            ++      RV                ++++ DFG AT   +D E    +  T +Y APE
Sbjct: 157 LHR-----NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPE 211

Query: 182 RYMAS---------------------------DDEEHRQLF------------------- 195
             + S                           +    ++ +                   
Sbjct: 212 --VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAA 269

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDK--LPSSVRVHAQTQADRILSSVSSLVMRRVRR 253
            LI KML+ +P+ R +++E L   FF    +P+ + +   T   R   + SSL     + 
Sbjct: 270 SLIQKMLQTDPTARPTINELLNDEFFTSGYIPARLPITCLTIPPRFSIAPSSLDPSNRKP 329

Query: 254 CDI 256
             +
Sbjct: 330 LTV 332

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 3/60 (5%)

Query: 254 CDIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            ++++ DFG AT   +D E    +  T +Y APEV+ + G +   DVWSIGCI++ L +G
Sbjct: 178 LEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG 237

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 41/260 (15%), Positives = 79/260 (30%), Gaps = 93/260 (35%)

Query: 24  VALKII-KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-G 81
            A K I K   +  +  + EI  ++ +    PN     +++ + F+ +  + +  E+  G
Sbjct: 37  RAAKKIPKYFVEDVDRFKQEIEIMKSLDH--PN----IIRLYETFEDNTDIYLVMELCTG 90

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK 141
             +F+ +                              +       +   ++ AV Y +K 
Sbjct: 91  GELFERVVHKRV-------------------------FRESDAARIMKDVLSAVAYCHKL 125

Query: 142 -------KRE----VRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE----RY- 183
                  K E    +       ++LIDFG A      +   T V T +Y +P+     Y 
Sbjct: 126 NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGLYG 185

Query: 184 MASD-------------------DEEHRQLF-----------------------DLISKM 201
              D                        ++                         LI ++
Sbjct: 186 PECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNVSPQAESLIRRL 245

Query: 202 LEYEPSERISLSEALRHPFF 221
           L   P +RI+  +AL H +F
Sbjct: 246 LTKSPKQRITSLQALEHEWF 265

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            ++LIDFG A      +   T V T +Y +P+V LE  +   CD WS G +++ L
Sbjct: 147 PLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQV-LEGLYGPECDEWSAGVMMYVL 200

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 47/262 (17%), Positives = 79/262 (30%), Gaps = 89/262 (33%)

Query: 24  VALKII--KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL- 80
             +K I     +   E    EI  L+ +    PN     +K+ + F+ + +M I  E   
Sbjct: 50  RVIKTINKDRSQVPMEQIEAEIEVLKSLDH--PN----IIKIFEVFEDYHNMYIVMETCE 103

Query: 81  GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK 140
           G  + +                      I + +      S   V  +  Q++ A+ Y + 
Sbjct: 104 GGELLER---------------------IVSAQARGKALSEGYVAELMKQMMNALAYFHS 142

Query: 141 K-------KRE----VRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE----RY 183
           +       K E            I++IDFG A     DEH +    T  Y APE      
Sbjct: 143 QHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFKRDV 202

Query: 184 -MASD-------------------DEEHRQLF----------------------DLISKM 201
               D                        ++                       DL+ +M
Sbjct: 203 TFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECRPLTPQAVDLLKQM 262

Query: 202 LEYEPSERISLSEALRHPFFDK 223
           L  +P  R S ++ L H +F +
Sbjct: 263 LTKDPERRPSAAQVLHHEWFKQ 284

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 52.2 bits (126), Expect = 6e-08
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            I++IDFG A     DEH +    T  Y APEV  +      CD+WS G +++ L
Sbjct: 165 PIKIIDFGLAELFKSDEHSTNAAGTALYMAPEV-FKRDVTFKCDIWSAGVVMYFL 218

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 56.2 bits (135), Expect = 6e-09
 Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 12/110 (10%)

Query: 253 RCDIRLIDFG-SATFDDEHH-STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           R   ++ID G +   D     +  V T  Y APE++ +  +    D WS G + FE   G
Sbjct: 160 RLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITG 219

Query: 311 ---------ITLMARKTKTKYFYHGKLDWDEKGTAGRYVRENCKPLHHSP 351
                          K + K   H  +  D  G   ++      P H S 
Sbjct: 220 FRPFLPNWQPVQWHGKVREKSNEHIVVYDDLTGAV-KFSSVLPTPNHLSG 268

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 55.3 bits (134), Expect = 7e-09
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 255 DIRLIDFGSATFDDEHH-STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            I + DFG +  +     ST   T  Y APEV+ +  +++  D WSIG I + L
Sbjct: 147 KIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYIL 200

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 56/271 (20%), Positives = 87/271 (32%), Gaps = 98/271 (36%)

Query: 16  VVYEV-----DSVVALKII-KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY 69
            V+ V       + ALK I K+      +   EI  L+KI  K  N     V + D ++ 
Sbjct: 24  EVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKI--KHEN----IVTLEDIYES 77

Query: 70  HGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMS 128
             H  +  +++ G  +FD + E                            Y+      + 
Sbjct: 78  TTHYYLVMQLVSGGELFDRILERGV-------------------------YTEKDASLVI 112

Query: 129 YQLIYAVDYNNKK-------KRE----VRRVRRCDIRLIDFGSATFDDEHH-STIVSTRH 176
            Q++ AV Y ++        K E    +       I + DFG +  +     ST   T  
Sbjct: 113 QQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPG 172

Query: 177 YRAPE-----RY-MASD-------------------DEEHRQLF---------------- 195
           Y APE      Y  A D                   +E   +LF                
Sbjct: 173 YVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWD 232

Query: 196 -------DLISKMLEYEPSERISLSEALRHP 219
                  D I  +LE +P+ER +  +AL HP
Sbjct: 233 DISESAKDFICHLLEKDPNERYTCEKALSHP 263

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            ++L DFG A    D E       T  Y +PEV+ +  +++P D+W+ G I++
Sbjct: 169 AVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILY 221

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 50/278 (17%), Positives = 88/278 (31%), Gaps = 89/278 (32%)

Query: 24  VALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
            A KII   K   +  +    E    +K+  + PN     V++ D         + F+++
Sbjct: 57  FAAKIINTKKLSARDFQKLEREARICRKL--QHPN----IVRLHDSIQEESFHYLVFDLV 110

Query: 81  -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD--- 136
            G  +F+ +    +  YS     H   Q++ +            + +     I   +   
Sbjct: 111 TGGELFEDIVAREF--YSEADASHCIQQILES------------IAYCHSNGIVHRNLKP 156

Query: 137 ----YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE-----RY-M 184
                 +K K          ++L DFG A    D E       T  Y +PE      Y  
Sbjct: 157 ENLLLASKAKGA-------AVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSK 209

Query: 185 ASD-------------------DEEHRQLF-----------------------DLISKML 202
             D                   DE+  +L+                        LI  ML
Sbjct: 210 PVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSML 269

Query: 203 EYEPSERISLSEALRHPFF-DKLPSSVRVHAQTQADRI 239
              P +RI+  +AL+ P+  ++   +  +H Q   D +
Sbjct: 270 TVNPKKRITADQALKVPWICNRERVASAIHRQDTVDCL 307

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 55.3 bits (134), Expect = 8e-09
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLP 225
            DL++ MLE +P +RIS   AL HP+F    
Sbjct: 296 LDLLTAMLEMDPVKRISAKNALEHPYFSHND 326

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 256 IRLIDFGSA-TFDDEHH--STIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLGI 311
           +++ DFG A  F       +  + T  YR PE++L    ++   D+WSI CI  E+ +  
Sbjct: 176 LKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKT 235

Query: 312 TLM 314
            L 
Sbjct: 236 PLF 238

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 55.3 bits (134), Expect = 8e-09
 Identities = 14/34 (41%), Positives = 23/34 (67%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLPSSV 228
            DL++K+L++E   RIS  +A++HPFF  L   +
Sbjct: 259 ADLLTKLLQFEGRNRISAEDAMKHPFFLSLGERI 292

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 256 IRLIDFGSA-TFDDEHH--STIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLGI 311
           ++L DFG A             V T  YR P+++L    ++   D+W +GCI +E+  G 
Sbjct: 139 LKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGR 198

Query: 312 TLM 314
            L 
Sbjct: 199 PLF 201

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            +++ DFG +          T+  T  Y APE++    +    D+WS+G I +
Sbjct: 189 PLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITY 241

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 49/272 (18%), Positives = 87/272 (31%), Gaps = 100/272 (36%)

Query: 16  VVYEV-----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH 70
           +VY           ALK++K     ++  R EI  L ++    PN     +K+ + F+  
Sbjct: 68  IVYRCKQKGTQKPYALKVLKK-TVDKKIVRTEIGVLLRL--SHPN----IIKLKEIFETP 120

Query: 71  GHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSY 129
             + +  E++ G  +FD + E  Y                         YS         
Sbjct: 121 TEISLVLELVTGGELFDRIVEKGY-------------------------YSERDAADAVK 155

Query: 130 QLIYAVDYNNKK-------KRE----VRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRH 176
           Q++ AV Y ++        K E            +++ DFG +          T+  T  
Sbjct: 156 QILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPG 215

Query: 177 YRAPE-----RYMA---------------------SDDEEHRQLF--------------- 195
           Y APE      Y                        D+   + +F               
Sbjct: 216 YCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWW 275

Query: 196 --------DLISKMLEYEPSERISLSEALRHP 219
                   DL+ K++  +P +R++  +AL+HP
Sbjct: 276 DEVSLNAKDLVRKLIVLDPKKRLTTFQALQHP 307

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 27/283 (9%), Positives = 71/283 (25%), Gaps = 69/283 (24%)

Query: 16  VVYEV-----DSVVALKII----KNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLD 65
              E           + +     +      +  + E+  L+ + G K+     + ++ + 
Sbjct: 93  AYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIF 152

Query: 66  WFDYHGHMCIAFEI-LGLSVFDFLKENNYLPYSLDQVRHMSY-QLIYAKENNYLPYSLDQ 123
            FD          I + L   D    + +  Y   Q    ++ +++ +  + +       
Sbjct: 153 PFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHA 212

Query: 124 VRHMSYQLIYAVDYNNKKKREVRRV--------RRCDIRLIDFGSATFDDEHHSTI---- 171
              ++ Q+I  +   +        +        +R  + L  F     D     +     
Sbjct: 213 RLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGASAVSPIGRG 272

Query: 172 VSTRHYRAPERYMASDDEEHRQLF------------------------------------ 195
            +     A               F                                    
Sbjct: 273 FAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGSEWIFRS 332

Query: 196 ---------DLISKMLEYEPSERISLSEALRHPFFDKLPSSVR 229
                     L+   L Y   +R+   +A+  P +++L + + 
Sbjct: 333 CKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLRTELS 375

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 47.4 bits (112), Expect = 4e-06
 Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 21/188 (11%)

Query: 140 KKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLIS 199
           + K EV R+R     + +   A             +  +  +      DE    +     
Sbjct: 124 QMKEEVLRLRLL-RGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFF 182

Query: 200 KMLEYEPSERISLSEALRHPFFDK-LPSSVRVHAQTQADRILSSVSS--LVMRRV----- 251
                + + +      L H    K L    R+    Q  R+L+S+    LV   +     
Sbjct: 183 LYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDI 242

Query: 252 ---RRCDIRLIDFGSATFDDEHHSTI----VSTRHYRAPEVILELGWAQ-----PCDVWS 299
              +R  + L  F     D     +      +     A  ++              D W+
Sbjct: 243 VLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDTWT 302

Query: 300 IGCIIFEL 307
           +G  I+ +
Sbjct: 303 LGLAIYWI 310

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLP 225
            DL+  +L+  P +RIS  EAL+HP+F    
Sbjct: 260 RDLLQNLLKCNPVQRISAEEALQHPYFSDFC 290

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 46.0 bits (110), Expect = 7e-06
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 256 IRLIDFGSA-TFDDEHH--STIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELY 308
           ++L +FG A  F       S  V T  YR P+V+     ++   D+WS GCI  EL 
Sbjct: 140 LKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELA 196

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLP 225
             L+S+ML Y+P++RIS   AL HPFF  + 
Sbjct: 261 RSLLSQMLHYDPNKRISAKAALAHPFFQDVT 291

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 255 DIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            ++L  FG A             V T H+ APEV+    + +P DVW  G I+F
Sbjct: 171 PVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILF 224

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 45/285 (15%), Positives = 88/285 (30%), Gaps = 96/285 (33%)

Query: 24  VALKIIK------NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF 77
            A+KI+       +     E  + E +    +    P+     V++L+ +   G + + F
Sbjct: 52  FAVKIVDVAKFTSSPGLSTEDLKREASICHMLKH--PH----IVELLETYSSDGMLYMVF 105

Query: 78  EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD 136
           E + G  +                        I  + +    YS     H   Q++ A+ 
Sbjct: 106 EFMDGADLCFE---------------------IVKRADAGFVYSEAVASHYMRQILEALR 144

Query: 137 YNNKK-------KRE----VRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPE- 181
           Y +         K        +     ++L  FG A             V T H+ APE 
Sbjct: 145 YCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEV 204

Query: 182 ----RY-----------------------MASDDEEHRQL------F------------- 195
                Y                         + +     +                    
Sbjct: 205 VKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIKGKYKMNPRQWSHISESAK 264

Query: 196 DLISKMLEYEPSERISLSEALRHPFF-DKLPSSVRVHAQTQADRI 239
           DL+ +ML  +P+ERI++ EAL HP+  ++   + ++H     +++
Sbjct: 265 DLVRRMLMLDPAERITVYEALNHPWLKERDRYAYKIHLPETVEQL 309

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 54.6 bits (132), Expect = 1e-08
 Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 255 DIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +++L DFG A     D     T V T +Y +PE +  + + +  D+WS+GC+++EL
Sbjct: 154 NVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYEL 209

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 44/268 (16%), Positives = 82/268 (30%), Gaps = 94/268 (35%)

Query: 23  VVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHMCIAF 77
           ++  K +      E  ++    E+N L+++  K PN     V+  D         + I  
Sbjct: 33  ILVWKELDYGSMTEAEKQMLVSEVNLLREL--KHPN----IVRYYDRIIDRTNTTLYIVM 86

Query: 78  EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD 136
           E   G  +   + +                     KE  YL    + V  +  QL  A+ 
Sbjct: 87  EYCEGGDLASVITK-------------------GTKERQYLDE--EFVLRVMTQLTLALK 125

Query: 137 YNNKKKREVRRV-------------RRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAP 180
             +++      V              + +++L DFG A     D     T V T +Y +P
Sbjct: 126 ECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSP 185

Query: 181 E-----RY---------------MAS-----DDEEHRQLF-------------------- 195
           E      Y               + +          ++L                     
Sbjct: 186 EQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDELN 245

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDK 223
           ++I++ML  +   R S+ E L +P   +
Sbjct: 246 EIITRMLNLKDYHRPSVEEILENPLILE 273

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 255 DIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            ++L DFG A     + +       T  Y +PEV+ +  + +P D+W+ G I++
Sbjct: 151 AVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILY 204

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 53/260 (20%), Positives = 85/260 (32%), Gaps = 89/260 (34%)

Query: 24  VALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
            A  II   K   +  +    E    + +    PN     V++ D     GH  + F+++
Sbjct: 39  YAAMIINTKKLSARDHQKLEREARICRLLKH--PN----IVRLHDSISEEGHHYLIFDLV 92

Query: 81  -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD--- 136
            G  +F+ +    Y  YS     H   Q+            L+ V H     +   +   
Sbjct: 93  TGGELFEDIVAREY--YSEADASHCIQQI------------LEAVLHCHQMGVVHRNLKP 138

Query: 137 ----YNNKKKREVRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPE-----RY- 183
                 +K K          ++L DFG A     + +       T  Y +PE      Y 
Sbjct: 139 ENLLLASKLKGA-------AVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYG 191

Query: 184 MASD-------------------DEEHRQLF-----------------------DLISKM 201
              D                   DE+  +L+                       DLI+KM
Sbjct: 192 KPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVTPEAKDLINKM 251

Query: 202 LEYEPSERISLSEALRHPFF 221
           L   PS+RI+ +EAL+HP+ 
Sbjct: 252 LTINPSKRITAAEALKHPWI 271

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLP 225
             L+   L  +P+ER++  + L HP+F+ + 
Sbjct: 262 LGLLKGCLHMDPTERLTCEQLLHHPYFENIR 292

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 53.3 bits (129), Expect = 4e-08
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 8/69 (11%)

Query: 252 RRCDIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIF 305
           +   I+L DFG A   T   +++   V+TR YR+PE+++  G  Q   P DVW+IGC+  
Sbjct: 137 KHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLV--GDTQYGPPVDVWAIGCVFA 194

Query: 306 ELYLGITLM 314
           EL  G+ L 
Sbjct: 195 ELLSGVPLW 203

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 38/192 (19%), Positives = 70/192 (36%), Gaps = 63/192 (32%)

Query: 16  VVY-----EVDSVVALKIIKNVEKYRE-----AARLEINALQKIGEKDPNGRHLCVKMLD 65
           VV+     +   +VA+K      +        A R EI  L+++  K PN     V +L+
Sbjct: 18  VVFKCRNRDTGQIVAIKKFLE-SEDDPVIKKIALR-EIRMLKQL--KHPN----LVNLLE 69

Query: 66  WFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVR 125
            F     + + FE              Y  +++          +   +          V+
Sbjct: 70  VFRRKRRLHLVFE--------------YCDHTV-------LHEL---DRYQRGVPEHLVK 105

Query: 126 HMSYQLIYAVDYNNKKKREVRRV-------------RRCDIRLIDFGSA---TFDDEHHS 169
            +++Q + AV++ +K                     +   I+L DFG A   T   +++ 
Sbjct: 106 SITWQTLQAVNFCHK-----HNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYD 160

Query: 170 TIVSTRHYRAPE 181
             V+TR YR+PE
Sbjct: 161 DEVATRWYRSPE 172

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 255 DIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            ++L DFG A       E     + T +Y +PE+     +    D+W++GC+++EL
Sbjct: 163 TVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYEL 218

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 7/53 (13%)

Query: 171 IVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK 223
           I+S         Y  S D     L  L+S++ +  P +R S++  L   F  K
Sbjct: 237 IISGSFPPVSLHY--SYD-----LRSLVSQLFKRNPRDRPSVNSILEKGFIAK 282

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 54.5 bits (132), Expect = 1e-08
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA 236
            DL  K L  +P +R   +E L H FF     + R   + Q 
Sbjct: 284 IDLAKKCLHIDPDKRPFCAELLHHDFFQMDGFAERFSQELQL 325

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 51.8 bits (125), Expect = 1e-07
 Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 8/69 (11%)

Query: 252 RRCDIRLIDFGSA-TFDDEHH--STIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIF 305
           +   ++L DFG A T           V+TR YRAPE+++  G  +     DVW+IGC++ 
Sbjct: 159 QSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLV--GDVKYGKAVDVWAIGCLVT 216

Query: 306 ELYLGITLM 314
           E+++G  L 
Sbjct: 217 EMFMGEPLF 225

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 54.1 bits (131), Expect = 1e-08
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            ++L DFG A    D E       T  Y +PEV+ +  +++P D+W+ G I++
Sbjct: 146 AVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILY 198

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 50/276 (18%), Positives = 87/276 (31%), Gaps = 89/276 (32%)

Query: 24  VALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
            A KII   K   +  +    E    +K+  + PN     V++ D         + F+++
Sbjct: 34  FAAKIINTKKLSARDFQKLEREARICRKL--QHPN----IVRLHDSIQEESFHYLVFDLV 87

Query: 81  -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD--- 136
            G  +F+ +    +  YS     H   Q++ +            + +     I   +   
Sbjct: 88  TGGELFEDIVAREF--YSEADASHCIQQILES------------IAYCHSNGIVHRNLKP 133

Query: 137 ----YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE-----RY-M 184
                 +K K          ++L DFG A    D E       T  Y +PE      Y  
Sbjct: 134 ENLLLASKAKGA-------AVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSK 186

Query: 185 ASD-------------------DEEHRQLF-----------------------DLISKML 202
             D                   DE+  +L+                        LI  ML
Sbjct: 187 PVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTVTPEAKSLIDSML 246

Query: 203 EYEPSERISLSEALRHPFF-DKLPSSVRVHAQTQAD 237
              P +RI+  +AL+ P+  ++   +  +H Q   D
Sbjct: 247 TVNPKKRITADQALKVPWICNRERVASAIHRQDTVD 282

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 254 CDIRLIDFGSATFDDEHH-STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
             ++L DFG A    ++   T   T +Y APEV+    + + CD+WS+G I++
Sbjct: 168 AVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 220

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 8/24 (33%), Positives = 18/24 (75%)

Query: 196 DLISKMLEYEPSERISLSEALRHP 219
            LI  +L+ +P+ER+++++ + HP
Sbjct: 266 QLIRLLLKTDPTERLTITQFMNHP 289

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 51/290 (17%), Positives = 95/290 (32%), Gaps = 93/290 (32%)

Query: 23  VVALKII-KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE-IL 80
           V   K I       +   + EI+ + ++    P      + + D F+    M +  E + 
Sbjct: 78  VFVAKFINTPYPLDKYTVKNEISIMNQL--HHPK----LINLHDAFEDKYEMVLILEFLS 131

Query: 81  GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD---- 136
           G  +FD +   +Y   S  +V +   Q              + ++HM    I  +D    
Sbjct: 132 GGELFDRIAAEDY-KMSEAEVINYMRQA------------CEGLKHMHEHSIVHLDIKPE 178

Query: 137 ---YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE--RY----MA 185
                 KK           +++IDFG AT    DE      +T  + APE          
Sbjct: 179 NIMCETKKAS--------SVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFY 230

Query: 186 SD-------------------DEEHRQLF-----------------------DLISKMLE 203
           +D                    E+  +                         D I  +L+
Sbjct: 231 TDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQ 290

Query: 204 YEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRR 253
            EP +R+++ +AL HP+       ++        RI SS  + + ++++ 
Sbjct: 291 KEPRKRLTVHDALEHPW-------LKGDHSNLTSRIPSSRYNKIRQKIKE 333

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            +++IDFG AT    DE      +T  + APE++         D+W+IG + + L
Sbjct: 189 SVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVL 243

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLP 225
            D +  +L+  P  R+S  +AL HP+F +  
Sbjct: 271 MDFLHGLLQLNPDMRLSAKQALHHPWFAEYY 301

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 256 IRLIDFGSA-TFDDEHH--STIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLGI 311
           ++L DFG A  F    +  S+ V T  YRAP+V++    ++   D+WS GCI+ E+  G 
Sbjct: 147 LKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGK 206

Query: 312 TLM 314
            L 
Sbjct: 207 PLF 209

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 16/71 (22%)

Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQ-----------PCDVWS 299
           ++LIDFG A             + V T +Y  PE I ++  ++             DVWS
Sbjct: 146 LKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 205

Query: 300 IGCIIFELYLG 310
           +GCI++ +  G
Sbjct: 206 LGCILYYMTYG 216

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLV 247
           D++   L+ +P +RIS+ E L HP+       V   A+   + +   +  LV
Sbjct: 252 DVLKCCLKRDPKQRISIPELLAHPYVQIQTHPVNQMAKGTTEEMKYVLGQLV 303

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 27/186 (14%), Positives = 64/186 (34%), Gaps = 50/186 (26%)

Query: 16  VVYEVDS----VVALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD 68
            V++V +    + A+K +   +   +  ++ R EI  L K+  +  + +   +++ D+  
Sbjct: 24  KVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL--QQHSDK--IIRLYDYEI 79

Query: 69  YHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMS 128
              ++ +  E   + +  +LK+   +                            + +   
Sbjct: 80  TDQYIYMVMECGNIDLNSWLKKKKSID-------------------------PWERKSYW 114

Query: 129 YQLIYAVDYNNKKKREVRR--------VRRCDIRLIDFGSATF-----DDEHHSTIVSTR 175
             ++ AV   + +   V          +    ++LIDFG A             + V T 
Sbjct: 115 KNMLEAVHTIH-QHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTV 173

Query: 176 HYRAPE 181
           +Y  PE
Sbjct: 174 NYMPPE 179

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 29/87 (33%)

Query: 254 CDIRLIDFGSA--------------------TFDDEHHSTI----VSTRHYRAPEVILEL 289
           C +++ DFG +                    T + +    I    V+TR YRAPE++L  
Sbjct: 146 CHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILL-- 203

Query: 290 GWA---QPCDVWSIGCIIFELYLGITL 313
           G     +  D+WS+GCI+ E+  G  +
Sbjct: 204 GSTKYTKGIDMWSLGCILGEILCGKPI 230

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 13/29 (44%), Positives = 22/29 (75%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           DL+ K+L++ P++RIS ++AL+HPF    
Sbjct: 307 DLLDKLLQFNPNKRISANDALKHPFVSIF 335

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLP 225
             L+ +ML + P +RIS   AL+H +  K  
Sbjct: 274 AQLLLEMLTFNPHKRISAFRALQHSYLHKDE 304

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 256 IRLIDFGSA-TFDDEHHST-IVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL 313
           ++L DFG A  +  +   T +V T  YRAPEV+L+  +A P D+WS+GCI  E++    L
Sbjct: 159 VKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPL 218

Query: 314 M 314
            
Sbjct: 219 F 219

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 54.1 bits (131), Expect = 2e-08
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLP 225
            DL+ K L + P++RIS   AL HP+F  L 
Sbjct: 274 KDLLLKCLTFNPAKRISAYSALSHPYFQDLE 304

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 53.0 bits (128), Expect = 5e-08
 Identities = 25/57 (43%), Positives = 36/57 (63%), Gaps = 2/57 (3%)

Query: 256 IRLIDFGSA-TFDDEHHST-IVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I+L DFG A  +  +   T +V T  YRAPEV+L+  +A P D+WS+GCI  E++  
Sbjct: 159 IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRR 215

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 46/291 (15%), Positives = 93/291 (31%), Gaps = 107/291 (36%)

Query: 23  VVALKII--KNVEKYREAARL--EINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
           V A KI+    + K  +  ++  EI+  + +     +     V    +F+ +  + +  E
Sbjct: 42  VFAGKIVPKSLLLKPHQREKMSMEISIHRSL--AHQH----VVGFHGFFEDNDFVFVVLE 95

Query: 79  I-LGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY 137
           +    S+ +  K    L                         +  + R+   Q++    Y
Sbjct: 96  LCRRRSLLELHKRRKAL-------------------------TEPEARYYLRQIVLGCQY 130

Query: 138 NNKKKREVRRV-------------RRCDIRLIDFGSAT---FDDEHHSTIVSTRHYRAPE 181
            ++      RV                ++++ DFG AT   +D E    +  T +Y APE
Sbjct: 131 LHR-----NRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPE 185

Query: 182 RYMAS---------------------------DDEEHRQLF------------------- 195
             + S                           +    ++ +                   
Sbjct: 186 --VLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKHINPVAA 243

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDK--LPSSVRVHAQTQADRILSSVS 244
            LI KML+ +P+ R +++E L   FF    +P+ + +   T   R   + S
Sbjct: 244 SLIQKMLQTDPTARPTINELLNDEFFTSGYIPARLPITCLTIPPRFSIAPS 294

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++++ DFG AT   +D E    +  T +Y APEV+ + G +   DVWSIGCI++ L +G
Sbjct: 153 EVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVG 211

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 255 DIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +I++IDFG A     D++   T   T HY APE++ + G+ + CD+WS+G I++ +
Sbjct: 147 EIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTM 202

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 8/77 (10%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFF--DKLPSSVRVHAQTQADRILSSVSSLV------ 247
           DLI  +L  +P++R+ +S    + +       SS  +          ++V + V      
Sbjct: 249 DLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQLSSNPLMTPDILGSSGAAVHTCVKATFHA 308

Query: 248 MRRVRRCDIRLIDFGSA 264
             + +R    L +   A
Sbjct: 309 FNKYKREGFCLQNVDKA 325

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 35/284 (12%), Positives = 73/284 (25%), Gaps = 114/284 (40%)

Query: 23  VVALKIIKNVEKYREAARLEINALQKIGEKDPN---------GRHLCVKMLDWFDYHGHM 73
             A+K I++ E+       E+  L  +                R   VK +        +
Sbjct: 33  YYAIKKIRHTEEKLSTILSEVMLLASL--NHQYVVRYYAAWLERRNFVKPMTAVKKKSTL 90

Query: 74  CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLI 132
            I  E     +++D +   N                        L    D+   +  Q++
Sbjct: 91  FIQMEYCENGTLYDLIHSEN------------------------LNQQRDEYWRLFRQIL 126

Query: 133 YAVDY--NNKKKREVRR---------VRRCDIRLIDFGSATF-----------------D 164
            A+ Y  +      + R             ++++ DFG A                    
Sbjct: 127 EALSYIHSQGI---IHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGS 183

Query: 165 DEHHSTIVSTRHYRAPE------RY---------------MA---SDDEEHRQLF----- 195
            ++ ++ + T  Y A E       Y               M    S   E   +      
Sbjct: 184 SDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTGMERVNILKKLRS 243

Query: 196 ------------------DLISKMLEYEPSERISLSEALRHPFF 221
                              +I  +++++P++R      L   + 
Sbjct: 244 VSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWL 287

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 51.2 bits (123), Expect = 2e-07
 Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 18/71 (25%)

Query: 255 DIRLIDFGSATF-----------------DDEHHSTIVSTRHYRAPEVILELGWA-QPCD 296
           ++++ DFG A                     ++ ++ + T  Y A EV+   G   +  D
Sbjct: 154 NVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKID 213

Query: 297 VWSIGCIIFEL 307
           ++S+G I FE+
Sbjct: 214 MYSLGIIFFEM 224

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 30/96 (31%)

Query: 254 CDIRLIDFGSA-TFDDEHHSTI------------------------VSTRHYRAPEVILE 288
           C +++ DFG A T + E  + I                        V TR YRAPE+IL 
Sbjct: 166 CSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELIL- 224

Query: 289 LGWA---QPCDVWSIGCIIFELYLGITLMARKTKTK 321
                  +  D+WS GCI  EL   +         +
Sbjct: 225 -LQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNR 259

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 10/29 (34%), Positives = 21/29 (72%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
           +L+  ML++ P++RI++ +AL HP+   +
Sbjct: 340 NLLESMLKFNPNKRITIDQALDHPYLKDV 368

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)

Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWA---QPCDVWSIGCIIFEL 307
           C I++ DFG +    E     T+  T  Y APEV++ +G A   +  D WS+G I+F  
Sbjct: 279 CLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFIC 337

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 52.8 bits (127), Expect = 7e-08
 Identities = 52/283 (18%), Positives = 81/283 (28%), Gaps = 107/283 (37%)

Query: 24  VALKIIK---------NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC 74
           VA++II                     EI  L+K+    P      +K+ ++FD      
Sbjct: 163 VAIRIISKRKFAIGSAREADPALNVETEIEILKKL--NHPC----IIKIKNFFD-AEDYY 215

Query: 75  IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIY 133
           I  E++ G  +FD +  N                                 +   YQ++ 
Sbjct: 216 IVLELMEGGELFDKVVGNKR-------------------------LKEATCKLYFYQMLL 250

Query: 134 AVDYNNKK-------KRE----VRRVRRCDIRLIDFGSATFDDEHH--STIVSTRHYRAP 180
           AV Y ++        K E      +   C I++ DFG +    E     T+  T  Y AP
Sbjct: 251 AVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAP 310

Query: 181 E--------RYMA---------------------SDDEEHRQLF---------------- 195
           E         Y                       S+      L                 
Sbjct: 311 EVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYNFIPEVWA 370

Query: 196 -------DLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH 231
                  DL+ K+L  +P  R +  EALRHP+        +  
Sbjct: 371 EVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQ 413

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 54.1 bits (130), Expect = 3e-08
 Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 23/119 (19%)

Query: 256 IRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQP--------CDVWSIGCIIF 305
            +L DFG+A    DDE   ++  T  Y  P++       +          D+WSIG   +
Sbjct: 155 YKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFY 214

Query: 306 ELYLG-------------ITLMARKTKTKYFYHGKLDWDEKGTAGRYVRENCKPLHHSP 351
               G               +M +    K           +     +  +       S 
Sbjct: 215 HAATGSLPFRPFEGPRRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSR 273

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 46.4 bits (110), Expect = 8e-06
 Identities = 26/177 (14%), Positives = 55/177 (31%), Gaps = 47/177 (26%)

Query: 24  VALKII--KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--HMCIAFEI 79
            A+K+    +  +  +    E   L+K+     N     VK+    +     H  +  E 
Sbjct: 37  FAIKVFNNISFLRPVDVQMREFEVLKKL--NHKN----IVKLFAIEEETTTRHKVLIMEF 90

Query: 80  L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYN 138
               S++  L+E +                      N       +   +   ++  +++ 
Sbjct: 91  CPCGSLYTVLEEPS----------------------NAYGLPESEFLIVLRDVVGGMNHL 128

Query: 139 NKKK------------REVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE 181
            +              R +    +   +L DFG+A    DDE   ++  T  Y  P+
Sbjct: 129 RENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPD 185

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 16/71 (22%)

Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQ-----------PCDVWS 299
           ++LIDFG A             + V T +Y  PE I ++  ++             DVWS
Sbjct: 165 LKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 224

Query: 300 IGCIIFELYLG 310
           +GCI++ +  G
Sbjct: 225 LGCILYYMTYG 235

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT 234
           D++   L+ +P +RIS+ E L HP+       V   A+ 
Sbjct: 271 DVLKCCLKRDPKQRISIPELLAHPYVQIQTHPVNQMAKG 309

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 46.2 bits (110), Expect = 7e-06
 Identities = 27/186 (14%), Positives = 64/186 (34%), Gaps = 50/186 (26%)

Query: 16  VVYEVDS----VVALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD 68
            V++V +    + A+K +   +   +  ++ R EI  L K+  +  + +   +++ D+  
Sbjct: 43  KVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL--QQHSDK--IIRLYDYEI 98

Query: 69  YHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMS 128
              ++ +  E   + +  +LK+   +                            + +   
Sbjct: 99  TDQYIYMVMECGNIDLNSWLKKKKSID-------------------------PWERKSYW 133

Query: 129 YQLIYAVDYNNKKKREVRR--------VRRCDIRLIDFGSATF-----DDEHHSTIVSTR 175
             ++ AV   + +   V          +    ++LIDFG A             + V T 
Sbjct: 134 KNMLEAVHTIH-QHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTV 192

Query: 176 HYRAPE 181
           +Y  PE
Sbjct: 193 NYMPPE 198

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 55/276 (19%), Positives = 92/276 (33%), Gaps = 86/276 (31%)

Query: 23  VVALKII-KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL- 80
            +A KII     K +E  + EI+ + ++     N     +++ D F+    + +  E + 
Sbjct: 116 KLAAKIIKTRGMKDKEEVKNEISVMNQL--DHAN----LIQLYDAFESKNDIVLVMEYVD 169

Query: 81  GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD---- 136
           G  +FD + + +Y   +         Q+             + +RHM    I  +D    
Sbjct: 170 GGELFDRIIDESY-NLTELDTILFMKQI------------CEGIRHMHQMYILHLDLKPE 216

Query: 137 ---YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE--RY----MA 185
                N+            I++IDFG A      E       T  + APE   Y      
Sbjct: 217 NILCVNRDA--------KQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFP 268

Query: 186 SD-------------------DEEHRQLF-----------------------DLISKMLE 203
           +D                    +   +                         + ISK+L 
Sbjct: 269 TDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDISEEAKEFISKLLI 328

Query: 204 YEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI 239
            E S RIS SEAL+HP+        R+ AQ + +R 
Sbjct: 329 KEKSWRISASEALKHPWLSDHKLHSRLSAQKKKNRG 364

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            I++IDFG A      E       T  + APEV+     + P D+WS+G I +
Sbjct: 227 QIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAY 279

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 53.4 bits (129), Expect = 4e-08
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLP 225
            DLI  +  + P  RI+ ++AL+  +F   P
Sbjct: 269 LDLIQGLFLFNPCARITATQALKMKYFSNRP 299

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 8/66 (12%)

Query: 256 IRLIDFGSA-TFDDEHH--STIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIFELYL 309
           ++L DFG A +F   +   +  V TR YRAPE++   G        D+W++GCI+ EL L
Sbjct: 151 LKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLF--GARMYGVGVDMWAVGCILAELLL 208

Query: 310 GITLMA 315
            +  + 
Sbjct: 209 RVPFLP 214

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 256 IRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
           ++L DFG A         +T   T +Y APEV+    + + CD+WS+G I++
Sbjct: 203 LKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMY 254

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 9/24 (37%), Positives = 18/24 (75%)

Query: 196 DLISKMLEYEPSERISLSEALRHP 219
            LI  +L+ EP++R++++E + HP
Sbjct: 300 MLIRNLLKTEPTQRMTITEFMNHP 323

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 50/258 (19%), Positives = 83/258 (32%), Gaps = 87/258 (33%)

Query: 24  VALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
            A+K+I       K       E+  L+K+    PN     +K+ +  +      I  E+ 
Sbjct: 50  YAVKVINKASAKNKDTSTILREVELLKKLDH--PN----IMKLFEILEDSSSFYIVGELY 103

Query: 81  -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD--- 136
            G  +FD + +     +S      +  Q+               + +M    I   D   
Sbjct: 104 TGGELFDEIIKRKR--FSEHDAARIIKQVFSG------------ITYMHKHNIVHRDLKP 149

Query: 137 ----YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE----RY-MA 185
                 +K+K        CDI++IDFG +T    +      + T +Y APE     Y   
Sbjct: 150 ENILLESKEKD-------CDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEK 202

Query: 186 SD-------------------DEEHRQLF-----------------------DLISKMLE 203
            D                    +    +                        DLI KML 
Sbjct: 203 CDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTISDDAKDLIRKMLT 262

Query: 204 YEPSERISLSEALRHPFF 221
           + PS RI+ ++ L HP+ 
Sbjct: 263 FHPSLRITATQCLEHPWI 280

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           DI++IDFG +T    +      + T +Y APEV L   + + CDVWS G I++ L
Sbjct: 162 DIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEV-LRGTYDEKCDVWSAGVILYIL 215

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 256 IRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
           IR+ DFG A     ++    T   T ++ APEV+   G+   CD+WS+G +++
Sbjct: 159 IRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLY 211

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 49/273 (17%), Positives = 92/273 (33%), Gaps = 101/273 (36%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-GL 82
            A+KII   +K +     EI  L + G + PN     + + D +D   ++ +  E++ G 
Sbjct: 50  FAVKII---DKSKRDPTEEIEILLRYG-QHPN----IITLKDVYDDGKYVYVVTELMKGG 101

Query: 83  SVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQ-----------L 131
            + D +    +  +S  +   + + +               V ++  Q           +
Sbjct: 102 ELLDKILRQKF--FSEREASAVLFTITKT------------VEYLHAQGVVHRDLKPSNI 147

Query: 132 IYAVDYNNKKKREVRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPE-----RY 183
           +Y  +  N +           IR+ DFG A     ++    T   T ++ APE      Y
Sbjct: 148 LYVDESGNPES----------IRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGY 197

Query: 184 -----------------------MASDDEEHRQLF-----------------------DL 197
                                      D+   ++                        DL
Sbjct: 198 DAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWNSVSDTAKDL 257

Query: 198 ISKMLEYEPSERISLSEALRHPFF---DKLPSS 227
           +SKML  +P +R++ +  LRHP+    D+LP  
Sbjct: 258 VSKMLHVDPHQRLTAALVLRHPWIVHWDQLPQY 290

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 40/275 (14%), Positives = 80/275 (29%), Gaps = 85/275 (30%)

Query: 23  VVALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI 79
             A K +   +  +  R     EI  L+   +  P      + + + ++    + +  E 
Sbjct: 56  EYAAKFLKKRRRGQDCRAEILHEIAVLELA-KSCPR----VINLHEVYENTSEIILILEY 110

Query: 80  L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD-- 136
             G  +F           S + V  +  Q+            L+ V ++    I  +D  
Sbjct: 111 AAGGEIFSLCLPELAEMVSENDVIRLIKQI------------LEGVYYLHQNNIVHLDLK 158

Query: 137 -----YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE--RY---- 183
                 ++            DI+++DFG +           I+ T  Y APE   Y    
Sbjct: 159 PQNILLSSIYPL-------GDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPIT 211

Query: 184 MASD-------------------DEEHRQLF-----------------------DLISKM 201
            A+D                    E++++ +                       D I  +
Sbjct: 212 TATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYSEETFSSVSQLATDFIQSL 271

Query: 202 LEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA 236
           L   P +R +    L H +  +       H +  +
Sbjct: 272 LVKNPEKRPTAEICLSHSWLQQWDFENLFHPEETS 306

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 254 CDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            DI+++DFG +           I+ T  Y APE++         D+W+IG I +
Sbjct: 171 GDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAY 224

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 52.9 bits (127), Expect = 5e-08
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 26/96 (27%)

Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQ-----------PCDVWS 299
           ++LIDFG A             + V   +Y  PE I ++  ++             DVWS
Sbjct: 193 LKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWS 252

Query: 300 IGCIIFELYLG----------ITLMARKTKTKYFYH 325
           +GCI++ +  G          I+ +       +   
Sbjct: 253 LGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIE 288

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 47.5 bits (113), Expect = 3e-06
 Identities = 14/52 (26%), Positives = 25/52 (48%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLV 247
           D++   L+ +P +RIS+ E L HP+       V   A+   + +   +  LV
Sbjct: 299 DVLKCCLKRDPKQRISIPELLAHPYVQIQTHPVNQMAKGTTEEMKYVLGQLV 350

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 44.8 bits (106), Expect = 2e-05
 Identities = 26/190 (13%), Positives = 63/190 (33%), Gaps = 58/190 (30%)

Query: 16  VVYEVDS----VVALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD 68
            V++V +    + A+K +   +   +  ++ R EI  L K+  +  + +   +++ D+  
Sbjct: 71  KVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKL--QQHSDK--IIRLYDYEI 126

Query: 69  YHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMS 128
              ++ +  E   + +  +LK+   +                            + +   
Sbjct: 127 TDQYIYMVMECGNIDLNSWLKKKKSID-------------------------PWERKSYW 161

Query: 129 YQLIYAVDYNNKKKREVRRVRRCD------------IRLIDFGSATF-----DDEHHSTI 171
             ++ AV   ++       +   D            ++LIDFG A             + 
Sbjct: 162 KNMLEAVHTIHQH-----GIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQ 216

Query: 172 VSTRHYRAPE 181
           V   +Y  PE
Sbjct: 217 VGAVNYMPPE 226

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 52.4 bits (126), Expect = 6e-08
 Identities = 42/296 (14%), Positives = 83/296 (28%), Gaps = 114/296 (38%)

Query: 16  VVYEV-----DSVVALKIIK--NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF- 67
           VV+E      D   A+K I+  N E  RE    E+ AL K+  + P      V+  + + 
Sbjct: 20  VVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKL--EHPG----IVRYFNAWL 73

Query: 68  -----------DYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENN 115
                          ++ I  ++    ++ D++     +                     
Sbjct: 74  EKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEER------------------ 115

Query: 116 YLPYSLDQVRHMSYQLIYAVDY--NNK------KKREVRRVRRCDIRLIDFGSATFDD-- 165
                     H+  Q+  AV++  +        K   +       +++ DFG  T  D  
Sbjct: 116 ----ERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQD 171

Query: 166 -------------EHHSTIVSTRHYRAPE------------------------------- 181
                          H+  V T+ Y +PE                               
Sbjct: 172 EEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQM 231

Query: 182 ------------RYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP 225
                       ++     +++   + ++  ML   P ER      + +  F+ L 
Sbjct: 232 ERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDLD 287

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 15/68 (22%)

Query: 255 DIRLIDFGSATFDD---------------EHHSTIVSTRHYRAPEVILELGWAQPCDVWS 299
            +++ DFG  T  D                 H+  V T+ Y +PE I    ++   D++S
Sbjct: 156 VVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFS 215

Query: 300 IGCIIFEL 307
           +G I+FEL
Sbjct: 216 LGLILFEL 223

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 52.7 bits (127), Expect = 6e-08
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 254 CDIRLIDFGSATFDDEHH--STIVSTRHYRAPEVILELGWA---QPCDVWSIGCIIF 305
           C I++ DFG +    E     T+  T  Y APEV++ +G A   +  D WS+G I+F
Sbjct: 154 CLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILF 210

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 36/203 (17%), Positives = 59/203 (29%), Gaps = 69/203 (33%)

Query: 119 YSLDQVRHMSYQLIYAVDYNNKK-------KRE----VRRVRRCDIRLIDFGSATFDDEH 167
                 +   YQ++ AV Y ++        K E      +   C I++ DFG +    E 
Sbjct: 111 LKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGET 170

Query: 168 H--STIVSTRHYRAPE--------RYMA---------------------SDDEEHRQLF- 195
               T+  T  Y APE         Y                       S+      L  
Sbjct: 171 SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKD 230

Query: 196 ----------------------DLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH-- 231
                                 DL+ K+L  +P  R +  EALRHP+        +    
Sbjct: 231 QITSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDEDMKRKFQDL 290

Query: 232 --AQTQADRILSSVSSLVMRRVR 252
              + ++  +   ++     R R
Sbjct: 291 LSEENESTALPQVLAQPSTSRKR 313

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 50/268 (18%), Positives = 94/268 (35%), Gaps = 104/268 (38%)

Query: 23  VVALKII--KNVEKYREAARL--EINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
            VA+K+I  K + K     R+  E+    ++  K P+     +++ ++F+   ++ +  E
Sbjct: 38  EVAIKMIDKKAMYKAGMVQRVQNEVKIHCQL--KHPS----ILELYNYFEDSNYVYLVLE 91

Query: 79  IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY 137
           +     +  +LK            +  S       E        ++ RH  +Q+I  + Y
Sbjct: 92  MCHNGEMNRYLKNRV---------KPFS-------E--------NEARHFMHQIITGMLY 127

Query: 138 NNKKKREVRRV-------------RRCDIRLIDFGSAT---FDDEHHSTIVSTRHYRAPE 181
            +        +             R  +I++ DFG AT      E H T+  T +Y +PE
Sbjct: 128 LHSHG-----ILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPE 182

Query: 182 RYMAS---------------------------DDEEHRQLF------------------- 195
             +A+                           D +  +                      
Sbjct: 183 --IATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADYEMPSFLSIEAK 240

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDK 223
           DLI ++L   P++R+SLS  L HPF  +
Sbjct: 241 DLIHQLLRRNPADRLSLSSVLDHPFMSR 268

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 255 DIRLIDFGSAT---FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +I++ DFG AT      E H T+  T +Y +PE+          DVWS+GC+ + L +G
Sbjct: 150 NIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIG 208

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 52.2 bits (126), Expect = 7e-08
 Identities = 40/254 (15%), Positives = 85/254 (33%), Gaps = 85/254 (33%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE-ILGL 82
              K +K     +   + EI+ L        N     + + + F+    + + FE I GL
Sbjct: 33  YMAKFVKVKGTDQVLVKKEISILNIARH--RN----ILHLHESFESMEELVMIFEFISGL 86

Query: 83  SVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD------ 136
            +F+ +  + +   +  ++    +Q+             + ++ +    I   D      
Sbjct: 87  DIFERINTSAF-ELNEREIVSYVHQV------------CEALQFLHSHNIGHFDIRPENI 133

Query: 137 -YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE--RY----MASD 187
            Y  ++           I++I+FG A      ++   + +   Y APE  ++     A+D
Sbjct: 134 IYQTRRSS--------TIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATD 185

Query: 188 -------------------DEEHRQLF-----------------------DLISKMLEYE 205
                               E ++Q+                        D + ++L  E
Sbjct: 186 MWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKE 245

Query: 206 PSERISLSEALRHP 219
              R++ SEAL+HP
Sbjct: 246 RKSRMTASEALQHP 259

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            I++I+FG A      ++   + +   Y APEV      +   D+WS+G +++
Sbjct: 142 TIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVY 194

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 52.5 bits (126), Expect = 7e-08
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 256 IRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQP--------CDVWSIGCIIF 305
            +L DFG+A    DDE   ++  T  Y  P++       +          D+WSIG   +
Sbjct: 155 YKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFY 214

Query: 306 ELYLG 310
               G
Sbjct: 215 HAATG 219

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 26/178 (14%), Positives = 56/178 (31%), Gaps = 47/178 (26%)

Query: 23  VVALKII--KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--HMCIAFE 78
           + A+K+    +  +  +    E   L+K+     N     VK+    +     H  +  E
Sbjct: 36  LFAIKVFNNISFLRPVDVQMREFEVLKKL--NHKN----IVKLFAIEEETTTRHKVLIME 89

Query: 79  IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY 137
                S++  L+E +                      N       +   +   ++  +++
Sbjct: 90  FCPCGSLYTVLEEPS----------------------NAYGLPESEFLIVLRDVVGGMNH 127

Query: 138 NNKKK------------REVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE 181
             +              R +    +   +L DFG+A    DDE   ++  T  Y  P+
Sbjct: 128 LRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPD 185

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 52.1 bits (126), Expect = 8e-08
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKL 224
            DL+SKML+ +P++RI+  +AL H +F + 
Sbjct: 258 IDLLSKMLKLDPNQRITAKQALEHAYFKEN 287

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 256 IRLIDFGSA-TFDDEHH--STIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           +++ DFG A  F       +  + T  YRAP+V++    ++   D+WS+GCI  E+  G
Sbjct: 139 LKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNG 197

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 52.4 bits (126), Expect = 8e-08
 Identities = 53/282 (18%), Positives = 92/282 (32%), Gaps = 96/282 (34%)

Query: 16  VVYEVDS-----VVALKIIK-------NVEKYREAARLEINALQKIGEKDPNGRHLCVKM 63
           +V +          A K IK            RE    E++ L+++    PN     + +
Sbjct: 27  IVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQV--LHPN----IITL 80

Query: 64  LDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLD 122
            D ++    + +  E++ G  +FDFL +      S ++      Q+            LD
Sbjct: 81  HDVYENRTDVVLILELVSGGELFDFLAQKES--LSEEEATSFIKQI------------LD 126

Query: 123 QVRHMSYQLIYAVD-------YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVS 173
            V ++  + I   D         +K            I+LIDFG A    D      I  
Sbjct: 127 GVNYLHTKKIAHFDLKPENIMLLDKNIPI------PHIKLIDFGLAHEIEDGVEFKNIFG 180

Query: 174 TRHYRAPE--RY----MASD-------------------DEEHRQLF------------- 195
           T  + APE   Y    + +D                    +  ++               
Sbjct: 181 TPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEE 240

Query: 196 ----------DLISKMLEYEPSERISLSEALRHPFFDKLPSS 227
                     D I K+L  E  +R+++ EALRHP+   + + 
Sbjct: 241 FFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDTQ 282

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            I+LIDFG A    D      I  T  + APE++         D+WSIG I +
Sbjct: 157 HIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITY 209

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 52.2 bits (125), Expect = 9e-08
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 252 RRCDIRLIDFG-SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            R +I+L DFG S    D   ++ V TR Y +PE +    ++   D+WS+G  + E+ +G
Sbjct: 167 SRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 226

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            I+LIDFG A    D      I  T  + APE++         D+WSIG I +
Sbjct: 157 HIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITY 209

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 51/269 (18%), Positives = 87/269 (32%), Gaps = 91/269 (33%)

Query: 24  VALKIIK-------NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA 76
            A K IK            RE    E++ L+++     N     + + D ++    + + 
Sbjct: 40  YAAKFIKKRQSRASRRGVSREEIEREVSILRQV--LHHN----VITLHDVYENRTDVVLI 93

Query: 77  FE-ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAV 135
            E + G  +FDFL +      S ++      Q+            LD V ++  + I   
Sbjct: 94  LELVSGGELFDFLAQKES--LSEEEATSFIKQI------------LDGVNYLHTKKIAHF 139

Query: 136 D-------YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE--RY- 183
           D         +K            I+LIDFG A    D      I  T  + APE   Y 
Sbjct: 140 DLKPENIMLLDKNIPI------PHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYE 193

Query: 184 ---MASD-------------------DEEHRQLF-----------------------DLI 198
              + +D                    +  ++                         D I
Sbjct: 194 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFFSHTSELAKDFI 253

Query: 199 SKMLEYEPSERISLSEALRHPFFDKLPSS 227
            K+L  E  +R+++ EALRHP+   + + 
Sbjct: 254 RKLLVKETRKRLTIQEALRHPWITPVDNQ 282

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            I+LIDFG A           I  T  + APE++         D+WSIG I +
Sbjct: 150 RIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITY 202

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 48.7 bits (117), Expect = 9e-07
 Identities = 50/261 (19%), Positives = 84/261 (32%), Gaps = 91/261 (34%)

Query: 24  VALKIIK-------NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA 76
            A K IK            RE    E+N L++I  + PN     + + D F+    + + 
Sbjct: 33  YAAKFIKKRRLSSSRRGVSREEIEREVNILREI--RHPN----IITLHDIFENKTDVVLI 86

Query: 77  FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAV 135
            E++ G  +FDFL E      + D+      Q+            LD V ++  + I   
Sbjct: 87  LELVSGGELFDFLAEKES--LTEDEATQFLKQI------------LDGVHYLHSKRIAHF 132

Query: 136 D-------YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE----- 181
           D         +K            I+LIDFG A           I  T  + APE     
Sbjct: 133 DLKPENIMLLDKNVPN------PRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYE 186

Query: 182 RY-MASD-------------------DEEHRQLF-----------------------DLI 198
              + +D                    E  ++                         D I
Sbjct: 187 PLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFI 246

Query: 199 SKMLEYEPSERISLSEALRHP 219
            ++L  +P  R++++++L H 
Sbjct: 247 RRLLVKDPKRRMTIAQSLEHS 267

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 255 DIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            ++L D G   F         ++V T +Y +PE I E G+    D+WS+GC+++E+
Sbjct: 174 VVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEM 229

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 50.9 bits (122), Expect = 2e-07
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 254 CDIRLIDFGSA--------TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
               L DFG A                 I  T  + APEV++        D+WS  C++ 
Sbjct: 188 SRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMML 247

Query: 306 ELYLG 310
            +  G
Sbjct: 248 HMLNG 252

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 14/31 (45%), Positives = 19/31 (61%)

Query: 195 FDLISKMLEYEPSERISLSEALRHPFFDKLP 225
            DLI K+L  +P++RI   +AL H FF   P
Sbjct: 289 LDLIDKLLVLDPAQRIDSDDALNHDFFWSDP 319

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 8/67 (11%)

Query: 256 IRLIDFGSA-TFDDEHHSTI------VSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFEL 307
           ++L DFG A  F    +S        V T  YR PE++L E  +  P D+W  GCI+ E+
Sbjct: 163 LKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEM 222

Query: 308 YLGITLM 314
           +    +M
Sbjct: 223 WTRSPIM 229

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF 305
            I++IDFG A           I  T  + APE++         D+WSIG I +
Sbjct: 156 RIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITY 208

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 43/277 (15%), Positives = 90/277 (32%), Gaps = 91/277 (32%)

Query: 24  VALKIIK-------NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA 76
            A K IK            RE    E++ L++I  + PN     + + + ++    + + 
Sbjct: 39  YAAKFIKKRRTKSSRRGVSREDIEREVSILKEI--QHPN----VITLHEVYENKTDVILI 92

Query: 77  FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAV 135
            E++ G  +FDFL E      + ++      Q+            L+ V ++    I   
Sbjct: 93  LELVAGGELFDFLAEKES--LTEEEATEFLKQI------------LNGVYYLHSLQIAHF 138

Query: 136 D-------YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE----- 181
           D         ++   +        I++IDFG A           I  T  + APE     
Sbjct: 139 DLKPENIMLLDRNVPK------PRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYE 192

Query: 182 RY-MASD-------------------DEEHRQLF-----------------------DLI 198
              + +D                    +  ++                         D I
Sbjct: 193 PLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSALAKDFI 252

Query: 199 SKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ 235
            ++L  +P +R+++ ++L+HP+     +   +  +  
Sbjct: 253 RRLLVKDPKKRMTIQDSLQHPWIKPKDTQQALSRKAS 289

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 255 DIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +++LIDFG        +       T  + APEV          D+WS+G + + L
Sbjct: 295 ELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYIL 349

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 49.8 bits (119), Expect = 8e-07
 Identities = 46/289 (15%), Positives = 86/289 (29%), Gaps = 93/289 (32%)

Query: 24  VALKII-KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-G 81
            A K +    E  +E  R EI  +  +  + P      V + D F+    M + +E + G
Sbjct: 185 FAAKFVMTPHESDKETVRKEIQTMSVL--RHPT----LVNLHDAFEDDNEMVMIYEFMSG 238

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD----- 136
             +F+ + + +    S D+      Q+               + HM       +D     
Sbjct: 239 GELFEKVADEHNK-MSEDEAVEYMRQV------------CKGLCHMHENNYVHLDLKPEN 285

Query: 137 --YNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE--RY----MAS 186
             +  K+          +++LIDFG        +       T  + APE          +
Sbjct: 286 IMFTTKRS--------NELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYT 337

Query: 187 D-------------------DEEHRQLF-----------------------DLISKMLEY 204
           D                    E   +                         D I K+L  
Sbjct: 338 DMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLA 397

Query: 205 EPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRR 253
           +P+ R+++ +AL HP+       +        D  + S     +R   +
Sbjct: 398 DPNTRMTIHQALEHPW-------LTPGNAPGRDSQIPSSRYTKIRDSIK 439

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 51.0 bits (122), Expect = 3e-07
 Identities = 11/33 (33%), Positives = 22/33 (66%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFFDKLP 225
           + F L+ K+L  +P +RI+  +A++ P+F + P
Sbjct: 309 KAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDP 341

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 256 IRLIDFGSA-TFDDE-----HHSTIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIFE 306
           +++ D G A  F+           +V T  YRAPE++L  G        D+W+IGCI  E
Sbjct: 171 VKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLL--GARHYTKAIDIWAIGCIFAE 228

Query: 307 LYLGITLM 314
           L     + 
Sbjct: 229 LLTSEPIF 236

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)

Query: 256 IRLIDFGSA-----TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG+A            ++ V T  Y +PE++ E    +  D+W++GCII++L  G
Sbjct: 169 IQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAG 228

Query: 311 IT 312
           + 
Sbjct: 229 LP 230

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 254 CDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWA------QPCDVWSIGCIIF 305
            +I+L DFG +      E    +  T  Y APE+I            +  D+WS G I++
Sbjct: 161 MNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMY 220

Query: 306 EL 307
            L
Sbjct: 221 TL 222

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 26/127 (20%), Positives = 37/127 (29%), Gaps = 56/127 (44%)

Query: 151 CDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE-----------RY-MASD--------- 187
            +I+L DFG +      E    +  T  Y APE            Y    D         
Sbjct: 161 MNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMY 220

Query: 188 ----------DEEHRQLF-----------------------DLISKMLEYEPSERISLSE 214
                       +   +                        DL+S+ L  +P +R +  E
Sbjct: 221 TLLAGSPPFWHRKQMLMLRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEE 280

Query: 215 ALRHPFF 221
           AL HPFF
Sbjct: 281 ALAHPFF 287

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 49.9 bits (119), Expect = 5e-07
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 15/69 (21%)

Query: 255 DIRLIDFGSAT---------------FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWS 299
            +++ DFG  T                    H+  V T+ Y +PE I    ++   D++S
Sbjct: 202 VVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFS 261

Query: 300 IGCIIFELY 308
           +G I+FEL 
Sbjct: 262 LGLILFELL 270

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 8/37 (21%), Positives = 19/37 (51%)

Query: 188 DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL 224
            +++ Q   ++  ML   P+ER   ++ + +  F+ L
Sbjct: 296 TQKYPQEHMMVQDMLSPSPTERPEATDIIENAIFENL 332

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 27/129 (20%), Positives = 40/129 (31%), Gaps = 56/129 (43%)

Query: 151 CDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE-----------RY-MASD--------- 187
             IRL DFG +      E    +  T  Y APE            Y    D         
Sbjct: 237 MQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILF 296

Query: 188 ----------DEEHRQLF-----------------------DLISKMLEYEPSERISLSE 214
                           +                        DLIS++L+ +P  R++  +
Sbjct: 297 TLLAGSPPFWHRRQILMLRMIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQ 356

Query: 215 ALRHPFFDK 223
           AL+HPFF++
Sbjct: 357 ALQHPFFER 365

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 254 CDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVI------LELGWAQPCDVWSIGCIIF 305
             IRL DFG +      E    +  T  Y APE++         G+ +  D+W+ G I+F
Sbjct: 237 MQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILF 296

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 58/314 (18%), Positives = 95/314 (30%), Gaps = 97/314 (30%)

Query: 24  VALKIIK---------NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC 74
           V +K IK           +       LEI  L ++  +  N     +K+LD F+  G   
Sbjct: 52  VVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRV--EHAN----IIKVLDIFENQGFFQ 105

Query: 75  IAFEIL--GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLI 132
           +  E    GL +F F+  +  L                  E            ++  QL+
Sbjct: 106 LVMEKHGSGLDLFAFIDRHPRL-----------------DE--------PLASYIFRQLV 140

Query: 133 YAVDYNNKKKREVRRVR--------RCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPE- 181
            AV Y   K    R ++           I+LIDFGSA +    +   T   T  Y APE 
Sbjct: 141 SAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEV 200

Query: 182 ----RYMAS---------------------DDEEHR-------------QLFDLISKMLE 203
                Y                         + E               +L  L+S +L+
Sbjct: 201 LMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETVEAAIHPPYLVSKELMSLVSGLLQ 260

Query: 204 YEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD------RILSSVSSLVMRRVRRCDIR 257
             P  R +L + +  P+  +  +      +           +LS+ S  +  R      +
Sbjct: 261 PVPERRTTLEKLVTDPWVTQPVNLADYTWEEVFRVNKPESGVLSAASLEMGNRSLSDVAQ 320

Query: 258 LIDFGSATFDDEHH 271
             +         HH
Sbjct: 321 AQELCGGEGHHHHH 334

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 253 RCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQP-CDVWSIGCIIFELYL 309
              I+LIDFGSA +    +   T   T  Y APEV++   +  P  ++WS+G  ++ L  
Sbjct: 166 DFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVF 225

Query: 310 G 310
            
Sbjct: 226 E 226

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 49.1 bits (118), Expect = 6e-07
 Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 255 DIRLIDFG-SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++++ DFG S        + +  T  Y  PE+I      +  D+WS+G + +E  +G
Sbjct: 147 ELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVG 203

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 93/261 (35%)

Query: 23  VVALKII--KNVEKYREAARL--EINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
           ++ALK++    +EK     +L  E+     +  + PN     +++  +F     + +  E
Sbjct: 36  ILALKVLFKAQLEKAGVEHQLRREVEIQSHL--RHPN----ILRLYGYFHDATRVYLILE 89

Query: 79  -ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY 137
                +V+  L++ +                    E         +      +L  A+ Y
Sbjct: 90  YAPLGTVYRELQKLSKFD-----------------E--------QRTATYITELANALSY 124

Query: 138 NNKKKREVRRV--------RRCDIRLIDFG-SATFDDEHHSTIVSTRHYRAPERYMAS-- 186
            + K+   R +           ++++ DFG S        + +  T  Y  PE  M    
Sbjct: 125 CHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPE--MIEGR 182

Query: 187 -------------------------DDEEHRQLF-------------------DLISKML 202
                                    +   +++ +                   DLIS++L
Sbjct: 183 MHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLL 242

Query: 203 EYEPSERISLSEALRHPFFDK 223
           ++ PS+R  L E L HP+   
Sbjct: 243 KHNPSQRPMLREVLEHPWITA 263

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 14/69 (20%)

Query: 253 RCDIRLIDFG-SATFDDEHHS------TIVSTRHYRAPEVILELGWAQ-------PCDVW 298
              I + DFG     D    S          T  +RAPE++ E    Q         D++
Sbjct: 164 NLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIF 223

Query: 299 SIGCIIFEL 307
           S+GC+ + +
Sbjct: 224 SMGCVFYYI 232

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 47.1 bits (112), Expect = 5e-06
 Identities = 12/26 (46%), Positives = 20/26 (76%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFF 221
           DLIS+M++++P +R +  + LRHP F
Sbjct: 274 DLISQMIDHDPLKRPTAMKVLRHPLF 299

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 43.2 bits (102), Expect = 8e-05
 Identities = 29/186 (15%), Positives = 51/186 (27%), Gaps = 53/186 (28%)

Query: 24  VALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILGLS 83
           VA+K +  ++    A   EI  L +  +  PN     ++          + IA E+  L+
Sbjct: 42  VAVKRM-LIDFCDIALM-EIKLLTESDDH-PN----VIRYYCSETTDRFLYIALELCNLN 94

Query: 84  VFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY------ 137
           + D ++  N    +L                            +  Q+   V +      
Sbjct: 95  LQDLVESKNVSDENLKL------------------QKEYNPISLLRQIASGVAHLHSLKI 136

Query: 138 ---------------NNKKKREVRRVRRCDIRLIDFG-SATFDDEHHS------TIVSTR 175
                          +     +        I + DFG     D    S          T 
Sbjct: 137 IHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTS 196

Query: 176 HYRAPE 181
            +RAPE
Sbjct: 197 GWRAPE 202

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 27/89 (30%), Positives = 32/89 (35%), Gaps = 35/89 (39%)

Query: 254 CDIRLIDFGSA-TFDDEHHSTI-----------------------------VSTRHYRAP 283
           C +++ DFG A T D   +                                V TR YRAP
Sbjct: 193 CSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAP 252

Query: 284 EVILELGWAQ---PCDVWSIGCIIFELYL 309
           E+I  L         DVWSIGCI  EL  
Sbjct: 253 ELI--LLQENYTEAIDVWSIGCIFAELLN 279

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 49.4 bits (118), Expect = 8e-07
 Identities = 12/29 (41%), Positives = 22/29 (75%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDKL 224
            L+ +ML + P++RI+++E L HPFF ++
Sbjct: 375 HLLKRMLVFNPNKRITINECLAHPFFKEV 403

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 256 IRLIDFGSATFDDEHHS---TIVSTRHYRAPEVIL--ELGWAQPCDVWSIGCIIFELYLG 310
           +++ DFG++      +    T   T  Y APE+I     G+ +  D+WS+GC I E+  G
Sbjct: 162 LKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATG 221

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 16/53 (30%), Positives = 30/53 (56%)

Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY 308
           +++ DFG+A     H +    +  + APEV     +++ CDV+S G I++E+ 
Sbjct: 145 LKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVI 197

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 256 IRLIDFGSA--TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           IR+ D G A    + +     V T  Y APEV+    +    D W++GC+++E+  G
Sbjct: 325 IRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAG 381

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 158 FGSATFDDEHHSTI---VSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSE 214
           FG   F DE    +   + ++    P++   ++D     L DLI++ML+  P  RI + E
Sbjct: 235 FGQCPFMDERIMCLHSKIKSQALEFPDQPDIAED-----LKDLITRMLDKNPESRIVVPE 289

Query: 215 ALRHPFFDK 223
              HP+  +
Sbjct: 290 IKLHPWVTR 298

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 43.0 bits (102), Expect = 6e-05
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 6/59 (10%)

Query: 255 DIRLIDFG-SATFDDEHH--STIVSTRHYRAPEVILELGWA---QPCDVWSIGCIIFEL 307
            I++ DFG S  F       S  V T  + APE + E       +  DVW++G  ++  
Sbjct: 175 HIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCF 233

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A        T+  T    APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 180 IQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 255 DIRLIDFGSATF-DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            +++ D G AT         ++ T  + APE+  E  + +  DV++ G  + E+
Sbjct: 170 SVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEM 222

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 46.6 bits (111), Expect = 5e-06
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 15/67 (22%)

Query: 256 IRLIDFGSATFDD------------EHHSTIVSTRHYRAPEVILELGWA---QPCDVWSI 300
             L+D GS                 +  +    T  YRAPE+          +  DVWS+
Sbjct: 173 PVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSL 232

Query: 301 GCIIFEL 307
           GC+++ +
Sbjct: 233 GCVLYAM 239

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 46.0 bits (110), Expect = 6e-06
 Identities = 31/157 (19%), Positives = 52/157 (33%), Gaps = 55/157 (35%)

Query: 122 DQVRHMSYQLIYAVDYNNKKKREVRRV--------RRCDIRLIDFG-SATF-DDEHHSTI 171
            + R +  Q++ AVDY ++     R +           + ++ DFG S    D E   T 
Sbjct: 111 MEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTS 170

Query: 172 VSTRHYRAPE-----RYMAS---------------------DDEEHRQLF---------- 195
             + +Y APE      Y                        DDE    LF          
Sbjct: 171 CGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYI 230

Query: 196 ---------DLISKMLEYEPSERISLSEALRHPFFDK 223
                     L+  ML+ +P +R ++ +   H +F +
Sbjct: 231 PEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQ 267

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 255 DIRLIDFG-SATF-DDEHHSTIVSTRHYRAPEVILELGWAQP-CDVWSIGCIIFELYLG 310
           + ++ DFG S    D E   T   + +Y APEVI    +A P  D+WS G I++ L  G
Sbjct: 149 NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCG 207

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 256 IRLIDFGSA----TFDDEHHSTIVSTRHYRAPEVILELGWAQ-------PCDVWSIGCII 304
           IRL DFGS               V T  Y +PE++  +G           CD W++G   
Sbjct: 201 IRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFA 260

Query: 305 FELYLGIT 312
           +E++ G T
Sbjct: 261 YEMFYGQT 268

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 46.7 bits (111), Expect = 6e-06
 Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 256 IRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +R+ D G A               T  + APE++L   +    D +++G  ++E+   
Sbjct: 328 VRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAA 385

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 252 RRCDIRLIDFG-SATFDDEHHSTIVSTRHYRAPEVILELGW--AQPCDVWSIGCIIFEL 307
           +   ++L DFG S    D+       T  +  PE             D+WS+G  ++ +
Sbjct: 187 KNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVM 245

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 45.9 bits (109), Expect = 9e-06
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDK 223
           D +   L   P+ERI+  +AL+H +   
Sbjct: 301 DFLKLFLRKNPAERITSEDALKHEWLAD 328

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 46.3 bits (110), Expect = 8e-06
 Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 20/71 (28%)

Query: 256 IRLIDFGSATFDD---------------EHHSTIVSTRHYRAPEVILELGWAQP----CD 296
           I+L DFGSAT                  E   T  +T  YR PE+I +L    P     D
Sbjct: 177 IKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEII-DLYSNFPIGEKQD 235

Query: 297 VWSIGCIIFEL 307
           +W++GCI++ L
Sbjct: 236 IWALGCILYLL 246

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 57/276 (20%), Positives = 99/276 (35%), Gaps = 91/276 (32%)

Query: 24  VALKII--KNVEKYREAARL--EINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI 79
           VALK I  + ++K     R+  EI+ L+ +  + P+     +K+ D       + +  E 
Sbjct: 37  VALKFISRQLLKKSDMHMRVEREISYLKLL--RHPH----IIKLYDVITTPTDIVMVIEY 90

Query: 80  LGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN 139
            G  +FD++ E   +                  E        D+ R    Q+I A++Y +
Sbjct: 91  AGGELFDYIVEKKRM-----------------TE--------DEGRRFFQQIICAIEYCH 125

Query: 140 KKKREVRRVR--------RCDIRLIDFG-SATFDDEHH-STIVSTRHYRAPE-----RYM 184
           + K   R ++          ++++ DFG S    D +   T   + +Y APE      Y 
Sbjct: 126 RHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYA 185

Query: 185 AS---------------------DDEEHRQLF-------------------DLISKMLEY 204
                                  DDE    LF                    LI +M+  
Sbjct: 186 GPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSCVYVMPDFLSPGAQSLIRRMIVA 245

Query: 205 EPSERISLSEALRHPFFDK-LPSSVRVHAQTQADRI 239
           +P +RI++ E  R P+F+  LP  +R   + Q    
Sbjct: 246 DPMQRITIQEIRRDPWFNVNLPDYLRPMEEVQGSYA 281

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 255 DIRLIDFG-SATFDDEHH-STIVSTRHYRAPEVILELGWAQP-CDVWSIGCIIFELYLG 310
           ++++ DFG S    D +   T   + +Y APEVI    +A P  DVWS G +++ + +G
Sbjct: 146 NVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVG 204

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 256 IRLIDFGSA----TFDDEHHSTIVSTRHYRAPEVILELGWAQP----CDVWSIGCIIFEL 307
           ++L DFG+             T V T  Y +PEV+   G        CD WS+G  ++E+
Sbjct: 207 LKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEM 266

Query: 308 YLGIT 312
            +G T
Sbjct: 267 LVGDT 271

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 255 DIRLIDFG-SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++++ DFG S         T+  T  Y  PE+I      +  D+W  G + +E  +G
Sbjct: 152 ELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVG 208

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 159 GSATFDDEHHSTI---VSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEA 215
           G   FD   H+     +     + P  +++   +      DLISK+L Y P +R+ L   
Sbjct: 208 GMPPFDSPSHTETHRRIVNVDLKFP-PFLSDGSK------DLISKLLRYHPPQRLPLKGV 260

Query: 216 LRHPFFDK 223
           + HP+   
Sbjct: 261 MEHPWVKA 268

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 29/157 (18%), Positives = 52/157 (33%), Gaps = 55/157 (35%)

Query: 122 DQVRHMSYQLIYAVDYNNKKKREVRRVR--------RCDIRLIDFG-SATF-DDEHHSTI 171
            + R +  Q++  VDY ++     R ++          + ++ DFG S    D E   T 
Sbjct: 116 KESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTS 175

Query: 172 VSTRHYRAPE-----RYMAS---------------------DDEEHRQLF---------- 195
             + +Y APE      Y                        DD+    LF          
Sbjct: 176 CGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYT 235

Query: 196 ---------DLISKMLEYEPSERISLSEALRHPFFDK 223
                     L+  ML+ +P +R ++ +   H +F +
Sbjct: 236 PQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQ 272

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 43.6 bits (103), Expect = 6e-05
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 255 DIRLIDFG-SATF-DDEHHSTIVSTRHYRAPEVILELGWAQP-CDVWSIGCIIFELYLG 310
           + ++ DFG S    D E   T   + +Y APEVI    +A P  D+WS G I++ L  G
Sbjct: 154 NAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCG 212

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)

Query: 256 IRLIDFGSA----TFDDEHHSTIVSTRHYRAPEVILELGWAQP-----CDVWSIGCIIFE 306
           IRL DFGS            S  V T  Y +PE++  +   +      CD WS+G  ++E
Sbjct: 214 IRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYE 273

Query: 307 LYLGIT 312
           +  G T
Sbjct: 274 MLYGET 279

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 20/119 (16%), Positives = 39/119 (32%), Gaps = 16/119 (13%)

Query: 163 FDDEHHST-----IVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALR 217
           +D    S          + Y  P + + S          L+ K+L   PS RI++ +  +
Sbjct: 208 WDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPL------ALLHKILVENPSARITIPDIKK 261

Query: 218 HPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLID-----FGSATFDDEHH 271
             +++K         +  +  +  S S          D   ++      GS    + HH
Sbjct: 262 DRWYNKPLKKGAKRPRVTSGGVSESPSGFSKHIQSNLDFSPVNSASRTPGSGWSKEHHH 320

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 255 DIRLIDFG-SATFDDEHHSTIVSTR----HYRAPEVILELGWA-QPCDVWSIGCIIFEL 307
           ++++ DFG +  F   +   +++       Y APE++    +  +P DVWS G ++  +
Sbjct: 143 NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAM 201

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 13/83 (15%)

Query: 163 FDDEHHSTI-------VSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEA 215
           F+D             + +  Y  P+    S +        LIS++   +P+ RIS+ E 
Sbjct: 218 FEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECC-----HLISRIFVADPATRISIPEI 272

Query: 216 LRHPFFDK-LPSSVRVHAQTQAD 237
             H +F K LP+ +   + T + 
Sbjct: 273 KTHSWFLKNLPADLMNESNTGSQ 295

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 43.5 bits (103), Expect = 6e-05
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 252 RRCDIRLIDFG-SATF-DDEHHSTIVSTRHYRAPEVILELGWAQP-CDVWSIGCIIFELY 308
               +++ DFG S +        + V T  Y APEV+L   +     DVWS G  ++ + 
Sbjct: 153 PAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVML 212

Query: 309 LG 310
           +G
Sbjct: 213 VG 214

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 34/264 (12%), Positives = 72/264 (27%), Gaps = 79/264 (29%)

Query: 23  VVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI 79
           + A+K  K         + A  E+ A   +G +  +     V+    +    HM I  E 
Sbjct: 38  IYAIKRSKKPLAGSVDEQNALREVYAHAVLG-QHSH----VVRYFSAWAEDDHMLIQNEY 92

Query: 80  L-GLSVFDFLKENNYLPYSLD--QVRHMSYQLIYA--------------KENNYLPYSLD 122
             G S+ D + EN  +       +++ +  Q+                 K +N     + 
Sbjct: 93  CNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIF---IS 149

Query: 123 QVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPE- 181
           +    +       + +    + +        ++ D G  T              + A E 
Sbjct: 150 RTSIPNAASEEGDEDDWASNKVM-------FKIGDLGHVTRISSPQ-VEEGDSRFLANEV 201

Query: 182 -----RY---------------MA-------SDDEEHR---------------QLFDLIS 199
                 +                A       + D+ H                +  +L+ 
Sbjct: 202 LQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQGRLPRIPQVLSQEFTELLK 261

Query: 200 KMLEYEPSERISLSEALRHPFFDK 223
            M+  +P  R S    ++H     
Sbjct: 262 VMIHPDPERRPSAMALVKHSVLLS 285

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 8/52 (15%), Positives = 17/52 (32%), Gaps = 2/52 (3%)

Query: 257 RLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFEL 307
           ++ D G  T              + A EV+ E        D++++   +   
Sbjct: 174 KIGDLGHVTRISSPQ-VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCA 224

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 255 DIRLIDFG-SATFDDEH--HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
           +++L DFG +    D     +T V T  + APEVI +  +    D+WS+G    EL
Sbjct: 157 EVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIEL 212

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 12/63 (19%)

Query: 255 DIRLIDFG-SATFDDEHH--STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI 311
             +L DFG +    D     +T++ T  + APEVI E+G+    D+WS         LGI
Sbjct: 163 HAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS---------LGI 213

Query: 312 TLM 314
           T +
Sbjct: 214 TAI 216

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 11/26 (42%), Positives = 19/26 (73%)

Query: 196 DLISKMLEYEPSERISLSEALRHPFF 221
           DLISK+L  +  +R+S ++ L+HP+ 
Sbjct: 274 DLISKLLVRDAKQRLSAAQVLQHPWV 299

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 255 DIRLIDFGSATF----------DDEHHSTIVSTRHYRAPEVILELGWAQ-----PCDVWS 299
            +++ DF   +                 T   +  Y APEV+             CD+WS
Sbjct: 152 PVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWS 211

Query: 300 IGCIIF 305
           +G I++
Sbjct: 212 LGVILY 217

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 163 FDDEHHSTI---VSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHP 219
           F+ ++   +   +    Y  P               DL+  MLEYEP++R S+ +  +H 
Sbjct: 213 FEGDNIYKLFENIGKGSYAIPG-DCGPPLS------DLLKGMLEYEPAKRFSIRQIRQHS 265

Query: 220 FFDK 223
           +F K
Sbjct: 266 WFRK 269

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 44/259 (16%), Positives = 82/259 (31%), Gaps = 90/259 (34%)

Query: 24  VALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE-I 79
           VA+KII   +      +    E+  ++ +    PN     VK+ +  +    + +  E  
Sbjct: 43  VAIKIIDKTQLNPTSLQKLFREVRIMKIL--NHPN----IVKLFEVIETEKTLYLIMEYA 96

Query: 80  LGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN 139
            G  VFD+L  +  +                 KE         + R    Q++ AV Y +
Sbjct: 97  SGGEVFDYLVAHGRM-----------------KE--------KEARSKFRQIVSAVQYCH 131

Query: 140 KK-------KRE-VRRVRRCDIRLIDFG-SATFDDEHH-STIVSTRHYRAPE-----RYM 184
           +K       K E +      +I++ DFG S  F              Y APE     +Y 
Sbjct: 132 QKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYD 191

Query: 185 AS---------------------DDEEHRQLF-------------------DLISKMLEY 204
                                  D +  ++L                    +L+ + L  
Sbjct: 192 GPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVL 251

Query: 205 EPSERISLSEALRHPFFDK 223
            P +R +L + ++  + + 
Sbjct: 252 NPIKRGTLEQIMKDRWINA 270

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 253 RCDIRLIDFG-SATFDDEHH-STIVSTRHYRAPEVILELGWAQP-CDVWSIGCIIFELYL 309
             +I++ DFG S  F              Y APE+     +  P  DVWS+G I++ L  
Sbjct: 150 DMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVS 209

Query: 310 G 310
           G
Sbjct: 210 G 210

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 256 IRLIDFGSA-TFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLG 310
           +R+ D G A  F  +     V T  Y APEV+   + +    D +S+GC++F+L  G
Sbjct: 331 VRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRG 387

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 163 FDDEHHST-----IVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALR 217
           +D    S          + Y  P + + S          L+ K+L   PS RI++ +  +
Sbjct: 208 WDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPL------ALLHKILVENPSARITIPDIKK 261

Query: 218 HPFFDK 223
             +++K
Sbjct: 262 DRWYNK 267

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 42.2 bits (100), Expect = 1e-04
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 6/62 (9%)

Query: 255 DIRLIDFG-SATFDDEHHSTIVSTR----HYRAPEVILELGWA-QPCDVWSIGCIIFELY 308
           ++++ DFG +  F   +   +++       Y APE++    +  +P DVWS G ++  + 
Sbjct: 143 NLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAML 202

Query: 309 LG 310
            G
Sbjct: 203 AG 204

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 42.9 bits (102), Expect = 8e-05
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG A +  +   T+  T  Y APEV+    + +  D WS G +I+E+  G
Sbjct: 145 IKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAG 199

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 9/24 (37%), Positives = 18/24 (75%)

Query: 196 DLISKMLEYEPSERISLSEALRHP 219
            LI  +L+ EP++R++++E + HP
Sbjct: 235 MLIRNLLKTEPTQRMTITEFMNHP 258

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 42.9 bits (102), Expect = 9e-05
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 256 IRLIDFG---SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I+L DFG    +   ++   +   T  Y APEV+   G  Q  D WS G ++FE+  G
Sbjct: 165 IKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG 222

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 42.7 bits (101), Expect = 9e-05
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 252 RRCDIRLIDFG-SATFDDEH-HSTIVSTRHYRAPEVILELGWAQP-----CDVWSIGCII 304
            R  I+L DFG S    D+           Y APE I      +P      DVWS+G  +
Sbjct: 160 ERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISL 219

Query: 305 FELYLG 310
            EL  G
Sbjct: 220 VELATG 225

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 255 DIRLIDFGSA---TFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            ++L DFG     T +    ST+V T ++ APEV+    +    D+WS+G +  E+
Sbjct: 154 SVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEM 209

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 255 DIRLIDFG-SATFDDEH--HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            ++L DFG  A    +     ++V T ++ APEVI    +A   D+WS+G ++ E+
Sbjct: 179 RVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEM 234

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 256 IRLIDFG---SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++L DFG    +  D     T   T  Y APE+++  G  +  D WS+G +++++  G
Sbjct: 160 VKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTG 217

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 252 RRCDIRLIDFG-SATFDDEH-HSTIVSTRHYRAPEVILELGWAQP----CDVWSIGCIIF 305
               +++ DFG S    D+         + Y APE I      +      D+WS+G  + 
Sbjct: 145 ALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMI 204

Query: 306 ELYLG 310
           EL + 
Sbjct: 205 ELAIL 209

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 256 IRLIDFG---SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG       D     T   T  Y APEV+ +  + +  D W +G +++E+  G
Sbjct: 288 IKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG 345

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 252 RRCDIRLIDFG-SATFDDE-HHSTIVSTRHYRAPEVILELGWAQP----CDVWSIGCIIF 305
           R  +I+L DFG S    D    +     R Y APE I      Q      DVWS+G  ++
Sbjct: 161 RSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLY 220

Query: 306 ELYLG 310
           EL  G
Sbjct: 221 ELATG 225

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 256 IRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWA--QPCDVWSIGCIIFELY 308
            ++ DFG +       S ++    + APE I     +  +  D +S   I++ + 
Sbjct: 168 AKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTIL 222

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 12/57 (21%), Positives = 26/57 (45%), Gaps = 6/57 (10%)

Query: 256 IRLIDFGSA-TFDDEHHSTIVSTRHYRAPEVILELGWAQP-CDVWSIGCIIFELYLG 310
           ++LID G+    +      +  T  ++APE++          D++++G  +  L L 
Sbjct: 220 LKLIDLGAVSRINSF--GYLYGTPGFQAPEIVR--TGPTVATDIYTVGRTLAALTLD 272

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 256 IRLIDFG---SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG        D   +T   T  Y APE++L   +    D WS G +++E+ +G
Sbjct: 157 IKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIG 214

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 256 IRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIGCIIFELYLG 310
           + + DF  A     +   +T+  T+ Y APE+       G++   D WS+G   +EL  G
Sbjct: 154 VHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRG 213

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 3/58 (5%)

Query: 256 IRLIDFG---SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I++ DFG       D     T   T  Y APEV+ +  + +  D W +G +++E+  G
Sbjct: 144 IKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCG 201

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 8/61 (13%)

Query: 255 DIRLIDFG-SATFDDEH--HSTIVSTRHYRAPEVILELGWAQP-----CDVWSIGCIIFE 306
           +++L+DFG SA  D      +T + T ++ APEVI              D+WS+G    E
Sbjct: 167 EVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIE 226

Query: 307 L 307
           +
Sbjct: 227 M 227

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 39.9 bits (94), Expect = 8e-04
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 256 IRLIDFG---SATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           I+L D+G         +  ST   T +Y APE++    +    D W++G ++FE+  G
Sbjct: 149 IKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAG 206

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	351
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
3soc_A	322	Activin receptor type-2A; structural genomics cons	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	100.0
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.98
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.98
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.98
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.98
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.98
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.98
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.98
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.98
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.98
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.98
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.98
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.98
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.98
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.98
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.98
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.98
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.98
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.98
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.98
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.98
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.98
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.98
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.98
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.98
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.97
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.97
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.97
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.97
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.97
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.97
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.97
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.97
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.97
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.97
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.97
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.97
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.97
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.97
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.97
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.97
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.97
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.97
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.97
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.97
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.97
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.97
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.97
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.97
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.97
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.97
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.97
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.97
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.97
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.97
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.97
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.97
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.97
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.97
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.97
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.97
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.97
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.97
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.97
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.97
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.97
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.97
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.97
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.97
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.97
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.97
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.97
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.97
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.97
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.97
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.97
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.97
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.97
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.97
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.97
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.97
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.97
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.97
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.97
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.97
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.97
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.97
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.97
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.97
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.97
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.97
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.97
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.97
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.97
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.97
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.97
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.97
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.97
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.97
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.97
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.97
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.97
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.97
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.97
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.97
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.97
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.97
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.97
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.97
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.97
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.97
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.97
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.96
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.96
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.96
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.96
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.96
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.96
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.96
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.96
3uqc_A	286	Probable conserved transmembrane protein; structur	99.96
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.96
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.96
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.95
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.88
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.8
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.74
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.5
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.19
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	99.16
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.1
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.1
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.1
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.09
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.09
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.04
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.03
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	98.98
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	98.96
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	98.91
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	98.87
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	98.85
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	98.75
3rp9_A	458	Mitogen-activated protein kinase; structural genom	98.71
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.68
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	98.67
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	98.67
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.66
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	98.65
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	98.62
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	98.62
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	98.6
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	98.6
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	98.58
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	98.57
3niz_A	311	Rhodanese family protein; structural genomics, str	98.57
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	98.57
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	98.57
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	98.56
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	98.55
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	98.54
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	98.54
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	98.53
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	98.52
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	98.52
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	98.51
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	98.51
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	98.5
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	98.49
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	98.49
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	98.48
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	98.48
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	98.48
3o0g_A	292	Cell division protein kinase 5; kinase activator c	98.47
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	98.46
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	98.46
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	98.46
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	98.46
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	98.45
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	98.45
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	98.44
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	98.44
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	98.44
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	98.43
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	98.43
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	98.42
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	98.42
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	98.42
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	98.41
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	98.41
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	98.4
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	98.4
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	98.4
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	98.4
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	98.39
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	98.39
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	98.38
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	98.38
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	98.38
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	98.38
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	98.37
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	98.37
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	98.37
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	98.37
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	98.36
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	98.36
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	98.36
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	98.35
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	98.35
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	98.35
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	98.34
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	98.33
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	98.33
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	98.33
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	98.33
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	98.33
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	98.32
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	98.31
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	98.31
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	98.3
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	98.3
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	98.3
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	98.3
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	98.29
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	98.29
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	98.29
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	98.28
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	98.27
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	98.27
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	98.27
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	98.26
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	98.26
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	98.25
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	98.24
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	98.23
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	98.23
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	98.23
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	98.23
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	98.22
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	98.21
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	98.21
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	98.21
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	98.21
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	98.21
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	98.21
4aoj_A	329	High affinity nerve growth factor receptor; transf	98.2
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	98.2
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	98.19
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	98.18
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	98.17
3fme_A	290	Dual specificity mitogen-activated protein kinase;	98.17
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	98.16
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	98.16
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	98.16
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	98.14
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	98.14
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	98.14
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	98.13
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	98.13
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	98.12
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	98.11
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	98.11
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	98.11
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	98.09
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	98.08
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	98.06
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	98.05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	98.05
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	98.04
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	98.03
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	98.02
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	98.02
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	98.01
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	98.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	97.99
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	97.99
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	97.98
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	97.98
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	97.98
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	97.97
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	97.95
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	97.92
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.92
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	97.92
3bhy_A	283	Death-associated protein kinase 3; death associate	97.9
3aln_A	327	Dual specificity mitogen-activated protein kinase;	97.89
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	97.88
3an0_A	340	Dual specificity mitogen-activated protein kinase;	97.87
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	97.86
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	97.85
2dyl_A	318	Dual specificity mitogen-activated protein kinase	97.83
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	97.79
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	97.78
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	97.76
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.74
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	97.7
3ork_A	311	Serine/threonine protein kinase; structural genomi	97.68
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	97.59
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	97.59
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	97.58
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	97.56
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	97.55
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	97.53
3q4u_A	301	Activin receptor type-1; structural genomics conso	97.51
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	97.51
3soc_A	322	Activin receptor type-2A; structural genomics cons	97.5
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.48
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	97.46
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	97.46
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	97.46
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	97.46
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	97.45
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	97.44
2a19_B	284	Interferon-induced, double-stranded RNA-activated	97.44
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	97.43
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	97.38
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	97.36
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	97.33
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	97.3
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	97.3
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	97.27
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	97.27
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	97.27
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	97.24
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.22
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	97.21
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	97.21
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	97.2
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	97.19
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	97.18
3pls_A	298	Macrophage-stimulating protein receptor; protein k	97.18
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	97.17
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	97.16
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	97.14
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	97.13
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	97.12
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	97.12
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	97.12
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	97.1
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	97.09
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	97.08
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	97.07
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	97.06
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	97.04
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	97.03
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	97.0
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	96.99
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	96.98
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	96.97
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	96.95
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	96.95
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	96.93
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	96.93
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	96.93
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	96.91
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	96.86
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	96.86
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	96.85
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	96.83
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	96.83
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	96.82
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	96.82
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	96.81
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	96.8
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	96.77
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	96.77
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	96.75
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	96.71
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	96.7
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	96.7
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	96.69
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	96.69
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	96.68

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.2e-48  Score=358.68  Aligned_cols=214  Identities=18%  Similarity=0.292  Sum_probs=183.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|+++.+++.||||++.+..    ...+.+.+|+++|+.|+|+|      ||+++++|++++++||||
T Consensus        38 ~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~l~~~~~~~~~~yivm  111 (311)
T 4aw0_A           38 KILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF------FVKLYFTFQDDEKLYFGL  111 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCC------CCeEEEEEEeCCEEEEEE
Confidence            67999999999999999999999999997532    33467889999999999888      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||| ||+|.+++++.+  .+++..++.++.|++.|                       |+|||++||+|||+||+||.|.
T Consensus       112 Ey~~gG~L~~~i~~~~--~l~e~~~~~~~~qi~~a-----------------------l~ylH~~~IiHRDlKPeNILl~  166 (311)
T 4aw0_A          112 SYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSA-----------------------LEYLHGKGIIHRDLKPENILLN  166 (311)
T ss_dssp             CCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEEC
T ss_pred             ecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCccCCCCHHHeEEc
Confidence            999 899999998875  57888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (311)
T 4aw0_A          167 --------------------------------------------------------------------------------  166 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                     ..+.+||+|||++....     ....+.+||+.|||||++.+.+++.++|+||+||++|+|+||.
T Consensus       167 ---------------~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~  231 (311)
T 4aw0_A          167 ---------------EDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL  231 (311)
T ss_dssp             ---------------TTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSS
T ss_pred             ---------------CCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCC
Confidence                           24579999999997632     2235679999999999999999999999999999999999999


Q ss_pred             ccccccCCCceee---ecccCCcccccccccccccCccC
Q psy2006         312 TLMARKTKTKYFY---HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       312 ~pf~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      +||.+.+..+++.   ++.+.|+.      .+++++++|
T Consensus       232 ~PF~~~~~~~~~~~i~~~~~~~p~------~~s~~~~dl  264 (311)
T 4aw0_A          232 PPFRAGNEGLIFAKIIKLEYDFPE------KFFPKARDL  264 (311)
T ss_dssp             CSSCCSSHHHHHHHHHHTCCCCCT------TCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHcCCCCCCc------ccCHHHHHH
Confidence            9999988777654   45554432      355555543

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=2.4e-48  Score=361.80  Aligned_cols=197  Identities=19%  Similarity=0.300  Sum_probs=174.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +++||+|+||+||+|+++.+|+.||||++.... ...+.+.+|+++|+.++|+|      ||+++++|..++++||||||
T Consensus        79 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn------IV~l~~~~~~~~~~~ivmEy  152 (346)
T 4fih_A           79 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN------VVEMYNSYLVGDELWVVMEF  152 (346)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEEECC
T ss_pred             eEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCC------CCcEEEEEEECCEEEEEEeC
Confidence            367999999999999999999999999997542 34456789999999999888      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      | ||+|.+++...   ++++..++.++.|++.|                       |+|||++||+|||+|++||.|.  
T Consensus       153 ~~gg~L~~~l~~~---~l~e~~~~~~~~qi~~a-----------------------L~ylH~~~IiHRDlKp~NILl~--  204 (346)
T 4fih_A          153 LEGGALTDIVTHT---RMNEEQIAAVCLAVLQA-----------------------LSVLHAQGVIHRDIKSDSILLT--  204 (346)
T ss_dssp             CTTEEHHHHHHHS---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC--
T ss_pred             CCCCcHHHHHHcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccccCCHHHEEEC--
Confidence            9 89999999764   47888888888888888                       9999999999999999999986  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       205 --------------------------------------------------------------------------------  204 (346)
T 4fih_A          205 --------------------------------------------------------------------------------  204 (346)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   ..+.+||+|||++.....   ...+.+||+.|||||++.+.+|+.++||||+||++|+|++|.+||.
T Consensus       205 -------------~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~  271 (346)
T 4fih_A          205 -------------HDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYF  271 (346)
T ss_dssp             -------------TTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             -------------CCCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                         245799999999976432   3456899999999999999999999999999999999999999999


Q ss_pred             ccCCCceee
Q psy2006         316 RKTKTKYFY  324 (351)
Q Consensus       316 ~~~~~~~~~  324 (351)
                      +.+..+++.
T Consensus       272 ~~~~~~~~~  280 (346)
T 4fih_A          272 NEPPLKAMK  280 (346)
T ss_dssp             TSCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            888776654

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=3.3e-48  Score=361.39  Aligned_cols=200  Identities=19%  Similarity=0.283  Sum_probs=172.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||+|+||+||+|+++.+++.||||++.+.   ....+.+.+|+++|+.|+|+|      ||+++++|+.++++||||
T Consensus        29 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~Hpn------IV~~~~~~~~~~~~yiVm  102 (350)
T 4b9d_A           29 LQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPN------IVQYRESFEENGSLYIVM  102 (350)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEEE
T ss_pred             eEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCC------CCcEEEEEEECCEEEEEE
Confidence            36799999999999999999999999999753   334567889999999999888      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||| ||+|.+++...+...+++..++.++.|++.|                       |+|||++||+|||+|+.||.|.
T Consensus       103 Ey~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~a-----------------------L~ylH~~~IiHRDlKp~NILl~  159 (350)
T 4b9d_A          103 DYCEGGDLFKRINAQKGVLFQEDQILDWFVQICLA-----------------------LKHVHDRKILHRDIKSQNIFLT  159 (350)
T ss_dssp             ECCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCEETTCCGGGEEEC
T ss_pred             eCCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeccCCHHHEEEC
Confidence            999 8999999988776678888899999988888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (350)
T 4b9d_A          160 --------------------------------------------------------------------------------  159 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ..+.+||+|||+++....   .....+||+.|||||++.+.+|+.++|||||||++|+|+||.+|
T Consensus       160 ---------------~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~P  224 (350)
T 4b9d_A          160 ---------------KDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHA  224 (350)
T ss_dssp             ---------------TTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ---------------CCCCEEEcccccceeecCCcccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence                           235799999999976432   23457899999999999999999999999999999999999999


Q ss_pred             ccccCCCceee
Q psy2006         314 MARKTKTKYFY  324 (351)
Q Consensus       314 f~~~~~~~~~~  324 (351)
                      |.+.+..+++.
T Consensus       225 F~~~~~~~~~~  235 (350)
T 4b9d_A          225 FEAGSMKNLVL  235 (350)
T ss_dssp             CCCSSHHHHHH
T ss_pred             CCCcCHHHHHH
Confidence            99988777654

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=3e-47  Score=362.80  Aligned_cols=197  Identities=19%  Similarity=0.297  Sum_probs=174.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +++||+|+||+||+|+++.+|+.||||++.... ...+.+.+|+.+|+.++|+|      ||+++++|..++++||||||
T Consensus       156 ~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn------IV~l~~~~~~~~~~~iVmEy  229 (423)
T 4fie_A          156 FIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHEN------VVEMYNSYLVGDELWVVMEF  229 (423)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEEEEC
T ss_pred             eeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC------CCceEEEEEECCEEEEEEeC
Confidence            368999999999999999999999999997542 34567889999999999888      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      | ||+|.++++..   ++++..++.++.||+.|                       |+|||++||+|||+|++||+|.  
T Consensus       230 ~~gG~L~~~i~~~---~l~e~~~~~~~~qil~a-----------------------L~ylH~~~IiHRDiKp~NILl~--  281 (423)
T 4fie_A          230 LEGGALTDIVTHT---RMNEEQIAAVCLAVLQA-----------------------LSVLHAQGVIHRDIKSDSILLT--  281 (423)
T ss_dssp             CTTEEHHHHHHHS---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSTTTEEEC--
T ss_pred             CCCCcHHHHHhcc---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecccCCHHHEEEc--
Confidence            9 99999999764   47888888888888888                       9999999999999999999987  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       282 --------------------------------------------------------------------------------  281 (423)
T 4fie_A          282 --------------------------------------------------------------------------------  281 (423)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   ..+.+||+|||++....   ....+.+||+.|||||++.+.+|+.++|||||||++|+|++|.+||.
T Consensus       282 -------------~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~  348 (423)
T 4fie_A          282 -------------HDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYF  348 (423)
T ss_dssp             -------------TTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             -------------CCCCEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                         24579999999997643   23456899999999999999999999999999999999999999999


Q ss_pred             ccCCCceee
Q psy2006         316 RKTKTKYFY  324 (351)
Q Consensus       316 ~~~~~~~~~  324 (351)
                      +.+..+.+.
T Consensus       349 ~~~~~~~~~  357 (423)
T 4fie_A          349 NEPPLKAMK  357 (423)
T ss_dssp             TSCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            888776653

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=5.1e-47  Score=343.01  Aligned_cols=197  Identities=22%  Similarity=0.321  Sum_probs=161.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|+++.+++.||||++.+.    ....+.+.+|+++|+.++|+|      |++++++|..++++||||
T Consensus        19 ~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~Hpn------Iv~~~~~~~~~~~~~ivm   92 (275)
T 3hyh_A           19 KTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPH------IIKLYDVIKSKDEIIMVI   92 (275)
T ss_dssp             EEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCC------CCeEEEEEEECCEEEEEE
Confidence            6799999999999999999999999999753    233457889999999999888      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |||+|+|.+++...+  .+++..++.++.|++.|                       |+|||++||+|||+||+||.+. 
T Consensus        93 Ey~~g~L~~~l~~~~--~l~e~~~~~~~~qi~~a-----------------------l~ylH~~~IiHRDiKP~NILl~-  146 (275)
T 3hyh_A           93 EYAGNELFDYIVQRD--KMSEQEARRFFQQIISA-----------------------VEYCHRHKIVHRDLKPENLLLD-  146 (275)
T ss_dssp             ECCCEEHHHHHHHSC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCTTTEEEC-
T ss_pred             eCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccccCChHHeEEC-
Confidence            999999999998765  68888888888888888                       9999999999999999999986 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (275)
T 3hyh_A          147 --------------------------------------------------------------------------------  146 (275)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCC-CCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ..+.+||+|||++....  ....+.+||+.|||||++.+.++ +.++||||+||++|+|+||..||
T Consensus       147 --------------~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF  212 (275)
T 3hyh_A          147 --------------EHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPF  212 (275)
T ss_dssp             --------------TTCCEEECCSSCC---------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             --------------CCCCEEEeecCCCeecCCCCccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCC
Confidence                          24579999999997633  33456899999999999998886 67899999999999999999999


Q ss_pred             cccCCCceee
Q psy2006         315 ARKTKTKYFY  324 (351)
Q Consensus       315 ~~~~~~~~~~  324 (351)
                      .+.+..+++.
T Consensus       213 ~~~~~~~~~~  222 (275)
T 3hyh_A          213 DDESIPVLFK  222 (275)
T ss_dssp             CCSSHHHHHH
T ss_pred             CCCCHHHHHH
Confidence            9877666553

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=7e-47  Score=350.82  Aligned_cols=194  Identities=17%  Similarity=0.139  Sum_probs=169.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|+++.+|+.||||+++...    ...+|+.+|+.|+|+|      ||+++++|..++++||||||| 
T Consensus        64 ~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~----~~~~E~~il~~l~Hpn------IV~l~~~~~~~~~~~ivmEy~~  133 (336)
T 4g3f_A           64 PRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEV----FRVEELVACAGLSSPR------IVPLYGAVREGPWVNIFMELLE  133 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTT----CCTHHHHTTTTCCCTT------BCCEEEEEEETTEEEEEECCCT
T ss_pred             cEeccCCCeEEEEEEECCCCCEEEEEEECHHH----hHHHHHHHHHhCCCCC------CCcEEEEEEECCEEEEEEeccC
Confidence            46999999999999999999999999998632    2246999999999888      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      ||+|.+++++.+  .+++..++.++.|++.|                       |+|||+++|+|||+||.||.|..   
T Consensus       134 gg~L~~~l~~~~--~l~e~~~~~~~~qi~~a-----------------------L~ylH~~~IiHRDlKp~NILl~~---  185 (336)
T 4g3f_A          134 GGSLGQLIKQMG--CLPEDRALYYLGQALEG-----------------------LEYLHTRRILHGDVKADNVLLSS---  185 (336)
T ss_dssp             TCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECSCCCGGGEEECT---
T ss_pred             CCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceecccCHHHEEEeC---
Confidence            899999998875  58888888888888888                       99999999999999999998861   


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       186 --------------------------------------------------------------------------------  185 (336)
T 4g3f_A          186 --------------------------------------------------------------------------------  185 (336)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc--------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE--------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                 ....+||+|||+++....        .....+||+.|||||++.+.+++.++||||+||++|+|+||.+
T Consensus       186 -----------~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~  254 (336)
T 4g3f_A          186 -----------DGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCH  254 (336)
T ss_dssp             -----------TSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             -----------CCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcC
Confidence                       113599999999975321        1234689999999999999999999999999999999999999


Q ss_pred             cccccCCCceee
Q psy2006         313 LMARKTKTKYFY  324 (351)
Q Consensus       313 pf~~~~~~~~~~  324 (351)
                      ||.+.+..+++.
T Consensus       255 Pf~~~~~~~~~~  266 (336)
T 4g3f_A          255 PWTQYFRGPLCL  266 (336)
T ss_dssp             SSTTTCCSCCHH
T ss_pred             CCCCCCHHHHHH
Confidence            999988877664

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=7.2e-46  Score=338.15  Aligned_cols=196  Identities=14%  Similarity=0.220  Sum_probs=167.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee----CCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY----HGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~----~~~~~   74 (351)
                      ++||+|+||+||+|+++.+++.||+|++...   ....+.+.+|+++|+.|+|+|      ||+++++|..    ++++|
T Consensus        32 ~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~Hpn------IV~~~~~~~~~~~~~~~~~  105 (290)
T 3fpq_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPN------IVRFYDSWESTVKGKKCIV  105 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTT------BCCEEEEEEEEETTEEEEE
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCC------CCcEEEEEeeccCCCcEEE
Confidence            3699999999999999999999999999653   234567889999999999888      9999999975    34799


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc--ccccccCCC
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK--REVRRVRRC  151 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~d~k~~  151 (351)
                      |||||| ||+|.+++++..  .+++..++.++.|++.|                       |+|||+++  |+|||+||.
T Consensus       106 lvmEy~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~a-----------------------L~ylH~~~~~IiHRDlKp~  160 (290)
T 3fpq_A          106 LVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKG-----------------------LQFLHTRTPPIIHRDLKCD  160 (290)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHTSSSCCCCCCCCGG
T ss_pred             EEEeCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCCEEecccChh
Confidence            999999 999999998865  68888888888888888                       99999999  999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.|.+                                                                          
T Consensus       161 NILl~~--------------------------------------------------------------------------  166 (290)
T 3fpq_A          161 NIFITG--------------------------------------------------------------------------  166 (290)
T ss_dssp             GEEESS--------------------------------------------------------------------------
T ss_pred             heeEEC--------------------------------------------------------------------------
Confidence            998851                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                          ..+.+||+|||+++... ....+.+|||.|||||++. .+++.++|||||||++|+|+||
T Consensus       167 --------------------~~g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~-~~y~~~~DiwSlGvilyelltg  225 (290)
T 3fpq_A          167 --------------------PTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATS  225 (290)
T ss_dssp             --------------------TTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHS
T ss_pred             --------------------CCCCEEEEeCcCCEeCCCCccCCcccCccccCHHHcC-CCCCcHHHHHHHHHHHHHHHHC
Confidence                                13579999999997643 3345678999999999875 5699999999999999999999


Q ss_pred             cccccccCCCcee
Q psy2006         311 ITLMARKTKTKYF  323 (351)
Q Consensus       311 ~~pf~~~~~~~~~  323 (351)
                      .+||.+.+....+
T Consensus       226 ~~Pf~~~~~~~~~  238 (290)
T 3fpq_A          226 EYPYSECQNAAQI  238 (290)
T ss_dssp             SCTTTTCSSHHHH
T ss_pred             CCCCCCCCcHHHH
Confidence            9999876654433

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=7.8e-47  Score=346.35  Aligned_cols=198  Identities=22%  Similarity=0.329  Sum_probs=167.2

Q ss_pred             CccccCcccceEEEEEEe---ecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           1 MCSLNCVASNHVCTNVVY---EVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++.||+|+||+||+|++.   .+++.||||++.+..   .....+.+|+++|++++|+|      ||+++++|+.++++|
T Consensus        29 ~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~l~~~~~~~~~~~  102 (304)
T 3ubd_A           29 LKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPF------IVKLHYAFQTEGKLY  102 (304)
T ss_dssp             EEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTT------EECEEEEEEETTEEE
T ss_pred             EEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCC------CCeEEEEEEECCEEE
Confidence            367999999999999874   367899999997532   22346788999999999888      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |||||| ||+|.+++.+.+  .+++..++.++.|++.|                       |+|||++||+|||+||+||
T Consensus       103 ivmEy~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~a-----------------------L~ylH~~~IiHRDlKp~NI  157 (304)
T 3ubd_A          103 LILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALA-----------------------LDHLHSLGIIYRDLKPENI  157 (304)
T ss_dssp             EEECCCTTCEEHHHHHHHC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSSCCGGGE
T ss_pred             EEEEcCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCcCCCCCHHHe
Confidence            999999 999999998875  68888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       158 Ll~-----------------------------------------------------------------------------  160 (304)
T 3ubd_A          158 LLD-----------------------------------------------------------------------------  160 (304)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            886                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                        ..+.+||+|||+++..   .....+.+||+.|||||++.+.+++.++|+||+||++|+|+||
T Consensus       161 ------------------~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG  222 (304)
T 3ubd_A          161 ------------------EEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTG  222 (304)
T ss_dssp             ------------------TTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHS
T ss_pred             ------------------CCCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhC
Confidence                              2457999999999753   2334568999999999999999999999999999999999999


Q ss_pred             cccccccCCCceee
Q psy2006         311 ITLMARKTKTKYFY  324 (351)
Q Consensus       311 ~~pf~~~~~~~~~~  324 (351)
                      .+||.+.+..+++.
T Consensus       223 ~~PF~~~~~~~~~~  236 (304)
T 3ubd_A          223 TLPFQGKDRKETMT  236 (304)
T ss_dssp             SCSSCCSSHHHHHH
T ss_pred             CCCCCCcCHHHHHH
Confidence            99999988777654

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=2e-43  Score=323.90  Aligned_cols=199  Identities=18%  Similarity=0.229  Sum_probs=165.4

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++||+|+||+||+|+++     .+++.||||+++.. ....+.+.+|+++|++|+|+|      ||++++++..++.+||
T Consensus        19 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~Hpn------IV~l~g~~~~~~~~~l   92 (299)
T 4asz_A           19 RELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEH------IVKFYGVCVEGDPLIM   92 (299)
T ss_dssp             EEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTT------BCCEEEEECSSSSEEE
T ss_pred             eEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCC------CccEEEEEeeCCEEEE
Confidence            67999999999999864     36889999999754 344567899999999999888      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcC-----------CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccc
Q psy2006          76 AFEIL-GLSVFDFLKENN-----------YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKR  143 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~-----------~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i  143 (351)
                      ||||| +|+|.++++..+           ...+++..+..++.|++.|                       |.|||+++|
T Consensus        93 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~g-----------------------l~yLH~~~i  149 (299)
T 4asz_A           93 VFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAG-----------------------MVYLASQHF  149 (299)
T ss_dssp             EEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTC
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCc
Confidence            99999 999999998753           2346666666666666666                       999999999


Q ss_pred             cccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         144 EVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       144 ~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                      +|||+|+.||.|.                                                                   
T Consensus       150 iHRDlKp~NILl~-------------------------------------------------------------------  162 (299)
T 4asz_A          150 VHRDLATRNCLVG-------------------------------------------------------------------  162 (299)
T ss_dssp             CCSCCSGGGEEEC-------------------------------------------------------------------
T ss_pred             ccCccCHhhEEEC-------------------------------------------------------------------
Confidence            9999999999886                                                                   


Q ss_pred             CCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCcccee
Q psy2006         224 LPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVW  298 (351)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Diw  298 (351)
                                                  ....+||+|||+++....     ......||+.|||||++.+..++.++|||
T Consensus       163 ----------------------------~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVw  214 (299)
T 4asz_A          163 ----------------------------ENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVW  214 (299)
T ss_dssp             ----------------------------GGGCEEECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHH
T ss_pred             ----------------------------CCCcEEECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHH
Confidence                                        246799999999975322     12335689999999999999999999999


Q ss_pred             eeeeeeEeecc-ccccccccCCCceee
Q psy2006         299 SIGCIIFELYL-GITLMARKTKTKYFY  324 (351)
Q Consensus       299 slG~~l~~l~t-G~~pf~~~~~~~~~~  324 (351)
                      ||||++|||+| |+.||.+.+..+++.
T Consensus       215 S~Gvvl~Ellt~G~~Pf~~~~~~~~~~  241 (299)
T 4asz_A          215 SLGVVLWEIFTYGKQPWYQLSNNEVIE  241 (299)
T ss_dssp             HHHHHHHHHHTTTCCTTTTSCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence            99999999998 999999988777653

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.8e-43  Score=334.22  Aligned_cols=196  Identities=22%  Similarity=0.381  Sum_probs=168.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC------Ce
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH------GH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~------~~   72 (351)
                      ++||+|+||+||+|+++.+|+.||||++.+..   ...+.+.+|+++|+.|+|+|      ||+++++|...      ++
T Consensus        60 ~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~Hpn------Iv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           60 ETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDN------IIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTT------BCCEEEECCCSSCTTTCCC
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCC------cceEeeeeecccccccCCE
Confidence            67999999999999999999999999997542   33456789999999999888      99999998643      58


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +|||||||+|+|.+++...+  ++++..++.++.||+.|                       |+|||++||+|||+||+|
T Consensus       134 ~~ivmE~~~g~L~~~i~~~~--~l~~~~~~~~~~qil~a-----------------------l~ylH~~~iiHRDlKP~N  188 (398)
T 4b99_A          134 VYVVLDLMESDLHQIIHSSQ--PLTLEHVRYFLYQLLRG-----------------------LKYMHSAQVIHRDLKPSN  188 (398)
T ss_dssp             EEEEEECCSEEHHHHHTSSS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCCGGG
T ss_pred             EEEEEeCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCcCcCCCcCccc
Confidence            99999999889999998764  68888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       189 Il~~----------------------------------------------------------------------------  192 (398)
T 4b99_A          189 LLVN----------------------------------------------------------------------------  192 (398)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             cccC----------------------------------------------------------------------------
Confidence            9876                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCccee-------ccccccccccceeeCceeeecC-CCCCccceeeeeeee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD-------DEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCII  304 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l  304 (351)
                                         ..+.+||+|||+++..       .....+.+||+.|+|||++.+. .++.++||||+||++
T Consensus       193 -------------------~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il  253 (398)
T 4b99_A          193 -------------------ENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIF  253 (398)
T ss_dssp             -------------------TTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHH
T ss_pred             -------------------CCCCEEEeecceeeecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHH
Confidence                               2467999999998752       1233567999999999998875 468999999999999


Q ss_pred             EeeccccccccccCCCcee
Q psy2006         305 FELYLGITLMARKTKTKYF  323 (351)
Q Consensus       305 ~~l~tG~~pf~~~~~~~~~  323 (351)
                      |+|++|.+||.+.+..+.+
T Consensus       254 ~ell~G~~pF~g~~~~~~l  272 (398)
T 4b99_A          254 GEMLARRQLFPGKNYVHQL  272 (398)
T ss_dssp             HHHHHTSCSSCCSSHHHHH
T ss_pred             HHHHHCCCCCCCCCHHHHH
Confidence            9999999999988766554

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=3.9e-43  Score=349.41  Aligned_cols=195  Identities=17%  Similarity=0.223  Sum_probs=164.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHH---HHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEIN---ALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~---~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|+++.+|+.||||++.+..    .....+.+|..   +++.+.|+|      ||+++++|.+.+++|
T Consensus       195 k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~------IV~l~~~f~~~~~ly  268 (689)
T 3v5w_A          195 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPF------IVCMSYAFHTPDKLS  268 (689)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTT------BCCEEEEEECSSEEE
T ss_pred             EEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCC------EeEEEEEEEECCEEE
Confidence            67999999999999999999999999997542    22233445544   444555555      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |||||| ||+|.+++.+.+  .+++..++.++.||+.|                       |+|||++||+|||+||.||
T Consensus       269 lVmEy~~GGdL~~~l~~~~--~l~E~~a~~y~~qIl~a-----------------------L~yLH~~gIiHRDLKPeNI  323 (689)
T 3v5w_A          269 FILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILG-----------------------LEHMHNRFVVYRDLKPANI  323 (689)
T ss_dssp             EEECCCCSCBHHHHHHHHC--CCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECCCCSGGGE
T ss_pred             EEEecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCchHHe
Confidence            999999 999999998875  57888888888888877                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .|.                                                                             
T Consensus       324 Lld-----------------------------------------------------------------------------  326 (689)
T 3v5w_A          324 LLD-----------------------------------------------------------------------------  326 (689)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EEe-----------------------------------------------------------------------------
Confidence            987                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCccee-ccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD-DEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                        ..+.+||+|||++... .....+.+|||.|||||++.+ .+|+.++|+|||||++|+|++|.
T Consensus       327 ------------------~~G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~  388 (689)
T 3v5w_A          327 ------------------EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGH  388 (689)
T ss_dssp             ------------------TTSCEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------CCCCEEecccceeeecCCCCCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence                              2467999999999764 334467899999999999974 57999999999999999999999


Q ss_pred             ccccccCCCce
Q psy2006         312 TLMARKTKTKY  322 (351)
Q Consensus       312 ~pf~~~~~~~~  322 (351)
                      +||.+.+..+.
T Consensus       389 ~PF~~~~~~~~  399 (689)
T 3v5w_A          389 SPFRQHKTKDK  399 (689)
T ss_dssp             CTTCGGGCCCH
T ss_pred             CCCCCCChHHH
Confidence            99988765543

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=8.8e-43  Score=320.08  Aligned_cols=192  Identities=21%  Similarity=0.283  Sum_probs=159.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|++   ...||||+++..   ....+.+.+|+++|++++|+|      ||++++++. ++++|||||
T Consensus        42 ~~iG~G~fG~Vy~~~~---~~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpN------IV~l~g~~~-~~~~~iVmE  111 (307)
T 3omv_A           42 TRIGSGSFGTVYKGKW---HGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVN------ILLFMGYMT-KDNLAIVTQ  111 (307)
T ss_dssp             EECCCCSSSEEEEEES---SSEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTT------BCCEEEEEC-SSSCEEEEE
T ss_pred             eEEeeCCCcEEEEEEE---CCcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCC------EeeEEEEEE-CCeEEEEEE
Confidence            5799999999999984   346999999643   334567889999999999888      999999875 467999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      || +|+|.+++.... .++++..+..++.|++.|                       |+|||+++|+|||+|+.||.|. 
T Consensus       112 y~~gGsL~~~l~~~~-~~l~~~~~~~i~~qia~g-----------------------L~yLH~~~IiHRDlKp~NILl~-  166 (307)
T 3omv_A          112 WCEGSSLYKHLHVQE-TKFQMFQLIDIARQTAQG-----------------------MDYLHAKNIIHRDMKSNNIFLH-  166 (307)
T ss_dssp             CCSSCBHHHHHHTSC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCSCCCSSSEEEE-
T ss_pred             cCCCCCHHHHHhhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccCCccCHHHEEEC-
Confidence            99 999999998764 368888888888888888                       9999999999999999999987 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (307)
T 3omv_A          167 --------------------------------------------------------------------------------  166 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeeec---CCCCCccceeeeeeeeEeecc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwslG~~l~~l~t  309 (351)
                                    ....+||+|||+++...     ......+||+.|||||++.+   .+++.++|||||||++|||+|
T Consensus       167 --------------~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Ellt  232 (307)
T 3omv_A          167 --------------EGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMT  232 (307)
T ss_dssp             --------------TTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHH
Confidence                          24579999999997532     22345789999999999864   358999999999999999999


Q ss_pred             ccccccccCCCce
Q psy2006         310 GITLMARKTKTKY  322 (351)
Q Consensus       310 G~~pf~~~~~~~~  322 (351)
                      |+.||.+.+..+.
T Consensus       233 g~~Pf~~~~~~~~  245 (307)
T 3omv_A          233 GELPYSHINNRDQ  245 (307)
T ss_dssp             SSCTTTTCCCHHH
T ss_pred             CCCCCCCCChHHH
Confidence            9999988766544

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=1.4e-42  Score=322.45  Aligned_cols=198  Identities=19%  Similarity=0.214  Sum_probs=160.4

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++||+|+||+||+|+++     .+++.||||+++.. ....+.+.+|+++|++|+|+|      ||++++++...+.+||
T Consensus        47 ~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~Hpn------IV~l~g~~~~~~~~~l  120 (329)
T 4aoj_A           47 WELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQH------IVRFFGVCTEGRPLLM  120 (329)
T ss_dssp             EEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTT------BCCEEEEECSSSSEEE
T ss_pred             EEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCC------CCcEEEEEEECCEEEE
Confidence            57999999999999864     46899999999753 344567899999999999888      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCC-------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc
Q psy2006          76 AFEIL-GLSVFDFLKENNY-------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK  141 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~-------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  141 (351)
                      ||||| +|+|.++++....             .++++..+..++.|++.|                       |.|||++
T Consensus       121 V~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~g-----------------------l~yLH~~  177 (329)
T 4aoj_A          121 VFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAG-----------------------MVYLAGL  177 (329)
T ss_dssp             EEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHH-----------------------HHHHHHT
T ss_pred             EEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHH-----------------------HHHHhcC
Confidence            99999 9999999987532             235555555555555555                       9999999


Q ss_pred             cccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         142 KREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       142 ~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                      +|+|||+|+.||.|.                                                                 
T Consensus       178 ~iiHRDLKp~NILl~-----------------------------------------------------------------  192 (329)
T 4aoj_A          178 HFVHRDLATRNCLVG-----------------------------------------------------------------  192 (329)
T ss_dssp             TCCCSCCCGGGEEEE-----------------------------------------------------------------
T ss_pred             CeecccccHhhEEEC-----------------------------------------------------------------
Confidence            999999999999987                                                                 


Q ss_pred             CCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccc
Q psy2006         222 DKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCD  296 (351)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~D  296 (351)
                                                    ....+||+|||+++....     ......||+.|||||++.+..++.++|
T Consensus       193 ------------------------------~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sD  242 (329)
T 4aoj_A          193 ------------------------------QGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESD  242 (329)
T ss_dssp             ------------------------------TTTEEEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHH
T ss_pred             ------------------------------CCCcEEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCcccc
Confidence                                          245799999999875321     223467999999999999999999999


Q ss_pred             eeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         297 VWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       297 iwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      ||||||++|||+| |+.||.+.+..+++
T Consensus       243 vwS~Gvvl~Ellt~G~~Pf~~~~~~~~~  270 (329)
T 4aoj_A          243 VWSFGVVLWEIFTYGKQPWYQLSNTEAI  270 (329)
T ss_dssp             HHHHHHHHHHHHTTSCCTTCSSCHHHHH
T ss_pred             ccchHHHHHHHHcCCCCCCCCCCHHHHH
Confidence            9999999999998 99999988776655

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.1e-42  Score=320.24  Aligned_cols=198  Identities=16%  Similarity=0.229  Sum_probs=165.2

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++||+|+||+||+|...     .+++.||||+++..  ....+.+.+|+.+|++|+|+|      ||++++++..++.+|
T Consensus        32 ~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpN------IV~l~g~~~~~~~~~  105 (308)
T 4gt4_A           32 EELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPN------VVCLLGVVTKDQPLS  105 (308)
T ss_dssp             EEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSCE
T ss_pred             eEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCC------CCCcceEEEECCEEE
Confidence            68999999999999853     46789999999653  234567899999999999888      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccc
Q psy2006          75 IAFEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN  139 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH  139 (351)
                      |||||| +|||.+++.....              ..+++..+..++.|++.|                       |+|||
T Consensus       106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~g-----------------------l~yLH  162 (308)
T 4gt4_A          106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAG-----------------------MEYLS  162 (308)
T ss_dssp             EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHH-----------------------HHHHH
T ss_pred             EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHH-----------------------HHHHH
Confidence            999999 9999999976431              235566666666666666                       99999


Q ss_pred             cccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCC
Q psy2006         140 KKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHP  219 (351)
Q Consensus       140 ~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~  219 (351)
                      +++++|||+|+.||.|.                                                               
T Consensus       163 ~~~iiHRDLK~~NILl~---------------------------------------------------------------  179 (308)
T 4gt4_A          163 SHHVVHKDLATRNVLVY---------------------------------------------------------------  179 (308)
T ss_dssp             HTTCCCSCCSGGGEEEC---------------------------------------------------------------
T ss_pred             hCCCCCCCccccceEEC---------------------------------------------------------------
Confidence            99999999999999987                                                               


Q ss_pred             CCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCc
Q psy2006         220 FFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQP  294 (351)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~  294 (351)
                                                      ....+||+|||+++....     ......||+.|||||++.+..++.+
T Consensus       180 --------------------------------~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~k  227 (308)
T 4gt4_A          180 --------------------------------DKLNVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSID  227 (308)
T ss_dssp             --------------------------------GGGCEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHH
T ss_pred             --------------------------------CCCCEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCcc
Confidence                                            245799999999875321     2345689999999999999999999


Q ss_pred             cceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         295 CDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       295 ~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +|||||||++||++| |..||.+.+..+++
T Consensus       228 sDVwSfGvvl~El~t~g~~Pf~~~~~~~~~  257 (308)
T 4gt4_A          228 SDIWSYGVVLWEVFSYGLQPYCGYSNQDVV  257 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTCCTTTTCCHHHHH
T ss_pred             chhhhHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            999999999999998 89999998877665

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=1e-42  Score=346.18  Aligned_cols=223  Identities=20%  Similarity=0.268  Sum_probs=184.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+||+||+|+++.+|+.||+|++... ....+.+.+|+++|+.|+|+|      |++++++|..++++|||||||
T Consensus       163 ~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpn------Iv~l~~~~~~~~~~~iv~E~~  236 (573)
T 3uto_A          163 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT------LVNLHDAFEDDNEMVMIYEFM  236 (573)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTT------BCCEEEEEECSSEEEEEEECC
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCC------CCeEEEEEEECCEEEEEEeec
Confidence            5799999999999999999999999999764 344567889999999999888      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       ||+|++++.... ..+++..++.++.||+.|                       |+|||+++|+|||+|+.|+++.+  
T Consensus       237 ~gg~L~~~i~~~~-~~l~e~~~~~~~~qi~~a-----------------------l~ylH~~~iiHRDlKp~Nill~~--  290 (573)
T 3uto_A          237 SGGELFEKVADEH-NKMSEDEAVEYMRQVCKG-----------------------LCHMHENNYVHLDLKPENIMFTT--  290 (573)
T ss_dssp             CCCBHHHHHTCTT-SCEEHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEESS--
T ss_pred             CCCcHHHHHHHhC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeccCChhhccccC--
Confidence             999999987543 367888888888888888                       99999999999999999998861  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       291 --------------------------------------------------------------------------------  290 (573)
T 3uto_A          291 --------------------------------------------------------------------------------  290 (573)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                 ...+.+||+|||++....  ......+||+.|||||++.+.+++.++||||+||++|+|++|.+||.+.
T Consensus       291 -----------~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~  359 (573)
T 3uto_A          291 -----------KRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE  359 (573)
T ss_dssp             -----------SSCCCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             -----------CCCCCEEEeeccceeEccCCCceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCc
Confidence                       013579999999998643  3345678999999999999999999999999999999999999999998


Q ss_pred             CCCceeee-cccCCcccccccccccccCccC
Q psy2006         318 TKTKYFYH-GKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       318 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      +..+++.. ....|.........+++++++|
T Consensus       360 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dl  390 (573)
T 3uto_A          360 NDDETLRNVKSCDWNMDDSAFSGISEDGKDF  390 (573)
T ss_dssp             SHHHHHHHHHTTCCCCCSGGGTTSCHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccccCCCHHHHHH
Confidence            88777642 1222332233333566666654

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=6.1e-42  Score=314.28  Aligned_cols=190  Identities=22%  Similarity=0.264  Sum_probs=151.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-------
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-------   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-------   71 (351)
                      ++.||+|+||+||+|+++.+++.||||++...  ....+.+.+|+++|++|+|+|      ||+++++|...+       
T Consensus        10 ~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~Hpn------IV~~~~~~~~~~~~~~~~~   83 (299)
T 4g31_A           10 IQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG------IVRYFNAWLEKNTTEKLQP   83 (299)
T ss_dssp             EEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTT------BCCEEEEEEEEC-------
T ss_pred             eeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCC------CCeEEEEEEecCccccccc
Confidence            36899999999999999999999999999643  334567889999999999888      999999997654       


Q ss_pred             -----eEEEEEecc-CCCHHHHHHhcCCC-CCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccc
Q psy2006          72 -----HMCIAFEIL-GLSVFDFLKENNYL-PYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKRE  144 (351)
Q Consensus        72 -----~~~lV~E~~-g~sL~~~l~~~~~~-~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~  144 (351)
                           ++||||||| ||+|.+++...... ..++..++.++.|++.|                       |+|||++||+
T Consensus        84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~a-----------------------l~ylH~~~Ii  140 (299)
T 4g31_A           84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEA-----------------------VEFLHSKGLM  140 (299)
T ss_dssp             ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCC
T ss_pred             cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHH-----------------------HHHHHHCcCc
Confidence                 589999999 99999999876422 12344566777777777                       9999999999


Q ss_pred             ccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         145 VRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       145 h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      |||+||+||.|.                                                                    
T Consensus       141 HRDlKp~NILl~--------------------------------------------------------------------  152 (299)
T 4g31_A          141 HRDLKPSNIFFT--------------------------------------------------------------------  152 (299)
T ss_dssp             CCCCCGGGEEEC--------------------------------------------------------------------
T ss_pred             cccCcHHHeEEC--------------------------------------------------------------------
Confidence            999999999886                                                                    


Q ss_pred             CchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc---------------ccccccccceeeCceeeecC
Q psy2006         225 PSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---------------HHSTIVSTRHYRAPEVILEL  289 (351)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---------------~~~~~~gt~~y~aPE~~~~~  289 (351)
                                                 ..+.+||+|||+++....               .....+||+.|||||++.+.
T Consensus       153 ---------------------------~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~  205 (299)
T 4g31_A          153 ---------------------------MDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGN  205 (299)
T ss_dssp             ---------------------------TTCCEEECCCCCC--------------------------CCCTTSCHHHHTTC
T ss_pred             ---------------------------CCCcEEEccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCC
Confidence                                       235689999998865221               12345799999999999999


Q ss_pred             CCCCccceeeeeeeeEeecccccccccc
Q psy2006         290 GWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       290 ~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                      +++.++|||||||++|+|++   ||.+.
T Consensus       206 ~y~~~~DiwSlGvilyell~---Pf~~~  230 (299)
T 4g31_A          206 SYSHKVDIFSLGLILFELLY---PFSTQ  230 (299)
T ss_dssp             CCCTHHHHHHHHHHHHHHHS---CCSSH
T ss_pred             CCCCHHHHHHHHHHHHHHcc---CCCCc
Confidence            99999999999999999996   78654

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=6.6e-41  Score=315.25  Aligned_cols=210  Identities=20%  Similarity=0.267  Sum_probs=148.8

Q ss_pred             ccccCcccceEEEEEEee---cCcEEEEEEecchhhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYE---VDSVVALKIIKNVEKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~---~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|+++.   +++.||+|++... .....+.+|+++|+.+. |+|      |++++++|..++++||||
T Consensus        27 ~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~-~~~~~~~~E~~~l~~~~~h~n------Iv~l~~~~~~~~~~~lvm   99 (361)
T 4f9c_A           27 DKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT-SHPIRIAAELQCLTVAGGQDN------VMGVKYCFRKNDHVVIAM   99 (361)
T ss_dssp             EEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT-SCHHHHHHHHHHHHHTCSBTT------BCCCSEEEEETTEEEEEE
T ss_pred             EEEecccCcEEEEEEEcccCCCCCEEEEEEEccc-cCHHHHHHHHHHHHHhcCCCC------CceEEEEEEECCEEEEEE
Confidence            679999999999999863   5789999999753 33456789999999984 666      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE--
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR--  154 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~--  154 (351)
                      ||| |++|.++++     .+++..++.++.|++.|                       |+|||++||+|||+||+|+.  
T Consensus       100 E~~~g~~L~~~~~-----~l~~~~~~~~~~qll~a-----------------------l~ylH~~gIiHRDiKPeNiLl~  151 (361)
T 4f9c_A          100 PYLEHESFLDILN-----SLSFQEVREYMLNLFKA-----------------------LKRIHQFGIVHRDVKPSNFLYN  151 (361)
T ss_dssp             ECCCCCCHHHHHT-----TCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEEE
T ss_pred             eCCCcccHHHHHc-----CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeCcCCHHHeEEe
Confidence            999 899999984     37888888888888888                       99999999999999999874  


Q ss_pred             -------EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         155 -------LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       155 -------l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                             |+|||+|+...........   +...+                                              
T Consensus       152 ~~~~~~kl~DFGla~~~~~~~~~~~~---~~~~~----------------------------------------------  182 (361)
T 4f9c_A          152 RRLKKYALVDFGLAQGTHDTKIELLK---FVQSE----------------------------------------------  182 (361)
T ss_dssp             TTTTEEEECCCTTCEECTTCSCGGGG---GC-------------------------------------------------
T ss_pred             CCCCeEEECcCCCCcccCCccccccc---ccccc----------------------------------------------
Confidence                   4455554332111100000   00000                                              


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCC-CCCccceeeeeeeeEe
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFE  306 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~~l~~  306 (351)
                                         ...  .......+.  .+........+.+||+.|+|||++.+.+ ++.++||||+||++|+
T Consensus       183 -------------------~~~--~~~~~~~~~--~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~e  239 (361)
T 4f9c_A          183 -------------------AQQ--ERCSQNKCS--ICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLS  239 (361)
T ss_dssp             ----------------------------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHH
T ss_pred             -------------------ccc--ccccccccc--ccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHH
Confidence                               000  000000000  0000112234568999999999998764 7999999999999999


Q ss_pred             eccccccccccC
Q psy2006         307 LYLGITLMARKT  318 (351)
Q Consensus       307 l~tG~~pf~~~~  318 (351)
                      |+||..||.+.+
T Consensus       240 ll~G~~Pf~~~~  251 (361)
T 4f9c_A          240 LLSGRYPFYKAS  251 (361)
T ss_dssp             HHHTCSSSSCCS
T ss_pred             HHHCCCCCCCCC
Confidence            999999996554

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=2.7e-40  Score=309.59  Aligned_cols=212  Identities=19%  Similarity=0.241  Sum_probs=160.4

Q ss_pred             ccccCcccceEEEEEEeec-----CcEEEEEEecch--hhhhHHHHHHHHHHHHhCC-CCCCCCcceeeeeeeEeeC-Ce
Q psy2006           2 CSLNCVASNHVCTNVVYEV-----DSVVALKIIKNV--EKYREAARLEINALQKIGE-KDPNGRHLCVKMLDWFDYH-GH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~-----~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h-~~~~g~~~Iv~l~~~f~~~-~~   72 (351)
                      ++||+|+||+||+|.+..+     ++.||+|++...  ....+.+.+|+++|+++.| +|      ||++++++... +.
T Consensus        70 ~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpn------IV~l~g~~~~~~~~  143 (353)
T 4ase_A           70 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN------VVNLLGACTKPGGP  143 (353)
T ss_dssp             EEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECCTTSC
T ss_pred             eEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCc------EEEEEEEEEecCCE
Confidence            5799999999999997654     368999999753  2345678899999999986 45      99999999765 57


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +||||||| +|+|.++|+.......+.....         .......+++..+..++.|++.||+|||+++++|||+|+.
T Consensus       144 ~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~  214 (353)
T 4ase_A          144 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAP---------EDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAAR  214 (353)
T ss_dssp             CEEEEECCTTEEHHHHHHHTGGGBCCC----------------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred             EEEEEEcCCCCCHHHHHHhcccccccccccc---------hhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCcc
Confidence            99999999 9999999986532110000000         0000112344444444444445599999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.|.                                                                           
T Consensus       215 NILl~---------------------------------------------------------------------------  219 (353)
T 4ase_A          215 NILLS---------------------------------------------------------------------------  219 (353)
T ss_dssp             GEEEC---------------------------------------------------------------------------
T ss_pred             ceeeC---------------------------------------------------------------------------
Confidence            99887                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                          ....+||+|||+++....     ......||+.|||||++.+..++.++|||||||++||
T Consensus       220 --------------------~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~E  279 (353)
T 4ase_A          220 --------------------EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE  279 (353)
T ss_dssp             --------------------GGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             --------------------CCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHH
Confidence                                246799999999975321     1234678999999999999999999999999999999


Q ss_pred             ecc-ccccccccCCCcee
Q psy2006         307 LYL-GITLMARKTKTKYF  323 (351)
Q Consensus       307 l~t-G~~pf~~~~~~~~~  323 (351)
                      |+| |..||.+.+..+.+
T Consensus       280 l~t~G~~Pf~~~~~~~~~  297 (353)
T 4ase_A          280 IFSLGASPYPGVKIDEEF  297 (353)
T ss_dssp             HTTTSCCSSTTCCCSHHH
T ss_pred             HHhCCCCCCCCCCHHHHH
Confidence            998 99999987765544

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=3e-40  Score=303.93  Aligned_cols=191  Identities=15%  Similarity=0.168  Sum_probs=154.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC----eEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG----HMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~----~~~lV~   77 (351)
                      ++||+|+||+||+|+  .+|+.||||+++...........|+..+.+++|+|      ||++++++..++    ++||||
T Consensus         9 ~~iG~G~fG~Vy~~~--~~g~~VAvK~l~~~~~~~~~~e~Ei~~~~~l~HpN------Iv~l~g~~~~~~~~~~~~~lV~   80 (303)
T 3hmm_A            9 ESIGKGRFGEVWRGK--WRGEEVAVKIFSSREERSWFREAEIYQTVMLRHEN------ILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             EEEEECSSSEEEEEE--ETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTT------BCCEEEEEEEECSSSEEEEEEE
T ss_pred             EEEeeCCCeEEEEEE--ECCEEEEEEEECccchhhHHHHHHHHHHhcCCCCC------CCcEEEEEEecCCCceEEEEEe
Confidence            579999999999998  47999999999765433334455777777888877      999999998765    689999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc--------ccccccc
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK--------KREVRRV  148 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~--------~i~h~d~  148 (351)
                      ||| +|+|.++++..   ++++..+..++.|++.|                       |.|||++        +|+|||+
T Consensus        81 Ey~~~gsL~~~l~~~---~l~~~~~~~i~~~ia~g-----------------------l~ylH~~~~~~~~~~~IiHRDl  134 (303)
T 3hmm_A           81 DYHEHGSLFDYLNRY---TVTVEGMIKLALSTASG-----------------------LAHLHMEIVGTQGKPAIAHRDL  134 (303)
T ss_dssp             ECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHH-----------------------HHHHHCCBCSTTCBCCEECSCC
T ss_pred             cCCCCCcHHHHHHhC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHhhhhccCCCCEeeccC
Confidence            999 89999999875   47777788888888887                       9999987        8999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      |+.||.|.                                                                        
T Consensus       135 Kp~NILl~------------------------------------------------------------------------  142 (303)
T 3hmm_A          135 KSKNILVK------------------------------------------------------------------------  142 (303)
T ss_dssp             CGGGEEEC------------------------------------------------------------------------
T ss_pred             CcccEEEC------------------------------------------------------------------------
Confidence            99999886                                                                        


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-------cccccccceeeCceeeecC------CCCCcc
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-------HSTIVSTRHYRAPEVILEL------GWAQPC  295 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-------~~~~~gt~~y~aPE~~~~~------~~~~~~  295 (351)
                                             ..+.+||+|||+++.....       ....+||+.|||||++.+.      .++.++
T Consensus       143 -----------------------~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~  199 (303)
T 3hmm_A          143 -----------------------KNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRA  199 (303)
T ss_dssp             -----------------------TTSCEEECCCTTCEEEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHH
T ss_pred             -----------------------CCCCEEEEeCCCCccccCCCCceeeecccccccccccCHHHhcccccccCCccChhH
Confidence                                   2457999999998764321       1245799999999998754      357789


Q ss_pred             ceeeeeeeeEeeccccccccccCCCc
Q psy2006         296 DVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       296 DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                      |||||||++|||+||.+||......+
T Consensus       200 DVwS~Gvvl~El~tg~~~~~~~~~~~  225 (303)
T 3hmm_A          200 DIYAMGLVFWEIARRCSIGGIHEDYQ  225 (303)
T ss_dssp             HHHHHHHHHHHHHHTBCBTTBCCCCC
T ss_pred             hhhhHHHHHHHHHHCCCCCCcccccc
Confidence            99999999999999999887655443

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=1e-37  Score=293.96  Aligned_cols=201  Identities=24%  Similarity=0.321  Sum_probs=172.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh-------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK-------YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~-------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|+++.+++.||+|++.....       ..+.+.+|+.+|+.+.|+|      |++++++|...+++|
T Consensus        18 ~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpn------Iv~l~~~~~~~~~~~   91 (361)
T 2yab_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPN------IITLHDVYENRTDVV   91 (361)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTT------BCCEEEEEECSSEEE
T ss_pred             eEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcC------CCcEEEEEEeCCEEE
Confidence            579999999999999999999999999975321       2467889999999999877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ |++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.||
T Consensus        92 lv~e~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~a-----------------------L~~LH~~givHrDlkp~NI  146 (361)
T 2yab_A           92 LILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDG-----------------------VNYLHTKKIAHFDLKPENI  146 (361)
T ss_dssp             EEEECCCSCBHHHHHTTCS--CCBHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGE
T ss_pred             EEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHE
Confidence            999999 999999997654  57888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+-|.                                                                         
T Consensus       147 ll~~~~~-------------------------------------------------------------------------  153 (361)
T 2yab_A          147 MLLDKNI-------------------------------------------------------------------------  153 (361)
T ss_dssp             EESCTTS-------------------------------------------------------------------------
T ss_pred             EEeCCCC-------------------------------------------------------------------------
Confidence            8863110                                                                         


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                        ....+||+|||++.....  .....+||+.|+|||++.+.+++.++|+||+||++|+|++|.
T Consensus       154 ------------------~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~  215 (361)
T 2yab_A          154 ------------------PIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGA  215 (361)
T ss_dssp             ------------------SSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSC
T ss_pred             ------------------CccCEEEEecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCC
Confidence                              123699999999876432  335678999999999998889999999999999999999999


Q ss_pred             ccccccCCCceee
Q psy2006         312 TLMARKTKTKYFY  324 (351)
Q Consensus       312 ~pf~~~~~~~~~~  324 (351)
                      .||.+.+..+.+.
T Consensus       216 ~Pf~~~~~~~~~~  228 (361)
T 2yab_A          216 SPFLGDTKQETLA  228 (361)
T ss_dssp             CSSCCSSHHHHHH
T ss_pred             CCCCCCCHHHHHH
Confidence            9999988776653

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=291.00  Aligned_cols=196  Identities=18%  Similarity=0.286  Sum_probs=166.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|+++.+++.||||++.+.    ....+...+|.++|+.+ .|++      |++++++|...+++|+|
T Consensus        29 ~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~------Iv~l~~~~~~~~~~~lv  102 (353)
T 3txo_A           29 RVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPF------LTQLFCCFQTPDRLFFV  102 (353)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTT------BCCEEEEEECSSEEEEE
T ss_pred             EEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCc------eeeEEEEEEeCCEEEEE
Confidence            6799999999999999999999999999753    23345677899999988 4666      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ |++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.||.+
T Consensus       103 ~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~givHrDlkp~NILl  157 (353)
T 3txo_A          103 MEFVNGGDLMFHIQKSR--RFDEARARFYAAEIISA-----------------------LMFLHDKGIIYRDLKLDNVLL  157 (353)
T ss_dssp             EECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCCGGGEEE
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCcccCCCHHHEEE
Confidence            9999 899999998865  57888888888888887                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       158 ~-------------------------------------------------------------------------------  158 (353)
T 3txo_A          158 D-------------------------------------------------------------------------------  158 (353)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   .......+||+.|+|||++.+..++.++|+|||||++|+|++|..
T Consensus       159 ----------------~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~  222 (353)
T 3txo_A          159 ----------------HEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHA  222 (353)
T ss_dssp             ----------------TTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------CCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCC
Confidence                            2457999999998752   223456789999999999998899999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       223 Pf~~~~~~~~~  233 (353)
T 3txo_A          223 PFEAENEDDLF  233 (353)
T ss_dssp             SSCCSSHHHHH
T ss_pred             CCCCCCHHHHH
Confidence            99988776654

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=4.7e-37  Score=286.84  Aligned_cols=196  Identities=19%  Similarity=0.296  Sum_probs=170.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|+++.+++.||+|++.+..    .....+.+|+++|+.+.|++      |++++++|...+++|+||
T Consensus        11 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~l~~~~~~~~~~~lv~   84 (337)
T 1o6l_A           11 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF------LTALKYAFQTHDRLCFVM   84 (337)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCc------CcceEEEEEeCCEEEEEE
Confidence            67999999999999999999999999997532    23456788999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ |++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.||.+.
T Consensus        85 E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDlkp~NIll~  139 (337)
T 1o6l_A           85 EYANGGELFFHLSRER--VFTEERARFYGAEIVSA-----------------------LEYLHSRDVVYRDIKLENLMLD  139 (337)
T ss_dssp             ECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCCGGGEEEC
T ss_pred             eCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCcCCHHHEEEC
Confidence            999 889999998765  57888888888888887                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (337)
T 1o6l_A          140 --------------------------------------------------------------------------------  139 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ..+.+||+|||++...   .......+||+.|+|||++.+.+++.++|+|||||++|+|++|..|
T Consensus       140 ---------------~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~P  204 (337)
T 1o6l_A          140 ---------------KDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLP  204 (337)
T ss_dssp             ---------------TTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCS
T ss_pred             ---------------CCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCC
Confidence                           2357999999998752   2234567899999999999999999999999999999999999999


Q ss_pred             ccccCCCcee
Q psy2006         314 MARKTKTKYF  323 (351)
Q Consensus       314 f~~~~~~~~~  323 (351)
                      |.+.+..+.+
T Consensus       205 f~~~~~~~~~  214 (337)
T 1o6l_A          205 FYNQDHERLF  214 (337)
T ss_dssp             SCCSSHHHHH
T ss_pred             CCCCCHHHHH
Confidence            9887765544

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=6.8e-38  Score=299.76  Aligned_cols=195  Identities=19%  Similarity=0.266  Sum_probs=169.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|+++.+++.||+|++.+..    ...+.+.+|+.+|+.+.|++      |++++++|...+++||||
T Consensus        75 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~------Iv~l~~~~~~~~~~~lV~  148 (410)
T 3v8s_A           75 KVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPW------VVQLFYAFQDDRYLYMVM  148 (410)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCC------CCeEEEEEEECCEEEEEE
Confidence            57999999999999999999999999997532    22345778999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||| ||+|.++++..   .+++..++.++.|++.|                       |+|||++|++|||+|+.||.+.
T Consensus       149 E~~~gg~L~~~l~~~---~~~e~~~~~~~~qi~~a-----------------------L~~LH~~givHrDLKp~NILl~  202 (410)
T 3v8s_A          149 EYMPGGDLVNLMSNY---DVPEKWARFYTAEVVLA-----------------------LDAIHSMGFIHRDVKPDNMLLD  202 (410)
T ss_dssp             CCCTTEEHHHHHHHC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC
T ss_pred             eCCCCCcHHHHHHcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeccCCHHHeeEC
Confidence            999 99999999764   47888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       203 --------------------------------------------------------------------------------  202 (410)
T 3v8s_A          203 --------------------------------------------------------------------------------  202 (410)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCC----CCCccceeeeeeeeEeec
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELG----WAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~----~~~~~DiwslG~~l~~l~  308 (351)
                                     ..+.+||+|||++.....    .....+||+.|+|||++.+.+    ++.++|+|||||++|+|+
T Consensus       203 ---------------~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell  267 (410)
T 3v8s_A          203 ---------------KSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEML  267 (410)
T ss_dssp             ---------------TTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHH
T ss_pred             ---------------CCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHH
Confidence                           245799999999976432    234678999999999998765    789999999999999999


Q ss_pred             cccccccccCCCcee
Q psy2006         309 LGITLMARKTKTKYF  323 (351)
Q Consensus       309 tG~~pf~~~~~~~~~  323 (351)
                      +|..||.+.+..+.+
T Consensus       268 ~G~~Pf~~~~~~~~~  282 (410)
T 3v8s_A          268 VGDTPFYADSLVGTY  282 (410)
T ss_dssp             HSSCTTCCSSHHHHH
T ss_pred             hCCCCCCCCChhhHH
Confidence            999999988766655

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=4.2e-37  Score=284.96  Aligned_cols=196  Identities=21%  Similarity=0.303  Sum_probs=173.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|+++.+++.||+|++.+..    ...+.+.+|+.+++.+.|+|      |++++++|...+++|+||
T Consensus        12 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------Iv~~~~~~~~~~~~~lv~   85 (318)
T 1fot_A           12 RTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPF------IIRMWGTFQDAQQIFMIM   85 (318)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCC------CceEeEEEEeCCEEEEEE
Confidence            67999999999999999999999999997542    23456778999999998887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ |++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.||.+.
T Consensus        86 e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDlkp~NIll~  140 (318)
T 1fot_A           86 DYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLA-----------------------LEYLHSKDIIYRDLKPENILLD  140 (318)
T ss_dssp             CCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECCCCCGGGEEEC
T ss_pred             eCCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCChheEEEc
Confidence            999 889999998764  57888888888888887                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (318)
T 1fot_A          141 --------------------------------------------------------------------------------  140 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                     ..+.+||+|||++..........+||+.|+|||++.+.+++.++|+|||||++|+|++|..||.+
T Consensus       141 ---------------~~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~  205 (318)
T 1fot_A          141 ---------------KNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYD  205 (318)
T ss_dssp             ---------------TTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCC
T ss_pred             ---------------CCCCEEEeecCcceecCCccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCC
Confidence                           23579999999998766666678899999999999999999999999999999999999999988


Q ss_pred             cCCCcee
Q psy2006         317 KTKTKYF  323 (351)
Q Consensus       317 ~~~~~~~  323 (351)
                      .+..+.+
T Consensus       206 ~~~~~~~  212 (318)
T 1fot_A          206 SNTMKTY  212 (318)
T ss_dssp             SSHHHHH
T ss_pred             CCHHHHH
Confidence            7765544

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.6e-37  Score=299.37  Aligned_cols=197  Identities=21%  Similarity=0.279  Sum_probs=168.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|+++.+++.||+|++.+..    .....+.+|+.++..+.|++      |++++++|...+++||||
T Consensus        80 ~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~------Iv~l~~~~~~~~~~~lV~  153 (437)
T 4aw2_A           80 KVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKW------ITTLHYAFQDDNNLYLVM  153 (437)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCC------EEEEEEEEeeCCEEEEEE
Confidence            57999999999999999999999999997532    22234788999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||| ||+|.+++.... ..+++..++.++.|++.|                       |+|||++|++|||+|++||.|.
T Consensus       154 Ey~~gg~L~~~l~~~~-~~l~e~~~~~~~~qi~~a-----------------------L~~LH~~giiHrDLKp~NILl~  209 (437)
T 4aw2_A          154 DYYVGGDLLTLLSKFE-DRLPEEMARFYLAEMVIA-----------------------IDSVHQLHYVHRDIKPDNILMD  209 (437)
T ss_dssp             CCCTTCBHHHHHHTTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC
T ss_pred             ecCCCCcHHHHHHHcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEecccCHHHeeEc
Confidence            999 999999998743 357888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       210 --------------------------------------------------------------------------------  209 (437)
T 4aw2_A          210 --------------------------------------------------------------------------------  209 (437)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeee-----cCCCCCccceeeeeeeeEee
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l~~l  307 (351)
                                     ..+.+||+|||++.....    .....+||+.|+|||++.     ...++.++|+||+||++|+|
T Consensus       210 ---------------~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~el  274 (437)
T 4aw2_A          210 ---------------MNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEM  274 (437)
T ss_dssp             ---------------TTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHH
T ss_pred             ---------------CCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHH
Confidence                           245799999999865322    223468999999999997     45679999999999999999


Q ss_pred             ccccccccccCCCcee
Q psy2006         308 YLGITLMARKTKTKYF  323 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~~  323 (351)
                      ++|..||.+.+..+.+
T Consensus       275 ltG~~Pf~~~~~~~~~  290 (437)
T 4aw2_A          275 LYGETPFYAESLVETY  290 (437)
T ss_dssp             HHSSCTTCCSSHHHHH
T ss_pred             HhCCCCCCCCChhHHH
Confidence            9999999988766655

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=5.8e-37  Score=295.38  Aligned_cols=205  Identities=29%  Similarity=0.555  Sum_probs=181.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      ++||+|+||+||+|.+..+++.||||++.........+.+|+++++.+.+.+..++.||++++++|...+++|+||||++
T Consensus       103 ~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~  182 (429)
T 3kvw_A          103 KVIGKGSFGQVVKAYDHKVHQHVALKMVRNEKRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHICMTFELLS  182 (429)
T ss_dssp             EEEEESSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEEEEEECCCC
T ss_pred             EEcccCccEEEEEEEECCCCcEEEEEEECCccchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeEEEEEeccC
Confidence            67999999999999999999999999998766666778899999999987766667779999999999999999999999


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCc
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      ++|.+++.......+++..++.++.|++.|                       |+|||+++++|||+|+.||.+.+-|  
T Consensus       183 ~~L~~~l~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivHrDlKp~NILl~~~~--  237 (429)
T 3kvw_A          183 MNLYELIKKNKFQGFSLPLVRKFAHSILQC-----------------------LDALHKNRIIHCDLKPENILLKQQG--  237 (429)
T ss_dssp             CBHHHHHHHTTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHHTEECSCCSGGGEEESSTT--
T ss_pred             CCHHHHHHhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHeEEccCC--
Confidence            999999998876678888888888888888                       9999999999999999999886200  


Q ss_pred             ccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhc
Q psy2006         162 TFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (351)
                                                                                                      
T Consensus       238 --------------------------------------------------------------------------------  237 (429)
T 3kvw_A          238 --------------------------------------------------------------------------------  237 (429)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCCCc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                                 ...+||+|||++..........+||+.|+|||++.+..++.++|||||||++|+|++|.+||.+.+..+
T Consensus       238 -----------~~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~  306 (429)
T 3kvw_A          238 -----------RSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGD  306 (429)
T ss_dssp             -----------SCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             -----------CcceEEeecccceecCCcccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHH
Confidence                       124899999999876666677899999999999999999999999999999999999999998877654


Q ss_pred             e
Q psy2006         322 Y  322 (351)
Q Consensus       322 ~  322 (351)
                      .
T Consensus       307 ~  307 (429)
T 3kvw_A          307 Q  307 (429)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=9.2e-37  Score=283.29  Aligned_cols=221  Identities=46%  Similarity=0.828  Sum_probs=182.1

Q ss_pred             ccccCcccceEEEEEE-eecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVV-YEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~-~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||+|+||+||+|.+ ..+++.||+|++.......+.+.+|+++++.+.|++...+.+|++++++|...+++|+||||+
T Consensus        20 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~   99 (339)
T 1z57_A           20 DTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVDRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGHICIVFELL   99 (339)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTEEEEEEECC
T ss_pred             EEEecCCCeEEEEEEecCCCCcEEEEEEEecCCchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCcEEEEEcCC
Confidence            5799999999999998 458899999999876666678889999999999887777777999999999999999999999


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++......++++..++.++.|++.|                       |+|||++|++|||+|+.||.+.+-+.
T Consensus       100 ~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~Dlkp~Nil~~~~~~  156 (339)
T 1z57_A          100 GLSTYDFIKENGFLPFRLDHIRKMAYQICKS-----------------------VNFLHSNKLTHTDLKPENILFVQSDY  156 (339)
T ss_dssp             CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEESCCCE
T ss_pred             CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHH-----------------------HHHHHHCCCcCCCCCHHHEEEecccc
Confidence            9999999998876678888888888888888                       99999999999999999999873221


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                      .........                                                                       
T Consensus       157 ~~~~~~~~~-----------------------------------------------------------------------  165 (339)
T 1z57_A          157 TEAYNPKIK-----------------------------------------------------------------------  165 (339)
T ss_dssp             EEEEC---------------------------------------------------------------------------
T ss_pred             ccccCCccc-----------------------------------------------------------------------
Confidence            100000000                                                                       


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCCC
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKT  320 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~  320 (351)
                           ..........+||+|||++...........||+.|+|||++.+..++.++|+|||||++|++++|..||...+..
T Consensus       166 -----~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~  240 (339)
T 1z57_A          166 -----RDERTLINPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSK  240 (339)
T ss_dssp             -----CEEEEESCCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHH
T ss_pred             -----cccccccCCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChH
Confidence                 000001245799999999987666666778999999999999989999999999999999999999999877654


Q ss_pred             c
Q psy2006         321 K  321 (351)
Q Consensus       321 ~  321 (351)
                      +
T Consensus       241 ~  241 (339)
T 1z57_A          241 E  241 (339)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=1e-36  Score=283.57  Aligned_cols=196  Identities=20%  Similarity=0.285  Sum_probs=170.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||+|+||+||+|.+..+++.||+|++....   ...+.+.+|+++|+.++|+|      |+++++++...+++|+|||
T Consensus        21 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------Iv~l~~~~~~~~~~~lv~e   94 (328)
T 3fe3_A           21 KTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPN------IVKLFEVIETEKTLYLIME   94 (328)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEEEEC
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCC------EeeEEEEEEECCEEEEEEE
Confidence            67999999999999999999999999997532   33456789999999999887      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++...+  .+++..++.++.|++.|                       |+|||++|++|||+|++|+.+. 
T Consensus        95 ~~~~~~L~~~l~~~~--~l~~~~~~~~~~qi~~a-----------------------l~~lH~~~ivHrDlkp~NIll~-  148 (328)
T 3fe3_A           95 YASGGEVFDYLVAHG--RMKEKEARSKFRQIVSA-----------------------VQYCHQKRIVHRDLKAENLLLD-  148 (328)
T ss_dssp             CCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEEC-
T ss_pred             CCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeccCCCHHHEEEc-
Confidence            99 899999998765  57888888888888888                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (328)
T 3fe3_A          149 --------------------------------------------------------------------------------  148 (328)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecCCC-CCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ..+.+||+|||++...  .......+||+.|+|||++.+..+ +.++|+||+||++|+|++|..||
T Consensus       149 --------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf  214 (328)
T 3fe3_A          149 --------------ADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPF  214 (328)
T ss_dssp             --------------TTSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             --------------CCCCEEEeeccCceecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCC
Confidence                          2457999999998653  334456789999999999988877 47899999999999999999999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      .+.+..+..
T Consensus       215 ~~~~~~~~~  223 (328)
T 3fe3_A          215 DGQNLKELR  223 (328)
T ss_dssp             CCSSHHHHH
T ss_pred             CCCCHHHHH
Confidence            887755443

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=9.4e-37  Score=286.69  Aligned_cols=226  Identities=30%  Similarity=0.517  Sum_probs=179.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      ++||+|+||+||+|++..+++.||+|++.......+....|+.+++.+.+.. -+|.||++++++|...+++|+||||++
T Consensus        41 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~e~~~l~~l~~~~-~~h~~iv~~~~~~~~~~~~~lv~e~~~  119 (360)
T 3llt_A           41 RKMGDGTFGRVLLCQHIDNKKYYAVKVVRNIKKYTRSAKIEADILKKIQNDD-INNNNIVKYHGKFMYYDHMCLIFEPLG  119 (360)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECSCHHHHHHHHHHHHHHHHTCCCS-TTGGGBCCEEEEEEETTEEEEEECCCC
T ss_pred             EEEcccCCeEEEEEEECCCCeEEEEEEeccchhhhhhhHHHHHHHHHhcccC-CCCCCeecccceeeECCeeEEEEcCCC
Confidence            6799999999999999999999999999876566677788999999997321 134449999999999999999999999


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCc
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      ++|.+++.......+++..++.++.|++.|                       |+|||++|++|||+|+.||.+.+-+..
T Consensus       120 ~~L~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivHrDlkp~NIll~~~~~~  176 (360)
T 3llt_A          120 PSLYEIITRNNYNGFHIEDIKLYCIEILKA-----------------------LNYLRKMSLTHTDLKPENILLDDPYFE  176 (360)
T ss_dssp             CBHHHHHHHTTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEESCTTCC
T ss_pred             CCHHHHHHhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeCCCCcccEEEcccccc
Confidence            999999998876678888888888888888                       999999999999999999998732111


Q ss_pred             ccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhc
Q psy2006         162 TFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (351)
                      ........             .  .                                                       
T Consensus       177 ~~~~~~~~-------------~--~-------------------------------------------------------  186 (360)
T 3llt_A          177 KSLITVRR-------------V--T-------------------------------------------------------  186 (360)
T ss_dssp             EEEEEEEC-------------T--T-------------------------------------------------------
T ss_pred             ccccchhc-------------c--c-------------------------------------------------------
Confidence            00000000             0  0                                                       


Q ss_pred             cchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCCCc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                      ..............+||+|||++...........||+.|+|||++.+.+++.++|||||||++|+|++|..||.+.+..+
T Consensus       187 ~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~  266 (360)
T 3llt_A          187 DGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHME  266 (360)
T ss_dssp             TCCEEEEEEESCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred             ccccccccccCCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHH
Confidence            00000000012467999999999876666677889999999999999999999999999999999999999998766544

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=1.8e-37  Score=287.71  Aligned_cols=199  Identities=19%  Similarity=0.279  Sum_probs=172.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|.+..+++.||+|++.........+.+|+.+|+.++|+|      |++++++|...+++++||||+ 
T Consensus        11 ~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~E~~~l~~l~hpn------Iv~~~~~~~~~~~~~lv~e~~~   84 (321)
T 1tki_A           11 EDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRN------ILHLHESFESMEELVMIFEFIS   84 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTT------BCCEEEEEEETTEEEEEECCCC
T ss_pred             eEEecCCCeEEEEEEECCCCcEEEEEEEecCcccHHHHHHHHHHHHhCCCCC------CCeEeEEEecCCEEEEEEEeCC
Confidence            6799999999999999999999999999866555667889999999999887      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      |++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.|+.+.+   
T Consensus        85 g~~L~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------l~~lH~~givH~Dlkp~NIl~~~---  137 (321)
T 1tki_A           85 GLDIFERINTSA-FELNEREIVSYVHQVCEA-----------------------LQFLHSHNIGHFDIRPENIIYQT---  137 (321)
T ss_dssp             CCBHHHHHTSSS-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEESS---
T ss_pred             CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCCcCCCCHHHEEEcc---
Confidence            889999997653 357888888888888888                       99999999999999999998761   


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (321)
T 1tki_A          138 --------------------------------------------------------------------------------  137 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccC
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKT  318 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~  318 (351)
                                .....+||+|||++....  .......||+.|+|||++.+..++.++|+||+||++|+|++|..||.+.+
T Consensus       138 ----------~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~  207 (321)
T 1tki_A          138 ----------RRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET  207 (321)
T ss_dssp             ----------SSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             ----------CCCCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCC
Confidence                      013579999999987642  23345678999999999988888999999999999999999999999887


Q ss_pred             CCcee
Q psy2006         319 KTKYF  323 (351)
Q Consensus       319 ~~~~~  323 (351)
                      ..+.+
T Consensus       208 ~~~~~  212 (321)
T 1tki_A          208 NQQII  212 (321)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76654

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=5e-37  Score=281.58  Aligned_cols=195  Identities=21%  Similarity=0.273  Sum_probs=169.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +++||+|+||+||+|.+..+++.||+|++.... ...+.+.+|+.+++.++|+|      |++++++|...+++|+||||
T Consensus        25 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~e~   98 (297)
T 3fxz_A           25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN------IVNYLDSYLVGDELWVVMEY   98 (297)
T ss_dssp             CEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEEEEC
T ss_pred             eeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCC------CCeEeEEEEECCEEEEEEEC
Confidence            468999999999999999999999999997543 33466789999999999887      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++...   .+++..++.++.|++.|                       |.|||++|++|||+|+.|+.+.  
T Consensus        99 ~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~Dlkp~Nil~~--  150 (297)
T 3fxz_A           99 LAGGSLTDVVTET---CMDEGQIAAVCRECLQA-----------------------LEFLHSNQVIHRDIKSDNILLG--  150 (297)
T ss_dssp             CTTCBHHHHHHHS---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC--
T ss_pred             CCCCCHHHHHhhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCceeCCCCHHHEEEC--
Confidence            9 99999999875   47888888888888888                       9999999999999999999886  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (297)
T 3fxz_A          151 --------------------------------------------------------------------------------  150 (297)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   ..+.+||+|||++.....   ......||+.|+|||++.+..++.++|+||+||++|+|++|..||.
T Consensus       151 -------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~  217 (297)
T 3fxz_A          151 -------------MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYL  217 (297)
T ss_dssp             -------------TTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             -------------CCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCC
Confidence                         235699999999865332   2345689999999999999999999999999999999999999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      +.+..+.
T Consensus       218 ~~~~~~~  224 (297)
T 3fxz_A          218 NENPLRA  224 (297)
T ss_dssp             TSCHHHH
T ss_pred             CCCHHHH
Confidence            7765443

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=9.8e-37  Score=294.73  Aligned_cols=208  Identities=20%  Similarity=0.282  Sum_probs=174.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|.++.+++.||+|++...   ....+.+.+|+++|+.++|+|      |++++++|...++.|+|||
T Consensus        17 ~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpn------Iv~l~~~~~~~~~~~lv~E   90 (444)
T 3soa_A           17 EELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPN------IVRLHDSISEEGHHYLIFD   90 (444)
T ss_dssp             EEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTT------BCCEEEEEECSSEEEEEEC
T ss_pred             EEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcC------CCeEEEEEEECCEEEEEEE
Confidence            6799999999999999999999999999753   234566789999999999888      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      || |++|.+.+....  .+++..+..++.|++.|                       |.|||++|++|||+||.||.+.+
T Consensus        91 ~~~gg~L~~~i~~~~--~~~e~~~~~i~~qil~a-----------------------L~~lH~~givHrDlKp~NIll~~  145 (444)
T 3soa_A           91 LVTGGELFEDIVARE--YYSEADASHCIQQILEA-----------------------VLHCHQMGVVHRNLKPENLLLAS  145 (444)
T ss_dssp             CCBCCBHHHHHHHCS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCSSTTEEESB
T ss_pred             eCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCCHHHEEEec
Confidence            99 899999998865  57888888888888888                       99999999999999999998862


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                      -                                                                               
T Consensus       146 ~-------------------------------------------------------------------------------  146 (444)
T 3soa_A          146 K-------------------------------------------------------------------------------  146 (444)
T ss_dssp             S-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                   .....+||+|||++.....   ......||+.|+|||++.+.+++.++||||+||++|+|++|.+||
T Consensus       147 -------------~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf  213 (444)
T 3soa_A          147 -------------LKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPF  213 (444)
T ss_dssp             -------------STTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             -------------CCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCC
Confidence                         0135699999999976432   224578999999999998889999999999999999999999999


Q ss_pred             cccCCCceee---ecccCCcc
Q psy2006         315 ARKTKTKYFY---HGKLDWDE  332 (351)
Q Consensus       315 ~~~~~~~~~~---~~~~~~~~  332 (351)
                      .+.+..+.+.   .+...++.
T Consensus       214 ~~~~~~~~~~~i~~~~~~~~~  234 (444)
T 3soa_A          214 WDEDQHRLYQQIKAGAYDFPS  234 (444)
T ss_dssp             CCSSHHHHHHHHHHTCCCCCT
T ss_pred             CCccHHHHHHHHHhCCCCCCc
Confidence            9887766653   34444443

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=8.5e-37  Score=286.60  Aligned_cols=196  Identities=21%  Similarity=0.283  Sum_probs=173.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|+++.+++.||+|++.+..    ...+.+.+|+++|+.+.|++      |++++++|...+++|+||
T Consensus        47 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~  120 (350)
T 1rdq_E           47 KTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPF------LVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCC------CCeEEEEEEcCCEEEEEE
Confidence            67999999999999999999999999997542    23456788999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ |++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.||.+.
T Consensus       121 e~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDlkp~NIll~  175 (350)
T 1rdq_E          121 EYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLT-----------------------FEYLHSLDLIYRDLKPENLLID  175 (350)
T ss_dssp             ECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC
T ss_pred             cCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccccCccceEEEC
Confidence            999 899999998865  57888888888888887                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (350)
T 1rdq_E          176 --------------------------------------------------------------------------------  175 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                     ..+.+||+|||++..........+||+.|+|||++.+..++.++|+|||||++|+|++|..||.+
T Consensus       176 ---------------~~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~  240 (350)
T 1rdq_E          176 ---------------QQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFA  240 (350)
T ss_dssp             ---------------TTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred             ---------------CCCCEEEcccccceeccCCcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCC
Confidence                           23579999999998766556678899999999999999999999999999999999999999998


Q ss_pred             cCCCcee
Q psy2006         317 KTKTKYF  323 (351)
Q Consensus       317 ~~~~~~~  323 (351)
                      .+..+.+
T Consensus       241 ~~~~~~~  247 (350)
T 1rdq_E          241 DQPIQIY  247 (350)
T ss_dssp             SSHHHHH
T ss_pred             CCHHHHH
Confidence            7766554

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=1.1e-36  Score=285.17  Aligned_cols=196  Identities=19%  Similarity=0.314  Sum_probs=169.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|+++.+++.||||++.+..    ...+....|..+++.+ .|++      |++++++|...+++|+|
T Consensus        23 ~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~------iv~l~~~~~~~~~~~lv   96 (345)
T 1xjd_A           23 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPF------LTHMFCTFQTKENLFFV   96 (345)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTT------BCCEEEEEECSSEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCC------CCcEEEEEEeCCEEEEE
Confidence            57999999999999999999999999997642    2345677899999987 6766      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ |++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.||.+
T Consensus        97 ~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDlkp~NIll  151 (345)
T 1xjd_A           97 MEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILG-----------------------LQFLHSKGIVYRDLKLDNILL  151 (345)
T ss_dssp             EECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCCGGGEEE
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeCCCChhhEEE
Confidence            9999 899999998764  57788888888888777                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       152 ~-------------------------------------------------------------------------------  152 (345)
T 1xjd_A          152 D-------------------------------------------------------------------------------  152 (345)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   .......+||+.|+|||++.+..++.++|+||+||++|+|++|..
T Consensus       153 ----------------~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~  216 (345)
T 1xjd_A          153 ----------------KDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQS  216 (345)
T ss_dssp             ----------------TTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------CCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCC
Confidence                            2357999999998752   223456789999999999999999999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       217 Pf~~~~~~~~~  227 (345)
T 1xjd_A          217 PFHGQDEEELF  227 (345)
T ss_dssp             SSCCSSHHHHH
T ss_pred             CCCCCCHHHHH
Confidence            99987766554

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.1e-36  Score=284.16  Aligned_cols=197  Identities=22%  Similarity=0.334  Sum_probs=171.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|.+..+++.||+|++....    .....+.+|+.+|+.++|+|      |+++++++...+++++||
T Consensus        15 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------Iv~l~~~~~~~~~~~lv~   88 (336)
T 3h4j_B           15 ETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPH------IIKLYDVITTPTDIVMVI   88 (336)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCC------CCeEEEEEEeCCEEEEEE
Confidence            67999999999999999999999999997532    22356889999999999887      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||++|+|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|++||.+. 
T Consensus        89 E~~~g~l~~~l~~~~--~l~~~~~~~i~~qi~~a-----------------------L~~LH~~givH~Dlkp~NIll~-  142 (336)
T 3h4j_B           89 EYAGGELFDYIVEKK--RMTEDEGRRFFQQIICA-----------------------IEYCHRHKIVHRDLKPENLLLD-  142 (336)
T ss_dssp             CCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHHTCCCCCCSTTTEEEC-
T ss_pred             ECCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEecCCchhhEEEc-
Confidence            999999999998765  57888888888888888                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (336)
T 3h4j_B          143 --------------------------------------------------------------------------------  142 (336)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCC-CCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ....+||+|||++....  ......+||+.|+|||++.+..+ +.++|+||+||++|+|++|..||
T Consensus       143 --------------~~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf  208 (336)
T 3h4j_B          143 --------------DNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPF  208 (336)
T ss_dssp             --------------TTCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             --------------CCCCEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCC
Confidence                          23579999999987532  23456789999999999988776 78899999999999999999999


Q ss_pred             cccCCCceee
Q psy2006         315 ARKTKTKYFY  324 (351)
Q Consensus       315 ~~~~~~~~~~  324 (351)
                      .+.+..+.+.
T Consensus       209 ~~~~~~~~~~  218 (336)
T 3h4j_B          209 DDEFIPNLFK  218 (336)
T ss_dssp             BCSSSTTCBC
T ss_pred             CCccHHHHHH
Confidence            9877666553

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.6e-36  Score=288.86  Aligned_cols=190  Identities=17%  Similarity=0.274  Sum_probs=165.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|+++.+++.||+|++++..    ...+.+.+|..+|+.+ +|++      |++++++|...+++|+|
T Consensus        58 ~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~------Iv~l~~~~~~~~~~~lV  131 (396)
T 4dc2_A           58 RVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPF------LVGLHSCFQTESRLFFV  131 (396)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTT------BCCEEEEEECSSEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCC------cCeeEEEEEECCEEEEE
Confidence            67999999999999999999999999997642    2234577899999887 6666      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ |++|.+++....  .+++..++.++.|++.|                       |+|||++||+|||+|+.||.+
T Consensus       132 ~E~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~a-----------------------L~~LH~~givHrDLKp~NILl  186 (396)
T 4dc2_A          132 IEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLA-----------------------LNYLHERGIIYRDLKLDNVLL  186 (396)
T ss_dssp             EECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCCGGGEEE
T ss_pred             EEcCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEeccCCHHHEEE
Confidence            9999 889999998865  57888888888888887                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       187 ~-------------------------------------------------------------------------------  187 (396)
T 4dc2_A          187 D-------------------------------------------------------------------------------  187 (396)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcce---eccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~---~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++..   ........+||+.|+|||++.+.+++.++|+|||||++|+|++|..
T Consensus       188 ----------------~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~  251 (396)
T 4dc2_A          188 ----------------SEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS  251 (396)
T ss_dssp             ----------------TTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------CCCCEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCC
Confidence                            245799999999875   2334456789999999999999999999999999999999999999


Q ss_pred             ccccc
Q psy2006         313 LMARK  317 (351)
Q Consensus       313 pf~~~  317 (351)
                      ||...
T Consensus       252 Pf~~~  256 (396)
T 4dc2_A          252 PFDIV  256 (396)
T ss_dssp             SSTTT
T ss_pred             CCccc
Confidence            99754

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=1.9e-36  Score=287.49  Aligned_cols=250  Identities=27%  Similarity=0.434  Sum_probs=181.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCC--CCcceeeeeeeEe----eCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPN--GRHLCVKMLDWFD----YHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~--g~~~Iv~l~~~f~----~~~~~~l   75 (351)
                      ++||+|+||+||+|++..+++.||+|++.......+.+.+|+++|+.+.|.+++  ++.||++++++|.    ...++|+
T Consensus        43 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~l  122 (397)
T 1wak_A           43 RKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICM  122 (397)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEE
T ss_pred             EEeeecCCeeEEEEEecCCCeEEEEEEEecCCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEE
Confidence            579999999999999999999999999987666677888999999999876543  5777999999998    4459999


Q ss_pred             EEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCeE
Q psy2006          76 AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni~  154 (351)
                      ||||++++|.+.+.......+++..++.++.|++.|                       |.|||++ |++|||+|+.||.
T Consensus       123 v~e~~~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~~lH~~~givHrDikp~NIl  179 (397)
T 1wak_A          123 VFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQG-----------------------LDYLHTKCRIIHTDIKPENIL  179 (397)
T ss_dssp             EECCCCCBHHHHHHHTTTSCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCEECCCCSGGGEE
T ss_pred             EEeccCccHHHHHHhcccCCCCHHHHHHHHHHHHHH-----------------------HHHHHHhCCEecCCCCHHHee
Confidence            999999999999887765678888888888888888                       9999998 9999999999999


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCC--CChhhhhcCCCCCCCCchhhhcc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSER--ISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R--~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +..-|..                                ...+......+.....  ++....-..+....         
T Consensus       180 l~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  218 (397)
T 1wak_A          180 LSVNEQY--------------------------------IRRLAAEATEWQRSGAPPPSGSAVSTAPATAG---------  218 (397)
T ss_dssp             ECCCHHH--------------------------------HHHHHHHHC---------------------CC---------
T ss_pred             Eeccchh--------------------------------hhhhhhhhHHHhhcCCCCCCCCccccCCcccc---------
Confidence            8732100                                0000000000000000  00000000000000         


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                       ..      ..............+||+|||++...........||+.|+|||++.+..++.++|||||||++|+|+||..
T Consensus       219 -~~------~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~  291 (397)
T 1wak_A          219 -NF------LVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDY  291 (397)
T ss_dssp             -TT------SCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             -cc------cccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCC
Confidence             00      00000001113457999999999876666667789999999999999999999999999999999999999


Q ss_pred             cccccCCCce
Q psy2006         313 LMARKTKTKY  322 (351)
Q Consensus       313 pf~~~~~~~~  322 (351)
                      ||.+.+..++
T Consensus       292 pf~~~~~~~~  301 (397)
T 1wak_A          292 LFEPHSGEEY  301 (397)
T ss_dssp             SCCCCCCSSS
T ss_pred             CCCCCccccc
Confidence            9988776543

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=1.4e-36  Score=286.39  Aligned_cols=199  Identities=20%  Similarity=0.298  Sum_probs=170.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||+|+||+||+|.++.+++.||+|++...   ....+.+.+|+.+++.+.|+|      |++++++|...++.|+|||
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpn------Iv~~~~~~~~~~~~~lv~e  108 (362)
T 2bdw_A           35 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPN------IVRLHDSIQEESFHYLVFD  108 (362)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEEEEC
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCC------CCeEEEEEEeCCEEEEEEe
Confidence            5799999999999999999999999999753   233466789999999999887      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++....  .+++..+..++.|++.|                       |.|||++|++|||+|+.||.+.+
T Consensus       109 ~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~ivH~Dlkp~NIll~~  163 (362)
T 2bdw_A          109 LVTGGELFEDIVARE--FYSEADASHCIQQILES-----------------------IAYCHSNGIVHRNLKPENLLLAS  163 (362)
T ss_dssp             CCCSCBHHHHHTTCS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCSGGGEEESC
T ss_pred             cCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeccCchHHEEEec
Confidence            99 889999987654  57788888888888887                       99999999999999999998862


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                      -+                                                                              
T Consensus       164 ~~------------------------------------------------------------------------------  165 (362)
T 2bdw_A          164 KA------------------------------------------------------------------------------  165 (362)
T ss_dssp             SS------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                    ....+||+|||++.....  ......||+.|+|||++.+..++.++|+|||||++|+|++|..||.
T Consensus       166 --------------~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~  231 (362)
T 2bdw_A          166 --------------KGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFW  231 (362)
T ss_dssp             --------------TTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             --------------CCCCEEEeecCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                          124699999999876432  2345689999999999988899999999999999999999999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+.+
T Consensus       232 ~~~~~~~~  239 (362)
T 2bdw_A          232 DEDQHRLY  239 (362)
T ss_dssp             CSSHHHHH
T ss_pred             CCCHHHHH
Confidence            87766554

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=3.9e-36  Score=281.01  Aligned_cols=220  Identities=54%  Similarity=0.897  Sum_probs=180.3

Q ss_pred             ccccCcccceEEEEEEeecC-cEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVD-SVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~-~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+||+||+|.+..++ +.||+|++.......+.+.+|+.+++.+.|.+...+.+|+.++++|...+++|+||||+
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~  104 (355)
T 2eu9_A           25 GNLGEGTFGKVVECLDHARGKSQVALKIIRNVGKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGHMCIAFELL  104 (355)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTEEEEEEECC
T ss_pred             EEeeccCCeEEEEEEecCCCceEEEEEEEcccccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCeEEEEEecc
Confidence            57999999999999998776 79999999876666677889999999999877666666999999999999999999999


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.......+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.+-+.
T Consensus       105 ~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~-----------------------L~~lH~~~ivH~Dlkp~NIll~~~~~  161 (355)
T 2eu9_A          105 GKNTFEFLKENNFQPYPLPHVRHMAYQLCHA-----------------------LRFLHENQLTHTDLKPENILFVNSEF  161 (355)
T ss_dssp             CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECCCCCGGGEEESCCCE
T ss_pred             CCChHHHHHhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHEEEecccc
Confidence            9999999988765678888888888888888                       99999999999999999999853111


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                      .........                                                                       
T Consensus       162 ~~~~~~~~~-----------------------------------------------------------------------  170 (355)
T 2eu9_A          162 ETLYNEHKS-----------------------------------------------------------------------  170 (355)
T ss_dssp             EEEECCC-C-----------------------------------------------------------------------
T ss_pred             ccccccccc-----------------------------------------------------------------------
Confidence            000000000                                                                       


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCCC
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKT  320 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~  320 (351)
                           ..........+||+|||++...........||+.|+|||++.+..++.++|+|||||++|+|++|..||.+.+..
T Consensus       171 -----~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~  245 (355)
T 2eu9_A          171 -----CEEKSVKNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENR  245 (355)
T ss_dssp             -----CCEEEESCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHH
T ss_pred             -----ccccccCCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHH
Confidence                 000001356799999999987666666778999999999999989999999999999999999999999876644

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=1.8e-36  Score=284.68  Aligned_cols=196  Identities=17%  Similarity=0.241  Sum_probs=169.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|+++.+++.||||++.+..    ...+.+..|.++|..+ .|++      |++++++|...+++|+|
T Consensus        26 ~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~------iv~l~~~~~~~~~~~lv   99 (353)
T 2i0e_A           26 MVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPF------LTQLHSCFQTMDRLYFV   99 (353)
T ss_dssp             EEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTT------BCCEEEEEECSSEEEEE
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCE------EeeEEEEEEcCCEEEEE
Confidence            57999999999999998899999999997642    2345677899999887 4555      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ |++|.+++...+  .+++..++.++.|++.|                       |+|||++|++|||+|+.||.+
T Consensus       100 ~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~givHrDlkp~NIll  154 (353)
T 2i0e_A          100 MEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIG-----------------------LFFLQSKGIIYRDLKLDNVML  154 (353)
T ss_dssp             EECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCCGGGEEE
T ss_pred             EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEeccCCHHHEEE
Confidence            9999 899999998765  57888888888888887                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       155 ~-------------------------------------------------------------------------------  155 (353)
T 2i0e_A          155 D-------------------------------------------------------------------------------  155 (353)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   .......+||+.|+|||++.+.+++.++|+|||||++|+|++|..
T Consensus       156 ----------------~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~  219 (353)
T 2i0e_A          156 ----------------SEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQA  219 (353)
T ss_dssp             ----------------TTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------CCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCC
Confidence                            2357999999998752   223456789999999999999999999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+++
T Consensus       220 Pf~~~~~~~~~  230 (353)
T 2i0e_A          220 PFEGEDEDELF  230 (353)
T ss_dssp             SSCCSSHHHHH
T ss_pred             CCCCCCHHHHH
Confidence            99988766654

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=6.7e-36  Score=283.61  Aligned_cols=192  Identities=20%  Similarity=0.305  Sum_probs=166.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|.+..+++.||+|++.+..    ...+.+.+|+++|+.+.|+|      |++++++|...+++|+||
T Consensus        21 ~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~------Iv~l~~~~~~~~~~~lv~   94 (384)
T 4fr4_A           21 RAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPF------LVNLWYSFQDEEDMFMVV   94 (384)
T ss_dssp             EEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCC------CCcEEEEEEeCCEEEEEE
Confidence            67999999999999999999999999997532    23456789999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ |++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.
T Consensus        95 e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~a-----------------------L~~LH~~givHrDlkp~NIll~  149 (384)
T 4fr4_A           95 DLLLGGDLRYHLQQNV--HFKEETVKLFICELVMA-----------------------LDYLQNQRIIHRDMKPDNILLD  149 (384)
T ss_dssp             CCCTTEEHHHHHHTTC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC
T ss_pred             ecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceeccCcHHHeEEC
Confidence            999 999999998754  57888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (384)
T 4fr4_A          150 --------------------------------------------------------------------------------  149 (384)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeec---CCCCCccceeeeeeeeEeecccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                     ..+.+||+|||++....  ......+||+.|+|||++.+   .+++.++|+|||||++|+|++|.
T Consensus       150 ---------------~~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~  214 (384)
T 4fr4_A          150 ---------------EHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGR  214 (384)
T ss_dssp             ---------------TTSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSS
T ss_pred             ---------------CCCCEEEeccceeeeccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCC
Confidence                           24579999999997632  33456789999999999874   45899999999999999999999


Q ss_pred             ccccccCC
Q psy2006         312 TLMARKTK  319 (351)
Q Consensus       312 ~pf~~~~~  319 (351)
                      .||...+.
T Consensus       215 ~Pf~~~~~  222 (384)
T 4fr4_A          215 RPYHIRSS  222 (384)
T ss_dssp             CSSCCCTT
T ss_pred             CCCCCCCC
Confidence            99986543

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=289.05  Aligned_cols=197  Identities=20%  Similarity=0.271  Sum_probs=169.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|+++.+++.||||++.+..    ...+.+.+|+.+|..+.|++      |++++++|...+++||||
T Consensus        67 ~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~------Iv~l~~~~~~~~~~~lVm  140 (412)
T 2vd5_A           67 KVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRW------ITQLHFAFQDENYLYLVM  140 (412)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCC------eeeEEEEEeeCCEEEEEE
Confidence            57999999999999999999999999997532    22345788999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ |++|.+++.+.+ ..+++..++.++.|++.|                       |+|||++|++|||+|+.||.+.
T Consensus       141 E~~~gg~L~~~l~~~~-~~l~~~~~~~~~~qi~~a-----------------------L~~LH~~giiHrDLKp~NILld  196 (412)
T 2vd5_A          141 EYYVGGDLLTLLSKFG-ERIPAEMARFYLAEIVMA-----------------------IDSVHRLGYVHRDIKPDNILLD  196 (412)
T ss_dssp             CCCCSCBHHHHHHHHS-SCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC
T ss_pred             cCCCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecccCHHHeeec
Confidence            999 999999998764 257888888888888887                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       197 --------------------------------------------------------------------------------  196 (412)
T 2vd5_A          197 --------------------------------------------------------------------------------  196 (412)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeec-------CCCCCccceeeeeeeeE
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILE-------LGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~-------~~~~~~~DiwslG~~l~  305 (351)
                                     ..+.+||+|||++......    ....+||+.|+|||++..       ..++.++|+|||||++|
T Consensus       197 ---------------~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvily  261 (412)
T 2vd5_A          197 ---------------RCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAY  261 (412)
T ss_dssp             ---------------TTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHH
T ss_pred             ---------------CCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHH
Confidence                           2457999999998764321    234689999999999973       46789999999999999


Q ss_pred             eeccccccccccCCCcee
Q psy2006         306 ELYLGITLMARKTKTKYF  323 (351)
Q Consensus       306 ~l~tG~~pf~~~~~~~~~  323 (351)
                      +|++|..||.+.+..+.+
T Consensus       262 elltG~~Pf~~~~~~~~~  279 (412)
T 2vd5_A          262 EMFYGQTPFYADSTAETY  279 (412)
T ss_dssp             HHHHSSCTTCCSSHHHHH
T ss_pred             HHHhCCCCCCCCCHHHHH
Confidence            999999999988766654

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=3.8e-36  Score=279.30  Aligned_cols=193  Identities=24%  Similarity=0.370  Sum_probs=148.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||+|+||+||+|.+..+++.||+|++...  ......+|+.+++.+. |+|      |++++++|...++.|+||||+
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~e~~~l~~l~~h~n------iv~~~~~~~~~~~~~lv~e~~   88 (325)
T 3kn6_A           17 KPLGEGSFSICRKCVHKKSNQAFAVKIISKR--MEANTQKEITALKLCEGHPN------IVKLHEVFHDQLHTFLVMELL   88 (325)
T ss_dssp             CCSEEETTEEEEEEEETTTCCEEEEEEEEGG--GHHHHHHHHHHHHHTTTCTT------BCCEEEEEECSSEEEEEECCC
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEChh--hhhhHHHHHHHHHHhcCCCC------eeEEEEEEEcCCEEEEEEEcc
Confidence            5799999999999999999999999999753  3456778999999997 666      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++....  .+++..++.++.|++.+                       |+|||++|++|||+|+.||.+.+-|
T Consensus        89 ~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~ivH~Dlkp~NIll~~~~  143 (325)
T 3kn6_A           89 NGGELFERIKKKK--HFSETEASYIMRKLVSA-----------------------VSHMHDVGVVHRDLKPENLLFTDEN  143 (325)
T ss_dssp             CSCBHHHHHHHCS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEEEC--
T ss_pred             CCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCeecCCCHHHEEEecCC
Confidence             889999998864  67888888888888888                       9999999999999999999987200


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (325)
T 3kn6_A          144 --------------------------------------------------------------------------------  143 (325)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                  ....+||+|||++....   ......+||+.|+|||++.+..++.++|+||+||++|+|++|..||.+
T Consensus       144 ------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~  211 (325)
T 3kn6_A          144 ------------DNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQS  211 (325)
T ss_dssp             --------------CEEEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-
T ss_pred             ------------CcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCC
Confidence                        12368999999987532   233456789999999999999999999999999999999999999987


Q ss_pred             cCC
Q psy2006         317 KTK  319 (351)
Q Consensus       317 ~~~  319 (351)
                      .+.
T Consensus       212 ~~~  214 (325)
T 3kn6_A          212 HDR  214 (325)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            654

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=8.1e-36  Score=279.38  Aligned_cols=189  Identities=17%  Similarity=0.280  Sum_probs=165.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|+++.+++.||+|++.+..    ...+.+.+|+.+++.+ .|++      |++++++|...+++|+|
T Consensus        15 ~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~------iv~l~~~~~~~~~~~lv   88 (345)
T 3a8x_A           15 RVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPF------LVGLHSCFQTESRLFFV   88 (345)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTT------BCCEEEEEECSSEEEEE
T ss_pred             EEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCc------cCeEEEEEEeCCEEEEE
Confidence            67999999999999999999999999997542    3345678899999987 6666      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ |++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|+.||.+
T Consensus        89 ~e~~~gg~L~~~l~~~~--~l~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDlkp~NIll  143 (345)
T 3a8x_A           89 IEYVNGGDLMFHMQRQR--KLPEEHARFYSAEISLA-----------------------LNYLHERGIIYRDLKLDNVLL  143 (345)
T ss_dssp             ECCCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCCGGGEEE
T ss_pred             EeCCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceecCCCHHHEEE
Confidence            9999 899999998764  57888888888888877                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       144 ~-------------------------------------------------------------------------------  144 (345)
T 3a8x_A          144 D-------------------------------------------------------------------------------  144 (345)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   .......+||+.|+|||++.+..++.++|+|||||++|+|++|..
T Consensus       145 ----------------~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~  208 (345)
T 3a8x_A          145 ----------------SEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRS  208 (345)
T ss_dssp             ----------------TTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------CCCCEEEEeccccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCC
Confidence                            2357999999998752   233456789999999999999999999999999999999999999


Q ss_pred             cccc
Q psy2006         313 LMAR  316 (351)
Q Consensus       313 pf~~  316 (351)
                      ||..
T Consensus       209 pf~~  212 (345)
T 3a8x_A          209 PFDI  212 (345)
T ss_dssp             TTTT
T ss_pred             CcCC
Confidence            9975

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=5.7e-36  Score=285.90  Aligned_cols=195  Identities=20%  Similarity=0.276  Sum_probs=158.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEee----CCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDY----HGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~----~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+++.||||++..    .....+|+.++.++ .|+|      |++++++|..    .+++|||
T Consensus        68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~----~~~~~~E~~~~~~~~~hp~------iv~l~~~~~~~~~~~~~~~lv  137 (400)
T 1nxk_A           68 QVLGLGINGKVLQIFNKRTQEKFALKMLQD----CPKARREVELHWRASQCPH------IVRIVDVYENLYAGRKCLLIV  137 (400)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC----SHHHHHHHHHHHHHTTSTT------BCCEEEEEEEEETTEEEEEEE
T ss_pred             ceeeeccCeEEEEEEECCCCCEEEEEEeCc----chhHHHHHHHHHHhcCCCC------cceEeEEEeecccCCcEEEEE
Confidence            469999999999999999999999999975    24567788888554 5566      9999999986    5689999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||| |++|.+++.......+++..++.++.|++.|                       |+|||+.|++|||+|++||.+
T Consensus       138 ~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivHrDlkp~Nill  194 (400)
T 1nxk_A          138 MECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEA-----------------------IQYLHSINIAHRDVKPENLLY  194 (400)
T ss_dssp             EECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEE
T ss_pred             EEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCcCcceEEE
Confidence            9999 8899999988655568888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+-+                                                                            
T Consensus       195 ~~~~----------------------------------------------------------------------------  198 (400)
T 1nxk_A          195 TSKR----------------------------------------------------------------------------  198 (400)
T ss_dssp             SSSS----------------------------------------------------------------------------
T ss_pred             ecCC----------------------------------------------------------------------------
Confidence            6200                                                                            


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                      ....+||+|||++....  ......+||+.|+|||++.+..++.++|||||||++|+|++|..|
T Consensus       199 ----------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~p  262 (400)
T 1nxk_A          199 ----------------PNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPP  262 (400)
T ss_dssp             ----------------TTCCEEECCCTTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCS
T ss_pred             ----------------CCccEEEEecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCC
Confidence                            13579999999987633  233567889999999999888999999999999999999999999


Q ss_pred             ccccCCCc
Q psy2006         314 MARKTKTK  321 (351)
Q Consensus       314 f~~~~~~~  321 (351)
                      |.+.+...
T Consensus       263 f~~~~~~~  270 (400)
T 1nxk_A          263 FYSNHGLA  270 (400)
T ss_dssp             CCCCTTCS
T ss_pred             CCCCcccc
Confidence            98876554

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=2.8e-36  Score=283.12  Aligned_cols=196  Identities=22%  Similarity=0.279  Sum_probs=166.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +.||+|+||+||+|.++.+++.||||++....      ...+.+.+|+.+++.++|+|      |++++++|..++++|+
T Consensus        30 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------Iv~~~~~~~~~~~~~l  103 (351)
T 3c0i_A           30 EVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPH------IVELLETYSSDGMLYM  103 (351)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTT------BCCEEEEEEETTEEEE
T ss_pred             eEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCC------CCcEEEEEEeCCEEEE
Confidence            57999999999999999999999999996532      13467889999999999887      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          76 AFEIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ||||| |++|.+.+...  ....+++..++.++.|++.|                       |+|||++|++|||+|+.|
T Consensus       104 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~ivHrDlkp~N  160 (351)
T 3c0i_A          104 VFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEA-----------------------LRYCHDNNIIHRDVKPHC  160 (351)
T ss_dssp             EEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGG
T ss_pred             EEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceeccCChHH
Confidence            99999 89999888654  22346777788888888777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.+-|                                                                         
T Consensus       161 Il~~~~~-------------------------------------------------------------------------  167 (351)
T 3c0i_A          161 VLLASKE-------------------------------------------------------------------------  167 (351)
T ss_dssp             EEECSSS-------------------------------------------------------------------------
T ss_pred             eEEecCC-------------------------------------------------------------------------
Confidence            9886210                                                                         


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                         ....+||+|||++......   ....+||+.|+|||++.+..++.++|+||+||++|+|++
T Consensus       168 -------------------~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~  228 (351)
T 3c0i_A          168 -------------------NSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLS  228 (351)
T ss_dssp             -------------------TTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHH
T ss_pred             -------------------CCCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHH
Confidence                               1245899999998764322   345689999999999998899999999999999999999


Q ss_pred             ccccccccC
Q psy2006         310 GITLMARKT  318 (351)
Q Consensus       310 G~~pf~~~~  318 (351)
                      |..||.+.+
T Consensus       229 g~~pf~~~~  237 (351)
T 3c0i_A          229 GCLPFYGTK  237 (351)
T ss_dssp             SSCSSCSSH
T ss_pred             CCCCCCCcH
Confidence            999998754

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=280.55  Aligned_cols=200  Identities=23%  Similarity=0.318  Sum_probs=171.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh-------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK-------YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~-------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|.+..+++.||+|++.....       ..+.+.+|+.+|+.+.|+|      |++++++|...++++
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~   90 (326)
T 2y0a_A           17 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPN------VITLHEVYENKTDVI   90 (326)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEE
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCC------CCcEEEEEEeCCEEE
Confidence            579999999999999999999999999975321       3467889999999999877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++....  .+++..+..++.|++.|                       |.|||++|++|||+|+.||
T Consensus        91 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~ivH~Dlkp~NI  145 (326)
T 2y0a_A           91 LILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNG-----------------------VYYLHSLQIAHFDLKPENI  145 (326)
T ss_dssp             EEEECCCSCBHHHHHTTSS--CCBHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGE
T ss_pred             EEEEcCCCCCHHHHHHhcC--CcCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEcCCCCHHHE
Confidence            999999 899999997654  57888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+-|.                                                                         
T Consensus       146 ll~~~~~-------------------------------------------------------------------------  152 (326)
T 2y0a_A          146 MLLDRNV-------------------------------------------------------------------------  152 (326)
T ss_dssp             EESCSSS-------------------------------------------------------------------------
T ss_pred             EEecCCC-------------------------------------------------------------------------
Confidence            8863110                                                                         


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                        ....+||+|||++....  .......||+.|+|||++.+..++.++|+|||||++|+|++|.
T Consensus       153 ------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~  214 (326)
T 2y0a_A          153 ------------------PKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGA  214 (326)
T ss_dssp             ------------------SSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSC
T ss_pred             ------------------CCCCEEEEECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCc
Confidence                              12368999999987643  3345578999999999998889999999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      .||.+.+..+.+
T Consensus       215 ~pf~~~~~~~~~  226 (326)
T 2y0a_A          215 SPFLGDTKQETL  226 (326)
T ss_dssp             CSSCCSSHHHHH
T ss_pred             CCCCCCCHHHHH
Confidence            999887766554

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=272.95  Aligned_cols=198  Identities=21%  Similarity=0.348  Sum_probs=169.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh------hhhHHHHHHHHHHHHhC---CCCCCCCcceeeeeeeEeeCC-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE------KYREAARLEINALQKIG---EKDPNGRHLCVKMLDWFDYHG-   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~------~~~~~~~~E~~~l~~l~---h~~~~g~~~Iv~l~~~f~~~~-   71 (351)
                      ++||+|+||+||+|++..+++.||+|++....      .......+|+++++.+.   |+|      |+++++++.... 
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~n------iv~~~~~~~~~~~   88 (308)
T 3g33_A           15 AEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPN------VVRLMDVCATSRT   88 (308)
T ss_dssp             EEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTT------BCCEEEEEEECCS
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCC------eEEeeeeeeccCC
Confidence            67999999999999999999999999997422      12346678888888776   666      999999998766 


Q ss_pred             ----eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccc
Q psy2006          72 ----HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRR  147 (351)
Q Consensus        72 ----~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d  147 (351)
                          ++++||||++++|.+++.......+++..++.++.|++.|                       |+|||++|++|||
T Consensus        89 ~~~~~~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~ivH~D  145 (308)
T 3g33_A           89 DREIKVTLVFEHVDQDLRTYLDKAPPPGLPAETIKDLMRQFLRG-----------------------LDFLHANCIVHRD  145 (308)
T ss_dssp             SSEEEEEEEEECCCCBHHHHHHTCCTTCSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSC
T ss_pred             CCceeEEEEehhhhcCHHHHHhhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCC
Confidence                6999999998899999998765568888888888888888                       9999999999999


Q ss_pred             cCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         148 VRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       148 ~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +|+.||.+.                                                                       
T Consensus       146 lkp~Nil~~-----------------------------------------------------------------------  154 (308)
T 3g33_A          146 LKPENILVT-----------------------------------------------------------------------  154 (308)
T ss_dssp             CCTTTEEEC-----------------------------------------------------------------------
T ss_pred             CCHHHEEEc-----------------------------------------------------------------------
Confidence            999999886                                                                       


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeE
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~  305 (351)
                                              ....+||+|||++....  .......||+.|+|||++.+..++.++|+|||||++|
T Consensus       155 ------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~  210 (308)
T 3g33_A          155 ------------------------SGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFA  210 (308)
T ss_dssp             ------------------------TTSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHH
T ss_pred             ------------------------CCCCEEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHH
Confidence                                    23569999999987533  2335578899999999999999999999999999999


Q ss_pred             eeccccccccccCCCcee
Q psy2006         306 ELYLGITLMARKTKTKYF  323 (351)
Q Consensus       306 ~l~tG~~pf~~~~~~~~~  323 (351)
                      +|++|.+||.+.+..+.+
T Consensus       211 ~l~~g~~pf~~~~~~~~~  228 (308)
T 3g33_A          211 EMFRRKPLFCGNSEADQL  228 (308)
T ss_dssp             HTTTSSCSCCCSSHHHHH
T ss_pred             HHHhCCCCCCCCCHHHHH
Confidence            999999999887766544

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=8e-36  Score=281.09  Aligned_cols=197  Identities=19%  Similarity=0.242  Sum_probs=159.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|++..+++.||+|++.......+.+.+|+.+++.++|+|      |++++++|...+++|+||||+ 
T Consensus        26 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~lv~e~~~   99 (361)
T 3uc3_A           26 KDIGSGNFGVARLMRDKLTKELVAVKYIERGAAIDENVQREIINHRSLRHPN------IVRFKEVILTPTHLAIIMEYAS   99 (361)
T ss_dssp             EEESSSTTSSEEEEEETTTCCEEEEEEEESSTTSCHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEEEEECCC
T ss_pred             EEeccCCCEEEEEEEECCCCcEEEEEEEecCccccHHHHHHHHHHHhCCCCC------CCcEEEEEeeCCEEEEEEEeCC
Confidence            6799999999999999999999999999876555677889999999999887      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++...+  .+++..++.++.|++.|                       |.|||++|++|||+|+.|+.+.+-  
T Consensus       100 ~~~L~~~l~~~~--~~~~~~~~~i~~ql~~~-----------------------L~~LH~~~ivH~Dlkp~Nill~~~--  152 (361)
T 3uc3_A          100 GGELYERICNAG--RFSEDEARFFFQQLLSG-----------------------VSYCHSMQICHRDLKLENTLLDGS--  152 (361)
T ss_dssp             SCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCSCCCCGGGEEECSS--
T ss_pred             CCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHEEEcCC--
Confidence            899999998765  57888888888888888                       999999999999999999988610  


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       153 --------------------------------------------------------------------------------  152 (361)
T 3uc3_A          153 --------------------------------------------------------------------------------  152 (361)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcce--eccccccccccceeeCceeeecCCCCCc-cceeeeeeeeEeecccccccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQP-CDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~--~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                 ....+||+|||++..  .........||+.|+|||++.+..+..+ +|+||+||++|+|++|..||.+.
T Consensus       153 -----------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~  221 (361)
T 3uc3_A          153 -----------PAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDP  221 (361)
T ss_dssp             -----------SSCCEEECCCCCC---------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC--
T ss_pred             -----------CCceEEEeecCccccccccCCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCC
Confidence                       123599999999864  2233355689999999999988887555 89999999999999999999887


Q ss_pred             CCCce
Q psy2006         318 TKTKY  322 (351)
Q Consensus       318 ~~~~~  322 (351)
                      +..+.
T Consensus       222 ~~~~~  226 (361)
T 3uc3_A          222 EEPRD  226 (361)
T ss_dssp             --CCC
T ss_pred             ccHHH
Confidence            65443

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=100.00  E-value=1.5e-35  Score=271.19  Aligned_cols=194  Identities=18%  Similarity=0.269  Sum_probs=164.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|.+..+++.||+|++...    ....+.+.+|+.+++.++|+|      |+++++++..+++.|+||
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~   90 (294)
T 4eqm_A           17 DKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQN------IVSMIDVDEEDDCYYLVM   90 (294)
T ss_dssp             EEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCC------CceEEEeeeeCCeEEEEE
Confidence            6799999999999999999999999998542    233467789999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ |++|.+++....  ++++..+..++.|++.+                       |.|||++|++|||+|+.|+.+.
T Consensus        91 e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~Dlkp~Nil~~  145 (294)
T 4eqm_A           91 EYIEGPTLSEYIESHG--PLSVDTAINFTNQILDG-----------------------IKHAHDMRIVHRDIKPQNILID  145 (294)
T ss_dssp             ECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGGEEEC
T ss_pred             eCCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHHEEEC
Confidence            999 889999998875  57888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (294)
T 4eqm_A          146 --------------------------------------------------------------------------------  145 (294)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                     ....+||+|||++.....    ......||+.|+|||.+.+..++.++|+||+||++|++++|..
T Consensus       146 ---------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~  210 (294)
T 4eqm_A          146 ---------------SNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEP  210 (294)
T ss_dssp             ---------------TTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSC
T ss_pred             ---------------CCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCC
Confidence                           235699999999865322    2234678999999999999899999999999999999999999


Q ss_pred             cccccCCCc
Q psy2006         313 LMARKTKTK  321 (351)
Q Consensus       313 pf~~~~~~~  321 (351)
                      ||.+.+..+
T Consensus       211 pf~~~~~~~  219 (294)
T 4eqm_A          211 PFNGETAVS  219 (294)
T ss_dssp             SSCSSCHHH
T ss_pred             CCCCCChHH
Confidence            998876544

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=4e-36  Score=285.60  Aligned_cols=199  Identities=19%  Similarity=0.228  Sum_probs=170.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||+|+||+||+|.+..+++.||+|++... ......+.+|+.+|+.+.|+|      |++++++|...+.+|+||||+
T Consensus        57 ~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpn------Iv~~~~~~~~~~~~~lv~E~~  130 (387)
T 1kob_A           57 EELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK------LINLHDAFEDKYEMVLILEFL  130 (387)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTT------BCCEEEEEECSSEEEEEEECC
T ss_pred             EEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcC------CCeEEEEEEeCCEEEEEEEcC
Confidence            5799999999999999999999999999754 233457889999999999877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+.+  
T Consensus       131 ~gg~L~~~l~~~~-~~l~~~~~~~i~~qi~~a-----------------------L~~LH~~givHrDlkp~NIll~~--  184 (387)
T 1kob_A          131 SGGELFDRIAAED-YKMSEAEVINYMRQACEG-----------------------LKHMHEHSIVHLDIKPENIMCET--  184 (387)
T ss_dssp             CCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEESS--
T ss_pred             CCCcHHHHHHhhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeecccchHHeEEec--
Confidence             899999987653 357888888888888888                       99999999999999999998751  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (387)
T 1kob_A          185 --------------------------------------------------------------------------------  184 (387)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                 .....+||+|||++.....  ......||+.|+|||++.+..++.++|+|||||++|+|++|..||.+.
T Consensus       185 -----------~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~  253 (387)
T 1kob_A          185 -----------KKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  253 (387)
T ss_dssp             -----------TTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             -----------CCCCceEEEecccceecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCC
Confidence                       0124699999999876432  234467999999999999888999999999999999999999999987


Q ss_pred             CCCcee
Q psy2006         318 TKTKYF  323 (351)
Q Consensus       318 ~~~~~~  323 (351)
                      +..+.+
T Consensus       254 ~~~~~~  259 (387)
T 1kob_A          254 DDLETL  259 (387)
T ss_dssp             SHHHHH
T ss_pred             CHHHHH
Confidence            765544

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=4.2e-36  Score=284.12  Aligned_cols=196  Identities=18%  Similarity=0.279  Sum_probs=161.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHH-HHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINA-LQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~-l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|+++.+++.||||++.+..    .....+.+|..+ ++.+.|++      |++++++|...+++|+|
T Consensus        44 ~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~------Iv~l~~~~~~~~~~~lv  117 (373)
T 2r5t_A           44 KVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPF------LVGLHFSFQTADKLYFV  117 (373)
T ss_dssp             EEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTT------BCCEEEEEECSSEEEEE
T ss_pred             EEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCC------CCCEEEEEEeCCEEEEE
Confidence            67999999999999999999999999997643    223445567666 45677666      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ |++|.+++.+..  .+++..++.++.|++.|                       |+|||++|++|||+|+.||.+
T Consensus       118 ~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~givHrDlkp~NIll  172 (373)
T 2r5t_A          118 LDYINGGELFYHLQRER--CFLEPRARFYAAEIASA-----------------------LGYLHSLNIVYRDLKPENILL  172 (373)
T ss_dssp             EECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGGEEE
T ss_pred             EeCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceecCCCHHHEEE
Confidence            9999 899999998765  57777788788877777                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       173 ~-------------------------------------------------------------------------------  173 (373)
T 2r5t_A          173 D-------------------------------------------------------------------------------  173 (373)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   .......+||+.|+|||++.+..++.++|+|||||++|+|++|..
T Consensus       174 ----------------~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~  237 (373)
T 2r5t_A          174 ----------------SQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLP  237 (373)
T ss_dssp             ----------------TTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------CCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCC
Confidence                            2357999999998752   233456789999999999999999999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       238 Pf~~~~~~~~~  248 (373)
T 2r5t_A          238 PFYSRNTAEMY  248 (373)
T ss_dssp             TTCCSBHHHHH
T ss_pred             CCCCCCHHHHH
Confidence            99887766554

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=3.3e-36  Score=279.49  Aligned_cols=194  Identities=22%  Similarity=0.253  Sum_probs=165.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||+|+||+||+|++..+++.||+|++....  ...+.+.+|+.+++.++|+|      |+++++++...++.|+||||
T Consensus        13 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpn------Iv~~~~~~~~~~~~~lv~e~   86 (323)
T 3tki_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN------VVKFYGHRREGNIQYLFLEY   86 (323)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEEEEEC
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCC------CCeEEEEEecCCeEEEEEEc
Confidence            67999999999999999999999999996532  23466789999999999877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|++||.+.  
T Consensus        87 ~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~a-----------------------L~~LH~~givH~Dlkp~NIll~--  139 (323)
T 3tki_A           87 CSGGELFDRIEPDI--GMPEPDAQRFFHQLMAG-----------------------VVYLHGIGITHRDIKPENLLLD--  139 (323)
T ss_dssp             CTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEEC--
T ss_pred             CCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccccchHHEEEe--
Confidence            9 889999987654  57888888888888888                       9999999999999999999886  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (323)
T 3tki_A          140 --------------------------------------------------------------------------------  139 (323)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeeecCCC-CCccceeeeeeeeEeeccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~  312 (351)
                                   ....+||+|||++....     .......||+.|+|||++.+..+ +.++|+|||||++|+|++|..
T Consensus       140 -------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~  206 (323)
T 3tki_A          140 -------------ERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGEL  206 (323)
T ss_dssp             -------------TTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSC
T ss_pred             -------------CCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCC
Confidence                         23569999999986532     22345789999999999988776 778999999999999999999


Q ss_pred             cccccCCCc
Q psy2006         313 LMARKTKTK  321 (351)
Q Consensus       313 pf~~~~~~~  321 (351)
                      ||...+...
T Consensus       207 pf~~~~~~~  215 (323)
T 3tki_A          207 PWDQPSDSC  215 (323)
T ss_dssp             SCSSSCTTS
T ss_pred             CCCCCchHH
Confidence            998766543

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=1.8e-35  Score=280.62  Aligned_cols=205  Identities=25%  Similarity=0.450  Sum_probs=178.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      ++||+|+||+||+|.+..+++.||||++.........+..|+++++.+.+.+...+.+|+.++++|...+++|+||||++
T Consensus        60 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~~lv~e~~~  139 (382)
T 2vx3_A           60 SLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKKAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNHLCLVFEMLS  139 (382)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECSSHHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTEEEEEEECCC
T ss_pred             EEEeecCCEEEEEEEEcCCCcEEEEEEEeccHHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCceEEEEecCC
Confidence            57999999999999999999999999998765556777889999999975443355669999999999999999999998


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccc--cccccccccCCCCeEEeecC
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN--KKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH--~~~i~h~d~k~~ni~l~Dfg  159 (351)
                      ++|.+++.......+++..++.++.|++.|                       |.|||  +.|++|||+|+.||.+.+  
T Consensus       140 ~~L~~~l~~~~~~~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~~~ivHrDlkp~NIll~~--  194 (382)
T 2vx3_A          140 YNLYDLLRNTNFRGVSLNLTRKFAQQMCTA-----------------------LLFLATPELSIIHCDLKPENILLCN--  194 (382)
T ss_dssp             CBHHHHHHHTTTSCCCHHHHHHHHHHHHHH-----------------------HHHHTSTTTCEECCCCSGGGEEESS--
T ss_pred             CCHHHHHhhcCcCCCCHHHHHHHHHHHHHH-----------------------HHHhccCCCCEEcCCCCcccEEEec--
Confidence            899999998765668888888888888888                       99999  579999999999998851  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       195 --------------------------------------------------------------------------------  194 (382)
T 2vx3_A          195 --------------------------------------------------------------------------------  194 (382)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccCC
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKTK  319 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~  319 (351)
                                 .....+||+|||++...........||+.|+|||++.+.+++.++|+|||||++|+|+||..||.+.+.
T Consensus       195 -----------~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~  263 (382)
T 2vx3_A          195 -----------PKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANE  263 (382)
T ss_dssp             -----------TTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred             -----------CCCCcEEEEeccCceecccccccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCH
Confidence                       013569999999998766666778899999999999999999999999999999999999999998765


Q ss_pred             Cce
Q psy2006         320 TKY  322 (351)
Q Consensus       320 ~~~  322 (351)
                      .+.
T Consensus       264 ~~~  266 (382)
T 2vx3_A          264 VDQ  266 (382)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.5e-35  Score=281.69  Aligned_cols=195  Identities=23%  Similarity=0.364  Sum_probs=150.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCC--eEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHG--HMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~--~~~l   75 (351)
                      ++||+|+||+||+|.+..+++.||||++...   ........+|+.+|+.+. |+|      |++++++|...+  ++|+
T Consensus        15 ~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~n------iv~l~~~~~~~~~~~~~l   88 (388)
T 3oz6_A           15 KKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHEN------IVNLLNVLRADNDRDVYL   88 (388)
T ss_dssp             EC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTT------BCCEEEEEECTTSSCEEE
T ss_pred             EEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCC------CCeeeeEEecCCCCEEEE
Confidence            6899999999999999999999999999643   334556788999999997 777      999999998655  8999


Q ss_pred             EEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          76 AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||||++++|.+++...   .+++..++.++.|++.|                       |+|||+.|++|||+|++||.+
T Consensus        89 v~e~~~~~L~~~~~~~---~~~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivHrDlkp~NIll  142 (388)
T 3oz6_A           89 VFDYMETDLHAVIRAN---ILEPVHKQYVVYQLIKV-----------------------IKYLHSGGLLHRDMKPSNILL  142 (388)
T ss_dssp             EEECCSEEHHHHHHHT---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEE
T ss_pred             EecccCcCHHHHHHcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEEeCCCCHHHeEE
Confidence            9999988999999874   46777777777777777                       999999999999999999765


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       143 ~-------------------------------------------------------------------------------  143 (388)
T 3oz6_A          143 N-------------------------------------------------------------------------------  143 (388)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            4                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee------------------------ccccccccccceeeCceeeec-CC
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD------------------------DEHHSTIVSTRHYRAPEVILE-LG  290 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~------------------------~~~~~~~~gt~~y~aPE~~~~-~~  290 (351)
                                      ..+.+||+|||+++..                        .......+||+.|+|||++.+ ..
T Consensus       144 ----------------~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  207 (388)
T 3oz6_A          144 ----------------AECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTK  207 (388)
T ss_dssp             ----------------TTCCEEECCCTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCC
T ss_pred             ----------------CCCCEEecCCcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCC
Confidence                            1234666666665431                        112244689999999999987 57


Q ss_pred             CCCccceeeeeeeeEeeccccccccccCCCcee
Q psy2006         291 WAQPCDVWSIGCIIFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       291 ~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~~~  323 (351)
                      ++.++|+||+||++|+|++|.+||.+.+..+.+
T Consensus       208 ~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~  240 (388)
T 3oz6_A          208 YTKGIDMWSLGCILGEILCGKPIFPGSSTMNQL  240 (388)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHH
T ss_pred             CCChhhHHHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence            899999999999999999999999988765544

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=5.8e-36  Score=283.31  Aligned_cols=199  Identities=19%  Similarity=0.233  Sum_probs=165.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+||+||+|.+..+++.||+|++.... ...+.+.+|+++|+.++|+|      |++++++|...+++||||||+
T Consensus        95 ~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpn------Iv~~~~~~~~~~~~~lv~E~~  168 (373)
T 2x4f_A           95 EILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHAN------LIQLYDAFESKNDIVLVMEYV  168 (373)
T ss_dssp             EECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTT------BCCEEEEEECSSEEEEEEECC
T ss_pred             eEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCC------CCeEEEEEEECCEEEEEEeCC
Confidence            46999999999999999999999999997642 34567889999999998877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.... ..+++..+..++.|++.|                       |+|||++|++|||+|+.||.+.+- 
T Consensus       169 ~~~~L~~~l~~~~-~~l~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~Dlkp~NIll~~~-  223 (373)
T 2x4f_A          169 DGGELFDRIIDES-YNLTELDTILFMKQICEG-----------------------IRHMHQMYILHLDLKPENILCVNR-  223 (373)
T ss_dssp             TTCEEHHHHHHTG-GGCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEEEET-
T ss_pred             CCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccccCCHHHEEEecC-
Confidence             889999987653 357777777777777777                       999999999999999999988620 


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       224 --------------------------------------------------------------------------------  223 (373)
T 2x4f_A          224 --------------------------------------------------------------------------------  223 (373)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                  ....+||+|||++.....  ......||+.|+|||++.+..++.++|+|||||++|+|++|..||.+.
T Consensus       224 ------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  291 (373)
T 2x4f_A          224 ------------DAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGD  291 (373)
T ss_dssp             ------------TTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred             ------------CCCcEEEEeCCCceecCCccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCC
Confidence                        134699999999876432  234467999999999998888899999999999999999999999988


Q ss_pred             CCCcee
Q psy2006         318 TKTKYF  323 (351)
Q Consensus       318 ~~~~~~  323 (351)
                      +..+.+
T Consensus       292 ~~~~~~  297 (373)
T 2x4f_A          292 NDAETL  297 (373)
T ss_dssp             SHHHHH
T ss_pred             CHHHHH
Confidence            766554

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=2e-35  Score=272.68  Aligned_cols=197  Identities=23%  Similarity=0.325  Sum_probs=166.0

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||+|+||+||+|.+ .+++.||+|++....   .....+.+|+++++.++|+|      |+++++++...+++|+||
T Consensus        26 ~~~lG~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~   98 (311)
T 3niz_A           26 LEKVGEGTYGVVYKAKD-SQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPN------IVSLIDVIHSERCLTLVF   98 (311)
T ss_dssp             EEEEEECSSCEEEEEEE-TTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTT------BCCEEEEECCSSCEEEEE
T ss_pred             hhhccCCCCeEEEEEEE-CCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCC------EeeeeeEEccCCEEEEEE
Confidence            36899999999999998 469999999997532   22356789999999999877      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||+.++|.+++.... ..+++..++.++.|++.|                       |.|||++|++|||+|++||.+. 
T Consensus        99 e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~LH~~~ivH~Dikp~NIl~~-  153 (311)
T 3niz_A           99 EFMEKDLKKVLDENK-TGLQDSQIKIYLYQLLRG-----------------------VAHCHQHRILHRDLKPQNLLIN-  153 (311)
T ss_dssp             ECCSEEHHHHHHTCT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEEC-
T ss_pred             cCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCchHhEEEC-
Confidence            999889999988764 357888888888888888                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (311)
T 3niz_A          154 --------------------------------------------------------------------------------  153 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ..+.+||+|||++....   .......||+.|+|||++.+ ..++.++|+||+||++|+|++|..|
T Consensus       154 --------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p  219 (311)
T 3niz_A          154 --------------SDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPL  219 (311)
T ss_dssp             --------------TTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             --------------CCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCC
Confidence                          23569999999987643   22344678999999999876 4579999999999999999999999


Q ss_pred             ccccCCCcee
Q psy2006         314 MARKTKTKYF  323 (351)
Q Consensus       314 f~~~~~~~~~  323 (351)
                      |.+.+..+.+
T Consensus       220 f~~~~~~~~~  229 (311)
T 3niz_A          220 FPGVTDDDQL  229 (311)
T ss_dssp             CCCSSTTTHH
T ss_pred             CCCCChHHHH
Confidence            9988877654

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=1.3e-35  Score=300.78  Aligned_cols=197  Identities=17%  Similarity=0.250  Sum_probs=170.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|+++.+++.||||++.+..    ...+....|..+|..+. |++      |+.++++|...+++|||
T Consensus       347 ~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~------i~~l~~~~~~~~~~~lV  420 (674)
T 3pfq_A          347 MVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPF------LTQLHSCFQTMDRLYFV  420 (674)
T ss_dssp             EESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTT------BCCEEEECBCSSEEEEE
T ss_pred             EEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCe------EEEEEEEEEeCCEEEEE
Confidence            57999999999999999999999999997532    33456778999998874 444      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ |++|.+++...+  .+++..++.++.|++.|                       |+|||++||+|||+|++||.|
T Consensus       421 ~E~~~gg~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~gIiHrDLKp~NILl  475 (674)
T 3pfq_A          421 MEYVNGGDLMYHIQQVG--RFKEPHAVFYAAEIAIG-----------------------LFFLQSKGIIYRDLKLDNVML  475 (674)
T ss_dssp             EECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTSEECCCCCSTTEEE
T ss_pred             EeCcCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEeccCChhhEEE
Confidence            9999 899999998875  57888888888888887                       999999999999999999998


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       476 ~-------------------------------------------------------------------------------  476 (674)
T 3pfq_A          476 D-------------------------------------------------------------------------------  476 (674)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   .......+||+.|+|||++.+.+++.++|+|||||++|+|++|..
T Consensus       477 ----------------~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~  540 (674)
T 3pfq_A          477 ----------------SEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQA  540 (674)
T ss_dssp             ----------------SSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------CCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCC
Confidence                            2457999999998752   233456789999999999999999999999999999999999999


Q ss_pred             cccccCCCceee
Q psy2006         313 LMARKTKTKYFY  324 (351)
Q Consensus       313 pf~~~~~~~~~~  324 (351)
                      ||.+.+..+++.
T Consensus       541 Pf~~~~~~~~~~  552 (674)
T 3pfq_A          541 PFEGEDEDELFQ  552 (674)
T ss_dssp             SSCCSSHHHHHH
T ss_pred             CCCCCCHHHHHH
Confidence            999988776653

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=1.5e-35  Score=274.04  Aligned_cols=198  Identities=22%  Similarity=0.352  Sum_probs=159.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||+|+||+||+|.+..+++.||+|++....  ...+.+.+|+++|+.++|+|      |++++++|..++++|+|||
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~e   83 (317)
T 2pmi_A           10 LEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHEN------IVRLYDVIHTENKLTLVFE   83 (317)
T ss_dssp             ---------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTT------BCCEEEEECCTTEEEEEEE
T ss_pred             eeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCC------cceEEEEEEECCeEEEEEE
Confidence            468999999999999999999999999997532  23467789999999999887      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCC----CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          79 ILGLSVFDFLKENNY----LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~----~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |+.++|.+++.....    ..+++..++.++.|++.|                       |.|||++|++|||+|+.||.
T Consensus        84 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------L~~lH~~~ivH~Dlkp~NIl  140 (317)
T 2pmi_A           84 FMDNDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQG-----------------------LAFCHENKILHRDLKPQNLL  140 (317)
T ss_dssp             CCCCBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEE
T ss_pred             ecCCCHHHHHHhccccccccCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeCCCChHHeE
Confidence            998899999976521    246777777777777777                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       141 ~~------------------------------------------------------------------------------  142 (317)
T 2pmi_A          141 IN------------------------------------------------------------------------------  142 (317)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG  310 (351)
                                       ..+.+||+|||++....   .......||+.|+|||++.+. .++.++|+|||||++|+|++|
T Consensus       143 -----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g  205 (317)
T 2pmi_A          143 -----------------KRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITG  205 (317)
T ss_dssp             -----------------TTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             -----------------CCCCEEECcCccceecCCCcccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhC
Confidence                             23569999999987633   223456789999999999764 679999999999999999999


Q ss_pred             cccccccCCCce
Q psy2006         311 ITLMARKTKTKY  322 (351)
Q Consensus       311 ~~pf~~~~~~~~  322 (351)
                      ..||.+.+..+.
T Consensus       206 ~~pf~~~~~~~~  217 (317)
T 2pmi_A          206 KPLFPGTNDEEQ  217 (317)
T ss_dssp             SCSCCCSSHHHH
T ss_pred             CCCCCCCChHHH
Confidence            999988776544

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=100.00  E-value=2.5e-35  Score=273.97  Aligned_cols=199  Identities=17%  Similarity=0.170  Sum_probs=167.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+||+||+|.+..+++.||||++.... ..+.+.+|+++++.+ .|+|      |+++++++...++.++||||+
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~~h~~------i~~~~~~~~~~~~~~lv~e~~   87 (330)
T 2izr_A           15 KKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS-RAPQLHLEYRFYKQLGSGDG------IPQVYYFGPCGKYNAMVLELL   87 (330)
T ss_dssp             EECCC-CTTSEEEEEETTTTEEEEEEEEETTC-SSCCHHHHHHHHHHHCSCTT------SCCEEEEEEETTEEEEEEECC
T ss_pred             EEeeccCCceEEEEEECCCCcEEEEEEecccc-chHHHHHHHHHHHHhhCCCC------CCEEEEEEecCCccEEEEEeC
Confidence            67999999999999999999999999997532 245678899999999 7766      999999999999999999999


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..+++..+..++.|++.|                       |+|||++|++|||+|+.||.+.+-|-
T Consensus        88 ~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~iiHrDlkp~Nill~~~~~  143 (330)
T 2izr_A           88 GPSLEDLFDLCD-RTFSLKTVLMIAIQLISR-----------------------MEYVHSKNLIYRDVKPENFLIGRPGN  143 (330)
T ss_dssp             CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEECCGGG
T ss_pred             CCCHHHHHHHcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccCCCHHHeeeccCCC
Confidence            999999998753 367888888888888888                       99999999999999999998872110


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (330)
T 2izr_A          144 --------------------------------------------------------------------------------  143 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccc----------cccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEH----------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                .....+||+|||++......          .....||+.|+|||++.+..++.++|+|||||++|+|++|
T Consensus       144 ----------~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g  213 (330)
T 2izr_A          144 ----------KTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRG  213 (330)
T ss_dssp             ----------TCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ----------CCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcC
Confidence                      01234999999998753221          2457899999999999999999999999999999999999


Q ss_pred             cccccccCCCc
Q psy2006         311 ITLMARKTKTK  321 (351)
Q Consensus       311 ~~pf~~~~~~~  321 (351)
                      ..||.+.+..+
T Consensus       214 ~~Pf~~~~~~~  224 (330)
T 2izr_A          214 SLPWQGLKADT  224 (330)
T ss_dssp             SCTTTTCCCSS
T ss_pred             CCCcccccccc
Confidence            99999865543

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=1.5e-35  Score=288.13  Aligned_cols=192  Identities=22%  Similarity=0.402  Sum_probs=159.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~   72 (351)
                      ++||+|+||+||+|.+..+++.||||++...   ....+.+.+|+.+|+.++|+|      |++++++|...+      +
T Consensus        68 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------Iv~l~~~~~~~~~~~~~~~  141 (464)
T 3ttj_A           68 KPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN------IISLLNVFTPQKTLEEFQD  141 (464)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTT------BCCCSEEECSCCSTTTCCE
T ss_pred             EEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCC------CCcEEEEEccCCccccCCe
Confidence            6799999999999999999999999999753   234567789999999999887      999999997653      7


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +||||||++++|.+.+..    .+++..++.++.|++.|                       |+|||++|++|||+|++|
T Consensus       142 ~~lv~E~~~~~l~~~~~~----~l~~~~~~~~~~qil~a-----------------------L~~lH~~~iiHrDlkp~N  194 (464)
T 3ttj_A          142 VYLVMELMDANLCQVIQM----ELDHERMSYLLYQMLCG-----------------------IKHLHSAGIIHRDLKPSN  194 (464)
T ss_dssp             EEEEEECCSEEHHHHHTS----CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGG
T ss_pred             EEEEEeCCCCCHHHHHhh----cCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCChHh
Confidence            899999998888887754    36777788888877777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       195 Ill~----------------------------------------------------------------------------  198 (464)
T 3ttj_A          195 IVVK----------------------------------------------------------------------------  198 (464)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEEe----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                         ..+.+||+|||++.....  .....+||+.|+|||++.+.+++.++||||+||++|+|++|
T Consensus       199 -------------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g  259 (464)
T 3ttj_A          199 -------------------SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRH  259 (464)
T ss_dssp             -------------------TTSCEEECCCCCC-----CCCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHS
T ss_pred             -------------------CCCCEEEEEEEeeeecCCCcccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhC
Confidence                               235799999999976433  34567899999999999999999999999999999999999


Q ss_pred             cccccccCCCc
Q psy2006         311 ITLMARKTKTK  321 (351)
Q Consensus       311 ~~pf~~~~~~~  321 (351)
                      ..||.+.+..+
T Consensus       260 ~~pF~g~~~~~  270 (464)
T 3ttj_A          260 KILFPGRDYID  270 (464)
T ss_dssp             SCSSCCSSHHH
T ss_pred             CCCCCCCCHHH
Confidence            99998876444

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=2.8e-35  Score=285.79  Aligned_cols=214  Identities=25%  Similarity=0.314  Sum_probs=140.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC-----Ce
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH-----GH   72 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~-----~~   72 (351)
                      ++.||+|+||+||+|+++.+++.||||++...   ....+.+.+|+++|+.++|+|      |++++++|...     .+
T Consensus        58 ~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           58 RHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDH------VVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTT------BCCEEEECCCSCTTTCCC
T ss_pred             eeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCC------CCceEEEEecCCcccCce
Confidence            46899999999999999999999999999653   234467889999999999887      99999999543     58


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +|+||||++++|.+++....  .+++..++.++.||+.|                       |.|||+.||+|||+|++|
T Consensus       132 ~~lv~e~~~~~L~~~~~~~~--~l~~~~~~~~~~qi~~a-----------------------L~~LH~~~iiHrDlKp~N  186 (458)
T 3rp9_A          132 LYVVLEIADSDFKKLFRTPV--YLTELHIKTLLYNLLVG-----------------------VKYVHSAGILHRDLKPAN  186 (458)
T ss_dssp             EEEEECCCSEEHHHHHHSSC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCCGGG
T ss_pred             EEEEEeccccchhhhcccCC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcCCCCCChhh
Confidence            99999999999999997754  57888888888888877                       999999999999999887


Q ss_pred             e--------EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         153 I--------RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       153 i--------~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      |        +|+|||+|+............+  .                                              
T Consensus       187 ILl~~~~~~kl~DFGla~~~~~~~~~~~~~~--~----------------------------------------------  218 (458)
T 3rp9_A          187 CLVNQDCSVKVCDFGLARTVDYPENGNSQLP--I----------------------------------------------  218 (458)
T ss_dssp             EEECTTCCEEECCCTTCBCTTSCTTCCCCCC-------------------------------------------------
T ss_pred             EEECCCCCEeecccccchhccCccccccccc--c----------------------------------------------
Confidence            5        6667776654322211000000  0                                              


Q ss_pred             CchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeee-cCCCCCccceeeeeee
Q psy2006         225 PSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCI  303 (351)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~~DiwslG~~  303 (351)
                                               ........+.+|+............+||+.|+|||++. +..++.++|||||||+
T Consensus       219 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~i  273 (458)
T 3rp9_A          219 -------------------------SPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCI  273 (458)
T ss_dssp             ---------------------------------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHH
T ss_pred             -------------------------CccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHH
Confidence                                     00011122333333322233445678899999999874 5678999999999999


Q ss_pred             eEeecc-----------ccccccccC
Q psy2006         304 IFELYL-----------GITLMARKT  318 (351)
Q Consensus       304 l~~l~t-----------G~~pf~~~~  318 (351)
                      +|+|++           |.+||.+.+
T Consensus       274 l~elltg~~~~~~~~~~~~p~f~g~~  299 (458)
T 3rp9_A          274 FAELLNMIKENVAYHADRGPLFPGSS  299 (458)
T ss_dssp             HHHHHTTSTTTCSSGGGCCCSCC---
T ss_pred             HHHHHHhccccccccccccccCCCCc
Confidence            999999           677776654

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=2.8e-35  Score=291.34  Aligned_cols=194  Identities=19%  Similarity=0.281  Sum_probs=170.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|+++.+++.||+|++.+..    .....+.+|+++|+.+.|++      |++++++|...+++|+||
T Consensus       190 ~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~------Iv~l~~~~~~~~~l~lVm  263 (576)
T 2acx_A          190 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRF------VVSLAYAYETKDALCLVL  263 (576)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCC------EeeEEEEEeeCCEEEEEE
Confidence            57999999999999999999999999997532    23356788999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ |++|.+++.......+++..++.++.|++.|                       |+|||++|++|||+|+.||.+.
T Consensus       264 Ey~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~a-----------------------L~yLH~~gIvHrDLKPeNILld  320 (576)
T 2acx_A          264 TLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCG-----------------------LEDLHRERIVYRDLKPENILLD  320 (576)
T ss_dssp             CCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEEC
T ss_pred             EcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeccCCchheEEEe
Confidence            999 9999999987765568888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       321 --------------------------------------------------------------------------------  320 (576)
T 2acx_A          321 --------------------------------------------------------------------------------  320 (576)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                     ..+.+||+|||++.....  .....+||+.|+|||++.+..++.++|+|||||++|+|++|..||
T Consensus       321 ---------------~~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF  385 (576)
T 2acx_A          321 ---------------DHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPF  385 (576)
T ss_dssp             ---------------TTSCEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSS
T ss_pred             ---------------CCCCeEEEecccceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCC
Confidence                           245799999999976432  334568999999999998888999999999999999999999999


Q ss_pred             cccCC
Q psy2006         315 ARKTK  319 (351)
Q Consensus       315 ~~~~~  319 (351)
                      .+.+.
T Consensus       386 ~~~~~  390 (576)
T 2acx_A          386 QQRKK  390 (576)
T ss_dssp             SCSSS
T ss_pred             ccccc
Confidence            88654

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=4.4e-35  Score=267.44  Aligned_cols=191  Identities=21%  Similarity=0.310  Sum_probs=163.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||+|+||+||+|.++.+++.||+|++....   ...+.+.+|+.+++.++|+|      |++++++|..++++|+||
T Consensus         7 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~   80 (292)
T 3o0g_A            7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN------IVRLHDVLHSDKKLTLVF   80 (292)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTT------BCCEEEEEEETTEEEEEE
T ss_pred             eeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCC------EeeEEeEEEeCCEEEEEE
Confidence            368999999999999999999999999997532   33466789999999999877      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||+++++.+.+.... ..+++..++.++.|++.|                       |+|||++|++|||+|+.||.+. 
T Consensus        81 e~~~~~l~~~~~~~~-~~l~~~~~~~~~~ql~~~-----------------------l~~lH~~~ivH~dikp~Nil~~-  135 (292)
T 3o0g_A           81 EFCDQDLKKYFDSCN-GDLDPEIVKSFLFQLLKG-----------------------LGFCHSRNVLHRDLKPQNLLIN-  135 (292)
T ss_dssp             ECCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC-
T ss_pred             ecCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHEEEc-
Confidence            999888888887654 468888888888888888                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (292)
T 3o0g_A          136 --------------------------------------------------------------------------------  135 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCC-CCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ..+.+||+|||++....   .......||+.|+|||++.+.. ++.++|+||+||++|+|++|..|
T Consensus       136 --------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p  201 (292)
T 3o0g_A          136 --------------RNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRP  201 (292)
T ss_dssp             --------------TTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCC
T ss_pred             --------------CCCCEEEeecccceecCCccccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCC
Confidence                          23579999999987643   2334567899999999998765 79999999999999999988777


Q ss_pred             ccc
Q psy2006         314 MAR  316 (351)
Q Consensus       314 f~~  316 (351)
                      |..
T Consensus       202 ~~~  204 (292)
T 3o0g_A          202 LFP  204 (292)
T ss_dssp             SCC
T ss_pred             CcC
Confidence            543

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=100.00  E-value=3.5e-35  Score=276.78  Aligned_cols=209  Identities=11%  Similarity=0.109  Sum_probs=165.4

Q ss_pred             ccccCcccceEEEEE-----EeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNV-----VYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~-----~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||+|+||+||+|.     +..+++.||+|++...  ....+..|+++++.+.+.   .|.||+.+++++...++.|||
T Consensus        71 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~--~~~~~~~e~~~~~~l~~~---~~~~iv~~~~~~~~~~~~~lv  145 (365)
T 3e7e_A           71 HLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA--NPWEFYIGTQLMERLKPS---MQHMFMKFYSAHLFQNGSVLV  145 (365)
T ss_dssp             EEEEECSSEEEEEEEC-------CCCCEEEEEESSC--CHHHHHHHHHHHHHSCGG---GGGGBCCEEEEEECSSCEEEE
T ss_pred             EEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC--ChhHHHHHHHHHHHhhhh---hhhhhhhhheeeecCCCcEEE
Confidence            469999999999994     6678999999999753  345677899999998621   233499999999999999999


Q ss_pred             Eecc-CCCHHHHHHhc---CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          77 FEIL-GLSVFDFLKEN---NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~---~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      |||+ +++|.+++...   ....+++..++.++.|++.|                       |+|||++|++|||+|+.|
T Consensus       146 ~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~-----------------------L~~lH~~~ivHrDiKp~N  202 (365)
T 3e7e_A          146 GELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYM-----------------------IEQVHDCEIIHGDIKPDN  202 (365)
T ss_dssp             ECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECCCCSGGG
T ss_pred             EeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHH-----------------------HHHHhhCCeecCCCCHHH
Confidence            9999 89999999864   22457888888888888887                       999999999999999999


Q ss_pred             eEEee-cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         153 IRLID-FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       153 i~l~D-fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |.+.+ |.-.                                                                      
T Consensus       203 Ill~~~~~~~----------------------------------------------------------------------  212 (365)
T 3e7e_A          203 FILGNGFLEQ----------------------------------------------------------------------  212 (365)
T ss_dssp             EEECGGGTCC----------------------------------------------------------------------
T ss_pred             EEecccccCc----------------------------------------------------------------------
Confidence            99872 0000                                                                      


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCccee-----ccccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD-----DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                     .........+||+|||++...     .......+||+.|+|||++.+..++.++|+|||||++|+
T Consensus       213 ---------------~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~e  277 (365)
T 3e7e_A          213 ---------------DDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYC  277 (365)
T ss_dssp             ---------------------CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHH
T ss_pred             ---------------cccccccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHH
Confidence                           000012467999999999642     223355789999999999999999999999999999999


Q ss_pred             eccccccccccCCCcee
Q psy2006         307 LYLGITLMARKTKTKYF  323 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~~  323 (351)
                      |+||..||...+.....
T Consensus       278 lltg~~pf~~~~~~~~~  294 (365)
T 3e7e_A          278 MLFGTYMKVKNEGGECK  294 (365)
T ss_dssp             HHHSSCCCEEEETTEEE
T ss_pred             HHhCCCccccCCCCcee
Confidence            99999999877665443

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=1.9e-35  Score=289.15  Aligned_cols=199  Identities=24%  Similarity=0.365  Sum_probs=168.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|.+..+++.||+|++....   .....+.+|+++|++++|+|      |+++++++...+++|+|||
T Consensus        28 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~lv~e  101 (486)
T 3mwu_A           28 CMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPN------IMKLFEILEDSSSFYIVGE  101 (486)
T ss_dssp             EEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEEEEC
T ss_pred             EEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCC------cCeEEEEEEcCCEEEEEEE
Confidence            67999999999999999999999999996532   23467889999999999887      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      || +++|.+.+....  .+++..++.++.|++.|                       |.|||++|++|||+||.||.+..
T Consensus       102 ~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~ivH~Dlkp~Nil~~~  156 (486)
T 3mwu_A          102 LYTGGELFDEIIKRK--RFSEHDAARIIKQVFSG-----------------------ITYMHKHNIVHRDLKPENILLES  156 (486)
T ss_dssp             CCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEESS
T ss_pred             cCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeccCchHHEEEec
Confidence            99 899999998765  57888888888888888                       99999999999999999998851


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                      -+                                                                              
T Consensus       157 ~~------------------------------------------------------------------------------  158 (486)
T 3mwu_A          157 KE------------------------------------------------------------------------------  158 (486)
T ss_dssp             SS------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             hhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                    ....+||+|||++...  .......+||+.|+|||++.+ .++.++|+||+||++|+|++|.+||.
T Consensus       159 --------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~  223 (486)
T 3mwu_A          159 --------------KDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFY  223 (486)
T ss_dssp             --------------TTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             --------------CCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                          1356999999998653  223355789999999999865 58899999999999999999999999


Q ss_pred             ccCCCceee
Q psy2006         316 RKTKTKYFY  324 (351)
Q Consensus       316 ~~~~~~~~~  324 (351)
                      +.+..+++.
T Consensus       224 ~~~~~~~~~  232 (486)
T 3mwu_A          224 GKNEYDILK  232 (486)
T ss_dssp             CSSHHHHHH
T ss_pred             CCCHHHHHH
Confidence            887766653

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.7e-35  Score=278.06  Aligned_cols=194  Identities=25%  Similarity=0.470  Sum_probs=162.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~   72 (351)
                      ++||+|+||+||+|.+..+++.||||++...   ....+.+.+|+++|+.++|+|      |++++++|...+      +
T Consensus        31 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------Iv~l~~~~~~~~~~~~~~~  104 (367)
T 1cm8_A           31 QPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHEN------VIGLLDVFTPDETLDDFTD  104 (367)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTT------BCCCSEEECSCSSTTTCCC
T ss_pred             EEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcC------CCCceeeEecCCccccCce
Confidence            5799999999999999999999999999643   234467789999999999887      999999998764      5


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +|+||||++++|.++++..   .+++..++.++.|++.|                       |.|||++|++|||+|++|
T Consensus       105 ~~lv~e~~~~~L~~~~~~~---~l~~~~~~~~~~qi~~~-----------------------L~~LH~~~ivH~Dlkp~N  158 (367)
T 1cm8_A          105 FYLVMPFMGTDLGKLMKHE---KLGEDRIQFLVYQMLKG-----------------------LRYIHAAGIIHRDLKPGN  158 (367)
T ss_dssp             CEEEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGG
T ss_pred             EEEEEecCCCCHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCcCHHH
Confidence            7999999999999999873   47787888888888777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       159 Ill~----------------------------------------------------------------------------  162 (367)
T 1cm8_A          159 LAVN----------------------------------------------------------------------------  162 (367)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                         ..+.+||+|||++...........+|+.|+|||++.+ ..++.++|+||+||++++|++|.
T Consensus       163 -------------------~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~  223 (367)
T 1cm8_A          163 -------------------EDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK  223 (367)
T ss_dssp             -------------------TTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------CCCCEEEEeeecccccccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCC
Confidence                               2357999999999876666667789999999999987 67899999999999999999999


Q ss_pred             ccccccCCCce
Q psy2006         312 TLMARKTKTKY  322 (351)
Q Consensus       312 ~pf~~~~~~~~  322 (351)
                      .||.+.+..+.
T Consensus       224 ~pf~~~~~~~~  234 (367)
T 1cm8_A          224 TLFKGSDHLDQ  234 (367)
T ss_dssp             CSSCCSSHHHH
T ss_pred             CCCCCCCHHHH
Confidence            99998765443

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=4.6e-36  Score=280.74  Aligned_cols=191  Identities=20%  Similarity=0.316  Sum_probs=162.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+||+||+|.++.+++.||+|++.+..   ....+|+++|.++ .|+|      |++++++|...+++|+|||||
T Consensus        28 ~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~---~~~~~E~~~l~~~~~hp~------iv~~~~~~~~~~~~~lv~E~~   98 (342)
T 2qr7_A           28 EDIGVGSYSVCKRCIHKATNMEFAVKIIDKSK---RDPTEEIEILLRYGQHPN------IITLKDVYDDGKYVYVVTELM   98 (342)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEETTT---CCCHHHHHHHHHHTTSTT------BCCEEEEEECSSEEEEEECCC
T ss_pred             EEEeeCCCEEEEEEEECCCCCEEEEEEEEccc---CChHHHHHHHHHhcCCCC------cCeEEEEEEcCCEEEEEEeCC
Confidence            57999999999999999999999999997643   2345689999888 5666      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       |++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+|++||.+.|-+
T Consensus        99 ~gg~L~~~i~~~~--~~~~~~~~~~~~qi~~a-----------------------l~~lH~~givHrDlkp~NIl~~~~~  153 (342)
T 2qr7_A           99 KGGELLDKILRQK--FFSEREASAVLFTITKT-----------------------VEYLHAQGVVHRDLKPSNILYVDES  153 (342)
T ss_dssp             CSCBHHHHHHTCT--TCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGEEESSSS
T ss_pred             CCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcEeccCCHHHEEEecCC
Confidence             899999998764  57888888888888888                       9999999999999999999886200


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (342)
T 2qr7_A          154 --------------------------------------------------------------------------------  153 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                 .....+||+|||++....   ......+||+.|+|||++.+.+++.++|+|||||++|+|++|..||.+
T Consensus       154 -----------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~  222 (342)
T 2qr7_A          154 -----------GNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFAN  222 (342)
T ss_dssp             -----------CSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCS
T ss_pred             -----------CCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCC
Confidence                       012459999999987532   233457889999999999888889999999999999999999999986


Q ss_pred             c
Q psy2006         317 K  317 (351)
Q Consensus       317 ~  317 (351)
                      .
T Consensus       223 ~  223 (342)
T 2qr7_A          223 G  223 (342)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=2.6e-35  Score=273.86  Aligned_cols=196  Identities=20%  Similarity=0.310  Sum_probs=160.5

Q ss_pred             ccccCcccceEEEEEEe---ecCcEEEEEEecchh-----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVY---EVDSVVALKIIKNVE-----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~~-----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||+|+||+||+|++.   .+++.||+|++.+..     .....+.+|+.+|+.+.|+|      |++++++|...+++
T Consensus        23 ~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~   96 (327)
T 3a62_A           23 RVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPF------IVDLIYAFQTGGKL   96 (327)
T ss_dssp             EEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTT------BCCEEEEEECSSCE
T ss_pred             EEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCC------ccceeEEEEcCCEE
Confidence            57999999999999985   589999999997532     23345678999999999877      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      |+||||+ +++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.|
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~ivH~Dlkp~N  151 (327)
T 3a62_A           97 YLILEYLSGGELFMQLEREG--IFMEDTACFYLAEISMA-----------------------LGHLHQKGIIYRDLKPEN  151 (327)
T ss_dssp             EEEEECCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCTTT
T ss_pred             EEEEeCCCCCcHHHHHHhCC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEEcccCCHHH
Confidence            9999999 899999998765  57777888888888777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       152 ill~----------------------------------------------------------------------------  155 (327)
T 3a62_A          152 IMLN----------------------------------------------------------------------------  155 (327)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             eEEC----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                         ..+.+||+|||++...   ........||+.|+|||++.+..++.++|+|||||++|+|++
T Consensus       156 -------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~  216 (327)
T 3a62_A          156 -------------------HQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLT  216 (327)
T ss_dssp             -------------------TTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHH
T ss_pred             -------------------CCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHH
Confidence                               2357999999998652   222345689999999999988889999999999999999999


Q ss_pred             ccccccccCCCcee
Q psy2006         310 GITLMARKTKTKYF  323 (351)
Q Consensus       310 G~~pf~~~~~~~~~  323 (351)
                      |..||.+.+..+.+
T Consensus       217 g~~pf~~~~~~~~~  230 (327)
T 3a62_A          217 GAPPFTGENRKKTI  230 (327)
T ss_dssp             SSCSCCCSSHHHHH
T ss_pred             CCCCCCCCCHHHHH
Confidence            99999887655443

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=4.8e-35  Score=288.56  Aligned_cols=193  Identities=15%  Similarity=0.197  Sum_probs=167.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|+++.+++.||||++.+..    ...+.+.+|+++|+.+.|++      |++++++|...+++|+||
T Consensus       191 ~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~------Iv~l~~~~~~~~~l~lVm  264 (543)
T 3c4z_A          191 RVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRF------IVSLAYAFETKTDLCLVM  264 (543)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCC------EeeEEEEEeeCCEEEEEE
Confidence            56999999999999998899999999997542    22356788999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcC--CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          78 EIL-GLSVFDFLKENN--YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~--~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||+ |++|.+++....  ...+++..++.++.|++.|                       |.|||++|++|||+|++||.
T Consensus       265 E~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~a-----------------------L~~LH~~gIvHrDLKP~NIL  321 (543)
T 3c4z_A          265 TIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSG-----------------------LEHLHQRNIIYRDLKPENVL  321 (543)
T ss_dssp             CCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEE
T ss_pred             EeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHH-----------------------HHHHHHcCCcccCCChHHEE
Confidence            999 899999997753  3357777788777777777                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       322 l~------------------------------------------------------------------------------  323 (543)
T 3c4z_A          322 LD------------------------------------------------------------------------------  323 (543)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             Ee------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                       ..+.+||+|||++......   ....+||+.|+|||++.+.+++.++|+|||||++|+|++|.
T Consensus       324 -----------------~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~  386 (543)
T 3c4z_A          324 -----------------DDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAAR  386 (543)
T ss_dssp             -----------------TTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------CCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCC
Confidence                             2457999999999763322   23458999999999999999999999999999999999999


Q ss_pred             ccccccC
Q psy2006         312 TLMARKT  318 (351)
Q Consensus       312 ~pf~~~~  318 (351)
                      .||.+.+
T Consensus       387 ~PF~~~~  393 (543)
T 3c4z_A          387 GPFRARG  393 (543)
T ss_dssp             CSSCCTT
T ss_pred             CCCCCCc
Confidence            9998764

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=266.48  Aligned_cols=194  Identities=15%  Similarity=0.185  Sum_probs=166.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||+|+||+||+|.+..+++.||+|++... ....+.+.+|+++++.++|+|      |+++++++..+++.++||||+
T Consensus        16 ~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~e~~   89 (310)
T 3s95_A           16 EVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPN------VLKFIGVLYKDKRLNFITEYI   89 (310)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTT------BCCEEEEEEETTEEEEEEECC
T ss_pred             ceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcC------cccEEEEEecCCeeEEEEEec
Confidence            5799999999999999999999999998653 345567889999999999877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.++++... ..+++..+..++.|++.|                       |+|||++|++|||+|+.||.+.   
T Consensus        90 ~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~ivH~dlkp~Nil~~---  142 (310)
T 3s95_A           90 KGGTLRGIIKSMD-SQYPWSQRVSFAKDIASG-----------------------MAYLHSMNIIHRDLNSHNCLVR---  142 (310)
T ss_dssp             TTCBHHHHHHHCC-TTSCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSTTSEEEC---
T ss_pred             CCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccCCCCCcCeEEEC---
Confidence             889999998754 357888888888888888                       9999999999999999999876   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (310)
T 3s95_A          143 --------------------------------------------------------------------------------  142 (310)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecccc-----------------ccccccceeeCceeeecCCCCCccceeeeee
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-----------------STIVSTRHYRAPEVILELGWAQPCDVWSIGC  302 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-----------------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  302 (351)
                                  ....+||+|||++.......                 ....||+.|+|||++.+..++.++|||||||
T Consensus       143 ------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~  210 (310)
T 3s95_A          143 ------------ENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGI  210 (310)
T ss_dssp             ------------TTSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHH
T ss_pred             ------------CCCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHH
Confidence                        23468889999876522111                 1467999999999999999999999999999


Q ss_pred             eeEeeccccccccccCCC
Q psy2006         303 IIFELYLGITLMARKTKT  320 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~~~  320 (351)
                      ++|++++|..||......
T Consensus       211 ~l~el~~g~~~~~~~~~~  228 (310)
T 3s95_A          211 VLCEIIGRVNADPDYLPR  228 (310)
T ss_dssp             HHHHHHHTCCSSTTTSCB
T ss_pred             HHHHHhcCCCCCcchhhh
Confidence            999999999999775543

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=9e-35  Score=276.31  Aligned_cols=198  Identities=14%  Similarity=0.084  Sum_probs=169.9

Q ss_pred             ccccCc--ccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCV--ASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G--~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||+|  +||+||+|++..+++.||||++....   ...+.+.+|+.+|+.++|+|      |++++++|...+++|+|
T Consensus        31 ~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~lv  104 (389)
T 3gni_B           31 TVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPN------IVPYRATFIADNELWVV  104 (389)
T ss_dssp             EEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEE
T ss_pred             ecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCC------CCcEeEEEEECCEEEEE
Confidence            679999  99999999999999999999997542   33456778999999999887      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.......+++..++.++.|++.|                       |.|||++|++|||+|+.||.+
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~LH~~~ivHrDlkp~NIll  161 (389)
T 3gni_B          105 TSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKA-----------------------LDYIHHMGYVHRSVKASHILI  161 (389)
T ss_dssp             EECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEE
T ss_pred             EEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHEEE
Confidence            9999 8999999988755568888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       162 ~-------------------------------------------------------------------------------  162 (389)
T 3gni_B          162 S-------------------------------------------------------------------------------  162 (389)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceec----------cccccccccceeeCceeeec--CCCCCccceeeeeee
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD----------EHHSTIVSTRHYRAPEVILE--LGWAQPCDVWSIGCI  303 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~----------~~~~~~~gt~~y~aPE~~~~--~~~~~~~DiwslG~~  303 (351)
                                      ..+.+||+|||.+....          .......||+.|+|||++.+  ..++.++|+|||||+
T Consensus       163 ----------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~i  226 (389)
T 3gni_B          163 ----------------VDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGIT  226 (389)
T ss_dssp             ----------------TTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHH
T ss_pred             ----------------CCCCEEEcccccceeeccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHH
Confidence                            23578999999865311          11223578999999999987  578999999999999


Q ss_pred             eEeeccccccccccCCCcee
Q psy2006         304 IFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~~~~~  323 (351)
                      +|+|++|..||.+.+..+.+
T Consensus       227 l~el~~g~~pf~~~~~~~~~  246 (389)
T 3gni_B          227 ACELANGHVPFKDMPATQML  246 (389)
T ss_dssp             HHHHHHSSCTTTTCCSTTHH
T ss_pred             HHHHHHCCCCCCCCCHHHHH
Confidence            99999999999887766554

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=2.8e-35  Score=288.55  Aligned_cols=199  Identities=22%  Similarity=0.321  Sum_probs=166.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|+++.+++.||+|++.+..   .....+.+|+.+|+.+.|+|      |++++++|...+++|+|||
T Consensus        43 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~lv~e  116 (494)
T 3lij_A           43 KKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPN------IMKLYDFFEDKRNYYLVME  116 (494)
T ss_dssp             EEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTT------BCCEEEEEECSSEEEEEEE
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCC------CCeEEEEEEeCCEEEEEEe
Confidence            67999999999999999999999999997532   33567789999999999887      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      || +++|.+.+....  .+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.+
T Consensus       117 ~~~~g~L~~~~~~~~--~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~ivH~Dlkp~Nil~~~  171 (494)
T 3lij_A          117 CYKGGELFDEIIHRM--KFNEVDAAVIIKQVLSG-----------------------VTYLHKHNIVHRDLKPENLLLES  171 (494)
T ss_dssp             CCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEESC
T ss_pred             cCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceeccCChhhEEEeC
Confidence            99 889999988764  57788888888888887                       99999999999999999998862


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                      -+                                                                              
T Consensus       172 ~~------------------------------------------------------------------------------  173 (494)
T 3lij_A          172 KE------------------------------------------------------------------------------  173 (494)
T ss_dssp             SS------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                    ....+||+|||++....  ......+||+.|+|||++. ..++.++|+||+||++|+|++|.+||.
T Consensus       174 --------------~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~  238 (494)
T 3lij_A          174 --------------KDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFG  238 (494)
T ss_dssp             --------------TTCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             --------------CCCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCC
Confidence                          12458999999987643  2335578999999999874 578999999999999999999999999


Q ss_pred             ccCCCceee
Q psy2006         316 RKTKTKYFY  324 (351)
Q Consensus       316 ~~~~~~~~~  324 (351)
                      +.+..+++.
T Consensus       239 ~~~~~~~~~  247 (494)
T 3lij_A          239 GQTDQEILR  247 (494)
T ss_dssp             CSSHHHHHH
T ss_pred             CCCHHHHHH
Confidence            988776653

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=2.3e-35  Score=289.90  Aligned_cols=199  Identities=23%  Similarity=0.352  Sum_probs=168.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--------------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--------------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWF   67 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--------------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f   67 (351)
                      ++||+|+||+||+|.++.+++.||+|++....              ...+.+.+|+.+|+.++|+|      |++++++|
T Consensus        42 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~  115 (504)
T 3q5i_A           42 RKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPN------IIKLFDVF  115 (504)
T ss_dssp             EEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTT------BCCEEEEE
T ss_pred             eEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCC------CCeEEEEE
Confidence            68999999999999999999999999997532              23456789999999999877      99999999


Q ss_pred             eeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccc
Q psy2006          68 DYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVR  146 (351)
Q Consensus        68 ~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~  146 (351)
                      ...+++|+||||| +++|.+++....  .+++..++.++.|++.|                       |.|||++|++||
T Consensus       116 ~~~~~~~lv~e~~~gg~L~~~l~~~~--~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~ivH~  170 (504)
T 3q5i_A          116 EDKKYFYLVTEFYEGGELFEQIINRH--KFDECDAANIMKQILSG-----------------------ICYLHKHNIVHR  170 (504)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECS
T ss_pred             EcCCEEEEEEecCCCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEeC
Confidence            9999999999999 889999998765  57888888888888888                       999999999999


Q ss_pred             ccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         147 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      |+|+.|+.+.+-|                                                                   
T Consensus       171 Dlkp~Nil~~~~~-------------------------------------------------------------------  183 (504)
T 3q5i_A          171 DIKPENILLENKN-------------------------------------------------------------------  183 (504)
T ss_dssp             CCSGGGEEESSTT-------------------------------------------------------------------
T ss_pred             CCcHHHEEEecCC-------------------------------------------------------------------
Confidence            9999999886210                                                                   


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeee
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCII  304 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l  304 (351)
                                               ....+||+|||++.....  ......||+.|+|||++. ..++.++|+||+||++
T Consensus       184 -------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il  237 (504)
T 3q5i_A          184 -------------------------SLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIM  237 (504)
T ss_dssp             -------------------------CCSSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHH
T ss_pred             -------------------------CCccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHH
Confidence                                     123689999999976432  345678999999999875 5689999999999999


Q ss_pred             EeeccccccccccCCCceee
Q psy2006         305 FELYLGITLMARKTKTKYFY  324 (351)
Q Consensus       305 ~~l~tG~~pf~~~~~~~~~~  324 (351)
                      |+|++|..||.+.+..+++.
T Consensus       238 ~~ll~g~~pf~~~~~~~~~~  257 (504)
T 3q5i_A          238 YILLCGYPPFGGQNDQDIIK  257 (504)
T ss_dssp             HHHHHSSCSSCCSSHHHHHH
T ss_pred             HHHHhCCCCCCCCCHHHHHH
Confidence            99999999999988776653

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=9.8e-35  Score=268.60  Aligned_cols=198  Identities=17%  Similarity=0.229  Sum_probs=165.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC--eEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--HMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~--~~~lV~   77 (351)
                      +.||+|+||+||+|.+..+++.||+|++....  ...+.+.+|+++|+.++|+|      |+++++++....  +.|+||
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~lv~   88 (319)
T 4euu_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN------IVKLFAIEEETTTRHKVLIM   88 (319)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTT------BCCEEEEEECTTTCCEEEEE
T ss_pred             EEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCC------cceEEEEeecCCCceEEEEE
Confidence            57999999999999999999999999997533  33466789999999999877      999999998766  899999


Q ss_pred             ecc-CCCHHHHHHhcCC-CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          78 EIL-GLSVFDFLKENNY-LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||+ +++|.+++..... ..+++..++.++.|++.|                       |.|||++|++|||+|+.||.+
T Consensus        89 e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivH~Dlkp~NIll  145 (319)
T 4euu_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGG-----------------------MNHLRENGIVHRNIKPGNIMR  145 (319)
T ss_dssp             ECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEE
T ss_pred             eCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEecCCCCHHHEEE
Confidence            999 8999999987632 237888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      ..           .                                                                  
T Consensus       146 ~~-----------~------------------------------------------------------------------  148 (319)
T 4euu_A          146 VI-----------G------------------------------------------------------------------  148 (319)
T ss_dssp             EE-----------C------------------------------------------------------------------
T ss_pred             ec-----------c------------------------------------------------------------------
Confidence            41           0                                                                  


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeee--------cCCCCCccceeeeeeeeE
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVIL--------ELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~--------~~~~~~~~DiwslG~~l~  305 (351)
                                    ......+||+|||++.....  ......||+.|+|||++.        +..++.++|+|||||++|
T Consensus       149 --------------~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~  214 (319)
T 4euu_A          149 --------------EDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFY  214 (319)
T ss_dssp             --------------TTSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHH
T ss_pred             --------------CCCCceEEEccCCCceecCCCCceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHH
Confidence                          00235689999999976432  334567999999999986        467899999999999999


Q ss_pred             eeccccccccccCC
Q psy2006         306 ELYLGITLMARKTK  319 (351)
Q Consensus       306 ~l~tG~~pf~~~~~  319 (351)
                      +|++|..||...+.
T Consensus       215 el~~g~~pf~~~~~  228 (319)
T 4euu_A          215 HAATGSLPFRPFEG  228 (319)
T ss_dssp             HHHHSSCSEECTTC
T ss_pred             HHHhCCCCCCCCCc
Confidence            99999999986543

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=1.5e-35  Score=289.62  Aligned_cols=199  Identities=22%  Similarity=0.342  Sum_probs=170.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|.+..+++.||||++...    ....+.+.+|+++|++++|+|      |++++++|...+++|+||
T Consensus        32 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~lv~  105 (484)
T 3nyv_A           32 RVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPN------IMKLYEFFEDKGYFYLVG  105 (484)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             eEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCC------CCcEEEEEEeCCEEEEEE
Confidence            5799999999999999999999999999653    234567889999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+||.||.+.
T Consensus       106 e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~ivH~Dlkp~Nil~~  160 (484)
T 3nyv_A          106 EVYTGGELFDEIISRK--RFSEVDAARIIRQVLSG-----------------------ITYMHKNKIVHRDLKPENLLLE  160 (484)
T ss_dssp             CCCCSCBHHHHHHTCS--CCBHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEES
T ss_pred             ecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeCCCCHHHEEEe
Confidence            999 999999998764  57888888888888888                       9999999999999999999885


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +-                                                                              
T Consensus       161 ~~------------------------------------------------------------------------------  162 (484)
T 3nyv_A          161 SK------------------------------------------------------------------------------  162 (484)
T ss_dssp             SS------------------------------------------------------------------------------
T ss_pred             cC------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    .....+||+|||++....  ......+||+.|+|||++.+ .++.++|+||+||++|+|++|.+||
T Consensus       163 --------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf  227 (484)
T 3nyv_A          163 --------------SKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPF  227 (484)
T ss_dssp             --------------STTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             --------------CCCCcEEEEeeeeeEEcccccccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCC
Confidence                          023579999999986532  23345689999999999865 6899999999999999999999999


Q ss_pred             cccCCCceee
Q psy2006         315 ARKTKTKYFY  324 (351)
Q Consensus       315 ~~~~~~~~~~  324 (351)
                      .+.+..+++.
T Consensus       228 ~~~~~~~~~~  237 (484)
T 3nyv_A          228 NGANEYDILK  237 (484)
T ss_dssp             CCSSHHHHHH
T ss_pred             CCCCHHHHHH
Confidence            9888766553

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=1.7e-35  Score=286.49  Aligned_cols=196  Identities=22%  Similarity=0.302  Sum_probs=161.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|.+..+++.||||++....    .....+.+|+++|+.+.|+|      |++++++|...+++|+||
T Consensus       154 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~l~~~~~~~~~~~lv~  227 (446)
T 4ejn_A          154 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPF------LTALKYSFQTHDRLCFVM  227 (446)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTT------SCCEEEEEEETTEEEEEE
T ss_pred             EEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCe------EeeEEEEEeeCCEEEEEE
Confidence            57999999999999999999999999997532    23345678999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCCCCeEE
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRRCDIRL  155 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~~ni~l  155 (351)
                      ||+ +++|.+++....  .+++..++.++.|++.|                       |+|||+ +|++|||+|+.||.+
T Consensus       228 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~giiHrDlkp~NIll  282 (446)
T 4ejn_A          228 EYANGGELFFHLSRER--VFSEDRARFYGAEIVSA-----------------------LDYLHSEKNVVYRDLKLENLML  282 (446)
T ss_dssp             CCCSSCBHHHHHHHHS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHHTCCCCCCCCGGGEEE
T ss_pred             eeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHhhcCCEEECCCCHHHEEE
Confidence            999 889999998765  57888888888888888                       999998 999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       283 ~-------------------------------------------------------------------------------  283 (446)
T 4ejn_A          283 D-------------------------------------------------------------------------------  283 (446)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   .......+||+.|+|||++.+..++.++|+|||||++|+|++|..
T Consensus       284 ----------------~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~  347 (446)
T 4ejn_A          284 ----------------KDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL  347 (446)
T ss_dssp             ----------------SSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------CCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCC
Confidence                            2357999999998642   223456789999999999999999999999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       348 Pf~~~~~~~~~  358 (446)
T 4ejn_A          348 PFYNQDHEKLF  358 (446)
T ss_dssp             SSCCSSHHHHH
T ss_pred             CCCCCCHHHHH
Confidence            99887765544

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=4.2e-35  Score=271.70  Aligned_cols=194  Identities=20%  Similarity=0.270  Sum_probs=167.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||+|+||+||+|++..+++.||||++.... ...+.+.+|+.+++.++|+|      |+++++++...+..++||||+
T Consensus        51 ~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~lv~e~~  124 (321)
T 2c30_A           51 VKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN------VVEMYKSYLVGEELWVLMEFL  124 (321)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT------BCCEEEEEEETTEEEEEECCC
T ss_pred             EEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC------cceEEEEEEECCEEEEEEecC
Confidence            47999999999999998899999999997543 33466789999999999877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++...   .+++..+..++.|++.|                       |.|||+.|++|||+|++||.+.   
T Consensus       125 ~~~~L~~~l~~~---~l~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivH~Dlkp~NIll~---  175 (321)
T 2c30_A          125 QGGALTDIVSQV---RLNEEQIATVCEAVLQA-----------------------LAYLHAQGVIHRDIKSDSILLT---  175 (321)
T ss_dssp             CSCBHHHHHTTC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC---
T ss_pred             CCCCHHHHHHhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEEEC---
Confidence             89999998753   47888888888888888                       9999999999999999999886   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (321)
T 2c30_A          176 --------------------------------------------------------------------------------  175 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                  ..+.+||+|||++.....   ......||+.|+|||++.+..++.++|+|||||++|+|++|..||.+
T Consensus       176 ------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~  243 (321)
T 2c30_A          176 ------------LDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFS  243 (321)
T ss_dssp             ------------TTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred             ------------CCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                        235699999999875332   23456899999999999888899999999999999999999999987


Q ss_pred             cCCCce
Q psy2006         317 KTKTKY  322 (351)
Q Consensus       317 ~~~~~~  322 (351)
                      .+..+.
T Consensus       244 ~~~~~~  249 (321)
T 2c30_A          244 DSPVQA  249 (321)
T ss_dssp             SCHHHH
T ss_pred             CCHHHH
Confidence            765443

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=275.74  Aligned_cols=196  Identities=21%  Similarity=0.334  Sum_probs=154.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|.+..+++.||+|++.... ..+.+.+|+.+|+.+.|+|      |++++++|...+..++||||+ 
T Consensus        59 ~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~lv~e~~~  131 (349)
T 2w4o_A           59 SELGRGATSIVYRCKQKGTQKPYALKVLKKTV-DKKIVRTEIGVLLRLSHPN------IIKLKEIFETPTEISLVLELVT  131 (349)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEC-----------CHHHHHCCCTT------BCCEEEEEECSSEEEEEECCCC
T ss_pred             eEEeeCCCEEEEEEEECCCCcEEEEEEeccch-hHHHHHHHHHHHHhCCCCC------CcceeeeEecCCeEEEEEEeCC
Confidence            57999999999999998899999999998643 3456778999999999877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.+-  
T Consensus       132 ~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivH~Dikp~NIll~~~--  184 (349)
T 2w4o_A          132 GGELFDRIVEKG--YYSERDAADAVKQILEA-----------------------VAYLHENGIVHRDLKPENLLYATP--  184 (349)
T ss_dssp             SCBHHHHHTTCS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGGEEESSS--
T ss_pred             CCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeEecCCCcccEEEecC--
Confidence            899999997754  57888888888888888                       999999999999999999988610  


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       185 --------------------------------------------------------------------------------  184 (349)
T 2w4o_A          185 --------------------------------------------------------------------------------  184 (349)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccC
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKT  318 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~  318 (351)
                                .....+||+|||++.....  ......||+.|+|||++.+..++.++|+|||||++|+|++|..||....
T Consensus       185 ----------~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~  254 (349)
T 2w4o_A          185 ----------APDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDER  254 (349)
T ss_dssp             ----------STTCCEEECCCC----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTT
T ss_pred             ----------CCCCCEEEccCccccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCc
Confidence                      0135799999999875332  2345679999999999998889999999999999999999999998776


Q ss_pred             CCc
Q psy2006         319 KTK  321 (351)
Q Consensus       319 ~~~  321 (351)
                      ..+
T Consensus       255 ~~~  257 (349)
T 2w4o_A          255 GDQ  257 (349)
T ss_dssp             CHH
T ss_pred             ccH
Confidence            654

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=4.6e-35  Score=266.91  Aligned_cols=196  Identities=20%  Similarity=0.314  Sum_probs=162.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||+|+||+||+|.+ .+++.||+|++....   ...+.+.+|+++++.++|+|      |+++++++...+++|+||
T Consensus         7 ~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~   79 (288)
T 1ob3_A            7 LEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN------IVKLYDVIHTKKRLVLVF   79 (288)
T ss_dssp             EEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTT------BCCEEEEEECSSCEEEEE
T ss_pred             hhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCC------EeeeeeEEccCCeEEEEE
Confidence            36899999999999998 689999999996532   22366789999999999877      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||+.++|.+++.... ..+++..++.++.|++.|                       |.|||++|++|||+|+.||.+. 
T Consensus        80 e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dlkp~Nil~~-  134 (288)
T 1ob3_A           80 EHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNG-----------------------IAYCHDRRVLHRDLKPQNLLIN-  134 (288)
T ss_dssp             ECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEEC-
T ss_pred             EecCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEEEc-
Confidence            999889999988754 357888888888888888                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (288)
T 1ob3_A          135 --------------------------------------------------------------------------------  134 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ..+.+||+|||++....   .......||+.|+|||++.+. .++.++|+||+||++|+|++|..|
T Consensus       135 --------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~p  200 (288)
T 1ob3_A          135 --------------REGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPL  200 (288)
T ss_dssp             --------------TTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             --------------CCCCEEEeECccccccCccccccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCC
Confidence                          23569999999986532   223445789999999999764 579999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |.+.+..+.
T Consensus       201 f~~~~~~~~  209 (288)
T 1ob3_A          201 FPGVSEADQ  209 (288)
T ss_dssp             CCCSSHHHH
T ss_pred             CCCCCHHHH
Confidence            988765443

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.3e-34  Score=267.17  Aligned_cols=193  Identities=19%  Similarity=0.166  Sum_probs=159.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|++..+++.||||++...   .........|+..+..+ .|+|      |++++++|...+++|+||
T Consensus        63 ~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~------iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           63 SRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPC------CVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             EEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEEE
T ss_pred             heeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCc------EEEEEEEEEeCCEEEEEE
Confidence            5799999999999999989999999998643   22333455666666665 6666      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||++++|.+++.... ..+++..++.++.|++.|                       |+|||+++++|||+|++||.+. 
T Consensus       137 e~~~~~L~~~~~~~~-~~l~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~Dikp~NIll~-  191 (311)
T 3p1a_A          137 ELCGPSLQQHCEAWG-ASLPEAQVWGYLRDTLLA-----------------------LAHLHSQGLVHLDVKPANIFLG-  191 (311)
T ss_dssp             ECCCCBHHHHHHHHC-SCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC-
T ss_pred             eccCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEecCCCCHHHEEEC-
Confidence            999999999998875 468888888888888888                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       192 --------------------------------------------------------------------------------  191 (311)
T 3p1a_A          192 --------------------------------------------------------------------------------  191 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                    ....+||+|||++.....  ......||+.|+|||++.+ .++.++|+|||||+++++++|..||.
T Consensus       192 --------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~  256 (311)
T 3p1a_A          192 --------------PRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPH  256 (311)
T ss_dssp             --------------GGGCEEECCCTTCEECC------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCS
T ss_pred             --------------CCCCEEEccceeeeecccCCCCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCC
Confidence                          235799999999865332  2344678999999998865 78999999999999999999987776


Q ss_pred             ccCCC
Q psy2006         316 RKTKT  320 (351)
Q Consensus       316 ~~~~~  320 (351)
                      +....
T Consensus       257 ~~~~~  261 (311)
T 3p1a_A          257 GGEGW  261 (311)
T ss_dssp             SHHHH
T ss_pred             CccHH
Confidence            65443

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=5.8e-35  Score=270.46  Aligned_cols=200  Identities=24%  Similarity=0.327  Sum_probs=170.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh-------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK-------YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~-------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|.+..+++.||+|++.....       ..+.+.+|+.+++.+.|+|      |+++++++...++.+
T Consensus        18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~   91 (321)
T 2a2a_A           18 EELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHN------VITLHDVYENRTDVV   91 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEE
T ss_pred             eEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCC------cceEEEEEecCCEEE
Confidence            579999999999999999999999999975321       2467889999999999877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++....  .+++..+..++.|++.|                       |.|||++|++|||+|+.||
T Consensus        92 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~a-----------------------L~~lH~~~ivH~dikp~NI  146 (321)
T 2a2a_A           92 LILELVSGGELFDFLAQKE--SLSEEEATSFIKQILDG-----------------------VNYLHTKKIAHFDLKPENI  146 (321)
T ss_dssp             EEECCCCSCBHHHHHHTCS--CEEHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGE
T ss_pred             EEEEcCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCChHHE
Confidence            999999 899999998754  57888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+-|.                                                                         
T Consensus       147 l~~~~~~-------------------------------------------------------------------------  153 (321)
T 2a2a_A          147 MLLDKNI-------------------------------------------------------------------------  153 (321)
T ss_dssp             EESCTTS-------------------------------------------------------------------------
T ss_pred             EEecCCC-------------------------------------------------------------------------
Confidence            8863110                                                                         


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                        ....++|+|||++.....  ......||+.|+|||++.+..++.++|+|||||++|+|++|.
T Consensus       154 ------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  215 (321)
T 2a2a_A          154 ------------------PIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGA  215 (321)
T ss_dssp             ------------------SSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSC
T ss_pred             ------------------CcCCEEEccCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCC
Confidence                              123689999999876432  234567999999999998889999999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      .||.+.+..+.+
T Consensus       216 ~pf~~~~~~~~~  227 (321)
T 2a2a_A          216 SPFLGDTKQETL  227 (321)
T ss_dssp             CSSCCSSHHHHH
T ss_pred             CCCCCCCHHHHH
Confidence            999887766554

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=271.32  Aligned_cols=191  Identities=19%  Similarity=0.285  Sum_probs=158.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|.+ .+++.||+|++...   ....+.+.+|+.+|+.+.|.+++    |+++++++...+++|+|||
T Consensus        15 ~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~----iv~~~~~~~~~~~~~lv~e   89 (343)
T 3dbq_A           15 KQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDK----IIRLYDYEITDQYIYMVME   89 (343)
T ss_dssp             EEESCCSSEEEEEEEC-TTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTT----BCCEEEEEECSSEEEEEEC
T ss_pred             EEEecCCCeEEEEEEe-CCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCc----eEEEeeeEeeCCEEEEEEe
Confidence            6799999999999998 57899999999753   23346678999999999874444    9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      +.+++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.  
T Consensus        90 ~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~iiHrDikp~NIll~--  142 (343)
T 3dbq_A           90 CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEA-----------------------VHTIHQHGIVHSDLKPANFLIV--  142 (343)
T ss_dssp             CCSEEHHHHHHHSC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGGEEEE--
T ss_pred             CCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCcceEEEE--
Confidence            77999999998864  57888888888888888                       9999999999999999999886  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (343)
T 3dbq_A          143 --------------------------------------------------------------------------------  142 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeec-----------CCCCCccceeeeee
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILE-----------LGWAQPCDVWSIGC  302 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DiwslG~  302 (351)
                                    ...+||+|||++.....     ......||+.|+|||++.+           ..++.++|||||||
T Consensus       143 --------------~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~  208 (343)
T 3dbq_A          143 --------------DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGC  208 (343)
T ss_dssp             --------------TTEEEECCCSSSCCC------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHH
T ss_pred             --------------CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHH
Confidence                          23589999999875322     1235679999999999865           56788999999999


Q ss_pred             eeEeeccccccccccC
Q psy2006         303 IIFELYLGITLMARKT  318 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~  318 (351)
                      ++|+|++|..||....
T Consensus       209 il~ell~g~~pf~~~~  224 (343)
T 3dbq_A          209 ILYYMTYGKTPFQQII  224 (343)
T ss_dssp             HHHHHHHSSCTTTTCC
T ss_pred             HHHHHHhCCCcchhhh
Confidence            9999999999997644

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=1.1e-34  Score=282.34  Aligned_cols=196  Identities=21%  Similarity=0.322  Sum_probs=169.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|++..+++.||||++....    ...+.+.+|+++|+.++|+|      |+++++++...+.+|+||
T Consensus        22 ~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~Hpn------Iv~l~~~~~~~~~~~lv~   95 (476)
T 2y94_A           22 DTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPH------IIKLYQVISTPSDIFMVM   95 (476)
T ss_dssp             EEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCC------CCcEEEEEEECCEEEEEE
Confidence            57999999999999998999999999997542    23456789999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++...+  .+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.
T Consensus        96 E~~~gg~L~~~l~~~~--~l~~~~~~~i~~qi~~a-----------------------L~~LH~~givHrDLkp~NIll~  150 (476)
T 2y94_A           96 EYVSGGELFDYICKNG--RLDEKESRRLFQQILSG-----------------------VDYCHRHMVVHRDLKPENVLLD  150 (476)
T ss_dssp             ECCSSEEHHHHTTSSS--SCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECSCCSGGGEEEC
T ss_pred             eCCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCCcccccHHHEEEe
Confidence            999 899999997654  57888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (476)
T 2y94_A          151 --------------------------------------------------------------------------------  150 (476)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCC-CCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ....+||+|||++....  ......+||+.|+|||++.+..+ +.++|+||+||++|+|++|..|
T Consensus       151 ---------------~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~P  215 (476)
T 2y94_A          151 ---------------AHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLP  215 (476)
T ss_dssp             ---------------TTCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ---------------cCCCeEEEeccchhhccccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCC
Confidence                           23579999999987643  23356789999999999988776 6889999999999999999999


Q ss_pred             ccccCCCcee
Q psy2006         314 MARKTKTKYF  323 (351)
Q Consensus       314 f~~~~~~~~~  323 (351)
                      |.+.+..+.+
T Consensus       216 f~~~~~~~~~  225 (476)
T 2y94_A          216 FDDDHVPTLF  225 (476)
T ss_dssp             SCCSSSHHHH
T ss_pred             CCCCCHHHHH
Confidence            9887655443

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.9e-35  Score=273.02  Aligned_cols=198  Identities=22%  Similarity=0.370  Sum_probs=162.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhh--hHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKY--REAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~--~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||+|+||+||+|.+..+++.||+|++......  ...+.+|+++|+.++|+|      |+++++++...++.|+|||
T Consensus         7 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e   80 (324)
T 3mtl_A            7 LDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHAN------IVTLHDIIHTEKSLTLVFE   80 (324)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTT------BCCEEEEEECSSCEEEEEE
T ss_pred             EEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCC------CCeeeeEEeeCCEEEEEec
Confidence            36899999999999999989999999999754321  124457999999998877      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |++++|.+++.... ..+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.  
T Consensus        81 ~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivH~Dikp~NIl~~--  134 (324)
T 3mtl_A           81 YLDKDLKQYLDDCG-NIINMHNVKLFLFQLLRG-----------------------LAYCHRQKVLHRDLKPQNLLIN--  134 (324)
T ss_dssp             CCSEEHHHHHHHTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEEESSCCGGGEEEC--
T ss_pred             ccccCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccCCCcCHHHEEEC--
Confidence            99889999998765 357888888888888888                       9999999999999999999886  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (324)
T 3mtl_A          135 --------------------------------------------------------------------------------  134 (324)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                   ..+.+||+|||++....   .......||+.|+|||++.+ ..++.++|+||+||++|+|++|..||
T Consensus       135 -------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf  201 (324)
T 3mtl_A          135 -------------ERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLF  201 (324)
T ss_dssp             -------------TTCCEEECSSSEEECC------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred             -------------CCCCEEEccCcccccccCCccccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence                         23569999999986532   22344678999999999876 56799999999999999999999999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      .+.+..+.+
T Consensus       202 ~~~~~~~~~  210 (324)
T 3mtl_A          202 PGSTVEEQL  210 (324)
T ss_dssp             CCSSHHHHH
T ss_pred             CCCCHHHHH
Confidence            987765543

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=5.4e-35  Score=271.79  Aligned_cols=201  Identities=19%  Similarity=0.310  Sum_probs=162.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|++..+++.||+|++....   ...+.+.+|+++|+.++|+|      |+++++++..++++|+|||
T Consensus        40 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e  113 (329)
T 3gbz_A           40 TKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRN------IIELKSVIHHNHRLHLIFE  113 (329)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTT------BCCEEEEEEETTEEEEEEE
T ss_pred             EEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCC------cceEEEEEecCCEEEEEEe
Confidence            67999999999999999999999999997532   22345678999999999877      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      |++++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.||.+..-
T Consensus       114 ~~~~~L~~~~~~~~--~~~~~~~~~i~~ql~~~-----------------------l~~LH~~~ivH~Dlkp~NIll~~~  168 (329)
T 3gbz_A          114 YAENDLKKYMDKNP--DVSMRVIKSFLYQLING-----------------------VNFCHSRRCLHRDLKPQNLLLSVS  168 (329)
T ss_dssp             CCSEEHHHHHHHCT--TCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEEEC-
T ss_pred             cCCCCHHHHHhhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEECCCCCHHHEEEecC
Confidence            99889999998875  57888888888888888                       999999999999999999998610


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                      |.                                                                              
T Consensus       169 ~~------------------------------------------------------------------------------  170 (329)
T 3gbz_A          169 DA------------------------------------------------------------------------------  170 (329)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                  .....+||+|||++....   .......||+.|+|||++.+. .++.++|+|||||++|+|++|..||
T Consensus       171 ------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf  238 (329)
T 3gbz_A          171 ------------SETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLF  238 (329)
T ss_dssp             --------------CCEEEECCTTHHHHHC-----------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             ------------CccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCc
Confidence                        023569999999986532   233456789999999999874 4799999999999999999999999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      .+.+..+.+
T Consensus       239 ~~~~~~~~~  247 (329)
T 3gbz_A          239 PGDSEIDQL  247 (329)
T ss_dssp             CCSSHHHHH
T ss_pred             CCCCHHHHH
Confidence            887765543

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=100.00  E-value=1.2e-34  Score=263.58  Aligned_cols=198  Identities=20%  Similarity=0.228  Sum_probs=172.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|.+..+++.||+|++.......+.+.+|+++++.++|+|      |+++++++...+..|+||||+ 
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~~v~e~~~   92 (288)
T 3kfa_A           19 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN------LVQLLGVCTREPPFYIITEFMT   92 (288)
T ss_dssp             EESGGGTTCSEEEEEEGGGTEEEEEEEECSCSTHHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSEEEEEECCT
T ss_pred             eecCCCCceeEEEeEecCCCEEEEEEecCcCHHHHHHHHHHHHHHHhCCCCC------EeeEEEEEccCCCEEEEEEcCC
Confidence            5799999999999999999999999999876666678889999999999877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.......+++..+..++.|++.+                       |.|||++|++|+|+|+.|+.+.    
T Consensus        93 ~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~i~H~dikp~Nil~~----  145 (288)
T 3kfa_A           93 YGNLLDYLRECNRQEVSAVVLLYMATQISSA-----------------------MEYLEKKNFIHRDLAARNCLVG----  145 (288)
T ss_dssp             TEEHHHHHHHCCTTTSCHHHHHHHHHHHHHH-----------------------HHHHHHHTCCCSCCSGGGEEEC----
T ss_pred             CCcHHHHHHhcccCCccHhHHHHHHHHHHHH-----------------------HHHHHHCCccCCCCCcceEEEc----
Confidence            7999999998766678888888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (288)
T 3kfa_A          146 --------------------------------------------------------------------------------  145 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....++|+|||++......    .....+|+.|+|||.+.+..++.++|+||+||++|++++ |..||.
T Consensus       146 -----------~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~  214 (288)
T 3kfa_A          146 -----------ENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP  214 (288)
T ss_dssp             -----------GGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             -----------CCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                       2356999999998753322    223456778999999998899999999999999999999 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+..
T Consensus       215 ~~~~~~~~  222 (288)
T 3kfa_A          215 GIDLSQVY  222 (288)
T ss_dssp             TCCGGGHH
T ss_pred             CCCHHHHH
Confidence            87766554

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=4.7e-34  Score=267.72  Aligned_cols=195  Identities=21%  Similarity=0.207  Sum_probs=167.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|++..+++.||||++...    ....+.+.+|+++|+.++|+|      |++++++|..++..++||
T Consensus        60 ~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~lv~  133 (348)
T 1u5q_A           60 REIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN------TIQYRGCYLREHTAWLVM  133 (348)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEEE
T ss_pred             eEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCC------EeeEEEEEEECCeEEEEE
Confidence            5799999999999999999999999999642    233456789999999999877      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||+.|+|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+. 
T Consensus       134 e~~~g~l~~~l~~~~-~~l~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~Dlkp~NIll~-  188 (348)
T 1u5q_A          134 EYCLGSASDLLEVHK-KPLQEVEIAAVTHGALQG-----------------------LAYLHSHNMIHRDVKAGNILLS-  188 (348)
T ss_dssp             ECCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCSGGGEEEE-
T ss_pred             ecCCCCHHHHHHHhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeeCCCCHHHEEEC-
Confidence            999889999987654 367888888888888888                       9999999999999999999887 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       189 --------------------------------------------------------------------------------  188 (348)
T 1u5q_A          189 --------------------------------------------------------------------------------  188 (348)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeee---cCCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVIL---ELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ..+.+||+|||++..... .....||+.|+|||++.   ...++.++|+|||||++|+|++|..||
T Consensus       189 --------------~~~~~kL~DfG~a~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~  253 (348)
T 1u5q_A          189 --------------EPGLVKLGDFGSASIMAP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPL  253 (348)
T ss_dssp             --------------TTTEEEECCCTTCBSSSS-BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTT
T ss_pred             --------------CCCCEEEeeccCceecCC-CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCC
Confidence                          235799999999875432 34568999999999985   456889999999999999999999999


Q ss_pred             cccCCCce
Q psy2006         315 ARKTKTKY  322 (351)
Q Consensus       315 ~~~~~~~~  322 (351)
                      .+.+..+.
T Consensus       254 ~~~~~~~~  261 (348)
T 1u5q_A          254 FNMNAMSA  261 (348)
T ss_dssp             TTSCHHHH
T ss_pred             CCCChHHH
Confidence            87765443

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=2.6e-34  Score=277.13  Aligned_cols=189  Identities=21%  Similarity=0.320  Sum_probs=154.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC-----CeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH-----GHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~-----~~~   73 (351)
                      +.||+|+||+||+|++..+++.||||++...   ....+.+.+|+++|+.++|+|      |+++++++...     +++
T Consensus        32 ~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------Iv~l~~~~~~~~~~~~~~~  105 (432)
T 3n9x_A           32 HLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDY------IIRLYDLIIPDDLLKFDEL  105 (432)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTT------BCCEEEECCCSCTTTCCCE
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCC------cceEEEEEecCCCCcCCeE
Confidence            5799999999999999999999999999753   234467889999999999877      99999999877     589


Q ss_pred             EEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          74 CIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        74 ~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |+||||++++|.++++...  .+++..++.++.|++.|                       |.|||+.|++|||+|++||
T Consensus       106 ~lv~e~~~~~L~~~~~~~~--~l~~~~~~~i~~qil~a-----------------------L~~LH~~givHrDlkp~NI  160 (432)
T 3n9x_A          106 YIVLEIADSDLKKLFKTPI--FLTEEHIKTILYNLLLG-----------------------ENFIHESGIIHRDLKPANC  160 (432)
T ss_dssp             EEEEECCSEEHHHHHHSSC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGE
T ss_pred             EEEEecCCcCHHHHHhccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCCCCCCCHHHe
Confidence            9999999999999998754  57788888888887777                       9999999999999999998


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       161 Ll~-----------------------------------------------------------------------------  163 (432)
T 3n9x_A          161 LLN-----------------------------------------------------------------------------  163 (432)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EEC-----------------------------------------------------------------------------
Confidence            765                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc-------------------------ccccccccceeeCceeee-
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------------------------HHSTIVSTRHYRAPEVIL-  287 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------------------------~~~~~~gt~~y~aPE~~~-  287 (351)
                                        ..+.+||+|||++.....                         .....+||+.|+|||++. 
T Consensus       164 ------------------~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~  225 (432)
T 3n9x_A          164 ------------------QDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILL  225 (432)
T ss_dssp             ------------------TTCCEEECCCTTCEEC-------------------------------CCCCCTTCCHHHHTT
T ss_pred             ------------------CCCCEEEccCCCcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhc
Confidence                              234577777777754221                         235678899999999864 


Q ss_pred             cCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         288 ELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       288 ~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                      +..++.++|+||+||++|+|++|..||..
T Consensus       226 ~~~~~~~~DiwSlG~il~ell~g~~p~~~  254 (432)
T 3n9x_A          226 QENYTKSIDIWSTGCIFAELLNMLQSHIN  254 (432)
T ss_dssp             CSCCCTHHHHHHHHHHHHHHHTTCTTTCS
T ss_pred             CCCCCcccccchHHHHHHHHHhccccccc
Confidence            56689999999999999999985555543

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=1.8e-34  Score=266.11  Aligned_cols=196  Identities=16%  Similarity=0.220  Sum_probs=158.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|.  .+++.||+|++...   ....+.+.+|+++|++++|+|      |+++++++...+++++|||
T Consensus        43 ~~lG~G~~g~V~~~~--~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~e  114 (309)
T 3p86_A           43 EKIGAGSFGTVHRAE--WHGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPN------IVLFMGAVTQPPNLSIVTE  114 (309)
T ss_dssp             EEEEECSSEEEEEEE--ETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSTTCCEEEEE
T ss_pred             eEeecCCCeEEEEEE--ECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCC------EeeEEEEEEECCceEEEEe
Confidence            579999999999998  47899999999753   233456789999999999877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCC-CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc--ccccccCCCCeE
Q psy2006          79 IL-GLSVFDFLKENNY-LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK--REVRRVRRCDIR  154 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~d~k~~ni~  154 (351)
                      |+ +++|.+++..... ..+++..+..++.|++.|                       |.|||++|  ++|||+|+.||.
T Consensus       115 ~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~~~ivH~Dikp~NIl  171 (309)
T 3p86_A          115 YLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKG-----------------------MNYLHNRNPPIVHRNLKSPNLL  171 (309)
T ss_dssp             CCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHH-----------------------HHHHHTSSSCCCCTTCCGGGEE
T ss_pred             cCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHcCCCCEECCCCChhhEE
Confidence            99 8899999987531 126777777777777777                       99999999  999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       172 l~------------------------------------------------------------------------------  173 (309)
T 3p86_A          172 VD------------------------------------------------------------------------------  173 (309)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             Ee------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                       ....+||+|||++......   .....||+.|+|||++.+..++.++|+|||||++|++++|.
T Consensus       174 -----------------~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~  236 (309)
T 3p86_A          174 -----------------KKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQ  236 (309)
T ss_dssp             -----------------TTCCEEECCCC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCC
T ss_pred             -----------------CCCcEEECCCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCC
Confidence                             2357999999998753322   34567899999999999999999999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      .||.+.+..+..
T Consensus       237 ~Pf~~~~~~~~~  248 (309)
T 3p86_A          237 QPWGNLNPAQVV  248 (309)
T ss_dssp             CTTTTSCHHHHH
T ss_pred             CCCCCCCHHHHH
Confidence            999887765543

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=2e-34  Score=261.58  Aligned_cols=199  Identities=20%  Similarity=0.300  Sum_probs=170.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|.+..+++.||+|++....   ...+.+.+|+.+++.++|+|      |+++++++...+..++|||
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~v~e   85 (284)
T 3kk8_A           12 EELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPN------IVRLHDSIQEESFHYLVFD   85 (284)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEEEEC
T ss_pred             hhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCC------cCeEEEEEEcCCEEEEEEe
Confidence            67999999999999999999999999997532   33456788999999999877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+.+....  .+++..+..++.|++.|                       |.|||++|++|||+|+.|+.+.+
T Consensus        86 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dikp~Nil~~~  140 (284)
T 3kk8_A           86 LVTGGELFEDIVARE--FYSEADASHCIQQILES-----------------------IAYCHSNGIVHRNLKPENLLLAS  140 (284)
T ss_dssp             CCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGEEESS
T ss_pred             cCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcCcCCCCHHHEEEec
Confidence            99 889999988765  57888888888888888                       99999999999999999998862


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                      -|                                                                              
T Consensus       141 ~~------------------------------------------------------------------------------  142 (284)
T 3kk8_A          141 KA------------------------------------------------------------------------------  142 (284)
T ss_dssp             SS------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                    ....+||+|||++.....  ......||+.|+|||.+.+..++.++|+||+||+++++++|..||.
T Consensus       143 --------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~  208 (284)
T 3kk8_A          143 --------------KGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFW  208 (284)
T ss_dssp             --------------TTCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             --------------CCCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCC
Confidence                          124589999999865432  2245678999999999999899999999999999999999999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+.+
T Consensus       209 ~~~~~~~~  216 (284)
T 3kk8_A          209 DEDQHRLY  216 (284)
T ss_dssp             CSSHHHHH
T ss_pred             CCchhHHH
Confidence            87766554

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=8.1e-35  Score=274.83  Aligned_cols=194  Identities=23%  Similarity=0.449  Sum_probs=148.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC------Ce
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH------GH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~------~~   72 (351)
                      +.||+|+||+||+|.+..+++.||||++...   ....+.+.+|+++|+.++|+|      |++++++|...      ..
T Consensus        35 ~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------Iv~~~~~~~~~~~~~~~~~  108 (367)
T 2fst_X           35 SPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHEN------VIGLLDVFTPARSLEEFND  108 (367)
T ss_dssp             EECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTT------BCCCSEEECSCSSGGGCCC
T ss_pred             eEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCC------CCcEEEEEecCCccccCCe
Confidence            6799999999999999999999999999653   234466789999999999877      99999999765      57


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +|+|||+++++|.++++..   .+++..++.++.|++.|                       |.|||+.|++|||+|+.|
T Consensus       109 ~~lv~e~~~~~L~~~~~~~---~l~~~~~~~i~~qi~~a-----------------------L~~LH~~givH~Dlkp~N  162 (367)
T 2fst_X          109 VYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRG-----------------------LKYIHSADIIHRDLKPSN  162 (367)
T ss_dssp             CEEEEECCCEECC-----C---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGG
T ss_pred             EEEEecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeCCCCHhh
Confidence            8999999999999998763   57888888888888887                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       163 Ill~----------------------------------------------------------------------------  166 (367)
T 2fst_X          163 LAVN----------------------------------------------------------------------------  166 (367)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEEC----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                         ..+.+||+|||++...........||+.|+|||++.+ ..++.++|+||+||++++|++|.
T Consensus       167 -------------------~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~  227 (367)
T 2fst_X          167 -------------------EDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGR  227 (367)
T ss_dssp             -------------------TTCCEEECC---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------CCCCEEEeeccccccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCC
Confidence                               2357999999999876555666789999999999887 67899999999999999999999


Q ss_pred             ccccccCCCce
Q psy2006         312 TLMARKTKTKY  322 (351)
Q Consensus       312 ~pf~~~~~~~~  322 (351)
                      .||.+.+..+.
T Consensus       228 ~pf~~~~~~~~  238 (367)
T 2fst_X          228 TLFPGTDHIDQ  238 (367)
T ss_dssp             CSCCCSSHHHH
T ss_pred             CCCCCCCHHHH
Confidence            99988775443

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=8.2e-35  Score=270.31  Aligned_cols=201  Identities=18%  Similarity=0.217  Sum_probs=168.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCC-CCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGE-KDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h-~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|.+..+++.||+|++....   .....+.+|+.+++.+.+ ++      |++++++|...+.+++||
T Consensus        35 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~------iv~~~~~~~~~~~~~lv~  108 (327)
T 3lm5_A           35 KELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPR------VINLHEVYENTSEIILIL  108 (327)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTT------BCCEEEEEECSSEEEEEE
T ss_pred             ceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCC------EEEEEEEEEeCCeEEEEE
Confidence            57999999999999999999999999997532   234678899999999964 55      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++.......+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.
T Consensus       109 e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~-----------------------L~~LH~~givH~Dikp~NIl~~  165 (327)
T 3lm5_A          109 EYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEG-----------------------VYYLHQNNIVHLDLKPQNILLS  165 (327)
T ss_dssp             ECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGEEES
T ss_pred             EecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCcCChHHEEEe
Confidence            999 8899999876654568888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +-                                                                              
T Consensus       166 ~~------------------------------------------------------------------------------  167 (327)
T 3lm5_A          166 SI------------------------------------------------------------------------------  167 (327)
T ss_dssp             CB------------------------------------------------------------------------------
T ss_pred             cC------------------------------------------------------------------------------
Confidence            10                                                                              


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    .....+||+|||++.....  ......||+.|+|||++.+.+++.++|+|||||++|+|++|..||
T Consensus       168 --------------~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf  233 (327)
T 3lm5_A          168 --------------YPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPF  233 (327)
T ss_dssp             --------------TTBCCEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSS
T ss_pred             --------------CCCCcEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCC
Confidence                          0135799999999876432  234568999999999998889999999999999999999999999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      .+.+..+.+
T Consensus       234 ~~~~~~~~~  242 (327)
T 3lm5_A          234 VGEDNQETY  242 (327)
T ss_dssp             CCSSHHHHH
T ss_pred             CCCCchHHH
Confidence            887766554

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=2e-34  Score=271.73  Aligned_cols=207  Identities=29%  Similarity=0.479  Sum_probs=171.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCC-----CCcceeeeeeeEeeCC----e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPN-----GRHLCVKMLDWFDYHG----H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~-----g~~~Iv~l~~~f~~~~----~   72 (351)
                      ++||+|+||+||+|.+..+++.||+|++.......+.+.+|+.+++.+.+....     ++.||++++++|...+    +
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  104 (373)
T 1q8y_A           25 RKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVH  104 (373)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEE
T ss_pred             EeeeecCCeEEEEEEecCCCcEEEEEEecCCccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCce
Confidence            679999999999999999999999999987666667788999999999743210     2334999999998765    8


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~  151 (351)
                      +++|||+++++|.+++.......+++..++.++.|++.|                       |.|||++ |++|||+|+.
T Consensus       105 ~~lv~e~~~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~~lH~~~~ivH~Dikp~  161 (373)
T 1q8y_A          105 VVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLG-----------------------LDYMHRRCGIIHTDIKPE  161 (373)
T ss_dssp             EEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCEECSCCSGG
T ss_pred             EEEEEecCCCCHHHHHHHhhccCCcHHHHHHHHHHHHHH-----------------------HHHHHhcCCEEecCCChH
Confidence            999999999999999998765678888888888888888                       9999998 9999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.+..-|-                                                                       
T Consensus       162 NIll~~~~~-----------------------------------------------------------------------  170 (373)
T 1q8y_A          162 NVLMEIVDS-----------------------------------------------------------------------  170 (373)
T ss_dssp             GEEEEEEET-----------------------------------------------------------------------
T ss_pred             HeEEeccCC-----------------------------------------------------------------------
Confidence            999862110                                                                       


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                        ......+||+|||++...........||+.|+|||++.+..++.++|+|||||++|+|++|.
T Consensus       171 ------------------~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~  232 (373)
T 1q8y_A          171 ------------------PENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGD  232 (373)
T ss_dssp             ------------------TTTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------CcCcceEEEcccccccccCCCCCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCC
Confidence                              00235799999999987666666778999999999999999999999999999999999999


Q ss_pred             ccccccCCC
Q psy2006         312 TLMARKTKT  320 (351)
Q Consensus       312 ~pf~~~~~~  320 (351)
                      .||.+.+..
T Consensus       233 ~pf~~~~~~  241 (373)
T 1q8y_A          233 FLFEPDEGH  241 (373)
T ss_dssp             CCC------
T ss_pred             CCCCCCccc
Confidence            999876643

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=1.6e-34  Score=274.98  Aligned_cols=192  Identities=18%  Similarity=0.271  Sum_probs=160.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|.+. +++.||||++...   ....+.+.+|+++|+.+.|.+++    |+++++++...+.+|||||
T Consensus        62 ~~LG~G~fg~Vy~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~----iv~~~~~~~~~~~~~lv~E  136 (390)
T 2zmd_A           62 KQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDK----IIRLYDYEITDQYIYMVME  136 (390)
T ss_dssp             EEEECCSSEEEEEEECT-TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTT----BCCEEEEEECSSEEEEEEE
T ss_pred             EEEccCCCeEEEEEEcC-CCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCe----EEEEEEEEecCCEEEEEEe
Confidence            57999999999999985 4999999999653   23446788999999999864444    9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      +.+++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.  
T Consensus       137 ~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~a-----------------------L~~lH~~~ivHrDlkp~NIll~--  189 (390)
T 2zmd_A          137 CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEA-----------------------VHTIHQHGIVHSDLKPANFLIV--  189 (390)
T ss_dssp             CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHH-----------------------HHHHHTTTCCCCCCCGGGEEES--
T ss_pred             cCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecCCCHHHEEEE--
Confidence            77999999998865  57777788888888887                       9999999999999999999875  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       190 --------------------------------------------------------------------------------  189 (390)
T 2zmd_A          190 --------------------------------------------------------------------------------  189 (390)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeec-----------CCCCCccceeeeee
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILE-----------LGWAQPCDVWSIGC  302 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DiwslG~  302 (351)
                                    ...+||+|||++.....     .....+||+.|+|||++.+           ..++.++|||||||
T Consensus       190 --------------~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGv  255 (390)
T 2zmd_A          190 --------------DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGC  255 (390)
T ss_dssp             --------------SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHH
T ss_pred             --------------CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHH
Confidence                          13589999999875322     1245679999999999865           36788999999999


Q ss_pred             eeEeeccccccccccCC
Q psy2006         303 IIFELYLGITLMARKTK  319 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~~  319 (351)
                      ++|+|++|..||.....
T Consensus       256 il~ell~G~~Pf~~~~~  272 (390)
T 2zmd_A          256 ILYYMTYGKTPFQQIIN  272 (390)
T ss_dssp             HHHHHHHSSCTTTTCCC
T ss_pred             HHHHHHHCCCcchhhhH
Confidence            99999999999977543

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=5.1e-34  Score=269.61  Aligned_cols=198  Identities=18%  Similarity=0.275  Sum_probs=161.6

Q ss_pred             ccccCcccceEEEEEEee-------cCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYE-------VDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-------~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      +.||+|+||+||+|.+..       ++..||+|++...  ....+.+.+|+.+|+.+ +|+|      |++++++|...+
T Consensus        87 ~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpn------Iv~~~~~~~~~~  160 (370)
T 2psq_A           87 KPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN------IINLLGACTQDG  160 (370)
T ss_dssp             EEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTT------BCCEEEEECSSS
T ss_pred             eEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCC------EeeEEEEEccCC
Confidence            579999999999999752       4568999999753  23446788999999999 6777      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhh
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD  136 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~  136 (351)
                      .+|+||||+ +++|.+++.....              ..+++..+..++.|++.|                       |.
T Consensus       161 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~  217 (370)
T 2psq_A          161 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARG-----------------------ME  217 (370)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHH-----------------------HH
T ss_pred             CEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHH-----------------------HH
Confidence            999999999 8899999987642              124444555555555555                       99


Q ss_pred             ccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhh
Q psy2006         137 YNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEAL  216 (351)
Q Consensus       137 ~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l  216 (351)
                      |||++|++|||+|+.||.+.                                                            
T Consensus       218 ~LH~~~ivHrDlkp~NIll~------------------------------------------------------------  237 (370)
T 2psq_A          218 YLASQKCIHRDLAARNVLVT------------------------------------------------------------  237 (370)
T ss_dssp             HHHHTTEECSCCCGGGEEEC------------------------------------------------------------
T ss_pred             HHHhCCeeccccchhhEEEC------------------------------------------------------------
Confidence            99999999999999999886                                                            


Q ss_pred             cCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCC
Q psy2006         217 RHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGW  291 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~  291 (351)
                                                         ..+.+||+|||++.....     ......+|+.|+|||++.+..+
T Consensus       238 -----------------------------------~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  282 (370)
T 2psq_A          238 -----------------------------------ENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVY  282 (370)
T ss_dssp             -----------------------------------TTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCC
T ss_pred             -----------------------------------CCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCC
Confidence                                               235799999999875322     1234567789999999999999


Q ss_pred             CCccceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         292 AQPCDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       292 ~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +.++|+|||||++|+|+| |..||.+.+..+.+
T Consensus       283 ~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~  315 (370)
T 2psq_A          283 THQSDVWSFGVLMWEIFTLGGSPYPGIPVEELF  315 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHH
Confidence            999999999999999999 99999987766655

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=100.00  E-value=2.6e-34  Score=266.35  Aligned_cols=191  Identities=19%  Similarity=0.197  Sum_probs=160.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC----eEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG----HMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~----~~~lV~   77 (351)
                      ++||+|+||+||+|++  .++.||||++............|+.+|+.++|+|      |+++++++....    ++|+||
T Consensus        30 ~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~~~~~lv~  101 (322)
T 3soc_A           30 EVKARGRFGCVWKAQL--LNEYVAVKIFPIQDKQSWQNEYEVYSLPGMKHEN------ILQFIGAEKRGTSVDVDLWLIT  101 (322)
T ss_dssp             EEEECSTTCEEEEEEE--TTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTT------BCCEEEEEEEECSSSEEEEEEE
T ss_pred             heecccCceEEEEEEE--CCCEEEEEEeecCchHHHHHHHHHHHHhcCCCCC------chhhcceeccCCCCCceEEEEE
Confidence            6799999999999985  5899999999876555566677999999998887      999999998854    589999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc----------ccccc
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK----------KREVR  146 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~----------~i~h~  146 (351)
                      ||+ +++|.++++..   .+++..+..++.|++.|                       |.|||+.          +++||
T Consensus       102 e~~~~g~L~~~l~~~---~~~~~~~~~i~~qi~~a-----------------------l~~LH~~~~~l~~~~~~~ivH~  155 (322)
T 3soc_A          102 AFHEKGSLSDFLKAN---VVSWNELCHIAETMARG-----------------------LAYLHEDIPGLKDGHKPAISHR  155 (322)
T ss_dssp             ECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHH-----------------------HHHHTCCEEEETTEEECEEECS
T ss_pred             ecCCCCCHHHHHHhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHhhccccccccCCCEEeC
Confidence            999 88999999875   37888888888888888                       9999998          99999


Q ss_pred             ccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         147 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      |+|+.||.+.                                                                      
T Consensus       156 Dlkp~Nill~----------------------------------------------------------------------  165 (322)
T 3soc_A          156 DIKSKNVLLK----------------------------------------------------------------------  165 (322)
T ss_dssp             CCSGGGEEEC----------------------------------------------------------------------
T ss_pred             CCChHhEEEC----------------------------------------------------------------------
Confidence            9999999886                                                                      


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeec-----CCCCCccc
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILE-----LGWAQPCD  296 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~-----~~~~~~~D  296 (351)
                                               ....+||+|||++.....     ......||+.|+|||++.+     ..++.++|
T Consensus       166 -------------------------~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~D  220 (322)
T 3soc_A          166 -------------------------NNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRID  220 (322)
T ss_dssp             -------------------------TTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHH
T ss_pred             -------------------------CCCeEEEccCCcccccccccCccccccCccCccccCHhhcccccccCcCCCccch
Confidence                                     235699999999865322     1233678999999999876     34567889


Q ss_pred             eeeeeeeeEeeccccccccccCCCc
Q psy2006         297 VWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       297 iwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                      ||||||++|+|+||..||.+.+...
T Consensus       221 iwslG~il~el~tg~~pf~~~~~~~  245 (322)
T 3soc_A          221 MYAMGLVLWELASRCTAADGPVDEY  245 (322)
T ss_dssp             HHHHHHHHHHHHTTBTTSSSCCCCC
T ss_pred             hHHHHHHHHHHHhCCCCCCCCcchh
Confidence            9999999999999999998866543

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=275.11  Aligned_cols=197  Identities=21%  Similarity=0.356  Sum_probs=150.1

Q ss_pred             ccccCcccceEEEEEEe--ecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee--CCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVY--EVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY--HGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~--~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~--~~~~~lV~   77 (351)
                      ++||+|+||+||+|+++  .+++.||+|++... .....+.+|+.+|+.++|+|      |++++++|..  ..++|+||
T Consensus        27 ~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~-~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~~~lv~   99 (405)
T 3rgf_A           27 CKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT-GISMSACREIALLRELKHPN------VISLQKVFLSHADRKVWLLF   99 (405)
T ss_dssp             CCCC-----EEEEEEESSSSCCCCEEEEECSSS-SCCHHHHHHHHHHHHCCCTT------BCCCCEEEEETTTTEEEEEE
T ss_pred             cEeeecCCeEEEEEEEccCCCCeEEEEEEECCC-CCCHHHHHHHHHHHhcCCCC------eeeEeeEEecCCCCeEEEEE
Confidence            47999999999999965  57899999999753 23456789999999999887      9999999954  66999999


Q ss_pred             eccCCCHHHHHHhcC-------CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          78 EILGLSVFDFLKENN-------YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        78 E~~g~sL~~~l~~~~-------~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      ||++++|.+++....       ...+++..++.++.|++.|                       |.|||++|++|||+|+
T Consensus       100 e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~a-----------------------l~~LH~~~ivH~Dlkp  156 (405)
T 3rgf_A          100 DYAEHDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDG-----------------------IHYLHANWVLHRDLKP  156 (405)
T ss_dssp             ECCSEEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCG
T ss_pred             eCCCCCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEeCCCcCH
Confidence            999989999887432       1236667777777777776                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .||.+..-+                                                                       
T Consensus       157 ~NIll~~~~-----------------------------------------------------------------------  165 (405)
T 3rgf_A          157 ANILVMGEG-----------------------------------------------------------------------  165 (405)
T ss_dssp             GGEEECCSS-----------------------------------------------------------------------
T ss_pred             HHeEEecCC-----------------------------------------------------------------------
Confidence            999985100                                                                       


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecC-CCCCccceeeeeee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCI  303 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~  303 (351)
                                          .....+||+|||++.....      .....+||+.|+|||++.+. .++.++|||||||+
T Consensus       166 --------------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~i  225 (405)
T 3rgf_A          166 --------------------PERGRVKIADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCI  225 (405)
T ss_dssp             --------------------TTTTCEEECCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHH
T ss_pred             --------------------CCCCcEEEEECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHH
Confidence                                0245799999999875332      23457889999999999874 47999999999999


Q ss_pred             eEeeccccccccccCC
Q psy2006         304 IFELYLGITLMARKTK  319 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~  319 (351)
                      +|+|++|.+||.+.+.
T Consensus       226 l~ell~g~~pf~~~~~  241 (405)
T 3rgf_A          226 FAELLTSEPIFHCRQE  241 (405)
T ss_dssp             HHHHHHSSCTTCCCC-
T ss_pred             HHHHHhCCCCCCCccc
Confidence            9999999999987654

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=2.2e-34  Score=264.34  Aligned_cols=199  Identities=25%  Similarity=0.343  Sum_probs=168.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+||+||+|.+..+++.||+|++.... ...+.+.+|+.+++.+.|+|      |+++++++...++.|+||||+
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~   88 (304)
T 2jam_A           15 EVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHEN------IVTLEDIYESTTHYYLVMQLV   88 (304)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEEEECCC
T ss_pred             eeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCC------eeehhhhcccCCEEEEEEEcC
Confidence            57999999999999998899999999997643 23456789999999999877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++....  .+++..+..++.|++.|                       |.|||++|++|+|+|+.||.+.+- 
T Consensus        89 ~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dikp~NIl~~~~-  142 (304)
T 2jam_A           89 SGGELFDRILERG--VYTEKDASLVIQQVLSA-----------------------VKYLHENGIVHRDLKPENLLYLTP-  142 (304)
T ss_dssp             CSCBHHHHHHHHS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCSCCGGGCEESSS-
T ss_pred             CCccHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCCHHHEEEecC-
Confidence             889999998765  57788888888888888                       999999999999999999987410 


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (304)
T 2jam_A          143 --------------------------------------------------------------------------------  142 (304)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc-ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccC
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE-HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKT  318 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~  318 (351)
                                 .....++|+|||++..... ......||+.|+|||.+.+..++.++|+||+||++|++++|..||.+.+
T Consensus       143 -----------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~  211 (304)
T 2jam_A          143 -----------EENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEET  211 (304)
T ss_dssp             -----------STTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSC
T ss_pred             -----------CCCCCEEEccCCcceecCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCC
Confidence                       0235799999999875432 3344678999999999998889999999999999999999999998877


Q ss_pred             CCcee
Q psy2006         319 KTKYF  323 (351)
Q Consensus       319 ~~~~~  323 (351)
                      ..+.+
T Consensus       212 ~~~~~  216 (304)
T 2jam_A          212 ESKLF  216 (304)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65544

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=100.00  E-value=2.5e-34  Score=259.25  Aligned_cols=196  Identities=16%  Similarity=0.235  Sum_probs=168.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|.+. +++.||+|++.......+.+.+|++++++++|+|      |+++++++...+..|+||||+ 
T Consensus        16 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~~   88 (269)
T 4hcu_A           16 QEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK------LVQLYGVCLEQAPICLVFEFME   88 (269)
T ss_dssp             EEEEECSSCEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTT------BCCEEEEECSSSSEEEEEECCT
T ss_pred             heecCCCccEEEEEEec-CCCeEEEEEecccccCHHHHHHHHHHHHhCCCCC------EeeEEEEEecCCceEEEEEeCC
Confidence            67999999999999975 6788999999876555677899999999999877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..+++..+..++.|++.+                       |.|||++|++|||+|+.|+.+.    
T Consensus        89 ~~~L~~~l~~~~-~~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~i~H~dikp~Nil~~----  140 (269)
T 4hcu_A           89 HGCLSDYLRTQR-GLFAAETLLGMCLDVCEG-----------------------MAYLEEACVIHRDLAARNCLVG----  140 (269)
T ss_dssp             TCBHHHHHHTTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEEC----
T ss_pred             CCcHHHHHHhcC-cccCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCcchheEEEc----
Confidence            889999997654 357888888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (269)
T 4hcu_A          141 --------------------------------------------------------------------------------  140 (269)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....++|+|||++.....    ......+|+.|+|||.+.+..++.++|+||+||+++++++ |..||.
T Consensus       141 -----------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~  209 (269)
T 4hcu_A          141 -----------ENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE  209 (269)
T ss_dssp             -----------GGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             -----------CCCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCC
Confidence                       235699999999875322    2234556778999999988999999999999999999999 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      ..+..+..
T Consensus       210 ~~~~~~~~  217 (269)
T 4hcu_A          210 NRSNSEVV  217 (269)
T ss_dssp             TCCHHHHH
T ss_pred             CCCHHHHH
Confidence            87766554

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=6.2e-34  Score=262.50  Aligned_cols=197  Identities=19%  Similarity=0.311  Sum_probs=161.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||+|+||+||+|.+..+++.||||++.... ...+.+.+|+++|.++ +|+|      |++++++|...+++|+||||
T Consensus        19 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~------i~~~~~~~~~~~~~~lv~e~   92 (316)
T 2ac3_A           19 DVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRN------VLELIEFFEEEDRFYLVFEK   92 (316)
T ss_dssp             CCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTT------BCCEEEEEEETTEEEEEEEC
T ss_pred             ceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCC------eeeEEEEEeeCCEEEEEEEc
Confidence            46999999999999999999999999997543 3356788999999985 5666      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.+-
T Consensus        93 ~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~ivH~dlkp~Nil~~~~  147 (316)
T 2ac3_A           93 MRGGSILSHIHKRR--HFNELEASVVVQDVASA-----------------------LDFLHNKGIAHRDLKPENILCEHP  147 (316)
T ss_dssp             CTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGGEEESCS
T ss_pred             CCCCcHHHHHhccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCceeCCCCHHHEEEccC
Confidence            9 899999998764  57888888888888888                       999999999999999999988621


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                      |                                                                               
T Consensus       148 ~-------------------------------------------------------------------------------  148 (316)
T 2ac3_A          148 N-------------------------------------------------------------------------------  148 (316)
T ss_dssp             S-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            0                                                                               


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec----------cccccccccceeeCceeeec-----CCCCCccceeeeeee
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD----------EHHSTIVSTRHYRAPEVILE-----LGWAQPCDVWSIGCI  303 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~----------~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DiwslG~~  303 (351)
                                   ....+||+|||++....          .......||+.|+|||++.+     ..++.++|+|||||+
T Consensus       149 -------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~i  215 (316)
T 2ac3_A          149 -------------QVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVI  215 (316)
T ss_dssp             -------------SSCSEEECCTTCCC-------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHH
T ss_pred             -------------CcCceEEEEccCccccccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHH
Confidence                         12348999999876421          11234568999999999875     457889999999999


Q ss_pred             eEeeccccccccccCCCc
Q psy2006         304 IFELYLGITLMARKTKTK  321 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~~~  321 (351)
                      +|+|++|..||.+.+..+
T Consensus       216 l~~l~~g~~pf~~~~~~~  233 (316)
T 2ac3_A          216 LYILLSGYPPFVGRCGSD  233 (316)
T ss_dssp             HHHHHHSSCSCCCCCCSC
T ss_pred             HHHHHHCCCCCccccccc
Confidence            999999999998876543

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.1e-34  Score=270.78  Aligned_cols=223  Identities=16%  Similarity=0.242  Sum_probs=159.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++||+|+||+||+|.+..+++.||+|++....      ...+.+.+|+++|+.++|+|      |++++++|...++.|+
T Consensus        32 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~l  105 (345)
T 3hko_A           32 GAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPN------IARLYEVYEDEQYICL  105 (345)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEEE
T ss_pred             ceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCC------cceeehhhccCCeEEE
Confidence            57999999999999999999999999997532      33467889999999999877      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCCCC-------------CchHHHHHHH--HHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccc
Q psy2006          76 AFEIL-GLSVFDFLKENNYLP-------------YSLDQVRHMS--YQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN  139 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~-------------~~~~~~~~~~--~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH  139 (351)
                      ||||+ +++|.+++.......             .+........  ..+....+.....+++..+..++.|++.||+|||
T Consensus       106 v~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH  185 (345)
T 3hko_A          106 VMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLH  185 (345)
T ss_dssp             EEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            99999 999999986321000             0000000000  0000000000001223334444445555599999


Q ss_pred             cccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCC
Q psy2006         140 KKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHP  219 (351)
Q Consensus       140 ~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~  219 (351)
                      +++++|||+|+.||.+.+-                                                             
T Consensus       186 ~~~ivH~Dlkp~NIll~~~-------------------------------------------------------------  204 (345)
T 3hko_A          186 NQGICHRDIKPENFLFSTN-------------------------------------------------------------  204 (345)
T ss_dssp             HTTEECCCCCGGGEEESCS-------------------------------------------------------------
T ss_pred             HCCccccCCChhhEEEecC-------------------------------------------------------------
Confidence            9999999999999988610                                                             


Q ss_pred             CCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeec--CC
Q psy2006         220 FFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILE--LG  290 (351)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~--~~  290 (351)
                                                      ....+||+|||++.....       ......||+.|+|||++.+  ..
T Consensus       205 --------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  252 (345)
T 3hko_A          205 --------------------------------KSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNES  252 (345)
T ss_dssp             --------------------------------SSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSC
T ss_pred             --------------------------------CCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCC
Confidence                                            123699999999875321       2345678999999999875  56


Q ss_pred             CCCccceeeeeeeeEeeccccccccccCCCcee
Q psy2006         291 WAQPCDVWSIGCIIFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       291 ~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~~~  323 (351)
                      ++.++|+|||||++|+|++|..||.+.+..+..
T Consensus       253 ~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~  285 (345)
T 3hko_A          253 YGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTI  285 (345)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHH
Confidence            789999999999999999999999887766554

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=9.8e-35  Score=267.75  Aligned_cols=196  Identities=17%  Similarity=0.244  Sum_probs=161.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC----eE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG----HM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~----~~   73 (351)
                      +.||+|+||+||+|++..+++.||+|++....    .....+.+|+.+++.++|+|      |+++++++....    ..
T Consensus        18 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~~~~   91 (311)
T 3ork_A           18 EILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPA------IVAVYDTGEAETPAGPLP   91 (311)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTT------BCCEEEEEEEEETTEEEE
T ss_pred             EEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCC------cceEEEeeeccCCCCccc
Confidence            57999999999999999999999999997532    23356788999999998877      999999998765    45


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      |+||||+ +++|.+++....  .+++..+..++.|++.+                       |.|||++|++|||+|+.|
T Consensus        92 ~lv~e~~~g~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~dlkp~N  146 (311)
T 3ork_A           92 YIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQA-----------------------LNFSHQNGIIHRDVKPAN  146 (311)
T ss_dssp             EEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGG
T ss_pred             EEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCCcCCCCHHH
Confidence            9999999 899999998765  57888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       147 il~~----------------------------------------------------------------------------  150 (311)
T 3ork_A          147 IMIS----------------------------------------------------------------------------  150 (311)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            9887                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                         ....+||+|||++.....      ......||+.|+|||++.+..++.++|+|||||++|+
T Consensus       151 -------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~  211 (311)
T 3ork_A          151 -------------------ATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYE  211 (311)
T ss_dssp             -------------------TTSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred             -------------------CCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHH
Confidence                               235689999999865322      1234568999999999998899999999999999999


Q ss_pred             eccccccccccCCCcee
Q psy2006         307 LYLGITLMARKTKTKYF  323 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~~  323 (351)
                      |++|..||.+.+..+..
T Consensus       212 ll~g~~pf~~~~~~~~~  228 (311)
T 3ork_A          212 VLTGEPPFTGDSPVSVA  228 (311)
T ss_dssp             HHHSSCSCCCSSHHHHH
T ss_pred             HHhCCCCCCCCChHHHH
Confidence            99999999887765543

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=4.4e-34  Score=267.69  Aligned_cols=197  Identities=21%  Similarity=0.358  Sum_probs=165.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee--------C
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY--------H   70 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~--------~   70 (351)
                      ++||+|+||+||+|+++.+++.||+|++....   .....+.+|+++|+.++|+|      |+++++++..        .
T Consensus        23 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~   96 (351)
T 3mi9_A           23 AKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN------VVNLIEICRTKASPYNRCK   96 (351)
T ss_dssp             EECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTT------BCCEEEEEEEC--------
T ss_pred             EEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCC------cccHhheeeccccccccCC
Confidence            67999999999999999999999999996532   23456778999999999877      9999999987        4


Q ss_pred             CeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          71 GHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        71 ~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      +++|+||||++++|.+.+.... ..+++..++.++.|++.|                       |.|||++|++|||+|+
T Consensus        97 ~~~~lv~e~~~~~l~~~l~~~~-~~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~ivH~Dlkp  152 (351)
T 3mi9_A           97 GSIYLVFDFCEHDLAGLLSNVL-VKFTLSEIKRVMQMLLNG-----------------------LYYIHRNKILHRDMKA  152 (351)
T ss_dssp             CEEEEEEECCSEEHHHHHHCTT-SCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSG
T ss_pred             ceEEEEEeccCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeCCCCCH
Confidence            5799999999889999887654 357888888888888888                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .||.+.                                                                          
T Consensus       153 ~NIl~~--------------------------------------------------------------------------  158 (351)
T 3mi9_A          153 ANVLIT--------------------------------------------------------------------------  158 (351)
T ss_dssp             GGEEEC--------------------------------------------------------------------------
T ss_pred             HHEEEc--------------------------------------------------------------------------
Confidence            999886                                                                          


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceec-------cccccccccceeeCceeeec-CCCCCccceeeeee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-------EHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGC  302 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-------~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~  302 (351)
                                           ..+.+||+|||++....       .......||+.|+|||++.+ ..++.++|+|||||
T Consensus       159 ---------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~  217 (351)
T 3mi9_A          159 ---------------------RDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGC  217 (351)
T ss_dssp             ---------------------TTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHH
T ss_pred             ---------------------CCCCEEEccchhcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHH
Confidence                                 23569999999986532       12244678999999999876 45799999999999


Q ss_pred             eeEeeccccccccccCCCcee
Q psy2006         303 IIFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~~~~~~  323 (351)
                      ++|+|++|..||.+.+..+.+
T Consensus       218 il~ell~g~~pf~~~~~~~~~  238 (351)
T 3mi9_A          218 IMAEMWTRSPIMQGNTEQHQL  238 (351)
T ss_dssp             HHHHHHHSSCSCCCSSHHHHH
T ss_pred             HHHHHHhCCCCCCCCChHHHH
Confidence            999999999999987765543

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=2.5e-34  Score=272.78  Aligned_cols=195  Identities=24%  Similarity=0.359  Sum_probs=161.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee------------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY------------   69 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~------------   69 (351)
                      ++||+|+||+||+|.+..+++.||||++....   ....+|+++|+.++|+|      |++++++|..            
T Consensus        13 ~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~---~~~~~E~~il~~l~hpn------Iv~l~~~~~~~~~~~~~~~~~~   83 (383)
T 3eb0_A           13 KTLGTGSFGIVCEVFDIESGKRFALKKVLQDP---RYKNRELDIMKVLDHVN------IIKLVDYFYTTGDEEPKPPQPP   83 (383)
T ss_dssp             EEEECC-CEEEEEEEETTTCCEEEEEEEECCT---TSCCHHHHHHTTCCCTT------BCCEEEEEEEC-----------
T ss_pred             EEEEeccCEEEEEEEECCCCCEEEEEEEecCc---chHHHHHHHHHHcCCCC------ccchhheeeecCcccccccccc
Confidence            67999999999999999999999999997543   22347999999999887      9999999954            


Q ss_pred             --------------------------CCeEEEEEeccCCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCch
Q psy2006          70 --------------------------HGHMCIAFEILGLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSL  121 (351)
Q Consensus        70 --------------------------~~~~~lV~E~~g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~  121 (351)
                                                ..++++||||++++|.+.+...  ....+++..++.++.|++.|          
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~a----------  153 (383)
T 3eb0_A           84 DDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPDTLHKVLKSFIRSGRSIPMNLISIYIYQLFRA----------  153 (383)
T ss_dssp             --------------------------CCEEEEEECCCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH----------
T ss_pred             cccccccccccccccccccccccCCCceEEEEEEecCCccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH----------
Confidence                                      3359999999988988888752  33467888888888888888          


Q ss_pred             HHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHh
Q psy2006         122 DQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKM  201 (351)
Q Consensus       122 ~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~  201 (351)
                                   |.|||++|++|||+|+.|+.+..                                            
T Consensus       154 -------------L~~LH~~gi~H~Dikp~Nil~~~--------------------------------------------  176 (383)
T 3eb0_A          154 -------------VGFIHSLGICHRDIKPQNLLVNS--------------------------------------------  176 (383)
T ss_dssp             -------------HHHHHTTTEECSCCCGGGEEEET--------------------------------------------
T ss_pred             -------------HHHHHHCcCccCccCHHHEEEcC--------------------------------------------
Confidence                         99999999999999999998850                                            


Q ss_pred             hccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCccee--ccccccccccce
Q psy2006         202 LEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRH  279 (351)
Q Consensus       202 L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~  279 (351)
                                                                        ..+.+||+|||++...  ........||+.
T Consensus       177 --------------------------------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~  206 (383)
T 3eb0_A          177 --------------------------------------------------KDNTLKLCDFGSAKKLIPSEPSVAYICSRF  206 (383)
T ss_dssp             --------------------------------------------------TTTEEEECCCTTCEECCTTSCCCCCCCCSS
T ss_pred             --------------------------------------------------CCCcEEEEECCCCcccCCCCCCcCcccCCC
Confidence                                                              1356999999999753  333455788999


Q ss_pred             eeCceeeecC-CCCCccceeeeeeeeEeeccccccccccCCCce
Q psy2006         280 YRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITLMARKTKTKY  322 (351)
Q Consensus       280 y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~~  322 (351)
                      |+|||++.+. .++.++|+||+||++|+|++|..||.+.+..+.
T Consensus       207 y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~  250 (383)
T 3eb0_A          207 YRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQ  250 (383)
T ss_dssp             CCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             ccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHH
Confidence            9999998875 489999999999999999999999998775554

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=100.00  E-value=6.5e-34  Score=259.86  Aligned_cols=197  Identities=15%  Similarity=0.126  Sum_probs=166.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+||+||+|.+..+++.||+|++... ...+.+.+|+.+++.+ .|++      |+.+++++....+.|+||||+
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~e~~~~~~l~~~~~------i~~~~~~~~~~~~~~lv~e~~   88 (298)
T 1csn_A           16 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR-SDAPQLRDEYRTYKLLAGCTG------IPNVYYFGQEGLHNVLVIDLL   88 (298)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEECC-TTSCCHHHHHHHHHHTTTCTT------CCCEEEEEEETTEEEEEEECC
T ss_pred             EEEeecCCEEEEEEEECCCCcEEEEEEeccC-CccHHHHHHHHHHHHHhcCCC------CCeEEeecCCCceeEEEEEec
Confidence            5799999999999999999999999999753 2345678899999999 4555      999999999999999999999


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+..-|.
T Consensus        89 ~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~ivH~Dlkp~NIl~~~~~~  144 (298)
T 1csn_A           89 GPSLEDLLDLCG-RKFSVKTVAMAAKQMLAR-----------------------VQSIHEKSLVYRDIKPDNFLIGRPNS  144 (298)
T ss_dssp             CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECCCCCGGGEEECCSSS
T ss_pred             CCCHHHHHHHhc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEecCCCCHHHEEeccCCC
Confidence            999999998764 357888888888888888                       99999999999999999999862110


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (298)
T 1csn_A          145 --------------------------------------------------------------------------------  144 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc----------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                .....++|+|||++.....          ......||+.|+|||++.+..++.++|+|||||++|++++|
T Consensus       145 ----------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g  214 (298)
T 1csn_A          145 ----------KNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRG  214 (298)
T ss_dssp             ----------TTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ----------CCCCeEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcC
Confidence                      0124599999999875322          12456789999999999888899999999999999999999


Q ss_pred             cccccccCC
Q psy2006         311 ITLMARKTK  319 (351)
Q Consensus       311 ~~pf~~~~~  319 (351)
                      ..||.+.+.
T Consensus       215 ~~pf~~~~~  223 (298)
T 1csn_A          215 SLPWQGLKA  223 (298)
T ss_dssp             SCTTSSCCS
T ss_pred             CCCcchhhc
Confidence            999988553

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=100.00  E-value=3.7e-34  Score=280.63  Aligned_cols=198  Identities=20%  Similarity=0.229  Sum_probs=171.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|.+..+++.||||++.......+.+.+|+++|+.++|+|      |+++++++...+.+||||||+ 
T Consensus       226 ~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~l~~~~~~~~~~~lv~E~~~  299 (495)
T 1opk_A          226 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN------LVQLLGVCTREPPFYIITEFMT  299 (495)
T ss_dssp             EESGGGTTSSEEEEEEGGGTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSCEEEEECCT
T ss_pred             eEecCCCCeEEEEEEEcCCCeEEEEEEecCcccchHHHHHHHHHHHhcCCCC------EeeEEEEEecCCcEEEEEEccC
Confidence            5799999999999999888999999999876555678899999999999887      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.++++......+++..+..++.|++.|                       |+|||+++++|||+|+.||.+.    
T Consensus       300 ~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivHrDlkp~NIll~----  352 (495)
T 1opk_A          300 YGNLLDYLRECNRQEVSAVVLLYMATQISSA-----------------------MEYLEKKNFIHRNLAARNCLVG----  352 (495)
T ss_dssp             TCBHHHHHHHSCTTTSCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEEC----
T ss_pred             CCCHHHHHHhcCcCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCChhhEEEC----
Confidence            8999999988765567888888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       353 --------------------------------------------------------------------------------  352 (495)
T 1opk_A          353 --------------------------------------------------------------------------------  352 (495)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....+||+|||++......    .....+++.|+|||++.+..++.++|+|||||++|+|+| |..||.
T Consensus       353 -----------~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~  421 (495)
T 1opk_A          353 -----------ENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP  421 (495)
T ss_dssp             -----------GGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             -----------CCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCC
Confidence                       2357999999998763321    123445678999999988889999999999999999999 999999


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+++
T Consensus       422 ~~~~~~~~  429 (495)
T 1opk_A          422 GIDLSQVY  429 (495)
T ss_dssp             TCCGGGHH
T ss_pred             CCCHHHHH
Confidence            87766554

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=1.9e-34  Score=262.50  Aligned_cols=200  Identities=22%  Similarity=0.278  Sum_probs=164.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||+|+||+||+|.++.+++.||+|++....  ...+.+.+|+++|+.++|+|      |+++++++...++.|+||||
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~e~  101 (285)
T 3is5_A           28 RKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPN------IIKIFEVFEDYHNMYIVMET  101 (285)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTT------BCCEEEEEECSSEEEEEECC
T ss_pred             ceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCch------HHhHHHheecCCeEEEEEEe
Confidence            67999999999999999999999999997643  23467889999999999877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          80 L-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        80 ~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      + +++|.+++...  ....+++..++.++.|++.|                       |+|||++|++|||+|+.||.+.
T Consensus       102 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivH~dikp~NIl~~  158 (285)
T 3is5_A          102 CEGGELLERIVSAQARGKALSEGYVAELMKQMMNA-----------------------LAYFHSQHVVHKDLKPENILFQ  158 (285)
T ss_dssp             CSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCSGGGEEES
T ss_pred             CCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEEECCCCHHHEEEe
Confidence            9 88999998654  22457788888888888887                       9999999999999999999885


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +-                                                                              
T Consensus       159 ~~------------------------------------------------------------------------------  160 (285)
T 3is5_A          159 DT------------------------------------------------------------------------------  160 (285)
T ss_dssp             SS------------------------------------------------------------------------------
T ss_pred             cC------------------------------------------------------------------------------
Confidence            20                                                                              


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    .....++|+|||++....  .......||+.|+|||.+ ...++.++|+||+||++++|++|..||
T Consensus       161 --------------~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~-~~~~~~~~Di~slG~il~~ll~g~~pf  225 (285)
T 3is5_A          161 --------------SPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVF-KRDVTFKCDIWSAGVVMYFLLTGCLPF  225 (285)
T ss_dssp             --------------STTCCEEECCCCCCCC----------CTTGGGCCHHHH-TTCCCHHHHHHHHHHHHHHHHHSSCSS
T ss_pred             --------------CCCCCEEEEeeecceecCCcccCcCcccccCcCChHHh-ccCCCcccCeehHHHHHHHHHhCCCCC
Confidence                          023569999999987532  233456789999999987 456889999999999999999999999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      .+.+..+..
T Consensus       226 ~~~~~~~~~  234 (285)
T 3is5_A          226 TGTSLEEVQ  234 (285)
T ss_dssp             CCSSHHHHH
T ss_pred             CCCCHHHHH
Confidence            887655543

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=6.9e-34  Score=263.31  Aligned_cols=191  Identities=22%  Similarity=0.250  Sum_probs=156.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC--------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--------   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~--------   71 (351)
                      ++||+|+||+||+|+++.+++.||||++...  ....+.+.+|+++|++++|+|      |++++++|...+        
T Consensus        12 ~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~~~~~~   85 (332)
T 3qd2_B           12 QCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPG------IVRYFNAWLETPPEKWQEEM   85 (332)
T ss_dssp             EEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTT------BCCEEEEEEECCSCHHHHHH
T ss_pred             eEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCC------EeeEEEEEEEeccchhhhhh
Confidence            6799999999999999889999999999743  234567889999999998877      999999986543        


Q ss_pred             -------------------------------------------------eEEEEEecc-CCCHHHHHHhcCCC-CCchHH
Q psy2006          72 -------------------------------------------------HMCIAFEIL-GLSVFDFLKENNYL-PYSLDQ  100 (351)
Q Consensus        72 -------------------------------------------------~~~lV~E~~-g~sL~~~l~~~~~~-~~~~~~  100 (351)
                                                                       ++++||||| +++|.+++...... ..++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~  165 (332)
T 3qd2_B           86 DEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGV  165 (332)
T ss_dssp             HC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHH
T ss_pred             hhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHH
Confidence                                                             489999999 88999999886432 233445


Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCC
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAP  180 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~p  180 (351)
                      +..++.|++.|                       |.|||++|++|||+|++||.+.                        
T Consensus       166 ~~~i~~qi~~a-----------------------L~~LH~~~ivH~Dlkp~NIll~------------------------  198 (332)
T 3qd2_B          166 CLHIFIQIAEA-----------------------VEFLHSKGLMHRDLKPSNIFFT------------------------  198 (332)
T ss_dssp             HHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEEC------------------------
T ss_pred             HHHHHHHHHHH-----------------------HHHHHhCCeeecCCCcccEEEe------------------------
Confidence            66777777776                       9999999999999999999886                        


Q ss_pred             ccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeec
Q psy2006         181 ERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLID  260 (351)
Q Consensus       181 e~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~d  260 (351)
                                                                                             ....+||+|
T Consensus       199 -----------------------------------------------------------------------~~~~~kL~D  207 (332)
T 3qd2_B          199 -----------------------------------------------------------------------MDDVVKVGD  207 (332)
T ss_dssp             -----------------------------------------------------------------------TTCCEEECC
T ss_pred             -----------------------------------------------------------------------CCCCEEEee
Confidence                                                                                   234689999


Q ss_pred             cCCcceecc---------------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         261 FGSATFDDE---------------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       261 fg~~~~~~~---------------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                      ||++.....               ......||+.|+|||.+.+..++.++|+||+||++|++++|..|+..
T Consensus       208 fG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~  278 (332)
T 3qd2_B          208 FGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQME  278 (332)
T ss_dssp             CTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             cCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhH
Confidence            998865322               12345799999999999998999999999999999999999888754

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=6.7e-34  Score=268.82  Aligned_cols=192  Identities=22%  Similarity=0.409  Sum_probs=157.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------e
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~   72 (351)
                      +.||+|+||+||+|.+..+++.||||++...   ....+.+.+|+.+++.+.|+|      |++++++|...+      +
T Consensus        31 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~~~~~  104 (371)
T 2xrw_A           31 KPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN------IIGLLNVFTPQKSLEEFQD  104 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSCCSTTTCCE
T ss_pred             eeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCC------ccceEEeeccccccccccc
Confidence            5799999999999999999999999999753   234456789999999999887      999999998765      8


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +|+||||++++|.+.+..    .+++..++.++.|++.|                       |.|||++|++|||+|+.|
T Consensus       105 ~~lv~e~~~~~l~~~~~~----~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~ivH~Dlkp~N  157 (371)
T 2xrw_A          105 VYIVMELMDANLCQVIQM----ELDHERMSYLLYQMLCG-----------------------IKHLHSAGIIHRDLKPSN  157 (371)
T ss_dssp             EEEEEECCSEEHHHHHHS----CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGG
T ss_pred             eEEEEEcCCCCHHHHHhh----ccCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecccCCHHH
Confidence            999999998899998863    47788888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       158 Il~~----------------------------------------------------------------------------  161 (371)
T 2xrw_A          158 IVVK----------------------------------------------------------------------------  161 (371)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                         ..+.+||+|||++.....  ......||+.|+|||++.+.+++.++|+||+||++|+|++|
T Consensus       162 -------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g  222 (371)
T 2xrw_A          162 -------------------SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKG  222 (371)
T ss_dssp             -------------------TTSCEEECCCCC----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHS
T ss_pred             -------------------CCCCEEEEEeecccccccccccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhC
Confidence                               235699999999876432  23456889999999999998999999999999999999999


Q ss_pred             cccccccCCCc
Q psy2006         311 ITLMARKTKTK  321 (351)
Q Consensus       311 ~~pf~~~~~~~  321 (351)
                      ..||.+.+..+
T Consensus       223 ~~pf~~~~~~~  233 (371)
T 2xrw_A          223 GVLFPGTDHID  233 (371)
T ss_dssp             SCSSCCSSHHH
T ss_pred             CCCCCCCCHHH
Confidence            99998876543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.9e-34  Score=262.81  Aligned_cols=193  Identities=21%  Similarity=0.280  Sum_probs=157.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh---------------------------hhHHHHHHHHHHHHhCCCCC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK---------------------------YREAARLEINALQKIGEKDP   54 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~---------------------------~~~~~~~E~~~l~~l~h~~~   54 (351)
                      ++||+|+||+||+|.+..+++.||+|++.....                           ..+.+.+|+++|+.++|+| 
T Consensus        19 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~-   97 (298)
T 2zv2_A           19 DEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKLDHPN-   97 (298)
T ss_dssp             EEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTCCCTT-
T ss_pred             eEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhCCCCC-
Confidence            579999999999999999999999999965321                           1245788999999999877 


Q ss_pred             CCCcceeeeeeeEee--CCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhH
Q psy2006          55 NGRHLCVKMLDWFDY--HGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQL  131 (351)
Q Consensus        55 ~g~~~Iv~l~~~f~~--~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~  131 (351)
                           |+++++++..  .+++|+||||+ +++|.+++..   ..+++..++.++.|++.|                    
T Consensus        98 -----iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---~~~~~~~~~~~~~qi~~~--------------------  149 (298)
T 2zv2_A           98 -----VVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTL---KPLSEDQARFYFQDLIKG--------------------  149 (298)
T ss_dssp             -----BCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCS---SCCCHHHHHHHHHHHHHH--------------------
T ss_pred             -----CCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhc---CCCCHHHHHHHHHHHHHH--------------------
Confidence                 9999999987  56999999999 8888876533   357888888888888888                    


Q ss_pred             HhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCC
Q psy2006         132 IYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERIS  211 (351)
Q Consensus       132 ~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t  211 (351)
                         |.|||++|++|||+|+.||.+.                                                       
T Consensus       150 ---l~~lH~~~ivH~Dlkp~Nil~~-------------------------------------------------------  171 (298)
T 2zv2_A          150 ---IEYLHYQKIIHRDIKPSNLLVG-------------------------------------------------------  171 (298)
T ss_dssp             ---HHHHHHTTEECCCCCGGGEEEC-------------------------------------------------------
T ss_pred             ---HHHHHHCCeeccCCCHHHEEEC-------------------------------------------------------
Confidence               9999999999999999999886                                                       


Q ss_pred             hhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeec
Q psy2006         212 LSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILE  288 (351)
Q Consensus       212 ~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~  288 (351)
                                                              ..+.+||+|||++.....   ......||+.|+|||++.+
T Consensus       172 ----------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  211 (298)
T 2zv2_A          172 ----------------------------------------EDGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSE  211 (298)
T ss_dssp             ----------------------------------------TTSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCT
T ss_pred             ----------------------------------------CCCCEEEecCCCccccccccccccCCcCCccccChhhhcc
Confidence                                                    235699999999875332   2245689999999999976


Q ss_pred             CC---CCCccceeeeeeeeEeeccccccccccCCCc
Q psy2006         289 LG---WAQPCDVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       289 ~~---~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                      ..   .+.++|+|||||++|+|++|..||.+.+...
T Consensus       212 ~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~  247 (298)
T 2zv2_A          212 TRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMC  247 (298)
T ss_dssp             TCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHH
T ss_pred             CCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHH
Confidence            55   3678899999999999999999998765443

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=2.4e-34  Score=267.11  Aligned_cols=197  Identities=17%  Similarity=0.197  Sum_probs=164.7

Q ss_pred             ccccCcccceEEEEEEeecCc---EEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS---VVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~---~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+++   .||||++...  ....+.+.+|+.+|+.++|+|      |+++++++...++.|+|
T Consensus        55 ~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv  128 (325)
T 3kul_A           55 KIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPN------IIRLEGVVTRGRLAMIV  128 (325)
T ss_dssp             EEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTT------BCCEEEEECGGGCCEEE
T ss_pred             eEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCC------CCcEEEEEEeCCccEEE
Confidence            579999999999999986554   5999999753  344567889999999998877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.++++... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+
T Consensus       129 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivH~Dlkp~NIll  184 (325)
T 3kul_A          129 TEYMENGSLDTFLRTHD-GQFTIMQLVGMLRGVGAG-----------------------MRYLSDLGYVHRDLAARNVLV  184 (325)
T ss_dssp             EECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEE
T ss_pred             eeCCCCCcHHHHHHhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeCCCCCcceEEE
Confidence            9999 889999997653 357888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       185 ~-------------------------------------------------------------------------------  185 (325)
T 3kul_A          185 D-------------------------------------------------------------------------------  185 (325)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                      ....++|+|||++......      .....+|+.|+|||++.+..++.++|+|||||++|++++
T Consensus       186 ----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~  249 (325)
T 3kul_A          186 ----------------SNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLA  249 (325)
T ss_dssp             ----------------TTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHT
T ss_pred             ----------------CCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHc
Confidence                            2356999999998753221      123445778999999988889999999999999999998


Q ss_pred             -ccccccccCCCcee
Q psy2006         310 -GITLMARKTKTKYF  323 (351)
Q Consensus       310 -G~~pf~~~~~~~~~  323 (351)
                       |..||.+.+..+..
T Consensus       250 ~g~~p~~~~~~~~~~  264 (325)
T 3kul_A          250 YGERPYWNMTNRDVI  264 (325)
T ss_dssp             TSCCTTTTSCHHHHH
T ss_pred             CCCCCcccCCHHHHH
Confidence             99999887766554

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=2.4e-35  Score=279.22  Aligned_cols=195  Identities=14%  Similarity=0.096  Sum_probs=153.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHh---CCCCCCCCcceeeee-------eeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKI---GEKDPNGRHLCVKML-------DWF   67 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l---~h~~~~g~~~Iv~l~-------~~f   67 (351)
                      ++||+|+||+||+|++..+++.||||++...    ....+.+.+|+.+++.+   .|+|      |++++       +++
T Consensus        79 ~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpn------iv~~~~~~~~~~~~~  152 (377)
T 3byv_A           79 TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQK------QAKVHLRFIFPFDLV  152 (377)
T ss_dssp             EEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHH------HHHHHHCBCCCSEEE
T ss_pred             ceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHH------HHHHHhhhhhhhhhh
Confidence            5799999999999999899999999999632    23456788999665555   4444      99998       777


Q ss_pred             eeCC-----------------eEEEEEeccCCCHHHHHHhcCCCCCch-------HHHHHHHHHHHHhhhcCCCCCchHH
Q psy2006          68 DYHG-----------------HMCIAFEILGLSVFDFLKENNYLPYSL-------DQVRHMSYQLIYAKENNYLPYSLDQ  123 (351)
Q Consensus        68 ~~~~-----------------~~~lV~E~~g~sL~~~l~~~~~~~~~~-------~~~~~~~~ql~~~~~~~~~~~~~~~  123 (351)
                      ...+                 ..||||||++|+|.+++....  .+++       ..+..++.|++.|            
T Consensus       153 ~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~~g~L~~~l~~~~--~~~~~~~~l~~~~~~~i~~qi~~a------------  218 (377)
T 3byv_A          153 KDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLL--SHSSTHKSLVHHARLQLTLQVIRL------------  218 (377)
T ss_dssp             ECTTSCSEEEC------CEEESEEEEEECCSEEHHHHHHHHH--HTTTTTHHHHHHHHHHHHHHHHHH------------
T ss_pred             hccCCccccccccCCCceEEEEEEEEEeccCCCHHHHHHhcc--ccccccccccHHHHHHHHHHHHHH------------
Confidence            6654                 389999999999999998753  2333       5555566666666            


Q ss_pred             HHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhc
Q psy2006         124 VRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLE  203 (351)
Q Consensus       124 ~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~  203 (351)
                                 |+|||++|++|||+|++||.+.                                               
T Consensus       219 -----------L~~LH~~~ivHrDikp~NIll~-----------------------------------------------  240 (377)
T 3byv_A          219 -----------LASLHHYGLVHTYLRPVDIVLD-----------------------------------------------  240 (377)
T ss_dssp             -----------HHHHHHTTEECSCCCGGGEEEC-----------------------------------------------
T ss_pred             -----------HHHHHhCCeecCCCCHHHEEEc-----------------------------------------------
Confidence                       9999999999999999999886                                               


Q ss_pred             cCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCc
Q psy2006         204 YEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAP  283 (351)
Q Consensus       204 ~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aP  283 (351)
                                                                      ..+.+||+|||++...........| +.|+||
T Consensus       241 ------------------------------------------------~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aP  271 (377)
T 3byv_A          241 ------------------------------------------------QRGGVFLTGFEHLVRDGARVVSSVS-RGFEPP  271 (377)
T ss_dssp             ------------------------------------------------TTCCEEECCGGGCEETTCEEECCCC-TTCCCH
T ss_pred             ------------------------------------------------CCCCEEEEechhheecCCcccCCCC-cCccCh
Confidence                                                            2357999999999876555566778 999999


Q ss_pred             eeeecC-----------CCCCccceeeeeeeeEeeccccccccccCCCcee
Q psy2006         284 EVILEL-----------GWAQPCDVWSIGCIIFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       284 E~~~~~-----------~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~~~  323 (351)
                      |++.+.           .++.++|+|||||++|+|++|..||.+.+..+.+
T Consensus       272 E~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~~  322 (377)
T 3byv_A          272 ELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGGS  322 (377)
T ss_dssp             HHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CCS
T ss_pred             hhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccch
Confidence            999887           7899999999999999999999999887765544

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=271.44  Aligned_cols=201  Identities=18%  Similarity=0.202  Sum_probs=164.6

Q ss_pred             ccccCcccceEEEEE-----EeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNV-----VYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~-----~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++||+|+||+||+|.     +..+++.||||++...  ......+.+|+.+++.++|+|      |+++++++...+..+
T Consensus        77 ~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpn------Iv~~~~~~~~~~~~~  150 (367)
T 3l9p_A           77 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQN------IVRCIGVSLQSLPRF  150 (367)
T ss_dssp             EECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSCE
T ss_pred             eEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCC------CCeEEEEEecCCCCE
Confidence            579999999999999     4457889999999643  334456788999999999887      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCC-----CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccccc
Q psy2006          75 IAFEIL-GLSVFDFLKENNY-----LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV  148 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~-----~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~  148 (351)
                      +||||+ +++|.+++.....     ..+++..+..++.|++.|                       |.|||++|++|||+
T Consensus       151 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivHrDl  207 (367)
T 3l9p_A          151 ILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG-----------------------CQYLEENHFIHRDI  207 (367)
T ss_dssp             EEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCC
T ss_pred             EEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHH-----------------------HHHHHhCCeeCCCC
Confidence            999999 8899999987642     236666777777777777                       99999999999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      |+.||.+..-|                                                                     
T Consensus       208 kp~NIll~~~~---------------------------------------------------------------------  218 (367)
T 3l9p_A          208 AARNCLLTCPG---------------------------------------------------------------------  218 (367)
T ss_dssp             CGGGEEESCSS---------------------------------------------------------------------
T ss_pred             ChhhEEEecCC---------------------------------------------------------------------
Confidence            99999886111                                                                     


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCccee-----ccccccccccceeeCceeeecCCCCCccceeeeeee
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD-----DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCI  303 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-----~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~  303 (351)
                                             ....+||+|||++...     ........||+.|+|||++.+..++.++|+|||||+
T Consensus       219 -----------------------~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~i  275 (367)
T 3l9p_A          219 -----------------------PGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL  275 (367)
T ss_dssp             -----------------------TTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             -----------------------CCceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHH
Confidence                                   1235899999998642     122344677899999999999999999999999999


Q ss_pred             eEeecc-ccccccccCCCcee
Q psy2006         304 IFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       304 l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +|+|++ |..||.+.+..+.+
T Consensus       276 l~ellt~g~~pf~~~~~~~~~  296 (367)
T 3l9p_A          276 LWEIFSLGYMPYPSKSNQEVL  296 (367)
T ss_dssp             HHHHHTTSCCSSTTCCHHHHH
T ss_pred             HHHHHhCCCCCCCCCCHHHHH
Confidence            999998 99999887766554

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=255.66  Aligned_cols=197  Identities=22%  Similarity=0.346  Sum_probs=147.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|.+..+++.||+|++....    ...+.+.+|+.+++.++|+|      |+++++++...+..++||
T Consensus        17 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~   90 (278)
T 3cok_A           17 NLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPS------ILELYNYFEDSNYVYLVL   90 (278)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             eeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCC------eEeEEEEEccCCeEEEEE
Confidence            57999999999999998899999999997532    12356789999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|+|+++.|+.+.
T Consensus        91 e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl~p~Nili~  146 (278)
T 3cok_A           91 EMCHNGEMNRYLKNRV-KPFSENEARHFMHQIITG-----------------------MLYLHSHGILHRDLTLSNLLLT  146 (278)
T ss_dssp             ECCTTEEHHHHHHTCS-SCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSSCCGGGEEEC
T ss_pred             ecCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHEEEc
Confidence            999 889999998653 367888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       147 --------------------------------------------------------------------------------  146 (278)
T 3cok_A          147 --------------------------------------------------------------------------------  146 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ....++|+|||++....   .......||+.|+|||.+.+..++.++|+||+||+++++++|..|
T Consensus       147 ---------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p  211 (278)
T 3cok_A          147 ---------------RNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPP  211 (278)
T ss_dssp             ---------------TTCCEEECCCTTCEECC----------------------------CTHHHHHHHHHHHHHHSSCS
T ss_pred             ---------------CCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCC
Confidence                           23568999999987533   222346789999999999888899999999999999999999999


Q ss_pred             ccccCCCcee
Q psy2006         314 MARKTKTKYF  323 (351)
Q Consensus       314 f~~~~~~~~~  323 (351)
                      |...+..+.+
T Consensus       212 ~~~~~~~~~~  221 (278)
T 3cok_A          212 FDTDTVKNTL  221 (278)
T ss_dssp             SCCCSCC---
T ss_pred             CCChhHHHHH
Confidence            9887655544

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=6.3e-34  Score=261.86  Aligned_cols=195  Identities=24%  Similarity=0.379  Sum_probs=161.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|.+..+++.||+|++....   ...+.+.+|+++++.++|+|      |+++++++...++.++|||
T Consensus         9 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            9 GKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPN------LVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEEEE
T ss_pred             eEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCC------ccchhheeecCCeEEEEEE
Confidence            68999999999999999999999999996532   23456778999999999877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.|+.+. 
T Consensus        83 ~~~~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~-----------------------l~~lH~~~ivH~dlkp~Nil~~-  136 (311)
T 4agu_A           83 YCDHTVLHELDRYQR--GVPEHLVKSITWQTLQA-----------------------VNFCHKHNCIHRDVKPENILIT-  136 (311)
T ss_dssp             CCSEEHHHHHHHTSS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC-
T ss_pred             eCCCchHHHHHhhhc--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCcCCCCChhhEEEc-
Confidence            99 677877776553  57888888888888888                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (311)
T 4agu_A          137 --------------------------------------------------------------------------------  136 (311)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ..+.++|+|||++.....   ......||+.|+|||++.+ ..++.++|+||+||+++++++|..|
T Consensus       137 --------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p  202 (311)
T 4agu_A          137 --------------KHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPL  202 (311)
T ss_dssp             --------------TTSCEEECCCTTCEECC------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             --------------CCCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCC
Confidence                          235699999999876332   2345678999999999976 5679999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |.+.+..+.
T Consensus       203 ~~~~~~~~~  211 (311)
T 4agu_A          203 WPGKSDVDQ  211 (311)
T ss_dssp             CCCSSHHHH
T ss_pred             CCCCCHHHH
Confidence            988775544

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=2.7e-34  Score=275.96  Aligned_cols=195  Identities=21%  Similarity=0.338  Sum_probs=160.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------eEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------HMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~~~l   75 (351)
                      +.||+|+||+||+|++..+++.||||++....   ....+|+++|+.++|+|      |++++++|...+      ++++
T Consensus        60 ~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~---~~~~~E~~il~~l~hpn------iv~l~~~~~~~~~~~~~~~~~l  130 (420)
T 1j1b_A           60 KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK---RFKNRELQIMRKLDHCN------IVRLRYFFYSSGEKKDEVYLNL  130 (420)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEECCT---TSCCHHHHHHHTCCCTT------BCCEEEEEEEEETTTTEEEEEE
T ss_pred             eEEeeCCCEEEEEEEECCCCcEEEEEEecccc---hhHHHHHHHHHHcCCCC------ccceeeEEeccCCCCcceeEEe
Confidence            57999999999999998899999999997542   22347999999999888      999999986432      5889


Q ss_pred             EEeccCCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          76 AFEILGLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      ||||++++|.+.+...  ....+++..++.++.|++.|                       |.|||++||+|||+|+.||
T Consensus       131 v~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDlkp~NI  187 (420)
T 1j1b_A          131 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRS-----------------------LAYIHSFGICHRDIKPQNL  187 (420)
T ss_dssp             EEECCCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECSCCSGGGE
T ss_pred             ehhcccccHHHHHHHHhhccCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCChhhE
Confidence            9999988888877642  23457777777777777777                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+..                                                                            
T Consensus       188 Ll~~----------------------------------------------------------------------------  191 (420)
T 1j1b_A          188 LLDP----------------------------------------------------------------------------  191 (420)
T ss_dssp             EEET----------------------------------------------------------------------------
T ss_pred             EEeC----------------------------------------------------------------------------
Confidence            8861                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG  310 (351)
                                        ....+||+|||++...  ........||+.|+|||++.+. .++.++|||||||++|+|++|
T Consensus       192 ------------------~~~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G  253 (420)
T 1j1b_A          192 ------------------DTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG  253 (420)
T ss_dssp             ------------------TTTEEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHS
T ss_pred             ------------------CCCeEEeccchhhhhcccCCCceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhC
Confidence                              1245899999999753  2233457889999999999765 689999999999999999999


Q ss_pred             cccccccCCCce
Q psy2006         311 ITLMARKTKTKY  322 (351)
Q Consensus       311 ~~pf~~~~~~~~  322 (351)
                      ..||.+.+..+.
T Consensus       254 ~~pf~~~~~~~~  265 (420)
T 1j1b_A          254 QPIFPGDSGVDQ  265 (420)
T ss_dssp             SCSSCCSSHHHH
T ss_pred             CCCCCCCCHHHH
Confidence            999998775443

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=3.6e-34  Score=267.12  Aligned_cols=191  Identities=26%  Similarity=0.365  Sum_probs=164.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh---------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK---------YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~---------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~   72 (351)
                      ++||+|+||+||+|+++.+++.||+|++.....         ..+.+.+|+.+|+.++|+|      |++++++|...++
T Consensus        30 ~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------Iv~~~~~~~~~~~  103 (335)
T 3dls_A           30 SPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHAN------IIKVLDIFENQGF  103 (335)
T ss_dssp             EECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTT------BCCEEEEEECSSE
T ss_pred             eEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCC------EeeEEEEEeeCCE
Confidence            579999999999999999999999999976421         2335677999999998877      9999999999999


Q ss_pred             EEEEEecc-CC-CHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          73 MCIAFEIL-GL-SVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        73 ~~lV~E~~-g~-sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      +++||||+ ++ +|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+
T Consensus       104 ~~lv~e~~~~g~~l~~~~~~~~--~l~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivH~Dlkp  158 (335)
T 3dls_A          104 FQLVMEKHGSGLDLFAFIDRHP--RLDEPLASYIFRQLVSA-----------------------VGYLRLKDIIHRDIKD  158 (335)
T ss_dssp             EEEEEECCTTSCBHHHHHHTCC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSG
T ss_pred             EEEEEEeCCCCccHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEEeccCH
Confidence            99999998 55 9999998765  57888888888888888                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .||.+.                                                                          
T Consensus       159 ~NIll~--------------------------------------------------------------------------  164 (335)
T 3dls_A          159 ENIVIA--------------------------------------------------------------------------  164 (335)
T ss_dssp             GGEEEC--------------------------------------------------------------------------
T ss_pred             HHEEEc--------------------------------------------------------------------------
Confidence            999886                                                                          


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCC-CCccceeeeeeeeEee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFEL  307 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l  307 (351)
                                           ....+||+|||++.....  ......||+.|+|||++.+..+ +.++|+|||||++|+|
T Consensus       165 ---------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el  223 (335)
T 3dls_A          165 ---------------------EDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTL  223 (335)
T ss_dssp             ---------------------TTSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHH
T ss_pred             ---------------------CCCcEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHH
Confidence                                 235799999999876432  3345679999999999988877 7889999999999999


Q ss_pred             ccccccccccC
Q psy2006         308 YLGITLMARKT  318 (351)
Q Consensus       308 ~tG~~pf~~~~  318 (351)
                      ++|..||....
T Consensus       224 ~~g~~pf~~~~  234 (335)
T 3dls_A          224 VFEENPFCELE  234 (335)
T ss_dssp             HHSSCSCSSGG
T ss_pred             HhCCCchhhHH
Confidence            99999997643

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=2e-34  Score=276.90  Aligned_cols=197  Identities=24%  Similarity=0.375  Sum_probs=157.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~   72 (351)
                      ++||+|+||+||+|.+..+++.||+|++....         .....+.+|+++|++++|+|      |++++++|. .+.
T Consensus       141 ~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~l~~~~~-~~~  213 (419)
T 3i6u_A          141 KTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPC------IIKIKNFFD-AED  213 (419)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTT------BCCCCEEEE-SSE
T ss_pred             eEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCC------EeeEEEEEe-cCc
Confidence            57999999999999999999999999997532         11224678999999999887      999999985 456


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      .|+||||+ +++|.+++....  .+++..++.++.|++.|                       |+|||+++++|||+|+.
T Consensus       214 ~~lv~e~~~~g~L~~~l~~~~--~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~ivHrDlkp~  268 (419)
T 3i6u_A          214 YYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLA-----------------------VQYLHENGIIHRDLKPE  268 (419)
T ss_dssp             EEEEEECCTTCBGGGGTSSSC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGG
T ss_pred             eEEEEEcCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCChH
Confidence            89999999 889999887654  57888888888888888                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.+.+-+                                                                        
T Consensus       269 NIll~~~~------------------------------------------------------------------------  276 (419)
T 3i6u_A          269 NVLLSSQE------------------------------------------------------------------------  276 (419)
T ss_dssp             GEEESSSS------------------------------------------------------------------------
T ss_pred             hEEEecCC------------------------------------------------------------------------
Confidence            99886200                                                                        


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeec---CCCCCccceeeeeeeeEe
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwslG~~l~~  306 (351)
                                          ....+||+|||++.....  .....+||+.|+|||++.+   ..++.++|+||+||++|+
T Consensus       277 --------------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~  336 (419)
T 3i6u_A          277 --------------------EDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFI  336 (419)
T ss_dssp             --------------------SSCCEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHH
T ss_pred             --------------------CcceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHH
Confidence                                124599999999976432  2345789999999999863   567889999999999999


Q ss_pred             eccccccccccCCCce
Q psy2006         307 LYLGITLMARKTKTKY  322 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~  322 (351)
                      |++|..||........
T Consensus       337 lltg~~pf~~~~~~~~  352 (419)
T 3i6u_A          337 CLSGYPPFSEHRTQVS  352 (419)
T ss_dssp             HHHSSCSSCCCSSSCC
T ss_pred             HHHCCCCCCCCcchHH
Confidence            9999999987665543

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=100.00  E-value=1.1e-33  Score=274.23  Aligned_cols=195  Identities=19%  Similarity=0.227  Sum_probs=165.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-eEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-HMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-~~~lV~E~~   80 (351)
                      ++||+|+||+||+|.+  .++.||||+++... ..+.+.+|+++|++++|+|      |+++++++...+ .+||||||+
T Consensus       199 ~~lG~G~fg~V~~~~~--~~~~vavK~~~~~~-~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~~iv~e~~  269 (450)
T 1k9a_A          199 QTIGKGEFGDVMLGDY--RGNKVAVKCIKNDA-TAQAFLAEASVMTQLRHSN------LVQLLGVIVEEKGGLYIVTEYM  269 (450)
T ss_dssp             EEEEECSSEEEEEEEE--TTEEEEEEEESSCT-TSHHHHHHHHHHHTCCCTT------BCCEEEEEECTTSCEEEEEECC
T ss_pred             eeecCcCCeeEEEEEe--cCCeEEEEEeCCch-HHHHHHHHHHHHHhccCCC------EEEEEEEEEcCCCceEEEEEec
Confidence            5799999999999985  58899999998643 4567889999999999887      999999987665 899999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.......+++..+..++.|++.|                       |.|||+++++|||+|+.||.+.   
T Consensus       270 ~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~LH~~~ivHrDlkp~Nill~---  323 (450)
T 1k9a_A          270 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA-----------------------MEYLEGNNFVHRDLAARNVLVS---  323 (450)
T ss_dssp             TTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGEEEC---
T ss_pred             CCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeCCCCCHhhEEEC---
Confidence             8899999998764457888888888888888                       9999999999999999999886   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (450)
T 1k9a_A          324 --------------------------------------------------------------------------------  323 (450)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccC
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKT  318 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~  318 (351)
                                  ....+||+|||++...........+++.|+|||++.+..++.++|+|||||++|+|+| |..||.+.+
T Consensus       324 ------------~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~  391 (450)
T 1k9a_A          324 ------------EDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  391 (450)
T ss_dssp             ------------TTSCEEECCCTTCEECC------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSC
T ss_pred             ------------CCCCEEEeeCCCcccccccccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence                        2357999999998765444445567889999999999999999999999999999998 999999887


Q ss_pred             CCcee
Q psy2006         319 KTKYF  323 (351)
Q Consensus       319 ~~~~~  323 (351)
                      ..++.
T Consensus       392 ~~~~~  396 (450)
T 1k9a_A          392 LKDVV  396 (450)
T ss_dssp             TTTHH
T ss_pred             HHHHH
Confidence            76654

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=1.1e-33  Score=255.87  Aligned_cols=198  Identities=18%  Similarity=0.288  Sum_probs=168.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||+|+||+||+|.+..+++.||+|++.... ...+.+.+|+++++.++|+|      |++++++|...+..|+||||+
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~   88 (277)
T 3f3z_A           15 NTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPN------IIRLYETFEDNTDIYLVMELC   88 (277)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTT------BCCEEEEEECSSEEEEEEECC
T ss_pred             eEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCC------EeeEEEEEecCCeEEEEEecc
Confidence            57999999999999999999999999997542 34567889999999998877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++....  .+++..+..++.|++.+                       |.|||++|++|+|+|+.|+.+..  
T Consensus        89 ~~~~L~~~~~~~~--~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~i~H~dlkp~Nil~~~--  141 (277)
T 3f3z_A           89 TGGELFERVVHKR--VFRESDAARIMKDVLSA-----------------------VAYCHKLNVAHRDLKPENFLFLT--  141 (277)
T ss_dssp             CSCBHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEESS--
T ss_pred             CCCcHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccCCCCCHHHEEEec--
Confidence             889999998765  57888888888888888                       99999999999999999998841  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                               .                                                                      
T Consensus       142 ---------~----------------------------------------------------------------------  142 (277)
T 3f3z_A          142 ---------D----------------------------------------------------------------------  142 (277)
T ss_dssp             ---------S----------------------------------------------------------------------
T ss_pred             ---------C----------------------------------------------------------------------
Confidence                     0                                                                      


Q ss_pred             hccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                 .....++|+|||++....  .......||+.|+|||.+.+ .++.++|+||+||+++++++|..||.+.
T Consensus       143 -----------~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~  210 (277)
T 3f3z_A          143 -----------SPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPFSAP  210 (277)
T ss_dssp             -----------STTCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTT-CBCTTHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -----------CCCCcEEEEecccceeccCccchhccCCCCCccChHHhcc-cCCchhhehhHHHHHHHHHHCCCCCCCC
Confidence                       024579999999987532  23345679999999998854 4899999999999999999999999887


Q ss_pred             CCCcee
Q psy2006         318 TKTKYF  323 (351)
Q Consensus       318 ~~~~~~  323 (351)
                      +..+..
T Consensus       211 ~~~~~~  216 (277)
T 3f3z_A          211 TDSEVM  216 (277)
T ss_dssp             SHHHHH
T ss_pred             CHHHHH
Confidence            766554

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=5.1e-34  Score=258.80  Aligned_cols=200  Identities=26%  Similarity=0.346  Sum_probs=167.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++||+|+||+||+|.+..+++.||+|++....       ...+.+.+|+++++.+.|+|      |+++++++...+..+
T Consensus        11 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~   84 (283)
T 3bhy_A           11 EELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPN------IITLHDIFENKTDVV   84 (283)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEE
T ss_pred             HhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCC------eeehhheecCCCeEE
Confidence            67999999999999998899999999997532       13567889999999999877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++....  .+++..+..++.|++.+                       |.|||++|++|+|+++.|+
T Consensus        85 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dl~p~Ni  139 (283)
T 3bhy_A           85 LILELVSGGELFDFLAEKE--SLTEDEATQFLKQILDG-----------------------VHYLHSKRIAHFDLKPENI  139 (283)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGE
T ss_pred             EEEeecCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccCCCCChHHE
Confidence            999999 899999998754  57888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+-|.                                                                         
T Consensus       140 l~~~~~~-------------------------------------------------------------------------  146 (283)
T 3bhy_A          140 MLLDKNV-------------------------------------------------------------------------  146 (283)
T ss_dssp             EESCSSS-------------------------------------------------------------------------
T ss_pred             EEecCCC-------------------------------------------------------------------------
Confidence            8863110                                                                         


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                        ....++|+|||++....  .......|++.|+|||++.+..++.++|+|||||+++++++|.
T Consensus       147 ------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  208 (283)
T 3bhy_A          147 ------------------PNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGA  208 (283)
T ss_dssp             ------------------SSCCEEECCCTTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------CCCceEEEecccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCC
Confidence                              12468999999987532  2334567899999999998888999999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      .||.+.+..+.+
T Consensus       209 ~p~~~~~~~~~~  220 (283)
T 3bhy_A          209 SPFLGETKQETL  220 (283)
T ss_dssp             CTTCCSSHHHHH
T ss_pred             CCCCCcchHHHH
Confidence            999887765543

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.3e-33  Score=266.04  Aligned_cols=195  Identities=24%  Similarity=0.426  Sum_probs=165.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-----eEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-----HMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-----~~~   74 (351)
                      +.||+|+||+||+|.+..+++.||+|++...  ....+.+.+|+++|+.+.|+|      |+++++++....     ..|
T Consensus        33 ~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~~~~~~  106 (364)
T 3qyz_A           33 SYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHEN------IIGINDIIRAPTIEQMKDVY  106 (364)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTT------BCCCCEEECCSSTTTCCCEE
T ss_pred             EEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCC------CccceeEEecCCccccceEE
Confidence            5799999999999999999999999999743  233467789999999999887      999999997653     799


Q ss_pred             EEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          75 IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        75 lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      +||||++++|.++++..   .+++..++.++.|++.|                       |.|||++|++|||+|++||.
T Consensus       107 iv~e~~~~~L~~~l~~~---~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~Dikp~NIl  160 (364)
T 3qyz_A          107 IVQDLMETDLYKLLKTQ---HLSNDHICYFLYQILRG-----------------------LKYIHSANVLHRDLKPSNLL  160 (364)
T ss_dssp             EEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEE
T ss_pred             EEEcccCcCHHHHHHhC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCChHhEE
Confidence            99999988999999774   47888888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       161 ~~------------------------------------------------------------------------------  162 (364)
T 3qyz_A          161 LN------------------------------------------------------------------------------  162 (364)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             EC------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeec-CCCCCccceeeeeeeeEee
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l  307 (351)
                                       ..+.+||+|||++......      .....||+.|+|||++.+ ..++.++|+||+||++|+|
T Consensus       163 -----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el  225 (364)
T 3qyz_A          163 -----------------TTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEM  225 (364)
T ss_dssp             -----------------TTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHH
Confidence                             2356999999998763321      244689999999998765 4579999999999999999


Q ss_pred             ccccccccccCCCcee
Q psy2006         308 YLGITLMARKTKTKYF  323 (351)
Q Consensus       308 ~tG~~pf~~~~~~~~~  323 (351)
                      ++|..||.+.+..+.+
T Consensus       226 l~g~~pf~~~~~~~~~  241 (364)
T 3qyz_A          226 LSNRPIFPGKHYLDQL  241 (364)
T ss_dssp             HHSSCSSCCSSGGGHH
T ss_pred             HHCCCCCCCCChHHHH
Confidence            9999999888766544

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=3e-34  Score=271.12  Aligned_cols=196  Identities=12%  Similarity=0.054  Sum_probs=149.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeee-------eeEeeC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKML-------DWFDYH   70 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~-------~~f~~~   70 (351)
                      ++||+|+||+||+|.+..+++.||+|++...    ....+.+.+|+.+++.|.+.|++    |++++       +.+...
T Consensus        68 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~----iv~~~~~~~~p~d~~~~~  143 (371)
T 3q60_A           68 EPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPE----EARDRRRLLLPSDAVAVQ  143 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC--------------CBCCCCEEEEET
T ss_pred             eeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChh----hhhhceeEEeeehheecC
Confidence            5799999999999999999999999999863    34455677887777777532222    77755       555443


Q ss_pred             C-----------------eEEEEEeccCCCHHHHHHhcCCCCCchHHH------HHHHHHHHHhhhcCCCCCchHHHHHH
Q psy2006          71 G-----------------HMCIAFEILGLSVFDFLKENNYLPYSLDQV------RHMSYQLIYAKENNYLPYSLDQVRHM  127 (351)
Q Consensus        71 ~-----------------~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~------~~~~~ql~~~~~~~~~~~~~~~~~~~  127 (351)
                      +                 ++||||||++++|.+++...+. .++....      ..++.|++.|                
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~-~~~~~~~~~~~vk~~i~~qi~~a----------------  206 (371)
T 3q60_A          144 SQPPFAQLSPGQDDYAVANYLLLMPAASVDLELLFSTLDF-VYVFRGDEGILALHILTAQLIRL----------------  206 (371)
T ss_dssp             TSCSSSBCSCC---CCEEEEEEEECCCSEEHHHHHHHHHH-SCCCCHHHHHHHHHHHHHHHHHH----------------
T ss_pred             CCCCeeeccCCcccceeeeEEEEecCCCCCHHHHHHHhcc-ccchhhhhhhhhHHHHHHHHHHH----------------
Confidence            3                 4899999999999999987531 2333333      3444666666                


Q ss_pred             hHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCC
Q psy2006         128 SYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPS  207 (351)
Q Consensus       128 ~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~  207 (351)
                             |+|||++|++|||+|+.||.+.                                                   
T Consensus       207 -------L~~LH~~~ivHrDikp~NIll~---------------------------------------------------  228 (371)
T 3q60_A          207 -------AANLQSKGLVHGHFTPDNLFIM---------------------------------------------------  228 (371)
T ss_dssp             -------HHHHHHTTEEETTCSGGGEEEC---------------------------------------------------
T ss_pred             -------HHHHHHCCCccCcCCHHHEEEC---------------------------------------------------
Confidence                   9999999999999999999886                                                   


Q ss_pred             CCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeee
Q psy2006         208 ERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVIL  287 (351)
Q Consensus       208 ~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~  287 (351)
                                                                  ..+.+||+|||++...........+|+.|+|||++.
T Consensus       229 --------------------------------------------~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~  264 (371)
T 3q60_A          229 --------------------------------------------PDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLN  264 (371)
T ss_dssp             --------------------------------------------TTSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHT
T ss_pred             --------------------------------------------CCCCEEEEecceeeecCCCccCccCCcCCcChhhcc
Confidence                                                        235699999999987655444566779999999998


Q ss_pred             c--CCCCCccceeeeeeeeEeeccccccccccCCC
Q psy2006         288 E--LGWAQPCDVWSIGCIIFELYLGITLMARKTKT  320 (351)
Q Consensus       288 ~--~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~  320 (351)
                      +  ..++.++|+|||||++|+|++|..||.+.+..
T Consensus       265 ~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~  299 (371)
T 3q60_A          265 ASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPG  299 (371)
T ss_dssp             CSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTT
T ss_pred             CCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcc
Confidence            7  67899999999999999999999999887543

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.98  E-value=6.7e-34  Score=256.14  Aligned_cols=196  Identities=17%  Similarity=0.207  Sum_probs=166.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|.+. +++.||+|++.......+.+.+|+++++.++|+|      |+++++++...+..++||||+ 
T Consensus        14 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~~   86 (268)
T 3sxs_A           14 KELGSGQFGVVKLGKWK-GQYDVAVKMIKEGSMSEDEFFQEAQTMMKLSHPK------LVKFYGVCSKEYPIYIVTEYIS   86 (268)
T ss_dssp             EEEEEETTEEEEEEEET-TTEEEEEEEECBTTBCHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSEEEEEECCT
T ss_pred             eeeccCCCceEEEEEec-CceeEEEEEeccCCCcHHHHHHHHHHHHhCCCCC------EeeEEEEEccCCceEEEEEccC
Confidence            67999999999999864 6778999999876555677899999999999877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..+++..+..++.|++.+                       |.|||++|++|||+|+.|+.+.    
T Consensus        87 ~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~i~H~dikp~Nil~~----  138 (268)
T 3sxs_A           87 NGCLLNYLRSHG-KGLEPSQLLEMCYDVCEG-----------------------MAFLESHQFIHRDLAARNCLVD----  138 (268)
T ss_dssp             TCBHHHHHHHHG-GGCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEEESSCSGGGEEEC----
T ss_pred             CCcHHHHHHHcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCcCcceEEEC----
Confidence            899999998764 247788888888888887                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (268)
T 3sxs_A          139 --------------------------------------------------------------------------------  138 (268)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....++|+|||++......    .....+|+.|+|||.+.+..++.++|+||+||+++++++ |..||.
T Consensus       139 -----------~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  207 (268)
T 3sxs_A          139 -----------RDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYD  207 (268)
T ss_dssp             -----------TTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             -----------CCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCcc
Confidence                       2356999999998753221    123445678999999988889999999999999999999 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      ..+..+..
T Consensus       208 ~~~~~~~~  215 (268)
T 3sxs_A          208 LYTNSEVV  215 (268)
T ss_dssp             TSCHHHHH
T ss_pred             ccChHHHH
Confidence            87766554

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.98  E-value=6.4e-34  Score=268.93  Aligned_cols=193  Identities=24%  Similarity=0.462  Sum_probs=161.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE-----
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM-----   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~-----   73 (351)
                      ++||+|+||+||+|.+..+++.||+|++...   ....+.+.+|+.+++.++|+|      |++++++|...+..     
T Consensus        48 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~~~~~  121 (371)
T 4exu_A           48 THVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHEN------VIGLLDVFTPASSLRNFYD  121 (371)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTT------BCCCSEEECSCSSSTTCCC
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCC------chhhhhheeccCCccccee
Confidence            5799999999999999999999999999753   233567789999999999877      99999999887754     


Q ss_pred             -EEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 -CIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 -~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                       |+||||++++|.+++..    .+++..++.++.|++.|                       |.|||++|++|||+|+.|
T Consensus       122 ~~lv~e~~~~~l~~~~~~----~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~Dikp~N  174 (371)
T 4exu_A          122 FYLVMPFMQTDLQKIMGM----EFSEEKIQYLVYQMLKG-----------------------LKYIHSAGVVHRDLKPGN  174 (371)
T ss_dssp             CEEEEECCCEEHHHHTTS----CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGG
T ss_pred             EEEEEccccccHHHHhhc----CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCcCCCcCHHH
Confidence             99999999899888743    47888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       175 Ill~----------------------------------------------------------------------------  178 (371)
T 4exu_A          175 LAVN----------------------------------------------------------------------------  178 (371)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             eEEC----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                         ..+.+||+|||++...........||+.|+|||++.+ ..++.++|+|||||++|+|++|.
T Consensus       179 -------------------~~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~  239 (371)
T 4exu_A          179 -------------------EDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK  239 (371)
T ss_dssp             -------------------TTCCEEECSTTCC--------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------CCCCEEEEecCcccccccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCC
Confidence                               2356999999999876666667789999999999987 67899999999999999999999


Q ss_pred             ccccccCCCce
Q psy2006         312 TLMARKTKTKY  322 (351)
Q Consensus       312 ~pf~~~~~~~~  322 (351)
                      .||.+.+..+.
T Consensus       240 ~pf~~~~~~~~  250 (371)
T 4exu_A          240 TLFKGKDYLDQ  250 (371)
T ss_dssp             CSCCCSSHHHH
T ss_pred             CCCCCCChHHH
Confidence            99988765443

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.98  E-value=7.7e-34  Score=257.41  Aligned_cols=196  Identities=16%  Similarity=0.275  Sum_probs=166.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|.+..+++.||+|++....    .....+.+|+.+++.++|+|      |++++++|...+..++||
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~   88 (279)
T 3fdn_A           15 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPN------ILRLYGYFHDATRVYLIL   88 (279)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             eEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCC------CcchhheEecCCEEEEEE
Confidence            57999999999999999999999999996532    22456788999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..+..++.|++.+                       |.|||++|++|+|+|+.||.+.
T Consensus        89 e~~~~~~l~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~LH~~~i~H~dlkp~Nili~  143 (279)
T 3fdn_A           89 EYAPLGTVYRELQKLS--KFDEQRTATYITELANA-----------------------LSYCHSKRVIHRDIKPENLLLG  143 (279)
T ss_dssp             CCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHTTTCEECCCCGGGEEEC
T ss_pred             ecCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEecccCChHhEEEc
Confidence            999 789999998765  57888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (279)
T 3fdn_A          144 --------------------------------------------------------------------------------  143 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                     ..+.++|+|||++.... .......|++.|+|||.+.+..++.++|+||+||+++++++|..||.
T Consensus       144 ---------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  208 (279)
T 3fdn_A          144 ---------------SAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE  208 (279)
T ss_dssp             ---------------TTSCEEECSCCEESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ---------------CCCCEEEEeccccccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCC
Confidence                           23569999999876532 23345678999999999988888999999999999999999999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      ..+..+.+
T Consensus       209 ~~~~~~~~  216 (279)
T 3fdn_A          209 ANTYQETY  216 (279)
T ss_dssp             CSSHHHHH
T ss_pred             CCcHHHHH
Confidence            87655543

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.98  E-value=8.1e-34  Score=266.77  Aligned_cols=194  Identities=23%  Similarity=0.294  Sum_probs=166.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||+|+||+||+|.+..+++.||+|++...  ....+.+.+|+++++.++|+|      |++++++|..+++.|+||||
T Consensus        39 ~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e~  112 (360)
T 3eqc_A           39 SELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY------IVGFYGAFYSDGEISICMEH  112 (360)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTT------BCCEEEEEEETTEEEEEECC
T ss_pred             eeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCC------EEEEeEEEEECCEEEEEEEC
Confidence            5799999999999999989999999999753  344567889999999998877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCeEEee
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDIRLID  157 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni~l~D  157 (351)
                      + +++|.+++....  .+++..+..++.|++.+                       |.|||++ |++|||+|+.||.+. 
T Consensus       113 ~~~~~L~~~l~~~~--~~~~~~~~~i~~~i~~~-----------------------l~~lh~~~~i~H~dlkp~Nil~~-  166 (360)
T 3eqc_A          113 MDGGSLDQVLKKAG--RIPEQILGKVSIAVIKG-----------------------LTYLREKHKIMHRDVKPSNILVN-  166 (360)
T ss_dssp             CTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHHHCCCCSCCSGGGEEEC-
T ss_pred             CCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHhCCEEcCCccHHHEEEC-
Confidence            9 889999998865  57888888888888888                       9999996 899999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       167 --------------------------------------------------------------------------------  166 (360)
T 3eqc_A          167 --------------------------------------------------------------------------------  166 (360)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCccee-ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFD-DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                    ....++|+|||++... ........||+.|+|||++.+..++.++|+|||||++|+|++|..||..
T Consensus       167 --------------~~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~  232 (360)
T 3eqc_A          167 --------------SRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPP  232 (360)
T ss_dssp             --------------TTCCEEECCCCCCHHHHHHC----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSC
T ss_pred             --------------CCCCEEEEECCCCcccccccccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                          2356999999998653 2334456899999999999998999999999999999999999999987


Q ss_pred             cCCCc
Q psy2006         317 KTKTK  321 (351)
Q Consensus       317 ~~~~~  321 (351)
                      .+..+
T Consensus       233 ~~~~~  237 (360)
T 3eqc_A          233 PDAKE  237 (360)
T ss_dssp             CCHHH
T ss_pred             CCHHH
Confidence            66443

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.98  E-value=5.3e-34  Score=271.86  Aligned_cols=197  Identities=17%  Similarity=0.231  Sum_probs=164.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC--eEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--HMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~--~~~lV~   77 (351)
                      +.||+|+||+||+|++..+++.||+|++....  ...+.+.+|+++|+.++|+|      |+++++++...+  +.|+||
T Consensus        15 ~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpn------Iv~~~~~~~~~~~~~~~lv~   88 (396)
T 4eut_A           15 DILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKN------IVKLFAIEEETTTRHKVLIM   88 (396)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTT------BCCEEEEEECTTTCCEEEEE
T ss_pred             EEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCC------CCeEEEeeccCCCCeeEEEE
Confidence            57999999999999999999999999997542  23466778999999999877      999999998766  899999


Q ss_pred             ecc-CCCHHHHHHhcCC-CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          78 EIL-GLSVFDFLKENNY-LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||+ +++|.+++..... ..+++..++.++.|++.|                       |+|||++|++|||+|+.||.+
T Consensus        89 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~Dlkp~NIll  145 (396)
T 4eut_A           89 EFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGG-----------------------MNHLRENGIVHRNIKPGNIMR  145 (396)
T ss_dssp             CCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEE
T ss_pred             ecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEECCcCHHHEEE
Confidence            999 8899999987532 237888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      ..           .                                                                  
T Consensus       146 ~~-----------~------------------------------------------------------------------  148 (396)
T 4eut_A          146 VI-----------G------------------------------------------------------------------  148 (396)
T ss_dssp             EE-----------C------------------------------------------------------------------
T ss_pred             ee-----------c------------------------------------------------------------------
Confidence            41           0                                                                  


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeec--------CCCCCccceeeeeeeeE
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILE--------LGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~--------~~~~~~~DiwslG~~l~  305 (351)
                                    ......+||+|||++....  .......||+.|+|||++.+        ..++.++|+|||||++|
T Consensus       149 --------------~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~  214 (396)
T 4eut_A          149 --------------EDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFY  214 (396)
T ss_dssp             --------------TTSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCceeEEEecCCCceEccCCCccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHH
Confidence                          0023568999999997632  23345679999999999875        46678999999999999


Q ss_pred             eeccccccccccC
Q psy2006         306 ELYLGITLMARKT  318 (351)
Q Consensus       306 ~l~tG~~pf~~~~  318 (351)
                      ++++|..||.+.+
T Consensus       215 el~tg~~Pf~~~~  227 (396)
T 4eut_A          215 HAATGSLPFRPFE  227 (396)
T ss_dssp             HHHHSSCSEECTT
T ss_pred             HHHHCCCCCCCCC
Confidence            9999999998654

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.98  E-value=8.5e-34  Score=257.50  Aligned_cols=196  Identities=17%  Similarity=0.225  Sum_probs=164.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|.+. +++.||+|++.......+.+.+|+++++.++|+|      |+++++++...+..|+||||+ 
T Consensus        30 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~~  102 (283)
T 3gen_A           30 KELGTGQFGVVKYGKWR-GQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK------LVQLYGVCTKQRPIFIITEYMA  102 (283)
T ss_dssp             EECC---CEEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHHTCCCTT------BCCEEEEECSSSSEEEEECCCT
T ss_pred             hhcCCCCCceEEEEEEc-CCCeEEEEEecCCCCCHHHHHHHHHHHhcCCCCC------EeeEEEEEecCCCeEEEEeccC
Confidence            67999999999999874 6778999999876555677889999999999877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..+++..+..++.|++.+                       |.|||++|++|+|+|+.|+.+.    
T Consensus       103 ~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~i~H~dikp~Nili~----  154 (283)
T 3gen_A          103 NGCLLNYLREMR-HRFQTQQLLEMCKDVCEA-----------------------MEYLESKQFLHRDLAARNCLVN----  154 (283)
T ss_dssp             TCBHHHHHHCGG-GCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSSCSGGGEEEC----
T ss_pred             CCcHHHHHHHhc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccCCCCccceEEEc----
Confidence            899999998743 257888888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (283)
T 3gen_A          155 --------------------------------------------------------------------------------  154 (283)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....++|+|||++.....    ......+|+.|+|||.+.+..++.++|+||+||++|++++ |..||.
T Consensus       155 -----------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~  223 (283)
T 3gen_A          155 -----------DQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYE  223 (283)
T ss_dssp             -----------TTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTT
T ss_pred             -----------CCCCEEEccccccccccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCcc
Confidence                       235699999999875322    1233456788999999998899999999999999999998 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      ..+..+..
T Consensus       224 ~~~~~~~~  231 (283)
T 3gen_A          224 RFTNSETA  231 (283)
T ss_dssp             TSCHHHHH
T ss_pred             ccChhHHH
Confidence            87755543

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.98  E-value=2.8e-33  Score=255.27  Aligned_cols=197  Identities=16%  Similarity=0.127  Sum_probs=162.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      +.||+|+||+||+|++..+++.||+|++.... ..+.+.+|+.+++.+.|.+.     |..+..++...+..++||||++
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~l~~l~~~~~-----i~~~~~~~~~~~~~~lv~e~~~   88 (296)
T 4hgt_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT-KHPQLHIESKIYKMMQGGVG-----IPTIRWCGAEGDYNVMVMELLG   88 (296)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEC----CCCHHHHHHHHHHHTTSTT-----CCCEEEEEEETTEEEEEEECCC
T ss_pred             eeecCCCCeEEEEEEEcCCCceEEEEeecccc-cchHHHHHHHHHHHhcCCCC-----CCeeeeecCCCCceEEEEEccC
Confidence            57999999999999999999999999986532 23457889999999987661     5555556677789999999999


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCc
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      ++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+..    
T Consensus        89 ~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~ivH~Dlkp~NIl~~~----  140 (296)
T 4hgt_A           89 PSLEDLFNFCS-RKFSLKTVLLLADQMISR-----------------------IEYIHSKNFIHRDVKPDNFLMGL----  140 (296)
T ss_dssp             CBHHHHHHHTT-SCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEECC----
T ss_pred             CCHHHHHHHhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHeeeec----
Confidence            99999998654 357888888888888888                       99999999999999999998840    


Q ss_pred             ccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhc
Q psy2006         162 TFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (351)
                             .                                                                        
T Consensus       141 -------~------------------------------------------------------------------------  141 (296)
T 4hgt_A          141 -------G------------------------------------------------------------------------  141 (296)
T ss_dssp             -------G------------------------------------------------------------------------
T ss_pred             -------c------------------------------------------------------------------------
Confidence                   0                                                                        


Q ss_pred             cchhhhhhhccccceeeeccCCcceecc----------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                               .....+||+|||++.....          ......||+.|+|||.+.+..++.++|+||+||++|++++|.
T Consensus       142 ---------~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  212 (296)
T 4hgt_A          142 ---------KKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS  212 (296)
T ss_dssp             ---------GGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ---------CCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCC
Confidence                     0245699999999875322          123567899999999999989999999999999999999999


Q ss_pred             ccccccCCC
Q psy2006         312 TLMARKTKT  320 (351)
Q Consensus       312 ~pf~~~~~~  320 (351)
                      .||.+.+..
T Consensus       213 ~pf~~~~~~  221 (296)
T 4hgt_A          213 LPWQGLKAA  221 (296)
T ss_dssp             CTTSSCCCS
T ss_pred             CCCcccchh
Confidence            999876544

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.98  E-value=2.2e-33  Score=255.26  Aligned_cols=199  Identities=16%  Similarity=0.195  Sum_probs=165.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh--------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK--------YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~--------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||+|+||+||+|.+..+++.||+|++.....        ..+.+.+|+.+++.++|+|      |+++++++....  
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~--   96 (287)
T 4f0f_A           25 KQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPN------IVKLYGLMHNPP--   96 (287)
T ss_dssp             EECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTT------BCCEEEEETTTT--
T ss_pred             hccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCC------chhhheeecCCC--
Confidence            579999999999999999999999999964321        1156789999999998877      999999997766  


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc--ccccccCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK--REVRRVRR  150 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~d~k~  150 (351)
                      ++||||+ +++|.+++.... ..+++..+..++.|++.+                       |.|||++|  ++|||+|+
T Consensus        97 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~l~~~-----------------------l~~lH~~~~~ivH~dikp  152 (287)
T 4f0f_A           97 RMVMEFVPCGDLYHRLLDKA-HPIKWSVKLRLMLDIALG-----------------------IEYMQNQNPPIVHRDLRS  152 (287)
T ss_dssp             EEEEECCTTCBHHHHHHCTT-SCCCHHHHHHHHHHHHHH-----------------------HHHHHTSSSCCBCSCCSG
T ss_pred             eEEEEecCCCCHHHHHhccc-CCccHHHHHHHHHHHHHH-----------------------HHHHHhCCCCeecCCCCc
Confidence            6999999 799999987654 367888888888888888                       99999999  99999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      .|+.+.+-|-                                                                      
T Consensus       153 ~Nil~~~~~~----------------------------------------------------------------------  162 (287)
T 4f0f_A          153 PNIFLQSLDE----------------------------------------------------------------------  162 (287)
T ss_dssp             GGEEESCCCT----------------------------------------------------------------------
T ss_pred             ceEEEeccCC----------------------------------------------------------------------
Confidence            9998862110                                                                      


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeee--cCCCCCccceeeeeeeeEeec
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVIL--ELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~DiwslG~~l~~l~  308 (351)
                                          .....+||+|||++...........||+.|+|||++.  ...++.++|+||+||++|+++
T Consensus       163 --------------------~~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~  222 (287)
T 4f0f_A          163 --------------------NAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTIL  222 (287)
T ss_dssp             --------------------TCSCCEEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHH
T ss_pred             --------------------CCceeEEeCCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHH
Confidence                                0123589999999987666666678999999999984  445688999999999999999


Q ss_pred             cccccccccCCCce
Q psy2006         309 LGITLMARKTKTKY  322 (351)
Q Consensus       309 tG~~pf~~~~~~~~  322 (351)
                      +|..||...+..+.
T Consensus       223 ~g~~pf~~~~~~~~  236 (287)
T 4f0f_A          223 TGEGPFDEYSYGKI  236 (287)
T ss_dssp             HSSCTTTTCCCCHH
T ss_pred             cCCCCCccccccHH
Confidence            99999988765554

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.98  E-value=1.2e-33  Score=260.30  Aligned_cols=193  Identities=19%  Similarity=0.269  Sum_probs=157.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|.+..+++.||+|++....    ...+.+.+|+.+++.+.|+|      |+++++++..++..|+||
T Consensus        40 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~  113 (309)
T 2h34_A           40 RLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPH------VVPIHDFGEIDGQLYVDM  113 (309)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTT------BCCEEEEEEETTEEEEEE
T ss_pred             EEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCC------eeEEEEEEeeCCeEEEEE
Confidence            57999999999999998899999999997542    22366789999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..+..++.|++.+                       |.|||++|++|+|+++.||.+.
T Consensus       114 e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~i~H~dlkp~NIl~~  168 (309)
T 2h34_A          114 RLINGVDLAAMLRRQG--PLAPPRAVAIVRQIGSA-----------------------LDAAHAAGATHRDVKPENILVS  168 (309)
T ss_dssp             ECCCCEEHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEEC
T ss_pred             EecCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCcCCcCCCChHHEEEc
Confidence            999 789999998764  57888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       169 --------------------------------------------------------------------------------  168 (309)
T 2h34_A          169 --------------------------------------------------------------------------------  168 (309)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                     ....++|+|||++.....    ......|++.|+|||.+.+..++.++|+|||||++|++++|..
T Consensus       169 ---------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~  233 (309)
T 2h34_A          169 ---------------ADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSP  233 (309)
T ss_dssp             ---------------TTSCEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSC
T ss_pred             ---------------CCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCC
Confidence                           235689999998865322    2234678999999999988889999999999999999999999


Q ss_pred             cccccCCC
Q psy2006         313 LMARKTKT  320 (351)
Q Consensus       313 pf~~~~~~  320 (351)
                      ||.+.+..
T Consensus       234 pf~~~~~~  241 (309)
T 2h34_A          234 PYQGDQLS  241 (309)
T ss_dssp             SSCSCHHH
T ss_pred             CCCCchHH
Confidence            99876543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.98  E-value=5.7e-34  Score=266.66  Aligned_cols=197  Identities=22%  Similarity=0.340  Sum_probs=164.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK------YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +.||+|+||+||+|.+..+++.||+|++.....      ..+.+.+|+++++.++|+|      |++++++|...++.++
T Consensus        16 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~l   89 (346)
T 1ua2_A           16 DFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN------IIGLLDAFGHKSNISL   89 (346)
T ss_dssp             EEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTT------BCCEEEEECCTTCCEE
T ss_pred             eEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCC------CCeEEEEEeeCCceEE
Confidence            579999999999999988999999999975321      1235678999999999877      9999999999999999


Q ss_pred             EEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          76 AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      ||||+.++|.+++.... ..+++..++.++.|++.|                       |.|||++|++|||+|+.||.+
T Consensus        90 v~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~Dlkp~Nil~  145 (346)
T 1ua2_A           90 VFDFMETDLEVIIKDNS-LVLTPSHIKAYMLMTLQG-----------------------LEYLHQHWILHRDLKPNNLLL  145 (346)
T ss_dssp             EEECCSEEHHHHHTTCC-SSCCSSHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGGEEE
T ss_pred             EEEcCCCCHHHHHHhcC-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEECCCCCHHHEEE
Confidence            99999889999987654 457788888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       146 ~-------------------------------------------------------------------------------  146 (346)
T 1ua2_A          146 D-------------------------------------------------------------------------------  146 (346)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                      ..+.+||+|||++....   .......||+.|+|||++.+. .++.++|+|||||++|+|++|.
T Consensus       147 ----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~  210 (346)
T 1ua2_A          147 ----------------ENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRV  210 (346)
T ss_dssp             ----------------TTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ----------------CCCCEEEEecccceeccCCcccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCC
Confidence                            23569999999987532   223456789999999998764 5788999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      +||.+.+..+.+
T Consensus       211 ~~~~~~~~~~~~  222 (346)
T 1ua2_A          211 PFLPGDSDLDQL  222 (346)
T ss_dssp             CSSCCSSHHHHH
T ss_pred             CCCCCCCHHHHH
Confidence            999887765443

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.98  E-value=1.4e-33  Score=262.89  Aligned_cols=220  Identities=16%  Similarity=0.187  Sum_probs=161.4

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|.+.     .+++.||+|++...  ....+.+.+|+.+++.++|+|      |+++++++...++.|
T Consensus        53 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~  126 (343)
T 1luf_A           53 RDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPN------IVKLLGVCAVGKPMC  126 (343)
T ss_dssp             EEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTT------BCCEEEEECSSSSCE
T ss_pred             eeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCC------EEEEEEEEccCCceE
Confidence            57999999999999987     34589999999753  233567889999999998877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++............-.. ..............+++..+..++.|++.||.|||++|++|||+|+.||
T Consensus       127 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NI  205 (343)
T 1luf_A          127 LLFEYMAYGDLNEFLRSMSPHTVCSLSHSD-LSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNC  205 (343)
T ss_dssp             EEEECCTTCBHHHHHHHTCC-----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGE
T ss_pred             EEEecCCCCcHHHHHHHhCccccccccccc-ccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceE
Confidence            999999 88999999875321000000000 0000000001112344555555555555559999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       206 l~~-----------------------------------------------------------------------------  208 (343)
T 1luf_A          206 LVG-----------------------------------------------------------------------------  208 (343)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EEC-----------------------------------------------------------------------------
Confidence            886                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                        ....+||+|||++....     .......+|+.|+|||++.+..++.++|+|||||++|+|+
T Consensus       209 ------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~  270 (343)
T 1luf_A          209 ------------------ENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIF  270 (343)
T ss_dssp             ------------------GGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHH
Confidence                              23579999999986522     1223456788999999999889999999999999999999


Q ss_pred             c-ccccccccCCCcee
Q psy2006         309 L-GITLMARKTKTKYF  323 (351)
Q Consensus       309 t-G~~pf~~~~~~~~~  323 (351)
                      + |..||.+.+..+..
T Consensus       271 t~g~~p~~~~~~~~~~  286 (343)
T 1luf_A          271 SYGLQPYYGMAHEEVI  286 (343)
T ss_dssp             TTTCCTTTTSCHHHHH
T ss_pred             hcCCCcCCCCChHHHH
Confidence            9 99999887765544

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.98  E-value=1.3e-33  Score=264.95  Aligned_cols=221  Identities=18%  Similarity=0.180  Sum_probs=165.8

Q ss_pred             ccccCcccceEEEEEE-----eecCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC-e
Q psy2006           2 CSLNCVASNHVCTNVV-----YEVDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG-H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~-----~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~-~   72 (351)
                      ++||+|+||+||+|.+     ..+++.||+|++...  ....+.+.+|+++|+++ .|+|      |+++++++...+ .
T Consensus        28 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpn------iv~~~~~~~~~~~~  101 (359)
T 3vhe_A           28 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN------VVNLLGACTKPGGP  101 (359)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSTTSC
T ss_pred             eeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcc------eeeeeeeeecCCCc
Confidence            5799999999999994     346689999999753  23345688999999999 5566      999999998866 5


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHh----------------------------------------
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYA----------------------------------------  111 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~----------------------------------------  111 (351)
                      +++||||+ +++|.+++........+.......+.+....                                        
T Consensus       102 ~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (359)
T 3vhe_A          102 LMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEA  181 (359)
T ss_dssp             CEEEEECCTTEEHHHHHHTTTTSBCSCC----------------------------------------------------
T ss_pred             eEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhccc
Confidence            99999999 8899999987643221111111000000000                                        


Q ss_pred             -hhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhh
Q psy2006         112 -KENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEE  190 (351)
Q Consensus       112 -~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~  190 (351)
                       .......+++..+..++.|++.||.|||++|++|||+|+.||.+.                                  
T Consensus       182 ~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~----------------------------------  227 (359)
T 3vhe_A          182 PEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLS----------------------------------  227 (359)
T ss_dssp             --CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEC----------------------------------
T ss_pred             ccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEc----------------------------------
Confidence             000012377788888888888889999999999999999999886                                  


Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-  269 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-  269 (351)
                                                                                   ....+||+|||++..... 
T Consensus       228 -------------------------------------------------------------~~~~~kl~Dfg~a~~~~~~  246 (359)
T 3vhe_A          228 -------------------------------------------------------------EKNVVKICDFGLARDIYKD  246 (359)
T ss_dssp             -------------------------------------------------------------GGGCEEECCCGGGSCTTSC
T ss_pred             -------------------------------------------------------------CCCcEEEEeccceeeeccc
Confidence                                                                         235699999999865321 


Q ss_pred             ----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         270 ----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       270 ----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                          ......||+.|+|||++.+..++.++|||||||++|+|+| |..||.+.+..+.+
T Consensus       247 ~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~  305 (359)
T 3vhe_A          247 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF  305 (359)
T ss_dssp             TTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHH
T ss_pred             ccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHH
Confidence                2234667889999999999999999999999999999998 99999887765543

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.98  E-value=3e-33  Score=260.64  Aligned_cols=195  Identities=22%  Similarity=0.340  Sum_probs=168.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|.+..+++.||+|++...    ....+.+.+|+.+++.+.|+|      |+++++++...+++|+||
T Consensus        47 ~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~  120 (335)
T 2owb_A           47 RFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQH------VVGFHGFFEDNDFVFVVL  120 (335)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCC------CCeEEEEEecCCeEEEEE
Confidence            5799999999999999999999999999753    234567788999999998887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..+..++.|++.+                       |.|||++|++|||+|+.||.+.
T Consensus       121 e~~~~~~L~~~~~~~~--~l~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~dlkp~NIl~~  175 (335)
T 2owb_A          121 ELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLG-----------------------CQYLHRNRVIHRDLKLGNLFLN  175 (335)
T ss_dssp             CCCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGEEEC
T ss_pred             ecCCCCCHHHHHhccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCEecCCCchhEEEc
Confidence            999 789999988764  57788888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       176 --------------------------------------------------------------------------------  175 (335)
T 2owb_A          176 --------------------------------------------------------------------------------  175 (335)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ....++|+|||++....   .......||+.|+|||++.+..++.++|+|||||++|+|++|..|
T Consensus       176 ---------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p  240 (335)
T 2owb_A          176 ---------------EDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPP  240 (335)
T ss_dssp             ---------------TTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             ---------------CCCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCC
Confidence                           23568999999987532   223446789999999999888899999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |...+..+.
T Consensus       241 f~~~~~~~~  249 (335)
T 2owb_A          241 FETSCLKET  249 (335)
T ss_dssp             TCCSSHHHH
T ss_pred             CCCCCHHHH
Confidence            987665443

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.98  E-value=4.6e-33  Score=262.61  Aligned_cols=195  Identities=25%  Similarity=0.388  Sum_probs=165.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---------hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---------KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---------~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      ++||.|+||.||+|++..+|+.||||++....         ...+.+.+|+.+++.+ .|+|      |++++++|...+
T Consensus       100 ~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~------iv~~~~~~~~~~  173 (365)
T 2y7j_A          100 DVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPH------IITLIDSYESSS  173 (365)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTT------BCCEEEEEEBSS
T ss_pred             eEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCC------EeEEEEEEeeCC
Confidence            57999999999999998899999999996432         1245677899999999 6777      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      +.|+||||+ |++|.+++....  .+++..++.++.|++.|                       |.|||+.|++|+|+|+
T Consensus       174 ~~~lv~e~~~g~~L~~~l~~~~--~l~~~~~~~i~~qi~~~-----------------------L~~LH~~gi~H~Dlkp  228 (365)
T 2y7j_A          174 FMFLVFDLMRKGELFDYLTEKV--ALSEKETRSIMRSLLEA-----------------------VSFLHANNIVHRDLKP  228 (365)
T ss_dssp             EEEEEECCCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSG
T ss_pred             EEEEEEEeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCH
Confidence            999999999 889999998764  57788888888888888                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      +||.+.                                                                          
T Consensus       229 ~NIl~~--------------------------------------------------------------------------  234 (365)
T 2y7j_A          229 ENILLD--------------------------------------------------------------------------  234 (365)
T ss_dssp             GGEEEC--------------------------------------------------------------------------
T ss_pred             HHEEEC--------------------------------------------------------------------------
Confidence            999886                                                                          


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecC------CCCCccceeeeee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILEL------GWAQPCDVWSIGC  302 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~------~~~~~~DiwslG~  302 (351)
                                           ..+.++|+|||++....  .......||+.|+|||++.+.      .++.++|+|||||
T Consensus       235 ---------------------~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~  293 (365)
T 2y7j_A          235 ---------------------DNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGV  293 (365)
T ss_dssp             ---------------------TTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHH
T ss_pred             ---------------------CCCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHH
Confidence                                 23569999999887533  234557899999999998643      5788999999999


Q ss_pred             eeEeeccccccccccCCCce
Q psy2006         303 IIFELYLGITLMARKTKTKY  322 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~~~~~  322 (351)
                      ++|+|++|..||...+..+.
T Consensus       294 il~ell~g~~pf~~~~~~~~  313 (365)
T 2y7j_A          294 ILFTLLAGSPPFWHRRQILM  313 (365)
T ss_dssp             HHHHHHHSSCSSCCSSHHHH
T ss_pred             HHHHHHHCCCCCCCCCHHHH
Confidence            99999999999987665444

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.98  E-value=4.3e-34  Score=270.73  Aligned_cols=196  Identities=15%  Similarity=0.237  Sum_probs=165.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||+|+||+||+|.+..+++.||+|++...  ....+.+.+|+++|+.++|+|      |+++++++...+.+|+||||
T Consensus       120 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~~~~~~lv~e~  193 (377)
T 3cbl_A          120 EQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPN------IVRLIGVCTQKQPIYIVMEL  193 (377)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTT------BCCEEEEECSSSSCEEEEEC
T ss_pred             eEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCC------EEEEEEEEecCCCcEEEEEc
Confidence            5799999999999999889999999999753  223346778999999999887      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.++++..+ ..+++..+..++.|++.|                       |+|||++|++|||+|+.||.+.  
T Consensus       194 ~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~LH~~~ivHrDlkp~Nil~~--  247 (377)
T 3cbl_A          194 VQGGDFLTFLRTEG-ARLRVKTLLQMVGDAAAG-----------------------MEYLESKCCIHRDLAARNCLVT--  247 (377)
T ss_dssp             CTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEEC--
T ss_pred             CCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcCCcccCHHHEEEc--
Confidence            9 899999998754 246777777888877777                       9999999999999999999886  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       248 --------------------------------------------------------------------------------  247 (377)
T 3cbl_A          248 --------------------------------------------------------------------------------  247 (377)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecccc-----ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH-----STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GIT  312 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~-----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~  312 (351)
                                   ....+||+|||++.......     ....+++.|+|||++.+..++.++|+|||||++|++++ |..
T Consensus       248 -------------~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~  314 (377)
T 3cbl_A          248 -------------EKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGAS  314 (377)
T ss_dssp             -------------TTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCC
T ss_pred             -------------CCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence                         23569999999987532211     12234678999999988889999999999999999998 999


Q ss_pred             cccccCCCce
Q psy2006         313 LMARKTKTKY  322 (351)
Q Consensus       313 pf~~~~~~~~  322 (351)
                      ||.+.+..+.
T Consensus       315 p~~~~~~~~~  324 (377)
T 3cbl_A          315 PYPNLSNQQT  324 (377)
T ss_dssp             SSTTSCHHHH
T ss_pred             CCCCCCHHHH
Confidence            9988765544

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.98  E-value=1.4e-33  Score=254.86  Aligned_cols=193  Identities=22%  Similarity=0.259  Sum_probs=165.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||+|+||+||+|.+..+++.||+|++....  ...+.+.+|+.+++.++|+|      |+++++++...+..|+||||
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~   86 (276)
T 2yex_A           13 QTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN------VVKFYGHRREGNIQYLFLEY   86 (276)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTT------BCCEEEEEEETTEEEEEEEC
T ss_pred             EEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCC------ceeeeeEEEcCCEEEEEEEe
Confidence            57999999999999998899999999997532  33467889999999998877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++....  .+++..+..++.|++.+                       |.|||++|++|+|+++.|+.+.  
T Consensus        87 ~~~~~L~~~l~~~~--~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dl~p~Nil~~--  139 (276)
T 2yex_A           87 CSGGELFDRIEPDI--GMPEPDAQRFFHQLMAG-----------------------VVYLHGIGITHRDIKPENLLLD--  139 (276)
T ss_dssp             CTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEEC--
T ss_pred             cCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeccCCChHHEEEc--
Confidence            9 789999986543  57788888888888888                       9999999999999999999886  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (276)
T 2yex_A          140 --------------------------------------------------------------------------------  139 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeeecCCC-CCccceeeeeeeeEeeccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~  312 (351)
                                   ....++|+|||.+....     .......|++.|+|||.+.+..+ +.++|+||+||+++++++|..
T Consensus       140 -------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~  206 (276)
T 2yex_A          140 -------------ERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGEL  206 (276)
T ss_dssp             -------------TTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSC
T ss_pred             -------------cCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCC
Confidence                         23568999999986532     12345678999999999987775 778999999999999999999


Q ss_pred             cccccCCC
Q psy2006         313 LMARKTKT  320 (351)
Q Consensus       313 pf~~~~~~  320 (351)
                      ||...+..
T Consensus       207 p~~~~~~~  214 (276)
T 2yex_A          207 PWDQPSDS  214 (276)
T ss_dssp             CCSCSCTT
T ss_pred             CCCCCchH
Confidence            99876654

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.98  E-value=3e-33  Score=254.88  Aligned_cols=195  Identities=14%  Similarity=0.218  Sum_probs=164.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC----CeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH----GHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~----~~~~   74 (351)
                      ++||+|+||+||+|.+..+++.||+|++...   ....+.+.+|+.+++.++|+|      |++++++|...    .++|
T Consensus        32 ~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~  105 (290)
T 1t4h_A           32 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPN------IVRFYDSWESTVKGKKCIV  105 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTT------BCCEEEEEEEESSSCEEEE
T ss_pred             eeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCC------eeeeeeeeccccCCCceEE
Confidence            4699999999999999999999999999753   234566789999999999877      99999998763    4799


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc--ccccccCCC
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK--REVRRVRRC  151 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~d~k~~  151 (351)
                      +||||+ +++|.+++....  .+++..++.++.|++.|                       |.|||+++  ++|+|+|+.
T Consensus       106 lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~~~i~H~dikp~  160 (290)
T 1t4h_A          106 LVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKG-----------------------LQFLHTRTPPIIHRDLKCD  160 (290)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHTSSSCCCCSCCCGG
T ss_pred             EEEEecCCCCHHHHHHHcc--CCCHHHHHHHHHHHHHH-----------------------HHHHHcCCCCEEECCCCHH
Confidence            999999 889999998764  57788888888888888                       99999999  999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.+.+                                                                          
T Consensus       161 Nil~~~--------------------------------------------------------------------------  166 (290)
T 1t4h_A          161 NIFITG--------------------------------------------------------------------------  166 (290)
T ss_dssp             GEEESS--------------------------------------------------------------------------
T ss_pred             HEEEEC--------------------------------------------------------------------------
Confidence            998851                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceecc-ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                          ....++|+|||++..... ......||+.|+|||++. ..++.++|+||+||+++++++|
T Consensus       167 --------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g  225 (290)
T 1t4h_A          167 --------------------PTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATS  225 (290)
T ss_dssp             --------------------TTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHS
T ss_pred             --------------------CCCCEEEeeCCCcccccccccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhC
Confidence                                135699999999865333 334567899999999875 5689999999999999999999


Q ss_pred             cccccccCCCce
Q psy2006         311 ITLMARKTKTKY  322 (351)
Q Consensus       311 ~~pf~~~~~~~~  322 (351)
                      ..||........
T Consensus       226 ~~pf~~~~~~~~  237 (290)
T 1t4h_A          226 EYPYSECQNAAQ  237 (290)
T ss_dssp             SCTTTTCSSHHH
T ss_pred             CCCCCCcCcHHH
Confidence            999987554433

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.98  E-value=4.5e-33  Score=253.00  Aligned_cols=195  Identities=16%  Similarity=0.296  Sum_probs=168.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|.+..+++.||+|++....    ...+.+.+|+.+++.++|+|      |+++++++...+..++||
T Consensus        20 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~   93 (284)
T 2vgo_A           20 RPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPN------ILRMYNYFHDRKRIYLML   93 (284)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             heecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCC------EeeEEEEEEcCCEEEEEE
Confidence            57999999999999998899999999997532    22356788999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..+..++.|++.|                       |.|||++|++|+|+++.|+.+.
T Consensus        94 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl~p~Nil~~  148 (284)
T 2vgo_A           94 EFAPRGELYKELQKHG--RFDEQRSATFMEELADA-----------------------LHYCHERKVIHRDIKPENLLMG  148 (284)
T ss_dssp             CCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECCCCSGGGEEEC
T ss_pred             EeCCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceecCCCHHHEEEc
Confidence            999 789999998765  57888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       149 --------------------------------------------------------------------------------  148 (284)
T 2vgo_A          149 --------------------------------------------------------------------------------  148 (284)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc-ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                     ..+.++|+|||++..... ......|++.|+|||.+.+..++.++|+|||||++|++++|..||.
T Consensus       149 ---------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  213 (284)
T 2vgo_A          149 ---------------YKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFD  213 (284)
T ss_dssp             ---------------TTCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ---------------CCCCEEEecccccccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCC
Confidence                           234689999998865332 3345678999999999998889999999999999999999999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      ..+..+.
T Consensus       214 ~~~~~~~  220 (284)
T 2vgo_A          214 SPSHTET  220 (284)
T ss_dssp             CSSHHHH
T ss_pred             CCCHhHH
Confidence            7765544

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.98  E-value=2.2e-33  Score=260.91  Aligned_cols=195  Identities=22%  Similarity=0.333  Sum_probs=160.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +.||+|+||+||+|++..+++.||+|++....   ...+.+.+|+++++.++|+|      |+++++++...++.|+|||
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e  104 (331)
T 4aaa_A           31 GLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHEN------LVNLLEVCKKKKRWYLVFE  104 (331)
T ss_dssp             EEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEEEE
T ss_pred             eEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCC------EeeEEEEeecCCEEEEEEe
Confidence            57999999999999999999999999986432   33455778999999999877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++....  .+++..+..++.|++.|                       |.|||++|++|||+|+.||.+. 
T Consensus       105 ~~~~~~l~~~~~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~LH~~~ivH~dlkp~Nil~~-  158 (331)
T 4aaa_A          105 FVDHTILDDLELFPN--GLDYQVVQKYLFQIING-----------------------IGFCHSHNIIHRDIKPENILVS-  158 (331)
T ss_dssp             CCSEEHHHHHHHSTT--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGGEEEC-
T ss_pred             cCCcchHHHHHhhcc--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEccCcChheEEEc-
Confidence            99 666666654433  57888888888888888                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (331)
T 4aaa_A          159 --------------------------------------------------------------------------------  158 (331)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ..+.++|+|||++....   .......||+.|+|||++.+. .++.++|+||+||++|+|++|..|
T Consensus       159 --------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p  224 (331)
T 4aaa_A          159 --------------QSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPL  224 (331)
T ss_dssp             --------------TTSCEEECCCTTC------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             --------------CCCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCC
Confidence                          23579999999986532   223456789999999999775 679999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |.+.+..+.
T Consensus       225 f~~~~~~~~  233 (331)
T 4aaa_A          225 FPGDSDIDQ  233 (331)
T ss_dssp             CCCSSHHHH
T ss_pred             CCCCCcHHH
Confidence            988775544

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.98  E-value=3.3e-33  Score=263.28  Aligned_cols=194  Identities=11%  Similarity=0.064  Sum_probs=155.4

Q ss_pred             ccccCcccceEEEEEEeec-----CcEEEEEEecchhhhhHHHHHHHHH---------------HHHhCCCCCCCCccee
Q psy2006           2 CSLNCVASNHVCTNVVYEV-----DSVVALKIIKNVEKYREAARLEINA---------------LQKIGEKDPNGRHLCV   61 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~-----~~~vAiK~~~~~~~~~~~~~~E~~~---------------l~~l~h~~~~g~~~Iv   61 (351)
                      ++||+|+||+||+|.+..+     ++.||+|++....   ....+|+++               ++.+.|+|      |+
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~------iv  111 (364)
T 3op5_A           41 LPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDN---GPLFTELKFYQRAAKPEQIQKWIRTRKLKYLG------VP  111 (364)
T ss_dssp             EECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTC---HHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCC------SC
T ss_pred             EEEecCCCeEEEEeeecCccccccccceEEEEeeccc---hhHHHHHHHHHhhhhhHHHHHHHHHhhccCCC------CC
Confidence            5799999999999998664     5899999997542   223344444               44445555      99


Q ss_pred             eeeeeEeeC----CeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhc
Q psy2006          62 KMLDWFDYH----GHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY  137 (351)
Q Consensus        62 ~l~~~f~~~----~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  137 (351)
                      ++++++...    .+.||||||+|++|.+++.... ..+++..+..++.|++.|                       |.|
T Consensus       112 ~~~~~~~~~~~~~~~~~lv~e~~g~~L~~~~~~~~-~~l~~~~~~~i~~qi~~~-----------------------l~~  167 (364)
T 3op5_A          112 KYWGSGLHDKNGKSYRFMIMDRFGSDLQKIYEANA-KRFSRKTVLQLSLRILDI-----------------------LEY  167 (364)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECEEEEHHHHHHHTT-SCCCHHHHHHHHHHHHHH-----------------------HHH
T ss_pred             eEEeeeeeccCCcceEEEEEeCCCCCHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------HHH
Confidence            999999875    4799999999999999998753 468888888888888888                       999


Q ss_pred             cccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         138 NNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       138 lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      ||++|++|||+|+.||.+..                                                            
T Consensus       168 lH~~~iiHrDlkp~Nill~~------------------------------------------------------------  187 (364)
T 3op5_A          168 IHEHEYVHGDIKASNLLLNY------------------------------------------------------------  187 (364)
T ss_dssp             HHHTTEECCCCCGGGEEEES------------------------------------------------------------
T ss_pred             HHHCCeEEecCCHHHEEEec------------------------------------------------------------
Confidence            99999999999999998861                                                            


Q ss_pred             CCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc----------ccccccccceeeCceeee
Q psy2006         218 HPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHYRAPEVIL  287 (351)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~  287 (351)
                                                       .....+||+|||++.....          ......||+.|+|||++.
T Consensus       188 ---------------------------------~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  234 (364)
T 3op5_A          188 ---------------------------------KNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHN  234 (364)
T ss_dssp             ---------------------------------SCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHT
T ss_pred             ---------------------------------CCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhC
Confidence                                             0135799999999865221          113355999999999999


Q ss_pred             cCCCCCccceeeeeeeeEeeccccccccccCCCc
Q psy2006         288 ELGWAQPCDVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       288 ~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                      +..++.++|||||||++|+|+||..||.+.....
T Consensus       235 ~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~~~  268 (364)
T 3op5_A          235 GVAPSRRGDLEILGYCMIQWLTGHLPWEDNLKDP  268 (364)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTCH
T ss_pred             CCCCCchhhHHHHHHHHHHHHhCCCCccccccCH
Confidence            8889999999999999999999999999765443

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.98  E-value=7.3e-33  Score=252.87  Aligned_cols=195  Identities=22%  Similarity=0.340  Sum_probs=168.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|.+..+++.||+|++...    ....+.+.+|+.+++.+.|+|      |+++++++...+..++||
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~   94 (294)
T 2rku_A           21 RFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQH------VVGFHGFFEDNDFVFVVL   94 (294)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCC------EeeeeeeeccCCEEEEEE
Confidence            5799999999999999989999999999753    234566788999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..+..++.|++.|                       |.|||++|++|+|+++.||.+.
T Consensus        95 e~~~~~~L~~~~~~~~--~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~i~H~dl~p~Nil~~  149 (294)
T 2rku_A           95 ELCRRRSLLELHKRRK--ALTEPEARYYLRQIVLG-----------------------CQYLHRNRVIHRDLKLGNLFLN  149 (294)
T ss_dssp             ECCTTCBHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEEC
T ss_pred             ecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCChHhEEEc
Confidence            999 789999988764  57888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (294)
T 2rku_A          150 --------------------------------------------------------------------------------  149 (294)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ....++|+|||++....   .......||+.|+|||.+.+..++.++|+||+||++++|++|..|
T Consensus       150 ---------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p  214 (294)
T 2rku_A          150 ---------------EDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPP  214 (294)
T ss_dssp             ---------------TTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCT
T ss_pred             ---------------CCCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCC
Confidence                           23568999999987532   223446789999999999888899999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |...+..+.
T Consensus       215 ~~~~~~~~~  223 (294)
T 2rku_A          215 FETSCLKET  223 (294)
T ss_dssp             TCCSSHHHH
T ss_pred             CCCCCHHHH
Confidence            988765443

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.98  E-value=2.4e-33  Score=259.45  Aligned_cols=196  Identities=18%  Similarity=0.223  Sum_probs=165.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+||+||+|.+ .+++.||+|++.... ...+.+.+|+.+++.++|+|      |+++++++...++.++||||+
T Consensus        45 ~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e~~  117 (321)
T 2qkw_B           45 FLIGHGVFGKVYKGVL-RDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPH------LVSLIGFCDERNEMILIYKYM  117 (321)
T ss_dssp             CCSCBCSSSEEEEEEC-TTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTT------BCCEEEECCCTTCCEEEEECC
T ss_pred             ceeecCCCeeEEEEEE-CCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCC------EeeEEEEEcCCCeEEEEEEcC
Confidence            5799999999999996 478999999987532 33567889999999999877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCC--CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          81 -GLSVFDFLKENNY--LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        81 -g~sL~~~l~~~~~--~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                       +++|.+++.....  ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+. 
T Consensus       118 ~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~ivH~dlkp~Nil~~-  173 (321)
T 2qkw_B          118 ENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARG-----------------------LHYLHTRAIIHRDVKSINILLD-  173 (321)
T ss_dssp             TTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCSTTEEEC-
T ss_pred             CCCcHHHHHhccCCCccccCHHHHHHHHHHHHHH-----------------------HHHhcCCCeecCCCCHHHEEEC-
Confidence             8899999876532  247777788888888777                       9999999999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       174 --------------------------------------------------------------------------------  173 (321)
T 2qkw_B          174 --------------------------------------------------------------------------------  173 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                    ....+||+|||++.....     ......||+.|+|||.+.+..++.++|+|||||++|++++|..
T Consensus       174 --------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~  239 (321)
T 2qkw_B          174 --------------ENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARS  239 (321)
T ss_dssp             --------------TTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCT
T ss_pred             --------------CCCCEEEeecccccccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCC
Confidence                          235789999999865321     1234568999999999988889999999999999999999999


Q ss_pred             cccccCCCce
Q psy2006         313 LMARKTKTKY  322 (351)
Q Consensus       313 pf~~~~~~~~  322 (351)
                      ||.+....+.
T Consensus       240 p~~~~~~~~~  249 (321)
T 2qkw_B          240 AIVQSLPREM  249 (321)
T ss_dssp             TCSCSSSSSC
T ss_pred             cccccCcHHH
Confidence            9988765544

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.98  E-value=4.6e-33  Score=264.09  Aligned_cols=198  Identities=19%  Similarity=0.263  Sum_probs=165.1

Q ss_pred             ccccCcccceEEEEEEeec-------CcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYEV-------DSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~-------~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      ++||+|+||+||+|.+...       ++.||+|++...  ......+.+|+++++.+ +|+|      |+++++++...+
T Consensus        75 ~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpn------Iv~~~~~~~~~~  148 (382)
T 3tt0_A           75 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN------IINLLGACTQDG  148 (382)
T ss_dssp             EEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSSS
T ss_pred             eEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCch------hhhheeeeccCC
Confidence            5799999999999997643       358999999754  23346778999999999 7777      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhh
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD  136 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~  136 (351)
                      ..|+||||+ +++|.+++.....              ..+++..+..++.|++.|                       |.
T Consensus       149 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~a-----------------------L~  205 (382)
T 3tt0_A          149 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARG-----------------------ME  205 (382)
T ss_dssp             SCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHH-----------------------HH
T ss_pred             ceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHH-----------------------HH
Confidence            999999999 8899999988642              246777777777777777                       99


Q ss_pred             ccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhh
Q psy2006         137 YNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEAL  216 (351)
Q Consensus       137 ~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l  216 (351)
                      |||++|++|||+|+.||.+.                                                            
T Consensus       206 ~LH~~~ivH~Dlkp~NIll~------------------------------------------------------------  225 (382)
T 3tt0_A          206 YLASKKCIHRDLAARNVLVT------------------------------------------------------------  225 (382)
T ss_dssp             HHHHTTCCCSCCCGGGEEEC------------------------------------------------------------
T ss_pred             HHHhCCEecCCCCcceEEEc------------------------------------------------------------
Confidence            99999999999999999886                                                            


Q ss_pred             cCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCC
Q psy2006         217 RHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGW  291 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~  291 (351)
                                                         ....+||+|||++.....     ......+|+.|+|||++.+..+
T Consensus       226 -----------------------------------~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  270 (382)
T 3tt0_A          226 -----------------------------------EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY  270 (382)
T ss_dssp             -----------------------------------TTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCC
T ss_pred             -----------------------------------CCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCC
Confidence                                               235699999999875322     2234567889999999999899


Q ss_pred             CCccceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         292 AQPCDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       292 ~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +.++|||||||+++++++ |..||.+.+..+++
T Consensus       271 ~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~  303 (382)
T 3tt0_A          271 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF  303 (382)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH
T ss_pred             CchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            999999999999999999 99999887665544

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.98  E-value=4e-33  Score=258.13  Aligned_cols=197  Identities=18%  Similarity=0.276  Sum_probs=161.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEee------CCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDY------HGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~------~~~~~   74 (351)
                      +.||+|+||+||+|.+..+++.||+|++.......+.+.+|+.+++.+ .|+|      |++++++|..      .++++
T Consensus        30 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~~h~~------i~~~~~~~~~~~~~~~~~~~~  103 (326)
T 2x7f_A           30 ELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGDEEEEIKQEINMLKKYSHHRN------IATYYGAFIKKNPPGMDDQLW  103 (326)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSSTTHHHHHHHHHHHHHCCSTT------BCCEEEEEEECC--CCCCEEE
T ss_pred             EEeccCCCEEEEEEEECCCCCeEEEEEEecCcccHHHHHHHHHHHHhccCCCC------eeeeeeEEeeccCccccceEE
Confidence            579999999999999988999999999986555567888999999999 5666      9999999987      46899


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++.......+++..++.++.|++.|                       |.|||++|++|+|+++.||
T Consensus       104 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~ivH~dlkp~NI  160 (326)
T 2x7f_A          104 LVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRG-----------------------LSHLHQHKVIHRDIKGQNV  160 (326)
T ss_dssp             EEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCSGGGE
T ss_pred             EEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccccCCcHHHE
Confidence            999999 7799999987654567888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       161 l~~-----------------------------------------------------------------------------  163 (326)
T 2x7f_A          161 LLT-----------------------------------------------------------------------------  163 (326)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            886                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeee-----cCCCCCccceeeeeeeeE
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l~  305 (351)
                                        ....++|+|||++.....   ......||+.|+|||++.     +..++.++|+|||||++|
T Consensus       164 ------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~  225 (326)
T 2x7f_A          164 ------------------ENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAI  225 (326)
T ss_dssp             ------------------TTCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHH
T ss_pred             ------------------CCCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHH
Confidence                              235689999999865332   234567899999999987     456789999999999999


Q ss_pred             eeccccccccccCCCce
Q psy2006         306 ELYLGITLMARKTKTKY  322 (351)
Q Consensus       306 ~l~tG~~pf~~~~~~~~  322 (351)
                      +|++|..||.+.+..+.
T Consensus       226 ~l~~g~~p~~~~~~~~~  242 (326)
T 2x7f_A          226 EMAEGAPPLCDMHPMRA  242 (326)
T ss_dssp             HHHHSSCTTTTSCHHHH
T ss_pred             HHHhCCCCCCCCcHHHH
Confidence            99999999987664443

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.97  E-value=2.7e-33  Score=257.97  Aligned_cols=194  Identities=22%  Similarity=0.286  Sum_probs=163.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|.+..+++.||+|++... ...+.+.+|+.+++.+.|+|      |+++++++...+++|+||||+ 
T Consensus        35 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~~  107 (314)
T 3com_A           35 EKLGEGSYGSVYKAIHKETGQIVAIKQVPVE-SDLQEIIKEISIMQQCDSPH------VVKYYGSYFKNTDLWIVMEYCG  107 (314)
T ss_dssp             EECC----CEEEEEEETTTCCEEEEEEEETT-SCCHHHHHHHHHHHTCCCTT------BCCEEEEEEETTEEEEEEECCT
T ss_pred             eeeccCCCeEEEEEEECCCCCEEEEEecCch-HHHHHHHHHHHHHHhCCCCC------CccEEEEEEeCCEEEEEeecCC
Confidence            5799999999999999889999999999763 33467889999999998877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..+++..+..++.|++.|                       |.|||+.|++|+|+++.||.+.    
T Consensus       108 ~~~L~~~~~~~~-~~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~i~H~dl~p~Nil~~----  159 (314)
T 3com_A          108 AGSVSDIIRLRN-KTLTEDEIATILQSTLKG-----------------------LEYLHFMRKIHRDIKAGNILLN----  159 (314)
T ss_dssp             TEEHHHHHHHHT-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC----
T ss_pred             CCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCCcCCCcCHHHEEEC----
Confidence            779999997543 367888888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (314)
T 3com_A          160 --------------------------------------------------------------------------------  159 (314)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                 ..+.++|+|||++.....   ......|++.|+|||.+.+..++.++|+|||||++|+|++|..||...
T Consensus       160 -----------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~  228 (314)
T 3com_A          160 -----------TEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADI  228 (314)
T ss_dssp             -----------TTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTS
T ss_pred             -----------CCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCC
Confidence                       235689999999865432   234567899999999998888999999999999999999999999876


Q ss_pred             CCCc
Q psy2006         318 TKTK  321 (351)
Q Consensus       318 ~~~~  321 (351)
                      +..+
T Consensus       229 ~~~~  232 (314)
T 3com_A          229 HPMR  232 (314)
T ss_dssp             CHHH
T ss_pred             ChHH
Confidence            5443

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.9e-33  Score=264.20  Aligned_cols=193  Identities=21%  Similarity=0.285  Sum_probs=160.8

Q ss_pred             ccccCcccceEEEEEEe---ecCcEEEEEEecchh-----hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCCe
Q psy2006           2 CSLNCVASNHVCTNVVY---EVDSVVALKIIKNVE-----KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHGH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~~-----~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~~   72 (351)
                      ++||+|+||+||+|++.   .+++.||||++....     ...+.+.+|+++|+.+. |++      |+++++++...+.
T Consensus        60 ~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~------iv~~~~~~~~~~~  133 (355)
T 1vzo_A           60 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPF------LVTLHYAFQTETK  133 (355)
T ss_dssp             EEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTT------BCCEEEEEEETTE
T ss_pred             EEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCc------eeEEEEEEeeCce
Confidence            57999999999999984   489999999997432     23455678999999994 666      9999999999999


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +++||||+ +++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.
T Consensus       134 ~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivH~Dlkp~  188 (355)
T 1vzo_A          134 LHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLA-----------------------LEHLHKLGIIYRDIKLE  188 (355)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGG
T ss_pred             EEEEeecCCCCCHHHHHHHcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHH
Confidence            99999999 889999998765  57888888888888887                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.+.                                                                           
T Consensus       189 NIll~---------------------------------------------------------------------------  193 (355)
T 1vzo_A          189 NILLD---------------------------------------------------------------------------  193 (355)
T ss_dssp             GEEEC---------------------------------------------------------------------------
T ss_pred             HEEEC---------------------------------------------------------------------------
Confidence            99886                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceec----cccccccccceeeCceeeecC--CCCCccceeeeeeeeE
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD----EHHSTIVSTRHYRAPEVILEL--GWAQPCDVWSIGCIIF  305 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~----~~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwslG~~l~  305 (351)
                                          ....+||+|||++....    ......+||+.|+|||++.+.  .++.++|+|||||++|
T Consensus       194 --------------------~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~  253 (355)
T 1vzo_A          194 --------------------SNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMY  253 (355)
T ss_dssp             --------------------TTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHH
T ss_pred             --------------------CCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHH
Confidence                                23579999999986532    223346799999999999853  4688999999999999


Q ss_pred             eeccccccccccCCC
Q psy2006         306 ELYLGITLMARKTKT  320 (351)
Q Consensus       306 ~l~tG~~pf~~~~~~  320 (351)
                      +|++|..||...+..
T Consensus       254 ell~g~~pf~~~~~~  268 (355)
T 1vzo_A          254 ELLTGASPFTVDGEK  268 (355)
T ss_dssp             HHHHSSCTTSCTTSC
T ss_pred             HHHHCCCCCccCCcc
Confidence            999999999865443

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.97  E-value=2.6e-33  Score=257.81  Aligned_cols=198  Identities=18%  Similarity=0.242  Sum_probs=161.9

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|.+.     .+++.||+|++...  ....+.+.+|+++++.++|+|      |+++++++...+..+
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~  102 (314)
T 2ivs_A           29 KTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPH------VIKLYGACSQDGPLL  102 (314)
T ss_dssp             EEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTT------BCCEEEEECSSSSCE
T ss_pred             eeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCc------eeeEEEEEecCCceE
Confidence            57999999999999984     34589999999753  234467789999999998877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCC----------------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhH
Q psy2006          75 IAFEIL-GLSVFDFLKENNY----------------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQL  131 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~----------------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~  131 (351)
                      +||||+ +++|.+++.....                      ..+++..+..++.|++.|                    
T Consensus       103 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~--------------------  162 (314)
T 2ivs_A          103 LIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQG--------------------  162 (314)
T ss_dssp             EEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHH--------------------
T ss_pred             EEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHH--------------------
Confidence            999999 8999999987642                      124444555555555555                    


Q ss_pred             HhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCC
Q psy2006         132 IYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERIS  211 (351)
Q Consensus       132 ~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t  211 (351)
                         |.|||++|++|||+|+.||.+.                                                       
T Consensus       163 ---l~~lH~~~ivH~dikp~NIli~-------------------------------------------------------  184 (314)
T 2ivs_A          163 ---MQYLAEMKLVHRDLAARNILVA-------------------------------------------------------  184 (314)
T ss_dssp             ---HHHHHHTTEECCCCSGGGEEEE-------------------------------------------------------
T ss_pred             ---HHHHHHCCCcccccchheEEEc-------------------------------------------------------
Confidence               9999999999999999999887                                                       


Q ss_pred             hhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceee
Q psy2006         212 LSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVI  286 (351)
Q Consensus       212 ~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~  286 (351)
                                                              ....+||+|||++.....     ......+|+.|+|||.+
T Consensus       185 ----------------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  224 (314)
T 2ivs_A          185 ----------------------------------------EGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESL  224 (314)
T ss_dssp             ----------------------------------------TTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHH
T ss_pred             ----------------------------------------CCCCEEEccccccccccccccceeccCCCCcccccChhhh
Confidence                                                    234699999999875322     12345667889999999


Q ss_pred             ecCCCCCccceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         287 LELGWAQPCDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       287 ~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      .+..++.++|+|||||++|+|++ |..||.+.+..+.+
T Consensus       225 ~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~  262 (314)
T 2ivs_A          225 FDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLF  262 (314)
T ss_dssp             HHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHH
T ss_pred             cCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence            88889999999999999999999 99999988776654

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.97  E-value=1.1e-33  Score=257.43  Aligned_cols=193  Identities=17%  Similarity=0.186  Sum_probs=148.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|.+..+++.||+|++....   ...+....+...++.+.|+|      |+++++++...++.|+|||
T Consensus        13 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------iv~~~~~~~~~~~~~lv~e   86 (290)
T 3fme_A           13 MELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPF------TVTFYGALFREGDVWICME   86 (290)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTT------BCCEEEEEECSSSEEEEEE
T ss_pred             HhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCe------EEEEeeeeeccCCEEEEEe
Confidence            67999999999999999999999999997532   22223334445577777776      9999999999999999999


Q ss_pred             ccCCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCeEE
Q psy2006          79 ILGLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDIRL  155 (351)
Q Consensus        79 ~~g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni~l  155 (351)
                      |++++|.+++...  ....+++..++.++.|++.|                       |.|||++ |++|||+|+.|+.+
T Consensus        87 ~~~~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~~i~H~dlkp~Nil~  143 (290)
T 3fme_A           87 LMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKA-----------------------LEHLHSKLSVIHRDVKPSNVLI  143 (290)
T ss_dssp             CCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHHSCCCCCCCSGGGCEE
T ss_pred             hhccchHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----------------------HHHHhhcCCeecCCCCHHHEEE
Confidence            9988998887653  33467888888888888888                       9999998 99999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       144 ~-------------------------------------------------------------------------------  144 (290)
T 3fme_A          144 N-------------------------------------------------------------------------------  144 (290)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceee----ecCCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVI----LELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~----~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                      ....+||+|||++.....  ......||+.|+|||.+    .+..++.++|+||+||+++++++
T Consensus       145 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~  208 (290)
T 3fme_A          145 ----------------ALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAI  208 (290)
T ss_dssp             ----------------TTCCEEBCCC---------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CCCCEEEeecCCcccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHH
Confidence                            235699999999875332  22345789999999996    45567889999999999999999


Q ss_pred             ccccccccC
Q psy2006         310 GITLMARKT  318 (351)
Q Consensus       310 G~~pf~~~~  318 (351)
                      |..||....
T Consensus       209 g~~p~~~~~  217 (290)
T 3fme_A          209 LRFPYDSWG  217 (290)
T ss_dssp             TSCSSCCCS
T ss_pred             CCCCccccC
Confidence            999997643

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.97  E-value=5.5e-33  Score=260.71  Aligned_cols=199  Identities=18%  Similarity=0.275  Sum_probs=154.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-------eE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-------HM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-------~~   73 (351)
                      .++||+|+||+||+|.+..+++.||||++...........+|++.++.+.|+|      |++++++|...+       ++
T Consensus        28 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~l~~l~h~n------iv~~~~~~~~~~~~~~~~~~~  101 (360)
T 3e3p_A           28 ERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDPRFRNRELQIMQDLAVLHHPN------IVQLQSYFYTLGERDRRDIYL  101 (360)
T ss_dssp             C----------CEEEEETTTCCEEEEEEEECCTTCCCHHHHHHHHHHHHCCTT------BCCEEEEEEEECSSCTTCEEE
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEecCccccHHHHHHHHHHHhcCCCC------cccHHHhhhccccccccceeE
Confidence            36899999999999999999999999999765544556677888889998887      999999997654       38


Q ss_pred             EEEEeccCCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccc--cccccccccC
Q psy2006          74 CIAFEILGLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN--KKKREVRRVR  149 (351)
Q Consensus        74 ~lV~E~~g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH--~~~i~h~d~k  149 (351)
                      |+||||++++|.+.+...  ....+++..++.++.|++.+                       |.|||  +.|++|||+|
T Consensus       102 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~~~ivH~Dlk  158 (360)
T 3e3p_A          102 NVVMEYVPDTLHRCCRNYYRRQVAPPPILIKVFLFQLIRS-----------------------IGCLHLPSVNVCHRDIK  158 (360)
T ss_dssp             EEEEECCSCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH-----------------------HHHHTSTTTCCBCSCCC
T ss_pred             EEEeecccccHHHHHHHHhhcccCCCHHHHHHHHHHHHHH-----------------------HHHHhCCCCCeecCcCC
Confidence            999999988887766542  33457777788888888777                       99999  9999999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      +.||.+.+                                                                        
T Consensus       159 p~NIll~~------------------------------------------------------------------------  166 (360)
T 3e3p_A          159 PHNVLVNE------------------------------------------------------------------------  166 (360)
T ss_dssp             GGGEEEET------------------------------------------------------------------------
T ss_pred             HHHEEEeC------------------------------------------------------------------------
Confidence            99998861                                                                        


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCC-CCCccceeeeeeeeEe
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFE  306 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~~l~~  306 (351)
                                            ....+||+|||++.....  ......||+.|+|||++.+.. ++.++|+|||||++|+
T Consensus       167 ----------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~e  224 (360)
T 3e3p_A          167 ----------------------ADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAE  224 (360)
T ss_dssp             ----------------------TTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHH
T ss_pred             ----------------------CCCcEEEeeCCCceecCCCCCcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHH
Confidence                                  135799999999876432  334567899999999987654 7999999999999999


Q ss_pred             eccccccccccCCCce
Q psy2006         307 LYLGITLMARKTKTKY  322 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~  322 (351)
                      |++|..||.+.+..+.
T Consensus       225 ll~g~~pf~~~~~~~~  240 (360)
T 3e3p_A          225 MMLGEPIFRGDNSAGQ  240 (360)
T ss_dssp             HHHSSCSSCCSSHHHH
T ss_pred             HHhCCCCcCCCChHHH
Confidence            9999999988765543

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.97  E-value=2.5e-33  Score=256.03  Aligned_cols=191  Identities=20%  Similarity=0.216  Sum_probs=158.8

Q ss_pred             ccccCcccceEEEEE----EeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeEE
Q psy2006           2 CSLNCVASNHVCTNV----VYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~----~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~~   74 (351)
                      ++||+|+||+||+|+    +..+++.||+|++... ....+.+.+|+++|+.++|+|      |+++++++...  .+++
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~   89 (295)
T 3ugc_A           16 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN------IVKYKGVCYSAGRRNLK   89 (295)
T ss_dssp             EEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTT------BCCEEEEECHHHHTSCE
T ss_pred             heeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCC------EeeEEEEEecCCCCceE
Confidence            679999999999998    5668999999999754 334467889999999999877      99999998654  4799


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.|+
T Consensus        90 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~Dikp~Ni  145 (295)
T 3ugc_A           90 LIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKG-----------------------MEYLGTKRYIHRDLATRNI  145 (295)
T ss_dssp             EEEECCTTCBHHHHHHHCG-GGCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGE
T ss_pred             EEEEeCCCCCHHHHHHhcc-cccCHHHHHHHHHHHHHH-----------------------HHHHhcCCcccCCCCHhhE
Confidence            999999 889999998764 247777788888888877                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       146 l~~-----------------------------------------------------------------------------  148 (295)
T 3ugc_A          146 LVE-----------------------------------------------------------------------------  148 (295)
T ss_dssp             EEE-----------------------------------------------------------------------------
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            887                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                        ....+||+|||++.....      ......+++.|+|||.+.+..++.++|+||+||++|++
T Consensus       149 ------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l  210 (295)
T 3ugc_A          149 ------------------NENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL  210 (295)
T ss_dssp             ------------------ETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHH
Confidence                              235699999999875322      12234567789999999999999999999999999999


Q ss_pred             cccccccccc
Q psy2006         308 YLGITLMARK  317 (351)
Q Consensus       308 ~tG~~pf~~~  317 (351)
                      +||..||...
T Consensus       211 ~~g~~~~~~~  220 (295)
T 3ugc_A          211 FTYIEKSKSP  220 (295)
T ss_dssp             HHTTCTTCSH
T ss_pred             HhcccccCCC
Confidence            9999998654

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.97  E-value=1.2e-32  Score=255.34  Aligned_cols=186  Identities=19%  Similarity=0.348  Sum_probs=159.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEee--CCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDY--HGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~--~~~~~lV~E   78 (351)
                      ++||+|+||+||+|++..+++.||+|++...  ..+.+.+|+.+|+.+. |+|      |+++++++..  ..+.++|||
T Consensus        42 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~--~~~~~~~E~~~l~~l~~~~~------i~~~~~~~~~~~~~~~~lv~e  113 (330)
T 3nsz_A           42 RKLGRGKYSEVFEAINITNNEKVVVKILKPV--KKKKIKREIKILENLRGGPN------IITLADIVKDPVSRTPALVFE  113 (330)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEECSC--CHHHHHHHHHHHHHHTTSTT------BCCEEEEEECTTTCCEEEEEE
T ss_pred             EEecccCCeEEEEEEECCCCcEEEEEEeccc--chHHHHHHHHHHHHcCCCCC------EEEeeeeeccCCCCceEEEEe
Confidence            6799999999999999999999999999753  2467889999999997 666      9999999998  568999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++..     +++..++.++.|++.|                       |.|||++|++|||+|+.||.+..
T Consensus       114 ~~~~~~l~~~~~~-----~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~Dikp~Nil~~~  165 (330)
T 3nsz_A          114 HVNNTDFKQLYQT-----LTDYDIRFYMYEILKA-----------------------LDYCHSMGIMHRDVKPHNVMIDH  165 (330)
T ss_dssp             CCCCCCHHHHGGG-----CCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEET
T ss_pred             ccCchhHHHHHHh-----CCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeeCCCCHHHEEEcC
Confidence            99 8899998754     6777788888888877                       99999999999999999998861


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       166 --------------------------------------------------------------------------------  165 (330)
T 3nsz_A          166 --------------------------------------------------------------------------------  165 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                    ....+||+|||++....  .......|++.|+|||.+.+ ..++.++|+|||||++|+|++|..||
T Consensus       166 --------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~  231 (330)
T 3nsz_A          166 --------------EHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPF  231 (330)
T ss_dssp             --------------TTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred             --------------CCCEEEEEeCCCceEcCCCCccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCc
Confidence                          12369999999997532  33455678999999999977 56899999999999999999999999


Q ss_pred             ccc
Q psy2006         315 ARK  317 (351)
Q Consensus       315 ~~~  317 (351)
                      ...
T Consensus       232 ~~~  234 (330)
T 3nsz_A          232 FHG  234 (330)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            543

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.97  E-value=1.3e-33  Score=273.93  Aligned_cols=196  Identities=20%  Similarity=0.234  Sum_probs=165.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|.+. .++.||||+++......+.+.+|+++|+.++|+|      |+++++++. .+.+|+||||+ 
T Consensus       194 ~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~l~~~~~-~~~~~lv~e~~~  265 (454)
T 1qcf_A          194 KKLGAGQFGEVWMATYN-KHTKVAVKTMKPGSMSVEAFLAEANVMKTLQHDK------LVKLHAVVT-KEPIYIITEFMA  265 (454)
T ss_dssp             EEEECCSSEEEEEEEET-TTEEEEEEEECTTSBCHHHHHHHHHHHTTCCCTT------BCCEEEEEC-SSSCEEEECCCT
T ss_pred             EEcccCCceEEEEEEEC-CccEEEEEEecCCCccHHHHHHHHHHHhhCCCCC------EeeEEEEEe-CCccEEEEeecC
Confidence            57999999999999973 5788999999876556678899999999999887      999999986 66899999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.++++......+++..+..++.|++.|                       |.|||+++++|||+|+.||.+.    
T Consensus       266 ~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~LH~~~ivHrDlkp~Nill~----  318 (454)
T 1qcf_A          266 KGSLLDFLKSDEGSKQPLPKLIDFSAQIAEG-----------------------MAFIEQRNYIHRDLRAANILVS----  318 (454)
T ss_dssp             TCBHHHHHHSHHHHTCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSSCSGGGEEEC----
T ss_pred             CCcHHHHHHhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccCCCCCHHHEEEC----
Confidence            8999999986543356777777777777777                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       319 --------------------------------------------------------------------------------  318 (454)
T 1qcf_A          319 --------------------------------------------------------------------------------  318 (454)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....+||+|||++.....    ......+++.|+|||++.+..++.++|+|||||++|+++| |..||.
T Consensus       319 -----------~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~  387 (454)
T 1qcf_A          319 -----------ASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYP  387 (454)
T ss_dssp             -----------TTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             -----------CCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCC
Confidence                       235799999999875322    1223445778999999998899999999999999999999 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+++
T Consensus       388 ~~~~~~~~  395 (454)
T 1qcf_A          388 GMSNPEVI  395 (454)
T ss_dssp             TCCHHHHH
T ss_pred             CCCHHHHH
Confidence            87766554

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.97  E-value=7.7e-33  Score=252.51  Aligned_cols=196  Identities=16%  Similarity=0.125  Sum_probs=162.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      +.||+|+||+||+|++..+++.||+|++.... ..+.+.+|+.+++.+.|.+.     |..+..++...+..++||||++
T Consensus        15 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~e~~~l~~l~~~~~-----i~~~~~~~~~~~~~~lv~e~~~   88 (296)
T 3uzp_A           15 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT-KHPQLHIESKIYKMMQGGVG-----IPTIRWCGAEGDYNVMVMELLG   88 (296)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEEESCS-SCCHHHHHHHHHHHHTTSTT-----CCCEEEEEEETTEEEEEEECCC
T ss_pred             EEEccCCCeEEEEEEEcCCCcEEEEEEecCCc-chhHHHHHHHHHHHhhcCCC-----CCccccccCCCCceEEEEEecC
Confidence            57999999999999999999999999987533 23457889999999987661     4455555567779999999999


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCc
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      ++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+..    
T Consensus        89 ~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~ivH~dlkp~NIl~~~----  140 (296)
T 3uzp_A           89 PSLEDLFNFCS-RKFSLKTVLLLADQMISR-----------------------IEYIHSKNFIHRDVKPDNFLMGL----  140 (296)
T ss_dssp             CBHHHHHHHTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGEEECC----
T ss_pred             CCHHHHHHhhc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeeCCCCHHHeEEec----
Confidence            99999998554 367888888888888888                       99999999999999999998850    


Q ss_pred             ccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhc
Q psy2006         162 TFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (351)
                             .                                                                        
T Consensus       141 -------~------------------------------------------------------------------------  141 (296)
T 3uzp_A          141 -------G------------------------------------------------------------------------  141 (296)
T ss_dssp             -------G------------------------------------------------------------------------
T ss_pred             -------C------------------------------------------------------------------------
Confidence                   0                                                                        


Q ss_pred             cchhhhhhhccccceeeeccCCcceeccc----------cccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDEH----------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                               .....+||+|||++......          .....||+.|+|||.+.+..++.++|+|||||++|++++|.
T Consensus       142 ---------~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~  212 (296)
T 3uzp_A          142 ---------KKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS  212 (296)
T ss_dssp             ---------GGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ---------CCCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCC
Confidence                     02356999999998753321          24567899999999999988999999999999999999999


Q ss_pred             ccccccCC
Q psy2006         312 TLMARKTK  319 (351)
Q Consensus       312 ~pf~~~~~  319 (351)
                      .||.+.+.
T Consensus       213 ~pf~~~~~  220 (296)
T 3uzp_A          213 LPWQGLKA  220 (296)
T ss_dssp             CTTSSCCC
T ss_pred             CCCCCcCc
Confidence            99987543

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.97  E-value=5.3e-33  Score=253.99  Aligned_cols=195  Identities=24%  Similarity=0.347  Sum_probs=165.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----------hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----------KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYH   70 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----------~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~   70 (351)
                      +.||+|+||.||+|.+..+++.||+|++....          ...+.+.+|+++++++. |+|      |+++++++...
T Consensus        23 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~------i~~~~~~~~~~   96 (298)
T 1phk_A           23 EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPN------IIQLKDTYETN   96 (298)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTT------BCCEEEEEECS
T ss_pred             eeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCC------EeeeeeeeccC
Confidence            57999999999999999999999999996431          23456788999999996 777      99999999999


Q ss_pred             CeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccC
Q psy2006          71 GHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR  149 (351)
Q Consensus        71 ~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k  149 (351)
                      ++.++||||+ +++|.+++....  .+++..+..++.|++.+                       |.|||++|++|+|++
T Consensus        97 ~~~~lv~e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl~  151 (298)
T 1phk_A           97 TFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEV-----------------------ICALHKLNIVHRDLK  151 (298)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCS
T ss_pred             CeEEEEEeccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCC
Confidence            9999999999 789999998764  57788888888888888                       999999999999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      +.||.+.                                                                         
T Consensus       152 p~Nil~~-------------------------------------------------------------------------  158 (298)
T 1phk_A          152 PENILLD-------------------------------------------------------------------------  158 (298)
T ss_dssp             GGGEEEC-------------------------------------------------------------------------
T ss_pred             cceEEEc-------------------------------------------------------------------------
Confidence            9999886                                                                         


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeee------cCCCCCccceeeee
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVIL------ELGWAQPCDVWSIG  301 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~------~~~~~~~~DiwslG  301 (351)
                                            ....++|+|||++....  .......|++.|+|||++.      ...++.++|+||||
T Consensus       159 ----------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG  216 (298)
T 1phk_A          159 ----------------------DDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTG  216 (298)
T ss_dssp             ----------------------TTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHH
T ss_pred             ----------------------CCCcEEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHH
Confidence                                  23568999999986532  2334567899999999886      34578899999999


Q ss_pred             eeeEeeccccccccccCCCce
Q psy2006         302 CIIFELYLGITLMARKTKTKY  322 (351)
Q Consensus       302 ~~l~~l~tG~~pf~~~~~~~~  322 (351)
                      |++++|++|..||...+..+.
T Consensus       217 ~~l~~l~~g~~p~~~~~~~~~  237 (298)
T 1phk_A          217 VIMYTLLAGSPPFWHRKQMLM  237 (298)
T ss_dssp             HHHHHHHHSSCSSCCSSHHHH
T ss_pred             HHHHHHHHCCCCCcCccHHHH
Confidence            999999999999987765544

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.97  E-value=1e-32  Score=252.94  Aligned_cols=194  Identities=25%  Similarity=0.344  Sum_probs=167.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      ++||+|+||+||+|.+..+++.||+|++....  ...+.+.+|+.+++.+.|+|      |+++++++...+..|+||||
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~  101 (303)
T 3a7i_A           28 EKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY------VTKYYGSYLKDTKLWIIMEY  101 (303)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEEEEC
T ss_pred             hhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCC------EeEEEEEEecCCeEEEEEEe
Confidence            67999999999999998999999999997542  34567889999999998877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      + +++|.+++...   .+++..+..++.|++.+                       |.|||++|++|+|+++.||.+.  
T Consensus       102 ~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl~p~Nil~~--  153 (303)
T 3a7i_A          102 LGGGSALDLLEPG---PLDETQIATILREILKG-----------------------LDYLHSEKKIHRDIKAANVLLS--  153 (303)
T ss_dssp             CTTEEHHHHHTTS---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC--
T ss_pred             CCCCcHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCccCCCChheEEEC--
Confidence            9 78999998653   57888888888888888                       9999999999999999999886  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (303)
T 3a7i_A          154 --------------------------------------------------------------------------------  153 (303)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   ..+.++|+|||++.....   ......||+.|+|||.+.+..++.++|+|||||++|++++|..||.
T Consensus       154 -------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~  220 (303)
T 3a7i_A          154 -------------EHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHS  220 (303)
T ss_dssp             -------------TTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             -------------CCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCC
Confidence                         235689999999865332   2345678999999999988889999999999999999999999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      ..+..+.
T Consensus       221 ~~~~~~~  227 (303)
T 3a7i_A          221 ELHPMKV  227 (303)
T ss_dssp             TSCHHHH
T ss_pred             CcCHHHH
Confidence            7655443

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.97  E-value=2.7e-33  Score=262.01  Aligned_cols=194  Identities=9%  Similarity=0.057  Sum_probs=155.8

Q ss_pred             ccccCcccceEEEEEEee---cCcEEEEEEecchhh------------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeee
Q psy2006           2 CSLNCVASNHVCTNVVYE---VDSVVALKIIKNVEK------------YREAARLEINALQKIGEKDPNGRHLCVKMLDW   66 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~---~~~~vAiK~~~~~~~------------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~   66 (351)
                      ++||+|+||+||+|.+..   +++.||+|++.....            ....+.+|+.+++.+.|+|      |++++++
T Consensus        43 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~n------i~~~~~~  116 (345)
T 2v62_A           43 KKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLG------IPLFYGS  116 (345)
T ss_dssp             EEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCC------CCCEEEE
T ss_pred             eeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccC------cceeecc
Confidence            579999999999999977   889999999975321            1223557788888888877      9999999


Q ss_pred             Eee----CCeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc
Q psy2006          67 FDY----HGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK  142 (351)
Q Consensus        67 f~~----~~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~  142 (351)
                      +..    ..+.|+||||++++|.+++....  .+++..+..++.|++.|                       |+|||++|
T Consensus       117 ~~~~~~~~~~~~lv~e~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~  171 (345)
T 2v62_A          117 GLTEFKGRSYRFMVMERLGIDLQKISGQNG--TFKKSTVLQLGIRMLDV-----------------------LEYIHENE  171 (345)
T ss_dssp             EEEESSSCEEEEEEEECEEEEHHHHCBGGG--BCCHHHHHHHHHHHHHH-----------------------HHHHHHTT
T ss_pred             cccccCCCcEEEEEEeccCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCC
Confidence            988    67999999999999999998765  67888888888888888                       99999999


Q ss_pred             ccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCC
Q psy2006         143 REVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFD  222 (351)
Q Consensus       143 i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~  222 (351)
                      ++|||+|+.||.+..-                                                                
T Consensus       172 ivH~Dlkp~NIll~~~----------------------------------------------------------------  187 (345)
T 2v62_A          172 YVHGDIKAANLLLGYK----------------------------------------------------------------  187 (345)
T ss_dssp             EECSCCSGGGEEEESS----------------------------------------------------------------
T ss_pred             eeCCCcCHHHEEEccC----------------------------------------------------------------
Confidence            9999999999998720                                                                


Q ss_pred             CCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc----------ccccccccceeeCceeeecCCCC
Q psy2006         223 KLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHYRAPEVILELGWA  292 (351)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~  292 (351)
                                                   ....+||+|||++.....          ......||+.|+|||++.+..++
T Consensus       188 -----------------------------~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  238 (345)
T 2v62_A          188 -----------------------------NPDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALS  238 (345)
T ss_dssp             -----------------------------STTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCC
T ss_pred             -----------------------------CCCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCC
Confidence                                         013699999999865321          12446789999999999988899


Q ss_pred             CccceeeeeeeeEeeccccccccccCC
Q psy2006         293 QPCDVWSIGCIIFELYLGITLMARKTK  319 (351)
Q Consensus       293 ~~~DiwslG~~l~~l~tG~~pf~~~~~  319 (351)
                      .++|+|||||++|+|++|..||.+...
T Consensus       239 ~~~Di~slG~il~ell~g~~pf~~~~~  265 (345)
T 2v62_A          239 RRSDVEILGYCMLRWLCGKLPWEQNLK  265 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCTTGGGTT
T ss_pred             chhhHHHHHHHHHHHHhCCCCcccccc
Confidence            999999999999999999999976443

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.2e-32  Score=255.49  Aligned_cols=198  Identities=24%  Similarity=0.272  Sum_probs=144.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEe--------eCC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFD--------YHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~--------~~~   71 (351)
                      ++||+|+||+||+|.+..+++.||+|++... ....+.+.+|+.+++.+. |+|      |+++++++.        ...
T Consensus        34 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~------iv~~~~~~~~~~~~~~~~~~  107 (337)
T 3ll6_A           34 RVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPN------IVQFCSAASIGKEESDTGQA  107 (337)
T ss_dssp             EEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTT------BCCEEEEEEECTTTSTTSSE
T ss_pred             EEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCC------hhhccccccccccccccCCc
Confidence            5799999999999999889999999998543 334566789999999996 777      999999994        333


Q ss_pred             eEEEEEeccCCCHHHHHHhc-CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc--cccccc
Q psy2006          72 HMCIAFEILGLSVFDFLKEN-NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK--REVRRV  148 (351)
Q Consensus        72 ~~~lV~E~~g~sL~~~l~~~-~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~d~  148 (351)
                      .+++||||++++|.+++... ....+++..+..++.|++.|                       |.|||++|  ++|||+
T Consensus       108 ~~~lv~e~~~g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~~~ivH~Di  164 (337)
T 3ll6_A          108 EFLLLTELCKGQLVEFLKKMESRGPLSCDTVLKIFYQTCRA-----------------------VQHMHRQKPPIIHRDL  164 (337)
T ss_dssp             EEEEEEECCSEEHHHHHHHHHTTCSCCHHHHHHHHHHHHHH-----------------------HHHHHTSSSCCBCCCC
T ss_pred             eEEEEEEecCCCHHHHHHHhhccCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCCCEEEccC
Confidence            79999999999999998763 23457888888888888888                       99999999  999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      |+.||.+.                                                                        
T Consensus       165 kp~NIl~~------------------------------------------------------------------------  172 (337)
T 3ll6_A          165 KVENLLLS------------------------------------------------------------------------  172 (337)
T ss_dssp             CGGGCEEC------------------------------------------------------------------------
T ss_pred             CcccEEEC------------------------------------------------------------------------
Confidence            99999886                                                                        


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc---------------cccccccceeeCceee---ecCC
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---------------HSTIVSTRHYRAPEVI---LELG  290 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---------------~~~~~gt~~y~aPE~~---~~~~  290 (351)
                                             ....+||+|||++......               .....||+.|+|||++   .+..
T Consensus       173 -----------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~  229 (337)
T 3ll6_A          173 -----------------------NQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFP  229 (337)
T ss_dssp             -----------------------TTSCEEBCCCTTCBCCSSCC-------------------------------CCTTSC
T ss_pred             -----------------------CCCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCC
Confidence                                   2346899999988653221               1145689999999998   4566


Q ss_pred             CCCccceeeeeeeeEeeccccccccccCCCcee
Q psy2006         291 WAQPCDVWSIGCIIFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       291 ~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~~~  323 (351)
                      ++.++|+|||||++|+|++|..||...+..++.
T Consensus       230 ~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~  262 (337)
T 3ll6_A          230 IGEKQDIWALGCILYLLCFRQHPFEDGAKLRIV  262 (337)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred             CChHHhHHHHHHHHHHHHhCCCCCcchhHHHhh
Confidence            788999999999999999999999876655443

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.97  E-value=2.4e-33  Score=265.29  Aligned_cols=197  Identities=17%  Similarity=0.211  Sum_probs=155.9

Q ss_pred             ccccCcccceEEEEEEe---ecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVY---EVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|++.   .++..||||++...  ....+.+.+|+.+|+++.|+|      |+++++++...++.++|
T Consensus        51 ~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~~~~~~~~~~~~~lv  124 (373)
T 2qol_A           51 KVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPN------IIRLEGVVTKSKPVMIV  124 (373)
T ss_dssp             EEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTT------BCCEEEEECSSSSCEEE
T ss_pred             eEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCC------CCeEEEEEeeCCceEEE
Confidence            57999999999999986   46778999999753  334567889999999999887      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+
T Consensus       125 ~e~~~~~sL~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~Dlkp~NIll  180 (373)
T 2qol_A          125 TEYMENGSLDSFLRKHD-AQFTVIQLVGMLRGIASG-----------------------MKYLSDMGYVHRDLAARNILI  180 (373)
T ss_dssp             EECCTTCBHHHHHHTTT-TCSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEE
T ss_pred             EeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeCCCCCcceEEE
Confidence            9999 899999998754 357888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       181 ~-------------------------------------------------------------------------------  181 (373)
T 2qol_A          181 N-------------------------------------------------------------------------------  181 (373)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecccc------ccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH------STIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~------~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                      ....+||+|||++.......      ....+++.|+|||++.+..++.++|+|||||++|++++
T Consensus       182 ----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt  245 (373)
T 2qol_A          182 ----------------SNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMS  245 (373)
T ss_dssp             ----------------TTCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             ----------------CCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHh
Confidence                            23568999999987532211      12334678999999998999999999999999999987


Q ss_pred             -ccccccccCCCcee
Q psy2006         310 -GITLMARKTKTKYF  323 (351)
Q Consensus       310 -G~~pf~~~~~~~~~  323 (351)
                       |..||...+..+..
T Consensus       246 ~g~~P~~~~~~~~~~  260 (373)
T 2qol_A          246 YGERPYWEMSNQDVI  260 (373)
T ss_dssp             TC-CTTTTCCHHHHH
T ss_pred             CCCCCCCCCCHHHHH
Confidence             99999877655543

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5.8e-33  Score=259.09  Aligned_cols=219  Identities=19%  Similarity=0.302  Sum_probs=161.6

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||+|+||+||+|.+.     .+++.||+|++...  ....+.+.+|+.+|+.+ .|+|      |+++++++...+..
T Consensus        51 ~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~------iv~~~~~~~~~~~~  124 (344)
T 1rjb_A           51 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHEN------IVNLLGACTLSGPI  124 (344)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSC
T ss_pred             eeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCC------eeeEEEEEeeCCcc
Confidence            57999999999999974     35678999999753  23456788999999999 7777      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++||||+ +++|.+++..... .+++..+......-+ ........+++..+..++.|++.||.|||++|++|||+|+.|
T Consensus       125 ~lv~e~~~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~N  202 (344)
T 1rjb_A          125 YLIFEYCCYGDLLNYLRSKRE-KFSEDEIEYENQKRL-EEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARN  202 (344)
T ss_dssp             EEEEECCTTCBHHHHHHTTTT-CC----------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGG
T ss_pred             EEEEecCCCCcHHHHHhhccc-cccccccchhhhccc-ccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhh
Confidence            9999999 8899999987642 222211111000000 001111234555566666666666999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       203 Ill~----------------------------------------------------------------------------  206 (344)
T 1rjb_A          203 VLVT----------------------------------------------------------------------------  206 (344)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            9887                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                         ....++|+|||++......     .....||+.|+|||.+.+..++.++|+|||||++|+|
T Consensus       207 -------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el  267 (344)
T 1rjb_A          207 -------------------HGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEI  267 (344)
T ss_dssp             -------------------TTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             -------------------CCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHH
Confidence                               2356999999998653221     2335567889999999988999999999999999999


Q ss_pred             cc-ccccccccCCCcee
Q psy2006         308 YL-GITLMARKTKTKYF  323 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~~  323 (351)
                      +| |..||.+.+..+.+
T Consensus       268 ~t~g~~p~~~~~~~~~~  284 (344)
T 1rjb_A          268 FSLGVNPYPGIPVDANF  284 (344)
T ss_dssp             TTTSCCSSTTCCCSHHH
T ss_pred             HcCCCCCcccCCcHHHH
Confidence            98 99999887765543

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.97  E-value=5.7e-33  Score=260.42  Aligned_cols=192  Identities=24%  Similarity=0.464  Sum_probs=160.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCe------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH------   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~------   72 (351)
                      +.||+|+||+||+|.+..+++.||||++...   ....+.+.+|+.+++.++|+|      |+++++++...+.      
T Consensus        30 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~  103 (353)
T 3coi_A           30 THVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHEN------VIGLLDVFTPASSLRNFYD  103 (353)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTT------BCCCSEEECSCSSGGGCCC
T ss_pred             eeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCC------cccHhheEeccccccccee
Confidence            5799999999999999999999999999753   233456789999999999877      9999999987763      


Q ss_pred             EEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          73 MCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        73 ~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      .|+||||++++|.+++..    .+++..++.++.|++.|                       |.|||++|++|||+|+.|
T Consensus       104 ~~lv~e~~~~~l~~~~~~----~~~~~~~~~i~~qi~~a-----------------------l~~LH~~~ivH~dlkp~N  156 (353)
T 3coi_A          104 FYLVMPFMQTDLQKIMGL----KFSEEKIQYLVYQMLKG-----------------------LKYIHSAGVVHRDLKPGN  156 (353)
T ss_dssp             CEEEEECCSEEGGGTTTS----CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSSCCGGG
T ss_pred             EEEEeccccCCHHHHhcC----CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCCHHH
Confidence            599999998899887643    47888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       157 Il~~----------------------------------------------------------------------------  160 (353)
T 3coi_A          157 LAVN----------------------------------------------------------------------------  160 (353)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EeEC----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                         ..+.+||+|||++...........||+.|+|||++.+ ..++.++|+||+||++|+|++|.
T Consensus       161 -------------------~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~  221 (353)
T 3coi_A          161 -------------------EDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGK  221 (353)
T ss_dssp             -------------------TTCCEEECSTTCTTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSS
T ss_pred             -------------------CCCcEEEeecccccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCC
Confidence                               2356999999999876555566788999999999877 67899999999999999999999


Q ss_pred             ccccccCCCc
Q psy2006         312 TLMARKTKTK  321 (351)
Q Consensus       312 ~pf~~~~~~~  321 (351)
                      .||.+.+..+
T Consensus       222 ~pf~~~~~~~  231 (353)
T 3coi_A          222 TLFKGKDYLD  231 (353)
T ss_dssp             CSSBSSCHHH
T ss_pred             CCCCCCCHHH
Confidence            9998876443

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.97  E-value=1.3e-32  Score=268.24  Aligned_cols=197  Identities=15%  Similarity=0.118  Sum_probs=164.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +++||+|+||+||+|.+..+++.||||++.... ....+..|+++++.|.|.+     +|..+..++...+..||||||+
T Consensus        12 ~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~-~~~~~~~E~~il~~L~~~~-----~i~~i~~~~~~~~~~~lvme~~   85 (483)
T 3sv0_A           12 GRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKT-KHPQLLYESKIYRILQGGT-----GIPNVRWFGVEGDYNVLVMDLL   85 (483)
T ss_dssp             CCCCEECSSCEEEEEEETTTCCEEEEEEEETTC-SSCCHHHHHHHHHHTTTST-----TCCCEEEEEEETTEEEEEEECC
T ss_pred             EEEEeeCCCEEEEEEEECCCCcEEEEEEecccc-ccHHHHHHHHHHHHhcCCC-----CCCeEEEEEeeCCEEEEEEECC
Confidence            468999999999999999999999999987532 2345788999999998644     1667777777888999999999


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..+++..+..++.||+.|                       |.|||++|++|||+|+.||.+..   
T Consensus        86 g~sL~~ll~~~~-~~l~~~~~~~i~~qi~~a-----------------------L~yLH~~gIvHrDIKP~NILl~~---  138 (483)
T 3sv0_A           86 GPSLEDLFNFCS-RKLSLKTVLMLADQMINR-----------------------VEFVHSKSFLHRDIKPDNFLMGL---  138 (483)
T ss_dssp             CCBHHHHHHHTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEECC---
T ss_pred             CCCHHHHHHhhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeecccCcceEEEec---
Confidence            999999998654 367888888888888888                       99999999999999999998851   


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                              .                                                                       
T Consensus       139 --------~-----------------------------------------------------------------------  139 (483)
T 3sv0_A          139 --------G-----------------------------------------------------------------------  139 (483)
T ss_dssp             --------G-----------------------------------------------------------------------
T ss_pred             --------C-----------------------------------------------------------------------
Confidence                    0                                                                       


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccc----------cccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEH----------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                .....+||+|||++......          .....||+.|+|||++.+..++.++|||||||++|+|++|
T Consensus       140 ----------~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG  209 (483)
T 3sv0_A          140 ----------RRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRG  209 (483)
T ss_dssp             ----------GGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHS
T ss_pred             ----------CCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhC
Confidence                      02457999999998763322          1256799999999999999999999999999999999999


Q ss_pred             cccccccCC
Q psy2006         311 ITLMARKTK  319 (351)
Q Consensus       311 ~~pf~~~~~  319 (351)
                      ..||.+...
T Consensus       210 ~~Pf~~~~~  218 (483)
T 3sv0_A          210 SLPWQGLKA  218 (483)
T ss_dssp             SCTTSSCCC
T ss_pred             CCCCccccc
Confidence            999988654

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.97  E-value=5.2e-33  Score=258.17  Aligned_cols=196  Identities=16%  Similarity=0.194  Sum_probs=156.7

Q ss_pred             ccccCcccceEEEEEEeecCcEE----EEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVV----ALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~v----AiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++||+|+||+||+|++..+++.+    |+|.+...  ....+.+.+|+.++++++|+|      |+++++++..+. .++
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~-~~~   93 (327)
T 3poz_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH------VCRLLGICLTST-VQL   93 (327)
T ss_dssp             EEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTT------BCCEEEEEESSS-EEE
T ss_pred             eEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCC------EeEEEEEEecCC-eEE
Confidence            67999999999999987777654    77776532  234467889999999999887      999999998754 778


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |+||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.
T Consensus        94 v~e~~~~g~L~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~LH~~~ivH~Dikp~NIl  149 (327)
T 3poz_A           94 ITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKG-----------------------MNYLEDRRLVHRDLAARNVL  149 (327)
T ss_dssp             EEECCTTCBHHHHHHHST-TSCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEE
T ss_pred             EEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHhhCCeeCCCCChheEE
Confidence            89998 999999998864 357888888888888888                       99999999999999999999


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       150 l~------------------------------------------------------------------------------  151 (327)
T 3poz_A          150 VK------------------------------------------------------------------------------  151 (327)
T ss_dssp             EE------------------------------------------------------------------------------
T ss_pred             EC------------------------------------------------------------------------------
Confidence            87                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                       ....+||+|||++.....     ......+|+.|+|||.+.+..++.++|+|||||++|+++|
T Consensus       152 -----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt  214 (327)
T 3poz_A          152 -----------------TPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT  214 (327)
T ss_dssp             -----------------ETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             -----------------CCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHh
Confidence                             235699999999865322     1223456789999999999999999999999999999999


Q ss_pred             -ccccccccCCCcee
Q psy2006         310 -GITLMARKTKTKYF  323 (351)
Q Consensus       310 -G~~pf~~~~~~~~~  323 (351)
                       |..||.+.+..++.
T Consensus       215 ~g~~p~~~~~~~~~~  229 (327)
T 3poz_A          215 FGSKPYDGIPASEIS  229 (327)
T ss_dssp             TSCCTTTTCCGGGHH
T ss_pred             cCCCCccCCCHHHHH
Confidence             99999887765543

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.97  E-value=3.7e-33  Score=258.16  Aligned_cols=198  Identities=15%  Similarity=0.163  Sum_probs=152.4

Q ss_pred             ccccCcccceEEEEEEeecCc---EEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE--
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS---VVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM--   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~---~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~--   73 (351)
                      +.||+|+||+||+|.+..+++   .||+|++...   ....+.+.+|+++++.++|+|      |+++++++......  
T Consensus        29 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~  102 (323)
T 3qup_A           29 RMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPH------VAKLVGVSLRSRAKGR  102 (323)
T ss_dssp             EEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTT------BCCCCEEEECC-----
T ss_pred             ceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCc------eehhhceeeccccccC
Confidence            579999999999999877665   8999999753   234567889999999998877      99999999887754  


Q ss_pred             ----EEEEecc-CCCHHHHHHhcCC----CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccc
Q psy2006          74 ----CIAFEIL-GLSVFDFLKENNY----LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKRE  144 (351)
Q Consensus        74 ----~lV~E~~-g~sL~~~l~~~~~----~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~  144 (351)
                          ++||||+ +++|.+++.....    ..+++..+..++.|++.|                       |.|||++|++
T Consensus       103 ~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------l~~LH~~~iv  159 (323)
T 3qup_A          103 LPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACG-----------------------MEYLSSRNFI  159 (323)
T ss_dssp             --CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCC
T ss_pred             CCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHH-----------------------HHHHHcCCcc
Confidence                9999999 8899999976531    146777777777777777                       9999999999


Q ss_pred             ccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         145 VRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       145 h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      |||+|+.||.+.                                                                    
T Consensus       160 H~Dikp~NIli~--------------------------------------------------------------------  171 (323)
T 3qup_A          160 HRDLAARNCMLA--------------------------------------------------------------------  171 (323)
T ss_dssp             CSCCSGGGEEEC--------------------------------------------------------------------
T ss_pred             cCCCCcceEEEc--------------------------------------------------------------------
Confidence            999999999886                                                                    


Q ss_pred             CchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceee
Q psy2006         225 PSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWS  299 (351)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Diws  299 (351)
                                                 ..+.+||+|||++.....     ......+++.|+|||.+.+..++.++|+||
T Consensus       172 ---------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  224 (323)
T 3qup_A          172 ---------------------------EDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWA  224 (323)
T ss_dssp             ---------------------------TTSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHH
T ss_pred             ---------------------------CCCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhh
Confidence                                       235699999999865322     112345677899999999999999999999


Q ss_pred             eeeeeEeecc-ccccccccCCCcee
Q psy2006         300 IGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       300 lG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      |||++|++++ |..||.+.+..+.+
T Consensus       225 lG~il~ell~~g~~p~~~~~~~~~~  249 (323)
T 3qup_A          225 FGVTMWEIMTRGQTPYAGIENAEIY  249 (323)
T ss_dssp             HHHHHHHHHTTSCCTTTTCCGGGHH
T ss_pred             HHHHHHHHHhCCCCCccccChHHHH
Confidence            9999999999 99999987776654

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.97  E-value=6e-33  Score=252.52  Aligned_cols=199  Identities=19%  Similarity=0.133  Sum_probs=161.1

Q ss_pred             ccccCcccceEEEEEEeecC-------cEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVD-------SVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~-------~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      ++||+|+||+||+|++..++       +.||+|++.... ...+.+.+|+.+++.++|+|      |+++++++...+..
T Consensus        14 ~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~   87 (289)
T 4fvq_A           14 ESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKH------LVLNYGVCVCGDEN   87 (289)
T ss_dssp             EEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTT------BCCEEEEECCTTCC
T ss_pred             eeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCC------EeEEEEEEEeCCCC
Confidence            57999999999999998877       579999997543 44567889999999999877      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++||||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.|
T Consensus        88 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivH~Dlkp~N  143 (289)
T 4fvq_A           88 ILVQEFVKFGSLDTYLKKNK-NCINILWKLEVAKQLAAA-----------------------MHFLEENTLIHGNVCAKN  143 (289)
T ss_dssp             EEEEECCTTCBHHHHHHHTG-GGCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGG
T ss_pred             EEEEECCCCCCHHHHHHhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHhhCCeECCCcCcce
Confidence            9999999 799999998764 247788888888888887                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.+-|....                                                                     
T Consensus       144 Ill~~~~~~~~---------------------------------------------------------------------  154 (289)
T 4fvq_A          144 ILLIREEDRKT---------------------------------------------------------------------  154 (289)
T ss_dssp             EEEEECCBGGG---------------------------------------------------------------------
T ss_pred             EEEecCCcccc---------------------------------------------------------------------
Confidence            99873221000                                                                     


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                        .....+||+|||++..... .....||+.|+|||++.+ ..++.++|+||+||++|+|++|.
T Consensus       155 ------------------~~~~~~kl~Dfg~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~  215 (289)
T 4fvq_A          155 ------------------GNPPFIKLSDPGISITVLP-KDILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGG  215 (289)
T ss_dssp             ------------------TBCCEEEECCCCSCTTTSC-HHHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTT
T ss_pred             ------------------cccceeeeccCcccccccC-ccccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCC
Confidence                              0123489999999864322 233567889999999987 66899999999999999999954


Q ss_pred             -ccccccC
Q psy2006         312 -TLMARKT  318 (351)
Q Consensus       312 -~pf~~~~  318 (351)
                       +||...+
T Consensus       216 ~~~~~~~~  223 (289)
T 4fvq_A          216 DKPLSALD  223 (289)
T ss_dssp             CCTTTTSC
T ss_pred             CCCccccc
Confidence             4554433

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.97  E-value=8.4e-33  Score=250.60  Aligned_cols=189  Identities=20%  Similarity=0.203  Sum_probs=162.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee------------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY------------   69 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~------------   69 (351)
                      +.||+|+||.||+|.+..+++.||+|++....   +.+.+|+++++.+.|+|      |+++++++..            
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~~~~~~~   87 (284)
T 2a19_B           17 ELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN---EKAEREVKALAKLDHVN------IVHYNGCWDGFDYDPETSSKNS   87 (284)
T ss_dssp             EEEECSSSCCEEEEEETTTCCEEEEEEEECCS---GGGHHHHHHHHHCCCTT------BCCEEEEEEEEEEC--------
T ss_pred             eeeccCCceEEEEEEEcCCCeEEEEEEecccc---HHHHHHHHHHHhCCCCC------EEEEeeeEeccccCcccccccc
Confidence            67999999999999998899999999997542   45678999999999887      9999999865            


Q ss_pred             ----CCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccc
Q psy2006          70 ----HGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKRE  144 (351)
Q Consensus        70 ----~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~  144 (351)
                          ...+++||||+ +++|.+++.......+++..+..++.|++.|                       |.|||++|++
T Consensus        88 ~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~i~  144 (284)
T 2a19_B           88 SRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKG-----------------------VDYIHSKKLI  144 (284)
T ss_dssp             -CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEE
T ss_pred             cccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCee
Confidence                34699999999 7899999987654568888888888888888                       9999999999


Q ss_pred             ccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         145 VRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       145 h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      |+|+|+.||.+.+                                                                   
T Consensus       145 H~dlkp~Nil~~~-------------------------------------------------------------------  157 (284)
T 2a19_B          145 NRDLKPSNIFLVD-------------------------------------------------------------------  157 (284)
T ss_dssp             CSCCSGGGEEEEE-------------------------------------------------------------------
T ss_pred             eccCCHHHEEEcC-------------------------------------------------------------------
Confidence            9999999998872                                                                   


Q ss_pred             CchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeee
Q psy2006         225 PSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGC  302 (351)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~  302 (351)
                                                  ...++|+|||++.....  ......||+.|+|||.+.+..++.++|+|||||
T Consensus       158 ----------------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~  209 (284)
T 2a19_B          158 ----------------------------TKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGL  209 (284)
T ss_dssp             ----------------------------TTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHH
T ss_pred             ----------------------------CCCEEECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHH
Confidence                                        34699999999875332  334567899999999998888999999999999


Q ss_pred             eeEeecccccccccc
Q psy2006         303 IIFELYLGITLMARK  317 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~  317 (351)
                      ++|+|++|..||...
T Consensus       210 il~~l~~~~~~~~~~  224 (284)
T 2a19_B          210 ILAELLHVCDTAFET  224 (284)
T ss_dssp             HHHHHHSCCSSHHHH
T ss_pred             HHHHHHhcCCcchhH
Confidence            999999999998653

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=5.2e-33  Score=249.91  Aligned_cols=196  Identities=16%  Similarity=0.220  Sum_probs=167.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      +.||+|+||+||+|.+. +++.||+|++.......+.+.+|+++++.++|+|      |+++++++...+..++||||+ 
T Consensus        14 ~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~~   86 (267)
T 3t9t_A           14 QEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK------LVQLYGVCLEQAPICLVTEFME   86 (267)
T ss_dssp             EEEEEETTEEEEEEEET-TTEEEEEEEECTTTBCHHHHHHHHHHHHTCCCTT------BCCEEEEECSSSSCEEEECCCT
T ss_pred             eEecCCCceeEEEEEec-CCCeEEEEEccccCCCHHHHHHHHHHHHhCCCCC------EeeEEEEEccCCCeEEEEeCCC
Confidence            57999999999999974 7789999999876555677899999999998877      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..+++..+..++.|++.+                       |.|||++|++|+|+|+.|+.+.    
T Consensus        87 ~~~L~~~~~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dl~p~Nili~----  138 (267)
T 3t9t_A           87 HGCLSDYLRTQR-GLFAAETLLGMCLDVCEG-----------------------MAYLEEACVIHRDLAARNCLVG----  138 (267)
T ss_dssp             TCBHHHHHHHTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSSCCGGGEEEC----
T ss_pred             CCcHHHHHhhCc-ccCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCchheEEEC----
Confidence            889999998764 357788888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (267)
T 3t9t_A          139 --------------------------------------------------------------------------------  138 (267)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....++|+|||++.....    ......+++.|+|||++.+..++.++|+||+||++|++++ |..||.
T Consensus       139 -----------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~  207 (267)
T 3t9t_A          139 -----------ENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE  207 (267)
T ss_dssp             -----------GGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTT
T ss_pred             -----------CCCCEEEcccccccccccccccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCC
Confidence                       235699999999875322    2233556788999999988889999999999999999999 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      ..+..+..
T Consensus       208 ~~~~~~~~  215 (267)
T 3t9t_A          208 NRSNSEVV  215 (267)
T ss_dssp             TCCHHHHH
T ss_pred             CCCHHHHH
Confidence            87655544

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.97  E-value=8.3e-33  Score=250.97  Aligned_cols=196  Identities=19%  Similarity=0.261  Sum_probs=155.0

Q ss_pred             ccccCcccceEEEEEEee---cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYE---VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~---~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..   .+..||+|++...  ....+.+.+|+.+++.++|+|      |+++++++. ++..|+|
T Consensus        21 ~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~-~~~~~lv   93 (281)
T 1mp8_A           21 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPH------IVKLIGVIT-ENPVWII   93 (281)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTT------BCCEEEEEC-SSSCEEE
T ss_pred             eEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCc------cceEEEEEc-cCccEEE
Confidence            579999999999999864   3567999999753  234567889999999998877      999999984 5688999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+
T Consensus        94 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dlkp~Nil~  149 (281)
T 1mp8_A           94 MELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTA-----------------------LAYLESKRFVHRDIAARNVLV  149 (281)
T ss_dssp             EECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEE
T ss_pred             EecCCCCCHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecccccHHHEEE
Confidence            9999 789999998764 357788888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       150 ~-------------------------------------------------------------------------------  150 (281)
T 1mp8_A          150 S-------------------------------------------------------------------------------  150 (281)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            7                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-c
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-G  310 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G  310 (351)
                                      ....+||+|||++.....    ......+++.|+|||.+.+..++.++|+|||||++|++++ |
T Consensus       151 ----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g  214 (281)
T 1mp8_A          151 ----------------SNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHG  214 (281)
T ss_dssp             ----------------ETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTS
T ss_pred             ----------------CCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcC
Confidence                            235689999999875322    1233456788999999988899999999999999999996 9


Q ss_pred             cccccccCCCcee
Q psy2006         311 ITLMARKTKTKYF  323 (351)
Q Consensus       311 ~~pf~~~~~~~~~  323 (351)
                      ..||.+.+..+.+
T Consensus       215 ~~pf~~~~~~~~~  227 (281)
T 1mp8_A          215 VKPFQGVKNNDVI  227 (281)
T ss_dssp             CCTTTTCCGGGHH
T ss_pred             CCCCCcCCHHHHH
Confidence            9999887766554

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.97  E-value=1.1e-32  Score=255.07  Aligned_cols=196  Identities=22%  Similarity=0.377  Sum_probs=165.2

Q ss_pred             ccccCcccceEEEEEEe-ecCcEEEEEEecchh---hhhHHHHHHHHHHHHh---CCCCCCCCcceeeeeeeEe-----e
Q psy2006           2 CSLNCVASNHVCTNVVY-EVDSVVALKIIKNVE---KYREAARLEINALQKI---GEKDPNGRHLCVKMLDWFD-----Y   69 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l---~h~~~~g~~~Iv~l~~~f~-----~   69 (351)
                      ++||+|+||+||+|.+. .+++.||+|++....   .....+.+|+.+++.+   .|+|      |+++++++.     .
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~------i~~~~~~~~~~~~~~   90 (326)
T 1blx_A           17 AEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPN------VVRLFDVCTVSRTDR   90 (326)
T ss_dssp             EEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTT------BCCEEEEEEEEECSS
T ss_pred             eeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCC------eEeeeeeeeecccCC
Confidence            67999999999999985 578999999997432   2234567888888887   6666      999999997     4


Q ss_pred             CCeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccC
Q psy2006          70 HGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR  149 (351)
Q Consensus        70 ~~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k  149 (351)
                      ..++++||||++++|.+++.......+++..++.++.|++.|                       |.|||++|++|+|+|
T Consensus        91 ~~~~~lv~e~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~gi~H~dlk  147 (326)
T 1blx_A           91 ETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRG-----------------------LDFLHSHRVVHRDLK  147 (326)
T ss_dssp             EEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCC
T ss_pred             CceEEEEEecCCCCHHHHHHhcccCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceeccCC
Confidence            558999999998899999988765568888888888888888                       999999999999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      +.||.+.                                                                         
T Consensus       148 p~Nili~-------------------------------------------------------------------------  154 (326)
T 1blx_A          148 PQNILVT-------------------------------------------------------------------------  154 (326)
T ss_dssp             GGGEEEC-------------------------------------------------------------------------
T ss_pred             HHHeEEc-------------------------------------------------------------------------
Confidence            9999886                                                                         


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                            ..+.++|+|||++....  .......||+.|+|||++.+..++.++|+|||||++|++
T Consensus       155 ----------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  212 (326)
T 1blx_A          155 ----------------------SSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEM  212 (326)
T ss_dssp             ----------------------TTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred             ----------------------CCCCEEEecCcccccccCCCCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHH
Confidence                                  23568999999987533  233456789999999999988899999999999999999


Q ss_pred             ccccccccccCCCc
Q psy2006         308 YLGITLMARKTKTK  321 (351)
Q Consensus       308 ~tG~~pf~~~~~~~  321 (351)
                      ++|..||.+.+..+
T Consensus       213 ~~g~~pf~~~~~~~  226 (326)
T 1blx_A          213 FRRKPLFRGSSDVD  226 (326)
T ss_dssp             HHSSCSCCCSSHHH
T ss_pred             HcCCCCCCCCCHHH
Confidence            99999998876544

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.97  E-value=3.4e-33  Score=258.74  Aligned_cols=190  Identities=17%  Similarity=0.175  Sum_probs=160.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||+|+||+||+|.+ .+++.||+|++....  .....+.+|+++++.+.|+|      |+++++++...++.++||||
T Consensus        36 ~~lg~G~~g~V~~~~~-~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e~  108 (326)
T 3uim_A           36 NILGRGGFGKVYKGRL-ADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRN------LLRLRGFCMTPTERLLVYPY  108 (326)
T ss_dssp             TEEECCSSSEEEEECC-SSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTT------BCCCCEEECCSSCCEEEEEC
T ss_pred             eeEecCCCcEEEEEEe-cCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCC------ccceEEEEecCCceEEEEEe
Confidence            6799999999999985 478999999997642  22235789999999999877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCC--CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc---cccccccCCCCe
Q psy2006          80 L-GLSVFDFLKENNY--LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK---KREVRRVRRCDI  153 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~--~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~---~i~h~d~k~~ni  153 (351)
                      + +++|.+++.....  ..+++..+..++.|++.|                       |.|||++   |++|||+|+.||
T Consensus       109 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~~~~ivH~Dlkp~Ni  165 (326)
T 3uim_A          109 MANGSVASCLRERPESQPPLDWPKRQRIALGSARG-----------------------LAYLHDHCDPKIIHRDVKAANI  165 (326)
T ss_dssp             CTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHSSSSCEECCCCSGGGE
T ss_pred             ccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCCCCeEeCCCchhhE
Confidence            9 8899999987642  237777788888888877                       9999999   999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       166 l~~-----------------------------------------------------------------------------  168 (326)
T 3uim_A          166 LLD-----------------------------------------------------------------------------  168 (326)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EEC-----------------------------------------------------------------------------
Confidence            886                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                        ....+||+|||++.....    ......||+.|+|||++.+..++.++|+||+||++|++++
T Consensus       169 ------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~  230 (326)
T 3uim_A          169 ------------------EEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELIT  230 (326)
T ss_dssp             ------------------TTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCCEEeccCccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHh
Confidence                              235699999999875322    2234568999999999988889999999999999999999


Q ss_pred             ccccccc
Q psy2006         310 GITLMAR  316 (351)
Q Consensus       310 G~~pf~~  316 (351)
                      |..||..
T Consensus       231 g~~pf~~  237 (326)
T 3uim_A          231 GQRAFDL  237 (326)
T ss_dssp             CCCSBCH
T ss_pred             CCCcccc
Confidence            9999963

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.97  E-value=4.2e-33  Score=254.11  Aligned_cols=195  Identities=21%  Similarity=0.287  Sum_probs=162.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ..||+|+||+||+|.+..+++.||+|++... ....+.+.+|+.+++.+.|+|      |+++++++...+..++||||+
T Consensus        28 ~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~lv~e~~  101 (295)
T 2clq_A           28 VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKN------IVQYLGSFSENGFIKIFMEQV  101 (295)
T ss_dssp             CEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTT------BCCEEEEEEETTEEEEEEECC
T ss_pred             EEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCC------EeeEeeEEEeCCcEEEEEEeC
Confidence            3699999999999999999999999999754 234567889999999998877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcC-CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          81 -GLSVFDFLKENN-YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        81 -g~sL~~~l~~~~-~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                       +++|.+++.... ...+++..++.++.|++.|                       |.|||++|++|+|+++.|+.+.+ 
T Consensus       102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl~p~Nil~~~-  157 (295)
T 2clq_A          102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEG-----------------------LKYLHDNQIVHRDIKGDNVLINT-  157 (295)
T ss_dssp             SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEET-
T ss_pred             CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHH-----------------------HHHHHhCCEEccCCChhhEEEEC-
Confidence             899999998763 2345677777777777777                       99999999999999999998861 


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (295)
T 2clq_A          158 --------------------------------------------------------------------------------  157 (295)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCC--CCCccceeeeeeeeEeecccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELG--WAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~--~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                   ....++|+|||++.....   ......|++.|+|||++.+..  ++.++|+|||||++|+|++|..|
T Consensus       158 -------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p  224 (295)
T 2clq_A          158 -------------YSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPP  224 (295)
T ss_dssp             -------------TTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCT
T ss_pred             -------------CCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCC
Confidence                         135689999999875322   234567899999999997654  78899999999999999999999


Q ss_pred             ccccCC
Q psy2006         314 MARKTK  319 (351)
Q Consensus       314 f~~~~~  319 (351)
                      |.....
T Consensus       225 f~~~~~  230 (295)
T 2clq_A          225 FYELGE  230 (295)
T ss_dssp             TGGGSS
T ss_pred             ccCCCc
Confidence            986543

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.97  E-value=8.1e-33  Score=257.95  Aligned_cols=195  Identities=22%  Similarity=0.316  Sum_probs=139.6

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHH-HHHHHhCCCCCCCCcceeeeeeeEee----CCeEEEEE
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEI-NALQKIGEKDPNGRHLCVKMLDWFDY----HGHMCIAF   77 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~-~~l~~l~h~~~~g~~~Iv~l~~~f~~----~~~~~lV~   77 (351)
                      .||+|+||+||+|.++.+++.||+|++.....    ..+|+ ..++.+.|+|      |++++++|..    ...+++||
T Consensus        36 ~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~e~~~~~~~~~h~~------i~~~~~~~~~~~~~~~~~~lv~  105 (336)
T 3fhr_A           36 VLGLGVNGKVLECFHRRTGQKCALKLLYDSPK----ARQEVDHHWQASGGPH------IVCILDVYENMHHGKRCLLIIM  105 (336)
T ss_dssp             EEEEETTEEEEEEEETTTCCEEEEEEEESSHH----HHHHHHHHHHHTTSTT------BCCEEEEEEEEETTEEEEEEEE
T ss_pred             eeeeCCCeEEEEEEECCCCCEEEEEEecCcHH----HHHHHHHHHHhcCCCC------hHHHHHHHhhccCCCceEEEEE
Confidence            49999999999999999999999999976432    22333 3355566666      9999999987    44799999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++.......+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.
T Consensus       106 e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~-----------------------l~~LH~~~ivH~dlkp~NIll~  162 (336)
T 3fhr_A          106 ECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTA-----------------------IQFLHSHNIAHRDVKPENLLYT  162 (336)
T ss_dssp             ECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEES
T ss_pred             eccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCCCCHHHEEEE
Confidence            999 8899999998765678888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +-|                                                                             
T Consensus       163 ~~~-----------------------------------------------------------------------------  165 (336)
T 3fhr_A          163 SKE-----------------------------------------------------------------------------  165 (336)
T ss_dssp             CSS-----------------------------------------------------------------------------
T ss_pred             ecC-----------------------------------------------------------------------------
Confidence            200                                                                             


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                     ....+||+|||++.... .......||+.|+|||++.+..++.++|+|||||++|++++|..||.
T Consensus       166 ---------------~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~  230 (336)
T 3fhr_A          166 ---------------KDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFY  230 (336)
T ss_dssp             ---------------TTCCEEECCCTTCEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-
T ss_pred             ---------------CCceEEEeccccceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                           13458999999987643 23345678999999999988888999999999999999999999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      +.+....
T Consensus       231 ~~~~~~~  237 (336)
T 3fhr_A          231 SNTGQAI  237 (336)
T ss_dssp             -------
T ss_pred             Cccchhh
Confidence            8776554

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.97  E-value=1.1e-32  Score=253.50  Aligned_cols=214  Identities=21%  Similarity=0.272  Sum_probs=160.5

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecchh--hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNVE--KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||+|+||+||+|.+.     .+++.||+|++....  ...+.+.+|+++++.+ +|+|      |+++++++...+..
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~------i~~~~~~~~~~~~~  102 (313)
T 1t46_A           29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN------IVNLLGACTIGGPT  102 (313)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSC
T ss_pred             HhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCC------eeeEEEEEecCCCc
Confidence            57999999999999863     467899999997542  3456788999999999 7777      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++||||+ +++|.+++................       .......+++..+..++.|++.||.|||++|++|||+|+.|
T Consensus       103 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~N  175 (313)
T 1t46_A          103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAI-------MEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARN  175 (313)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTTC---------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             EEEEecCCCCCHHHHHHhcccccccccccccc-------cccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccce
Confidence            9999999 889999998764221000000000       00011123444444444444444999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       176 il~~----------------------------------------------------------------------------  179 (313)
T 1t46_A          176 ILLT----------------------------------------------------------------------------  179 (313)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                         ....+||+|||++......     .....+|+.|+|||.+.+..++.++|+|||||++|+|
T Consensus       180 -------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el  240 (313)
T 1t46_A          180 -------------------HGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL  240 (313)
T ss_dssp             -------------------TTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             -------------------CCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHH
Confidence                               2356899999998653322     2234567889999999988999999999999999999


Q ss_pred             cc-ccccccccCCCcee
Q psy2006         308 YL-GITLMARKTKTKYF  323 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~~  323 (351)
                      +| |..||.+.+..+.+
T Consensus       241 lt~g~~p~~~~~~~~~~  257 (313)
T 1t46_A          241 FSLGSSPYPGMPVDSKF  257 (313)
T ss_dssp             HTTTCCSSTTCCSSHHH
T ss_pred             HhCCCCCCCcccchhHH
Confidence            98 99999887765443

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.97  E-value=4.7e-33  Score=265.18  Aligned_cols=194  Identities=22%  Similarity=0.343  Sum_probs=156.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------eEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------HMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------~~~l   75 (351)
                      +.||+|+||+||+|++..+++ ||+|++....   ....+|+++|+.++|+|      |++++++|...+      .+++
T Consensus        46 ~~lG~G~~g~V~~a~~~~~~~-~aikk~~~~~---~~~~~E~~il~~l~h~n------iv~l~~~~~~~~~~~~~~~~~l  115 (394)
T 4e7w_A           46 KVIGNGSFGVVFQAKLVESDE-VAIKKVLQDK---RFKNRELQIMRIVKHPN------VVDLKAFFYSNGDKKDEVFLNL  115 (394)
T ss_dssp             EEEEEETTEEEEEEEETTTEE-EEEEEEECCT---TSCCHHHHHHHTCCCTT------BCCEEEEEEEESSSSSCEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCe-EEEEEEecCc---chHHHHHHHHHhCCCCC------cceEEEEEEecCCCCCceEEEE
Confidence            579999999999999866665 8888886532   22346999999999888      999999996554      4999


Q ss_pred             EEeccCCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          76 AFEILGLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      ||||+++++.+.+...  ....+++..++.++.|++.|                       |.|||++|++|||+|+.|+
T Consensus       116 v~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------L~~LH~~~ivHrDlkp~Ni  172 (394)
T 4e7w_A          116 VLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRS-----------------------LAYIHSIGICHRDIKPQNL  172 (394)
T ss_dssp             EEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGE
T ss_pred             EeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCccCCCCCHHHE
Confidence            9999977777665532  22357777788877777777                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+..                                                                            
T Consensus       173 ll~~----------------------------------------------------------------------------  176 (394)
T 4e7w_A          173 LLDP----------------------------------------------------------------------------  176 (394)
T ss_dssp             EEET----------------------------------------------------------------------------
T ss_pred             EEcC----------------------------------------------------------------------------
Confidence            8861                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG  310 (351)
                                        ..+.+||+|||++...  ........||+.|+|||++.+. .++.++|+||+||++|+|++|
T Consensus       177 ------------------~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g  238 (394)
T 4e7w_A          177 ------------------PSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQG  238 (394)
T ss_dssp             ------------------TTTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHS
T ss_pred             ------------------CCCcEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhC
Confidence                              2357999999999763  3334567889999999999765 589999999999999999999


Q ss_pred             cccccccCCCce
Q psy2006         311 ITLMARKTKTKY  322 (351)
Q Consensus       311 ~~pf~~~~~~~~  322 (351)
                      ..||.+.+..+.
T Consensus       239 ~~pf~~~~~~~~  250 (394)
T 4e7w_A          239 QPLFPGESGIDQ  250 (394)
T ss_dssp             SCSSCCSSHHHH
T ss_pred             CCCCCCCCHHHH
Confidence            999998775543

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.8e-33  Score=261.62  Aligned_cols=197  Identities=12%  Similarity=0.026  Sum_probs=158.8

Q ss_pred             ccccCcccceEEEEEEee--------cCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCC---------CCCcceeeee
Q psy2006           2 CSLNCVASNHVCTNVVYE--------VDSVVALKIIKNVEKYREAARLEINALQKIGEKDP---------NGRHLCVKML   64 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~--------~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~---------~g~~~Iv~l~   64 (351)
                      ++||+|+||+||+|.+..        .++.||+|++...    +.+.+|+++++.+.|+|-         .+..+++.++
T Consensus        48 ~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~----~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~i~~~~  123 (352)
T 2jii_A           48 SFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD----GRLFNEQNFFQRAAKPLQVNKWKKLYSTPLLAIPTCM  123 (352)
T ss_dssp             EEEEEETTEEEEEEEECC-----------CEEEEEEETT----STHHHHHHHHHHHCCHHHHHHHHHHTTCTTCSCCCCC
T ss_pred             EEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc----chHHHHHHHHHHhcccchhhhhhhhccCCccCccchh
Confidence            679999999999999987        4899999999863    467789999999987650         0011133377


Q ss_pred             eeEee-CCeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccc
Q psy2006          65 DWFDY-HGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKR  143 (351)
Q Consensus        65 ~~f~~-~~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i  143 (351)
                      +++.. ++..|+||||++++|.+++.......+++..+..++.|++.|                       |.|||++|+
T Consensus       124 ~~~~~~~~~~~lv~e~~~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~-----------------------L~~LH~~~i  180 (352)
T 2jii_A          124 GFGVHQDKYRFLVLPSLGRSLQSALDVSPKHVLSERSVLQVACRLLDA-----------------------LEFLHENEY  180 (352)
T ss_dssp             EEEEETTTEEEEEEECCCEEHHHHHHHSGGGCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTC
T ss_pred             hccccCCcEEEEEecCCCcCHHHHHHhCCcCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCc
Confidence            77776 679999999999999999998633468888888888888888                       999999999


Q ss_pred             cccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         144 EVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       144 ~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                      +|||+|+.||.+.+-                                                                 
T Consensus       181 vH~Dikp~NIl~~~~-----------------------------------------------------------------  195 (352)
T 2jii_A          181 VHGNVTAENIFVDPE-----------------------------------------------------------------  195 (352)
T ss_dssp             BCSCCCGGGEEEETT-----------------------------------------------------------------
T ss_pred             cCCCCCHHHEEEcCC-----------------------------------------------------------------
Confidence            999999999988710                                                                 


Q ss_pred             CCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc----------ccccccccceeeCceeeecCCCCC
Q psy2006         224 LPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHYRAPEVILELGWAQ  293 (351)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~  293 (351)
                                                  ....++|+|||++.....          ......||+.|+|||++.+..++.
T Consensus       196 ----------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  247 (352)
T 2jii_A          196 ----------------------------DQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSR  247 (352)
T ss_dssp             ----------------------------EEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCH
T ss_pred             ----------------------------CCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCc
Confidence                                        012799999999865321          113457899999999998888999


Q ss_pred             ccceeeeeeeeEeeccccccccccC
Q psy2006         294 PCDVWSIGCIIFELYLGITLMARKT  318 (351)
Q Consensus       294 ~~DiwslG~~l~~l~tG~~pf~~~~  318 (351)
                      ++|+|||||++|+|++|..||.+..
T Consensus       248 ~~Di~slG~il~el~~g~~pf~~~~  272 (352)
T 2jii_A          248 RSDLQSLGYCMLKWLYGFLPWTNCL  272 (352)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTGGGT
T ss_pred             hhhHHHHHHHHHHHHhCCCCcccCC
Confidence            9999999999999999999998875

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.97  E-value=1.2e-32  Score=249.57  Aligned_cols=211  Identities=15%  Similarity=0.077  Sum_probs=162.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|.+..+++.||+|++...   ......+.+|+.++..+ .|+|      |+++++++...++.++||
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~------iv~~~~~~~~~~~~~lv~   90 (289)
T 1x8b_A           17 EKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSH------VVRYFSAWAEDDHMLIQN   90 (289)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTT------BCCEEEEEEETTEEEEEE
T ss_pred             hhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCC------eeeeeeeeecCCeEEEEE
Confidence            6799999999999999889999999999753   23445678899999998 7777      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCC--CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          78 EIL-GLSVFDFLKENNY--LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~--~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||+ +++|.+++.....  ..+++..++.++.|++.|                       |.|||++|++|||+|+.||.
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~ivH~Dikp~NIl  147 (289)
T 1x8b_A           91 EYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRG-----------------------LRYIHSMSLVHMDIKPSNIF  147 (289)
T ss_dssp             ECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEE
T ss_pred             EecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEeecCCCHHHEE
Confidence            999 8899999987521  357788888888888887                       99999999999999999999


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +..-|..........                                                                 
T Consensus       148 ~~~~~~~~~~~~~~~-----------------------------------------------------------------  162 (289)
T 1x8b_A          148 ISRTSIPNAASEEGD-----------------------------------------------------------------  162 (289)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             EcCCCCCcccccccc-----------------------------------------------------------------
Confidence            874332211000000                                                                 


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                 ..........++|+|||.+...... ....||+.|+|||.+.+. .++.++|+|||||+++++++|.+|
T Consensus       163 -----------~~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~  230 (289)
T 1x8b_A          163 -----------EDDWASNKVMFKIGDLGHVTRISSP-QVEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPL  230 (289)
T ss_dssp             ------------------CCCEEECCCTTCEETTCS-CCCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             -----------cccccCCceEEEEcccccccccCCc-cccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCC
Confidence                       0000012457999999998764432 234689999999999765 557899999999999999999988


Q ss_pred             ccccC
Q psy2006         314 MARKT  318 (351)
Q Consensus       314 f~~~~  318 (351)
                      |....
T Consensus       231 ~~~~~  235 (289)
T 1x8b_A          231 PRNGD  235 (289)
T ss_dssp             CSSSH
T ss_pred             Ccchh
Confidence            75544

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.97  E-value=8.8e-33  Score=249.08  Aligned_cols=201  Identities=16%  Similarity=0.205  Sum_probs=156.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.+  +++.||+|++....     ...+.+.+|+++++.++|+|      |+++++++..+++.|+|
T Consensus        13 ~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv   84 (271)
T 3dtc_A           13 EIIGIGGFGKVYRAFW--IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPN------IIALRGVCLKEPNLCLV   84 (271)
T ss_dssp             EEEEEETTEEEEEEEE--TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTT------BCCEEEEECCC--CEEE
T ss_pred             eeeccCCCeEEEEEEE--cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCC------EeeEEEEEecCCceEEE
Confidence            5799999999999995  58999999997532     22356788999999999877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc---ccccccCCCC
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK---REVRRVRRCD  152 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~---i~h~d~k~~n  152 (351)
                      |||+ +++|.+++...   .+++..+..++.|++.+                       |.|||++|   ++|||+|++|
T Consensus        85 ~e~~~~~~L~~~~~~~---~~~~~~~~~i~~~l~~~-----------------------l~~lH~~~~~~i~H~dikp~N  138 (271)
T 3dtc_A           85 MEFARGGPLNRVLSGK---RIPPDILVNWAVQIARG-----------------------MNYLHDEAIVPIIHRDLKSSN  138 (271)
T ss_dssp             EECCTTEEHHHHHTSS---CCCHHHHHHHHHHHHHH-----------------------HHHHHHSSSSCCCCSCCSGGG
T ss_pred             EEcCCCCCHHHHhhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCCCceeecCCchHH
Confidence            9999 89999998643   57888888888888888                       99999999   8899999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.+.+..                                                                       
T Consensus       139 il~~~~~~~-----------------------------------------------------------------------  147 (271)
T 3dtc_A          139 ILILQKVEN-----------------------------------------------------------------------  147 (271)
T ss_dssp             EEESSCCSS-----------------------------------------------------------------------
T ss_pred             EEEeccccc-----------------------------------------------------------------------
Confidence            998731100                                                                       


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                      .......++|+|||++.... .......||+.|+|||.+.+..++.++|+||+||+++++++|.
T Consensus       148 ----------------~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~  211 (271)
T 3dtc_A          148 ----------------GDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGE  211 (271)
T ss_dssp             ----------------SCCSSCCEEECCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCC
T ss_pred             ----------------ccccCcceEEccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCC
Confidence                            00024579999999987533 2234567899999999999889999999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      .||.+.+..+..
T Consensus       212 ~p~~~~~~~~~~  223 (271)
T 3dtc_A          212 VPFRGIDGLAVA  223 (271)
T ss_dssp             CTTTTSCHHHHH
T ss_pred             CCCCCCCHHHHH
Confidence            999887655443

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.97  E-value=7.8e-33  Score=260.16  Aligned_cols=194  Identities=21%  Similarity=0.338  Sum_probs=155.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh------------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE------------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY   69 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~------------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~   69 (351)
                      +.||+|+||+||+|.+. .++.||+|++....            ...+.+.+|+++++.++|+|      |++++++|..
T Consensus        28 ~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~  100 (362)
T 3pg1_A           28 RFISSGSYGAVCAGVDS-EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPN------ILGLRDIFVH  100 (362)
T ss_dssp             EEEEEETTEEEEEEECT-TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTT------BCCCSEEEEE
T ss_pred             EEeccCCCEEEEEEECC-CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcC------ccceeeeEEe
Confidence            67999999999999984 49999999995421            11267889999999999887      9999999954


Q ss_pred             -----CCeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccc
Q psy2006          70 -----HGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKRE  144 (351)
Q Consensus        70 -----~~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~  144 (351)
                           ..++|+||||++++|.+++.... ..+++..++.++.|++.|                       |.|||++|++
T Consensus       101 ~~~~~~~~~~lv~e~~~~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~iv  156 (362)
T 3pg1_A          101 FEEPAMHKLYLVTELMRTDLAQVIHDQR-IVISPQHIQYFMYHILLG-----------------------LHVLHEAGVV  156 (362)
T ss_dssp             CCTTTCCEEEEEEECCSEEHHHHHHCTT-SCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCC
T ss_pred             ccCCCcceEEEEEccCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCcCE
Confidence                 33799999999989999988654 467888888888888888                       9999999999


Q ss_pred             ccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         145 VRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       145 h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      |||+|+.||.+.                                                                    
T Consensus       157 H~Dlkp~NIl~~--------------------------------------------------------------------  168 (362)
T 3pg1_A          157 HRDLHPGNILLA--------------------------------------------------------------------  168 (362)
T ss_dssp             CCCCCGGGEEEC--------------------------------------------------------------------
T ss_pred             ecCCChHHEEEc--------------------------------------------------------------------
Confidence            999999999886                                                                    


Q ss_pred             CchhhhcccchhhhhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeec-CCCCCccceeeee
Q psy2006         225 PSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIG  301 (351)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG  301 (351)
                                                 ..+.+||+|||++...  ........||+.|+|||++.+ ..++.++|+||+|
T Consensus       169 ---------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG  221 (362)
T 3pg1_A          169 ---------------------------DNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAG  221 (362)
T ss_dssp             ---------------------------TTCCEEECCTTC---------------CGGGCCHHHHTTCTTCCTHHHHHHHH
T ss_pred             ---------------------------CCCCEEEEecCcccccccccccceecccceecCcHHhcCCCCCCcHhHHHhHH
Confidence                                       2356999999998752  223345678999999999877 6789999999999


Q ss_pred             eeeEeeccccccccccCCCc
Q psy2006         302 CIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       302 ~~l~~l~tG~~pf~~~~~~~  321 (351)
                      |++|++++|..||.+.+..+
T Consensus       222 ~il~~l~~g~~pf~~~~~~~  241 (362)
T 3pg1_A          222 CVMAEMFNRKALFRGSTFYN  241 (362)
T ss_dssp             HHHHHHHHSSCSCCCSSHHH
T ss_pred             HHHHHHHhCCCCCCCCCHHH
Confidence            99999999999998876433

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.97  E-value=4.2e-33  Score=270.18  Aligned_cols=196  Identities=21%  Similarity=0.230  Sum_probs=161.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|.+. .+..||||++.......+.+.+|+++|+.++|+|      |+++++++.. +.+|+||||+ 
T Consensus       190 ~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~-~~~~iv~e~~~  261 (452)
T 1fmk_A          190 VKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK------LVQLYAVVSE-EPIYIVTEYMS  261 (452)
T ss_dssp             EEEEECSSCEEEEEEET-TTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTT------BCCEEEEECS-SSCEEEECCCT
T ss_pred             eeecCCCCeEEEEEEEC-CCceEEEEEeccCCCCHHHHHHHHHHHHhCCCCC------EeeEEEEEcC-CceEEEehhhc
Confidence            57999999999999974 4567999999865555677899999999999887      9999999876 7899999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.......+++..+..++.|++.|                       |+|||+++++|||+|+.||.+.    
T Consensus       262 ~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~ivHrDlkp~Nill~----  314 (452)
T 1fmk_A          262 KGSLLDFLKGETGKYLRLPQLVDMAAQIASG-----------------------MAYVERMNYVHRDLRAANILVG----  314 (452)
T ss_dssp             TCBHHHHHSHHHHTTCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEEC----
T ss_pred             CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeCCCCChhhEEEC----
Confidence            8899999986533457788888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       315 --------------------------------------------------------------------------------  314 (452)
T 1fmk_A          315 --------------------------------------------------------------------------------  314 (452)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....+||+|||++......    .....+++.|+|||.+.+..++.++|+|||||++|++++ |..||.
T Consensus       315 -----------~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~  383 (452)
T 1fmk_A          315 -----------ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP  383 (452)
T ss_dssp             -----------GGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             -----------CCCCEEECCCccceecCCCceecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCC
Confidence                       2357999999998753221    123456778999999998999999999999999999999 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+++
T Consensus       384 ~~~~~~~~  391 (452)
T 1fmk_A          384 GMVNREVL  391 (452)
T ss_dssp             TCCHHHHH
T ss_pred             CCCHHHHH
Confidence            87765544

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.97  E-value=3.6e-33  Score=258.96  Aligned_cols=196  Identities=17%  Similarity=0.181  Sum_probs=159.3

Q ss_pred             ccccCcccceEEEEEEeecCcE----EEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSV----VALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~----vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++||+|+||+||+|.+..+++.    ||+|++....  .....+.+|+.+++.++|+|      |+++++++. .++.++
T Consensus        19 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~-~~~~~~   91 (325)
T 3kex_A           19 KVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAH------IVRLLGLCP-GSSLQL   91 (325)
T ss_dssp             EEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTT------BCCEEEEEC-BSSEEE
T ss_pred             eeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCC------cCeEEEEEc-CCccEE
Confidence            5799999999999999888776    6777764322  22345678999999998888      999999986 567999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.
T Consensus        92 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~Dikp~Nil  147 (325)
T 3kex_A           92 VTQYLPLGSLLDHVRQHR-GALGPQLLLNWGVQIAKG-----------------------MYYLEEHGMVHRNLAARNVL  147 (325)
T ss_dssp             EEECCTTCBSHHHHHSSG-GGSCTTHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSSTTEE
T ss_pred             EEEeCCCCCHHHHHHHcc-ccCCHHHHHHHHHHHHHH-----------------------HHHHHhCCCCCCccchheEE
Confidence            99999 899999997753 357788888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       148 ~~------------------------------------------------------------------------------  149 (325)
T 3kex_A          148 LK------------------------------------------------------------------------------  149 (325)
T ss_dssp             ES------------------------------------------------------------------------------
T ss_pred             EC------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                       ..+.+||+|||++.....     ......||+.|+|||.+.+..++.++|+|||||++|+++|
T Consensus       150 -----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~  212 (325)
T 3kex_A          150 -----------------SPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMT  212 (325)
T ss_dssp             -----------------SSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             -----------------CCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHh
Confidence                             235699999999875322     1234567779999999998999999999999999999999


Q ss_pred             -ccccccccCCCcee
Q psy2006         310 -GITLMARKTKTKYF  323 (351)
Q Consensus       310 -G~~pf~~~~~~~~~  323 (351)
                       |..||.+.+..+..
T Consensus       213 ~g~~p~~~~~~~~~~  227 (325)
T 3kex_A          213 FGAEPYAGLRLAEVP  227 (325)
T ss_dssp             TSCCTTTTSCTTHHH
T ss_pred             CCCCCccccCHHHHH
Confidence             99999987765543

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.97  E-value=1.1e-32  Score=252.36  Aligned_cols=190  Identities=19%  Similarity=0.196  Sum_probs=159.6

Q ss_pred             ccccCcccceEEEEE----EeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeE
Q psy2006           2 CSLNCVASNHVCTNV----VYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~----~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~   73 (351)
                      ++||+|+||+||+|+    +..+++.||+|++....  ...+.+.+|+++++.++|+|      |+++++++...  ..+
T Consensus        27 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~~  100 (302)
T 4e5w_A           27 RDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHEN------IVKYKGICTEDGGNGI  100 (302)
T ss_dssp             EEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTT------BCCEEEEEEC---CCE
T ss_pred             hccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCC------eeeeeeEEecCCCceE
Confidence            679999999999999    56789999999997532  23467889999999999877      99999999887  579


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++||||+ +++|.+++.... ..+++..+..++.|++.+                       |.|||++|++|+|+|+.|
T Consensus       101 ~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dikp~N  156 (302)
T 4e5w_A          101 KLIMEFLPSGSLKEYLPKNK-NKINLKQQLKYAVQICKG-----------------------MDYLGSRQYVHRDLAARN  156 (302)
T ss_dssp             EEEEECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGG
T ss_pred             EEEEEeCCCCcHHHHHHhcc-ccCCHHHHHHHHHHHHHH-----------------------HHHhhcCCcccCCCchhe
Confidence            9999999 889999997654 357888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       157 il~~----------------------------------------------------------------------------  160 (302)
T 4e5w_A          157 VLVE----------------------------------------------------------------------------  160 (302)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                         ..+.++|+|||++.....      ......||+.|+|||.+.+..++.++|+||+||++|+
T Consensus       161 -------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  221 (302)
T 4e5w_A          161 -------------------SEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHE  221 (302)
T ss_dssp             -------------------ETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHH
T ss_pred             -------------------CCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHH
Confidence                               235699999999875322      2234567888999999988889999999999999999


Q ss_pred             eccccccccc
Q psy2006         307 LYLGITLMAR  316 (351)
Q Consensus       307 l~tG~~pf~~  316 (351)
                      +++|..||..
T Consensus       222 l~~g~~p~~~  231 (302)
T 4e5w_A          222 LLTYCDSDSS  231 (302)
T ss_dssp             HHTTTCGGGS
T ss_pred             HHHccCCCcc
Confidence            9999998754

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.97  E-value=1.9e-32  Score=247.58  Aligned_cols=195  Identities=20%  Similarity=0.297  Sum_probs=158.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|.+..+++.||+|++....    ...+.+.+|+.+++.++|+|      |+++++++...++.++||
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~   90 (276)
T 2h6d_A           17 DTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPH------IIKLYQVISTPTDFFMVM   90 (276)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             eeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCC------EeEEEEEEecCCeEEEEE
Confidence            57999999999999998899999999997532    23456789999999999877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..+..++.|++.|                       |.|||++|++|+|+++.|+.+.
T Consensus        91 e~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl~p~Nil~~  145 (276)
T 2h6d_A           91 EYVSGGELFDYICKHG--RVEEMEARRLFQQILSA-----------------------VDYCHRHMVVHRDLKPENVLLD  145 (276)
T ss_dssp             ECCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHHCSSCCCCCGGGEEEC
T ss_pred             eccCCCcHHHHHhccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCccCCCChhhEEEC
Confidence            999 889999998765  57788888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (276)
T 2h6d_A          146 --------------------------------------------------------------------------------  145 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCC-CCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ....++|+|||++.....  ......|++.|+|||.+.+..+ +.++|+||||++++++++|..|
T Consensus       146 ---------------~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p  210 (276)
T 2h6d_A          146 ---------------AHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLP  210 (276)
T ss_dssp             ---------------TTSCEEECCCCGGGCCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCS
T ss_pred             ---------------CCCCEEEeecccccccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCC
Confidence                           235689999999875332  2345678999999999987765 6889999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |...+..+.
T Consensus       211 ~~~~~~~~~  219 (276)
T 2h6d_A          211 FDDEHVPTL  219 (276)
T ss_dssp             SCCSSHHHH
T ss_pred             CCCCcHHHH
Confidence            987655443

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.97  E-value=3.4e-33  Score=255.74  Aligned_cols=196  Identities=21%  Similarity=0.277  Sum_probs=161.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+||+||+|.+..+++.||+|++.... ...+.+.+|+.+++.+.|+|      |+++++++...+..++||||+
T Consensus        25 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~~   98 (302)
T 2j7t_A           25 GELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPY------IVKLLGAYYHDGKLWIMIEFC   98 (302)
T ss_dssp             EEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTT------BCCEEEEEECC-CEEEEEECC
T ss_pred             ceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCC------EeeeeeeeeeCCeEEEEEEeC
Confidence            57999999999999998899999999997542 33467788999999998877      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.... ..+++..++.++.|++.|                       |.|||+.|++|+|+++.||.+.   
T Consensus        99 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dlkp~Nil~~---  151 (302)
T 2j7t_A           99 PGGAVDAIMLELD-RGLTEPQIQVVCRQMLEA-----------------------LNFLHSKRIIHRDLKAGNVLMT---  151 (302)
T ss_dssp             TTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCSGGGEEEC---
T ss_pred             CCCcHHHHHHhhc-cCCCHHHHHHHHHHHHHH-----------------------HHHHhcCCcccCCCCHHHEEEC---
Confidence             889999987754 357888888888888888                       9999999999999999999886   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (302)
T 2j7t_A          152 --------------------------------------------------------------------------------  151 (302)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeee-----cCCCCCccceeeeeeeeEeecccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                  ..+.++|+|||++...   ........||+.|+|||.+.     +..++.++|+|||||++|+|++|.
T Consensus       152 ------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~  219 (302)
T 2j7t_A          152 ------------LEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIE  219 (302)
T ss_dssp             ------------TTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------CCCCEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCC
Confidence                        2356899999986532   12234467899999999984     566789999999999999999999


Q ss_pred             ccccccCCCce
Q psy2006         312 TLMARKTKTKY  322 (351)
Q Consensus       312 ~pf~~~~~~~~  322 (351)
                      .||...+..+.
T Consensus       220 ~p~~~~~~~~~  230 (302)
T 2j7t_A          220 PPHHELNPMRV  230 (302)
T ss_dssp             CTTTTSCHHHH
T ss_pred             CCCccCCHHHH
Confidence            99988765544

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.97  E-value=8.1e-33  Score=256.60  Aligned_cols=198  Identities=18%  Similarity=0.213  Sum_probs=158.9

Q ss_pred             ccccCcccceEEEEEEeecCcEE--EEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVV--ALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~v--AiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|++..+++.+  |+|.+...  ....+.+.+|+.+++.+ .|+|      |+++++++...++.|+|
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~------iv~~~~~~~~~~~~~lv  104 (327)
T 1fvr_A           31 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPN------IINLLGACEHRGYLYLA  104 (327)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTT------BCCEEEEEEETTEEEEE
T ss_pred             eeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCc------hhhhceeeeeCCceEEE
Confidence            57999999999999999888865  99999752  23345678899999999 7777      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcC--------------CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc
Q psy2006          77 FEIL-GLSVFDFLKENN--------------YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK  141 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~--------------~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  141 (351)
                      |||+ +++|.+++....              ...+++..+..++.|++.|                       |.|||++
T Consensus       105 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~  161 (327)
T 1fvr_A          105 IEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARG-----------------------MDYLSQK  161 (327)
T ss_dssp             ECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHH-----------------------HHHHHHT
T ss_pred             EecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHH-----------------------HHHHHhC
Confidence            9999 889999998753              1245555556655555555                       9999999


Q ss_pred             cccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         142 KREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       142 ~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                      |++|||+|+.||.+.                                                                 
T Consensus       162 ~ivH~dlkp~NIl~~-----------------------------------------------------------------  176 (327)
T 1fvr_A          162 QFIHRDLAARNILVG-----------------------------------------------------------------  176 (327)
T ss_dssp             TEECSCCSGGGEEEC-----------------------------------------------------------------
T ss_pred             CccCCCCccceEEEc-----------------------------------------------------------------
Confidence            999999999999886                                                                 


Q ss_pred             CCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceee
Q psy2006         222 DKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWS  299 (351)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~Diws  299 (351)
                                                    ....+||+|||++.....  ......+++.|+|||.+.+..++.++|+||
T Consensus       177 ------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~s  226 (327)
T 1fvr_A          177 ------------------------------ENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWS  226 (327)
T ss_dssp             ------------------------------GGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHH
T ss_pred             ------------------------------CCCeEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchH
Confidence                                          235799999999864222  223455678899999998888899999999


Q ss_pred             eeeeeEeecc-ccccccccCCCcee
Q psy2006         300 IGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       300 lG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      |||++|+|++ |..||.+.+..+.+
T Consensus       227 lG~il~ellt~g~~pf~~~~~~~~~  251 (327)
T 1fvr_A          227 YGVLLWEIVSLGGTPYCGMTCAELY  251 (327)
T ss_dssp             HHHHHHHHHTTSCCTTTTCCHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCcHHHHH
Confidence            9999999998 99999887765544

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.97  E-value=9.4e-33  Score=255.61  Aligned_cols=196  Identities=25%  Similarity=0.382  Sum_probs=160.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~   72 (351)
                      +.||+|+||+||+|.+..+++.||||++....         .....+.+|+++|+.+.|+|      |+++++++..+. 
T Consensus        16 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~-   88 (322)
T 2ycf_A           16 KTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPC------IIKIKNFFDAED-   88 (322)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTT------BCCEEEEEESSS-
T ss_pred             eEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCC------CceEeeEEcCCc-
Confidence            67999999999999999999999999996532         12235778999999999877      999999997654 


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      .|+||||+ +++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.
T Consensus        89 ~~lv~e~~~~~~L~~~~~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~ivH~dlkp~  143 (322)
T 2ycf_A           89 YYIVLELMEGGELFDKVVGNK--RLKEATCKLYFYQMLLA-----------------------VQYLHENGIIHRDLKPE  143 (322)
T ss_dssp             EEEEEECCTTEETHHHHSTTC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGG
T ss_pred             eEEEEecCCCCcHHHHHhccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCCHH
Confidence            89999999 889999987654  57888888888888888                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.+.+-|                                                                        
T Consensus       144 NIl~~~~~------------------------------------------------------------------------  151 (322)
T 2ycf_A          144 NVLLSSQE------------------------------------------------------------------------  151 (322)
T ss_dssp             GEEESSSS------------------------------------------------------------------------
T ss_pred             HEEEecCC------------------------------------------------------------------------
Confidence            99886210                                                                        


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceeccc--cccccccceeeCceeee---cCCCCCccceeeeeeeeEe
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPEVIL---ELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~--~~~~~gt~~y~aPE~~~---~~~~~~~~DiwslG~~l~~  306 (351)
                                          ....+||+|||++......  .....||+.|+|||++.   ...++.++|+|||||++|+
T Consensus       152 --------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~  211 (322)
T 2ycf_A          152 --------------------EDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFI  211 (322)
T ss_dssp             --------------------SSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHH
T ss_pred             --------------------CCCeEEEccCccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHH
Confidence                                1235999999998764322  23467899999999975   4567899999999999999


Q ss_pred             eccccccccccCCCc
Q psy2006         307 LYLGITLMARKTKTK  321 (351)
Q Consensus       307 l~tG~~pf~~~~~~~  321 (351)
                      +++|..||.......
T Consensus       212 l~~g~~pf~~~~~~~  226 (322)
T 2ycf_A          212 CLSGYPPFSEHRTQV  226 (322)
T ss_dssp             HHHSSCSSCSTTCSS
T ss_pred             HHhCCCCCcccchHH
Confidence            999999998766543

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.97  E-value=2.1e-32  Score=251.99  Aligned_cols=195  Identities=24%  Similarity=0.385  Sum_probs=157.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEe------------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD------------   68 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~------------   68 (351)
                      ++||+|+||+||+|.+..+++.||+|++... ....+.+.+|+++++.++|+|      |+++++++.            
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~~~   90 (320)
T 2i6l_A           17 KPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDN------IVKVFEILGPSGSQLTDDVGS   90 (320)
T ss_dssp             EECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTT------BCCEEEEECTTSCBCCC----
T ss_pred             EEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCC------eeEEEEecccccccccccccc
Confidence            6799999999999999889999999999753 334567789999999999877      999999884            


Q ss_pred             --eCCeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccc
Q psy2006          69 --YHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVR  146 (351)
Q Consensus        69 --~~~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~  146 (351)
                        ...+.|+||||++++|.+++...   ++++..++.++.|++.|                       |+|||++|++||
T Consensus        91 ~~~~~~~~lv~e~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~  144 (320)
T 2i6l_A           91 LTELNSVYIVQEYMETDLANVLEQG---PLLEEHARLFMYQLLRG-----------------------LKYIHSANVLHR  144 (320)
T ss_dssp             CCSCSEEEEEEECCSEEHHHHHTTC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCC
T ss_pred             ccccCceeEEeeccCCCHHHHhhcC---CccHHHHHHHHHHHHHH-----------------------HHHHHhCCEecC
Confidence              34589999999988999998653   57888888888888888                       999999999999


Q ss_pred             ccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         147 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      |+|+.||.+..                                                                     
T Consensus       145 dlkp~Nil~~~---------------------------------------------------------------------  155 (320)
T 2i6l_A          145 DLKPANLFINT---------------------------------------------------------------------  155 (320)
T ss_dssp             CCSGGGEEEET---------------------------------------------------------------------
T ss_pred             CCCHHHEEEcC---------------------------------------------------------------------
Confidence            99999998851                                                                     


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceec------cccccccccceeeCceeeec-CCCCCccceee
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD------EHHSTIVSTRHYRAPEVILE-LGWAQPCDVWS  299 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~------~~~~~~~gt~~y~aPE~~~~-~~~~~~~Diws  299 (351)
                                               ....+||+|||++....      .......+|+.|+|||.+.+ ..++.++|+||
T Consensus       156 -------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~s  210 (320)
T 2i6l_A          156 -------------------------EDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWA  210 (320)
T ss_dssp             -------------------------TTTEEEECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHH
T ss_pred             -------------------------CCCeEEEccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHh
Confidence                                     12468999999987532      12234567889999998876 67899999999


Q ss_pred             eeeeeEeeccccccccccCCCce
Q psy2006         300 IGCIIFELYLGITLMARKTKTKY  322 (351)
Q Consensus       300 lG~~l~~l~tG~~pf~~~~~~~~  322 (351)
                      |||++|++++|..||.+.+..+.
T Consensus       211 lG~il~el~~g~~pf~~~~~~~~  233 (320)
T 2i6l_A          211 AGCIFAEMLTGKTLFAGAHELEQ  233 (320)
T ss_dssp             HHHHHHHHHHSSCSSCCSSHHHH
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHH
Confidence            99999999999999988775443

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.97  E-value=1.9e-32  Score=256.39  Aligned_cols=192  Identities=25%  Similarity=0.403  Sum_probs=161.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC-----CeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH-----GHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~-----~~~~   74 (351)
                      +.||+|+||+||+|.+..+++.||||++...  ......+.+|+++++.++|+|      |+++++++...     ...|
T Consensus        17 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~~   90 (353)
T 2b9h_A           17 SLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHEN------IITIFNIQRPDSFENFNEVY   90 (353)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTT------BCCEEEECCCSCSTTCCCEE
T ss_pred             eEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCC------cCCeeeeecccccCccceEE
Confidence            5799999999999999889999999999642  233456778999999999877      99999988764     6899


Q ss_pred             EEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          75 IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        75 lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      +||||++++|.+++...   .+++..++.++.|++.|                       |.|||++|++|||+|+.||.
T Consensus        91 lv~e~~~~~L~~~~~~~---~~~~~~~~~~~~qi~~~-----------------------L~~LH~~~ivH~Dlkp~Nil  144 (353)
T 2b9h_A           91 IIQELMQTDLHRVISTQ---MLSDDHIQYFIYQTLRA-----------------------VKVLHGSNVIHRDLKPSNLL  144 (353)
T ss_dssp             EEECCCSEEHHHHHHHC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGEE
T ss_pred             EEEeccCccHHHHHhhc---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeecCCCCHHHeE
Confidence            99999988999998874   47888888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       145 ~~------------------------------------------------------------------------------  146 (353)
T 2b9h_A          145 IN------------------------------------------------------------------------------  146 (353)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            76                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-------------ccccccccceeeCceeeec-CCCCCccceeee
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------------HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSI  300 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------------~~~~~~gt~~y~aPE~~~~-~~~~~~~Diwsl  300 (351)
                                       ..+.+||+|||++.....             ......||+.|+|||++.+ ..++.++|+|||
T Consensus       147 -----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~sl  209 (353)
T 2b9h_A          147 -----------------SNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSC  209 (353)
T ss_dssp             -----------------TTCCEEECCCTTCEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHH
T ss_pred             -----------------CCCcEEEEecccccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHH
Confidence                             234689999998865321             1223578999999998765 677999999999


Q ss_pred             eeeeEeeccccccccccCCC
Q psy2006         301 GCIIFELYLGITLMARKTKT  320 (351)
Q Consensus       301 G~~l~~l~tG~~pf~~~~~~  320 (351)
                      ||++|+|++|..||.+.+..
T Consensus       210 G~il~~l~~g~~pf~~~~~~  229 (353)
T 2b9h_A          210 GCILAELFLRRPIFPGRDYR  229 (353)
T ss_dssp             HHHHHHHHHSSCSCCCSSHH
T ss_pred             HHHHHHHHhCCCCCCCCCcH
Confidence            99999999999999887643

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2.3e-32  Score=248.83  Aligned_cols=195  Identities=19%  Similarity=0.251  Sum_probs=163.0

Q ss_pred             cccCcccceEEEEEEe--ecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           3 SLNCVASNHVCTNVVY--EVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~--~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +||+|+||+||+|.++  .+++.||+|++...  ....+.+.+|+++++.++|+|      |+++++++ ..+..++|||
T Consensus        17 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~-~~~~~~lv~e   89 (287)
T 1u59_A           17 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPY------IVRLIGVC-QAEALMLVME   89 (287)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEE-ESSSEEEEEE
T ss_pred             cccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCC------EeEEEEEe-cCCCcEEEEE
Confidence            7999999999999864  46889999999763  344567889999999998877      99999999 5567999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++.... ..+++..+..++.|++.+                       |.|||++|++|+|+|+.||.+.+
T Consensus        90 ~~~~~~L~~~l~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dlkp~Nili~~  145 (287)
T 1u59_A           90 MAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMG-----------------------MKYLEEKNFVHRDLAARNVLLVN  145 (287)
T ss_dssp             CCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEEE
T ss_pred             eCCCCCHHHHHHhCC-ccCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeeCCCchheEEEcC
Confidence            99 789999987543 357888888888888888                       99999999999999999998872


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       146 --------------------------------------------------------------------------------  145 (287)
T 1u59_A          146 --------------------------------------------------------------------------------  145 (287)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-c
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-G  310 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G  310 (351)
                                     ...++|+|||++.....      ......+|+.|+|||++.+..++.++|+|||||++|++++ |
T Consensus       146 ---------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g  210 (287)
T 1u59_A          146 ---------------RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYG  210 (287)
T ss_dssp             ---------------TTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTS
T ss_pred             ---------------CCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCC
Confidence                           35689999999875322      1223456789999999988888999999999999999998 9


Q ss_pred             cccccccCCCcee
Q psy2006         311 ITLMARKTKTKYF  323 (351)
Q Consensus       311 ~~pf~~~~~~~~~  323 (351)
                      ..||...+..+..
T Consensus       211 ~~p~~~~~~~~~~  223 (287)
T 1u59_A          211 QKPYKKMKGPEVM  223 (287)
T ss_dssp             CCTTTTCCTHHHH
T ss_pred             CCCcccCCHHHHH
Confidence            9999887765543

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.97  E-value=1.1e-32  Score=247.99  Aligned_cols=193  Identities=12%  Similarity=0.117  Sum_probs=160.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~~lV   76 (351)
                      ++||+|+||+||+|++  .++.||+|++...   ....+.+.+|+.+++.++|+|      |+++++++...  ++.++|
T Consensus        16 ~~lg~G~~g~V~~~~~--~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~lv   87 (271)
T 3kmu_A           16 TKLNENHSGELWKGRW--QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPN------VLPVLGACQSPPAPHPTLI   87 (271)
T ss_dssp             EEEEEETTEEEEEEEE--TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTT------EECEEEEECTTTSSSCEEE
T ss_pred             HHhcCCCcceEEEEEE--CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCc------hhheEEEEccCCCCCeEee
Confidence            5799999999999996  5899999999754   233456889999999998877      99999999987  799999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc--ccccccCCCCe
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK--REVRRVRRCDI  153 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~d~k~~ni  153 (351)
                      |||+ +++|.+++.......+++..+..++.|++.|                       |.|||+++  ++|||+|+.|+
T Consensus        88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~~~i~H~dikp~Ni  144 (271)
T 3kmu_A           88 THWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARG-----------------------MAFLHTLEPLIPRHALNSRSV  144 (271)
T ss_dssp             EECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHH-----------------------HHHHTTSSSCCTTCCCSGGGE
T ss_pred             ecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHH-----------------------HHHHhcCCCceecCCCccceE
Confidence            9999 8899999988765568888888888888888                       99999999  99999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+                                                                            
T Consensus       145 l~~~----------------------------------------------------------------------------  148 (271)
T 3kmu_A          145 MIDE----------------------------------------------------------------------------  148 (271)
T ss_dssp             EECT----------------------------------------------------------------------------
T ss_pred             EEcC----------------------------------------------------------------------------
Confidence            8862                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCC---ccceeeeeeeeEeeccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIFELYLG  310 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~DiwslG~~l~~l~tG  310 (351)
                                         ...++++||++...  .......||+.|+|||.+.+...+.   ++|+|||||++|++++|
T Consensus       149 -------------------~~~~~l~~~~~~~~--~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g  207 (271)
T 3kmu_A          149 -------------------DMTARISMADVKFS--FQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTR  207 (271)
T ss_dssp             -------------------TSCEEEEGGGSCCT--TSCTTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHC
T ss_pred             -------------------CcceeEEeccceee--ecccCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhC
Confidence                               23466766665432  1223457899999999998765544   79999999999999999


Q ss_pred             cccccccCCCce
Q psy2006         311 ITLMARKTKTKY  322 (351)
Q Consensus       311 ~~pf~~~~~~~~  322 (351)
                      ..||.+.+..+.
T Consensus       208 ~~p~~~~~~~~~  219 (271)
T 3kmu_A          208 EVPFADLSNMEI  219 (271)
T ss_dssp             SCTTTTSCHHHH
T ss_pred             CCCccccChHHH
Confidence            999988766554

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.97  E-value=1.6e-32  Score=250.97  Aligned_cols=188  Identities=14%  Similarity=0.166  Sum_probs=153.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHH--hCCCCCCCCcceeeeeeeEeeC----CeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQK--IGEKDPNGRHLCVKMLDWFDYH----GHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~--l~h~~~~g~~~Iv~l~~~f~~~----~~~~l   75 (351)
                      ++||+|+||+||+|++  +++.||+|++....  .....+|..++..  ++|+|      |+++++++...    ..+|+
T Consensus        14 ~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~--~~~~~~e~~~~~~~~l~h~n------iv~~~~~~~~~~~~~~~~~l   83 (301)
T 3q4u_A           14 ECVGKGRYGEVWRGSW--QGENVAVKIFSSRD--EKSWFRETELYNTVMLRHEN------ILGFIASDMTSRHSSTQLWL   83 (301)
T ss_dssp             EEEEECSSEEEEEEEE--TTEEEEEEEECGGG--HHHHHHHHHHHHHTCCCCTT------BCCEEEEEEEEETTEEEEEE
T ss_pred             EeeccCCCcEEEEEEE--CCEEEEEEEecccc--chhhHHHHHHHHHhhccCcC------eeeEEEeeccccCCCceeEE
Confidence            6799999999999985  79999999997543  3455667777777  66666      99999987653    47999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccc--------ccccccc
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN--------KKKREVR  146 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH--------~~~i~h~  146 (351)
                      ||||+ +++|.++++..   .+++..+..++.|++.|                       |.|||        +.+++||
T Consensus        84 v~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~~~~~~~~~ivH~  137 (301)
T 3q4u_A           84 ITHYHEMGSLYDYLQLT---TLDTVSCLRIVLSIASG-----------------------LAHLHIEIFGTQGKPAIAHR  137 (301)
T ss_dssp             EECCCTTCBHHHHHTTC---CBCHHHHHHHHHHHHHH-----------------------HHHHHSCBCSTTCBCEEECS
T ss_pred             ehhhccCCCHHHHHhhc---ccCHHHHHHHHHHHHHH-----------------------HHHHHHhhhhccCCCCeecC
Confidence            99999 88999999653   57888888888888888                       99999        9999999


Q ss_pred             ccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         147 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      |+|+.|+.+.                                                                      
T Consensus       138 Dlkp~Nill~----------------------------------------------------------------------  147 (301)
T 3q4u_A          138 DLKSKNILVK----------------------------------------------------------------------  147 (301)
T ss_dssp             CCCGGGEEEC----------------------------------------------------------------------
T ss_pred             CCChHhEEEc----------------------------------------------------------------------
Confidence            9999999886                                                                      


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-------cccccccceeeCceeeecC------CCCC
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-------HSTIVSTRHYRAPEVILEL------GWAQ  293 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-------~~~~~gt~~y~aPE~~~~~------~~~~  293 (351)
                                               ....+||+|||++......       .....||+.|+|||++.+.      .++.
T Consensus       148 -------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  202 (301)
T 3q4u_A          148 -------------------------KNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYK  202 (301)
T ss_dssp             -------------------------TTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHH
T ss_pred             -------------------------CCCCEEEeeCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCc
Confidence                                     2357999999998653222       2335899999999999776      4457


Q ss_pred             ccceeeeeeeeEeeccc----------cccccccCCC
Q psy2006         294 PCDVWSIGCIIFELYLG----------ITLMARKTKT  320 (351)
Q Consensus       294 ~~DiwslG~~l~~l~tG----------~~pf~~~~~~  320 (351)
                      ++|+|||||++|+|+||          ..||......
T Consensus       203 ~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~  239 (301)
T 3q4u_A          203 RVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPN  239 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCS
T ss_pred             hhhHHHHHHHHHHHHhhhcCccccccccccccccCCC
Confidence            89999999999999999          8888765433

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.97  E-value=1.5e-32  Score=251.85  Aligned_cols=199  Identities=17%  Similarity=0.221  Sum_probs=164.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh-----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEe--eCCeE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD--YHGHM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~--~~~~~   73 (351)
                      .+.||+|+||.||+|.+..+++.||+|++....     ...+.+.+|+++++.++|+|      |+++++++.  ..++.
T Consensus        10 ~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~~   83 (305)
T 2wtk_C           10 GDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKN------VIQLVDVLYNEEKQKM   83 (305)
T ss_dssp             CCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTT------BCCEEEEEECC---CE
T ss_pred             eeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCC------eeEEEEEEEcCCCCeE
Confidence            367999999999999998999999999997542     23467889999999999877      999999984  45589


Q ss_pred             EEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          74 CIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        74 ~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |+||||+.++|.+++.......+++..+..++.|++.|                       |.|||++|++|+|+|+.||
T Consensus        84 ~lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------l~~LH~~~i~H~dlkp~NI  140 (305)
T 2wtk_C           84 YMVMEYCVCGMQEMLDSVPEKRFPVCQAHGYFCQLIDG-----------------------LEYLHSQGIVHKDIKPGNL  140 (305)
T ss_dssp             EEEEECCSEEHHHHHHHSTTCSCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGE
T ss_pred             EEEehhccCCHHHHHHhCcccccCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecCCCcccE
Confidence            99999997779998887765678888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       141 l~~-----------------------------------------------------------------------------  143 (305)
T 2wtk_C          141 LLT-----------------------------------------------------------------------------  143 (305)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            886                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeeecCCC--CCccceeeeeeeeEe
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVILELGW--AQPCDVWSIGCIIFE  306 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~--~~~~DiwslG~~l~~  306 (351)
                                        ....++|+|||.+....     .......||+.|+|||++.+...  +.++|+|||||++|+
T Consensus       144 ------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~  205 (305)
T 2wtk_C          144 ------------------TGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYN  205 (305)
T ss_dssp             ------------------TTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHH
T ss_pred             ------------------CCCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHH
Confidence                              23568999999986532     12234568999999999876443  778999999999999


Q ss_pred             eccccccccccCCCcee
Q psy2006         307 LYLGITLMARKTKTKYF  323 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~~  323 (351)
                      +++|..||.+.+..+.+
T Consensus       206 l~~g~~p~~~~~~~~~~  222 (305)
T 2wtk_C          206 ITTGLYPFEGDNIYKLF  222 (305)
T ss_dssp             HHHSSCSCCCSSHHHHH
T ss_pred             HHhCCCCCCCchHHHHH
Confidence            99999999887654443

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.97  E-value=1.5e-32  Score=255.13  Aligned_cols=198  Identities=20%  Similarity=0.271  Sum_probs=161.4

Q ss_pred             ccccCcccceEEEEEEeecC-----cEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVD-----SVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~-----~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||+|+||+||+|.+..++     +.||+|++...  ....+.+.+|+++|+.+ .|+|      |+++++++...+.+
T Consensus        52 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~------iv~~~~~~~~~~~~  125 (333)
T 2i1m_A           52 KTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHEN------IVNLLGACTHGGPV  125 (333)
T ss_dssp             EEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSC
T ss_pred             eEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCC------eeeEEEEEecCCce
Confidence            57999999999999986655     48999999754  23456788999999999 7777      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcC------------CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc
Q psy2006          74 CIAFEIL-GLSVFDFLKENN------------YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK  140 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~------------~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~  140 (351)
                      ++||||+ +++|.+++....            ...+++..+..++.|++.|                       |.|||+
T Consensus       126 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~lH~  182 (333)
T 2i1m_A          126 LVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQG-----------------------MAFLAS  182 (333)
T ss_dssp             EEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHH-----------------------HHHHHH
T ss_pred             EEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHH-----------------------HHHHhc
Confidence            9999999 889999997652            1234555566666666655                       999999


Q ss_pred             ccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCC
Q psy2006         141 KKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPF  220 (351)
Q Consensus       141 ~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~  220 (351)
                      +|++|||+|+.||.+.                                                                
T Consensus       183 ~~ivH~Dlkp~NIl~~----------------------------------------------------------------  198 (333)
T 2i1m_A          183 KNCIHRDVAARNVLLT----------------------------------------------------------------  198 (333)
T ss_dssp             TTEECSCCSGGGCEEE----------------------------------------------------------------
T ss_pred             CCcccCCcccceEEEC----------------------------------------------------------------
Confidence            9999999999999887                                                                


Q ss_pred             CCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCcc
Q psy2006         221 FDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPC  295 (351)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~  295 (351)
                                                     ....++|+|||++......     .....+|+.|+|||.+.+..++.++
T Consensus       199 -------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  247 (333)
T 2i1m_A          199 -------------------------------NGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQS  247 (333)
T ss_dssp             -------------------------------GGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHH
T ss_pred             -------------------------------CCCeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHH
Confidence                                           2357999999998753221     2335567889999999988999999


Q ss_pred             ceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         296 DVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       296 DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      |+|||||++|+|+| |..||.+....+.+
T Consensus       248 Di~slG~il~el~t~g~~p~~~~~~~~~~  276 (333)
T 2i1m_A          248 DVWSYGILLWEIFSLGLNPYPGILVNSKF  276 (333)
T ss_dssp             HHHHHHHHHHHHTTTSCCSSTTCCSSHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCcccchhHHH
Confidence            99999999999998 99999887655443

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.97  E-value=9.9e-33  Score=256.40  Aligned_cols=196  Identities=16%  Similarity=0.194  Sum_probs=158.1

Q ss_pred             ccccCcccceEEEEEEeecCcEE----EEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVV----ALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~v----AiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      ++||+|+||+||+|.+..+++.|    |+|.+...  ....+.+.+|+.+++.++|+|      |+++++++..+. .++
T Consensus        21 ~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~-~~~   93 (327)
T 3lzb_A           21 KVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH------VCRLLGICLTST-VQL   93 (327)
T ss_dssp             EEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTT------BCCCCEEEESSS-EEE
T ss_pred             EEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCC------eeEEEEEEecCC-ceE
Confidence            67999999999999998888766    55555432  234567889999999999887      999999998765 788


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |+|++ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.
T Consensus        94 v~~~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~Dikp~NIl  149 (327)
T 3lzb_A           94 ITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKG-----------------------MNYLEDRRLVHRDLAARNVL  149 (327)
T ss_dssp             EECCCSSCBHHHHHHHTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEE
T ss_pred             EEEecCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHhhCCCcCCCCCHHHEE
Confidence            89988 999999998764 357888888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       150 ~~------------------------------------------------------------------------------  151 (327)
T 3lzb_A          150 VK------------------------------------------------------------------------------  151 (327)
T ss_dssp             EE------------------------------------------------------------------------------
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            87                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                       ....+||+|||++.....     ......+|+.|+|||.+.+..++.++|+|||||++|++++
T Consensus       152 -----------------~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~  214 (327)
T 3lzb_A          152 -----------------TPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMT  214 (327)
T ss_dssp             -----------------ETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred             -----------------CCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHH
Confidence                             235699999999875322     1223456788999999999999999999999999999999


Q ss_pred             -ccccccccCCCcee
Q psy2006         310 -GITLMARKTKTKYF  323 (351)
Q Consensus       310 -G~~pf~~~~~~~~~  323 (351)
                       |..||.+.+..++.
T Consensus       215 ~g~~p~~~~~~~~~~  229 (327)
T 3lzb_A          215 FGSKPYDGIPASEIS  229 (327)
T ss_dssp             TSCCTTTTCCGGGHH
T ss_pred             CCCCCCCCCCHHHHH
Confidence             99999887766553

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.97  E-value=9.6e-33  Score=254.12  Aligned_cols=190  Identities=22%  Similarity=0.291  Sum_probs=152.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      +.||+|+||+||+|.+  .++.||+|++... ...+.+.+|+++|++++|+|      |+++++++.  +..|+||||+ 
T Consensus        14 ~~lg~G~~g~V~~~~~--~~~~vavK~~~~~-~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~--~~~~lv~e~~~   82 (307)
T 2eva_A           14 EVVGRGAFGVVCKAKW--RAKDVAIKQIESE-SERKAFIVELRQLSRVNHPN------IVKLYGACL--NPVCLVMEYAE   82 (307)
T ss_dssp             EEEECCSSSEEEEEEE--TTEEEEEEECSST-THHHHHHHHHHHHHHCCCTT------BCCEEEBCT--TTTEEEEECCT
T ss_pred             eEeecCCCceEEEEEE--CCeeEEEEEecCh-hHHHHHHHHHHHHhcCCCCC------cCeEEEEEc--CCcEEEEEcCC
Confidence            5799999999999985  5889999999753 34567889999999999887      999999887  4589999999 


Q ss_pred             CCCHHHHHHhcCCC-CCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc---ccccccccCCCCeEEe
Q psy2006          81 GLSVFDFLKENNYL-PYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK---KKREVRRVRRCDIRLI  156 (351)
Q Consensus        81 g~sL~~~l~~~~~~-~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~---~~i~h~d~k~~ni~l~  156 (351)
                      +++|.+++...... .+++..+..++.|++.|                       |.|||+   +|++|||+|+.||.+.
T Consensus        83 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~-----------------------l~~LH~~~~~~ivH~dlkp~NIll~  139 (307)
T 2eva_A           83 GGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQG-----------------------VAYLHSMQPKALIHRDLKPPNLLLV  139 (307)
T ss_dssp             TCBHHHHHHCSSSEECCCHHHHHHHHHHHHHH-----------------------HHHHHTCSSSCCCCCCCSGGGEEEE
T ss_pred             CCCHHHHHhccCCCCccCHHHHHHHHHHHHHH-----------------------HHHHHhCCCCCeecCCCChhHEEEe
Confidence            88999999876422 35666777777777777                       999999   8999999999999987


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                                                                               
T Consensus       140 ~-------------------------------------------------------------------------------  140 (307)
T 2eva_A          140 A-------------------------------------------------------------------------------  140 (307)
T ss_dssp             T-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                     ....+||+|||++...........||+.|+|||++.+..++.++|+|||||++|++++|..||..
T Consensus       141 ---------------~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~  205 (307)
T 2eva_A          141 ---------------GGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDE  205 (307)
T ss_dssp             ---------------TTTEEEECCCCC------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTT
T ss_pred             ---------------CCCEEEEcccccccccccccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchh
Confidence                           11247999999987655545566799999999999888899999999999999999999999986


Q ss_pred             cCC
Q psy2006         317 KTK  319 (351)
Q Consensus       317 ~~~  319 (351)
                      ...
T Consensus       206 ~~~  208 (307)
T 2eva_A          206 IGG  208 (307)
T ss_dssp             TCS
T ss_pred             hCc
Confidence            544

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.97  E-value=3.6e-32  Score=250.08  Aligned_cols=193  Identities=20%  Similarity=0.254  Sum_probs=153.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|.+..+++.||+|++...    ....+.+.+|+.+++.++|+|      |+++++++...+..++||
T Consensus        38 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~  111 (310)
T 2wqm_A           38 KKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPN------VIKYYASFIEDNELNIVL  111 (310)
T ss_dssp             EEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTT------BCCEEEEEEETTEEEEEE
T ss_pred             EeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCC------EeeEEEEEEcCCcEEEEE
Confidence            5799999999999999899999999999742    334566789999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          78 EIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        78 E~~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||+ +++|.+++...  ....+++..+..++.|++.|                       |.|||++|++|+|+++.||.
T Consensus       112 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~i~H~dl~p~NIl  168 (310)
T 2wqm_A          112 ELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSA-----------------------LEHMHSRRVMHRDIKPANVF  168 (310)
T ss_dssp             ECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGGEE
T ss_pred             ecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHH-----------------------HHHHhhCCeeCCCCcHHHEE
Confidence            999 78999999753  23457778888888888877                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       169 ~~------------------------------------------------------------------------------  170 (310)
T 2wqm_A          169 IT------------------------------------------------------------------------------  170 (310)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                       ..+.++|+|||++.....   ......|++.|+|||.+.+..++.++|+|||||++|++++|.
T Consensus       171 -----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~  233 (310)
T 2wqm_A          171 -----------------ATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQ  233 (310)
T ss_dssp             -----------------TTSCEEECCC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             -----------------CCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCC
Confidence                             235689999999865322   223457899999999998888999999999999999999999


Q ss_pred             ccccccC
Q psy2006         312 TLMARKT  318 (351)
Q Consensus       312 ~pf~~~~  318 (351)
                      .||.+..
T Consensus       234 ~p~~~~~  240 (310)
T 2wqm_A          234 SPFYGDK  240 (310)
T ss_dssp             CTTC---
T ss_pred             CCCcccc
Confidence            9997754

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.97  E-value=1.2e-32  Score=254.63  Aligned_cols=197  Identities=17%  Similarity=0.205  Sum_probs=161.8

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|.+.     .+++.||+|++....  .....+.+|+.+++.+.|+|      |+++++++...+..+
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~  104 (322)
T 1p4o_A           31 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHH------VVRLLGVVSQGQPTL  104 (322)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTT------BCCEEEEECSSSSCE
T ss_pred             eEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCC------EeeeEEEEccCCccE
Confidence            57999999999999987     468899999997532  33456789999999999877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCC--------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccc
Q psy2006          75 IAFEIL-GLSVFDFLKENNY--------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREV  145 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~--------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h  145 (351)
                      +||||+ +++|.+++.....        ..+++..+..++.|++.|                       |.|||++|++|
T Consensus       105 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~i~H  161 (322)
T 1p4o_A          105 VIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADG-----------------------MAYLNANKFVH  161 (322)
T ss_dssp             EEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBC
T ss_pred             EEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHH-----------------------HHHHHHCCCcc
Confidence            999999 8899999976421        234556666666666666                       99999999999


Q ss_pred             cccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         146 RRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       146 ~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      ||+|+.||.+.                                                                     
T Consensus       162 ~dikp~NIli~---------------------------------------------------------------------  172 (322)
T 1p4o_A          162 RDLAARNCMVA---------------------------------------------------------------------  172 (322)
T ss_dssp             SCCSGGGEEEC---------------------------------------------------------------------
T ss_pred             CCCccceEEEc---------------------------------------------------------------------
Confidence            99999999886                                                                     


Q ss_pred             chhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeee
Q psy2006         226 SSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSI  300 (351)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  300 (351)
                                                ....+||+|||++.....     ......+|+.|+|||.+.+..++.++|+||+
T Consensus       173 --------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  226 (322)
T 1p4o_A          173 --------------------------EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSF  226 (322)
T ss_dssp             --------------------------TTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHH
T ss_pred             --------------------------CCCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHH
Confidence                                      235689999999865322     1234566889999999988889999999999


Q ss_pred             eeeeEeecc-ccccccccCCCce
Q psy2006         301 GCIIFELYL-GITLMARKTKTKY  322 (351)
Q Consensus       301 G~~l~~l~t-G~~pf~~~~~~~~  322 (351)
                      ||++|++++ |..||.+.+..+.
T Consensus       227 G~il~el~~~g~~p~~~~~~~~~  249 (322)
T 1p4o_A          227 GVVLWEIATLAEQPYQGLSNEQV  249 (322)
T ss_dssp             HHHHHHHHHTSCCTTTTSCHHHH
T ss_pred             HHHHHHHHhcCCCccccCCHHHH
Confidence            999999999 8999988765544

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.97  E-value=1.2e-32  Score=250.70  Aligned_cols=198  Identities=24%  Similarity=0.371  Sum_probs=166.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|.+..+++.||+|++....   ...+.+.+|+++++.++|+|      |+++++++...+..++|||
T Consensus        28 ~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e  101 (287)
T 2wei_A           28 CMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPN------IMKLFEILEDSSSFYIVGE  101 (287)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTT------BCCEEEEEECSSEEEEEEC
T ss_pred             EEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCC------ccEEEEEEeCCCeEEEEEE
Confidence            67999999999999998899999999996532   23567889999999998877      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++....  .+++..+..++.|++.+                       |.|||++|++|+|+++.||.+..
T Consensus       102 ~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~i~H~dl~p~NIlv~~  156 (287)
T 2wei_A          102 LYTGGELFDEIIKRK--RFSEHDAARIIKQVFSG-----------------------ITYMHKHNIVHRDLKPENILLES  156 (287)
T ss_dssp             CCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEESC
T ss_pred             ccCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCChhhEEEec
Confidence            99 899999987764  57888888888888888                       99999999999999999998861


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                      -+                                                                              
T Consensus       157 ~~------------------------------------------------------------------------------  158 (287)
T 2wei_A          157 KE------------------------------------------------------------------------------  158 (287)
T ss_dssp             SS------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                    ....+||+|||++.....  ......||+.|+|||.+.+ .++.++|+|||||+++++++|..||.
T Consensus       159 --------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~  223 (287)
T 2wei_A          159 --------------KDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFY  223 (287)
T ss_dssp             --------------TTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             --------------CcccEEEeccCcceeecCCCccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCC
Confidence                          124689999998865322  2344568899999998855 58899999999999999999999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+..
T Consensus       224 ~~~~~~~~  231 (287)
T 2wei_A          224 GKNEYDIL  231 (287)
T ss_dssp             CSSHHHHH
T ss_pred             CCCHHHHH
Confidence            87765543

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.97  E-value=1.9e-32  Score=254.86  Aligned_cols=198  Identities=19%  Similarity=0.281  Sum_probs=160.4

Q ss_pred             ccccCcccceEEEEEEe-------ecCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVY-------EVDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-------~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      +.||+|+||+||+|.+.       .+++.||+|++...  ....+.+.+|+++++.+ .|+|      |+++++++...+
T Consensus        41 ~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~------iv~~~~~~~~~~  114 (334)
T 2pvf_A           41 KPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKN------IINLLGACTQDG  114 (334)
T ss_dssp             EEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSSS
T ss_pred             eEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCC------EeeEEEEEccCC
Confidence            57999999999999975       46789999999753  23446678999999999 7777      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhh
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD  136 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~  136 (351)
                      .+++||||+ +++|.+++.....              ..+++..+..++.|++.|                       |.
T Consensus       115 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~  171 (334)
T 2pvf_A          115 PLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARG-----------------------ME  171 (334)
T ss_dssp             CCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHH-----------------------HH
T ss_pred             ceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHH-----------------------HH
Confidence            999999999 8899999987642              125555566666666665                       99


Q ss_pred             ccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhh
Q psy2006         137 YNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEAL  216 (351)
Q Consensus       137 ~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l  216 (351)
                      |||++|++|||+|+.||.+.                                                            
T Consensus       172 ~LH~~~ivH~Dlkp~NIll~------------------------------------------------------------  191 (334)
T 2pvf_A          172 YLASQKCIHRDLAARNVLVT------------------------------------------------------------  191 (334)
T ss_dssp             HHHHTTEECSCCSGGGEEEC------------------------------------------------------------
T ss_pred             HHHhCCeeCCCCccceEEEc------------------------------------------------------------
Confidence            99999999999999999886                                                            


Q ss_pred             cCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCC
Q psy2006         217 RHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGW  291 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~  291 (351)
                                                         ....+||+|||++.....     ......+|+.|+|||++.+..+
T Consensus       192 -----------------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  236 (334)
T 2pvf_A          192 -----------------------------------ENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVY  236 (334)
T ss_dssp             -----------------------------------TTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEE
T ss_pred             -----------------------------------CCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCc
Confidence                                               235689999999875332     1233456788999999988888


Q ss_pred             CCccceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         292 AQPCDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       292 ~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +.++|+|||||++|++++ |..||.+.+..+++
T Consensus       237 ~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~  269 (334)
T 2pvf_A          237 THQSDVWSFGVLMWEIFTLGGSPYPGIPVEELF  269 (334)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHH
Confidence            999999999999999999 99999887665544

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.97  E-value=6e-33  Score=251.40  Aligned_cols=196  Identities=19%  Similarity=0.256  Sum_probs=163.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      +.||+|+||+||+|.+ .+++.||+|++.......+.+.+|+++++.+.|+|      |+++++++. .+..++||||+ 
T Consensus        19 ~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~-~~~~~~v~e~~~   90 (279)
T 1qpc_A           19 ERLGAGQFGEVWMGYY-NGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR------LVRLYAVVT-QEPIYIITEYME   90 (279)
T ss_dssp             EEEEEETTEEEEEEEE-TTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTT------BCCEEEEEC-SSSCEEEEECCT
T ss_pred             eeecCCCCeEEEEEEE-cCCcEEEEEEecCCcccHHHHHHHHHHHHhCCCcC------cceEEEEEc-CCCcEEEEecCC
Confidence            5799999999999996 46778999999865555677889999999998877      999999986 45789999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.......+++..+..++.|++.|                       |.|||++|++|+|+|+.||.+.    
T Consensus        91 ~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~i~H~dikp~Nil~~----  143 (279)
T 1qpc_A           91 NGSLVDFLKTPSGIKLTINKLLDMAAQIAEG-----------------------MAFIEERNYIHRDLRAANILVS----  143 (279)
T ss_dssp             TCBHHHHTTSHHHHTCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEEC----
T ss_pred             CCCHHHHHhcCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeccCCCHhhEEEc----
Confidence            8999999976533357777788888888777                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (279)
T 1qpc_A          144 --------------------------------------------------------------------------------  143 (279)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....++|+|||++......    .....+++.|+|||.+.+..++.++|+|||||+++++++ |..||.
T Consensus       144 -----------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~  212 (279)
T 1qpc_A          144 -----------DTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP  212 (279)
T ss_dssp             -----------TTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             -----------CCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCc
Confidence                       2356899999998764321    223456778999999988888999999999999999999 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+.+
T Consensus       213 ~~~~~~~~  220 (279)
T 1qpc_A          213 GMTNPEVI  220 (279)
T ss_dssp             TCCHHHHH
T ss_pred             ccCHHHHH
Confidence            87665543

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.97  E-value=1.3e-32  Score=277.10  Aligned_cols=194  Identities=18%  Similarity=0.239  Sum_probs=160.6

Q ss_pred             cccCcccceEEEEEEe--ecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           3 SLNCVASNHVCTNVVY--EVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~--~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +||+|+||+||+|.+.  .+++.||||+++...   ...+.+.+|+++|++++|+|      |+++++++. .+..++||
T Consensus       376 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpn------Iv~l~~~~~-~~~~~lv~  448 (635)
T 4fl3_A          376 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPY------IVRMIGICE-AESWMLVM  448 (635)
T ss_dssp             EEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTT------BCCEEEEEE-SSSEEEEE
T ss_pred             EeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCC------EeeEEEEEe-cCCEEEEE
Confidence            6999999999999654  467899999997542   23467889999999999877      999999996 45689999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..+..++.|++.|                       |.|||++|++|||+|+.||.+.
T Consensus       449 E~~~~g~L~~~l~~~~--~l~~~~~~~i~~qi~~~-----------------------L~yLH~~~iiHrDLkp~NILl~  503 (635)
T 4fl3_A          449 EMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMG-----------------------MKYLEESNFVHRDLAARNVLLV  503 (635)
T ss_dssp             ECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEEE
T ss_pred             EccCCCCHHHHHhhCC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEeCCCCChHhEEEe
Confidence            999 899999998754  57788888888888888                       9999999999999999999987


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +                                                                               
T Consensus       504 ~-------------------------------------------------------------------------------  504 (635)
T 4fl3_A          504 T-------------------------------------------------------------------------------  504 (635)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            2                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-  309 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-  309 (351)
                                      ...+||+|||++.....      ......+|+.|+|||++.+..++.++|||||||++|+|++ 
T Consensus       505 ----------------~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~  568 (635)
T 4fl3_A          505 ----------------QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSY  568 (635)
T ss_dssp             ----------------TTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             ----------------CCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhC
Confidence                            35699999999865321      1223456788999999999999999999999999999998 


Q ss_pred             ccccccccCCCcee
Q psy2006         310 GITLMARKTKTKYF  323 (351)
Q Consensus       310 G~~pf~~~~~~~~~  323 (351)
                      |..||.+.+..++.
T Consensus       569 G~~Pf~~~~~~~~~  582 (635)
T 4fl3_A          569 GQKPYRGMKGSEVT  582 (635)
T ss_dssp             TCCSSTTCCHHHHH
T ss_pred             CCCCCCCCCHHHHH
Confidence            99999988776654

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.97  E-value=9.8e-33  Score=272.98  Aligned_cols=196  Identities=21%  Similarity=0.227  Sum_probs=164.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|.+. .+..||||++.......+.+.+|+++|+.++|+|      |+++++++.. +.+||||||+ 
T Consensus       273 ~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~E~~~l~~l~hpn------iv~~~~~~~~-~~~~lv~e~~~  344 (535)
T 2h8h_A          273 VKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK------LVQLYAVVSE-EPIYIVTEYMS  344 (535)
T ss_dssp             EEEEECSSEEEEEEEET-TTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTT------BCCEEEEECS-SSCEEEECCCT
T ss_pred             eecccCCCeEEEEEEEC-CCceEEEEEeCCCCCCHHHHHHHHHHHHhCCCCC------EeeEEEEEee-ccceEeeehhc
Confidence            57999999999999974 4567999999865555677899999999999887      9999999876 7899999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.++++......+++..+..++.|++.|                       |+|||+++++|||+|+.||.+.    
T Consensus       345 ~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivHrDlkp~NIll~----  397 (535)
T 2h8h_A          345 KGSLLDFLKGETGKYLRLPQLVDMAAQIASG-----------------------MAYVERMNYVHRDLRAANILVG----  397 (535)
T ss_dssp             TEEHHHHHSHHHHTTCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEEC----
T ss_pred             CCcHHHHHhhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeCCCCCHhhEEEc----
Confidence            8899999986533357777888888888887                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       398 --------------------------------------------------------------------------------  397 (535)
T 2h8h_A          398 --------------------------------------------------------------------------------  397 (535)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ....+||+|||++.....    ......++..|+|||++.+..++.++|||||||++|+|++ |..||.
T Consensus       398 -----------~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~  466 (535)
T 2h8h_A          398 -----------ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP  466 (535)
T ss_dssp             -----------GGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSST
T ss_pred             -----------CCCcEEEcccccceecCCCceecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCC
Confidence                       235799999999875332    1223456778999999998899999999999999999999 999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+++
T Consensus       467 ~~~~~~~~  474 (535)
T 2h8h_A          467 GMVNREVL  474 (535)
T ss_dssp             TCCHHHHH
T ss_pred             CCCHHHHH
Confidence            87765544

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.97  E-value=1.7e-32  Score=254.40  Aligned_cols=201  Identities=18%  Similarity=0.201  Sum_probs=160.3

Q ss_pred             ccccCcccceEEEEE-----EeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNV-----VYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~-----~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|.     +..+++.||+|++...  ......+.+|+.+++.+.|+|      |+++++++...+..|
T Consensus        36 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~  109 (327)
T 2yfx_A           36 RGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQN------IVRCIGVSLQSLPRF  109 (327)
T ss_dssp             EECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSCE
T ss_pred             EEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCC------CCeEEEEEcCCCCcE
Confidence            679999999999999     5568889999999642  334556788999999998877      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCC-----CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccccc
Q psy2006          75 IAFEIL-GLSVFDFLKENNY-----LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV  148 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~-----~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~  148 (351)
                      +||||+ +++|.+++.....     ..+++..+..++.|++.|                       |.|||++|++|||+
T Consensus       110 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------l~~LH~~~i~H~dl  166 (327)
T 2yfx_A          110 ILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACG-----------------------CQYLEENHFIHRDI  166 (327)
T ss_dssp             EEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCC
T ss_pred             EEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHH-----------------------HHHHhhCCeecCcC
Confidence            999999 8999999987642     236666677777777777                       99999999999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      |+.||.+..-|                                                                     
T Consensus       167 kp~NIli~~~~---------------------------------------------------------------------  177 (327)
T 2yfx_A          167 AARNCLLTCPG---------------------------------------------------------------------  177 (327)
T ss_dssp             CGGGEEESCSS---------------------------------------------------------------------
T ss_pred             CHhHEEEecCC---------------------------------------------------------------------
Confidence            99999886211                                                                     


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeeecCCCCCccceeeeeee
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCI  303 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~  303 (351)
                                             ....++|+|||++....     .......||+.|+|||.+.+..++.++|+|||||+
T Consensus       178 -----------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~i  234 (327)
T 2yfx_A          178 -----------------------PGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVL  234 (327)
T ss_dssp             -----------------------TTCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHH
T ss_pred             -----------------------CcceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHH
Confidence                                   12458999999886421     12234567889999999988899999999999999


Q ss_pred             eEeecc-ccccccccCCCcee
Q psy2006         304 IFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       304 l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +|+|+| |..||...+..+..
T Consensus       235 l~ellt~g~~p~~~~~~~~~~  255 (327)
T 2yfx_A          235 LWEIFSLGYMPYPSKSNQEVL  255 (327)
T ss_dssp             HHHHHTTSCCSSTTCCHHHHH
T ss_pred             HHHHHcCCCCCCCCcCHHHHH
Confidence            999998 99999887655443

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.97  E-value=1.9e-32  Score=255.95  Aligned_cols=192  Identities=17%  Similarity=0.290  Sum_probs=164.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhh------------------HHHHHHHHHHHHhCCCCCCCCcceeee
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYR------------------EAARLEINALQKIGEKDPNGRHLCVKM   63 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~------------------~~~~~E~~~l~~l~h~~~~g~~~Iv~l   63 (351)
                      +.||+|+||+||+|.+  +++.||+|++.......                  +.+.+|+++++.++|+|      |+++
T Consensus        37 ~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~  108 (348)
T 2pml_X           37 RTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEY------CLTC  108 (348)
T ss_dssp             EEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTT------BCCC
T ss_pred             EEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCC------cceE
Confidence            5799999999999997  99999999997543211                  77889999999999877      9999


Q ss_pred             eeeEeeCCeEEEEEecc-CCCHHHH------HHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhh
Q psy2006          64 LDWFDYHGHMCIAFEIL-GLSVFDF------LKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD  136 (351)
Q Consensus        64 ~~~f~~~~~~~lV~E~~-g~sL~~~------l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~  136 (351)
                      ++++...++.++||||+ +++|.++      +.......+++..++.++.|++.|                       |.
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~  165 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNS-----------------------FS  165 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHH-----------------------HH
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHH-----------------------HH
Confidence            99999999999999999 7799998      655434567888888888888888                       99


Q ss_pred             cccc-ccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhh
Q psy2006         137 YNNK-KKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEA  215 (351)
Q Consensus       137 ~lH~-~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~  215 (351)
                      |||+ .|++|+|+++.||.+.                                                           
T Consensus       166 ~lH~~~~i~H~dl~p~Nil~~-----------------------------------------------------------  186 (348)
T 2pml_X          166 YIHNEKNICHRDVKPSNILMD-----------------------------------------------------------  186 (348)
T ss_dssp             HHHHTSCEECCCCCGGGEEEC-----------------------------------------------------------
T ss_pred             HHhccCCEeecCCChHhEEEc-----------------------------------------------------------
Confidence            9999 9999999999999886                                                           


Q ss_pred             hcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCccee-ccccccccccceeeCceeeecC-CCCC
Q psy2006         216 LRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD-DEHHSTIVSTRHYRAPEVILEL-GWAQ  293 (351)
Q Consensus       216 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-~~~~~~~~gt~~y~aPE~~~~~-~~~~  293 (351)
                                                          ....++|+|||.+... ........|++.|+|||.+.+. .++.
T Consensus       187 ------------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  230 (348)
T 2pml_X          187 ------------------------------------KNGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNG  230 (348)
T ss_dssp             ------------------------------------TTSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEH
T ss_pred             ------------------------------------CCCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCc
Confidence                                                2356999999998763 3334557889999999999877 5655


Q ss_pred             -ccceeeeeeeeEeeccccccccccCC
Q psy2006         294 -PCDVWSIGCIIFELYLGITLMARKTK  319 (351)
Q Consensus       294 -~~DiwslG~~l~~l~tG~~pf~~~~~  319 (351)
                       ++|+||+||+++++++|..||...+.
T Consensus       231 ~~~Di~slG~il~~l~~g~~pf~~~~~  257 (348)
T 2pml_X          231 AKVDIWSLGICLYVMFYNVVPFSLKIS  257 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSSCCSSC
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence             89999999999999999999988776

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.97  E-value=2.5e-32  Score=253.26  Aligned_cols=193  Identities=18%  Similarity=0.208  Sum_probs=162.9

Q ss_pred             ccccCcccceEEEEE----EeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee--CCeEE
Q psy2006           2 CSLNCVASNHVCTNV----VYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY--HGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~----~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~--~~~~~   74 (351)
                      ++||+|+||+||+|+    +..+++.||+|++... ....+.+.+|+++++.+.|+|      |+++++++..  .+.+|
T Consensus        29 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~~~  102 (327)
T 3lxl_A           29 SQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDF------IVKYRGVSYGPGRQSLR  102 (327)
T ss_dssp             EEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTT------BCCEEEEEECSSSCEEE
T ss_pred             hhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCc------eeEEEEEEecCCCceEE
Confidence            679999999999999    5678999999999754 334466889999999998877      9999999874  45899


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++.... ..+++..+..++.|++.+                       |.|||++|++|+|+|++||
T Consensus       103 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~ivH~Dikp~NI  158 (327)
T 3lxl_A          103 LVMEYLPSGCLRDFLQRHR-ARLDASRLLLYSSQICKG-----------------------MEYLGSRRCVHRDLAARNI  158 (327)
T ss_dssp             EEEECCTTCBHHHHHHHHG-GGCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGE
T ss_pred             EEEeecCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccCCCCChhhE
Confidence            999999 999999998754 257788888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+                                                                            
T Consensus       159 l~~~----------------------------------------------------------------------------  162 (327)
T 3lxl_A          159 LVES----------------------------------------------------------------------------  162 (327)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             EECC----------------------------------------------------------------------------
Confidence            8862                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                         ...++|+|||++.....      ......||+.|+|||.+.+..++.++|+|||||+++++
T Consensus       163 -------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  223 (327)
T 3lxl_A          163 -------------------EAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYEL  223 (327)
T ss_dssp             -------------------TTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHH
T ss_pred             -------------------CCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHH
Confidence                               35699999999875322      22345678889999999888889999999999999999


Q ss_pred             ccccccccccCC
Q psy2006         308 YLGITLMARKTK  319 (351)
Q Consensus       308 ~tG~~pf~~~~~  319 (351)
                      ++|..||.....
T Consensus       224 l~g~~p~~~~~~  235 (327)
T 3lxl_A          224 FTYCDKSCSPSA  235 (327)
T ss_dssp             HTTTCGGGSHHH
T ss_pred             HhCCCCCccccc
Confidence            999999976553

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=3.4e-32  Score=253.33  Aligned_cols=197  Identities=18%  Similarity=0.202  Sum_probs=159.1

Q ss_pred             ccccCcccceEEEEEEeecC----cEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVD----SVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~----~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +.||+|+||+||+|.+..++    ..||+|++...  ......+.+|+++++.+.|+|      |+++++++...+..++
T Consensus        50 ~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~l  123 (333)
T 1mqb_A           50 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHN------IIRLEGVISKYKPMMI  123 (333)
T ss_dssp             EEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTT------BCCEEEEECSSSSEEE
T ss_pred             cEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCC------CCcEEEEEecCCCcEE
Confidence            57999999999999987543    46999999753  233456789999999998877      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.
T Consensus       124 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~Dikp~NIl  179 (333)
T 1mqb_A          124 ITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAG-----------------------MKYLANMNYVHRDLAARNIL  179 (333)
T ss_dssp             EEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEE
T ss_pred             EEeCCCCCcHHHHHHhCC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeCCCCChheEE
Confidence            99999 789999998753 357888888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       180 ~~------------------------------------------------------------------------------  181 (333)
T 1mqb_A          180 VN------------------------------------------------------------------------------  181 (333)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             EC------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                       ....+||+|||++......      .....+|+.|+|||.+.+..++.++|+|||||++|+++
T Consensus       182 -----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell  244 (333)
T 1mqb_A          182 -----------------SNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVM  244 (333)
T ss_dssp             -----------------TTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHH
Confidence                             2356899999998753221      12234577899999998888999999999999999999


Q ss_pred             c-ccccccccCCCcee
Q psy2006         309 L-GITLMARKTKTKYF  323 (351)
Q Consensus       309 t-G~~pf~~~~~~~~~  323 (351)
                      + |..||.+.+..+.+
T Consensus       245 t~g~~pf~~~~~~~~~  260 (333)
T 1mqb_A          245 TYGERPYWELSNHEVM  260 (333)
T ss_dssp             TTSCCTTTTCCHHHHH
T ss_pred             cCCCCCcccCCHHHHH
Confidence            8 99999877655443

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.97  E-value=2.3e-32  Score=253.04  Aligned_cols=194  Identities=21%  Similarity=0.342  Sum_probs=163.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh-------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK-------YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~-------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|++..+++.||+|++.....       ..+.+.+|+.+++.+.|.+++    |+++++++...+..+
T Consensus        49 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~----i~~~~~~~~~~~~~~  124 (320)
T 3a99_A           49 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG----VIRLLDWFERPDSFV  124 (320)
T ss_dssp             EECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCS----BCCEEEEEECSSEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCC----ceEEEEEEecCCcEE
Confidence            579999999999999999999999999975421       224566899999999864444    999999999999999


Q ss_pred             EEEecc-C-CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          75 IAFEIL-G-LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        75 lV~E~~-g-~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +|||++ + ++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.|
T Consensus       125 lv~e~~~~~~~L~~~l~~~~--~l~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivH~Dlkp~N  179 (320)
T 3a99_A          125 LILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEA-----------------------VRHCHNCGVLHRDIKDEN  179 (320)
T ss_dssp             EEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGG
T ss_pred             EEEEcCCCCccHHHHHhccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcEeCCCCHHH
Confidence            999999 4 89999998764  57888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+..                                                                           
T Consensus       180 Ill~~---------------------------------------------------------------------------  184 (320)
T 3a99_A          180 ILIDL---------------------------------------------------------------------------  184 (320)
T ss_dssp             EEEET---------------------------------------------------------------------------
T ss_pred             EEEeC---------------------------------------------------------------------------
Confidence            98860                                                                           


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc-ccccccccceeeCceeeecCCC-CCccceeeeeeeeEeeccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-HHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG  310 (351)
                                         ....+||+|||++..... ......||+.|+|||++.+..+ +.++|+|||||++|++++|
T Consensus       185 -------------------~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g  245 (320)
T 3a99_A          185 -------------------NRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCG  245 (320)
T ss_dssp             -------------------TTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHS
T ss_pred             -------------------CCCCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHC
Confidence                               135699999999876433 3345678999999999987776 7788999999999999999


Q ss_pred             cccccccC
Q psy2006         311 ITLMARKT  318 (351)
Q Consensus       311 ~~pf~~~~  318 (351)
                      ..||...+
T Consensus       246 ~~pf~~~~  253 (320)
T 3a99_A          246 DIPFEHDE  253 (320)
T ss_dssp             SCSCCSHH
T ss_pred             CCCCCChh
Confidence            99997643

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.97  E-value=2.6e-32  Score=251.51  Aligned_cols=191  Identities=19%  Similarity=0.285  Sum_probs=157.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|.+ .+++.||+|++...   ....+.+.+|+++++.+.|.+++    |+++++++...+++++|||
T Consensus        34 ~~lg~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~----iv~~~~~~~~~~~~~lv~e  108 (313)
T 3cek_A           34 KQIGSGGSSKVFQVLN-EKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDK----IIRLYDYEITDQYIYMVME  108 (313)
T ss_dssp             EEEECCSSEEEEEEEC-TTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTT----BCCEEEEEECSSEEEEEEC
T ss_pred             EEecCCCCEEEEEEEc-CCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCc----eEEEEEEeecCCEEEEEEe
Confidence            5799999999999998 46899999999643   23446778999999999864444    9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      +.+++|.+++....  .+++..++.++.|++.|                       |.|||++|++|||+|+.||.+.  
T Consensus       109 ~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~dlkp~NIl~~--  161 (313)
T 3cek_A          109 CGNIDLNSWLKKKK--SIDPWERKSYWKNMLEA-----------------------VHTIHQHGIVHSDLKPANFLIV--  161 (313)
T ss_dssp             CCSEEHHHHHHHCS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGGEEEE--
T ss_pred             cCCCcHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCceecCCCcccEEEE--
Confidence            77999999998764  57788888888888888                       9999999999999999999886  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       162 --------------------------------------------------------------------------------  161 (313)
T 3cek_A          162 --------------------------------------------------------------------------------  161 (313)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeec-----------CCCCCccceeeeee
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILE-----------LGWAQPCDVWSIGC  302 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DiwslG~  302 (351)
                                    ...+||+|||++.....     ......||+.|+|||.+.+           ..++.++|+|||||
T Consensus       162 --------------~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~  227 (313)
T 3cek_A          162 --------------DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGC  227 (313)
T ss_dssp             --------------TTEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHH
T ss_pred             --------------CCeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHH
Confidence                          14589999999875322     1234578999999999865           46788999999999


Q ss_pred             eeEeeccccccccccC
Q psy2006         303 IIFELYLGITLMARKT  318 (351)
Q Consensus       303 ~l~~l~tG~~pf~~~~  318 (351)
                      ++|+|++|..||....
T Consensus       228 il~el~~g~~pf~~~~  243 (313)
T 3cek_A          228 ILYYMTYGKTPFQQII  243 (313)
T ss_dssp             HHHHHHHSSCTTTTCC
T ss_pred             HHHHHHhCCCchhhHH
Confidence            9999999999997654

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.97  E-value=7.6e-33  Score=250.71  Aligned_cols=195  Identities=20%  Similarity=0.239  Sum_probs=155.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC-CeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH-GHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~-~~~~lV~E~~   80 (351)
                      +.||+|+||+||+|.+  +++.||+|++... ...+.+.+|+++++.++|+|      |+++++++... ++.++||||+
T Consensus        27 ~~lg~G~~g~V~~~~~--~~~~vavK~~~~~-~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~lv~e~~   97 (278)
T 1byg_A           27 QTIGKGEFGDVMLGDY--RGNKVAVKCIKND-ATAQAFLAEASVMTQLRHSN------LVQLLGVIVEEKGGLYIVTEYM   97 (278)
T ss_dssp             EEEEECSSCEEEEEEE--TTEEEEEEECCCC-C--HHHHHTHHHHTTCCCTT------BCCEEEEECCC--CCEEEECCC
T ss_pred             eEEecCCCceEEEEEE--cCCEEEEEEecch-hHHHHHHHHHHHHHhCCCCC------EeeEEEEEEcCCCceEEEEecC
Confidence            5799999999999985  6899999999754 34567889999999999877      99999997554 4899999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +++|.+++.......+++..+..++.|++.+                       |.|||++|++|+|+|+.|+.+.   
T Consensus        98 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dlkp~Nil~~---  151 (278)
T 1byg_A           98 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA-----------------------MEYLEGNNFVHRDLAARNVLVS---  151 (278)
T ss_dssp             TTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEEC---
T ss_pred             CCCCHHHHHHhcccccCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccccCCCcceEEEe---
Confidence             7799999987643236677777777777777                       9999999999999999999886   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (278)
T 1byg_A          152 --------------------------------------------------------------------------------  151 (278)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccC
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKT  318 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~  318 (351)
                                  ....++|+|||++...........+++.|+|||.+.+..++.++|+|||||++|++++ |..||...+
T Consensus       152 ------------~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~  219 (278)
T 1byg_A          152 ------------EDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  219 (278)
T ss_dssp             ------------TTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC
T ss_pred             ------------CCCcEEEeeccccccccccccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCC
Confidence                        2356999999998765554555677889999999988889999999999999999998 999998876


Q ss_pred             CCcee
Q psy2006         319 KTKYF  323 (351)
Q Consensus       319 ~~~~~  323 (351)
                      ..+..
T Consensus       220 ~~~~~  224 (278)
T 1byg_A          220 LKDVV  224 (278)
T ss_dssp             GGGHH
T ss_pred             HHHHH
Confidence            65544

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.97  E-value=8.8e-32  Score=247.03  Aligned_cols=195  Identities=19%  Similarity=0.316  Sum_probs=163.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||+|+||+||+|.+  +++.||+|++...     ....+.+.+|+++++.++|+|      |+++++++...++.|+|
T Consensus        37 ~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~lv  108 (307)
T 2nru_A           37 NKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN------LVELLGFSSDGDDLCLV  108 (307)
T ss_dssp             CEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSCEEE
T ss_pred             CccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC------eEEEEEEEecCCceEEE
Confidence            5799999999999994  7899999999642     233567889999999999877      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcC-CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          77 FEIL-GLSVFDFLKENN-YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~-~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |||+ +++|.+++.... ...+++..+..++.|++.|                       |.|||++|++|+|+|+.||.
T Consensus       109 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~i~H~dlkp~Nil  165 (307)
T 2nru_A          109 YVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANG-----------------------INFLHENHHIHRDIKSANIL  165 (307)
T ss_dssp             EECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGEE
T ss_pred             EEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHH-----------------------HHHHhcCCeecCCCCHHHEE
Confidence            9999 899999997542 2357778888888888887                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       166 i~------------------------------------------------------------------------------  167 (307)
T 2nru_A          166 LD------------------------------------------------------------------------------  167 (307)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                       ....++|+|||++.....     ......||+.|+|||.+.+ .++.++|+|||||++|++++
T Consensus       168 -----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~  229 (307)
T 2nru_A          168 -----------------EAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIIT  229 (307)
T ss_dssp             -----------------TTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHH
Confidence                             235789999999865322     1234578999999998754 47889999999999999999


Q ss_pred             ccccccccCCCcee
Q psy2006         310 GITLMARKTKTKYF  323 (351)
Q Consensus       310 G~~pf~~~~~~~~~  323 (351)
                      |..||...+..+.+
T Consensus       230 g~~p~~~~~~~~~~  243 (307)
T 2nru_A          230 GLPAVDEHREPQLL  243 (307)
T ss_dssp             CCCSBCTTBSSSBT
T ss_pred             CCCCcccCcchHHH
Confidence            99999887665543

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.97  E-value=3.2e-32  Score=273.28  Aligned_cols=195  Identities=19%  Similarity=0.247  Sum_probs=161.5

Q ss_pred             cccCcccceEEEEEEee--cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           3 SLNCVASNHVCTNVVYE--VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~--~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +||+|+||+||+|.++.  ++..||||+++..  ....+.+.+|+++|+.++|+|      |+++++++.. +.+++|||
T Consensus       343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpn------iv~l~~~~~~-~~~~lv~E  415 (613)
T 2ozo_A          343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPY------IVRLIGVCQA-EALMLVME  415 (613)
T ss_dssp             EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTT------BCCEEEEEES-SSEEEEEE
T ss_pred             EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCC------EeeEEEEecc-CCeEEEEE
Confidence            69999999999998764  4567999999753  234577899999999999887      9999999976 67999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++.... ..+++..+..++.|++.|                       |+|||+++++|||+|+.||.+. 
T Consensus       416 ~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~~-----------------------L~~LH~~~iiHrDlkp~NILl~-  470 (613)
T 2ozo_A          416 MAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMG-----------------------MKYLEEKNFVHRNLAARNVLLV-  470 (613)
T ss_dssp             CCTTCBHHHHHTTCT-TTSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEEE-
T ss_pred             eCCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEcCcCCHHHEEEc-
Confidence            99 899999997653 357888888888888888                       9999999999999999999887 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       471 --------------------------------------------------------------------------------  470 (613)
T 2ozo_A          471 --------------------------------------------------------------------------------  470 (613)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-c
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-G  310 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G  310 (351)
                                    ....+||+|||++......      .....+++.|+|||++.+..++.++|||||||++|+|++ |
T Consensus       471 --------------~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G  536 (613)
T 2ozo_A          471 --------------NRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYG  536 (613)
T ss_dssp             --------------ETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred             --------------CCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCC
Confidence                          2357999999998753211      122345678999999998999999999999999999998 9


Q ss_pred             cccccccCCCcee
Q psy2006         311 ITLMARKTKTKYF  323 (351)
Q Consensus       311 ~~pf~~~~~~~~~  323 (351)
                      ..||.+.+..+++
T Consensus       537 ~~Pf~~~~~~~~~  549 (613)
T 2ozo_A          537 QKPYKKMKGPEVM  549 (613)
T ss_dssp             CCTTTTCCSHHHH
T ss_pred             CCCCCCCCHHHHH
Confidence            9999988776654

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.97  E-value=2.7e-32  Score=248.81  Aligned_cols=194  Identities=18%  Similarity=0.230  Sum_probs=160.0

Q ss_pred             cccCcccceEEEEEE--eecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           3 SLNCVASNHVCTNVV--YEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~--~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      .||+|+||+||+|.+  ..+++.||+|++....   ...+.+.+|+++++.++|+|      |+++++++ ..+..++||
T Consensus        24 ~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~-~~~~~~lv~   96 (291)
T 1xbb_A           24 ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPY------IVRMIGIC-EAESWMLVM   96 (291)
T ss_dssp             EEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTT------BCCEEEEE-ESSSEEEEE
T ss_pred             ccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCC------EEEEEEEE-CCCCcEEEE
Confidence            799999999999965  4567899999997542   23567889999999998877      99999999 667899999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++....  .+++..+..++.|++.|                       |.|||++|++|+|+|+.||.+.
T Consensus        97 e~~~~~~L~~~l~~~~--~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~i~H~dikp~Nil~~  151 (291)
T 1xbb_A           97 EMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMG-----------------------MKYLEESNFVHRDLAARNVLLV  151 (291)
T ss_dssp             ECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEEE
T ss_pred             EeCCCCCHHHHHHhCc--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeEcCCCCcceEEEe
Confidence            999 899999998764  57888888888888888                       9999999999999999999887


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       152 --------------------------------------------------------------------------------  151 (291)
T 1xbb_A          152 --------------------------------------------------------------------------------  151 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-  309 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-  309 (351)
                                     ....++|+|||++......      .....+++.|+|||.+.+..++.++|+|||||++|++++ 
T Consensus       152 ---------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~  216 (291)
T 1xbb_A          152 ---------------TQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSY  216 (291)
T ss_dssp             ---------------ETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTT
T ss_pred             ---------------CCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhc
Confidence                           2356899999998653221      123456688999999988888999999999999999999 


Q ss_pred             ccccccccCCCcee
Q psy2006         310 GITLMARKTKTKYF  323 (351)
Q Consensus       310 G~~pf~~~~~~~~~  323 (351)
                      |..||.+.+..+..
T Consensus       217 g~~p~~~~~~~~~~  230 (291)
T 1xbb_A          217 GQKPYRGMKGSEVT  230 (291)
T ss_dssp             TCCSSTTCCHHHHH
T ss_pred             CCCCCCCCCHHHHH
Confidence            99999887665543

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.97  E-value=1.7e-32  Score=248.26  Aligned_cols=197  Identities=17%  Similarity=0.261  Sum_probs=163.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee--CCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY--HGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~--~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+++.||+|++...   ....+.+.+|+.+++.++|+|      |+++++++..  .+.+++|
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~~~lv   85 (279)
T 2w5a_A           12 YTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN------IVRYYDRIIDRTNTTLYIV   85 (279)
T ss_dssp             EEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEEEGGGTEEEEE
T ss_pred             hhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCC------CCeEEEEEecCCCceEEEE
Confidence            5799999999999999889999999999753   234567889999999998877      9999998854  5699999


Q ss_pred             Eecc-CCCHHHHHHhcC--CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc-----cccccc
Q psy2006          77 FEIL-GLSVFDFLKENN--YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK-----REVRRV  148 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~--~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~-----i~h~d~  148 (351)
                      |||+ +++|.+++....  ...+++..+..++.|++.+                       |.|||+.+     ++|+|+
T Consensus        86 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~~~~~~ivH~dl  142 (279)
T 2w5a_A           86 MEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA-----------------------LKECHRRSDGGHTVLHRDL  142 (279)
T ss_dssp             EECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHHC------CCCCC
T ss_pred             EeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHH-----------------------HHHHhcccCCCCeeEEecc
Confidence            9999 789999997642  2347777888888888877                       99999999     999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      ++.||.+.                                                                        
T Consensus       143 ~p~NIl~~------------------------------------------------------------------------  150 (279)
T 2w5a_A          143 KPANVFLD------------------------------------------------------------------------  150 (279)
T ss_dssp             SGGGEEEC------------------------------------------------------------------------
T ss_pred             chhhEEEc------------------------------------------------------------------------
Confidence            99999886                                                                        


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccc---cccccccceeeCceeeecCCCCCccceeeeeeeeE
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIF  305 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~  305 (351)
                                             ....+||+|||++......   .....|++.|+|||.+.+..++.++|+|||||++|
T Consensus       151 -----------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~  207 (279)
T 2w5a_A          151 -----------------------GKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLY  207 (279)
T ss_dssp             -----------------------SSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHH
T ss_pred             -----------------------CCCCEEEecCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHH
Confidence                                   2356899999988653322   23457899999999998888999999999999999


Q ss_pred             eeccccccccccCCCce
Q psy2006         306 ELYLGITLMARKTKTKY  322 (351)
Q Consensus       306 ~l~tG~~pf~~~~~~~~  322 (351)
                      ++++|..||...+..++
T Consensus       208 ~l~~g~~p~~~~~~~~~  224 (279)
T 2w5a_A          208 ELCALMPPFTAFSQKEL  224 (279)
T ss_dssp             HHHHSSCSSCCSSHHHH
T ss_pred             HHHHCCCCCcccCHHHH
Confidence            99999999988765443

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.97  E-value=8.6e-33  Score=252.84  Aligned_cols=198  Identities=22%  Similarity=0.280  Sum_probs=146.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||+|+||+||+|.+..+++.||+|++....  ...+.+.+|+.+++.+.|+|      |+++++++...++.++||||
T Consensus        21 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~~~~lv~e~   94 (303)
T 2vwi_A           21 EVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPN------IVSYYTSFVVKDELWLVMKL   94 (303)
T ss_dssp             EECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTT------BCCEEEEEESSSCEEEEEEC
T ss_pred             heeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCC------EeeEEEEEeecCCcEEEehh
Confidence            57999999999999998899999999997532  33456778999999998877      99999999999999999999


Q ss_pred             c-CCCHHHHHHhc------CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          80 L-GLSVFDFLKEN------NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        80 ~-g~sL~~~l~~~------~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      + +++|.+++...      ....+++..+..++.|++.|                       |.|||++|++|+|+++.|
T Consensus        95 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~i~H~dl~p~N  151 (303)
T 2vwi_A           95 LSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEG-----------------------LEYLHKNGQIHRDVKAGN  151 (303)
T ss_dssp             CTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCSGGG
T ss_pred             ccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCCCCCCCChhh
Confidence            9 89999999752      22346777777777777777                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       152 il~~----------------------------------------------------------------------------  155 (303)
T 2vwi_A          152 ILLG----------------------------------------------------------------------------  155 (303)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc--------ccccccccceeeCceeeec-CCCCCccceeeeeee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--------HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCI  303 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--------~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~  303 (351)
                                         ..+.++|+|||++.....        ......||+.|+|||++.+ ..++.++|+|||||+
T Consensus       156 -------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~i  216 (303)
T 2vwi_A          156 -------------------EDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGIT  216 (303)
T ss_dssp             -------------------TTCCEEECCCHHHHHCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHH
T ss_pred             -------------------CCCCEEEEeccchheeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHH
Confidence                               235689999998754211        1234578999999999876 568999999999999


Q ss_pred             eEeeccccccccccCCCcee
Q psy2006         304 IFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       304 l~~l~tG~~pf~~~~~~~~~  323 (351)
                      +|++++|..||...+..+.+
T Consensus       217 l~~l~~g~~pf~~~~~~~~~  236 (303)
T 2vwi_A          217 AIELATGAAPYHKYPPMKVL  236 (303)
T ss_dssp             HHHHHHSSCTTTTSCGGGHH
T ss_pred             HHHHHhCCCCCccCchhhHH
Confidence            99999999999887665543

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.97  E-value=6.7e-32  Score=248.94  Aligned_cols=192  Identities=17%  Similarity=0.178  Sum_probs=157.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee----CCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY----HGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~----~~~~~lV   76 (351)
                      ++||+|+||.||+|.+..+++.||+|++... ....+.+.+|+.+++.+.|+|      |+++++++..    ....++|
T Consensus        35 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~~~lv  108 (317)
T 2buj_A           35 QKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPN------ILRLVAYCLRERGAKHEAWLL  108 (317)
T ss_dssp             EEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTT------BCCCCEEEEEEETTEEEEEEE
T ss_pred             EEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCC------eeeEEEEEEeccCCCceeEEE
Confidence            6799999999999999999999999998643 344567889999999998887      9999999973    3489999


Q ss_pred             Eecc-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          77 FEIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |||+ +++|.+++...  ....+++..+..++.|++.|                       |.|||+++++|||+|+.||
T Consensus       109 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~-----------------------L~~LH~~~ivH~dlkp~NI  165 (317)
T 2buj_A          109 LPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRG-----------------------LEAIHAKGYAHRDLKPTNI  165 (317)
T ss_dssp             EECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGE
T ss_pred             EEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCHHHE
Confidence            9999 88999999874  22457788888888888887                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       166 l~~-----------------------------------------------------------------------------  168 (317)
T 2buj_A          166 LLG-----------------------------------------------------------------------------  168 (317)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            886                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc------------ccccccccceeeCceeeecCC---CCCcccee
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------------HHSTIVSTRHYRAPEVILELG---WAQPCDVW  298 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------------~~~~~~gt~~y~aPE~~~~~~---~~~~~Diw  298 (351)
                                        ....++|+|||++.....            ......||+.|+|||++.+..   ++.++|+|
T Consensus       169 ------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~  230 (317)
T 2buj_A          169 ------------------DEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVW  230 (317)
T ss_dssp             ------------------TTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHH
T ss_pred             ------------------CCCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHH
Confidence                              235689999998764221            112345789999999987554   68899999


Q ss_pred             eeeeeeEeecccccccccc
Q psy2006         299 SIGCIIFELYLGITLMARK  317 (351)
Q Consensus       299 slG~~l~~l~tG~~pf~~~  317 (351)
                      ||||++|++++|..||...
T Consensus       231 slG~il~el~~g~~p~~~~  249 (317)
T 2buj_A          231 SLGCVLYAMMFGEGPYDMV  249 (317)
T ss_dssp             HHHHHHHHHHHSSCTTHHH
T ss_pred             HHHHHHHHHHhCCCChhhh
Confidence            9999999999999999763

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.97  E-value=3.1e-32  Score=250.78  Aligned_cols=198  Identities=20%  Similarity=0.261  Sum_probs=160.2

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecchh--hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC-e
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNVE--KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG-H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~-~   72 (351)
                      ++||+|+||+||+|.+.     .+++.||+|++....  ...+.+.+|+++++.+ .|+|      |+++++++...+ .
T Consensus        33 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~------iv~~~~~~~~~~~~  106 (316)
T 2xir_A           33 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN------VVNLLGACTKPGGP  106 (316)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECCTTSC
T ss_pred             eEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCC------eeeEEEEEecCCCc
Confidence            57999999999999864     467899999997542  3345678999999999 4566      999999998765 6


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCC--------------CCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhc
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYL--------------PYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY  137 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~--------------~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  137 (351)
                      +++||||+ +++|.+++......              .+++..+..++.|++.|                       |.|
T Consensus       107 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------l~~  163 (316)
T 2xir_A          107 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKG-----------------------MEF  163 (316)
T ss_dssp             CEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHH-----------------------HHH
T ss_pred             eEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHH-----------------------HHH
Confidence            99999999 78999999876421              15566666666666666                       999


Q ss_pred             cccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         138 NNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       138 lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      ||++|++|||+|+.||.+.                                                             
T Consensus       164 lH~~~i~H~dikp~Nil~~-------------------------------------------------------------  182 (316)
T 2xir_A          164 LASRKCIHRDLAARNILLS-------------------------------------------------------------  182 (316)
T ss_dssp             HHHTTCCCSCCSGGGEEEC-------------------------------------------------------------
T ss_pred             HHhCCcccccCccceEEEC-------------------------------------------------------------
Confidence            9999999999999999886                                                             


Q ss_pred             CCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCC
Q psy2006         218 HPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWA  292 (351)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~  292 (351)
                                                        ....+||+|||++.....     ......||+.|+|||++.+..++
T Consensus       183 ----------------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  228 (316)
T 2xir_A          183 ----------------------------------EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYT  228 (316)
T ss_dssp             ----------------------------------GGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCC
T ss_pred             ----------------------------------CCCCEEECCCccccccccCccceeccCCCcceeecCchhhcccccc
Confidence                                              235699999999865321     12345678899999999999999


Q ss_pred             CccceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         293 QPCDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       293 ~~~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      .++|+|||||++|+++| |..||.+.+..+.+
T Consensus       229 ~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~  260 (316)
T 2xir_A          229 IQSDVWSFGVLLWEIFSLGASPYPGVKIDEEF  260 (316)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHH
T ss_pred             chhHHHHHHHHHHHHHhCCCCCCcccchhHHH
Confidence            99999999999999998 99999887655433

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=9.9e-32  Score=245.37  Aligned_cols=196  Identities=13%  Similarity=0.156  Sum_probs=159.5

Q ss_pred             ccccCcccceEEEEEEeecCc---EEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE-EE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS---VVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM-CI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~---~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~-~l   75 (351)
                      ++||+|+||+||+|.+..+++   .||+|++...  ....+.+.+|+.+++.++|+|      |+++++++...+.. ++
T Consensus        27 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~  100 (298)
T 3pls_A           27 RVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPN------VLALIGIMLPPEGLPHV  100 (298)
T ss_dssp             EEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTT------BCCCCEEECCSSSCCEE
T ss_pred             ceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCC------eeeEEEEEecCCCCcEE
Confidence            579999999999999766554   8999999753  234467789999999999877      99999999877654 99


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.|+.
T Consensus       101 v~e~~~~~~L~~~~~~~~-~~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~i~H~dikp~Nil  156 (298)
T 3pls_A          101 LLPYMCHGDLLQFIRSPQ-RNPTVKDLISFGLQVARG-----------------------MEYLAEQKFVHRDLAARNCM  156 (298)
T ss_dssp             EECCCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEE
T ss_pred             EEecccCCCHHHHHhccc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCcceEE
Confidence            99999 999999997743 457788888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       157 i~------------------------------------------------------------------------------  158 (298)
T 3pls_A          157 LD------------------------------------------------------------------------------  158 (298)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             Ec------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceec-------cccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-------EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                       ..+.+||+|||++....       .......+++.|+|||.+.+..++.++|+||+||++|++
T Consensus       159 -----------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  221 (298)
T 3pls_A          159 -----------------ESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWEL  221 (298)
T ss_dssp             -----------------TTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHH
Confidence                             23568999999986421       122345678899999999988999999999999999999


Q ss_pred             ccc-cccccccCCCce
Q psy2006         308 YLG-ITLMARKTKTKY  322 (351)
Q Consensus       308 ~tG-~~pf~~~~~~~~  322 (351)
                      ++| .+||...+..+.
T Consensus       222 ~~g~~~~~~~~~~~~~  237 (298)
T 3pls_A          222 LTRGAPPYRHIDPFDL  237 (298)
T ss_dssp             HHTSCCTTTTSCGGGH
T ss_pred             hhCCCCCCccCCHHHH
Confidence            995 555555444433

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.97  E-value=1.5e-31  Score=247.91  Aligned_cols=194  Identities=21%  Similarity=0.251  Sum_probs=142.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHH-HHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEIN-ALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~-~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++.||+|+||+||+|.+..+++.||+|++...  .........|+. +++.+.|+|      |+++++++..++..++||
T Consensus        27 ~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~n------iv~~~~~~~~~~~~~lv~  100 (327)
T 3aln_A           27 LGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPY------IVQFYGALFREGDCWICM  100 (327)
T ss_dssp             -CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             hheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCc------EeeeeeEEEeCCceEEEE
Confidence            36799999999999999889999999999753  223344556665 666677776      999999999999999999


Q ss_pred             eccCCCHHHHHHhc---CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCe
Q psy2006          78 EILGLSVFDFLKEN---NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDI  153 (351)
Q Consensus        78 E~~g~sL~~~l~~~---~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni  153 (351)
                      ||+.++|.+++...   ....+++..+..++.|++.|                       |.|||+. |++|||+|+.||
T Consensus       101 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~~ivH~dlkp~NI  157 (327)
T 3aln_A          101 ELMSTSFDKFYKYVYSVLDDVIPEEILGKITLATVKA-----------------------LNHLKENLKIIHRDIKPSNI  157 (327)
T ss_dssp             CCCSEEHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHHHSCCCSCCCGGGE
T ss_pred             eecCCChHHHHHHHHhhhcccCcHHHHHHHHHHHHHH-----------------------HHHHhccCCEeECCCCHHHE
Confidence            99988998888742   22457777888888888777                       9999998 999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       158 ll~-----------------------------------------------------------------------------  160 (327)
T 3aln_A          158 LLD-----------------------------------------------------------------------------  160 (327)
T ss_dssp             EEE-----------------------------------------------------------------------------
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            886                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceee----ecCCCCCccceeeeeeeeEee
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVI----LELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~----~~~~~~~~~DiwslG~~l~~l  307 (351)
                                        ..+.+||+|||++.....  ......||+.|+|||++    .+..++.++|+|||||++|+|
T Consensus       161 ------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l  222 (327)
T 3aln_A          161 ------------------RSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYEL  222 (327)
T ss_dssp             ------------------TTTEEEECCCSSSCC------------------------------CCSHHHHHHHHHHHHHH
T ss_pred             ------------------CCCCEEEccCCCceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHH
Confidence                              235699999999875332  22345789999999998    456688999999999999999


Q ss_pred             ccccccccccC
Q psy2006         308 YLGITLMARKT  318 (351)
Q Consensus       308 ~tG~~pf~~~~  318 (351)
                      ++|..||.+.+
T Consensus       223 ~~g~~pf~~~~  233 (327)
T 3aln_A          223 ATGRFPYPKWN  233 (327)
T ss_dssp             HHSCCCSSCC-
T ss_pred             HHCCCCCCCcc
Confidence            99999998754

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.97  E-value=1.3e-31  Score=242.94  Aligned_cols=196  Identities=17%  Similarity=0.161  Sum_probs=160.9

Q ss_pred             ccccCcccceEEEEEEeec---CcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEV---DSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~---~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|++...   +..||+|++...  ....+.+.+|+.+++.++|+|      |+++++++.. +..++|
T Consensus        18 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~-~~~~~v   90 (281)
T 3cc6_A           18 RILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPH------IVKLIGIIEE-EPTWII   90 (281)
T ss_dssp             EEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTT------BCCEEEEECS-SSCEEE
T ss_pred             EEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCC------cceEEEEEcC-CCCEEE
Confidence            5799999999999997643   456999999753  234567889999999998877      9999999875 467899


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|+|+|+.|+.+
T Consensus        91 ~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dlkp~Nil~  146 (281)
T 3cc6_A           91 MELYPYGELGHYLERNK-NSLKVLTLVLYSLQICKA-----------------------MAYLESINCVHRDIAVRNILV  146 (281)
T ss_dssp             EECCTTCBHHHHHHHHT-TTCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCSGGGEEE
T ss_pred             EecCCCCCHHHHHHhcc-ccCCHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCCCccceEEE
Confidence            9999 899999998764 357788888888888887                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+                                                                              
T Consensus       147 ~~------------------------------------------------------------------------------  148 (281)
T 3cc6_A          147 AS------------------------------------------------------------------------------  148 (281)
T ss_dssp             EE------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            72                                                                              


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-c
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-G  310 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G  310 (351)
                                       ...++|+|||++.....    ......+++.|+|||.+.+..++.++|+|||||++|++++ |
T Consensus       149 -----------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g  211 (281)
T 3cc6_A          149 -----------------PECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFG  211 (281)
T ss_dssp             -----------------TTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTT
T ss_pred             -----------------CCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCC
Confidence                             34689999999875322    1233556788999999988899999999999999999998 9


Q ss_pred             cccccccCCCcee
Q psy2006         311 ITLMARKTKTKYF  323 (351)
Q Consensus       311 ~~pf~~~~~~~~~  323 (351)
                      ..||...+..+..
T Consensus       212 ~~p~~~~~~~~~~  224 (281)
T 3cc6_A          212 KQPFFWLENKDVI  224 (281)
T ss_dssp             CCTTTTSCGGGHH
T ss_pred             CCCcccCChHHHH
Confidence            9999876655543

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.97  E-value=4.9e-32  Score=250.56  Aligned_cols=190  Identities=20%  Similarity=0.210  Sum_probs=158.8

Q ss_pred             ccccCcccceEEEEE----EeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC--CeE
Q psy2006           2 CSLNCVASNHVCTNV----VYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH--GHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~----~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~--~~~   73 (351)
                      ++||+|+||+||+|.    +..+++.||+|++....  ...+.+.+|+++|+.++|+|      |+++++++...  .++
T Consensus        37 ~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~  110 (318)
T 3lxp_A           37 RDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEH------IIKYKGCCEDAGAASL  110 (318)
T ss_dssp             EEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEEETTTTEE
T ss_pred             heecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcc------hhhEEEEEecCCCceE
Confidence            679999999997765    44588999999997642  34567889999999999877      99999999985  589


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++||||+ +++|.+++....   +++..+..++.|++.+                       |.|||++|++|+|+|+.|
T Consensus       111 ~lv~e~~~~~~L~~~l~~~~---~~~~~~~~i~~~l~~~-----------------------l~~LH~~~ivH~Dikp~N  164 (318)
T 3lxp_A          111 QLVMEYVPLGSLRDYLPRHS---IGLAQLLLFAQQICEG-----------------------MAYLHAQHYIHRDLAARN  164 (318)
T ss_dssp             EEEECCCTTCBHHHHGGGSC---CCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGG
T ss_pred             EEEEecccCCcHHHHHhhCC---CCHHHHHHHHHHHHHH-----------------------HHHHHhCCccCCCCchhe
Confidence            9999999 889999997754   7888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       165 il~~----------------------------------------------------------------------------  168 (318)
T 3lxp_A          165 VLLD----------------------------------------------------------------------------  168 (318)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             EEEc----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                         ....++|+|||++.....      ......+|+.|+|||.+.+..++.++|+|||||++++
T Consensus       169 -------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~  229 (318)
T 3lxp_A          169 -------------------NDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYE  229 (318)
T ss_dssp             -------------------TTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHH
T ss_pred             -------------------CCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHH
Confidence                               235689999999876332      1234567888999999988888999999999999999


Q ss_pred             eccccccccccC
Q psy2006         307 LYLGITLMARKT  318 (351)
Q Consensus       307 l~tG~~pf~~~~  318 (351)
                      ++||..||....
T Consensus       230 ll~g~~p~~~~~  241 (318)
T 3lxp_A          230 LLTHCDSSQSPP  241 (318)
T ss_dssp             HHTTTCGGGSHH
T ss_pred             HHhCCCcccccc
Confidence            999999997653

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.97  E-value=8.8e-32  Score=246.01  Aligned_cols=197  Identities=14%  Similarity=0.163  Sum_probs=158.6

Q ss_pred             ccccCcccceEEEEEEeec---CcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeE-eeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEV---DSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF-DYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~---~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f-~~~~~~~l   75 (351)
                      ++||+|+||+||+|.+..+   +..||+|++...  ....+.+.+|+.++++++|+|      |+++++++ ..++..|+
T Consensus        31 ~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~  104 (298)
T 3f66_A           31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN------VLSLLGICLRSEGSPLV  104 (298)
T ss_dssp             EEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTT------BCCCCEEECCSSSCCEE
T ss_pred             ceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCC------EeeeeeEEEcCCCceEE
Confidence            5799999999999997543   346999999753  234467789999999999877      99999985 45568999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.|+.
T Consensus       105 v~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~ql~~~-----------------------l~~lH~~~i~H~dikp~Nil  160 (298)
T 3f66_A          105 VLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKG-----------------------MKYLASKKFVHRDLAARNCM  160 (298)
T ss_dssp             EEECCTTCBHHHHHHCTT-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEE
T ss_pred             EEeCCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccCCCCchheEE
Confidence            99999 789999997654 356778888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       161 ~~------------------------------------------------------------------------------  162 (298)
T 3f66_A          161 LD------------------------------------------------------------------------------  162 (298)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             EC------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                       ....+||+|||++.....       ......+|+.|+|||.+.+..++.++|+||+||+++++
T Consensus       163 -----------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  225 (298)
T 3f66_A          163 -----------------EKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL  225 (298)
T ss_dssp             -----------------TTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHH
Confidence                             235689999999865321       12335667889999999989999999999999999999


Q ss_pred             cc-ccccccccCCCcee
Q psy2006         308 YL-GITLMARKTKTKYF  323 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~~  323 (351)
                      ++ |.+||.+.+..+..
T Consensus       226 ~~~~~~~~~~~~~~~~~  242 (298)
T 3f66_A          226 MTRGAPPYPDVNTFDIT  242 (298)
T ss_dssp             HTTSCCSSTTSCTTTHH
T ss_pred             HhCCCCCCccCCHHHHH
Confidence            99 77777776655543

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.97  E-value=3.3e-32  Score=253.02  Aligned_cols=189  Identities=13%  Similarity=0.128  Sum_probs=146.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee-----CCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY-----HGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~-----~~~~~lV   76 (351)
                      ++||+|+||+||+|+  .+++.||+|++............|+..+..+.|+|      |+++++.+..     ..++|+|
T Consensus        19 ~~lg~G~~g~Vy~~~--~~~~~vavK~~~~~~~~~~~~e~~~~~~~~~~h~~------i~~~~~~~~~~~~~~~~~~~lv   90 (336)
T 3g2f_A           19 ELIGRGRYGAVYKGS--LDERPVAVKVFSFANRQNFINEKNIYRVPLMEHDN------IARFIVGDERVTADGRMEYLLV   90 (336)
T ss_dssp             EEEEECSSEEEEEEE--ETTEEEEEEEEEGGGHHHHHHHHHHHTSTTCCCTT------BCCEEEEEEEECTTSCEEEEEE
T ss_pred             eecccCCCeEEEEEE--ECCeEEEEEEeeccchhhHHHHHHHHHHHhccCcc------hhhheecccccccCCCceEEEE
Confidence            579999999999997  58999999999764332222233444444577666      9999985543     2278999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc---------ccccc
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK---------KREVR  146 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~---------~i~h~  146 (351)
                      |||+ +++|.+++....   .++..+..++.|++.|                       |.|||+.         |++||
T Consensus        91 ~e~~~~g~L~~~l~~~~---~~~~~~~~i~~qi~~~-----------------------L~~LH~~~~~~~~~~~~ivH~  144 (336)
T 3g2f_A           91 MEYYPNGSLXKYLSLHT---SDWVSSCRLAHSVTRG-----------------------LAYLHTELPRGDHYKPAISHR  144 (336)
T ss_dssp             ECCCTTCBHHHHHHHCC---BCHHHHHHHHHHHHHH-----------------------HHHHHCCBCCGGGCBCCEECS
T ss_pred             EecCCCCcHHHHHhhcc---cchhHHHHHHHHHHHH-----------------------HHHHHhhhccccccccceeec
Confidence            9999 889999998764   4777777777777777                       9999999         99999


Q ss_pred             ccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         147 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      |+|+.||.+.                                                                      
T Consensus       145 Dikp~Nill~----------------------------------------------------------------------  154 (336)
T 3g2f_A          145 DLNSRNVLVK----------------------------------------------------------------------  154 (336)
T ss_dssp             SCSGGGEEEC----------------------------------------------------------------------
T ss_pred             ccccceEEEc----------------------------------------------------------------------
Confidence            9999999886                                                                      


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----------ccccccccceeeCceeeec-------
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----------HHSTIVSTRHYRAPEVILE-------  288 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----------~~~~~~gt~~y~aPE~~~~-------  288 (351)
                                               ..+.+||+|||++.....           ......||+.|+|||++.+       
T Consensus       155 -------------------------~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  209 (336)
T 3g2f_A          155 -------------------------NDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDX  209 (336)
T ss_dssp             -------------------------TTSCEEECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGH
T ss_pred             -------------------------CCCcEEEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccc
Confidence                                     235689999999865321           1234579999999999976       


Q ss_pred             CCCCCccceeeeeeeeEeeccccccccccCC
Q psy2006         289 LGWAQPCDVWSIGCIIFELYLGITLMARKTK  319 (351)
Q Consensus       289 ~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~  319 (351)
                      ..++.++|||||||++|+|++|..||.....
T Consensus       210 ~~~~~~~DiwslG~il~ell~g~~p~~~~~~  240 (336)
T 3g2f_A          210 ESALKQVDMYALGLIYWEIFMRCTDLFPGES  240 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTBGGGSTTSC
T ss_pred             cccccccchHHHHHHHHHHHhcCCcCCCccc
Confidence            3556789999999999999999777655443

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.97  E-value=4.8e-32  Score=247.08  Aligned_cols=193  Identities=18%  Similarity=0.264  Sum_probs=150.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|++.   ..||+|+++..   ....+.+.+|+++++.++|+|      |++++++. ..++.++|||
T Consensus        30 ~~lG~G~~g~Vy~~~~~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~-~~~~~~lv~e   99 (289)
T 3og7_A           30 QRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN------ILLFMGYS-TAPQLAIVTQ   99 (289)
T ss_dssp             EEEEECSSEEEEEEESS---SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTT------BCCEEEEE-CSSSCEEEEE
T ss_pred             eEecCCCCeEEEEEEEc---CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCc------EEEEEeec-cCCccEEEEE
Confidence            57999999999999853   35999999753   234466889999999999887      99999854 5668999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |+ +++|.+++.... ..+++..+..++.|++.+                       |.|||++|++|||+|+.|+.+. 
T Consensus       100 ~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~-----------------------L~~lH~~~i~H~Dlkp~Nil~~-  154 (289)
T 3og7_A          100 WCEGSSLYHHLHASE-TKFEMKKLIDIARQTARG-----------------------MDYLHAKSIIHRDLKSNNIFLH-  154 (289)
T ss_dssp             CCCEEEHHHHHTTC----CCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEEE-
T ss_pred             ecCCCcHHHHHhhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccccCccceEEEC-
Confidence            99 899999997654 357788888888888888                       9999999999999999999887 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       155 --------------------------------------------------------------------------------  154 (289)
T 3og7_A          155 --------------------------------------------------------------------------------  154 (289)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeee---cCCCCCccceeeeeeeeEeecc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVIL---ELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                    ....++|+|||++....     .......||+.|+|||.+.   +.+++.++|+||+||+++++++
T Consensus       155 --------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~  220 (289)
T 3og7_A          155 --------------EDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMT  220 (289)
T ss_dssp             --------------TTTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHH
T ss_pred             --------------CCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHH
Confidence                          23569999999986432     2223467899999999986   5667889999999999999999


Q ss_pred             ccccccccCCCcee
Q psy2006         310 GITLMARKTKTKYF  323 (351)
Q Consensus       310 G~~pf~~~~~~~~~  323 (351)
                      |..||.+.+..+.+
T Consensus       221 g~~p~~~~~~~~~~  234 (289)
T 3og7_A          221 GQLPYSNINNRDQI  234 (289)
T ss_dssp             SSCTTSSCCCHHHH
T ss_pred             CCCCccccchHHHH
Confidence            99999886655443

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.97  E-value=1.6e-32  Score=255.56  Aligned_cols=210  Identities=14%  Similarity=0.093  Sum_probs=154.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---------hhhHHHHHHHHHHHHhC---------CCCCC-------
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---------KYREAARLEINALQKIG---------EKDPN-------   55 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---------~~~~~~~~E~~~l~~l~---------h~~~~-------   55 (351)
                      +++||+|+||+||+|++  +++.||||++....         ...+.+.+|+.+|+.++         |+|--       
T Consensus        25 ~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~l~~~~~  102 (336)
T 2vuw_A           25 CEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIGLNSVHC  102 (336)
T ss_dssp             CEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCCEEEEEE
T ss_pred             eeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhhhcceeE
Confidence            36899999999999996  78999999997532         12267889999999886         22200       


Q ss_pred             ----CCcceeeeeeeEee-------------CCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCC
Q psy2006          56 ----GRHLCVKMLDWFDY-------------HGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYL  117 (351)
Q Consensus        56 ----g~~~Iv~l~~~f~~-------------~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~  117 (351)
                          .|.||++++++|..             .+++||||||| +|++.+.+.+   ..+++..++.++.|++.|      
T Consensus       103 ~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~---~~~~~~~~~~i~~qi~~a------  173 (336)
T 2vuw_A          103 VQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRT---KLSSLATAKSILHQLTAS------  173 (336)
T ss_dssp             EESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTT---TCCCHHHHHHHHHHHHHH------
T ss_pred             ecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHh---cCCCHHHHHHHHHHHHHH------
Confidence                03346666666665             67999999999 8877766644   257888888888888888      


Q ss_pred             CCchHHHHHHhHhHHhhhhccc-cccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHH
Q psy2006         118 PYSLDQVRHMSYQLIYAVDYNN-KKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFD  196 (351)
Q Consensus       118 ~~~~~~~~~~~~~~~~~l~~lH-~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~  196 (351)
                                       |+||| ++|++|||+||+||.+.+-|.....    ....+..                     
T Consensus       174 -----------------L~~lH~~~~ivHrDlKp~NILl~~~~~~~~~----~~~~~~~---------------------  211 (336)
T 2vuw_A          174 -----------------LAVAEASLRFEHRDLHWGNVLLKKTSLKKLH----YTLNGKS---------------------  211 (336)
T ss_dssp             -----------------HHHHHHHHCCBCSCCCGGGEEEEECSCSEEE----EEETTEE---------------------
T ss_pred             -----------------HHHHHHhCCEeECCCCHHHEEEeccCCccee----eeccCcc---------------------
Confidence                             99999 9999999999999999853321000    0000000                     


Q ss_pred             HHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccc
Q psy2006         197 LISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVS  276 (351)
Q Consensus       197 ~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~g  276 (351)
                                                                        .........+||+|||+++....  ...+|
T Consensus       212 --------------------------------------------------~~~~~~~~~vkL~DFG~a~~~~~--~~~~g  239 (336)
T 2vuw_A          212 --------------------------------------------------STIPSCGLQVSIIDYTLSRLERD--GIVVF  239 (336)
T ss_dssp             --------------------------------------------------EEEECTTEEEEECCCTTCBEEET--TEEEC
T ss_pred             --------------------------------------------------ccccCCCceEEEeeccccEecCC--CcEEE
Confidence                                                              00001234799999999986543  34589


Q ss_pred             cceeeCceeeecCCCCCccceeeeeee-eEeeccccccccc
Q psy2006         277 TRHYRAPEVILELGWAQPCDVWSIGCI-IFELYLGITLMAR  316 (351)
Q Consensus       277 t~~y~aPE~~~~~~~~~~~DiwslG~~-l~~l~tG~~pf~~  316 (351)
                      |+.|+|||++.+.. +.++||||++++ .+++++|..||..
T Consensus       240 t~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~  279 (336)
T 2vuw_A          240 CDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSN  279 (336)
T ss_dssp             CCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHH
T ss_pred             eecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcc
Confidence            99999999998776 889999998776 7888899999965

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=7.4e-32  Score=255.09  Aligned_cols=197  Identities=14%  Similarity=0.159  Sum_probs=154.3

Q ss_pred             ccccCcccceEEEEEEeecC---cEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEe-eCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVD---SVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD-YHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~---~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~-~~~~~~l   75 (351)
                      +.||+|+||+||+|.+..++   ..||+|++...  ....+.+.+|+.+|+.++|+|      |+++++++. .++..++
T Consensus        95 ~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpn------Iv~~~~~~~~~~~~~~l  168 (373)
T 3c1x_A           95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN------VLSLLGICLRSEGSPLV  168 (373)
T ss_dssp             EEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTT------BCCCCEEECCCSSCCEE
T ss_pred             cEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCC------cceEEEEEEcCCCCeEE
Confidence            57999999999999986543   47899999653  234567889999999998877      999999865 4568999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||+ +++|.++++... ..+++..+..++.|++.|                       |.|||++|++|||+|+.|+.
T Consensus       169 v~e~~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivHrDlkp~NIl  224 (373)
T 3c1x_A          169 VLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKG-----------------------MKFLASKKFVHRDLAARNCM  224 (373)
T ss_dssp             EEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEE
T ss_pred             EEECCCCCCHHHHHhhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEecCccchheEE
Confidence            99999 889999997654 356777777777777777                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       225 l~------------------------------------------------------------------------------  226 (373)
T 3c1x_A          225 LD------------------------------------------------------------------------------  226 (373)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             EC------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                       ....+||+|||++.....       ......+|+.|+|||.+.+..++.++|+|||||++|++
T Consensus       227 -----------------~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~el  289 (373)
T 3c1x_A          227 -----------------EKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL  289 (373)
T ss_dssp             -----------------TTCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHH
Confidence                             235689999999864221       11234567889999999999999999999999999999


Q ss_pred             cc-ccccccccCCCcee
Q psy2006         308 YL-GITLMARKTKTKYF  323 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~~  323 (351)
                      +| |.+||...+..+..
T Consensus       290 lt~~~~p~~~~~~~~~~  306 (373)
T 3c1x_A          290 MTRGAPPYPDVNTFDIT  306 (373)
T ss_dssp             HTTSCCSCTTSCSSCHH
T ss_pred             HhCcCCCCCCCCHHHHH
Confidence            99 78888877666543

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.97  E-value=1.2e-31  Score=244.84  Aligned_cols=183  Identities=20%  Similarity=0.249  Sum_probs=148.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee------------
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY------------   69 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~------------   69 (351)
                      +.||+|+||+||+|++..+++.||+|++.......+.+.+|+.+++.++|+|      |++++++|..            
T Consensus        12 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~E~~~l~~l~h~~------i~~~~~~~~~~~~~~~~~~~~~   85 (303)
T 1zy4_A           12 AVLGQGAFGQVVKARNALDSRYYAIKKIRHTEEKLSTILSEVMLLASLNHQY------VVRYYAAWLERRNFVKPMTAVK   85 (303)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEEEHHHHHHHHHHHHHHTTCCCTT------BCCEEEEEEECCCCCC------
T ss_pred             heeccCCcEEEEEEEEcCCCeEEEEEEEeccHHHHHHHHHHHHHHHhcCchH------HHHHHHHHHhhcchhhhhcccc
Confidence            6799999999999999889999999999866555677889999999998877      9999998865            


Q ss_pred             -CCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccc
Q psy2006          70 -HGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRR  147 (351)
Q Consensus        70 -~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d  147 (351)
                       .+..|+||||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|+|
T Consensus        86 ~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~~-----------------------l~~LH~~~i~H~d  141 (303)
T 1zy4_A           86 KKSTLFIQMEYCENGTLYDLIHSEN-LNQQRDEYWRLFRQILEA-----------------------LSYIHSQGIIHRD  141 (303)
T ss_dssp             CEEEEEEEEECCCSCBHHHHHHHSC-GGGCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSC
T ss_pred             cCCceEEEEecCCCCCHHHhhhccc-cccchHHHHHHHHHHHHH-----------------------HHHHHhCCeeccc
Confidence             34899999999 889999998754 356677777777777777                       9999999999999


Q ss_pred             cCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         148 VRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       148 ~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +|+.|+.+.                                                                       
T Consensus       142 lkp~Nil~~-----------------------------------------------------------------------  150 (303)
T 1zy4_A          142 LKPMNIFID-----------------------------------------------------------------------  150 (303)
T ss_dssp             CCGGGEEEC-----------------------------------------------------------------------
T ss_pred             CCHHhEEEc-----------------------------------------------------------------------
Confidence            999998775                                                                       


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceec-----------------cccccccccceeeCceeeecC-
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----------------EHHSTIVSTRHYRAPEVILEL-  289 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----------------~~~~~~~gt~~y~aPE~~~~~-  289 (351)
                                              ....++|+|||++....                 .......||+.|+|||.+.+. 
T Consensus       151 ------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  206 (303)
T 1zy4_A          151 ------------------------ESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTG  206 (303)
T ss_dssp             ------------------------TTSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCS
T ss_pred             ------------------------CCCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCC
Confidence                                    13457888888775421                 122345788999999999765 


Q ss_pred             CCCCccceeeeeeeeEeecc
Q psy2006         290 GWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       290 ~~~~~~DiwslG~~l~~l~t  309 (351)
                      .++.++|+||+||++|+|++
T Consensus       207 ~~~~~~Di~slG~il~~l~~  226 (303)
T 1zy4_A          207 HYNEKIDMYSLGIIFFEMIY  226 (303)
T ss_dssp             CCCTHHHHHHHHHHHHHHHS
T ss_pred             CCcchhhHHHHHHHHHHHHh
Confidence            67999999999999999998

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=2.6e-31  Score=246.78  Aligned_cols=181  Identities=17%  Similarity=0.153  Sum_probs=147.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh--CCCCCCCCcceeeeeeeEeeC----CeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI--GEKDPNGRHLCVKMLDWFDYH----GHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l--~h~~~~g~~~Iv~l~~~f~~~----~~~~l   75 (351)
                      ++||+|+||+||+|.+  +++.||+|++....  .....+|..++..+  .|+|      |+++++++...    .++|+
T Consensus        43 ~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~--~~~~~~e~~~~~~~~~~h~~------i~~~~~~~~~~~~~~~~~~l  112 (337)
T 3mdy_A           43 KQIGKGRYGEVWMGKW--RGEKVAVKVFFTTE--EASWFRETEIYQTVLMRHEN------ILGFIAADIKGTGSWTQLYL  112 (337)
T ss_dssp             EEEEEETTEEEEEEEE--TTEEEEEEEEEGGG--HHHHHHHHHHHTSTTCCCTT------BCCEEEEEEESCGGGCEEEE
T ss_pred             eEeecCCCeEEEEEEE--CCceEEEEEEeccc--cchhhhHHHHHHHHhhcCCC------eeeEEEEEccCCCCCCceEE
Confidence            6799999999999985  59999999997543  33444566666555  5655      99999999988    68999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc--------ccccc
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK--------KREVR  146 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~--------~i~h~  146 (351)
                      ||||+ +++|.++++..   .+++..+..++.|++.|                       |.|||++        |++||
T Consensus       113 v~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~~~~~~~~~ivH~  166 (337)
T 3mdy_A          113 ITDYHENGSLYDYLKST---TLDAKSMLKLAYSSVSG-----------------------LCHLHTEIFSTQGKPAIAHR  166 (337)
T ss_dssp             EECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHH-----------------------HHHHHSCBCSTTCBCCEECS
T ss_pred             EEeccCCCcHHHHhhcc---CCCHHHHHHHHHHHHHH-----------------------HHHHHHhhhhhccCCCEEec
Confidence            99999 88999999775   47888888888888888                       9999998        99999


Q ss_pred             ccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         147 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      |+|+.||.+.                                                                      
T Consensus       167 Dikp~Nill~----------------------------------------------------------------------  176 (337)
T 3mdy_A          167 DLKSKNILVK----------------------------------------------------------------------  176 (337)
T ss_dssp             CCCGGGEEEC----------------------------------------------------------------------
T ss_pred             ccchHHEEEC----------------------------------------------------------------------
Confidence            9999999886                                                                      


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeecCCCCCc-----
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILELGWAQP-----  294 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~-----  294 (351)
                                               ....+||+|||++.....       ......||+.|+|||++.+......     
T Consensus       177 -------------------------~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  231 (337)
T 3mdy_A          177 -------------------------KNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYI  231 (337)
T ss_dssp             -------------------------TTSCEEECCCTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHH
T ss_pred             -------------------------CCCCEEEEeCCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCcc
Confidence                                     235699999999865321       1234679999999999987766555     


Q ss_pred             -cceeeeeeeeEeecccccc
Q psy2006         295 -CDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       295 -~DiwslG~~l~~l~tG~~p  313 (351)
                       +|+|||||++|+|+||..|
T Consensus       232 ~~DiwslG~il~el~tg~~~  251 (337)
T 3mdy_A          232 MADMYSFGLILWEVARRCVS  251 (337)
T ss_dssp             HHHHHHHHHHHHHHHTTBCB
T ss_pred             ccchHHHHHHHHHHHhccCc
Confidence             8999999999999999333

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.97  E-value=2.3e-31  Score=245.11  Aligned_cols=198  Identities=13%  Similarity=0.147  Sum_probs=154.8

Q ss_pred             ccccCcccceEEEEEEee---cCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC----
Q psy2006           2 CSLNCVASNHVCTNVVYE---VDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG----   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~---~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~----   71 (351)
                      +.||+|+||+||+|.+..   +++.||+|++...   ....+.+.+|+++++.++|+|      |+++++++...+    
T Consensus        40 ~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~~  113 (313)
T 3brb_A           40 KILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPN------VIRLLGVCIEMSSQGI  113 (313)
T ss_dssp             EEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTT------BCCCCEEEEC------
T ss_pred             cceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCC------eeeeeEEEeeccccCC
Confidence            569999999999998875   4568999999753   233456789999999999877      999999998765    


Q ss_pred             -eEEEEEecc-CCCHHHHHHhc----CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccc
Q psy2006          72 -HMCIAFEIL-GLSVFDFLKEN----NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREV  145 (351)
Q Consensus        72 -~~~lV~E~~-g~sL~~~l~~~----~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h  145 (351)
                       ..++||||+ +++|.+++...    ....+++..+..++.|++.|                       |.|||++|++|
T Consensus       114 ~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH  170 (313)
T 3brb_A          114 PKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALG-----------------------MEYLSNRNFLH  170 (313)
T ss_dssp             -CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHH-----------------------HHHHHTTTCCC
T ss_pred             cccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccc
Confidence             469999999 88999998543    22357777788888888777                       99999999999


Q ss_pred             cccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         146 RRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       146 ~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      ||+|+.||.+.                                                                     
T Consensus       171 ~dikp~NIli~---------------------------------------------------------------------  181 (313)
T 3brb_A          171 RDLAARNCMLR---------------------------------------------------------------------  181 (313)
T ss_dssp             CCCSGGGEEEC---------------------------------------------------------------------
T ss_pred             CCCCcceEEEc---------------------------------------------------------------------
Confidence            99999999886                                                                     


Q ss_pred             chhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeee
Q psy2006         226 SSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSI  300 (351)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~Diwsl  300 (351)
                                                ....+||+|||++.....     ......+++.|+|||.+.+..++.++|+|||
T Consensus       182 --------------------------~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~sl  235 (313)
T 3brb_A          182 --------------------------DDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAF  235 (313)
T ss_dssp             --------------------------TTSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHH
T ss_pred             --------------------------CCCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHH
Confidence                                      235699999999865322     1233456788999999998899999999999


Q ss_pred             eeeeEeecc-ccccccccCCCcee
Q psy2006         301 GCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       301 G~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      ||++|+|++ |..||.+.+..+.+
T Consensus       236 G~il~el~~~g~~p~~~~~~~~~~  259 (313)
T 3brb_A          236 GVTMWEIATRGMTPYPGVQNHEMY  259 (313)
T ss_dssp             HHHHHHHHTTSCCSSTTCCGGGHH
T ss_pred             HHHHHHHHhcCCCCCccCCHHHHH
Confidence            999999999 99999887766554

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.97  E-value=2e-31  Score=256.88  Aligned_cols=195  Identities=14%  Similarity=0.113  Sum_probs=152.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+||+||. ....+++.||||++....  ...+.+|+++|+.+ +|+|      |+++++++....++|||||||
T Consensus        30 ~~LG~G~~G~V~~-~~~~~~~~vAvK~~~~~~--~~~~~~E~~~l~~l~~Hpn------Iv~l~~~~~~~~~~~lv~E~~  100 (432)
T 3p23_A           30 DVLGHGAEGTIVY-RGMFDNRDVAVKRILPEC--FSFADREVQLLRESDEHPN------VIRYFCTEKDRQFQYIAIELC  100 (432)
T ss_dssp             EEEEECGGGCEEE-EEESSSSEEEEEEECTTT--EEECHHHHHHHHHSCCCTT------BCCEEEEEEETTEEEEEEECC
T ss_pred             CeeecCcCEEEEE-EEEeCCeEEEEEEECHHH--HHHHHHHHHHHHhccCCCC------cCeEEEEEecCCEEEEEEECC
Confidence            5799999999763 334789999999997532  23456899999999 6777      999999999999999999999


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+..-+ 
T Consensus       101 ~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivHrDlKp~NIll~~~~-  155 (432)
T 3p23_A          101 AATLQEYVEQKD-FAHLGLEPITLLQQTTSG-----------------------LAHLHSLNIVHRDLKPHNILISMPN-  155 (432)
T ss_dssp             SEEHHHHHHSSS-CCCCSSCHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCSTTSEEECCCB-
T ss_pred             CCCHHHHHHhcC-CCccchhHHHHHHHHHHH-----------------------HHHHHHCcCEeCCCCHHHEEEecCC-
Confidence            889999998765 244555566777777777                       9999999999999999999886100 


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       156 --------------------------------------------------------------------------------  155 (432)
T 3p23_A          156 --------------------------------------------------------------------------------  155 (432)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceec------cccccccccceeeCceeee---cCCCCCccceeeeeeeeEeecc-c
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDD------EHHSTIVSTRHYRAPEVIL---ELGWAQPCDVWSIGCIIFELYL-G  310 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~------~~~~~~~gt~~y~aPE~~~---~~~~~~~~DiwslG~~l~~l~t-G  310 (351)
                               ......++|+|||++....      .......||+.|+|||++.   +..++.++||||+||++|++++ |
T Consensus       156 ---------~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g  226 (432)
T 3p23_A          156 ---------AHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEG  226 (432)
T ss_dssp             ---------TTTBCCEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTS
T ss_pred             ---------CCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCC
Confidence                     0013468899999987532      1234567999999999997   3566789999999999999999 9


Q ss_pred             cccccccCC
Q psy2006         311 ITLMARKTK  319 (351)
Q Consensus       311 ~~pf~~~~~  319 (351)
                      ..||.....
T Consensus       227 ~~pf~~~~~  235 (432)
T 3p23_A          227 SHPFGKSLQ  235 (432)
T ss_dssp             CBTTBSTTT
T ss_pred             CCCcchhhH
Confidence            999966543

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.97  E-value=2.1e-31  Score=256.92  Aligned_cols=204  Identities=20%  Similarity=0.169  Sum_probs=150.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +.||+|+||+||.+ ...+++.||||++....  .+.+.+|+++|+.+ .|+|      |+++++++...+++|||||||
T Consensus        21 ~~LG~G~~g~V~~~-~~~~g~~vAvK~~~~~~--~~~~~~E~~~l~~l~~Hpn------Iv~~~~~~~~~~~~~lv~E~~   91 (434)
T 2rio_A           21 KILGYGSSGTVVFQ-GSFQGRPVAVKRMLIDF--CDIALMEIKLLTESDDHPN------VIRYYCSETTDRFLYIALELC   91 (434)
T ss_dssp             EEEEECSTTCEEEE-EESSSSEEEEEEEEGGG--HHHHHHHHHHHHHHTTSTT------BCCEEEEEECSSEEEEEECCC
T ss_pred             CeEeeCCCeEEEEE-EEECCeEEEEEEEcHHH--HHHHHHHHHHHHhccCCCC------cCeEEEEEecCCeEEEEEecC
Confidence            46999999999875 34689999999997532  45678899999987 6777      999999999999999999999


Q ss_pred             CCCHHHHHHhcCCCCC-----chHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          81 GLSVFDFLKENNYLPY-----SLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~-----~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      +++|.+++........     ++..+..++.|++.|                       |+|||++|++|||+|+.||.+
T Consensus        92 ~gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivHrDLkp~NILl  148 (434)
T 2rio_A           92 NLNLQDLVESKNVSDENLKLQKEYNPISLLRQIASG-----------------------VAHLHSLKIIHRDLKPQNILV  148 (434)
T ss_dssp             SEEHHHHHHTC------------CCHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEE
T ss_pred             CCCHHHHHhccCCCchhhhhccchhHHHHHHHHHHH-----------------------HHHHHHCCccccCCChHhEEE
Confidence            8899999987642111     122334455555555                       999999999999999999998


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      ..-|-.....                                                                      
T Consensus       149 ~~~~~~~~~~----------------------------------------------------------------------  158 (434)
T 2rio_A          149 STSSRFTADQ----------------------------------------------------------------------  158 (434)
T ss_dssp             ECCHHHHSCC----------------------------------------------------------------------
T ss_pred             ecCccccccc----------------------------------------------------------------------
Confidence            7311000000                                                                      


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc-------cccccccceeeCceeeec-------CCCCCccceeeee
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-------HSTIVSTRHYRAPEVILE-------LGWAQPCDVWSIG  301 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-------~~~~~gt~~y~aPE~~~~-------~~~~~~~DiwslG  301 (351)
                                  ........+||+|||++......       .....||+.|+|||++.+       ..++.++|+||||
T Consensus       159 ------------~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG  226 (434)
T 2rio_A          159 ------------QTGAENLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMG  226 (434)
T ss_dssp             ------------TTCCCSCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHH
T ss_pred             ------------ccCCCceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHH
Confidence                        00012457999999998763321       234679999999999975       5678999999999


Q ss_pred             eeeEeecc-ccccccccCC
Q psy2006         302 CIIFELYL-GITLMARKTK  319 (351)
Q Consensus       302 ~~l~~l~t-G~~pf~~~~~  319 (351)
                      |++|+|+| |..||.....
T Consensus       227 ~il~ellt~g~~Pf~~~~~  245 (434)
T 2rio_A          227 CVFYYILSKGKHPFGDKYS  245 (434)
T ss_dssp             HHHHHHHTTSCCTTCSTTT
T ss_pred             HHHHHHHhCCCCCCCCchh
Confidence            99999998 9999976543

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.97  E-value=2.1e-31  Score=246.99  Aligned_cols=191  Identities=20%  Similarity=0.233  Sum_probs=159.8

Q ss_pred             ccccCcccceEEEEE----EeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC--eEE
Q psy2006           2 CSLNCVASNHVCTNV----VYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG--HMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~----~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~--~~~   74 (351)
                      ++||+|+||+||+|.    +..+++.||+|++... ....+.+.+|+++++.++|+|      |+++++++...+  +++
T Consensus        47 ~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~------iv~~~~~~~~~~~~~~~  120 (326)
T 2w1i_A           47 QQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDN------IVKYKGVCYSAGRRNLK  120 (326)
T ss_dssp             EEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTT------BCCEEEEECC----CCE
T ss_pred             eeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCC------eeeEEEEEEecCCCceE
Confidence            679999999999998    4568999999999753 234467889999999998877      999999987655  899


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|+|+|+.||
T Consensus       121 lv~e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------L~~LH~~~ivH~dikp~NI  176 (326)
T 2w1i_A          121 LIMEYLPYGSLRDYLQKHK-ERIDHIKLLQYTSQICKG-----------------------MEYLGTKRYIHRDLATRNI  176 (326)
T ss_dssp             EEECCCTTCBHHHHHHHST-TSSCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGE
T ss_pred             EEEECCCCCCHHHHHHhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEeccCCCcceE
Confidence            999999 889999998764 357788888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       177 li~-----------------------------------------------------------------------------  179 (326)
T 2w1i_A          177 LVE-----------------------------------------------------------------------------  179 (326)
T ss_dssp             EEE-----------------------------------------------------------------------------
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            887                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                        ....++|+|||++......      .....+++.|+|||.+.+..++.++|+|||||+++++
T Consensus       180 ------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el  241 (326)
T 2w1i_A          180 ------------------NENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYEL  241 (326)
T ss_dssp             ------------------ETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHH
Confidence                              2356899999998763322      2234567789999999888889999999999999999


Q ss_pred             cccccccccc
Q psy2006         308 YLGITLMARK  317 (351)
Q Consensus       308 ~tG~~pf~~~  317 (351)
                      +||..||...
T Consensus       242 ~tg~~~~~~~  251 (326)
T 2w1i_A          242 FTYIEKSKSP  251 (326)
T ss_dssp             HHTTCGGGSH
T ss_pred             HhcCCCCCCC
Confidence            9999998643

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.96  E-value=8.3e-31  Score=241.43  Aligned_cols=192  Identities=21%  Similarity=0.209  Sum_probs=142.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      ++||+|+||+||+|.+..+++.||+|++....   ...+....+..+++.+.|+|      |+++++++..+++.|+|||
T Consensus        31 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------i~~~~~~~~~~~~~~lv~e  104 (318)
T 2dyl_A           31 GEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPY------IVQCFGTFITNTDVFIAME  104 (318)
T ss_dssp             EEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTT------BCCEEEEEECSSEEEEEEC
T ss_pred             ceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCc------eeeEEEEEecCCcEEEEEe
Confidence            57999999999999998899999999997532   11223334445677777777      9999999999999999999


Q ss_pred             ccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCeEEee
Q psy2006          79 ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni~l~D  157 (351)
                      |+++.+..+..... ..+++..+..++.|++.|                       |.|||++ |++|+|+++.||.+. 
T Consensus       105 ~~~~~~~~l~~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~~i~H~dlkp~Nil~~-  159 (318)
T 2dyl_A          105 LMGTCAEKLKKRMQ-GPIPERILGKMTVAIVKA-----------------------LYYLKEKHGVIHRDVKPSNILLD-  159 (318)
T ss_dssp             CCSEEHHHHHHHHT-SCCCHHHHHHHHHHHHHH-----------------------HHHHHHHHCCCCCCCCGGGEEEC-
T ss_pred             ccCCcHHHHHHHhc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhhCCEEeCCCCHHHEEEC-
Confidence            99777776665543 467888888888888888                       9999996 999999999999886 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (318)
T 2dyl_A          160 --------------------------------------------------------------------------------  159 (318)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeee-----cCCCCCccceeeeeeeeEeeccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                    ....+||+|||++....  .......||+.|+|||.+.     ...++.++|+|||||++|+|++|
T Consensus       160 --------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g  225 (318)
T 2dyl_A          160 --------------ERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATG  225 (318)
T ss_dssp             --------------TTSCEEECCCTTC--------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHS
T ss_pred             --------------CCCCEEEEECCCchhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhC
Confidence                          23569999999986532  2234467899999999984     45678899999999999999999


Q ss_pred             cccccccC
Q psy2006         311 ITLMARKT  318 (351)
Q Consensus       311 ~~pf~~~~  318 (351)
                      ..||....
T Consensus       226 ~~pf~~~~  233 (318)
T 2dyl_A          226 QFPYKNCK  233 (318)
T ss_dssp             SCTTTTCC
T ss_pred             CCCCCCCC
Confidence            99998743

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.96  E-value=3.8e-31  Score=264.75  Aligned_cols=196  Identities=22%  Similarity=0.241  Sum_probs=166.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee------CCe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY------HGH   72 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~------~~~   72 (351)
                      .++||+|+||+||+|.+..+++.||+|++...  ....+.+.+|+++|+.++|+|      |+++++++..      .++
T Consensus        19 ~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~Hpn------IV~l~~v~~~~~~~~~~~~   92 (676)
T 3qa8_A           19 KERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPN------VVSAREVPDGLQKLAPNDL   92 (676)
T ss_dssp             CCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTT------BCCEEECCTTTCCCCTTSS
T ss_pred             EEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCC------CCceeeeecccccccCCCe
Confidence            46899999999999999999999999999753  344567889999999999888      9999999876      668


Q ss_pred             EEEEEecc-CCCHHHHHHhcCC-CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNY-LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~-~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      .|+||||+ +++|.+++..... ..+++..++.++.|++.|                       |.|||+.|++|||+|+
T Consensus        93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~a-----------------------L~yLHs~gIVHrDLKP  149 (676)
T 3qa8_A           93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSA-----------------------LRYLHENRIIHRDLKP  149 (676)
T ss_dssp             CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHH-----------------------HHHHHHTTBCCCCCCS
T ss_pred             EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCccCCCCH
Confidence            99999999 9999999987532 357788888888888888                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      +||.+.+-|                                                                       
T Consensus       150 ~NILl~~~g-----------------------------------------------------------------------  158 (676)
T 3qa8_A          150 ENIVLQPGP-----------------------------------------------------------------------  158 (676)
T ss_dssp             TTEEEECCS-----------------------------------------------------------------------
T ss_pred             HHeEeecCC-----------------------------------------------------------------------
Confidence            999987211                                                                       


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                           ....++|+|||.+.....  ......||+.|+|||.+.+..++.++|+||+||++|+++
T Consensus       159 ---------------------~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLl  217 (676)
T 3qa8_A          159 ---------------------QRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECI  217 (676)
T ss_dssp             ---------------------SSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHH
T ss_pred             ---------------------CceeEEEcccccccccccccccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHH
Confidence                                 123589999999876332  334568899999999999999999999999999999999


Q ss_pred             ccccccccc
Q psy2006         309 LGITLMARK  317 (351)
Q Consensus       309 tG~~pf~~~  317 (351)
                      +|..||.+.
T Consensus       218 tG~~Pf~~~  226 (676)
T 3qa8_A          218 TGFRPFLPN  226 (676)
T ss_dssp             SSCSSCCSS
T ss_pred             HCCCCCCcc
Confidence            999999764

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.96  E-value=1.7e-31  Score=245.85  Aligned_cols=191  Identities=26%  Similarity=0.389  Sum_probs=155.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh-------hhHHHHHHHHHHHHh----CCCCCCCCcceeeeeeeEeeC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK-------YREAARLEINALQKI----GEKDPNGRHLCVKMLDWFDYH   70 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~-------~~~~~~~E~~~l~~l----~h~~~~g~~~Iv~l~~~f~~~   70 (351)
                      +.||+|+||+||+|.+..+++.||+|++.....       ....+.+|+.+++++    +|+|      |+++++++...
T Consensus        37 ~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~------i~~~~~~~~~~  110 (312)
T 2iwi_A           37 PLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPG------VIRLLDWFETQ  110 (312)
T ss_dssp             EEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSS------BCCEEEEC---
T ss_pred             eEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCC------eeeEEEEEecC
Confidence            579999999999999988999999999975321       223446799999999    6666      99999999999


Q ss_pred             CeEEEEEec-c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccccc
Q psy2006          71 GHMCIAFEI-L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV  148 (351)
Q Consensus        71 ~~~~lV~E~-~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~  148 (351)
                      +..++|||+ + +++|.+++....  .+++..+..++.|++.|                       |.|||++|++|||+
T Consensus       111 ~~~~~v~e~~~~~~~L~~~l~~~~--~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~i~H~dl  165 (312)
T 2iwi_A          111 EGFMLVLERPLPAQDLFDYITEKG--PLGEGPSRCFFGQVVAA-----------------------IQHCHSRGVVHRDI  165 (312)
T ss_dssp             --CEEEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHHTEECCCC
T ss_pred             CeEEEEEEecCCCCCHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecCC
Confidence            999999998 5 889999998865  57888888888888888                       99999999999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      |+.||.+..                                                                       
T Consensus       166 kp~Nil~~~-----------------------------------------------------------------------  174 (312)
T 2iwi_A          166 KDENILIDL-----------------------------------------------------------------------  174 (312)
T ss_dssp             SGGGEEEET-----------------------------------------------------------------------
T ss_pred             ChhhEEEeC-----------------------------------------------------------------------
Confidence            999998860                                                                       


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCC-CCccceeeeeeeeEe
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFE  306 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~  306 (351)
                                             ....++|+|||++.... .......|++.|+|||++.+..+ +.++|+|||||++|+
T Consensus       175 -----------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~  231 (312)
T 2iwi_A          175 -----------------------RRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYD  231 (312)
T ss_dssp             -----------------------TTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHH
T ss_pred             -----------------------CCCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHH
Confidence                                   13568999999987643 33455678999999999987776 458999999999999


Q ss_pred             ecccccccccc
Q psy2006         307 LYLGITLMARK  317 (351)
Q Consensus       307 l~tG~~pf~~~  317 (351)
                      +++|..||...
T Consensus       232 l~~g~~pf~~~  242 (312)
T 2iwi_A          232 MVCGDIPFERD  242 (312)
T ss_dssp             HHHSSCSCCSH
T ss_pred             HHHCCCCCCCh
Confidence            99999999764

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.96  E-value=1.3e-30  Score=242.74  Aligned_cols=187  Identities=16%  Similarity=0.155  Sum_probs=155.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHH--hCCCCCCCCcceeeeeeeEeeCC----eEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQK--IGEKDPNGRHLCVKMLDWFDYHG----HMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~--l~h~~~~g~~~Iv~l~~~f~~~~----~~~l   75 (351)
                      +.||+|+||+||+|.+  +++.||+|++...  ....+.+|+++++.  ++|+|      |+++++++....    ++|+
T Consensus        48 ~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~--~~~~~~~e~~~~~~~~l~h~n------i~~~~~~~~~~~~~~~~~~l  117 (342)
T 1b6c_B           48 ESIGKGRFGEVWRGKW--RGEEVAVKIFSSR--EERSWFREAEIYQTVMLRHEN------ILGFIAADNKDNGTWTQLWL  117 (342)
T ss_dssp             EEEEEETTEEEEEEEE--TTEEEEEEEECGG--GHHHHHHHHHHHHHSCCCCTT------BCCEEEEEECCCSSCCCEEE
T ss_pred             eeecCCCCcEEEEEEE--cCccEEEEEeCch--hHHHHHHHHHHHHHhhcCCCc------EEEEEeeecccCCccceeEE
Confidence            5799999999999995  6999999999753  24566789999988  56666      999999998876    8999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccc--------ccccccc
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN--------KKKREVR  146 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH--------~~~i~h~  146 (351)
                      ||||+ +++|.+++...   .+++..+..++.|++.|                       |.|||        +.+++||
T Consensus       118 v~e~~~~g~L~~~l~~~---~~~~~~~~~i~~~i~~~-----------------------l~~lH~~~~~~~~~~~ivH~  171 (342)
T 1b6c_B          118 VSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASG-----------------------LAHLHMEIVGTQGKPAIAHR  171 (342)
T ss_dssp             EECCCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHH-----------------------HHHHHCCBCSTTCBCEEECS
T ss_pred             EEeecCCCcHHHHHhcc---CccHHHHHHHHHHHHHH-----------------------HHHHHHHHhhhcccCCeeeC
Confidence            99999 78999999874   47888888888888888                       99999        8999999


Q ss_pred             ccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         147 RVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      |+|+.||.+.                                                                      
T Consensus       172 Dlkp~NIll~----------------------------------------------------------------------  181 (342)
T 1b6c_B          172 DLKSKNILVK----------------------------------------------------------------------  181 (342)
T ss_dssp             CCSGGGEEEC----------------------------------------------------------------------
T ss_pred             CCCHHHEEEC----------------------------------------------------------------------
Confidence            9999999886                                                                      


Q ss_pred             hhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeecCC------CCC
Q psy2006         227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILELG------WAQ  293 (351)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~------~~~  293 (351)
                                               ....+||+|||++.....       ......||+.|+|||++.+..      ++.
T Consensus       182 -------------------------~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~  236 (342)
T 1b6c_B          182 -------------------------KNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFK  236 (342)
T ss_dssp             -------------------------TTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHH
T ss_pred             -------------------------CCCCEEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCC
Confidence                                     235699999999876432       224457899999999987652      236


Q ss_pred             ccceeeeeeeeEeeccc----------cccccccCC
Q psy2006         294 PCDVWSIGCIIFELYLG----------ITLMARKTK  319 (351)
Q Consensus       294 ~~DiwslG~~l~~l~tG----------~~pf~~~~~  319 (351)
                      ++|+|||||++|+|+||          ..||.....
T Consensus       237 ~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~  272 (342)
T 1b6c_B          237 RADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVP  272 (342)
T ss_dssp             HHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSC
T ss_pred             cccHHHHHHHHHHHHhccCcCCcccccccCccccCc
Confidence            89999999999999999          678866543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.96  E-value=2.9e-31  Score=269.66  Aligned_cols=186  Identities=15%  Similarity=0.186  Sum_probs=156.1

Q ss_pred             ccccCcccceEEEEEEee-cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCe-----E
Q psy2006           2 CSLNCVASNHVCTNVVYE-VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH-----M   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~-----~   73 (351)
                      ++||+|+||+||+|.+.. +++.||||++...  ......+.+|+++|+.++|+|      |++++++|...+.     .
T Consensus        86 ~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~------iv~~~~~~~~~~~~~~~~~  159 (681)
T 2pzi_A           86 GCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPS------IVQIFNFVEHTDRHGDPVG  159 (681)
T ss_dssp             EEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTT------BCCEEEEEEEECTTSCEEE
T ss_pred             EEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCC------cCeEeeeEeecCCCCCcee
Confidence            579999999999999976 7899999998643  234456789999999999887      9999999998775     7


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ||||||+ |++|.+++..    .+++..+..++.|++.+                       |.|||++||+|||+|+.|
T Consensus       160 ~lv~E~~~g~~L~~~~~~----~l~~~~~~~~~~qi~~a-----------------------L~~lH~~giiHrDlkp~N  212 (681)
T 2pzi_A          160 YIVMEYVGGQSLKRSKGQ----KLPVAEAIAYLLEILPA-----------------------LSYLHSIGLVYNDLKPEN  212 (681)
T ss_dssp             EEEEECCCCEECC----C----CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGG
T ss_pred             EEEEEeCCCCcHHHHHhC----CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCeecccChHH
Confidence            9999999 8899887654    57888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       213 Ill~----------------------------------------------------------------------------  216 (681)
T 2pzi_A          213 IMLT----------------------------------------------------------------------------  216 (681)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             eEEe----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                          ...+||+|||++...... ....||+.|+|||++.+.. +.++|||||||++++|++|.+
T Consensus       217 --------------------~~~~kl~DFG~a~~~~~~-~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~  274 (681)
T 2pzi_A          217 --------------------EEQLKLIDLGAVSRINSF-GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLP  274 (681)
T ss_dssp             --------------------SSCEEECCCTTCEETTCC-SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCC
T ss_pred             --------------------CCcEEEEecccchhcccC-CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCC
Confidence                                136899999998764433 5567999999999986654 889999999999999999999


Q ss_pred             cccccC
Q psy2006         313 LMARKT  318 (351)
Q Consensus       313 pf~~~~  318 (351)
                      ||.+..
T Consensus       275 ~~~~~~  280 (681)
T 2pzi_A          275 TRNGRY  280 (681)
T ss_dssp             EETTEE
T ss_pred             CCcccc
Confidence            997643

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.96  E-value=3.5e-31  Score=240.94  Aligned_cols=196  Identities=16%  Similarity=0.188  Sum_probs=152.7

Q ss_pred             ccccCcccceEEEEEEee-cCc--EEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYE-VDS--VVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-~~~--~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++||+|+||+||+|.+.. +++  .||+|++...    ....+.+.+|+++++.+.|+|      |+++++++..+. .+
T Consensus        24 ~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------i~~~~~~~~~~~-~~   96 (291)
T 1u46_A           24 EKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN------LIRLYGVVLTPP-MK   96 (291)
T ss_dssp             EECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSSS-CE
T ss_pred             eeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCC------cccEEEEEccCC-ce
Confidence            579999999999999654 333  6999999753    233467789999999998877      999999998765 89


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||+ +++|.+++.... ..+++..+..++.|++.+                       |.|||++|++|+|+|+.|+
T Consensus        97 ~v~e~~~~~~L~~~l~~~~-~~~~~~~~~~~~~~i~~~-----------------------l~~lH~~~i~H~dikp~Ni  152 (291)
T 1u46_A           97 MVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEG-----------------------MGYLESKRFIHRDLAARNL  152 (291)
T ss_dssp             EEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGE
T ss_pred             eeEecccCCCHHHHHHhcc-CCcCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCchheE
Confidence            999999 899999998753 357777788888888777                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+                                                                            
T Consensus       153 li~~----------------------------------------------------------------------------  156 (291)
T 1u46_A          153 LLAT----------------------------------------------------------------------------  156 (291)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             EEcC----------------------------------------------------------------------------
Confidence            8872                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                         ...++|+|||++......      .....+|+.|+|||++.+..++.++|+|||||+++++
T Consensus       157 -------------------~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l  217 (291)
T 1u46_A          157 -------------------RDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEM  217 (291)
T ss_dssp             -------------------TTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHH
T ss_pred             -------------------CCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHH
Confidence                               346899999998653221      2234567789999999888889999999999999999


Q ss_pred             cc-ccccccccCCCcee
Q psy2006         308 YL-GITLMARKTKTKYF  323 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~~  323 (351)
                      ++ |..||.+.+..+.+
T Consensus       218 ~~~g~~p~~~~~~~~~~  234 (291)
T 1u46_A          218 FTYGQEPWIGLNGSQIL  234 (291)
T ss_dssp             HTTSCCTTTTCCHHHHH
T ss_pred             HhCCCCCcccCCHHHHH
Confidence            99 99999887765544

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.96  E-value=1.2e-30  Score=263.52  Aligned_cols=196  Identities=19%  Similarity=0.265  Sum_probs=160.9

Q ss_pred             ccccCcccceEEEEEEeec---CcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEV---DSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~---~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+   +..||+|++...  ....+.+.+|+.+|+.++|+|      |+++++++. ++.+|+|
T Consensus       396 ~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~Hpn------Iv~l~~~~~-~~~~~lv  468 (656)
T 2j0j_A          396 RCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPH------IVKLIGVIT-ENPVWII  468 (656)
T ss_dssp             EEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEC-SSSCEEE
T ss_pred             eEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCC------CCeEEEEEe-cCceEEE
Confidence            5699999999999998653   467999998753  234467889999999999888      999999985 4679999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+
T Consensus       469 ~E~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~a-----------------------L~~LH~~givHrDikp~NILl  524 (656)
T 2j0j_A          469 MELCTLGELRSFLQVRK-FSLDLASLILYAYQLSTA-----------------------LAYLESKRFVHRDIAARNVLV  524 (656)
T ss_dssp             EECCTTCBHHHHHHHTT-TTCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEE
T ss_pred             EEcCCCCcHHHHHHhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccccccchHhEEE
Confidence            9999 899999998754 357777888888888887                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       525 ~-------------------------------------------------------------------------------  525 (656)
T 2j0j_A          525 S-------------------------------------------------------------------------------  525 (656)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             e-------------------------------------------------------------------------------
Confidence            7                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-c
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-G  310 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G  310 (351)
                                      ..+.+||+|||++......    .....+|+.|+|||++.+..++.++|+|||||++|++++ |
T Consensus       526 ----------------~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g  589 (656)
T 2j0j_A          526 ----------------SNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHG  589 (656)
T ss_dssp             ----------------ETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTS
T ss_pred             ----------------CCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcC
Confidence                            2356999999998753221    223556789999999988899999999999999999997 9


Q ss_pred             cccccccCCCcee
Q psy2006         311 ITLMARKTKTKYF  323 (351)
Q Consensus       311 ~~pf~~~~~~~~~  323 (351)
                      ..||.+.+..+.+
T Consensus       590 ~~Pf~~~~~~~~~  602 (656)
T 2j0j_A          590 VKPFQGVKNNDVI  602 (656)
T ss_dssp             CCTTTTCCHHHHH
T ss_pred             CCCCCCCCHHHHH
Confidence            9999887765544

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.96  E-value=1.7e-31  Score=256.00  Aligned_cols=203  Identities=12%  Similarity=0.047  Sum_probs=152.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCC-CCCC---CCcceeeeeeeEee----
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGE-KDPN---GRHLCVKMLDWFDY----   69 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h-~~~~---g~~~Iv~l~~~f~~----   69 (351)
                      +.||+|+||+||+|.+..+++.||||++...    ....+.+.+|+.+++.+.| .++.   .+..++...+....    
T Consensus        84 ~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (413)
T 3dzo_A           84 TVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKK  163 (413)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC--
T ss_pred             cccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCCC
Confidence            4699999999999999999999999999732    2234667899999999976 2221   11001111222211    


Q ss_pred             -------------CCeEEEEEeccCCCHHHHHHhc-----CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhH
Q psy2006          70 -------------HGHMCIAFEILGLSVFDFLKEN-----NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQL  131 (351)
Q Consensus        70 -------------~~~~~lV~E~~g~sL~~~l~~~-----~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~  131 (351)
                                   ...++++|+.++++|.++++..     ....+++..+..++.|++.|                    
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~a--------------------  223 (413)
T 3dzo_A          164 KMIRVRLDERDMWVLSRFFLYPRMQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRL--------------------  223 (413)
T ss_dssp             -------------CCSEEEEEECCSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHH--------------------
T ss_pred             ccccccCCCccccccceEEEeehhcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHH--------------------
Confidence                         1267999999999999998632     12234555666666666666                    


Q ss_pred             HhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCC
Q psy2006         132 IYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERIS  211 (351)
Q Consensus       132 ~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t  211 (351)
                         |+|||++|++|||+|+.||.+.                                                       
T Consensus       224 ---L~~LH~~~iiHrDiKp~NILl~-------------------------------------------------------  245 (413)
T 3dzo_A          224 ---LASLHHYGLVHTYLRPVDIVLD-------------------------------------------------------  245 (413)
T ss_dssp             ---HHHHHHTTEECSCCCGGGEEEC-------------------------------------------------------
T ss_pred             ---HHHHHhCCcccCCcccceEEEe-------------------------------------------------------
Confidence               9999999999999999999887                                                       


Q ss_pred             hhhhhcCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceee-----
Q psy2006         212 LSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVI-----  286 (351)
Q Consensus       212 ~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~-----  286 (351)
                                                              ..+.+||+|||++..........+| +.|+|||++     
T Consensus       246 ----------------------------------------~~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~  284 (413)
T 3dzo_A          246 ----------------------------------------QRGGVFLTGFEHLVRDGASAVSPIG-RGFAPPETTAERML  284 (413)
T ss_dssp             ----------------------------------------TTCCEEECCGGGCEETTEEECCCCC-TTTCCHHHHHHHTS
T ss_pred             ----------------------------------------cCCeEEEEeccceeecCCccccCCC-CceeCchhhhcccc
Confidence                                                    2346999999998776555666788 999999999     


Q ss_pred             -----ecCCCCCccceeeeeeeeEeeccccccccccCCCcee
Q psy2006         287 -----LELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       287 -----~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~~~~~~  323 (351)
                           .+..++.++|+|||||++|+|+||..||.+.+..+.+
T Consensus       285 ~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~~  326 (413)
T 3dzo_A          285 PFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGGS  326 (413)
T ss_dssp             TTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSCS
T ss_pred             ccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhhH
Confidence                 4455788999999999999999999999887765544

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.96  E-value=3.8e-30  Score=234.67  Aligned_cols=122  Identities=15%  Similarity=0.094  Sum_probs=105.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      ++||+|+||+||+|.+..+++.||+|++....    ...+.+.+|+.+++.+.|+|      |+++++++..+++.|+||
T Consensus        37 ~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~------iv~~~~~~~~~~~~~lv~  110 (286)
T 3uqc_A           37 IFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPG------VARVLDVVHTRAGGLVVA  110 (286)
T ss_dssp             EEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTT------BCCEEEEEEETTEEEEEE
T ss_pred             EEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCC------cceeeEEEEECCcEEEEE
Confidence            57999999999999998899999999997542    23367889999999998887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ |++|.++++..   . ....+..++.|++.|                       |+|||++|++|||+|++||.+.
T Consensus       111 e~~~g~~L~~~l~~~---~-~~~~~~~i~~ql~~a-----------------------L~~lH~~givH~Dikp~NIll~  163 (286)
T 3uqc_A          111 EWIRGGSLQEVADTS---P-SPVGAIRAMQSLAAA-----------------------ADAAHRAGVALSIDHPSRVRVS  163 (286)
T ss_dssp             ECCCEEEHHHHHTTC---C-CHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCSGGGEEEE
T ss_pred             EecCCCCHHHHHhcC---C-ChHHHHHHHHHHHHH-----------------------HHHHHHCCCccCCCCcccEEEc
Confidence            999 88999998542   2 333566677777777                       9999999999999999999987

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.96  E-value=6.6e-30  Score=234.11  Aligned_cols=177  Identities=18%  Similarity=0.267  Sum_probs=145.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHH-HHhCCCCCCCCcceeeeeeeEee----CCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINAL-QKIGEKDPNGRHLCVKMLDWFDY----HGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l-~~l~h~~~~g~~~Iv~l~~~f~~----~~~~~lV   76 (351)
                      +.||+|+||+||+|.+..+++.||+|++..    .....+|+.++ +.+.|+|      |++++++|..    .+++|+|
T Consensus        24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~----~~~~~~e~~~~~~~~~h~~------i~~~~~~~~~~~~~~~~~~lv   93 (299)
T 3m2w_A           24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD----CPKARREVELHWRASQCPH------IVRIVDVYENLYAGRKCLLIV   93 (299)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEC----SHHHHHHHHHHHHHTTSTT------BCCEEEEEEEEETTEEEEEEE
T ss_pred             cccccCCCeEEEEEEEcCCCcEEEEEEecc----cHHHHHHHHHHHHhccCCC------chhHHhhhhhhcCCCceEEEE
Confidence            459999999999999999999999999975    34567889888 4456666      9999999987    6689999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++.......+++..++.++.|++.|                       |.|||++|++|||+|+.||.+
T Consensus        94 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~-----------------------l~~lH~~~i~H~dlkp~Nil~  150 (299)
T 3m2w_A           94 MECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEA-----------------------IQYLHSINIAHRDVKPENLLY  150 (299)
T ss_dssp             ECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEE
T ss_pred             EeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCCCCHHHEEE
Confidence            9999 8899999998765678888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .+-+                                                                            
T Consensus       151 ~~~~----------------------------------------------------------------------------  154 (299)
T 3m2w_A          151 TSKR----------------------------------------------------------------------------  154 (299)
T ss_dssp             SSSS----------------------------------------------------------------------------
T ss_pred             ecCC----------------------------------------------------------------------------
Confidence            6100                                                                            


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                      ....++|+|||++....                   +..++.++|+||+||++|+|++|..||.
T Consensus       155 ----------------~~~~~kl~Dfg~a~~~~-------------------~~~~~~~~DiwslG~il~el~tg~~pf~  199 (299)
T 3m2w_A          155 ----------------PNAILKLTDFGFAKETT-------------------GEKYDKSCDMWSLGVIMYILLCGYPPFY  199 (299)
T ss_dssp             ----------------TTCCEEECCCTTCEECT-------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCC
T ss_pred             ----------------CCCcEEEeccccccccc-------------------cccCCchhhHHHHHHHHHHHHHCCCCCC
Confidence                            13569999999875322                   2446778999999999999999999998


Q ss_pred             ccCCCce
Q psy2006         316 RKTKTKY  322 (351)
Q Consensus       316 ~~~~~~~  322 (351)
                      +.+..+.
T Consensus       200 ~~~~~~~  206 (299)
T 3m2w_A          200 SNHGLAI  206 (299)
T ss_dssp             C------
T ss_pred             CCcchhh
Confidence            7765543

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.96  E-value=4.4e-31  Score=243.57  Aligned_cols=194  Identities=14%  Similarity=0.201  Sum_probs=158.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      .+.||+|+||+||+|.+.   ..||+|++....   ...+.+.+|+.+++.++|+|      |+++++++...+++++||
T Consensus        38 ~~~lg~G~~g~V~~~~~~---~~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~------iv~~~~~~~~~~~~~iv~  108 (319)
T 2y4i_B           38 GELIGKGRFGQVYHGRWH---GEVAIRLIDIERDNEDQLKAFKREVMAYRQTRHEN------VVLFMGACMSPPHLAIIT  108 (319)
T ss_dssp             CCBCCCSSSSEEEEEEES---SSEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTT------BCCCCEEEECSSCEEEEC
T ss_pred             eeEeccCCceEEEEEEEc---CeEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCC------EeEEEEEEecCCceEEEe
Confidence            368999999999999863   359999997532   22345678999999998877      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||+ +++|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|+.||.+.
T Consensus       109 e~~~~~~L~~~l~~~~-~~~~~~~~~~i~~qi~~a-----------------------l~~lH~~~i~H~dlkp~NIl~~  164 (319)
T 2y4i_B          109 SLCKGRTLYSVVRDAK-IVLDVNKTRQIAQEIVKG-----------------------MGYLHAKGILHKDLKSKNVFYD  164 (319)
T ss_dssp             BCCCSEEHHHHTTSSC-CCCCSHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCSTTEEEC
T ss_pred             ecccCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccccCCChhhEEEe
Confidence            999 899999997754 357888888888888888                       9999999999999999999875


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       165 --------------------------------------------------------------------------------  164 (319)
T 2y4i_B          165 --------------------------------------------------------------------------------  164 (319)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec--------cccccccccceeeCceeeec---------CCCCCccceee
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--------EHHSTIVSTRHYRAPEVILE---------LGWAQPCDVWS  299 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--------~~~~~~~gt~~y~aPE~~~~---------~~~~~~~Diws  299 (351)
                                      ...++|+|||++....        .......|++.|+|||++.+         ..++.++|+||
T Consensus       165 ----------------~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~s  228 (319)
T 2y4i_B          165 ----------------NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFA  228 (319)
T ss_dssp             ------------------CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHH
T ss_pred             ----------------CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHH
Confidence                            1358899999875421        12234568999999999874         34688999999


Q ss_pred             eeeeeEeeccccccccccCCCcee
Q psy2006         300 IGCIIFELYLGITLMARKTKTKYF  323 (351)
Q Consensus       300 lG~~l~~l~tG~~pf~~~~~~~~~  323 (351)
                      |||++|++++|..||...+..+..
T Consensus       229 lG~il~el~~g~~p~~~~~~~~~~  252 (319)
T 2y4i_B          229 LGTIWYELHAREWPFKTQPAEAII  252 (319)
T ss_dssp             HHHHHHHHHHSSCSSSSCCHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCCCHHHHH
Confidence            999999999999999887655543

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.95  E-value=7.1e-29  Score=246.56  Aligned_cols=182  Identities=17%  Similarity=0.036  Sum_probs=129.8

Q ss_pred             ccCcccceEEEEEEeecCcEEEEEEecch-----------hhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeCC
Q psy2006           4 LNCVASNHVCTNVVYEVDSVVALKIIKNV-----------EKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         4 iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----------~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      .+.|++|.+..++....|+.||+|++.+.           +...+.+.+|+++|+++. |.|      |++++++|++++
T Consensus       242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~------i~~~~~~~ed~~  315 (569)
T 4azs_A          242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFD------APAVLAHGENAQ  315 (569)
T ss_dssp             -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCC------CCCEEEEEECSS
T ss_pred             cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCC------eeEEEEEEEECC
Confidence            56788888888888889999999999643           233456889999999995 444      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCC
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRR  150 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~  150 (351)
                      ++||||||| |++|.++|.+.+  ++++   ..++.||+.|                       |+|+|++||+|||+||
T Consensus       316 ~~yLVMEyv~G~~L~d~i~~~~--~l~~---~~I~~QIl~A-----------------------L~ylH~~GIIHRDIKP  367 (569)
T 4azs_A          316 SGWLVMEKLPGRLLSDMLAAGE--EIDR---EKILGSLLRS-----------------------LAALEKQGFWHDDVRP  367 (569)
T ss_dssp             EEEEEEECCCSEEHHHHHHTTC--CCCH---HHHHHHHHHH-----------------------HHHHHHTTCEESCCCG
T ss_pred             EEEEEEecCCCCcHHHHHHhCC--CCCH---HHHHHHHHHH-----------------------HHHHHHCCceeccCch
Confidence            999999999 999999998865  4443   3467777777                       9999999999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      +||+|.                                                                          
T Consensus       368 eNILL~--------------------------------------------------------------------------  373 (569)
T 4azs_A          368 WNVMVD--------------------------------------------------------------------------  373 (569)
T ss_dssp             GGEEEC--------------------------------------------------------------------------
T ss_pred             HhEEEC--------------------------------------------------------------------------
Confidence            999886                                                                          


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                           ..+.+||+|||+++...   ....+.+||+.|+|||++.+. ...++|+||+|++++.+
T Consensus       374 ---------------------~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l  431 (569)
T 4azs_A          374 ---------------------ARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNL  431 (569)
T ss_dssp             ---------------------TTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC------------------CCC
T ss_pred             ---------------------CCCCEEEeecccCeeCCCCCccccCceechhhccHHHhCCC-CCCcccccccccchhhh
Confidence                                 24579999999987532   234567899999999999654 56779999999999999


Q ss_pred             cccccccc
Q psy2006         308 YLGITLMA  315 (351)
Q Consensus       308 ~tG~~pf~  315 (351)
                      .++..+|.
T Consensus       432 ~~~~~~~~  439 (569)
T 4azs_A          432 PQPWSNWL  439 (569)
T ss_dssp             CTTHHHHH
T ss_pred             ccccchhH
Confidence            98877763

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.88  E-value=3.3e-24  Score=211.81  Aligned_cols=174  Identities=14%  Similarity=0.110  Sum_probs=132.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh---------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCe
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~   72 (351)
                      ++||+|+||+||+|.  ..++.+|+|+.....         ...+.+.+|+++|++++|+|      |+.+..++...++
T Consensus       342 ~~LG~G~fg~Vy~~~--~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~n------Iv~~~~~~~~~~~  413 (540)
T 3en9_A          342 HLIGKGAEADIKRDS--YLDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFG------IPAPYIFDVDLDN  413 (540)
T ss_dssp             ------CCEEEEEEE--CSSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGT------CCCCCEEEEETTT
T ss_pred             CEEeeCCCEEEEEEE--ECCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCC------cCceEEEEEeCCc
Confidence            479999999999995  778999999874321         12345789999999999888      9966666667778


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      .||||||+ +++|.++++.          +..++.|++.+                       |+|||+++++|||+|++
T Consensus       414 ~~lVmE~~~ggsL~~~l~~----------~~~i~~qi~~a-----------------------L~~LH~~gIiHrDiKp~  460 (540)
T 3en9_A          414 KRIMMSYINGKLAKDVIED----------NLDIAYKIGEI-----------------------VGKLHKNDVIHNDLTTS  460 (540)
T ss_dssp             TEEEEECCCSEEHHHHSTT----------CTHHHHHHHHH-----------------------HHHHHHTTEECTTCCTT
T ss_pred             cEEEEECCCCCCHHHHHHH----------HHHHHHHHHHH-----------------------HHHHHHCcCccCCCCHH
Confidence            89999999 8999999876          34667777777                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.                                                                           
T Consensus       461 NILl~---------------------------------------------------------------------------  465 (540)
T 3en9_A          461 NFIFD---------------------------------------------------------------------------  465 (540)
T ss_dssp             SEEES---------------------------------------------------------------------------
T ss_pred             HEEEC---------------------------------------------------------------------------
Confidence            99876                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceeccc----------cccccccceeeCceeeec--CCCCCccceee
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH----------HSTIVSTRHYRAPEVILE--LGWAQPCDVWS  299 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----------~~~~~gt~~y~aPE~~~~--~~~~~~~Diws  299 (351)
                                           . .+||+|||+++.....          .....||+.|+|||++..  ..|+...|+||
T Consensus       466 ---------------------~-~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws  523 (540)
T 3en9_A          466 ---------------------K-DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWE  523 (540)
T ss_dssp             ---------------------S-SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHH
T ss_pred             ---------------------C-eEEEEECccCEECCCccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHH
Confidence                                 2 6899999999764332          235789999999999987  67788889998


Q ss_pred             eeeeeEeecccccc
Q psy2006         300 IGCIIFELYLGITL  313 (351)
Q Consensus       300 lG~~l~~l~tG~~p  313 (351)
                      ..+-..+.+.++.+
T Consensus       524 ~vl~~l~~v~~r~r  537 (540)
T 3en9_A          524 IILELMKDVERRAR  537 (540)
T ss_dssp             HHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHHhccc
Confidence            77655544444433

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.80  E-value=2.3e-20  Score=169.48  Aligned_cols=112  Identities=13%  Similarity=0.074  Sum_probs=87.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-------------------hhhHHHHHHHHHHHHhCCCCCCCCcceee
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-------------------KYREAARLEINALQKIGEKDPNGRHLCVK   62 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-------------------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~   62 (351)
                      +.||+|+||.||+|.+ .+++.||+|++....                   .....+.+|+++|+.+.|  .+    +..
T Consensus        96 ~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~~--~~----v~~  168 (282)
T 1zar_A           96 KLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQG--LA----VPK  168 (282)
T ss_dssp             EEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTT--SS----SCC
T ss_pred             CEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhccC--CC----cCe
Confidence            6799999999999999 889999999996432                   124567899999999973  22    555


Q ss_pred             eeeeEeeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc
Q psy2006          63 MLDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK  141 (351)
Q Consensus        63 l~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~  141 (351)
                      +++   . ++.|+||||+ |++|.+ +..        ..+..++.|++.|                       |.|||+.
T Consensus       169 ~~~---~-~~~~lvmE~~~g~~L~~-l~~--------~~~~~i~~qi~~~-----------------------l~~lH~~  212 (282)
T 1zar_A          169 VYA---W-EGNAVLMELIDAKELYR-VRV--------ENPDEVLDMILEE-----------------------VAKFYHR  212 (282)
T ss_dssp             EEE---E-ETTEEEEECCCCEEGGG-CCC--------SCHHHHHHHHHHH-----------------------HHHHHHT
T ss_pred             EEe---c-cceEEEEEecCCCcHHH-cch--------hhHHHHHHHHHHH-----------------------HHHHHHC
Confidence            443   2 5669999999 889998 421        2244567777766                       9999999


Q ss_pred             cccccccCCCCeEEe
Q psy2006         142 KREVRRVRRCDIRLI  156 (351)
Q Consensus       142 ~i~h~d~k~~ni~l~  156 (351)
                      |++|||+||.||.+.
T Consensus       213 giiHrDlkp~NILl~  227 (282)
T 1zar_A          213 GIVHGDLSQYNVLVS  227 (282)
T ss_dssp             TEECSCCSTTSEEEE
T ss_pred             CCEeCCCCHHHEEEE
Confidence            999999999999875

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.74  E-value=5.8e-18  Score=151.61  Aligned_cols=119  Identities=12%  Similarity=0.046  Sum_probs=88.7

Q ss_pred             ccccCcccceEEEEEEeecCcE--EEEEEecchhh-------------------------hhHHHHHHHHHHHHhCCCCC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSV--VALKIIKNVEK-------------------------YREAARLEINALQKIGEKDP   54 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~--vAiK~~~~~~~-------------------------~~~~~~~E~~~l~~l~h~~~   54 (351)
                      +.||+|+||.||+|.+..+|+.  ||||+++....                         ....+.+|+++|+.+.|.+-
T Consensus        53 ~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i  132 (258)
T 1zth_A           53 GVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGV  132 (258)
T ss_dssp             EEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4699999999999998889999  99999754211                         11357889999999987652


Q ss_pred             CCCcceeeeeeeEeeCCeEEEEEeccC--C----CHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHh
Q psy2006          55 NGRHLCVKMLDWFDYHGHMCIAFEILG--L----SVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMS  128 (351)
Q Consensus        55 ~g~~~Iv~l~~~f~~~~~~~lV~E~~g--~----sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~  128 (351)
                      +    +..+++.    +..||||||++  |    +|.+....     .++..+..++.|++.+                 
T Consensus       133 ~----~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~-----~~~~~~~~i~~qi~~~-----------------  182 (258)
T 1zth_A          133 S----VPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE-----LKELDVEGIFNDVVEN-----------------  182 (258)
T ss_dssp             C----CCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG-----GGGSCHHHHHHHHHHH-----------------
T ss_pred             C----CCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc-----cChHHHHHHHHHHHHH-----------------
Confidence            2    4455543    36789999995  3    67665432     2344566666777666                 


Q ss_pred             HhHHhhhhccc-cccccccccCCCCeEEe
Q psy2006         129 YQLIYAVDYNN-KKKREVRRVRRCDIRLI  156 (351)
Q Consensus       129 ~~~~~~l~~lH-~~~i~h~d~k~~ni~l~  156 (351)
                            +.+|| +.|++|||+||+|+.+.
T Consensus       183 ------l~~lH~~~givHrDlkp~NILl~  205 (258)
T 1zth_A          183 ------VKRLYQEAELVHADLSEYNIMYI  205 (258)
T ss_dssp             ------HHHHHHTSCEECSSCSTTSEEES
T ss_pred             ------HHHHHHHCCEEeCCCCHHHEEEc
Confidence                  99999 99999999999998754

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.50  E-value=3.7e-14  Score=133.07  Aligned_cols=118  Identities=13%  Similarity=0.020  Sum_probs=82.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhh-----------------------hhHHHHHHHHHHHHhCCCCCCCCc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK-----------------------YREAARLEINALQKIGEKDPNGRH   58 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~-----------------------~~~~~~~E~~~l~~l~h~~~~g~~   58 (351)
                      ++||.|+||.||+|.+ .+|+.||||+++....                       .+-.+.+|...|.++.+.+-.   
T Consensus       101 ~~IG~Gk~a~VY~a~d-~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~gv~---  176 (397)
T 4gyi_A          101 SRIGVGKESDIMIVAD-EKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEEGFP---  176 (397)
T ss_dssp             EEEEECSSEEEEEEEC-TTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCS---
T ss_pred             CEeeeCCceEEEEEEC-CCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhcCCC---
Confidence            5799999999999998 5799999999853210                       001234688888888544311   


Q ss_pred             ceeeeeeeEeeCCeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhc
Q psy2006          59 LCVKMLDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY  137 (351)
Q Consensus        59 ~Iv~l~~~f~~~~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  137 (351)
                       +...++.   .. .||||||+ |++|.++..        ...++.++.|++.+                       +.+
T Consensus       177 -vp~p~~~---~~-~~LVME~i~G~~L~~l~~--------~~~~~~l~~qll~~-----------------------l~~  220 (397)
T 4gyi_A          177 -VPEPIAQ---SR-HTIVMSLVDALPMRQVSS--------VPDPASLYADLIAL-----------------------ILR  220 (397)
T ss_dssp             -CCCEEEE---ET-TEEEEECCSCEEGGGCCC--------CSCHHHHHHHHHHH-----------------------HHH
T ss_pred             -CCeeeec---cC-ceEEEEecCCccHhhhcc--------cHHHHHHHHHHHHH-----------------------HHH
Confidence             3333332   23 37999999 667755321        22345566666666                       999


Q ss_pred             cccccccccccCCCCeEEeecC
Q psy2006         138 NNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus       138 lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                      +|+.|++|||+||.||++.+=|
T Consensus       221 lH~~gIVHrDLKp~NILl~~dg  242 (397)
T 4gyi_A          221 LAKHGLIHGDFNEFNILIREEK  242 (397)
T ss_dssp             HHHTTEECSCCSTTSEEEEEEE
T ss_pred             HHHCCCcCCCCCHHHEEEeCCC
Confidence            9999999999999999876533

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.19  E-value=2e-11  Score=110.64  Aligned_cols=106  Identities=19%  Similarity=0.298  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhhhcC--CCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC-CCcccccCCCC
Q psy2006         100 QVRHMSYQLIYAKENN--YLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRH  176 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~-~~~~~~~~~~~  176 (351)
                      .++.++..|...|.++  +.|.+.+..                 +|+. +-+.+++||+|||+|+... ....+.+||+.
T Consensus       134 ~~~qi~~aL~ylH~~~~~IiHRDlKp~-----------------NILl-~~~~g~vKl~DFGla~~~~~~~~~~~~GTp~  195 (290)
T 3fpq_A          134 WCRQILKGLQFLHTRTPPIIHRDLKCD-----------------NIFI-TGPTGSVKIGDLGLATLKRASFAKAVIGTPE  195 (290)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCCCCCCGG-----------------GEEE-SSTTSCEEECCTTGGGGCCTTSBEESCSSCC
T ss_pred             HHHHHHHHHHHHHHCCCCEEecccChh-----------------heeE-ECCCCCEEEEeCcCCEeCCCCccCCcccCcc
Confidence            3566777777776655  555553222                 2221 2234679999999998643 33456789999


Q ss_pred             ccCCccccCCC----------------------------------------------hhhHHHHHHHHHHhhccCCCCCC
Q psy2006         177 YRAPERYMASD----------------------------------------------DEEHRQLFDLISKMLEYEPSERI  210 (351)
Q Consensus       177 ~~~pe~~~~~~----------------------------------------------~~~~~~~~~~i~~~L~~~p~~R~  210 (351)
                      |+|||.+....                                              ...++++.++|.+||..||.+||
T Consensus       196 YmAPE~~~~~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~  275 (290)
T 3fpq_A          196 FMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERY  275 (290)
T ss_dssp             CCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSC
T ss_pred             ccCHHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCCCCCCCccCCHHHHHHHHHHccCChhHCc
Confidence            99999553210                                              11235788999999999999999


Q ss_pred             ChhhhhcCCCCCC
Q psy2006         211 SLSEALRHPFFDK  223 (351)
Q Consensus       211 t~~e~l~~~~~~~  223 (351)
                      |++++|+||||++
T Consensus       276 s~~e~l~Hp~~~~  288 (290)
T 3fpq_A          276 SIKDLLNHAFFQE  288 (290)
T ss_dssp             CHHHHHTSGGGC-
T ss_pred             CHHHHhcCccccC
Confidence            9999999999975

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=99.16  E-value=2.8e-11  Score=112.25  Aligned_cols=107  Identities=19%  Similarity=0.261  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC---CCcccccCCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRH  176 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~---~~~~~~~~~~~  176 (351)
                      .++.++..|...|.+++.|.+.+.-                 +|+.  -..+++||+|||+|+...   ....+.+||+.
T Consensus       175 ~~~qi~~aL~ylH~~~IiHRDlKp~-----------------NILl--~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~  235 (346)
T 4fih_A          175 VCLAVLQALSVLHAQGVIHRDIKSD-----------------SILL--THDGRVKLSDFGFCAQVSKEVPRRKSLVGTPY  235 (346)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGG-----------------GEEE--CTTCCEEECCCTTCEECCSSSCCBCCCCSCGG
T ss_pred             HHHHHHHHHHHHHHCCcccccCCHH-----------------HEEE--CCCCCEEEecCcCceecCCCCCcccccccCcC
Confidence            4566777777776666655553322                 2222  135679999999997632   33456899999


Q ss_pred             ccCCccccCC-----------------------------------------------ChhhHHHHHHHHHHhhccCCCCC
Q psy2006         177 YRAPERYMAS-----------------------------------------------DDEEHRQLFDLISKMLEYEPSER  209 (351)
Q Consensus       177 ~~~pe~~~~~-----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R  209 (351)
                      |+|||.+...                                               ....++++.+||.+||.+||.+|
T Consensus       236 YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R  315 (346)
T 4fih_A          236 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQR  315 (346)
T ss_dssp             GCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCCSCGGGSCHHHHHHHHHHSCSSTTTS
T ss_pred             cCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHcCCChhHC
Confidence            9999955422                                               01234678899999999999999


Q ss_pred             CChhhhhcCCCCCCCC
Q psy2006         210 ISLSEALRHPFFDKLP  225 (351)
Q Consensus       210 ~t~~e~l~~~~~~~~~  225 (351)
                      +|++|+|+||||+...
T Consensus       316 ~ta~e~l~Hp~~~~~~  331 (346)
T 4fih_A          316 ATAAELLKHPFLAKAG  331 (346)
T ss_dssp             CCHHHHTTCGGGGGCC
T ss_pred             cCHHHHhcCHhhcCCC
Confidence            9999999999997643

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.10  E-value=3.1e-11  Score=108.60  Aligned_cols=105  Identities=19%  Similarity=0.283  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC--CCcccccCCCCc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHY  177 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~  177 (351)
                      .++.++..+...|++++.|.+.+.-                 +|+..  +.++++|+|||+|+...  ....+.+||+.|
T Consensus       117 ~~~qi~~al~ylH~~~IiHRDiKP~-----------------NILl~--~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y  177 (275)
T 3hyh_A          117 FFQQIISAVEYCHRHKIVHRDLKPE-----------------NLLLD--EHLNVKIADFGLSNIMTDGNFLKTSCGSPNY  177 (275)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCTT-----------------TEEEC--TTCCEEECCSSCC---------------CTT
T ss_pred             HHHHHHHHHHHHHHCCcccccCChH-----------------HeEEC--CCCCEEEeecCCCeecCCCCccCCeeECccc
Confidence            4677777787777777766663322                 22221  35679999999997633  334567999999


Q ss_pred             cCCccccCCC---------------------------------------------hhhHHHHHHHHHHhhccCCCCCCCh
Q psy2006         178 RAPERYMASD---------------------------------------------DEEHRQLFDLISKMLEYEPSERISL  212 (351)
Q Consensus       178 ~~pe~~~~~~---------------------------------------------~~~~~~~~~~i~~~L~~~p~~R~t~  212 (351)
                      +|||.+....                                             ...++++.++|.+||..||.+|+|+
T Consensus       178 ~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~  257 (275)
T 3hyh_A          178 AAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKFLSPGAAGLIKRMLIVNPLNRISI  257 (275)
T ss_dssp             SCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCH
T ss_pred             CChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHccCChhHCcCH
Confidence            9999654321                                             1223668899999999999999999


Q ss_pred             hhhhcCCCCCC
Q psy2006         213 SEALRHPFFDK  223 (351)
Q Consensus       213 ~e~l~~~~~~~  223 (351)
                      +|+|+||||+.
T Consensus       258 ~eil~hpw~k~  268 (275)
T 3hyh_A          258 HEIMQDDWFKV  268 (275)
T ss_dssp             HHHHHCHHHHT
T ss_pred             HHHHcCccccc
Confidence            99999999953

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.10  E-value=4.4e-11  Score=109.25  Aligned_cols=110  Identities=21%  Similarity=0.333  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC-----CCcccccCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD-----EHHSTIVST  174 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~-----~~~~~~~~~  174 (351)
                      .++.++..|...|.+++.|.+.+.-.                 |+.  -+.+++||+|||+|+...     ....+.+||
T Consensus       137 ~~~qi~~al~ylH~~~IiHRDlKPeN-----------------ILl--~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GT  197 (311)
T 4aw0_A          137 YTAEIVSALEYLHGKGIIHRDLKPEN-----------------ILL--NEDMHIQITDFGTAKVLSPESKQARANSFVGT  197 (311)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSGGG-----------------EEE--CTTSCEEECCCTTCEECCTTTTCCCBCCCCSC
T ss_pred             HHHHHHHHHHHHHHCCCccCCCCHHH-----------------eEE--cCCCCEEEEEcCCceecCCCCCcccccCcccC
Confidence            35667777777766666555533322                 221  135679999999997532     224567999


Q ss_pred             CCccCCccccCC--------------------------------------------ChhhHHHHHHHHHHhhccCCCCCC
Q psy2006         175 RHYRAPERYMAS--------------------------------------------DDEEHRQLFDLISKMLEYEPSERI  210 (351)
Q Consensus       175 ~~~~~pe~~~~~--------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~  210 (351)
                      +.|+|||.+...                                            +...++++.+||.+||.+||.+|+
T Consensus       198 p~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~~R~  277 (311)
T 4aw0_A          198 AQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRL  277 (311)
T ss_dssp             GGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCSSGGGST
T ss_pred             cccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHHHccCCHhHCc
Confidence            999999954321                                            122346788999999999999999


Q ss_pred             Chhh------hhcCCCCCCCCchh
Q psy2006         211 SLSE------ALRHPFFDKLPSSV  228 (351)
Q Consensus       211 t~~e------~l~~~~~~~~~~~~  228 (351)
                      |++|      +++||||+.+.|..
T Consensus       278 t~~e~~~~~~i~~Hp~F~~idw~~  301 (311)
T 4aw0_A          278 GCEEMEGYGPLKAHPFFESVTWEN  301 (311)
T ss_dssp             TSGGGTCHHHHHTSGGGTTCCCTT
T ss_pred             ChHHHcCCHHHHCCCCcCCCCHHH
Confidence            9988      47899998887653

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.10  E-value=6e-11  Score=108.21  Aligned_cols=109  Identities=18%  Similarity=0.244  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC---CCCcccccCCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRH  176 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~---~~~~~~~~~~~~  176 (351)
                      .++.++..|...|.+++.|.+.+.-                 +|+.  -+.++++|+|||+|+..   .....+.+||+.
T Consensus       131 ~~~qi~~aL~ylH~~~IiHRDlKp~-----------------NILl--~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~  191 (304)
T 3ubd_A          131 YLAELALALDHLHSLGIIYRDLKPE-----------------NILL--DEEGHIKLTDFGLSKESIDHEKKAYSFCGTVE  191 (304)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSSCCGG-----------------GEEE--CTTSCEEEESSEEEEC-----CCCCSCCCCGG
T ss_pred             HHHHHHHHHHHHHHCCCcCCCCCHH-----------------HeEE--cCCCCEEecccccceeccCCCccccccccCcc
Confidence            4667777787777777766663332                 2221  13567999999999753   333456799999


Q ss_pred             ccCCccccCC--------------------------------------------ChhhHHHHHHHHHHhhccCCCCCCCh
Q psy2006         177 YRAPERYMAS--------------------------------------------DDEEHRQLFDLISKMLEYEPSERISL  212 (351)
Q Consensus       177 ~~~pe~~~~~--------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~t~  212 (351)
                      |+|||.+...                                            +...++++.++|.+||..||.+|+|+
T Consensus       192 YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta  271 (304)
T 3ubd_A          192 YMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQFLSPEAQSLLRMLFKRNPANRLGA  271 (304)
T ss_dssp             GCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred             cCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCcCCHHHHHHHHHHcccCHHHCCCC
Confidence            9999955322                                            12234678899999999999999984


Q ss_pred             -----hhhhcCCCCCCCCch
Q psy2006         213 -----SEALRHPFFDKLPSS  227 (351)
Q Consensus       213 -----~e~l~~~~~~~~~~~  227 (351)
                           +|+++||||+...|.
T Consensus       272 ~~~~~~eil~Hp~f~~idw~  291 (304)
T 3ubd_A          272 GPDGVEEIKRHSFFSTIDWN  291 (304)
T ss_dssp             STTTHHHHHTSGGGTTCCHH
T ss_pred             CcCCHHHHHcCccccCCCHH
Confidence                 799999999988764

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.09  E-value=7.9e-11  Score=111.98  Aligned_cols=107  Identities=19%  Similarity=0.281  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC---CCcccccCCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRH  176 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~---~~~~~~~~~~~  176 (351)
                      .++.++..|...|.+++.|.+.+.                 .+|+.  -..+++||+|||+|+...   ....+.+||+.
T Consensus       252 ~~~qil~aL~ylH~~~IiHRDiKp-----------------~NILl--~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~  312 (423)
T 4fie_A          252 VCLAVLQALSVLHAQGVIHRDIKS-----------------DSILL--THDGRVKLSDFGFCAQVSKEVPRRKSLVGTPY  312 (423)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCST-----------------TTEEE--CTTCCEEECCCTTCEECCSSCCCBCCCEECTT
T ss_pred             HHHHHHHHHHHHHHCCeecccCCH-----------------HHEEE--cCCCCEEEecCccceECCCCCccccccccCcC
Confidence            356677777777666665555322                 22222  135679999999997632   33456899999


Q ss_pred             ccCCccccCCC-----------------------------------------------hhhHHHHHHHHHHhhccCCCCC
Q psy2006         177 YRAPERYMASD-----------------------------------------------DEEHRQLFDLISKMLEYEPSER  209 (351)
Q Consensus       177 ~~~pe~~~~~~-----------------------------------------------~~~~~~~~~~i~~~L~~~p~~R  209 (351)
                      |+|||.+....                                               ...++++.+||.+||.+||.+|
T Consensus       313 YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R  392 (423)
T 4fie_A          313 WMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRLKNLHKVSPSLKGFLDRLLVRDPAQR  392 (423)
T ss_dssp             TCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSSCHHHHHHHHHHSCSSTTTS
T ss_pred             cCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCcccccCCHHHHHHHHHHcCCChhHC
Confidence            99999654220                                               1224678899999999999999


Q ss_pred             CChhhhhcCCCCCCCC
Q psy2006         210 ISLSEALRHPFFDKLP  225 (351)
Q Consensus       210 ~t~~e~l~~~~~~~~~  225 (351)
                      +|++|+|+||||+...
T Consensus       393 ~ta~ell~Hp~~~~~~  408 (423)
T 4fie_A          393 ATAAELLKHPFLAKAG  408 (423)
T ss_dssp             CCHHHHTTCGGGGGCC
T ss_pred             cCHHHHhcCHHhcCCC
Confidence            9999999999997643

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.09  E-value=9.4e-11  Score=106.85  Aligned_cols=109  Identities=17%  Similarity=0.250  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC------------
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH------------  167 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~------------  167 (351)
                      .++.++..|...|.+++.|.+.+.-.                 |+..  +.+++||+|||+|+..+..            
T Consensus       123 i~~qi~~al~ylH~~~IiHRDlKp~N-----------------ILl~--~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~  183 (299)
T 4g31_A          123 IFLQIAEAVEFLHSKGLMHRDLKPSN-----------------IFFT--MDDVVKVGDFGLVTAMDQDEEEQTVLTPMPA  183 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGGG-----------------EEEC--TTCCEEECCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHCcCccccCcHHH-----------------eEEC--CCCcEEEccCccceecCCCcccccccccccc
Confidence            45667777777766666665533322                 2211  2467999999999763221            


Q ss_pred             ---cccccCCCCccCCccccCCC-------------------------------------------hhhHHHHHHHHHHh
Q psy2006         168 ---HSTIVSTRHYRAPERYMASD-------------------------------------------DEEHRQLFDLISKM  201 (351)
Q Consensus       168 ---~~~~~~~~~~~~pe~~~~~~-------------------------------------------~~~~~~~~~~i~~~  201 (351)
                         .++.+||+.|+|||.+....                                           ...++.+.++|.+|
T Consensus       184 ~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~Pf~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~li~~~  263 (299)
T 4g31_A          184 YARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYPFSTQMERVRTLTDVRNLKFPPLFTQKYPCEYVMVQDM  263 (299)
T ss_dssp             --------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTCCCHHHHHHCHHHHHHHHHH
T ss_pred             ccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHccCCCCccHHHHHHHHHhcCCCCCCCcccCHHHHHHHHHH
Confidence               23468999999999654321                                           01123466899999


Q ss_pred             hccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         202 LEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       202 L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      |..||.+|||+.++|+||||+.+.++
T Consensus       264 L~~dP~~Rps~~eil~h~~~~~~~~p  289 (299)
T 4g31_A          264 LSPSPMERPEAINIIENAVFEDLDFP  289 (299)
T ss_dssp             TCSSGGGSCCHHHHHTSGGGCCC---
T ss_pred             cCCChhHCcCHHHHhcCHhhCCCCCC
Confidence            99999999999999999999987654

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.04  E-value=3.6e-10  Score=107.03  Aligned_cols=108  Identities=32%  Similarity=0.495  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC-------CCCccccc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD-------DEHHSTIV  172 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~-------~~~~~~~~  172 (351)
                      .++.++..|...|.+++.|.+.+.-.                 |+.  -..++++|+|||+|+..       .....+.+
T Consensus       163 ~~~qil~al~ylH~~~iiHRDlKP~N-----------------Il~--~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~  223 (398)
T 4b99_A          163 FLYQLLRGLKYMHSAQVIHRDLKPSN-----------------LLV--NENCELKIGDFGMARGLCTSPAEHQYFMTEYV  223 (398)
T ss_dssp             HHHHHHHHHHHHHHTTCBCCCCCGGG-----------------EEE--CTTCCEEECCCTTCBCC-------CCCCCSSC
T ss_pred             HHHHHHHHHHHHHHCcCcCCCcCccc-----------------ccc--CCCCCEEEeecceeeecccCccccccccccce
Confidence            46777888877777777666533332                 211  13567999999999752       22345679


Q ss_pred             CCCCccCCccccCCC-----------------------------------------------------------------
Q psy2006         173 STRHYRAPERYMASD-----------------------------------------------------------------  187 (351)
Q Consensus       173 ~~~~~~~pe~~~~~~-----------------------------------------------------------------  187 (351)
                      ||+.|+|||.+....                                                                 
T Consensus       224 GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~  303 (398)
T 4b99_A          224 ATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLP  303 (398)
T ss_dssp             CCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSC
T ss_pred             eChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCC
Confidence            999999999654210                                                                 


Q ss_pred             -----------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         188 -----------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       188 -----------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                                 ...++++.+||.+||.+||.+|+|++|+|+||||+....
T Consensus       304 ~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~  353 (398)
T 4b99_A          304 PRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHD  353 (398)
T ss_dssp             CCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTCC
T ss_pred             CcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCcCCC
Confidence                       011356789999999999999999999999999987654

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.03  E-value=1.9e-10  Score=107.68  Aligned_cols=34  Identities=41%  Similarity=0.868  Sum_probs=30.5

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +++.|||.+||.+||.+|+|++|+|+||||++++
T Consensus       327 ~~a~DLl~~lL~~dP~~R~ta~eaL~Hp~f~~i~  360 (361)
T 4f9c_A          327 DEAYDLLDKLLDLNPASRITAEEALLHPFFKDMS  360 (361)
T ss_dssp             HHHHHHHHHHTCSCTTTSCCHHHHHTSGGGTTC-
T ss_pred             HHHHHHHHHHCcCChhHCcCHHHHhcCcccCCCC
Confidence            4577999999999999999999999999998754

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=98.98  E-value=8.1e-11  Score=109.27  Aligned_cols=105  Identities=19%  Similarity=0.253  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC---cccccCCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH---HSTIVSTRH  176 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~---~~~~~~~~~  176 (351)
                      .++.++..|...|.+++.|.+.+.-                 +|+.  -+.+++||+|||+|+.....   .++.+||+.
T Consensus       130 ~~~qi~~aL~ylH~~~IiHRDlKp~-----------------NILl--~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~  190 (350)
T 4b9d_A          130 WFVQICLALKHVHDRKILHRDIKSQ-----------------NIFL--TKDGTVQLGDFGIARVLNSTVELARACIGTPY  190 (350)
T ss_dssp             HHHHHHHHHHHHHHTTCEETTCCGG-----------------GEEE--CTTCCEEECSTTEESCCCHHHHHHHHHHSCCT
T ss_pred             HHHHHHHHHHHHHHCCeeeccCCHH-----------------HEEE--CCCCCEEEcccccceeecCCcccccccCCCcc
Confidence            3566777777776666655553332                 2221  13567999999999875433   345789999


Q ss_pred             ccCCccccCC---------------------------------------------ChhhHHHHHHHHHHhhccCCCCCCC
Q psy2006         177 YRAPERYMAS---------------------------------------------DDEEHRQLFDLISKMLEYEPSERIS  211 (351)
Q Consensus       177 ~~~pe~~~~~---------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~t  211 (351)
                      |+|||.+...                                             ....++++.+||.+||.+||.+|+|
T Consensus       191 YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s  270 (350)
T 4b9d_A          191 YLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFPPVSLHYSYDLRSLVSQLFKRNPRDRPS  270 (350)
T ss_dssp             TCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred             ccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHccCChhHCcC
Confidence            9999965432                                             1122467889999999999999999


Q ss_pred             hhhhhcCCCCCC
Q psy2006         212 LSEALRHPFFDK  223 (351)
Q Consensus       212 ~~e~l~~~~~~~  223 (351)
                      ++|+|+||||+.
T Consensus       271 ~~e~l~hp~~~~  282 (350)
T 4b9d_A          271 VNSILEKGFIAK  282 (350)
T ss_dssp             HHHHHTSHHHHT
T ss_pred             HHHHhcCHHhhc
Confidence            999999999964

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=98.96  E-value=3.6e-10  Score=112.08  Aligned_cols=112  Identities=26%  Similarity=0.382  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCC--CcccccCCCCcc
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYR  178 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~--~~~~~~~~~~~~  178 (351)
                      ++.++..|...|.+++.|.+...                 .+++...-..++++|+|||+|+....  .....+||+.|+
T Consensus       261 ~~qi~~al~ylH~~~iiHRDlKp-----------------~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~  323 (573)
T 3uto_A          261 MRQVCKGLCHMHENNYVHLDLKP-----------------ENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFA  323 (573)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCCG-----------------GGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGC
T ss_pred             HHHHHHHHHHHHHCCeeeccCCh-----------------hhccccCCCCCCEEEeeccceeEccCCCceeeeEECcccc
Confidence            55666666666555554444221                 23333222356799999999987433  345678999999


Q ss_pred             CCccccCCC------------------------------------------------hhhHHHHHHHHHHhhccCCCCCC
Q psy2006         179 APERYMASD------------------------------------------------DEEHRQLFDLISKMLEYEPSERI  210 (351)
Q Consensus       179 ~pe~~~~~~------------------------------------------------~~~~~~~~~~i~~~L~~~p~~R~  210 (351)
                      |||.+....                                                ...++++.+||.+||.+||.+|+
T Consensus       324 APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~dli~~~L~~dp~~R~  403 (573)
T 3uto_A          324 APEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTRM  403 (573)
T ss_dssp             CHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSCHHHHHHHHTTSCSSGGGSC
T ss_pred             CHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHCc
Confidence            999654320                                                11246788999999999999999


Q ss_pred             ChhhhhcCCCCCCCCchhh
Q psy2006         211 SLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       211 t~~e~l~~~~~~~~~~~~~  229 (351)
                      |+.|+|+||||+...+...
T Consensus       404 t~~e~l~Hpw~~~~~~~~~  422 (573)
T 3uto_A          404 TIHQALEHPWLTPGNAPGR  422 (573)
T ss_dssp             CHHHHHHSTTTSCCCCTTT
T ss_pred             CHHHHhcCcCcCCCCCCCc
Confidence            9999999999987665443

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=98.91  E-value=1.4e-08  Score=90.14  Aligned_cols=78  Identities=12%  Similarity=0.039  Sum_probs=61.9

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      .+|.|+.+.||++.  ..++.+++|+..... .....+.+|+++|+.|.. +..    |.++++++...+..|+|||++ 
T Consensus        21 ~~~g~s~~~v~~~~--~~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~-~~~----vP~v~~~~~~~~~~~lv~e~i~   93 (263)
T 3tm0_A           21 DTEGMSPAKVYKLV--GENENLYLKMTDSRYKGTTYDVEREKDMMLWLEG-KLP----VPKVLHFERHDGWSNLLMSEAD   93 (263)
T ss_dssp             CCSCCSSSEEEEEE--CSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTT-TSC----CCCEEEEEEETTEEEEEEECCS
T ss_pred             eccCCCCCeEEEEE--CCCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhc-CCC----CCeEEEEEecCCceEEEEEecC
Confidence            46778889999998  447899999997521 223468899999999964 322    889999999999999999999 


Q ss_pred             CCCHHHH
Q psy2006          81 GLSVFDF   87 (351)
Q Consensus        81 g~sL~~~   87 (351)
                      |.+|.+.
T Consensus        94 G~~l~~~  100 (263)
T 3tm0_A           94 GVLCSEE  100 (263)
T ss_dssp             SEEHHHH
T ss_pred             Ceehhhc
Confidence            7788765

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=98.87  E-value=1.4e-09  Score=108.52  Aligned_cols=111  Identities=20%  Similarity=0.212  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC-CCCcccccCCCCcc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD-DEHHSTIVSTRHYR  178 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~-~~~~~~~~~~~~~~  178 (351)
                      .++.++..|...|.+++.|.+...-                 +|+.  -..++++|+|||+|+.. .....+.+||+.|+
T Consensus       297 y~~qIl~aL~yLH~~gIiHRDLKPe-----------------NILl--d~~G~vKL~DFGlA~~~~~~~~~t~~GTp~Ym  357 (689)
T 3v5w_A          297 YAAEIILGLEHMHNRFVVYRDLKPA-----------------NILL--DEHGHVRISDLGLACDFSKKKPHASVGTHGYM  357 (689)
T ss_dssp             HHHHHHHHHHHHHTTTEECCCCSGG-----------------GEEE--CTTSCEEECCCTTCEECSSCCCCSCCSCGGGC
T ss_pred             HHHHHHHHHHHHHHCCccccCCchH-----------------HeEE--eCCCCEEecccceeeecCCCCCCCccCCcCcc
Confidence            3566777777766666655543222                 2222  13578999999999764 44456689999999


Q ss_pred             CCccccC-C-----------------------------------------------ChhhHHHHHHHHHHhhccCCCCCC
Q psy2006         179 APERYMA-S-----------------------------------------------DDEEHRQLFDLISKMLEYEPSERI  210 (351)
Q Consensus       179 ~pe~~~~-~-----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~  210 (351)
                      |||.+.. .                                               +...++++.+||.+||..||.+|+
T Consensus       358 APEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl  437 (689)
T 3v5w_A          358 APEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRL  437 (689)
T ss_dssp             CHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCGGGCT
T ss_pred             CHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCCccCCHHHHHHHHHHccCCHhHCC
Confidence            9997642 1                                               111236688999999999999999


Q ss_pred             C-----hhhhhcCCCCCCCCchhh
Q psy2006         211 S-----LSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       211 t-----~~e~l~~~~~~~~~~~~~  229 (351)
                      +     ++|+++||||+.+.|..-
T Consensus       438 ~~~~~ga~ei~~HpfF~~idW~~l  461 (689)
T 3v5w_A          438 GCLGRGAQEVKESPFFRSLDWQMV  461 (689)
T ss_dssp             TCSSSTHHHHTTSGGGTTCCHHHH
T ss_pred             CCCCCCHHHHhcCccccCCCHHHH
Confidence            8     799999999999888543

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=98.85  E-value=2.4e-09  Score=98.89  Aligned_cols=107  Identities=21%  Similarity=0.159  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC-CeEEeecCCcccCCCC--------ccc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC-DIRLIDFGSATFDDEH--------HST  170 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~-ni~l~Dfg~s~~~~~~--------~~~  170 (351)
                      .++.++..|...|.+++.|.+.+.-                 +|+. + ..+ .+||+|||+|+.....        ...
T Consensus       155 ~~~qi~~aL~ylH~~~IiHRDlKp~-----------------NILl-~-~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~  215 (336)
T 4g3f_A          155 YLGQALEGLEYLHTRRILHGDVKAD-----------------NVLL-S-SDGSRAALCDFGHALCLQPDGLGKSLLTGDY  215 (336)
T ss_dssp             HHHHHHHHHHHHHTTTEECSCCCGG-----------------GEEE-C-TTSCCEEECCCTTCEEC------------CC
T ss_pred             HHHHHHHHHHHHHHCCceecccCHH-----------------HEEE-e-CCCCEEEEeeCCCCeEccCCCcccceecCCc
Confidence            3566777777776666655553322                 2221 1 233 4999999999763221        123


Q ss_pred             ccCCCCccCCccccCC-----------------------------------------------ChhhHHHHHHHHHHhhc
Q psy2006         171 IVSTRHYRAPERYMAS-----------------------------------------------DDEEHRQLFDLISKMLE  203 (351)
Q Consensus       171 ~~~~~~~~~pe~~~~~-----------------------------------------------~~~~~~~~~~~i~~~L~  203 (351)
                      .+||+.|+|||.+...                                               ....++++.++|.+||.
T Consensus       216 ~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~  295 (336)
T 4g3f_A          216 IPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPPPIREIPPSCAPLTAQAIQEGLR  295 (336)
T ss_dssp             CCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCCGGGGSCTTSCHHHHHHHHHHTC
T ss_pred             cccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCCCchhcCccCCHHHHHHHHHHcc
Confidence            5799999999955432                                               11234678899999999


Q ss_pred             cCCCCCCChhhh-------------hcCCCCCCCC
Q psy2006         204 YEPSERISLSEA-------------LRHPFFDKLP  225 (351)
Q Consensus       204 ~~p~~R~t~~e~-------------l~~~~~~~~~  225 (351)
                      +||.+|+|+.|+             |+|||+....
T Consensus       296 ~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~~~  330 (336)
T 4g3f_A          296 KEPVHRASAMELRRKVGKALQEVGGLKSPWKGEYK  330 (336)
T ss_dssp             SSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSSCC
T ss_pred             CCHhHCcCHHHHHHHHHHHHhhhhhccCCCcCCCC
Confidence            999999999996             5789987654

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=98.75  E-value=1.4e-08  Score=97.08  Aligned_cols=34  Identities=29%  Similarity=0.682  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +++.+||.+||.+||.+|+|+.|+|+||||+...
T Consensus       383 ~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~~  416 (429)
T 3kvw_A          383 PLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRRL  416 (429)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC---
T ss_pred             HHHHHHHHHHCCCChhhCCCHHHHhCChhhccCC
Confidence            4578999999999999999999999999997643

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=98.71  E-value=9.8e-09  Score=98.88  Aligned_cols=38  Identities=32%  Similarity=0.711  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      ++++.+||.+||.+||.+|+|++|+|+||||+...+..
T Consensus       370 s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f~~~~~~~  407 (458)
T 3rp9_A          370 SADAIHLLKRMLVFNPNKRITINECLAHPFFKEVRIAE  407 (458)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTCCGG
T ss_pred             CHHHHHHHHHHhccCccccCCHHHHhcCHhhhhcCCCc
Confidence            45678999999999999999999999999999876543

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.68  E-value=5.8e-08  Score=85.60  Aligned_cols=75  Identities=13%  Similarity=0.081  Sum_probs=56.8

Q ss_pred             ccc-CcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           3 SLN-CVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         3 ~iG-~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      .++ .|..+.||++.. .+|+.+++|+....  ....+.+|+.+++.+.+.+-.    |.+++.++...+..++|||++ 
T Consensus        26 ~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~--~~~~~~~E~~~l~~l~~~~~~----vP~~~~~~~~~~~~~~v~e~i~   98 (264)
T 1nd4_A           26 QQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG--ALNELQDEAARLSWLATTGVP----CAAVLDVVTEAGRDWLLLGEVP   98 (264)
T ss_dssp             ECSCTTSSCEEEEEEC-TTSCCEEEEEECSC--TTSCHHHHHHHHHHHHTTTCC----BCCEEEEEECSSCEEEEEECCS
T ss_pred             ecccCCCCceEEEEec-CCCCeEEEEeCCcc--cchhhhHHHHHHHHHHhCCCC----CCeEEEeccCCCCCEEEEEecC
Confidence            455 556699999964 45778999998653  235577899999999754322    667888888888999999999 


Q ss_pred             CCCH
Q psy2006          81 GLSV   84 (351)
Q Consensus        81 g~sL   84 (351)
                      |.+|
T Consensus        99 G~~l  102 (264)
T 1nd4_A           99 GQDL  102 (264)
T ss_dssp             SEET
T ss_pred             Cccc
Confidence            6676

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=98.67  E-value=2.2e-08  Score=96.70  Aligned_cols=35  Identities=43%  Similarity=0.693  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      ++++.+||.+||.+||.+|+|++|+|+||||+...
T Consensus       329 s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~~~~~  363 (464)
T 3ttj_A          329 ASQARDLLSKMLVIDPAKRISVDDALQHPYINVWY  363 (464)
T ss_dssp             HHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGC
T ss_pred             CHHHHHHHHHHcCCChhhCCCHHHHhcChhhhhcc
Confidence            45688999999999999999999999999997533

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=98.67  E-value=1.9e-08  Score=94.51  Aligned_cols=33  Identities=45%  Similarity=0.738  Sum_probs=30.0

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                      +++.+||.+||.+||.+|||+.++|+||||+..
T Consensus       347 ~~~~dli~~mL~~dP~~Rpta~e~L~hp~f~~~  379 (382)
T 2vx3_A          347 LKFKDLILRMLDYDPKTRIQPYYALQHSFFKKT  379 (382)
T ss_dssp             HHHHHHHHHHTCSCTTTSCCHHHHTTSGGGCC-
T ss_pred             HHHHHHHHHhcCCChhhCCCHHHHhcCcccccC
Confidence            367899999999999999999999999999764

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.66  E-value=5.6e-08  Score=90.50  Aligned_cols=100  Identities=13%  Similarity=0.092  Sum_probs=65.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEec--chh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC---CeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIK--NVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH---GHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~--~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~---~~~~   74 (351)
                      ++|+.|.++.||+...  .++.+++|+..  ...  .....+.+|.++|+.|...+..    |.+++.++...   +..|
T Consensus        44 ~~l~~G~sn~~y~v~~--~~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vp----vP~~~~~~~~~~~~g~~~  117 (359)
T 3dxp_A           44 EQFKGGQSNPTFKLVT--PGQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVP----VAKMYALCEDESVIGRAF  117 (359)
T ss_dssp             EECCC-CCSCEEEEEC--SSCEEEEECCCC----------CHHHHHHHHHHHTTSSSC----CCCEEEEECCTTTTSSCE
T ss_pred             EEcCCcccceEEEEEE--CCceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCC----CCcEEEECCCCCccCCeE
Confidence            5789999999999884  45778899886  322  2235678899999999864433    88888888776   4689


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHh
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYA  111 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~  111 (351)
                      +|||++ |..+.+..    ...++......++.++...
T Consensus       118 ~vme~v~G~~l~~~~----~~~l~~~~~~~~~~~l~~~  151 (359)
T 3dxp_A          118 YIMEFVSGRVLWDQS----LPGMSPAERTAIYDEMNRV  151 (359)
T ss_dssp             EEEECCCCBCCCCTT----CTTCCHHHHHHHHHHHHHH
T ss_pred             EEEEecCCeecCCCc----cccCCHHHHHHHHHHHHHH
Confidence            999999 65664311    1124555544444444433

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=98.65  E-value=3.5e-08  Score=91.68  Aligned_cols=74  Identities=38%  Similarity=0.702  Sum_probs=59.4

Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCC----------------------------hh-----------
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD----------------------------DE-----------  189 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~----------------------------~~-----------  189 (351)
                      +.+.++|+|||+|+..........||+.|+|||.+....                            ..           
T Consensus       197 ~~~~~kl~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~  276 (360)
T 3llt_A          197 KSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHEHMEHLAMMESIIQ  276 (360)
T ss_dssp             SCCCEEECCCTTCEETTSCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHTC
T ss_pred             CCCCEEEEeccCceecCCCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHhcC
Confidence            467799999999988766677788999999999543210                            00           


Q ss_pred             ---------------------------------------------------hHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         190 ---------------------------------------------------EHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       190 ---------------------------------------------------~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                                                                         ..+.+.++|.+||.+||.+|||+.++|+|
T Consensus       277 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~h  356 (360)
T 3llt_A          277 PIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKH  356 (360)
T ss_dssp             CCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTS
T ss_pred             CCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcC
Confidence                                                               01456699999999999999999999999


Q ss_pred             CCCC
Q psy2006         219 PFFD  222 (351)
Q Consensus       219 ~~~~  222 (351)
                      |||+
T Consensus       357 p~f~  360 (360)
T 3llt_A          357 KFLE  360 (360)
T ss_dssp             GGGC
T ss_pred             cccC
Confidence            9985

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=98.62  E-value=2.1e-08  Score=92.41  Aligned_cols=76  Identities=17%  Similarity=0.279  Sum_probs=59.7

Q ss_pred             CCCeEEeecCCcccC--CCCcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~--~~~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      .++++|+|||+|+..  .......+||+.|+|||.+....                                        
T Consensus       150 ~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~  229 (328)
T 3fe3_A          150 DMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRG  229 (328)
T ss_dssp             TSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC
T ss_pred             CCCEEEeeccCceecCCCCccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhC
Confidence            567999999999753  33445678999999999654321                                        


Q ss_pred             -----hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 -----DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 -----~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                           ...++++.++|.+||..||.+|||++++++||||+...
T Consensus       230 ~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~~  272 (328)
T 3fe3_A          230 KYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGH  272 (328)
T ss_dssp             CCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTCTTTTTTC
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcCHhhcCCC
Confidence                 11235678999999999999999999999999997643

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=98.62  E-value=5.8e-08  Score=89.57  Aligned_cols=81  Identities=57%  Similarity=0.966  Sum_probs=64.4

Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCC----------------------------h------------
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD----------------------------D------------  188 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~----------------------------~------------  188 (351)
                      +...++|+|||+|+..........||+.|++||.+....                            .            
T Consensus       177 ~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~  256 (355)
T 2eu9_A          177 KNTSIRVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREHLVMMEKILG  256 (355)
T ss_dssp             SCCCEEECCCTTCEETTSCCCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred             CCCcEEEeecCccccccccccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcC
Confidence            467799999999988766667788999999999543210                            0            


Q ss_pred             ------------------------------------------------hhHHHHHHHHHHhhccCCCCCCChhhhhcCCC
Q psy2006         189 ------------------------------------------------EEHRQLFDLISKMLEYEPSERISLSEALRHPF  220 (351)
Q Consensus       189 ------------------------------------------------~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~  220 (351)
                                                                      ..+.++.++|.+||.+||.+|||+.++|+|||
T Consensus       257 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~  336 (355)
T 2eu9_A          257 PIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPF  336 (355)
T ss_dssp             CCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGG
T ss_pred             CCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcChh
Confidence                                                            01236779999999999999999999999999


Q ss_pred             CCCCCchhh
Q psy2006         221 FDKLPSSVR  229 (351)
Q Consensus       221 ~~~~~~~~~  229 (351)
                      |+...+..+
T Consensus       337 f~~~~~~~~  345 (355)
T 2eu9_A          337 FAGLTPEER  345 (355)
T ss_dssp             GGGCCHHHH
T ss_pred             hcCCChhhc
Confidence            988765443

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=98.60  E-value=3.2e-08  Score=92.62  Aligned_cols=78  Identities=37%  Similarity=0.683  Sum_probs=57.1

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC-----------------------------C-------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS-----------------------------D-------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~-----------------------------~-------------  187 (351)
                      .++++|+|||+++..........+|+.|++||.+...                             .             
T Consensus       180 ~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~  259 (371)
T 4exu_A          180 DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTG  259 (371)
T ss_dssp             TCCEEECSTTCC--------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEecCcccccccCcCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhC
Confidence            4679999999998877777778899999999965431                             0             


Q ss_pred             ----------------------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         188 ----------------------------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 ----------------------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                                                        ...++++.++|.+||.+||.+|+|+.++|+||||+.....
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  333 (371)
T 4exu_A          260 VPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDP  333 (371)
T ss_dssp             CCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCCG
T ss_pred             CCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCcccccCCCc
Confidence                                              0114578899999999999999999999999999876543

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=98.60  E-value=2.1e-08  Score=95.89  Aligned_cols=37  Identities=27%  Similarity=0.681  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      ++++.+||.+||.+||.+|+|++++|+||||+...+.
T Consensus       335 s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~  371 (432)
T 3n9x_A          335 SDDGINLLESMLKFNPNKRITIDQALDHPYLKDVRKK  371 (432)
T ss_dssp             CHHHHHHHHHHSCSSTTTSCCHHHHHTCGGGTTTCCT
T ss_pred             CHHHHHHHHHHhcCCcccCCCHHHHhcChhhhhccCc
Confidence            4567899999999999999999999999999887654

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=98.58  E-value=4.5e-08  Score=92.66  Aligned_cols=36  Identities=31%  Similarity=0.647  Sum_probs=31.8

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +.+.+||.+||.+||.+|+|++++|+||||...+..
T Consensus       308 ~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f~~~~~~  343 (405)
T 3rgf_A          308 SKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLP  343 (405)
T ss_dssp             SHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTSSSCC
T ss_pred             HHHHHHHHHHccCCcccCCCHHHHhcChhhccCCCC
Confidence            456789999999999999999999999999876543

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=98.57  E-value=3.1e-08  Score=90.83  Aligned_cols=80  Identities=24%  Similarity=0.382  Sum_probs=65.0

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC-------------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS-------------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~-------------------------------------------  186 (351)
                      .++++|+|||+|+.........+||+.|+|||.+...                                           
T Consensus       142 ~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~  221 (318)
T 1fot_A          142 NGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELR  221 (318)
T ss_dssp             TSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCC
T ss_pred             CCCEEEeecCcceecCCccccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCC
Confidence            5679999999998876666678999999999955322                                           


Q ss_pred             -ChhhHHHHHHHHHHhhccCCCCCC-----ChhhhhcCCCCCCCCchhh
Q psy2006         187 -DDEEHRQLFDLISKMLEYEPSERI-----SLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       187 -~~~~~~~~~~~i~~~L~~~p~~R~-----t~~e~l~~~~~~~~~~~~~  229 (351)
                       +...++++.++|.+||..||.+|+     +++++++||||+...|...
T Consensus       222 ~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~~~~~~~  270 (318)
T 1fot_A          222 FPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEVVWEKL  270 (318)
T ss_dssp             CCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSCCHHHH
T ss_pred             CCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCccccCCCHHHH
Confidence             011235688999999999999999     8999999999998887543

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=98.57  E-value=3.1e-08  Score=90.37  Aligned_cols=35  Identities=40%  Similarity=0.811  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      +++.++|.+||.+||.+|||++++|+||||+...+
T Consensus       275 ~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  309 (311)
T 3niz_A          275 QEGIDLLSNMLCFDPNKRISARDAMNHPYFKDLDP  309 (311)
T ss_dssp             HHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTSCT
T ss_pred             HHHHHHHHHHcCCChhHCCCHHHHhcCcccccCCc
Confidence            46779999999999999999999999999987653

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=98.57  E-value=2.4e-08  Score=93.99  Aligned_cols=36  Identities=36%  Similarity=0.803  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      ++++.++|.+||.+||.+|+|++++|+||||+....
T Consensus       302 ~~~~~dll~~~L~~dP~~R~t~~e~l~Hp~~~~~~~  337 (388)
T 3oz6_A          302 NEEALDLLDKLLQFNPNKRISANDALKHPFVSIFHN  337 (388)
T ss_dssp             CHHHHHHHHHHCCSSGGGSCCHHHHTTSTTTTTTCC
T ss_pred             CHHHHHHHHHhhccCcccCCCHHHHhCCHHHHHhcC
Confidence            346889999999999999999999999999987553

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=98.57  E-value=8.6e-08  Score=87.75  Aligned_cols=76  Identities=67%  Similarity=1.103  Sum_probs=60.8

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCC----------------------------h-------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD----------------------------D-------------  188 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~----------------------------~-------------  188 (351)
                      .++++|+|||+++..........||+.|++||.+....                            .             
T Consensus       173 ~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~  252 (339)
T 1z57_A          173 NPDIKVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEHLAMMERILGP  252 (339)
T ss_dssp             CCCEEECCCSSCEETTSCCCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHHHHHHHHHHCS
T ss_pred             CCCceEeeCcccccCccccccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCC
Confidence            55699999999988776667788999999999543210                            0             


Q ss_pred             -----------------------------------------------hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         189 -----------------------------------------------EEHRQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       189 -----------------------------------------------~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                                                                     ...+++.++|.+||..||.+|||+.|+++||||
T Consensus       253 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f  332 (339)
T 1z57_A          253 LPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFF  332 (339)
T ss_dssp             CCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGG
T ss_pred             CCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCHHH
Confidence                                                           113557799999999999999999999999999


Q ss_pred             CCCC
Q psy2006         222 DKLP  225 (351)
Q Consensus       222 ~~~~  225 (351)
                      +...
T Consensus       333 ~~~~  336 (339)
T 1z57_A          333 DLLK  336 (339)
T ss_dssp             GGGG
T ss_pred             HHHh
Confidence            7643

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=98.56  E-value=1e-07  Score=91.59  Aligned_cols=75  Identities=33%  Similarity=0.499  Sum_probs=59.0

Q ss_pred             CCCCeEEeecCCcccCCCC---cccccCCCCccCCccccCCC--------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPERYMASD--------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~---~~~~~~~~~~~~pe~~~~~~--------------------------------------  187 (351)
                      +.+.++|+|||+|+.....   .....||+.|+|||.+....                                      
T Consensus       148 ~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~  227 (444)
T 3soa_A          148 KGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKA  227 (444)
T ss_dssp             TTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHH
T ss_pred             CCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHh
Confidence            4577999999999764332   34578999999999543210                                      


Q ss_pred             ----------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 ----------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 ----------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                                ...++++.++|.+||..||.+|||+.++|+||||..
T Consensus       228 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~~~~  273 (444)
T 3soa_A          228 GAYDFPSPEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWISH  273 (444)
T ss_dssp             TCCCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSCTTHH
T ss_pred             CCCCCCccccccCCHHHHHHHHHHcCCChhHCCCHHHHhcCccccC
Confidence                      122467889999999999999999999999999964

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=98.55  E-value=3.6e-08  Score=92.28  Aligned_cols=78  Identities=32%  Similarity=0.612  Sum_probs=50.1

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC-----------------------------Ch------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS-----------------------------DD------------  188 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~-----------------------------~~------------  188 (351)
                      .++++|+|||+|+..........+|+.|++||.+...                             ..            
T Consensus       168 ~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g  247 (367)
T 2fst_X          168 DCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVG  247 (367)
T ss_dssp             TCCEEECC---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHC
T ss_pred             CCCEEEeeccccccccccCCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhC
Confidence            4679999999998876666778899999999955321                             00            


Q ss_pred             -----------------------------------hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         189 -----------------------------------EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       189 -----------------------------------~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                                                         ..++++.++|.+||.+||.+|+|+.++|.||||+.....
T Consensus       248 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~~~~~  321 (367)
T 2fst_X          248 TPGAELLKKISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDP  321 (367)
T ss_dssp             SCCHHHHTTCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCG
T ss_pred             CCCHHHHHHhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcChhhhhccCC
Confidence                                               012457899999999999999999999999999876543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=98.54  E-value=2.7e-08  Score=90.69  Aligned_cols=74  Identities=24%  Similarity=0.248  Sum_probs=56.2

Q ss_pred             CCCeEEeecCCcccCCCC--cccccCCCCccCCccccCCCh---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPERYMASDD---------------------------------------  188 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~--~~~~~~~~~~~~pe~~~~~~~---------------------------------------  188 (351)
                      .++++|+|||+++.....  .....||+.|++||.+.....                                       
T Consensus       193 ~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~  272 (311)
T 3p1a_A          193 RGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQGSYGTAADVFSLGLTILEVACNMELPHGGEGWQQLRQGYLPPE  272 (311)
T ss_dssp             GGCEEECCCTTCEECC------CCCCCGGGCCGGGGGTCCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHTTTCCCHH
T ss_pred             CCCEEEccceeeeecccCCCCcccCCCccccCHhHhcCCCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHhccCCCcc
Confidence            457999999999764333  334578999999996543210                                       


Q ss_pred             ---hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         189 ---EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       189 ---~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                         ..++++.++|.+||.+||.+|||+.++|+||||++
T Consensus       273 ~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~~~~  310 (311)
T 3p1a_A          273 FTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQ  310 (311)
T ss_dssp             HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGSC
T ss_pred             cccCCCHHHHHHHHHHcCCChhhCcCHHHHHhCccccC
Confidence               11356889999999999999999999999999975

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=98.54  E-value=5.3e-08  Score=92.14  Aligned_cols=81  Identities=25%  Similarity=0.416  Sum_probs=62.6

Q ss_pred             CCCCeEEeecCCccc---CCCCcccccCCCCccCCccccCCC--------------------------------------
Q psy2006         149 RRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPERYMASD--------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~---~~~~~~~~~~~~~~~~pe~~~~~~--------------------------------------  187 (351)
                      ..++++|+|||+|+.   ........+||+.|+|||.+....                                      
T Consensus       188 ~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~  267 (396)
T 4dc2_A          188 SEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTE  267 (396)
T ss_dssp             TTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCH
T ss_pred             CCCCEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhH
Confidence            356799999999975   233455678999999999543210                                      


Q ss_pred             ---------------hhhHHHHHHHHHHhhccCCCCCCCh------hhhhcCCCCCCCCchhh
Q psy2006         188 ---------------DEEHRQLFDLISKMLEYEPSERISL------SEALRHPFFDKLPSSVR  229 (351)
Q Consensus       188 ---------------~~~~~~~~~~i~~~L~~~p~~R~t~------~e~l~~~~~~~~~~~~~  229 (351)
                                     ...+.++.++|.+||..||.+|+++      +++++||||+.+.|..-
T Consensus       268 ~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i~w~~l  330 (396)
T 4dc2_A          268 DYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDMM  330 (396)
T ss_dssp             HHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTTCCHHHH
T ss_pred             HHHHHHHhccccCCCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccCCCHHHH
Confidence                           1123567899999999999999995      79999999999887543

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=98.53  E-value=4.3e-08  Score=91.58  Aligned_cols=76  Identities=32%  Similarity=0.469  Sum_probs=59.6

Q ss_pred             CeEEeecCCcccCC--CCcccccCCCCccCCccccCCC------------------------------------------
Q psy2006         152 DIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASD------------------------------------------  187 (351)
Q Consensus       152 ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~------------------------------------------  187 (351)
                      +++|+|||+|+...  ......+||+.|++||.+....                                          
T Consensus       157 ~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~  236 (361)
T 2yab_A          157 HIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYD  236 (361)
T ss_dssp             CEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCC
T ss_pred             CEEEEecCCceEcCCCCccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCC
Confidence            69999999997643  3345578999999999543210                                          


Q ss_pred             ------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         188 ------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 ------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                            ...++++.+||.+||..||.+|||+.++|+||||....+.
T Consensus       237 ~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~~~  282 (361)
T 2yab_A          237 FDEEFFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDTQ  282 (361)
T ss_dssp             CCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTSCSSHH
T ss_pred             CCchhccCCCHHHHHHHHHHCCCChhHCcCHHHHhcCcCcCCCchh
Confidence                  0123568899999999999999999999999999877653

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=98.52  E-value=1.2e-07  Score=85.20  Aligned_cols=74  Identities=34%  Similarity=0.538  Sum_probs=54.0

Q ss_pred             CCCeEEeecCCcccC--CCCcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~--~~~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      .+.++|+|||++...  ........||+.|++||.+....                                        
T Consensus       163 ~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~  242 (285)
T 3is5_A          163 HSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFKRDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEP  242 (285)
T ss_dssp             TCCEEECCCCCCCC----------CTTGGGCCHHHHTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC
T ss_pred             CCCEEEEeeecceecCCcccCcCcccccCcCChHHhccCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCc
Confidence            466999999999763  23344567999999999543210                                        


Q ss_pred             ------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 ------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 ------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                            ...++++.++|.+||..||.+|||+.++|+||||++
T Consensus       243 ~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~f~~  284 (285)
T 3is5_A          243 NYAVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHHEWFKQ  284 (285)
T ss_dssp             CCCC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGGC
T ss_pred             ccccccCcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHhhc
Confidence                  012356889999999999999999999999999965

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=98.52  E-value=6.4e-08  Score=87.87  Aligned_cols=75  Identities=33%  Similarity=0.476  Sum_probs=56.0

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      .++++|+|||+|+...  .......||+.|++||.+....                                        
T Consensus       156 ~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~  235 (308)
T 3g33_A          156 GGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLI  235 (308)
T ss_dssp             TSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHH
T ss_pred             CCCEEEeeCccccccCCCcccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            4679999999997643  3345578999999999542110                                        


Q ss_pred             -------------------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         188 -------------------------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       188 -------------------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                                                     ...++++.++|.+||.+||.+|+|+.++|+||||+..
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~~  303 (308)
T 3g33_A          236 GLPPEDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKD  303 (308)
T ss_dssp             CCCCTTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC---
T ss_pred             CCCChhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcCccccCC
Confidence                                           0122567789999999999999999999999999764

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=98.51  E-value=8.9e-08  Score=89.52  Aligned_cols=78  Identities=35%  Similarity=0.652  Sum_probs=62.1

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC-----------------------------C-------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS-----------------------------D-------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~-----------------------------~-------------  187 (351)
                      .++++|+|||+|+..........+|+.|++||.+...                             .             
T Consensus       164 ~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g  243 (367)
T 1cm8_A          164 DCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTG  243 (367)
T ss_dssp             TCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEeeecccccccccCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcC
Confidence            4679999999998877777778999999999954321                             0             


Q ss_pred             ----------------------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         188 ----------------------------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 ----------------------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                                                        ...++++.++|.+||.+||.+|+|+.++|+||||+.....
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~~~  317 (367)
T 1cm8_A          244 TPPAEFVQRLQSDEAKNYMKGLPELEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDT  317 (367)
T ss_dssp             CCCHHHHHTCSCHHHHHHHHHSCCCCCCCGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC--
T ss_pred             CCCHHHHHHhhhHHHHHHHHhCCCCCCCCHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhhcCC
Confidence                                              0113567899999999999999999999999999876543

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=98.51  E-value=8.1e-08  Score=88.82  Aligned_cols=80  Identities=24%  Similarity=0.360  Sum_probs=62.7

Q ss_pred             CCCeEEeecCCcccC---CCCcccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      .++++|+|||+|+..   .......+||+.|+|||.+....                                       
T Consensus       141 ~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~  220 (337)
T 1o6l_A          141 DGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILME  220 (337)
T ss_dssp             TSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC
T ss_pred             CCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcC
Confidence            567999999999753   23345678999999999654220                                       


Q ss_pred             -----hhhHHHHHHHHHHhhccCCCCCC-----ChhhhhcCCCCCCCCchhh
Q psy2006         188 -----DEEHRQLFDLISKMLEYEPSERI-----SLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       188 -----~~~~~~~~~~i~~~L~~~p~~R~-----t~~e~l~~~~~~~~~~~~~  229 (351)
                           ...++++.++|.+||..||.+|+     +++++++||||....|...
T Consensus       221 ~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~~~~~~~  272 (337)
T 1o6l_A          221 EIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSINWQDV  272 (337)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCCcCCCCHHHH
Confidence                 11235678999999999999998     8999999999998877543

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=98.50  E-value=3.8e-08  Score=91.01  Aligned_cols=74  Identities=26%  Similarity=0.429  Sum_probs=59.0

Q ss_pred             CCCeEEeecCCcccCCC--CcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~--~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      .++++|+|||+|.....  .....+||+.|+|||.+....                                        
T Consensus       144 ~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~  223 (336)
T 3h4j_B          144 NLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLFKKVNSC  223 (336)
T ss_dssp             TCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCBCCCCSS
T ss_pred             CCCEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHHHHHHcC
Confidence            46799999999976433  345578999999999654321                                        


Q ss_pred             -----hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 -----DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 -----~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                           ...++++.++|.+||..||.+|||++++++||||+.
T Consensus       224 ~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~  264 (336)
T 3h4j_B          224 VYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNV  264 (336)
T ss_dssp             CCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCHHHHT
T ss_pred             CCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhChhhcc
Confidence                 123467889999999999999999999999999964

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=98.49  E-value=1.1e-07  Score=89.67  Aligned_cols=77  Identities=26%  Similarity=0.428  Sum_probs=59.8

Q ss_pred             CCCCeEEeecCCcccCCC--CcccccCCCCccCCccccCCC---------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~--~~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      ..++++|+|||+|+....  ......||+.|++||.+....                                       
T Consensus       186 ~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~  265 (387)
T 1kob_A          186 KASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRC  265 (387)
T ss_dssp             TCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHC
T ss_pred             CCCceEEEecccceecCCCcceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhC
Confidence            356799999999976433  234468999999999543220                                       


Q ss_pred             ---------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 ---------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 ---------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                               ...++++.++|.+||..||.+|+|+.++|+||||....
T Consensus       266 ~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~  312 (387)
T 1kob_A          266 DWEFDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDH  312 (387)
T ss_dssp             CCCCCSSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             CCCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCccccCCc
Confidence                     11246788999999999999999999999999998644

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=98.49  E-value=6.2e-08  Score=87.73  Aligned_cols=76  Identities=26%  Similarity=0.353  Sum_probs=58.4

Q ss_pred             CCCeEEeecCCcccCC---CCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~---~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||+|....   .......||+.|++||.+...                                        
T Consensus       152 ~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~  231 (297)
T 3fxz_A          152 DGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATN  231 (297)
T ss_dssp             TCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHH
T ss_pred             CCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhC
Confidence            4679999999997533   223456899999999954321                                        


Q ss_pred             -------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         187 -------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       187 -------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                             ....++.+.++|.+||..||.+|||+.++++||||+...
T Consensus       232 ~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~~~~~~~  277 (297)
T 3fxz_A          232 GTPELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIAK  277 (297)
T ss_dssp             CSCCCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             CCCCCCCccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhcccC
Confidence                   011235578999999999999999999999999997644

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=98.48  E-value=5.7e-08  Score=90.30  Aligned_cols=79  Identities=22%  Similarity=0.290  Sum_probs=64.5

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCC------------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD------------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~------------------------------------------  187 (351)
                      .++++|+|||+|+.........+||+.|++||.+....                                          
T Consensus       177 ~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~  256 (350)
T 1rdq_E          177 QGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVR  256 (350)
T ss_dssp             TSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC
T ss_pred             CCCEEEcccccceeccCCcccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCC
Confidence            56799999999987766666788999999999653220                                          


Q ss_pred             --hhhHHHHHHHHHHhhccCCCCCCC-----hhhhhcCCCCCCCCchh
Q psy2006         188 --DEEHRQLFDLISKMLEYEPSERIS-----LSEALRHPFFDKLPSSV  228 (351)
Q Consensus       188 --~~~~~~~~~~i~~~L~~~p~~R~t-----~~e~l~~~~~~~~~~~~  228 (351)
                        ...++++.++|.+||..||.+|++     ++++++||||....|..
T Consensus       257 ~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~f~~~~w~~  304 (350)
T 1rdq_E          257 FPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIA  304 (350)
T ss_dssp             CCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHHH
T ss_pred             CCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCcCcCCCCHHH
Confidence              112366889999999999999998     99999999999888753

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=98.48  E-value=5.9e-08  Score=93.11  Aligned_cols=79  Identities=24%  Similarity=0.361  Sum_probs=60.4

Q ss_pred             CCCeEEeecCCcccC---CCCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||+|+..   .......+||+.|+|||.+...                                        
T Consensus       285 ~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~  364 (446)
T 4ejn_A          285 DGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILME  364 (446)
T ss_dssp             SSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC
T ss_pred             CCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhC
Confidence            467999999999752   2234557899999999954321                                        


Q ss_pred             ----ChhhHHHHHHHHHHhhccCCCCCC-----ChhhhhcCCCCCCCCchh
Q psy2006         187 ----DDEEHRQLFDLISKMLEYEPSERI-----SLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       187 ----~~~~~~~~~~~i~~~L~~~p~~R~-----t~~e~l~~~~~~~~~~~~  228 (351)
                          +...++++.++|.+||.+||.+|+     +++++++||||....|..
T Consensus       365 ~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f~~~~~~~  415 (446)
T 4ejn_A          365 EIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGIVWQH  415 (446)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTCCHHH
T ss_pred             CCCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCccccCCCHHH
Confidence                112235688999999999999999     999999999999887653

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=98.48  E-value=2.8e-08  Score=93.27  Aligned_cols=90  Identities=30%  Similarity=0.340  Sum_probs=65.0

Q ss_pred             ccccccccCCCCeEEeecCCcccCC--CCcccccCCCCccCCccccCC----------------------------C---
Q psy2006         141 KKREVRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMAS----------------------------D---  187 (351)
Q Consensus       141 ~~i~h~d~k~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~----------------------------~---  187 (351)
                      .+|+..+-..++++|+|||+++...  .......||+.|++||.+...                            .   
T Consensus       216 ~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~  295 (373)
T 2x4f_A          216 ENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAE  295 (373)
T ss_dssp             GGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHH
T ss_pred             HHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence            3444333334569999999997643  233446799999999954321                            0   


Q ss_pred             -----------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         188 -----------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       188 -----------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                                       ...++++.++|.+||..||.+|||+.++|+||||...+...+.
T Consensus       296 ~~~~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~~~~~~~~  355 (373)
T 2x4f_A          296 TLNNILACRWDLEDEEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSDHKLHSRL  355 (373)
T ss_dssp             HHHHHHHTCCCSCSGGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHCHHHHHHH
T ss_pred             HHHHHHhccCCCChhhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCCCchhhhh
Confidence                             1124678899999999999999999999999999876654443

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=98.47  E-value=6e-08  Score=87.33  Aligned_cols=34  Identities=38%  Similarity=0.667  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +++.++|.+||.+||.+|+|++|+|+||||+...
T Consensus       257 ~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  290 (292)
T 3o0g_A          257 ATGRDLLQNLLKCNPVQRISAEEALQHPYFSDFC  290 (292)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTC-
T ss_pred             hHHHHHHHHHhccChhhCCCHHHHhcCcccccCC
Confidence            4567999999999999999999999999998754

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=98.46  E-value=3.3e-08  Score=90.74  Aligned_cols=76  Identities=26%  Similarity=0.432  Sum_probs=58.9

Q ss_pred             CCCeEEeecCCcccCCC--CcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~--~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      .++++|+|||+++....  ......||+.|++||.+....                                        
T Consensus       140 ~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~  219 (321)
T 1tki_A          140 SSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAE  219 (321)
T ss_dssp             CCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCC
Confidence            57799999999976432  334567999999999543220                                        


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                              ...++++.++|.+||..||.+|||+.++|+||||+...
T Consensus       220 ~~~~~~~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~~  265 (321)
T 1tki_A          220 YTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKI  265 (321)
T ss_dssp             CCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSCG
T ss_pred             CCCChhhhccCCHHHHHHHHHHcCCChhHCcCHHHHhcChhhccCc
Confidence                    01235688999999999999999999999999997643

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=98.46  E-value=1e-07  Score=88.98  Aligned_cols=106  Identities=21%  Similarity=0.311  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC--CCCcccccCCCCcc
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYR  178 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~--~~~~~~~~~~~~~~  178 (351)
                      ++.++..+..-|.+++.|....                 ..+|+...-....++|+|||+|+..  ........||+.|+
T Consensus       122 ~~ql~~~L~~LH~~~ivH~Dlk-----------------p~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~  184 (361)
T 3uc3_A          122 FQQLLSGVSYCHSMQICHRDLK-----------------LENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYI  184 (361)
T ss_dssp             HHHHHHHHHHHHHTTCCSCCCC-----------------GGGEEECSSSSCCEEECCCCCC---------------CTTS
T ss_pred             HHHHHHHHHHHHHCCcccCCCC-----------------HHHEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcC
Confidence            5566666666554444433311                 1333332222334999999999752  33344568999999


Q ss_pred             CCccccCCC---------------------------------------------------hhhHHHHHHHHHHhhccCCC
Q psy2006         179 APERYMASD---------------------------------------------------DEEHRQLFDLISKMLEYEPS  207 (351)
Q Consensus       179 ~pe~~~~~~---------------------------------------------------~~~~~~~~~~i~~~L~~~p~  207 (351)
                      +||.+....                                                   ...++++.++|.+||..||.
T Consensus       185 aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~  264 (361)
T 3uc3_A          185 APEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPDDIRISPECCHLISRIFVADPA  264 (361)
T ss_dssp             CHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCTTSCCCHHHHHHHHHHSCSCTT
T ss_pred             ChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCCcCCCCHHHHHHHHHHccCChh
Confidence            999543210                                                   01236688999999999999


Q ss_pred             CCCChhhhhcCCCCCC
Q psy2006         208 ERISLSEALRHPFFDK  223 (351)
Q Consensus       208 ~R~t~~e~l~~~~~~~  223 (351)
                      +|+|+.++++||||..
T Consensus       265 ~Rps~~ell~hp~f~~  280 (361)
T 3uc3_A          265 TRISIPEIKTHSWFLK  280 (361)
T ss_dssp             TSCCHHHHHTSHHHHT
T ss_pred             HCcCHHHHHhCcchhc
Confidence            9999999999999944

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=98.46  E-value=8.7e-08  Score=89.23  Aligned_cols=35  Identities=23%  Similarity=0.537  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      ++++.++|.+||..||.+|||+.++|+||||+...
T Consensus       307 ~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  341 (373)
T 1q8y_A          307 AKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTL  341 (373)
T ss_dssp             HHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCT
T ss_pred             HHHHHHHHHHHhccCccccCCHHHHhhChhhhccc
Confidence            35677999999999999999999999999998754

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=98.46  E-value=7.3e-08  Score=88.04  Aligned_cols=75  Identities=25%  Similarity=0.429  Sum_probs=56.4

Q ss_pred             CCCeEEeecCCcccCCCC---------------cccccCCCCccCCccccCCC---------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH---------------HSTIVSTRHYRAPERYMASD---------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~---------------~~~~~~~~~~~~pe~~~~~~---------------------------  187 (351)
                      .+.++|+|||+++.....               .....||+.|++||.+....                           
T Consensus       200 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~  279 (332)
T 3qd2_B          200 DDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER  279 (332)
T ss_dssp             TCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             CCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH
Confidence            467999999999764322               23457999999999653221                           


Q ss_pred             ----------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         188 ----------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       188 ----------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                                      ....+++.++|.+||..||.+|||+.++++||||+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~~~~f~~~  332 (332)
T 3qd2_B          280 VRIITDVRNLKFPLLFTQKYPQEHMMVQDMLSPSPTERPEATDIIENAIFENL  332 (332)
T ss_dssp             HHHHHHHHTTCCCHHHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHHSTTCCCC
T ss_pred             HHHHHHhhccCCCcccccCChhHHHHHHHHccCCCCcCCCHHHHhhchhhhcC
Confidence                            0112456789999999999999999999999999763

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=98.45  E-value=1.5e-07  Score=88.75  Aligned_cols=78  Identities=42%  Similarity=0.689  Sum_probs=60.8

Q ss_pred             CCCCeEEeecCCcccC--CCCcccccCCCCccCCccccCCC-----------------------------h---------
Q psy2006         149 RRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPERYMASD-----------------------------D---------  188 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~--~~~~~~~~~~~~~~~pe~~~~~~-----------------------------~---------  188 (351)
                      ..+.++|+|||+|+..  ........+|+.|+|||.+....                             .         
T Consensus       177 ~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~  256 (394)
T 4e7w_A          177 PSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIK  256 (394)
T ss_dssp             TTTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCCcEEEeeCCCcccccCCCCCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            4566999999999753  44455678999999999653210                             0         


Q ss_pred             ------------------------------------hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         189 ------------------------------------EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       189 ------------------------------------~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                                                          ..++++.++|.+||.+||.+|+|+.++|+||||+...+
T Consensus       257 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  330 (394)
T 4e7w_A          257 VLGTPSREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELRT  330 (394)
T ss_dssp             HHCCCCHHHHHHHCGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTTS
T ss_pred             HhCCCCHHHHHhhChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhcc
Confidence                                                02346889999999999999999999999999987654

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=98.45  E-value=7e-08  Score=89.83  Aligned_cols=81  Identities=23%  Similarity=0.363  Sum_probs=58.6

Q ss_pred             CCCCeEEeecCCcccC---CCCcccccCCCCccCCccccCC---------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMAS---------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~---------------------------------------  186 (351)
                      ..++++|+|||+|+..   .......+||+.|+|||.+...                                       
T Consensus       159 ~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~  238 (353)
T 3txo_A          159 HEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILN  238 (353)
T ss_dssp             TTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHc
Confidence            3567999999999763   2334557899999999943210                                       


Q ss_pred             -----ChhhHHHHHHHHHHhhccCCCCCCCh------hhhhcCCCCCCCCchhh
Q psy2006         187 -----DDEEHRQLFDLISKMLEYEPSERISL------SEALRHPFFDKLPSSVR  229 (351)
Q Consensus       187 -----~~~~~~~~~~~i~~~L~~~p~~R~t~------~e~l~~~~~~~~~~~~~  229 (351)
                           +...++++.++|.+||.++|.+|+++      +++++||||+...|...
T Consensus       239 ~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~f~~~~w~~l  292 (353)
T 3txo_A          239 DEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEIDWAQL  292 (353)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGGGTTCCHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCcccCCCHHHH
Confidence                 11234678899999999999999998      89999999999887543

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=98.44  E-value=6.4e-08  Score=89.81  Aligned_cols=80  Identities=25%  Similarity=0.435  Sum_probs=62.8

Q ss_pred             CCCeEEeecCCcccC---CCCcccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      .++++|+|||+|+..   .......+||+.|+|||.+....                                       
T Consensus       154 ~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~  233 (345)
T 1xjd_A          154 DGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMD  233 (345)
T ss_dssp             TSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC
T ss_pred             CCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhC
Confidence            467999999999763   33345678999999999654320                                       


Q ss_pred             -----hhhHHHHHHHHHHhhccCCCCCCChh-hhhcCCCCCCCCchhh
Q psy2006         188 -----DEEHRQLFDLISKMLEYEPSERISLS-EALRHPFFDKLPSSVR  229 (351)
Q Consensus       188 -----~~~~~~~~~~i~~~L~~~p~~R~t~~-e~l~~~~~~~~~~~~~  229 (351)
                           ...++++.++|.+||..||.+|+++. ++++||||....|...
T Consensus       234 ~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~hp~f~~~~w~~l  281 (345)
T 1xjd_A          234 NPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWEEL  281 (345)
T ss_dssp             CCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTCCHHHH
T ss_pred             CCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHHcCccccCCCHHHH
Confidence                 11236688999999999999999998 9999999999887543

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=98.44  E-value=2.5e-07  Score=85.71  Aligned_cols=36  Identities=44%  Similarity=0.848  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      ++++.++|.+||.+||.+|||+.++|+||||+....
T Consensus       288 ~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~  323 (360)
T 3e3p_A          288 AKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHD  323 (360)
T ss_dssp             HHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGC
T ss_pred             cHHHHHHHHHHhccCccccCCHHHHhcCccccccCC
Confidence            457889999999999999999999999999977543

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=98.44  E-value=2.6e-07  Score=85.57  Aligned_cols=78  Identities=37%  Similarity=0.683  Sum_probs=56.8

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC-----------------------------C-------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS-----------------------------D-------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~-----------------------------~-------------  187 (351)
                      .++++|+|||+++..........+|+.|++||.+...                             .             
T Consensus       162 ~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~  241 (353)
T 3coi_A          162 DCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTG  241 (353)
T ss_dssp             TCCEEECSTTCTTC--------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHC
T ss_pred             CCcEEEeecccccCCCCCccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhC
Confidence            4679999999998876666677899999999954321                             0             


Q ss_pred             ----------------------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         188 ----------------------------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 ----------------------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                                                        ...++++.++|.+||..||.+|||+.++|+||||+.....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~~~  315 (353)
T 3coi_A          242 VPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFRDP  315 (353)
T ss_dssp             BCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTCCG
T ss_pred             CCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhccCc
Confidence                                              0113567899999999999999999999999999876543

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=98.43  E-value=1.8e-07  Score=86.56  Aligned_cols=36  Identities=31%  Similarity=0.677  Sum_probs=32.2

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +++.++|.+||..||.+|||+.++|+||||...+..
T Consensus       266 ~~~~~li~~~L~~dP~~Rpt~~ell~h~~f~~~~~~  301 (346)
T 1ua2_A          266 DDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGP  301 (346)
T ss_dssp             HHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCC
T ss_pred             HHHHHHHHHHhccChhhCCCHHHHhcChhhhcCCCC
Confidence            568899999999999999999999999999876543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=98.43  E-value=2.9e-07  Score=87.58  Aligned_cols=76  Identities=33%  Similarity=0.577  Sum_probs=53.1

Q ss_pred             CCCeEEeecCCcccCCCC--cccccCCCCccCCccccCC---C-------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPERYMAS---D-------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~--~~~~~~~~~~~~pe~~~~~---~-------------------------------------  187 (351)
                      ...++|+|||+|+.....  ....+||+.|+|||.+...   .                                     
T Consensus       278 ~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i  357 (419)
T 3i6u_A          278 DCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQI  357 (419)
T ss_dssp             SCCEEECCSSTTTSCC-----------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHH
T ss_pred             cceEEEeecccceecCCCccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHH
Confidence            345999999999774333  3457899999999976320   0                                     


Q ss_pred             ------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 ------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 ------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                                  ...++++.++|.+||..||.+|||+.++|+||||+...
T Consensus       358 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~  407 (419)
T 3i6u_A          358 TSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDED  407 (419)
T ss_dssp             HTTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCCHH
T ss_pred             hcCCCCCCchhhcccCHHHHHHHHHHccCChhHCcCHHHHhCCcccCChh
Confidence                        01235688999999999999999999999999997643

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=98.42  E-value=2.3e-07  Score=86.11  Aligned_cols=78  Identities=26%  Similarity=0.457  Sum_probs=51.3

Q ss_pred             CCCCeEEeecCCcccCCCC--cccccCCCCccCCccccCCC---------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~--~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      ..+.++|+|||+++.....  .....||+.|++||.+....                                       
T Consensus       186 ~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~  265 (349)
T 2w4o_A          186 PDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILN  265 (349)
T ss_dssp             TTCCEEECCCC----------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHT
T ss_pred             CCCCEEEccCccccccCcccccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHh
Confidence            3567999999999764332  34567999999999543210                                       


Q ss_pred             ----------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         188 ----------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       188 ----------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                                ...+.++.++|.+||..||.+|||+.++|+||||.....
T Consensus       266 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  314 (349)
T 2w4o_A          266 CEYYFISPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGKAA  314 (349)
T ss_dssp             TCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTTSTTC
T ss_pred             CCCccCCchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCCcc
Confidence                      112356889999999999999999999999999986543

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=98.42  E-value=7.3e-08  Score=88.07  Aligned_cols=37  Identities=30%  Similarity=0.613  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      +++.++|.+||..||.+|||+.++|+||||....+..
T Consensus       268 ~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~~  304 (317)
T 2pmi_A          268 GNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYYHHA  304 (317)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGCC--
T ss_pred             HHHHHHHHHHCCCCcccCCCHHHHhCChhhhcccchh
Confidence            4678999999999999999999999999998765543

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=98.42  E-value=1.2e-07  Score=87.04  Aligned_cols=35  Identities=40%  Similarity=0.682  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      +++.++|.+||.+||.+|+|+.++|+||||+...+
T Consensus       293 ~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  327 (329)
T 3gbz_A          293 DEGLDLLTAMLEMDPVKRISAKNALEHPYFSHNDF  327 (329)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSSCS
T ss_pred             HHHHHHHHHHccCChhhCCCHHHHhCCcccCCCCC
Confidence            56779999999999999999999999999987654

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=98.41  E-value=1.1e-07  Score=87.60  Aligned_cols=76  Identities=30%  Similarity=0.475  Sum_probs=59.8

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccCCCh---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASDD---------------------------------------  188 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~~---------------------------------------  188 (351)
                      .++++|+|||+++...  .......||+.|++||.+.....                                       
T Consensus       166 ~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~  245 (335)
T 3dls_A          166 DFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETVEAAIHPPY  245 (335)
T ss_dssp             TSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGGTTTCCCCSS
T ss_pred             CCcEEEeecccceECCCCCceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHHHhhccCCCc
Confidence            4679999999997643  33445689999999996543211                                       


Q ss_pred             hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         189 EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       189 ~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      ..++++.++|.+||..||.+|||+.++++||||....
T Consensus       246 ~~~~~l~~li~~~L~~dP~~Rps~~ell~hp~~~~~~  282 (335)
T 3dls_A          246 LVSKELMSLVSGLLQPVPERRTTLEKLVTDPWVTQPV  282 (335)
T ss_dssp             CCCHHHHHHHHHHTCSSGGGSCCHHHHHHCTTTTCCC
T ss_pred             ccCHHHHHHHHHHccCChhhCcCHHHHhcCccccCCc
Confidence            1235788999999999999999999999999997644

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=98.41  E-value=1.2e-07  Score=88.17  Aligned_cols=80  Identities=19%  Similarity=0.304  Sum_probs=62.1

Q ss_pred             CCCeEEeecCCcccC---CCCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||+|+..   .......+||+.|+|||.+...                                        
T Consensus       157 ~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~  236 (353)
T 2i0e_A          157 EGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEH  236 (353)
T ss_dssp             TSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC
T ss_pred             CCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhC
Confidence            567999999999763   2334557899999999955322                                        


Q ss_pred             ----ChhhHHHHHHHHHHhhccCCCCCCC-----hhhhhcCCCCCCCCchhh
Q psy2006         187 ----DDEEHRQLFDLISKMLEYEPSERIS-----LSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       187 ----~~~~~~~~~~~i~~~L~~~p~~R~t-----~~e~l~~~~~~~~~~~~~  229 (351)
                          +...++++.++|.+||..||.+|++     ++++++||||+...|...
T Consensus       237 ~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~~~w~~l  288 (353)
T 2i0e_A          237 NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKL  288 (353)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGGGTTCCHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCccccCCCHHHH
Confidence                0112367889999999999999995     699999999999887543

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=98.40  E-value=1.2e-07  Score=86.99  Aligned_cols=76  Identities=26%  Similarity=0.450  Sum_probs=58.9

Q ss_pred             CCeEEeecCCcccCC--CCcccccCCCCccCCccccCCC-----------------------------------------
Q psy2006         151 CDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASD-----------------------------------------  187 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~-----------------------------------------  187 (351)
                      .+++|+|||+++...  .......||+.|++||.+....                                         
T Consensus       155 ~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~  234 (326)
T 2y0a_A          155 PRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNY  234 (326)
T ss_dssp             CCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCC
T ss_pred             CCEEEEECCCCeECCCCCccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCC
Confidence            369999999997643  3345568999999999543210                                         


Q ss_pred             -------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         188 -------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       188 -------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                             ...++.+.++|.+||..||.+|||+.++|+||||.....
T Consensus       235 ~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  280 (326)
T 2y0a_A          235 EFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDT  280 (326)
T ss_dssp             CCCHHHHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTSCCSH
T ss_pred             CcCccccccCCHHHHHHHHHHccCChhhCCCHHHHhcCCCccCCcc
Confidence                   011345779999999999999999999999999987654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=98.40  E-value=8.3e-08  Score=90.00  Aligned_cols=31  Identities=35%  Similarity=0.674  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFD  222 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~  222 (351)
                      .++.++|.+||.+||.+|||+.++|+||||+
T Consensus       366 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~  396 (397)
T 1wak_A          366 AGFTDFLLPMLELIPEKRATAAECLRHPWLN  396 (397)
T ss_dssp             HHHHHHHGGGGCSSGGGSCCHHHHHTSGGGG
T ss_pred             HHHHHHHHHHhccChhhcCCHHHHhhCcccc
Confidence            4577999999999999999999999999985

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=98.40  E-value=9.1e-08  Score=86.42  Aligned_cols=73  Identities=30%  Similarity=0.454  Sum_probs=56.9

Q ss_pred             CCCeEEeecCCcccCCCC---cccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~---~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      .++++|+|||+++.....   .....||+.|++||.+....                                       
T Consensus       173 ~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~  252 (298)
T 2zv2_A          173 DGHIKIADFGVSNEFKGSDALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDERIMCLHSKI  252 (298)
T ss_dssp             TSCEEECCCTTCEECSSSSCEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred             CCCEEEecCCCccccccccccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCccHHHHHHHH
Confidence            467999999999764322   34568999999999664221                                       


Q ss_pred             ----------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCC
Q psy2006         188 ----------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFD  222 (351)
Q Consensus       188 ----------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~  222 (351)
                                ...++++.++|.+||..||.+|||+.++++||||+
T Consensus       253 ~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~hp~~~  297 (298)
T 2zv2_A          253 KSQALEFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVT  297 (298)
T ss_dssp             HHCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTCHHHH
T ss_pred             hcccCCCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhcCcccc
Confidence                      01235678999999999999999999999999984

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=98.39  E-value=1.5e-07  Score=84.58  Aligned_cols=75  Identities=23%  Similarity=0.415  Sum_probs=57.6

Q ss_pred             CCCCeEEeecCCcccCCCC-cccccCCCCccCCccccCCC----------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEH-HSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~-~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      ..++++|+|||++...... .....||+.|++||.+....                                        
T Consensus       167 ~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~  246 (290)
T 1t4h_A          167 PTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGV  246 (290)
T ss_dssp             TTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTC
T ss_pred             CCCCEEEeeCCCcccccccccccccCCcCcCCHHHHhccCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccC
Confidence            3557999999999764433 44567999999999543210                                        


Q ss_pred             ------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 ------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 ------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                            ....+++.++|.+||..||.+|||+.++++||||+.
T Consensus       247 ~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~f~~  288 (290)
T 1t4h_A          247 KPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             CCGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             CccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhhCccccc
Confidence                  011256889999999999999999999999999975

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=98.39  E-value=1.5e-07  Score=95.00  Aligned_cols=80  Identities=19%  Similarity=0.310  Sum_probs=63.5

Q ss_pred             CCCeEEeecCCcccC---CCCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||+|+..   .......+||+.|+|||.+...                                        
T Consensus       478 ~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~  557 (674)
T 3pfq_A          478 EGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEH  557 (674)
T ss_dssp             SSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSS
T ss_pred             CCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhC
Confidence            567999999999752   3334567899999999965422                                        


Q ss_pred             ----ChhhHHHHHHHHHHhhccCCCCCCCh-----hhhhcCCCCCCCCchhh
Q psy2006         187 ----DDEEHRQLFDLISKMLEYEPSERISL-----SEALRHPFFDKLPSSVR  229 (351)
Q Consensus       187 ----~~~~~~~~~~~i~~~L~~~p~~R~t~-----~e~l~~~~~~~~~~~~~  229 (351)
                          +...++++.++|.+||..||.+|+++     +++++||||+.+.|...
T Consensus       558 ~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~i~w~~l  609 (674)
T 3pfq_A          558 NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKL  609 (674)
T ss_dssp             CCCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGGGSSCCHHHH
T ss_pred             CCCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCccccCCCHHHH
Confidence                11234678899999999999999997     99999999999887644

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=98.38  E-value=1.5e-07  Score=87.61  Aligned_cols=34  Identities=35%  Similarity=0.787  Sum_probs=31.2

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +++.++|.+||.+||.+|+|+.++|+||||+...
T Consensus       288 ~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~  321 (364)
T 3qyz_A          288 SKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYY  321 (364)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTTC
T ss_pred             HHHHHHHHHHcCCChhhCCCHHHHhcCcchhhcc
Confidence            5678999999999999999999999999998754

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=98.38  E-value=3.4e-07  Score=88.81  Aligned_cols=77  Identities=35%  Similarity=0.568  Sum_probs=58.1

Q ss_pred             CCCCeEEeecCCcccCC--CCcccccCCCCccCCccccCCC---------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      ..+.++|+|||+|+...  ......+||+.|+|||.+....                                       
T Consensus       159 ~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~  238 (486)
T 3mwu_A          159 KDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGK  238 (486)
T ss_dssp             TTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCC
Confidence            34579999999997633  3344568999999999654321                                       


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                              ...++++.++|.+||..+|.+|||+.++|+||||+...
T Consensus       239 ~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~~~~~~  284 (486)
T 3mwu_A          239 YAFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKYS  284 (486)
T ss_dssp             CCSCSGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHHHHHTC
T ss_pred             CCCCCcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHhhccCc
Confidence                    11246788999999999999999999999999997543

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=98.38  E-value=7.6e-07  Score=85.13  Aligned_cols=75  Identities=29%  Similarity=0.415  Sum_probs=55.2

Q ss_pred             CeEEeecCCcccCCC------CcccccCCCCccCCccccCC---------------------------------------
Q psy2006         152 DIRLIDFGSATFDDE------HHSTIVSTRHYRAPERYMAS---------------------------------------  186 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~------~~~~~~~~~~~~~pe~~~~~---------------------------------------  186 (351)
                      .++|+|||+|+....      ......||+.|+|||.+...                                       
T Consensus       161 ~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~  240 (432)
T 3p23_A          161 KAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANI  240 (432)
T ss_dssp             CEEECCTTEEECC------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHH
T ss_pred             eEEEecccceeeccCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHH
Confidence            478999999976432      23446799999999976421                                       


Q ss_pred             ------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         187 ------------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       187 ------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                                  .......+.++|.+||..||.+|||+.++++||||....+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp~f~~~~~  292 (432)
T 3p23_A          241 LLGACSLDCLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFFWSLEK  292 (432)
T ss_dssp             HTTCCCCTTSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTSTTTCCHHH
T ss_pred             HhccCCccccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHhCccccChHH
Confidence                        0011344779999999999999999999999999987554

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=98.38  E-value=1.6e-07  Score=86.43  Aligned_cols=115  Identities=19%  Similarity=0.250  Sum_probs=78.8

Q ss_pred             CCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc----ccccccccCCCCeEEeecCCcccCCC----
Q psy2006          95 PYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK----KKREVRRVRRCDIRLIDFGSATFDDE----  166 (351)
Q Consensus        95 ~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~~i~h~d~k~~ni~l~Dfg~s~~~~~----  166 (351)
                      .+++..++.++.|++.|            +.++     +....+|.    .+|+..+-....++|+|||+|+....    
T Consensus       164 ~~~~~~~~~i~~qi~~~------------l~~L-----H~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~  226 (345)
T 3hko_A          164 VQREKLISNIMRQIFSA------------LHYL-----HNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNG  226 (345)
T ss_dssp             HHHHHHHHHHHHHHHHH------------HHHH-----HHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC
T ss_pred             cccHHHHHHHHHHHHHH------------HHHH-----HHCCccccCCChhhEEEecCCCceEEEeeccccccccccCcc
Confidence            35678899999999998            3333     23455664    34444322334799999999974211    


Q ss_pred             ---CcccccCCCCccCCccccCC--C------------------------------------------------hhhHHH
Q psy2006         167 ---HHSTIVSTRHYRAPERYMAS--D------------------------------------------------DEEHRQ  193 (351)
Q Consensus       167 ---~~~~~~~~~~~~~pe~~~~~--~------------------------------------------------~~~~~~  193 (351)
                         ......||+.|++||.+...  .                                                ...+++
T Consensus       227 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (345)
T 3hko_A          227 EYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVLSPL  306 (345)
T ss_dssp             --------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCTTSGGGGGSCHH
T ss_pred             ccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHhcccccCCcccccCCHH
Confidence               13456799999999965321  0                                                012357


Q ss_pred             HHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         194 LFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       194 ~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      +.++|.+||..+|.+|||+.++|+||||+...+
T Consensus       307 ~~~li~~~l~~~p~~Rps~~~~l~hp~~~~~~~  339 (345)
T 3hko_A          307 ARDLLSNLLNRNVDERFDAMRALQHPWISQFSD  339 (345)
T ss_dssp             HHHHHHHHSCSCTTTSCCHHHHHHSHHHHTTSS
T ss_pred             HHHHHHHHcCCChhHCCCHHHHhcChhhccChH
Confidence            889999999999999999999999999977653

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=98.37  E-value=2.9e-07  Score=85.83  Aligned_cols=74  Identities=27%  Similarity=0.406  Sum_probs=57.8

Q ss_pred             CCCeEEeecCCcccCCC--CcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~--~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      ...++|+|||++.....  ......||+.|++||.+....                                        
T Consensus       167 ~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~  246 (362)
T 2bdw_A          167 GAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGA  246 (362)
T ss_dssp             TCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC
T ss_pred             CCCEEEeecCcceEecCCcccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCC
Confidence            45699999999976433  234578999999999543210                                        


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                              ...++++.++|.+||..||.+|+|+.++|+||||..
T Consensus       247 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~  290 (362)
T 2bdw_A          247 YDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICN  290 (362)
T ss_dssp             CCCCTTGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSHHHHT
T ss_pred             CCCCcccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcccCC
Confidence                    112467889999999999999999999999999964

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=98.37  E-value=1.2e-07  Score=87.66  Aligned_cols=35  Identities=40%  Similarity=0.629  Sum_probs=31.2

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      +++.++|.+||.+||.+|+|++++|+||||...+.
T Consensus       286 ~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~  320 (351)
T 3mi9_A          286 PYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPM  320 (351)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSSC
T ss_pred             hHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCCC
Confidence            45789999999999999999999999999976554

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=98.37  E-value=1.7e-07  Score=86.96  Aligned_cols=80  Identities=25%  Similarity=0.431  Sum_probs=61.3

Q ss_pred             CCCCeEEeecCCcccC---CCCcccccCCCCccCCccccCCC--------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMASD--------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~~--------------------------------------  187 (351)
                      ..++++|+|||+|+..   .......+||+.|+|||.+....                                      
T Consensus       145 ~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~  224 (345)
T 3a8x_A          145 SEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTE  224 (345)
T ss_dssp             TTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CH
T ss_pred             CCCCEEEEeccccccccCCCCcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccH
Confidence            3567999999999752   23345578999999999543210                                      


Q ss_pred             ---------------hhhHHHHHHHHHHhhccCCCCCCCh------hhhhcCCCCCCCCchh
Q psy2006         188 ---------------DEEHRQLFDLISKMLEYEPSERISL------SEALRHPFFDKLPSSV  228 (351)
Q Consensus       188 ---------------~~~~~~~~~~i~~~L~~~p~~R~t~------~e~l~~~~~~~~~~~~  228 (351)
                                     ...+.++.++|.+||..||.+|+++      .++++||||....|..
T Consensus       225 ~~~~~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~~w~~  286 (345)
T 3a8x_A          225 DYLFQVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDM  286 (345)
T ss_dssp             HHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTCCHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCCCHHH
Confidence                           0113567799999999999999996      7999999999888754

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=98.37  E-value=1.9e-07  Score=86.67  Aligned_cols=36  Identities=50%  Similarity=0.867  Sum_probs=32.1

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +.+.++|.+||.+||.+|||+.++|+||||+.....
T Consensus       291 ~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  326 (362)
T 3pg1_A          291 PVALDLIAKMLEFNPQRRISTEQALRHPYFESLFDP  326 (362)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTCCG
T ss_pred             HHHHHHHHHHhcCChhhCCCHHHHHcCchhhhccCc
Confidence            457899999999999999999999999999886543

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=98.36  E-value=2.1e-07  Score=85.35  Aligned_cols=76  Identities=25%  Similarity=0.395  Sum_probs=57.9

Q ss_pred             CCCeEEeecCCcccCC-----CCcccccCCCCccCCccccCCC-------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPERYMASD-------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~-----~~~~~~~~~~~~~~pe~~~~~~-------------------------------------  187 (351)
                      .++++|+|||+++...     .......||+.|++||.+....                                     
T Consensus       141 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~  220 (323)
T 3tki_A          141 RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSD  220 (323)
T ss_dssp             TCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHH
T ss_pred             CCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence            4679999999996521     1233568999999999543210                                     


Q ss_pred             -----------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 -----------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 -----------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                                 ...++++.++|.+||.+||.+|+|+.|+++||||+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~~  269 (323)
T 3tki_A          221 WKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPL  269 (323)
T ss_dssp             HHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCCC
T ss_pred             HhcccccCCccccCCHHHHHHHHHHccCChhhCcCHHHHhhChhhcccc
Confidence                       11235677999999999999999999999999997643

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=98.36  E-value=1e-07  Score=87.53  Aligned_cols=78  Identities=23%  Similarity=0.327  Sum_probs=57.6

Q ss_pred             CCCeEEeecCCcccCCC--CcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~--~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      .+.++|+|||+++....  ......||+.|++||.+....                                        
T Consensus       170 ~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~  249 (327)
T 3lm5_A          170 LGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVN  249 (327)
T ss_dssp             BCCEEECCGGGCEEC---------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC
T ss_pred             CCcEEEeeCccccccCCccccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcc
Confidence            56799999999976433  234568999999999543220                                        


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                              ...++.+.++|.+||..||.+|||++++|+||||+...+.
T Consensus       250 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~~~~~~~  297 (327)
T 3lm5_A          250 VDYSEETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQWDFE  297 (327)
T ss_dssp             CCCCTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCGGGCCCCTT
T ss_pred             cccCchhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCCHhhcccccc
Confidence                    1123568899999999999999999999999999887654

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=98.36  E-value=2.4e-07  Score=87.18  Aligned_cols=81  Identities=23%  Similarity=0.459  Sum_probs=63.5

Q ss_pred             CCCCeEEeecCCcccC--CCCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~--~~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      ..++++|+|||+|+..  .......+||+.|+|||.+...                                        
T Consensus       150 ~~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~  229 (384)
T 4fr4_A          150 EHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIV  229 (384)
T ss_dssp             TTSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHH
T ss_pred             CCCCEEEeccceeeeccCCCceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHH
Confidence            3567999999999763  3345567899999999976421                                        


Q ss_pred             ----------ChhhHHHHHHHHHHhhccCCCCCCC-hhhhhcCCCCCCCCchhh
Q psy2006         187 ----------DDEEHRQLFDLISKMLEYEPSERIS-LSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       187 ----------~~~~~~~~~~~i~~~L~~~p~~R~t-~~e~l~~~~~~~~~~~~~  229 (351)
                                +...++++.++|.+||..||.+|++ +++++.||||....|..-
T Consensus       230 ~~~~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~hp~f~~~~w~~~  283 (384)
T 4fr4_A          230 HTFETTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQNFPYMNDINWDAV  283 (384)
T ss_dssp             HHHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHTSGGGTTCCHHHH
T ss_pred             HHHhhcccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHcChhhhcCCHHHH
Confidence                      0011256789999999999999998 899999999999887544

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=98.35  E-value=9.2e-08  Score=87.65  Aligned_cols=34  Identities=41%  Similarity=0.717  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +++.++|.+||.+||.+|+|++|+|+||||....
T Consensus       256 ~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  289 (324)
T 3mtl_A          256 SDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLG  289 (324)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGC
T ss_pred             HHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcc
Confidence            4567999999999999999999999999997654

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=98.35  E-value=1.6e-07  Score=85.88  Aligned_cols=35  Identities=29%  Similarity=0.680  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      ++++.++|.+||.+||.+|+|++++|+||||+...
T Consensus       293 ~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f~~~~  327 (330)
T 3nsz_A          293 SPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVV  327 (330)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCCHHHHHTSGGGTTCC
T ss_pred             CHHHHHHHHHHhcCCcccCCCHHHHhcCccHhhhc
Confidence            46678999999999999999999999999998765

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=98.34  E-value=1.5e-07  Score=85.40  Aligned_cols=36  Identities=25%  Similarity=0.608  Sum_probs=30.7

Q ss_pred             HHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         193 QLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       193 ~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      ++.++|.+||.+||.+|||++++++||||+......
T Consensus       260 ~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~~  295 (311)
T 4agu_A          260 PALGLLKGCLHMDPTERLTCEQLLHHPYFENIREIE  295 (311)
T ss_dssp             HHHHHHHHHCCSSTTTSCCHHHHHTSGGGTTCC---
T ss_pred             HHHHHHHHHccCChhhcCCHHHHhcChHHHhccCHH
Confidence            467899999999999999999999999998876543

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=98.33  E-value=2e-07  Score=84.93  Aligned_cols=99  Identities=16%  Similarity=0.216  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC-----CCcccccC
Q psy2006          99 DQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD-----EHHSTIVS  173 (351)
Q Consensus        99 ~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~-----~~~~~~~~  173 (351)
                      ..++.++..+...|.+++.|.+.+.                 .+|+..  ..+++||+|||+|+...     ......+|
T Consensus       136 ~i~~qia~gL~yLH~~~IiHRDlKp-----------------~NILl~--~~~~~Ki~DFGla~~~~~~~~~~~~~~~~G  196 (307)
T 3omv_A          136 DIARQTAQGMDYLHAKNIIHRDMKS-----------------NNIFLH--EGLTVKIGDFGLATVKSRWSGSQQVEQPTG  196 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCSCCCS-----------------SSEEEE--TTEEEEECCCSSCBC------------CCC
T ss_pred             HHHHHHHHHHHHHHHCCccCCccCH-----------------HHEEEC--CCCcEEEeeccCceecccCCcceeeccccc
Confidence            3467778888777666665555222                 222221  24569999999997632     22345689


Q ss_pred             CCCccCCccccCC-----------------------------------------------------ChhhHHHHHHHHHH
Q psy2006         174 TRHYRAPERYMAS-----------------------------------------------------DDEEHRQLFDLISK  200 (351)
Q Consensus       174 ~~~~~~pe~~~~~-----------------------------------------------------~~~~~~~~~~~i~~  200 (351)
                      |+.|+|||.+...                                                     ....++++.+++.+
T Consensus       197 T~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~  276 (307)
T 3omv_A          197 SVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVAD  276 (307)
T ss_dssp             CTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCSTTSCTTSCHHHHHHHHH
T ss_pred             CCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCcccccccchHHHHHHHHH
Confidence            9999999965311                                                     01123568899999


Q ss_pred             hhccCCCCCCChhhhh
Q psy2006         201 MLEYEPSERISLSEAL  216 (351)
Q Consensus       201 ~L~~~p~~R~t~~e~l  216 (351)
                      |+..||++|||+.+++
T Consensus       277 cl~~dP~~RPs~~ei~  292 (307)
T 3omv_A          277 CVKKVKEERPLFPQIL  292 (307)
T ss_dssp             HTCSSSTTSCCHHHHH
T ss_pred             HcCCCHhHCcCHHHHH
Confidence            9999999999998764

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=98.33  E-value=2.4e-07  Score=82.59  Aligned_cols=74  Identities=15%  Similarity=0.187  Sum_probs=55.6

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCC------------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD------------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~------------------------------------------  187 (351)
                      ...++|+|||.+....... ...||+.|++||.+....                                          
T Consensus       170 ~~~~kl~Dfg~~~~~~~~~-~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~  248 (289)
T 1x8b_A          170 KVMFKIGDLGHVTRISSPQ-VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEIRQGRLPRI  248 (289)
T ss_dssp             CCCEEECCCTTCEETTCSC-CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHHHHHHTTCCCCC
T ss_pred             ceEEEEcccccccccCCcc-ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHHHHHHcCCCCCC
Confidence            4468999999997754432 346899999999653220                                          


Q ss_pred             -hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         188 -DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       188 -~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                       ...++++.++|.+||..||.+|||+.++++||||...
T Consensus       249 ~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  286 (289)
T 1x8b_A          249 PQVLSQEFTELLKVMIHPDPERRPSAMALVKHSVLLSA  286 (289)
T ss_dssp             SSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTCTTC---
T ss_pred             CcccCHHHHHHHHHHhCCCcccCCCHHHHhhChHhhhh
Confidence             1123568899999999999999999999999999753

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=98.33  E-value=4.1e-07  Score=86.61  Aligned_cols=34  Identities=41%  Similarity=0.718  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +++.++|.+||.+||.+|+|+.++|+||||+...
T Consensus       311 ~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~~  344 (420)
T 1j1b_A          311 PEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  344 (420)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             HHHHHHHHHhccCChhHCCCHHHHhCCHhhcccc
Confidence            5688999999999999999999999999997644

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=98.33  E-value=2.5e-07  Score=87.54  Aligned_cols=75  Identities=28%  Similarity=0.413  Sum_probs=53.4

Q ss_pred             CCCeEEeecCCcccCCC--CcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~--~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      .+.++|+|||+++....  .....+||+.|++||.+....                                        
T Consensus       200 ~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i  279 (400)
T 1nxk_A          200 NAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRI  279 (400)
T ss_dssp             TCCEEECCCTTCEECC-----------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHH
T ss_pred             CccEEEEecccccccCCCCccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHH
Confidence            56799999999976432  345578999999999653210                                        


Q ss_pred             ------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         188 ------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       188 ------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                                  ...++++.++|.+||..||.+|+|+.++++||||...
T Consensus       280 ~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~  328 (400)
T 1nxk_A          280 RMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS  328 (400)
T ss_dssp             HHTCCCCCTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             HcCcccCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccCC
Confidence                        1234678899999999999999999999999999653

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=98.33  E-value=3.3e-07  Score=86.42  Aligned_cols=106  Identities=22%  Similarity=0.316  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC-----cccccCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH-----HSTIVST  174 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~-----~~~~~~~  174 (351)
                      .++.++..|..-|..++.|.+...                 .+|+.   ..++++|+|||+|+.....     ....+||
T Consensus       160 i~~qi~~aL~~lH~~~ivHrDlkp-----------------~NIll---~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt  219 (390)
T 2zmd_A          160 YWKNMLEAVHTIHQHGIVHSDLKP-----------------ANFLI---VDGMLKLIDFGIANQMQPDTTSVVKDSQVGA  219 (390)
T ss_dssp             HHHHHHHHHHHHHTTTCCCCCCCG-----------------GGEEE---SSSCEEECCCSSSCCC---------CCSCCC
T ss_pred             HHHHHHHHHHHHHHCCeeecCCCH-----------------HHEEE---ECCeEEEEecCccccccCCCccccCCCCCcC
Confidence            356667777766655555444222                 23333   2367999999999764322     2346799


Q ss_pred             CCccCCccccCC---------------------------------C------h-------------------hhHHHHHH
Q psy2006         175 RHYRAPERYMAS---------------------------------D------D-------------------EEHRQLFD  196 (351)
Q Consensus       175 ~~~~~pe~~~~~---------------------------------~------~-------------------~~~~~~~~  196 (351)
                      +.|+|||.+...                                 .      .                   ....++.+
T Consensus       220 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (390)
T 2zmd_A          220 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQD  299 (390)
T ss_dssp             GGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTSCCCCCCCSCHHHHH
T ss_pred             CCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccccCCCCccchHHHHH
Confidence            999999976320                                 0      0                   01246789


Q ss_pred             HHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         197 LISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       197 ~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +|.+||..||.+|||+.++|+||||+...
T Consensus       300 li~~~L~~dP~~Rps~~ell~hp~~~~~~  328 (390)
T 2zmd_A          300 VLKCCLKRDPKQRISIPELLAHPYVQIQT  328 (390)
T ss_dssp             HHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred             HHHHHcccChhhCCCHHHHhhCcCccccC
Confidence            99999999999999999999999996543

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=98.32  E-value=4e-07  Score=85.40  Aligned_cols=76  Identities=38%  Similarity=0.648  Sum_probs=58.3

Q ss_pred             CCCCeEEeecCCcccC--CCCcccccCCCCccCCccccCCC-----------------------------h---------
Q psy2006         149 RRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPERYMASD-----------------------------D---------  188 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~--~~~~~~~~~~~~~~~pe~~~~~~-----------------------------~---------  188 (351)
                      +.+.++|+|||+|+..  ........+|+.|+|||.+....                             .         
T Consensus       177 ~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~  256 (383)
T 3eb0_A          177 KDNTLKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGETSIDQLVRIIQ  256 (383)
T ss_dssp             TTTEEEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCChHHHHHHHHH
Confidence            4566999999999753  34445578899999999654210                             0         


Q ss_pred             ------------------------------------hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         189 ------------------------------------EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       189 ------------------------------------~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                                                          ..++++.++|.+||.+||.+|+|+.|+|+||||+..
T Consensus       257 ~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  328 (383)
T 3eb0_A          257 IMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFFDHL  328 (383)
T ss_dssp             HHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGHHH
T ss_pred             HhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcCHHHHHH
Confidence                                                012347899999999999999999999999999654

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=98.31  E-value=1.3e-07  Score=84.91  Aligned_cols=32  Identities=41%  Similarity=0.773  Sum_probs=29.1

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                      +++.++|.+||..||.+|||++++|+||||+.
T Consensus       255 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~  286 (288)
T 1ob3_A          255 ESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (288)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHhcCcchhh
Confidence            45668999999999999999999999999964

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=98.31  E-value=2.7e-07  Score=85.21  Aligned_cols=106  Identities=25%  Similarity=0.341  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC-----cccccCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH-----HSTIVST  174 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~-----~~~~~~~  174 (351)
                      .++.++..|..-|.+++.|.+...                 .+|+.   ..+.++|+|||+|+.....     .....||
T Consensus       113 i~~qi~~al~~lH~~~iiHrDikp-----------------~NIll---~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt  172 (343)
T 3dbq_A          113 YWKNMLEAVHTIHQHGIVHSDLKP-----------------ANFLI---VDGMLKLIDFGIANQMQPDTTSVVKDSQVGT  172 (343)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCG-----------------GGEEE---ETTEEEECCCSSSCCC------------CCC
T ss_pred             HHHHHHHHHHHHHhCCeecCCCCc-----------------ceEEE---ECCcEEEeecccccccCcccccccCCCCcCC
Confidence            356666666666555555444222                 23332   2356999999999764322     2346799


Q ss_pred             CCccCCccccC-----------C----------------------C-------------------------hhhHHHHHH
Q psy2006         175 RHYRAPERYMA-----------S----------------------D-------------------------DEEHRQLFD  196 (351)
Q Consensus       175 ~~~~~pe~~~~-----------~----------------------~-------------------------~~~~~~~~~  196 (351)
                      +.|++||.+..           .                      .                         .....++.+
T Consensus       173 ~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  252 (343)
T 3dbq_A          173 VNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQD  252 (343)
T ss_dssp             CSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTSCCCCCCCSCHHHHH
T ss_pred             cCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCcccCCcccCCHHHHH
Confidence            99999997632           0                      0                         001146889


Q ss_pred             HHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         197 LISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       197 ~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +|.+||..||.+|||+.++|+||||+...
T Consensus       253 li~~~L~~dp~~Rpt~~e~l~hp~~~~~~  281 (343)
T 3dbq_A          253 VLKCCLKRDPKQRISIPELLAHPYVQIQT  281 (343)
T ss_dssp             HHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred             HHHHHcCCChhHCCCHHHHHhCccccccC
Confidence            99999999999999999999999996533

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=98.30  E-value=9.3e-08  Score=89.35  Aligned_cols=77  Identities=18%  Similarity=0.139  Sum_probs=61.1

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccC--C---------------------------C-------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMA--S---------------------------D-------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~--~---------------------------~-------------  187 (351)
                      .++++|+|||+|+..........+|+.|+|||.+..  .                           .             
T Consensus       230 ~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~~~~~~  309 (371)
T 3q60_A          230 DGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKGSWKRPSL  309 (371)
T ss_dssp             TSCEEECCGGGEEETTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTTCCCBCCT
T ss_pred             CCCEEEEecceeeecCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCcccccchhhhhh
Confidence            467999999999876665545677799999996542  0                           0             


Q ss_pred             -------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         188 -------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       188 -------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                                   ...++.+.++|.+||.+||.+|||+.++|+||||+...+
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~  361 (371)
T 3q60_A          310 RVPGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQLQN  361 (371)
T ss_dssp             TSCCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHHHHH
T ss_pred             hhccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHHHHH
Confidence                         122478999999999999999999999999999976543

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=98.30  E-value=3e-07  Score=84.00  Aligned_cols=77  Identities=31%  Similarity=0.468  Sum_probs=59.3

Q ss_pred             CeEEeecCCcccCCC--CcccccCCCCccCCccccCCC------------------------------------------
Q psy2006         152 DIRLIDFGSATFDDE--HHSTIVSTRHYRAPERYMASD------------------------------------------  187 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~--~~~~~~~~~~~~~pe~~~~~~------------------------------------------  187 (351)
                      +++|+|||+++....  ......||+.|++||.+....                                          
T Consensus       157 ~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~  236 (321)
T 2a2a_A          157 HIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYD  236 (321)
T ss_dssp             CEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCC
T ss_pred             CEEEccCccceecCccccccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccc
Confidence            699999999976432  334567999999999543210                                          


Q ss_pred             ------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         188 ------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       188 ------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                            ...++.+.++|.+||..||.+|||+.++++||||....+..
T Consensus       237 ~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp~~~~~~~~~  283 (321)
T 2a2a_A          237 FDEEFFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPWITPVDNQQ  283 (321)
T ss_dssp             CCHHHHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHSTTTSCSSHHH
T ss_pred             cChhhhcccCHHHHHHHHHHcCCChhhCcCHHHHhcCccccCCCccc
Confidence                  01234678999999999999999999999999998876543

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=98.30  E-value=3.3e-07  Score=85.01  Aligned_cols=75  Identities=32%  Similarity=0.463  Sum_probs=57.5

Q ss_pred             CCCeEEeecCCcccCCCC---cccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~---~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      ...++|+|||+++.....   .....||+.|++||.+....                                       
T Consensus       169 ~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~i~~~~  248 (351)
T 3c0i_A          169 SAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKERLFEGIIKGK  248 (351)
T ss_dssp             TCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHHHHHHHHHHTC
T ss_pred             CCcEEEecCcceeEecCCCeeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHHHHHHHHHcCC
Confidence            345999999999764332   34568999999999653220                                       


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                              ...++++.++|.+||..||.+|+|+.++|+||||+..
T Consensus       249 ~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~  293 (351)
T 3c0i_A          249 YKMNPRQWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKER  293 (351)
T ss_dssp             CCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTH
T ss_pred             CCCCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcChhhcCC
Confidence                    0123568899999999999999999999999999753

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=98.30  E-value=2.4e-07  Score=85.01  Aligned_cols=79  Identities=28%  Similarity=0.407  Sum_probs=57.9

Q ss_pred             CCCeEEeecCCcccC---CCCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||+++..   ........||+.|++||.+...                                        
T Consensus       157 ~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~  236 (327)
T 3a62_A          157 QGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKC  236 (327)
T ss_dssp             TSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHT
T ss_pred             CCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhC
Confidence            467999999999752   2223456899999999965321                                        


Q ss_pred             ----ChhhHHHHHHHHHHhhccCCCCCC-----ChhhhhcCCCCCCCCchh
Q psy2006         187 ----DDEEHRQLFDLISKMLEYEPSERI-----SLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       187 ----~~~~~~~~~~~i~~~L~~~p~~R~-----t~~e~l~~~~~~~~~~~~  228 (351)
                          +...++++.++|.+||..+|.+|+     ++.++++||||+...|..
T Consensus       237 ~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~~~~~  287 (327)
T 3a62_A          237 KLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEE  287 (327)
T ss_dssp             CCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGGSSCCHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCcccCCCHHH
Confidence                011235688999999999999999     789999999999877654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=98.29  E-value=2.1e-07  Score=90.09  Aligned_cols=74  Identities=22%  Similarity=0.416  Sum_probs=58.5

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      .++++|+|||+|+...  ......+||+.|+|||.+....                                        
T Consensus       152 ~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~  231 (476)
T 2y94_A          152 HMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDG  231 (476)
T ss_dssp             TCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTT
T ss_pred             CCCeEEEeccchhhccccccccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcC
Confidence            4679999999997643  3345678999999999654321                                        


Q ss_pred             -----hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 -----DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 -----~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                           ...++++.++|.+||..||.+|||+.++++||||..
T Consensus       232 ~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~hp~~~~  272 (476)
T 2y94_A          232 IFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQ  272 (476)
T ss_dssp             CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHT
T ss_pred             CcCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHhCHHhhh
Confidence                 112356889999999999999999999999999965

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=98.29  E-value=7.1e-07  Score=80.72  Aligned_cols=77  Identities=31%  Similarity=0.488  Sum_probs=59.5

Q ss_pred             CCCCeEEeecCCcccCCCC-cccccCCCCccCCccccCCC----------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEH-HSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~-~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      ..++++|+|||++...... .....|++.|++||.+....                                        
T Consensus       144 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~  223 (304)
T 2jam_A          144 ENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGY  223 (304)
T ss_dssp             TTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCC
T ss_pred             CCCCEEEccCCcceecCCCccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCC
Confidence            4567999999999764433 34467999999999653220                                        


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                              ...++++.++|.+||..||.+|||+.++++||||....
T Consensus       224 ~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  269 (304)
T 2jam_A          224 YEFESPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGNT  269 (304)
T ss_dssp             CCCCTTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHSSC
T ss_pred             CCCCccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCccccCCC
Confidence                    11236788999999999999999999999999996543

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=98.29  E-value=3.8e-07  Score=83.52  Aligned_cols=76  Identities=29%  Similarity=0.406  Sum_probs=58.0

Q ss_pred             CCCeEEeecCCcccCCC---CcccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~---~~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      .++++|+|||++.....   ......||+.|++||.+....                                       
T Consensus       177 ~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~~~  256 (321)
T 2c30_A          177 DGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLRDS  256 (321)
T ss_dssp             TCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS
T ss_pred             CCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhcC
Confidence            46799999999975332   234568999999999543210                                       


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                              ...++.+.++|.+||..||.+|||+.++++||||....
T Consensus       257 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~~  302 (321)
T 2c30_A          257 PPPKLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQTG  302 (321)
T ss_dssp             SCCCCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGGGCC
T ss_pred             CCCCcCccccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhccCC
Confidence                    01235688999999999999999999999999996543

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=98.28  E-value=3.2e-07  Score=82.01  Aligned_cols=77  Identities=26%  Similarity=0.380  Sum_probs=58.8

Q ss_pred             CCCeEEeecCCcccCCCC--cccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~--~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      ...++|+|||++......  .....||+.|++||.+....                                        
T Consensus       144 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~  223 (284)
T 3kk8_A          144 GAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGA  223 (284)
T ss_dssp             TCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTC
T ss_pred             CCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhcc
Confidence            345999999999664332  34568999999999543220                                        


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                              ...++++.++|.+||..||.+|||+.++++||||.....
T Consensus       224 ~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~  270 (284)
T 3kk8_A          224 YDYPSPEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNRER  270 (284)
T ss_dssp             CCCCTTTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHHHHSCCC
T ss_pred             ccCCchhhcccCHHHHHHHHHHcccChhhCCCHHHHhcCccccCChh
Confidence                    122467889999999999999999999999999976543

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=98.27  E-value=5.3e-07  Score=87.61  Aligned_cols=74  Identities=28%  Similarity=0.464  Sum_probs=57.5

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      ...++|+|||+|+...  ......+||+.|+|||.+....                                        
T Consensus       175 ~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~  254 (494)
T 3lij_A          175 DALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRKKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKY  254 (494)
T ss_dssp             TCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC
T ss_pred             CCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHcccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCC
Confidence            4559999999996532  3345578999999999543210                                        


Q ss_pred             -------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 -------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 -------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                             ...++++.++|.+||.++|.+|||+.++|+||||+.
T Consensus       255 ~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~  297 (494)
T 3lij_A          255 TFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKE  297 (494)
T ss_dssp             CCCSGGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHH
T ss_pred             CCCchhcccCCHHHHHHHHHHCCCChhhCccHHHHhcCccccc
Confidence                   112467889999999999999999999999999965

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=98.27  E-value=7.3e-07  Score=81.46  Aligned_cols=79  Identities=27%  Similarity=0.415  Sum_probs=60.7

Q ss_pred             CCCCeEEeecCCcccCCC-CcccccCCCCccCCccccCCC---------------------------------------h
Q psy2006         149 RRCDIRLIDFGSATFDDE-HHSTIVSTRHYRAPERYMASD---------------------------------------D  188 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~-~~~~~~~~~~~~~pe~~~~~~---------------------------------------~  188 (351)
                      ..++++|+|||+++.... ......||+.|++||.+....                                       .
T Consensus       185 ~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~  264 (320)
T 3a99_A          185 NRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQ  264 (320)
T ss_dssp             TTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHCCCCCSS
T ss_pred             CCCCEEEeeCccccccccccccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhhhcccccccc
Confidence            456799999999976433 344567999999999543211                                       1


Q ss_pred             hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         189 EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       189 ~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      ..++++.++|.+||..||.+|||+.++++||||+.....
T Consensus       265 ~~~~~~~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~~~  303 (320)
T 3a99_A          265 RVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLP  303 (320)
T ss_dssp             CCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSCCCH
T ss_pred             cCCHHHHHHHHHHccCChhhCcCHHHHhcCHhhcCccCc
Confidence            123568899999999999999999999999999876643

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=98.27  E-value=2.1e-07  Score=90.10  Aligned_cols=76  Identities=36%  Similarity=0.508  Sum_probs=58.9

Q ss_pred             CCCCeEEeecCCcccC--CCCcccccCCCCccCCccccCCC---------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~--~~~~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      +.++++|+|||+|+..  .......+||+.|+|||.+....                                       
T Consensus       164 ~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~  243 (484)
T 3nyv_A          164 KDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHGTYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGK  243 (484)
T ss_dssp             TTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCC
T ss_pred             CCCcEEEEeeeeeEEcccccccccCCCCccccCceeecCCCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCC
Confidence            4567999999999653  33344568999999999543210                                       


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                              ...++++.++|.+||.++|.+|||+.++|+||||+..
T Consensus       244 ~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~  288 (484)
T 3nyv_A          244 YTFELPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTY  288 (484)
T ss_dssp             CCCCSGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHHH
T ss_pred             CCCCCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChhhccc
Confidence                    1224678899999999999999999999999999643

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=98.26  E-value=3.9e-07  Score=85.45  Aligned_cols=80  Identities=24%  Similarity=0.302  Sum_probs=62.3

Q ss_pred             CCCeEEeecCCcccC---CCCcccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      .++++|+|||+|+..   .......+||+.|++||.+....                                       
T Consensus       175 ~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~  254 (373)
T 2r5t_A          175 QGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNK  254 (373)
T ss_dssp             TSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHS
T ss_pred             CCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhc
Confidence            567999999999752   33345678999999999654221                                       


Q ss_pred             -----hhhHHHHHHHHHHhhccCCCCCCCh----hhhhcCCCCCCCCchhh
Q psy2006         188 -----DEEHRQLFDLISKMLEYEPSERISL----SEALRHPFFDKLPSSVR  229 (351)
Q Consensus       188 -----~~~~~~~~~~i~~~L~~~p~~R~t~----~e~l~~~~~~~~~~~~~  229 (351)
                           ...+.++.++|.+||..||.+|+++    .+++.||||....|...
T Consensus       255 ~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~~f~~~~w~~l  305 (373)
T 2r5t_A          255 PLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLINWDDL  305 (373)
T ss_dssp             CCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSGGGTTCCHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHHhCCccccCCCHHHH
Confidence                 1123567899999999999999997    58999999999887644

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=98.26  E-value=2.7e-07  Score=91.25  Aligned_cols=80  Identities=31%  Similarity=0.359  Sum_probs=62.3

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccCC-----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMAS-----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~-----------------------------------------  186 (351)
                      .++++|+|||+|+...  ......+||+.|+|||.+...                                         
T Consensus       322 ~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i  401 (576)
T 2acx_A          322 HGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLV  401 (576)
T ss_dssp             TSCEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHH
T ss_pred             CCCeEEEecccceecccCccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHh
Confidence            5679999999997643  334557899999999954321                                         


Q ss_pred             -------ChhhHHHHHHHHHHhhccCCCCCC-----ChhhhhcCCCCCCCCchhh
Q psy2006         187 -------DDEEHRQLFDLISKMLEYEPSERI-----SLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       187 -------~~~~~~~~~~~i~~~L~~~p~~R~-----t~~e~l~~~~~~~~~~~~~  229 (351)
                             ....++++.++|.+||..||.+|+     +++++++||||+...|..-
T Consensus       402 ~~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~i~w~~l  456 (576)
T 2acx_A          402 KEVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKKLNFKRL  456 (576)
T ss_dssp             HHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTTCCHHHH
T ss_pred             hcccccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChhhccCCHHHH
Confidence                   011235688999999999999999     7899999999999887543

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=98.25  E-value=4.4e-07  Score=80.85  Aligned_cols=76  Identities=34%  Similarity=0.495  Sum_probs=43.8

Q ss_pred             CCCeEEeecCCcccCCC---CcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~---~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||++.....   ......||+.|++||.+...                                        
T Consensus       148 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~  227 (278)
T 3cok_A          148 NMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLA  227 (278)
T ss_dssp             TCCEEECCCTTCEECC----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSS
T ss_pred             CCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhc
Confidence            46799999999976432   23346789999999954321                                        


Q ss_pred             ----ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         187 ----DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       187 ----~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                          +...+.++.++|.+||..||.+|||++++++||||....
T Consensus       228 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  270 (278)
T 3cok_A          228 DYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRNS  270 (278)
T ss_dssp             CCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSTTTC---
T ss_pred             ccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhcCccccCCC
Confidence                112346788999999999999999999999999997644

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=98.24  E-value=2.5e-07  Score=86.67  Aligned_cols=74  Identities=22%  Similarity=0.313  Sum_probs=59.8

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC-----------C-------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS-----------D-------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~-----------~-------------------------------  187 (351)
                      .++++|+|||+|+..........| +.|+|||.+...           .                               
T Consensus       242 ~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~  320 (377)
T 3byv_A          242 RGGVFLTGFEHLVRDGARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALG  320 (377)
T ss_dssp             TCCEEECCGGGCEETTCEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------C
T ss_pred             CCCEEEEechhheecCCcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCccccccc
Confidence            467999999999887666666778 999999975422           0                               


Q ss_pred             ---------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         188 ---------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       188 ---------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                               ...++++.++|.+||..||.+|||+.++++||||+..
T Consensus       321 ~~~~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~  366 (377)
T 3byv_A          321 GSEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQL  366 (377)
T ss_dssp             CSGGGGSSCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSHHHHHH
T ss_pred             chhhhhhhccCCCHHHHHHHHHHcCCCchhCCCHHHHhhChHHHHH
Confidence                     1123578899999999999999999999999998653

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=98.23  E-value=3.6e-07  Score=85.40  Aligned_cols=35  Identities=46%  Similarity=0.642  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      ++++.++|.+||.+||.+|+|++++|+||||+...
T Consensus       292 ~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~~  326 (371)
T 2xrw_A          292 ASQARDLLSKMLVIDASKRISVDEALQHPYINVWY  326 (371)
T ss_dssp             HHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTTC
T ss_pred             cHHHHHHHHHHCcCChhhCCCHHHHhCCcchhhhc
Confidence            45788999999999999999999999999997544

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=98.23  E-value=1.1e-06  Score=78.03  Aligned_cols=76  Identities=25%  Similarity=0.395  Sum_probs=57.8

Q ss_pred             CCCeEEeecCCcccCC-----CCcccccCCCCccCCccccCCC-------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPERYMASD-------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~-----~~~~~~~~~~~~~~pe~~~~~~-------------------------------------  187 (351)
                      .++++|+|||++....     .......|++.|++||.+....                                     
T Consensus       141 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~  220 (276)
T 2yex_A          141 RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSD  220 (276)
T ss_dssp             TCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHH
T ss_pred             CCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence            4679999999996522     1234467899999999653211                                     


Q ss_pred             -----------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 -----------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 -----------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                                 ...++.+.++|.+||..||.+|||++++++||||+...
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~  269 (276)
T 2yex_A          221 WKEKKTYLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKPL  269 (276)
T ss_dssp             HHTTCTTSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCCC
T ss_pred             hhhcccccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcCccccChh
Confidence                       01235678999999999999999999999999997654

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=98.23  E-value=2e-07  Score=83.18  Aligned_cols=75  Identities=28%  Similarity=0.441  Sum_probs=54.5

Q ss_pred             CCCCeEEeecCCcccCCC-CcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDE-HHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~-~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      ..++++|+|||++..... ......|++.|++||.+....                                        
T Consensus       144 ~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~  223 (279)
T 3fdn_A          144 SAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVE  223 (279)
T ss_dssp             TTSCEEECSCCEESCC--------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTC
T ss_pred             CCCCEEEEeccccccCCcccccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCC
Confidence            356799999999866433 344568999999999543220                                        


Q ss_pred             ----hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 ----DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 ----~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                          ...++++.++|.+||..||.+|||+.++++||||+.
T Consensus       224 ~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~  263 (279)
T 3fdn_A          224 FTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITA  263 (279)
T ss_dssp             CCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCccccC
Confidence                112356789999999999999999999999999854

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=98.23  E-value=1.9e-06  Score=78.06  Aligned_cols=77  Identities=34%  Similarity=0.442  Sum_probs=58.6

Q ss_pred             CCCCeEEeecCCcccC-CCCcccccCCCCccCCccccCCC---------------------------------------h
Q psy2006         149 RRCDIRLIDFGSATFD-DEHHSTIVSTRHYRAPERYMASD---------------------------------------D  188 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~-~~~~~~~~~~~~~~~pe~~~~~~---------------------------------------~  188 (351)
                      ..+.++|+|||+++.. ........|++.|++||.+....                                       .
T Consensus       175 ~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~  254 (312)
T 2iwi_A          175 RRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEILEAELHFPA  254 (312)
T ss_dssp             TTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHTCCCCCT
T ss_pred             CCCeEEEEEcchhhhcccCcccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHHHhhhccCCcc
Confidence            4566999999999764 33345567999999999543210                                       1


Q ss_pred             hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         189 EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       189 ~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      ..+.++.++|.+||..+|.+|||+.++++||||+...
T Consensus       255 ~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~~  291 (312)
T 2iwi_A          255 HVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPA  291 (312)
T ss_dssp             TSCHHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC--
T ss_pred             cCCHHHHHHHHHHccCChhhCcCHHHHhcChhhcCch
Confidence            2235688999999999999999999999999997654

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=98.22  E-value=3.2e-07  Score=84.14  Aligned_cols=73  Identities=27%  Similarity=0.425  Sum_probs=43.1

Q ss_pred             CeEEeecCCcccCC---CCcccccCCCCccCCccccCCC-----------------------------------------
Q psy2006         152 DIRLIDFGSATFDD---EHHSTIVSTRHYRAPERYMASD-----------------------------------------  187 (351)
Q Consensus       152 ni~l~Dfg~s~~~~---~~~~~~~~~~~~~~pe~~~~~~-----------------------------------------  187 (351)
                      .++|+|||+++...   ......++|+.|++||.+....                                         
T Consensus       147 ~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~  226 (325)
T 3kn6_A          147 EIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMK  226 (325)
T ss_dssp             EEEECCCTTCEECCC----------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHH
T ss_pred             cEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHH
Confidence            58999999997532   2334567899999999543210                                         


Q ss_pred             --------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         188 --------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       188 --------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                                    ...++++.++|.+||..||.+|||++++++||||+..
T Consensus       227 ~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~~~~  277 (325)
T 3kn6_A          227 KIKKGDFSFEGEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDG  277 (325)
T ss_dssp             HHTTTCCCCCSHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGGCTT
T ss_pred             HHHcCCCCCCcccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChhhccC
Confidence                          0124678899999999999999999999999999764

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=98.21  E-value=1.5e-06  Score=78.82  Aligned_cols=34  Identities=32%  Similarity=0.510  Sum_probs=29.3

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +++.++|.+||..||.+|||+.++|+||||+...
T Consensus       270 ~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~~  303 (316)
T 2ac3_A          270 CAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGCA  303 (316)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHHSTTCC---
T ss_pred             HHHHHHHHHHhhCChhhCCCHHHHhcChhhcCCC
Confidence            4678999999999999999999999999998754

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=98.21  E-value=3.5e-07  Score=85.37  Aligned_cols=74  Identities=36%  Similarity=0.634  Sum_probs=56.6

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccCC----------------------------C------------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMAS----------------------------D------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~----------------------------~------------  187 (351)
                      .+.++|+|||++....  .......||+.|++||.+...                            .            
T Consensus       236 ~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~  315 (365)
T 2y7j_A          236 NMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLR  315 (365)
T ss_dssp             TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             CCCEEEEecCcccccCCCcccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHH
Confidence            4679999999997533  334557899999999965310                            0            


Q ss_pred             --------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 --------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 --------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                                    ...+..+.++|.+||..||.+|||+.++|+||||+.
T Consensus       316 ~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~f~r  365 (365)
T 2y7j_A          316 MIMEGQYQFSSPEWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFER  365 (365)
T ss_dssp             HHHHTCCCCCHHHHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCC
T ss_pred             HHHhCCCCCCCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcccCC
Confidence                          001234789999999999999999999999999963

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=98.21  E-value=6.9e-07  Score=80.25  Aligned_cols=77  Identities=17%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             CCCeEEeecCCcccCCC-----------------CcccccCCCCccCCccccCCC-------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE-----------------HHSTIVSTRHYRAPERYMASD-------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~-----------------~~~~~~~~~~~~~pe~~~~~~-------------------------  187 (351)
                      .++++|+|||++.....                 ......|++.|++||.+....                         
T Consensus       152 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~p~~~~  231 (303)
T 1zy4_A          152 SRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIYPFSTG  231 (303)
T ss_dssp             TSCEEECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHSCCSSH
T ss_pred             CCCEEEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHhccCCc
Confidence            46799999999976431                 223457899999999654210                         


Q ss_pred             ----------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         188 ----------------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       188 ----------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                                            ....+.+.++|.+||..||.+|||+.++++||||.....
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~~  292 (303)
T 1zy4_A          232 MERVNILKKLRSVSIEFPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWLPVKHQ  292 (303)
T ss_dssp             HHHHHHHHHHHSTTCCCCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHSSCSCCCCH
T ss_pred             hhHHHHHHhccccccccCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCCCCcCCCCh
Confidence                                  011134678999999999999999999999999976543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=98.21  E-value=4.5e-07  Score=82.36  Aligned_cols=97  Identities=10%  Similarity=-0.052  Sum_probs=62.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCC-CCCCCCcceeeeeeeEeeCC---eEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGE-KDPNGRHLCVKMLDWFDYHG---HMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h-~~~~g~~~Iv~l~~~f~~~~---~~~lV   76 (351)
                      ++.++.|.++.||+..     +.+++|+.... .....+.+|.++|+.+.. ..-.    |..++......+   .-|+|
T Consensus        25 i~~~~~G~~n~v~~v~-----~~~vlR~~~~~-~~~~~~~~E~~~l~~l~~~~~v~----vP~~~~~~~~~~~~~~~~~v   94 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN-----RDFIFKFPKHS-RGSTNLFNEVNILKRIHNKLPLP----IPEVVFTGMPSETYQMSFAG   94 (304)
T ss_dssp             CCEEEECSSEEEEEST-----TSEEEEEESSH-HHHHHHHHHHHHHHHHTTSSSSC----CCCEEEECCCCSSCSCSCEE
T ss_pred             eEecCCCCcceEEEEC-----CEEEEEecCCc-chHHHHHHHHHHHHHHHhcCCCC----CCceEeecCCCCCCCcceEE
Confidence            3568899999999874     45889997653 334667899999999853 2211    455555443333   45899


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHh
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYA  111 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~  111 (351)
                      ||++ |.+|.+....    .++......++.|+...
T Consensus        95 m~~i~G~~l~~~~~~----~l~~~~~~~~~~~l~~~  126 (304)
T 3sg8_A           95 FTKIKGVPLTPLLLN----NLPKQSQNQAAKDLARF  126 (304)
T ss_dssp             EECCCCEECCHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred             EcccCCeECCccccc----cCCHHHHHHHHHHHHHH
Confidence            9999 6677654332    24555555555555544

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=98.21  E-value=2.2e-07  Score=85.30  Aligned_cols=37  Identities=30%  Similarity=0.406  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      ++.+.++|.+||.+||.+|||+.++|+||||+.....
T Consensus       280 ~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~~  316 (331)
T 4aaa_A          280 SEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQMDGFA  316 (331)
T ss_dssp             CHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHGGGHH
T ss_pred             hHHHHHHHHHHhccCcccCCCHHHHhcCchhccCChh
Confidence            3567899999999999999999999999999765433

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=98.21  E-value=4.6e-07  Score=86.02  Aligned_cols=79  Identities=24%  Similarity=0.361  Sum_probs=61.4

Q ss_pred             CCCCeEEeecCCcccCCCC----cccccCCCCccCCccccCCC-------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPERYMASD-------------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~----~~~~~~~~~~~~pe~~~~~~-------------------------------------  187 (351)
                      +.++++|+|||+|+.....    ....+||+.|+|||.+....                                     
T Consensus       203 ~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~  282 (410)
T 3v8s_A          203 KSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTY  282 (410)
T ss_dssp             TTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHH
T ss_pred             CCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHH
Confidence            3567999999999764332    23578999999999653210                                     


Q ss_pred             ---------------hhhHHHHHHHHHHhhccCCCC--CCChhhhhcCCCCCCCCch
Q psy2006         188 ---------------DEEHRQLFDLISKMLEYEPSE--RISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 ---------------~~~~~~~~~~i~~~L~~~p~~--R~t~~e~l~~~~~~~~~~~  227 (351)
                                     ...++++.++|.+||..+|.+  |++++++++||||+...|.
T Consensus       283 ~~i~~~~~~~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f~~~~w~  339 (410)
T 3v8s_A          283 SKIMNHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWA  339 (410)
T ss_dssp             HHHHTHHHHCCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGGCCSSCC
T ss_pred             HHHHhccccccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcCccccCCCHH
Confidence                           012366889999999999988  9999999999999988764

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=98.20  E-value=7.7e-07  Score=81.92  Aligned_cols=99  Identities=12%  Similarity=0.186  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC-----cccccCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH-----HSTIVST  174 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~-----~~~~~~~  174 (351)
                      .+..++..+...|..++.|.+.+..                 +|+..  ...++||+|||+|+.....     .+...||
T Consensus       163 i~~qia~gl~yLH~~~iiHRDLKp~-----------------NILl~--~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt  223 (329)
T 4aoj_A          163 VASQVAAGMVYLAGLHFVHRDLATR-----------------NCLVG--QGLVVKIGDFGMSRDIYSTDYYRVGGRTMLP  223 (329)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGG-----------------GEEEE--TTTEEEECCCC----------------CCCC
T ss_pred             HHHHHHHHHHHHhcCCeecccccHh-----------------hEEEC--CCCcEEEcccccceeccCCCcceecCccccc
Confidence            4667777777776666655553322                 22221  3456999999999763221     2346799


Q ss_pred             CCccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCC
Q psy2006         175 RHYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSE  208 (351)
Q Consensus       175 ~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~  208 (351)
                      +.|+|||.+...                                              +..-++++.+++.+|+..||.+
T Consensus       224 ~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~li~~cl~~dP~~  303 (329)
T 4aoj_A          224 IRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQGRELERPRACPPEVYAIMRGCWQREPQQ  303 (329)
T ss_dssp             GGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHCCSSTTT
T ss_pred             ccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCcccccHHHHHHHHHHcCcChhH
Confidence            999999954321                                              1122366889999999999999


Q ss_pred             CCChhhhhc
Q psy2006         209 RISLSEALR  217 (351)
Q Consensus       209 R~t~~e~l~  217 (351)
                      |||++|++.
T Consensus       304 RPs~~ei~~  312 (329)
T 4aoj_A          304 RHSIKDVHA  312 (329)
T ss_dssp             SCCHHHHHH
T ss_pred             CcCHHHHHH
Confidence            999999864

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=98.20  E-value=4.4e-07  Score=80.81  Aligned_cols=77  Identities=30%  Similarity=0.398  Sum_probs=58.8

Q ss_pred             ccCCCCeEEeecCCcccC--CCCcccccCCCCccCCccccCCC-------------------------------------
Q psy2006         147 RVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPERYMASD-------------------------------------  187 (351)
Q Consensus       147 d~k~~ni~l~Dfg~s~~~--~~~~~~~~~~~~~~~pe~~~~~~-------------------------------------  187 (351)
                      +-..+.++|+|||++...  ........+|+.|++||.+....                                     
T Consensus       142 ~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~  221 (277)
T 3f3z_A          142 DSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGLYGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIRE  221 (277)
T ss_dssp             SSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCCCCcEEEEecccceeccCccchhccCCCCCccChHHhcccCCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence            345677999999999753  33344568999999999543210                                     


Q ss_pred             ------h----hhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 ------D----EEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 ------~----~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                            .    ..++++.++|.+||..||.+|||+.++|+||||+.
T Consensus       222 ~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~  267 (277)
T 3f3z_A          222 GTFTFPEKDWLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEK  267 (277)
T ss_dssp             CCCCCCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHH
T ss_pred             CCCCCCchhhhcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhc
Confidence                  0    12357889999999999999999999999999854

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=98.19  E-value=5.8e-07  Score=80.88  Aligned_cols=35  Identities=43%  Similarity=0.764  Sum_probs=31.6

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      +++.++|.+||..||.+|||+.++++||||+....
T Consensus       258 ~~~~~li~~~L~~dP~~Rpt~~~~l~hp~~~~~~~  292 (299)
T 2r3i_A          258 EDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTK  292 (299)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             HHHHHHHHHhcCcCcccCCCHHHHhcChhhhcCCC
Confidence            56788999999999999999999999999987654

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=98.18  E-value=4.1e-07  Score=84.57  Aligned_cols=106  Identities=17%  Similarity=0.239  Sum_probs=74.2

Q ss_pred             CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc----ccccccccCCCCeEEeecCCcccCCCC--
Q psy2006          94 LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK----KKREVRRVRRCDIRLIDFGSATFDDEH--  167 (351)
Q Consensus        94 ~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~~i~h~d~k~~ni~l~Dfg~s~~~~~~--  167 (351)
                      ..+++..+..++.|++.|            +.++     +....+|+    .+|...  ..+++||+|||+|+.....  
T Consensus       180 ~~l~~~~~~~~~~qia~g------------l~yL-----H~~~iiHRDLK~~NILl~--~~~~vKi~DFGlar~~~~~~~  240 (353)
T 4ase_A          180 DFLTLEHLICYSFQVAKG------------MEFL-----ASRKCIHRDLAARNILLS--EKNVVKICDFGLARDIYKDPD  240 (353)
T ss_dssp             TCBCHHHHHHHHHHHHHH------------HHHH-----HHTTCCCSCCSGGGEEEC--GGGCEEECCCGGGSCTTTCTT
T ss_pred             ccCCHHHHHHHHHHHHHH------------HHhH-----hhCCeecCccCccceeeC--CCCCEEECcchhhhhcccCCC
Confidence            358899999999999998            3332     23445664    233221  3457999999999863222  


Q ss_pred             ---cccccCCCCccCCccccCC-----------------------------------------------ChhhHHHHHHH
Q psy2006         168 ---HSTIVSTRHYRAPERYMAS-----------------------------------------------DDEEHRQLFDL  197 (351)
Q Consensus       168 ---~~~~~~~~~~~~pe~~~~~-----------------------------------------------~~~~~~~~~~~  197 (351)
                         .....||+.|+|||.+...                                               +...++++.++
T Consensus       241 ~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~~~~~~~~i~~g~~~~~p~~~~~~~~~l  320 (353)
T 4ase_A          241 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQT  320 (353)
T ss_dssp             SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHH
T ss_pred             ceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHHcCCCCCCCccCCHHHHHH
Confidence               2235789999999943211                                               11223678899


Q ss_pred             HHHhhccCCCCCCChhhhhcC
Q psy2006         198 ISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       198 i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      +.+|+..||.+|||+.+++++
T Consensus       321 i~~c~~~dP~~RPt~~eil~~  341 (353)
T 4ase_A          321 MLDCWHGEPSQRPTFSELVEH  341 (353)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHcCcChhHCcCHHHHHHH
Confidence            999999999999999998765

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=98.17  E-value=6.9e-07  Score=87.81  Aligned_cols=80  Identities=20%  Similarity=0.301  Sum_probs=61.0

Q ss_pred             CCCCeEEeecCCcccCCCC---cccccCCCCccCCccccCC---------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPERYMAS---------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~---~~~~~~~~~~~~pe~~~~~---------------------------------------  186 (351)
                      ..++++|+|||+|+.....   ....+||+.|+|||.+...                                       
T Consensus       324 ~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~  403 (543)
T 3c4z_A          324 DDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQ  403 (543)
T ss_dssp             TTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHH
T ss_pred             CCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHH
Confidence            3567999999999763322   3346899999999954321                                       


Q ss_pred             ---------ChhhHHHHHHHHHHhhccCCCCCCC-----hhhhhcCCCCCCCCchh
Q psy2006         187 ---------DDEEHRQLFDLISKMLEYEPSERIS-----LSEALRHPFFDKLPSSV  228 (351)
Q Consensus       187 ---------~~~~~~~~~~~i~~~L~~~p~~R~t-----~~e~l~~~~~~~~~~~~  228 (351)
                               +...++.+.++|.+||..||.+|++     +++++.||||+...|..
T Consensus       404 ~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~i~w~~  459 (543)
T 3c4z_A          404 RVLEQAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRDISWRQ  459 (543)
T ss_dssp             HHHHCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTTCCHHH
T ss_pred             HHhhcccCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCccccCCCHHH
Confidence                     0112356789999999999999996     58899999999988753

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=98.17  E-value=3.1e-07  Score=82.22  Aligned_cols=74  Identities=26%  Similarity=0.452  Sum_probs=49.3

Q ss_pred             CCCeEEeecCCcccCCCC--cccccCCCCccCCccccC----C-------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPERYMA----S-------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~--~~~~~~~~~~~~pe~~~~----~-------------------------------------  186 (351)
                      .++++|+|||+++.....  .....||+.|++||.+..    .                                     
T Consensus       146 ~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~  225 (290)
T 3fme_A          146 LGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQ  225 (290)
T ss_dssp             TCCEEBCCC---------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHH
T ss_pred             CCCEEEeecCCcccccccccccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHH
Confidence            457999999999763332  333579999999997521    0                                     


Q ss_pred             ----------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         187 ----------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       187 ----------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                                ....++++.++|.+||..+|.+|||+.++++||||+.
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~  272 (290)
T 3fme_A          226 VVEEPSPQLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTL  272 (290)
T ss_dssp             HHHSCCCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHH
T ss_pred             HhccCCCCcccccCCHHHHHHHHHHhhcChhhCcCHHHHHhCccccc
Confidence                      0112356889999999999999999999999999954

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=98.16  E-value=9e-07  Score=80.66  Aligned_cols=35  Identities=40%  Similarity=0.640  Sum_probs=31.1

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      +.+.++|.+||..||.+|||+.++++||||+....
T Consensus       271 ~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~~  305 (326)
T 1blx_A          271 ELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLER  305 (326)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             HHHHHHHHHHcCCCcccCCCHHHHhcCccccccch
Confidence            45678999999999999999999999999987653

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=98.16  E-value=7.3e-07  Score=82.32  Aligned_cols=36  Identities=33%  Similarity=0.710  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +++.++|.+||..||.+|||+.++++||||+.....
T Consensus       280 ~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~~  315 (353)
T 2b9h_A          280 PKGIDLLQRMLVFDPAKRITAKEALEHPYLQTYHDP  315 (353)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCCT
T ss_pred             HHHHHHHHHhcCcCcccCCCHHHHhcCccccccCCc
Confidence            456789999999999999999999999999876643

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=98.16  E-value=6.1e-07  Score=85.90  Aligned_cols=81  Identities=26%  Similarity=0.334  Sum_probs=62.1

Q ss_pred             CCCCeEEeecCCcccCCCC----cccccCCCCccCCcccc-----CC---------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPERYM-----AS---------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~----~~~~~~~~~~~~pe~~~-----~~---------------------------------  186 (351)
                      ..++++|+|||+|+.....    ....+||+.|+|||.+.     ..                                 
T Consensus       210 ~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~  289 (437)
T 4aw2_A          210 MNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVET  289 (437)
T ss_dssp             TTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHH
T ss_pred             CCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHH
Confidence            3567999999999653222    23368999999999764     10                                 


Q ss_pred             -------------C---hhhHHHHHHHHHHhhccCCCC--CCChhhhhcCCCCCCCCchhh
Q psy2006         187 -------------D---DEEHRQLFDLISKMLEYEPSE--RISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       187 -------------~---~~~~~~~~~~i~~~L~~~p~~--R~t~~e~l~~~~~~~~~~~~~  229 (351)
                                   +   ...++++.++|.+||+.+|.+  |++++|+++||||+...|..-
T Consensus       290 ~~~i~~~~~~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff~~i~w~~l  350 (437)
T 4aw2_A          290 YGKIMNHKERFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSGIDWDNI  350 (437)
T ss_dssp             HHHHHTHHHHCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGGTTCCTTTG
T ss_pred             HHhhhhccccccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhCCCccCCCCHHHH
Confidence                         0   013467889999999999888  999999999999999887654

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=98.14  E-value=3.7e-07  Score=84.09  Aligned_cols=74  Identities=27%  Similarity=0.435  Sum_probs=43.6

Q ss_pred             CCCeEEeecCCcccCCC-CcccccCCCCccCCccccCCC-----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE-HHSTIVSTRHYRAPERYMASD-----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~-~~~~~~~~~~~~~pe~~~~~~-----------------------------------------  187 (351)
                      .+.++|+|||+++.... ......+|+.|++||.+....                                         
T Consensus       167 ~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~  246 (336)
T 3fhr_A          167 DAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIR  246 (336)
T ss_dssp             TCCEEECCCTTCEEC----------------------CHHHHHHHHHHHHHHHHHHHHSSCCC-----------------
T ss_pred             CceEEEeccccceeccccccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhh
Confidence            45599999999976433 334567899999999543110                                         


Q ss_pred             -----------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 -----------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 -----------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                                 ...++++.++|.+||..||.+|||+.++|+||||+.
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~  293 (336)
T 3fhr_A          247 LGQYGFPNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQ  293 (336)
T ss_dssp             ----CCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHT
T ss_pred             ccccccCchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccc
Confidence                       122457889999999999999999999999999975

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=98.14  E-value=5.5e-07  Score=87.77  Aligned_cols=75  Identities=27%  Similarity=0.386  Sum_probs=58.1

Q ss_pred             CCeEEeecCCcccCC--CCcccccCCCCccCCccccCCC-----------------------------------------
Q psy2006         151 CDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASD-----------------------------------------  187 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~-----------------------------------------  187 (351)
                      .+++|+|||+|+...  .......||+.|+|||.+....                                         
T Consensus       186 ~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~  265 (504)
T 3q5i_A          186 LNIKIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKYY  265 (504)
T ss_dssp             SSEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC
T ss_pred             ccEEEEECCCCEEcCCCCccccccCCcCCCCHHHhccCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCC
Confidence            369999999997633  3345578999999999543210                                         


Q ss_pred             ------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 ------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 ------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                            ...++++.++|.+||.+||.+|||+.++|+||||+...
T Consensus       266 ~~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~  309 (504)
T 3q5i_A          266 FDFNDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKYA  309 (504)
T ss_dssp             CCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHTC
T ss_pred             CCccccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCHhhhhch
Confidence                  01236788999999999999999999999999996543

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=98.14  E-value=6.1e-07  Score=80.27  Aligned_cols=73  Identities=27%  Similarity=0.476  Sum_probs=56.7

Q ss_pred             CCCeEEeecCCcccCC-CCcccccCCCCccCCccccCC------------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPERYMAS------------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~-~~~~~~~~~~~~~~pe~~~~~------------------------------------------  186 (351)
                      .++++|+|||++.... .......|++.|++||.+...                                          
T Consensus       150 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~  229 (284)
T 2vgo_A          150 KGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDL  229 (284)
T ss_dssp             TCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCC
T ss_pred             CCCEEEecccccccCcccccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhcccc
Confidence            4679999999996543 334456799999999954321                                          


Q ss_pred             --ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCC
Q psy2006         187 --DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFD  222 (351)
Q Consensus       187 --~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~  222 (351)
                        +...++++.++|.+||..||.+|||+.++++||||+
T Consensus       230 ~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~~  267 (284)
T 2vgo_A          230 KFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVK  267 (284)
T ss_dssp             CCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTCHHHH
T ss_pred             CCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhCHHHH
Confidence              011235678999999999999999999999999985

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=98.13  E-value=6.9e-07  Score=82.98  Aligned_cols=80  Identities=26%  Similarity=0.326  Sum_probs=60.3

Q ss_pred             CCCeEEeecCCcccCCC----CcccccCCCCccCCccccCCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPERYMASD--------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~----~~~~~~~~~~~~~pe~~~~~~--------------------------------------  187 (351)
                      .++++|+|||+++....    ......||+.|++||.+....                                      
T Consensus       195 ~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~  274 (355)
T 1vzo_A          195 NGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEI  274 (355)
T ss_dssp             TSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHH
T ss_pred             CCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHH
Confidence            56799999999975322    233467999999999654210                                      


Q ss_pred             ------------hhhHHHHHHHHHHhhccCCCCCC-----ChhhhhcCCCCCCCCchhh
Q psy2006         188 ------------DEEHRQLFDLISKMLEYEPSERI-----SLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       188 ------------~~~~~~~~~~i~~~L~~~p~~R~-----t~~e~l~~~~~~~~~~~~~  229 (351)
                                  ...+..+.++|.+||..||.+|+     +++++++||||+...|...
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~~~~~l  333 (355)
T 1vzo_A          275 SRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWDDL  333 (355)
T ss_dssp             HHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHHHH
T ss_pred             HHHHhccCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcCChhHh
Confidence                        01124577899999999999999     9999999999998776543

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=98.13  E-value=9e-07  Score=81.86  Aligned_cols=72  Identities=32%  Similarity=0.428  Sum_probs=55.6

Q ss_pred             CeEEeecCCcccCC---CCcccccCCCCccCCccccCC-------------------------------C----------
Q psy2006         152 DIRLIDFGSATFDD---EHHSTIVSTRHYRAPERYMAS-------------------------------D----------  187 (351)
Q Consensus       152 ni~l~Dfg~s~~~~---~~~~~~~~~~~~~~pe~~~~~-------------------------------~----------  187 (351)
                      .++|+|||+++...   ......+||+.|++||.+...                               .          
T Consensus       158 ~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~  237 (342)
T 2qr7_A          158 SIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGS  237 (342)
T ss_dssp             GEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHcc
Confidence            48999999997532   234456899999999943210                               0          


Q ss_pred             ----------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 ----------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 ----------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                                ...++++.++|.+||..||.+|+|+.++++||||..
T Consensus       238 ~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~~~~  283 (342)
T 2qr7_A          238 GKFSLSGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVH  283 (342)
T ss_dssp             CCCCCCSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHT
T ss_pred             CCcccCccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCeecC
Confidence                      123467889999999999999999999999999954

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=98.12  E-value=7.3e-07  Score=79.27  Aligned_cols=75  Identities=21%  Similarity=0.390  Sum_probs=50.0

Q ss_pred             CCCeEEeecCCcccCCCC--cccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~--~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      .++++|+|||++......  .....+++.|++||.+....                                        
T Consensus       147 ~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~  226 (276)
T 2h6d_A          147 HMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGG  226 (276)
T ss_dssp             TSCEEECCCCGGGCCCC-------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHC
T ss_pred             CCCEEEeecccccccCCCcceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcC
Confidence            457999999999764332  34467899999999654321                                        


Q ss_pred             -----hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         188 -----DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       188 -----~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                           ......+.++|.+||..||.+|||+.++++||||+..
T Consensus       227 ~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h~~~~~~  268 (276)
T 2h6d_A          227 VFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQD  268 (276)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             cccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhChhhccC
Confidence                 0113467789999999999999999999999999653

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=98.11  E-value=6.3e-07  Score=83.14  Aligned_cols=32  Identities=28%  Similarity=0.538  Sum_probs=29.4

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                      +++.++|.+||.+||.+|||++++|+||||+.
T Consensus       299 ~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~  330 (360)
T 3eqc_A          299 LEFQDFVNKCLIKNPAERADLKQLMVHAFIKR  330 (360)
T ss_dssp             HHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHH
T ss_pred             HHHHHHHHHHhhcChhhCCCHHHHhhChHhhc
Confidence            46789999999999999999999999999954

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=98.11  E-value=1.5e-06  Score=80.07  Aligned_cols=79  Identities=22%  Similarity=0.373  Sum_probs=61.6

Q ss_pred             CCCeEEeecCCcccC-CCCcccccCCCCccCCccccCC-C----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD-DEHHSTIVSTRHYRAPERYMAS-D----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~-~~~~~~~~~~~~~~~pe~~~~~-~----------------------------------------  187 (351)
                      .++++|+|||++... ........+++.|++||.+... .                                        
T Consensus       188 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~i~~  267 (348)
T 2pml_X          188 NGRVKLSDFGESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVELFNNIRT  267 (348)
T ss_dssp             TSCEEECCCTTCEECBTTEECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHHHHHHTS
T ss_pred             CCcEEEeccccccccccccccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHhc
Confidence            467999999999763 3344556899999999965422 0                                        


Q ss_pred             -------------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         188 -------------------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       188 -------------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                                               ...+.++.++|.+||..||.+|||+.++++||||+...+..
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~~~~~  333 (348)
T 2pml_X          268 KNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADTNIED  333 (348)
T ss_dssp             CCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTCCHHH
T ss_pred             cCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCCCHHH
Confidence                                     11235678999999999999999999999999998877544

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=98.11  E-value=2.2e-06  Score=78.13  Aligned_cols=100  Identities=15%  Similarity=0.166  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC-----CCcccccCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD-----EHHSTIVST  174 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~-----~~~~~~~~~  174 (351)
                      .+..++..+...+.+++.|.+.+..                 +|...  ...++||+|||+|+...     .......||
T Consensus       150 i~~qia~gl~yLH~~~iiHRDLK~~-----------------NILl~--~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt  210 (308)
T 4gt4_A          150 LVAQIAAGMEYLSSHHVVHKDLATR-----------------NVLVY--DKLNVKISDLGLFREVYAADYYKLLGNSLLP  210 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGG-----------------GEEEC--GGGCEEECCSCCBCGGGGGGCBCSSSSSCBC
T ss_pred             HHHHHHHHHHHHHhCCCCCCCcccc-----------------ceEEC--CCCCEEECCcccceeccCCCceeEecccccC
Confidence            4667777777776666655553322                 22211  23569999999997521     123346799


Q ss_pred             CCccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCC
Q psy2006         175 RHYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSE  208 (351)
Q Consensus       175 ~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~  208 (351)
                      +.|+|||.+...                                              +...++++.+++.+|+..||.+
T Consensus       211 ~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~C~~~dP~~  290 (308)
T 4gt4_A          211 IRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRNRQVLPCPDDCPAWVYALMIECWNEFPSR  290 (308)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             CcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCcccchHHHHHHHHHHcCCChhH
Confidence            999999943211                                              1122356889999999999999


Q ss_pred             CCChhhhhcC
Q psy2006         209 RISLSEALRH  218 (351)
Q Consensus       209 R~t~~e~l~~  218 (351)
                      |||+.+++.+
T Consensus       291 RPs~~ei~~~  300 (308)
T 4gt4_A          291 RPRFKDIHSR  300 (308)
T ss_dssp             SCCHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence            9999997653

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=98.09  E-value=2.5e-06  Score=77.32  Aligned_cols=37  Identities=27%  Similarity=0.644  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      ++++.++|.+||..||.+|||++++++||||+...++
T Consensus       279 ~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~p  315 (320)
T 2i6l_A          279 SREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSFP  315 (320)
T ss_dssp             CHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC-
T ss_pred             hHHHHHHHHHHcCCCccccCCHHHHhCCcccccccCc
Confidence            3568899999999999999999999999999765543

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=98.08  E-value=1.9e-06  Score=78.24  Aligned_cols=75  Identities=31%  Similarity=0.458  Sum_probs=53.1

Q ss_pred             CCeEEeecCCcccCCCC-----cccccCCCCccCCccccCC------------C--------------------------
Q psy2006         151 CDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMAS------------D--------------------------  187 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~~------------~--------------------------  187 (351)
                      +.++|+|||+++.....     .....|++.|++||.+...            .                          
T Consensus       163 ~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~  242 (313)
T 3cek_A          163 GMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQI  242 (313)
T ss_dssp             TEEEECCCSSSCC--------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred             CeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhH
Confidence            66999999999764322     2345789999999976430            0                          


Q ss_pred             --------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 --------------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 --------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                                          ....+++.++|.+||..||.+|||+.++++||||+...
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~~~~~~  300 (313)
T 3cek_A          243 INQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQT  300 (313)
T ss_dssp             CSHHHHHHHHHCTTSCCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHCC-
T ss_pred             HHHHHHHHHHHhcccccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcCccccCCC
Confidence                                00124678999999999999999999999999997644

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=98.06  E-value=2e-06  Score=82.14  Aligned_cols=74  Identities=30%  Similarity=0.378  Sum_probs=53.3

Q ss_pred             CCCeEEeecCCcccCCCC-------cccccCCCCccCCccccC-------C-----------------------C-----
Q psy2006         150 RCDIRLIDFGSATFDDEH-------HSTIVSTRHYRAPERYMA-------S-----------------------D-----  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-------~~~~~~~~~~~~pe~~~~-------~-----------------------~-----  187 (351)
                      ..+++|+|||+|+.....       .....||+.|+|||.+..       .                       .     
T Consensus       164 ~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~  243 (434)
T 2rio_A          164 NLRILISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDK  243 (434)
T ss_dssp             SCEEEECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCST
T ss_pred             ceEEEEcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCc
Confidence            346899999999764332       224579999999996532       0                       0     


Q ss_pred             ----------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 ----------------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 ----------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                                            ...++++.++|.+||..||.+|||+.++++||||..
T Consensus       244 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp~f~~  301 (434)
T 2rio_A          244 YSRESNIIRGIFSLDEMKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWP  301 (434)
T ss_dssp             TTHHHHHHHTCCCCCCCTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSC
T ss_pred             hhhHHHHhcCCCCcccccccccccchHHHHHHHHHHhhCChhhCCCHHHHHhCCccCC
Confidence                                  012367889999999999999999999999999965

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=98.05  E-value=2.2e-06  Score=76.97  Aligned_cols=77  Identities=34%  Similarity=0.527  Sum_probs=58.5

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccC---------C-------------------------C------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMA---------S-------------------------D------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~---------~-------------------------~------  187 (351)
                      .++++|+|||++....  .......+++.|++||.+..         .                         .      
T Consensus       160 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~  239 (298)
T 1phk_A          160 DMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLR  239 (298)
T ss_dssp             TCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             CCcEEEecccchhhcCCCcccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHH
Confidence            4679999999997633  33445678999999995420         0                         0      


Q ss_pred             --------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         188 --------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       188 --------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                                    ...++.+.++|.+||..||.+|||+.++++||||+....
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~~  292 (298)
T 1phk_A          240 MIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQYVV  292 (298)
T ss_dssp             HHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTTC-
T ss_pred             HHhcCCcccCcccccccCHHHHHHHHHHccCCcccCCCHHHHHhChHhhhccc
Confidence                          112356889999999999999999999999999987553

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=98.05  E-value=1.5e-06  Score=81.60  Aligned_cols=35  Identities=26%  Similarity=0.516  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      +++.+||.+||.+||.+|||+.++|+||||+....
T Consensus       308 ~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~~~  342 (389)
T 3gni_B          308 PHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKR  342 (389)
T ss_dssp             HHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC--
T ss_pred             HHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHHhh
Confidence            34778999999999999999999999999976553

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=98.04  E-value=1e-06  Score=81.74  Aligned_cols=76  Identities=24%  Similarity=0.301  Sum_probs=58.2

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC-------------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS-------------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~-------------------------------------------  186 (351)
                      .++++|+|||+++.... .....||+.|++||.+...                                           
T Consensus       190 ~~~~kL~DfG~a~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~  268 (348)
T 1u5q_A          190 PGLVKLGDFGSASIMAP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQN  268 (348)
T ss_dssp             TTEEEECCCTTCBSSSS-BCCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS
T ss_pred             CCCEEEeeccCceecCC-CCcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhc
Confidence            46799999999976543 3456899999999965310                                           


Q ss_pred             ------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         187 ------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       187 ------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                            ....++.+.++|.+||..+|.+|||+.++++||||.....
T Consensus       269 ~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~~~~~~  314 (348)
T 1u5q_A          269 ESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRERP  314 (348)
T ss_dssp             CCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSCCC
T ss_pred             CCCCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhChhhhccCC
Confidence                  0011345789999999999999999999999999865443

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=98.03  E-value=1.5e-06  Score=78.89  Aligned_cols=78  Identities=23%  Similarity=0.371  Sum_probs=59.0

Q ss_pred             CCCeEEeecCCcccCCCC---cccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~---~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      .++++|+|||++......   .....|++.|++||.+....                                       
T Consensus       161 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~  240 (314)
T 3com_A          161 EGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTN  240 (314)
T ss_dssp             TCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS
T ss_pred             CCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcC
Confidence            467999999999653322   33457899999999543210                                       


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                              ...++++.++|.+||..||.+|||+.++++||||......
T Consensus       241 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~~~~~~~~~~  288 (314)
T 3com_A          241 PPPTFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVRSAKGV  288 (314)
T ss_dssp             CCCCCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHTCCCG
T ss_pred             CCcccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhcCCcc
Confidence                    0113568899999999999999999999999999776543

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=98.02  E-value=9.5e-07  Score=80.57  Aligned_cols=80  Identities=23%  Similarity=0.428  Sum_probs=56.0

Q ss_pred             CCCeEEeecCCcccCCCC---cccccCCCCccCCccccCC---------------------------------C------
Q psy2006         150 RCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPERYMAS---------------------------------D------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~---~~~~~~~~~~~~pe~~~~~---------------------------------~------  187 (351)
                      .++++|+|||++......   .....|++.|++||.+...                                 .      
T Consensus       165 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~  244 (326)
T 2x7f_A          165 NAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALF  244 (326)
T ss_dssp             TCCEEECCCTTTC-------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH
T ss_pred             CCCEEEeeCcCceecCcCccccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHH
Confidence            567999999999764322   3446789999999976410                                 0      


Q ss_pred             ------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         188 ------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       188 ------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                                  ...++.+.++|.+||..||.+|||+.++++||||...+....
T Consensus       245 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~hp~~~~~~~~~~  298 (326)
T 2x7f_A          245 LIPRNPAPRLKSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQPNERQ  298 (326)
T ss_dssp             HHHHSCCCCCSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTSHHHHCCTTHHH
T ss_pred             HhhcCccccCCccccCHHHHHHHHHHhccChhhCCCHHHHhhChHHhhCccccc
Confidence                        011256789999999999999999999999999988765433

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=98.02  E-value=1.5e-06  Score=78.12  Aligned_cols=75  Identities=29%  Similarity=0.432  Sum_probs=57.3

Q ss_pred             CCCeEEeecCCcccCC---CCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~---~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||++....   .......||+.|++||.+...                                        
T Consensus       151 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~  230 (294)
T 2rku_A          151 DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN  230 (294)
T ss_dssp             TCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTT
T ss_pred             CCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhc
Confidence            4679999999997632   223446789999999954321                                        


Q ss_pred             ----ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         187 ----DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       187 ----~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                          .....+.+.++|.+||..||.+|||++++++||||...
T Consensus       231 ~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~~~~  272 (294)
T 2rku_A          231 EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSG  272 (294)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTS
T ss_pred             cCCCccccCHHHHHHHHHHcccChhhCcCHHHHhhChheecC
Confidence                01123567899999999999999999999999999653

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=98.01  E-value=1.8e-06  Score=82.06  Aligned_cols=80  Identities=30%  Similarity=0.342  Sum_probs=60.3

Q ss_pred             CCCCeEEeecCCcccCCCC----cccccCCCCccCCccccC-------C----------------------------C--
Q psy2006         149 RRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPERYMA-------S----------------------------D--  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~----~~~~~~~~~~~~pe~~~~-------~----------------------------~--  187 (351)
                      ..++++|+|||+|+.....    ....+||+.|+|||.+..       .                            .  
T Consensus       197 ~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~  276 (412)
T 2vd5_A          197 RCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTA  276 (412)
T ss_dssp             TTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHH
T ss_pred             CCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHH
Confidence            3568999999999764332    224689999999996641       0                            0  


Q ss_pred             -------------------hhhHHHHHHHHHHhhccCCCCC---CChhhhhcCCCCCCCCchhh
Q psy2006         188 -------------------DEEHRQLFDLISKMLEYEPSER---ISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       188 -------------------~~~~~~~~~~i~~~L~~~p~~R---~t~~e~l~~~~~~~~~~~~~  229 (351)
                                         ...++++.++|.+||. +|.+|   ++++++++||||....|..-
T Consensus       277 ~~~~~i~~~~~~~~~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~~i~w~~l  339 (412)
T 2vd5_A          277 ETYGKIVHYKEHLSLPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHPFFFGLDWDGL  339 (412)
T ss_dssp             HHHHHHHTHHHHCCCC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGGTTCCSTTS
T ss_pred             HHHHHHHhcccCcCCCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCcCCCCHHHH
Confidence                               0123568899999999 99998   58999999999999887644

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=98.00  E-value=3.3e-06  Score=75.65  Aligned_cols=76  Identities=21%  Similarity=0.273  Sum_probs=56.0

Q ss_pred             CCCeEEeecCCcccCCC---CcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~---~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .+.++|+|||++.....   ......|++.|++||.+...                                        
T Consensus       159 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~  238 (295)
T 2clq_A          159 SGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKV  238 (295)
T ss_dssp             TCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHH
T ss_pred             CCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhh
Confidence            56799999999976432   23346789999999954210                                        


Q ss_pred             ---------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         187 ---------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       187 ---------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                               ....++++.++|.+||..||.+|||+.+++.||||+...
T Consensus       239 ~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~  286 (295)
T 2clq_A          239 GMFKVHPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLKVSS  286 (295)
T ss_dssp             HHHCCCCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTSGGGCC--
T ss_pred             ccccccccccccCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhhcc
Confidence                     011235677999999999999999999999999997644

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=97.99  E-value=1.5e-06  Score=79.80  Aligned_cols=76  Identities=29%  Similarity=0.416  Sum_probs=57.5

Q ss_pred             CCCeEEeecCCcccCC---CCcccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~---~~~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      .++++|+|||+++...   .......||+.|++||.+....                                       
T Consensus       177 ~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~  256 (335)
T 2owb_A          177 DLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKN  256 (335)
T ss_dssp             TCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHT
T ss_pred             CCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcC
Confidence            4679999999997532   2234467999999999543210                                       


Q ss_pred             -----hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 -----DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 -----~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                           ....+.+.++|.+||..||.+|||+.++++||||....
T Consensus       257 ~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~~~~~~~~  299 (335)
T 2owb_A          257 EYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGY  299 (335)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSC
T ss_pred             CCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCccccCCC
Confidence                 11235678999999999999999999999999996543

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=97.99  E-value=1.4e-06  Score=78.43  Aligned_cols=78  Identities=28%  Similarity=0.460  Sum_probs=55.6

Q ss_pred             CCCeEEeecCCcccC---CCCcccccCCCCccCCcccc-----CC-----------------------------------
Q psy2006         150 RCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYM-----AS-----------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~-----~~-----------------------------------  186 (351)
                      .++++|+|||++...   ........||+.|++||.+.     ..                                   
T Consensus       153 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~  232 (302)
T 2j7t_A          153 EGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLL  232 (302)
T ss_dssp             TSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHH
T ss_pred             CCCEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence            467999999997531   11233457899999999652     10                                   


Q ss_pred             ------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         187 ------------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       187 ------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                                  ....+..+.++|.+||..||.+|||+.++++||||....+.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~~~  285 (302)
T 2j7t_A          233 KIAKSDPPTLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSITSN  285 (302)
T ss_dssp             HHHHSCCCCCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTSTTTTTCCCC
T ss_pred             HHhccCCcccCCccccCHHHHHHHHHHcccChhhCCCHHHHhcChHHhhhccc
Confidence                        00112467899999999999999999999999999887753

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=97.98  E-value=1.5e-06  Score=79.25  Aligned_cols=76  Identities=33%  Similarity=0.586  Sum_probs=57.5

Q ss_pred             CCCeEEeecCCcccCCCC--cccccCCCCccCCccccC---C-----------------------------C--------
Q psy2006         150 RCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPERYMA---S-----------------------------D--------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~--~~~~~~~~~~~~pe~~~~---~-----------------------------~--------  187 (351)
                      ...++|+|||+++.....  .....||+.|++||.+..   .                             .        
T Consensus       153 ~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~  232 (322)
T 2ycf_A          153 DCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQI  232 (322)
T ss_dssp             SCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHH
T ss_pred             CCeEEEccCccceecccccccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHH
Confidence            345999999999765433  234579999999996420   0                             0        


Q ss_pred             ------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 ------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 ------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                                  ...++++.++|.+||..||.+|||+.++++||||+...
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h~~~~~~~  282 (322)
T 2ycf_A          233 TSGKYNFIPEVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQDED  282 (322)
T ss_dssp             HHTCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGCCHH
T ss_pred             HhCccccCchhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhCcCcCCHH
Confidence                        01135678999999999999999999999999997644

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=97.98  E-value=8.2e-07  Score=84.32  Aligned_cols=75  Identities=19%  Similarity=0.314  Sum_probs=59.7

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccc----------cCC---------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERY----------MAS---------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~----------~~~---------------------------------  186 (351)
                      .++++|+|||+++.........+| +.|++||.+          ...                                 
T Consensus       247 ~~~~kL~DFG~a~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~  325 (413)
T 3dzo_A          247 RGGVFLTGFEHLVRDGASAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGG  325 (413)
T ss_dssp             TCCEEECCGGGCEETTEEECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSC
T ss_pred             CCeEEEEeccceeecCCccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhh
Confidence            456999999999876666666778 999999987          210                                 


Q ss_pred             -------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         187 -------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       187 -------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                             ....++++.++|.+||..||.+|||+.++++||||+.+.
T Consensus       326 ~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~~~~~~~~  371 (413)
T 3dzo_A          326 SEWIFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETPEYEQLR  371 (413)
T ss_dssp             SGGGGSSCCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             HHHHHhhcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHHHHH
Confidence                   011236788999999999999999999999999986543

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=97.98  E-value=2.1e-06  Score=77.90  Aligned_cols=98  Identities=13%  Similarity=0.199  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC-----cccccCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH-----HSTIVST  174 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~-----~~~~~~~  174 (351)
                      .++.++..+...|.+++.|.+.+...                 |...  +..++||+|||+|+.....     .....||
T Consensus       133 i~~qia~gl~yLH~~~iiHRDlKp~N-----------------ILl~--~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt  193 (299)
T 4asz_A          133 IAQQIAAGMVYLASQHFVHRDLATRN-----------------CLVG--ENLLVKIGDFGMSRDVYSTDYYRVGGHTMLP  193 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGG-----------------EEEC--GGGCEEECCCSCHHHHTGGGCEEETTTEEEC
T ss_pred             HHHHHHHHHHHHHhCCcccCccCHhh-----------------EEEC--CCCcEEECCcccceecCCCCceeecCceecC
Confidence            46677777777766666665533322                 2211  2356999999999753222     1224689


Q ss_pred             CCccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCC
Q psy2006         175 RHYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSE  208 (351)
Q Consensus       175 ~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~  208 (351)
                      +.|+|||.+...                                              +..-++++.+++.+|+..||.+
T Consensus       194 ~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~  273 (299)
T 4asz_A          194 IRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRVLQRPRTCPQEVYELMLGCWQREPHM  273 (299)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             hhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCChhH
Confidence            999999943211                                              1122367889999999999999


Q ss_pred             CCChhhhh
Q psy2006         209 RISLSEAL  216 (351)
Q Consensus       209 R~t~~e~l  216 (351)
                      |||++++.
T Consensus       274 RPs~~~i~  281 (299)
T 4asz_A          274 RKNIKGIH  281 (299)
T ss_dssp             SCCHHHHH
T ss_pred             CcCHHHHH
Confidence            99999873

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=97.97  E-value=1.7e-06  Score=78.07  Aligned_cols=76  Identities=26%  Similarity=0.389  Sum_probs=57.4

Q ss_pred             CCCeEEeecCCcccCCC-----CcccccCCCCccCCccccCCC-------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPERYMASD-------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~-----~~~~~~~~~~~~~pe~~~~~~-------------------------------------  187 (351)
                      .++++|+|||++.....     ......||+.|++||.+....                                     
T Consensus       145 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~  224 (305)
T 2wtk_C          145 GGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFEN  224 (305)
T ss_dssp             TCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHH
T ss_pred             CCcEEeeccccccccCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence            46799999999976322     123456899999999654210                                     


Q ss_pred             ---------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 ---------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 ---------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                               ....+.+.++|.+||..||.+|||+.++++||||+...
T Consensus       225 i~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~  271 (305)
T 2wtk_C          225 IGKGSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKH  271 (305)
T ss_dssp             HHHCCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSCC
T ss_pred             HhcCCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcCcccccCC
Confidence                     01124578999999999999999999999999996644

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=97.95  E-value=3.1e-06  Score=76.90  Aligned_cols=26  Identities=8%  Similarity=0.134  Sum_probs=22.5

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      +.+.+++.+|+..||++|||+.++++
T Consensus       265 ~~l~~li~~cl~~dP~~RPt~~ei~~  290 (303)
T 3hmm_A          265 RVMAKIMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             HHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHcccCHhHCcCHHHHHH
Confidence            35678999999999999999998764

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=97.92  E-value=5.8e-07  Score=80.60  Aligned_cols=75  Identities=36%  Similarity=0.577  Sum_probs=56.5

Q ss_pred             CCCeEEeecCCcccCCC--CcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~--~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      ..+++|+|||++.....  ......+++.|++||.+....                                        
T Consensus       160 ~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~  239 (287)
T 2wei_A          160 DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKY  239 (287)
T ss_dssp             TCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTTCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC
T ss_pred             cccEEEeccCcceeecCCCccccccCcccccChHHhcCCCCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCC
Confidence            45699999999976332  234456888999999543210                                        


Q ss_pred             -------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         188 -------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       188 -------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                             ...++++.++|.+||..||.+|||+.++++||||+..
T Consensus       240 ~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~~  283 (287)
T 2wei_A          240 AFDLPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKY  283 (287)
T ss_dssp             CCCSGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHHH
T ss_pred             CCCchhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcCHHHhcc
Confidence                   1123568899999999999999999999999998643

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=97.92  E-value=2.3e-06  Score=77.18  Aligned_cols=74  Identities=30%  Similarity=0.422  Sum_probs=56.3

Q ss_pred             CCCeEEeecCCcccCCC---CcccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~---~~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      .++++|+|||++.....   ......|++.|++||.+....                                       
T Consensus       155 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~  234 (303)
T 3a7i_A          155 HGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKN  234 (303)
T ss_dssp             TSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHS
T ss_pred             CCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcC
Confidence            46799999999965322   234467899999999643220                                       


Q ss_pred             ------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 ------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 ------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                            ...+..+.++|.+||..+|.+|||+.++++||||..
T Consensus       235 ~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~  276 (303)
T 3a7i_A          235 NPPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILR  276 (303)
T ss_dssp             CCCCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHHHHH
T ss_pred             CCCCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhChhhhc
Confidence                  011345789999999999999999999999999853

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=97.90  E-value=1.4e-06  Score=77.67  Aligned_cols=73  Identities=26%  Similarity=0.436  Sum_probs=53.1

Q ss_pred             CCeEEeecCCcccCC--CCcccccCCCCccCCccccCCC-----------------------------------------
Q psy2006         151 CDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASD-----------------------------------------  187 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~-----------------------------------------  187 (351)
                      ..++|+|||++....  .......+++.|++||.+....                                         
T Consensus       149 ~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~  228 (283)
T 3bhy_A          149 PRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNY  228 (283)
T ss_dssp             CCEEECCCTTCEECC--------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCC
T ss_pred             CceEEEecccceeccCCCcccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhccc
Confidence            369999999997633  2334467899999999543210                                         


Q ss_pred             -------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 -------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 -------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                             ...++.+.++|.+||..||.+|||+.++++||||+.
T Consensus       229 ~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~  271 (283)
T 3bhy_A          229 DFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKA  271 (283)
T ss_dssp             CCCHHHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHH
T ss_pred             CCcchhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHH
Confidence                   011245789999999999999999999999999854

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=97.89  E-value=2.3e-06  Score=78.12  Aligned_cols=74  Identities=27%  Similarity=0.381  Sum_probs=42.6

Q ss_pred             CCCeEEeecCCcccCCCC--cccccCCCCccCCccccC----C--------------------------C----------
Q psy2006         150 RCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPERYMA----S--------------------------D----------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~--~~~~~~~~~~~~pe~~~~----~--------------------------~----------  187 (351)
                      .++++|+|||+++.....  .....||+.|++||.+..    .                          .          
T Consensus       162 ~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~  241 (327)
T 3aln_A          162 SGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQ  241 (327)
T ss_dssp             TTEEEECCCSSSCC------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CC
T ss_pred             CCCEEEccCCCceecccccccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHH
Confidence            466999999999764332  233478999999997620    0                          0          


Q ss_pred             --------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 --------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 --------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                                    ...++++.++|.+||..||.+|||+.++++||||..
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~  291 (327)
T 3aln_A          242 VVKGDPPQLSNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILM  291 (327)
T ss_dssp             CCCSCCCCCCCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHH
T ss_pred             HhcCCCCCCCCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhChHHHH
Confidence                          012457889999999999999999999999999853

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=97.88  E-value=3.1e-06  Score=76.08  Aligned_cols=35  Identities=34%  Similarity=0.579  Sum_probs=28.4

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      +++.++|.+||..||.+|||+.++++||||+....
T Consensus       262 ~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~~~  296 (303)
T 2vwi_A          262 KSFRKMISLCLQKDPEKRPTAAELLRHKFFQKAKN  296 (303)
T ss_dssp             HHHHHHHHHHCCSSGGGSCCHHHHHTSTTC-----
T ss_pred             HHHHHHHHHHccCChhhCcCHHHHhhChhhhcCCC
Confidence            46788999999999999999999999999977553

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=97.86  E-value=2e-05  Score=72.26  Aligned_cols=64  Identities=16%  Similarity=0.390  Sum_probs=49.9

Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCC--------------------------------------------
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD--------------------------------------------  187 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~--------------------------------------------  187 (351)
                      +++|+|||+|+.....  ..+||+.|++||.+....                                            
T Consensus       220 ~vkL~DFG~a~~~~~~--~~~gt~~y~aPE~~~g~~~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  297 (336)
T 2vuw_A          220 QVSIIDYTLSRLERDG--IVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFK  297 (336)
T ss_dssp             EEEECCCTTCBEEETT--EEECCCCTTCSGGGCCCSSHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCS
T ss_pred             eEEEeeccccEecCCC--cEEEeecccChhhhcCCCccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccC
Confidence            6899999999865432  358999999999764321                                            


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhh-cCCCCC
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEAL-RHPFFD  222 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l-~~~~~~  222 (351)
                              ...++++.+||.+||.+|     |+.++| +||||+
T Consensus       298 ~~~~~~~~~~~s~~~~dli~~~L~~d-----sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          298 TKCNTPAMKQIKRKIQEFHRTMLNFS-----SATDLLCQHSLFK  336 (336)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHGGGSS-----SHHHHHHHCGGGC
T ss_pred             cccchhhhhhcCHHHHHHHHHHhccC-----CHHHHHhcCCCcC
Confidence                    012456889999999987     999999 999984

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=97.85  E-value=1.4e-05  Score=72.60  Aligned_cols=29  Identities=10%  Similarity=0.200  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCC
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHP  219 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~  219 (351)
                      ...+.++|.+||.+||.+|+|++|+|+||
T Consensus       276 ~~~l~~ll~~~L~~dP~~R~s~~ell~h~  304 (319)
T 4euu_A          276 QVLLTPVLANILEADQEKCWGFDQFFAET  304 (319)
T ss_dssp             HHHHHHHHHHHSCCCTTTSCCHHHHHHHH
T ss_pred             HHHhHHHHHHhccCChhhhccHHHhhhcc
Confidence            34678999999999999999999999986

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=97.83  E-value=5.5e-06  Score=75.04  Aligned_cols=74  Identities=22%  Similarity=0.296  Sum_probs=50.2

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccCC----------------------------------C------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMAS----------------------------------D------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~----------------------------------~------  187 (351)
                      .++++|+|||++....  .......+++.|++||.+...                                  .      
T Consensus       161 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~  240 (318)
T 2dyl_A          161 RGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLT  240 (318)
T ss_dssp             TSCEEECCCTTC--------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHH
T ss_pred             CCCEEEEECCCchhccCCccccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHH
Confidence            4679999999996532  223345789999999976310                                  0      


Q ss_pred             -------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         188 -------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       188 -------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                                   ...++++.++|.+||..||.+|||+.++++||||+.
T Consensus       241 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~  289 (318)
T 2dyl_A          241 KVLQEEPPLLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKR  289 (318)
T ss_dssp             HHHHSCCCCCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHH
T ss_pred             HHhccCCCCCCccCCCCHHHHHHHHHHccCChhHCcCHHHHhhCHHHHh
Confidence                         011356889999999999999999999999999854

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=97.79  E-value=5.9e-06  Score=73.42  Aligned_cols=74  Identities=27%  Similarity=0.399  Sum_probs=55.6

Q ss_pred             CCCeEEeecCCcccCCCC---cccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~---~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||+++.....   .....|++.|++||.+...                                        
T Consensus       152 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~  231 (279)
T 2w5a_A          152 KQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREG  231 (279)
T ss_dssp             SSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHT
T ss_pred             CCCEEEecCchheeeccccccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhc
Confidence            467999999999764333   2345789999999954321                                        


Q ss_pred             -----ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         187 -----DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       187 -----~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                           ....++++.++|.+||..+|.+|||+.++++++|+..
T Consensus       232 ~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~  273 (279)
T 2w5a_A          232 KFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLILE  273 (279)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCG
T ss_pred             ccccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhh
Confidence                 0112356889999999999999999999999999865

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=97.78  E-value=2.1e-05  Score=78.80  Aligned_cols=36  Identities=17%  Similarity=0.115  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         190 EHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       190 ~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      .++.+.++|.+||.+||.+|||+.+++.||||+.+.
T Consensus       270 ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~l~  305 (676)
T 3qa8_A          270 LAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQALD  305 (676)
T ss_dssp             GHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHHHH
T ss_pred             hhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHHHH
Confidence            357799999999999999999999999999996543

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=97.76  E-value=1.9e-05  Score=70.37  Aligned_cols=65  Identities=20%  Similarity=0.276  Sum_probs=52.1

Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCC----------------------------------------------
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS----------------------------------------------  186 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~----------------------------------------------  186 (351)
                      ++|+|||+|+..........||+.|++||.+...                                              
T Consensus       168 ~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~  247 (287)
T 4f0f_A          168 AKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEGL  247 (287)
T ss_dssp             EEECCCTTCBCCSSCEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSCC
T ss_pred             EEeCCCCccccccccccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccCC
Confidence            8999999998776667778899999999976211                                              


Q ss_pred             ----ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 ----DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 ----~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                          ....++++.++|.+||..||.+|||+.++++
T Consensus       248 ~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  282 (287)
T 4f0f_A          248 RPTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVK  282 (287)
T ss_dssp             CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                0112246789999999999999999999864

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.74  E-value=0.00052  Score=60.52  Aligned_cols=80  Identities=14%  Similarity=0.022  Sum_probs=60.5

Q ss_pred             ccCcccc-eEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-C
Q psy2006           4 LNCVASN-HVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-G   81 (351)
Q Consensus         4 iG~G~~g-~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-g   81 (351)
                      +..|..| .||+......++.+.+|+-...  ....+.+|..+|+.|.. .-.    |.+++.+....+..++|||++ |
T Consensus        32 ~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~--~~~~~~~E~~~l~~l~~-~vP----VP~v~~~~~~~~~~~lvme~l~G  104 (272)
T 4gkh_A           32 DNVGQSGATIYRLYGKPNAPELFLKHGKGS--VANDVTDEMVRLNWLTA-FMP----LPTIKHFIRTPDDAWLLTTAIPG  104 (272)
T ss_dssp             EECSSSSCEEEEEECCTTCCCEEEEEEETH--HHHHHHHHHHHHHHHTT-TSC----CCCEEEEEEETTEEEEEEECCCS
T ss_pred             ccCCCcCCeEEEEEecCCCeEEEEEECCCC--CHhHHHHHHHHHHHhcc-CCC----cCeEEEEEEECCeEEEEEEeeCC
Confidence            4445555 6898877667788999998753  24567889999999963 222    889999999999999999999 6


Q ss_pred             CCHHHHHHh
Q psy2006          82 LSVFDFLKE   90 (351)
Q Consensus        82 ~sL~~~l~~   90 (351)
                      .++.+....
T Consensus       105 ~~~~~~~~~  113 (272)
T 4gkh_A          105 KTAFQVLEE  113 (272)
T ss_dssp             EEHHHHHHH
T ss_pred             ccccccccC
Confidence            677766544

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=97.70  E-value=4.7e-05  Score=67.96  Aligned_cols=70  Identities=11%  Similarity=0.121  Sum_probs=51.2

Q ss_pred             cCCCCeEEeecCCcccCCCC----------cccccCCCCccCCccccCCC------------------------------
Q psy2006         148 VRRCDIRLIDFGSATFDDEH----------HSTIVSTRHYRAPERYMASD------------------------------  187 (351)
Q Consensus       148 ~k~~ni~l~Dfg~s~~~~~~----------~~~~~~~~~~~~pe~~~~~~------------------------------  187 (351)
                      -..+.++|+|||+|+.....          .....||+.|++||.+....                              
T Consensus       142 ~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~  221 (296)
T 4hgt_A          142 KKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAA  221 (296)
T ss_dssp             GGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCS
T ss_pred             CCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchh
Confidence            34667999999999753222          23467899999999543210                              


Q ss_pred             ----------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         188 ----------------------DEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       188 ----------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                                            ...++++.++|..||..+|.+|||++++++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~  273 (296)
T 4hgt_A          222 TKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             SSSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             hhhhhhhhhhcccccchhhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence                                  011357889999999999999999998764

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=97.68  E-value=8.2e-06  Score=74.00  Aligned_cols=73  Identities=19%  Similarity=0.356  Sum_probs=49.1

Q ss_pred             CCCeEEeecCCcccCCCC------cccccCCCCccCCccccCCC------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPERYMASD------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~------~~~~~~~~~~~~pe~~~~~~------------------------------------  187 (351)
                      .++++|+|||+++.....      .....||+.|++||.+....                                    
T Consensus       152 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~  231 (311)
T 3ork_A          152 TNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQH  231 (311)
T ss_dssp             TSCEEECCCSCC------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHH
T ss_pred             CCCEEEeeccCcccccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHH
Confidence            467999999999753221      23356899999999543220                                    


Q ss_pred             ------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCC
Q psy2006         188 ------------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFD  222 (351)
Q Consensus       188 ------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~  222 (351)
                                  ...++++.++|.+||..||.+|+++.+.+.++|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~  278 (311)
T 3ork_A          232 VREDPIPPSARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVR  278 (311)
T ss_dssp             HHCCCCCHHHHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             hcCCCCCcccccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHH
Confidence                        01235688999999999999999999999998863

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=97.59  E-value=2.4e-05  Score=71.04  Aligned_cols=68  Identities=19%  Similarity=0.312  Sum_probs=43.1

Q ss_pred             CCCeEEeecCCcccCCCC---cccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~---~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||+|+.....   .....||+.|++||.+...                                        
T Consensus       175 ~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~  254 (309)
T 3p86_A          175 KYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFK  254 (309)
T ss_dssp             TCCEEECCCC-----------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHS
T ss_pred             CCcEEECCCCCCccccccccccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhc
Confidence            457999999999753332   3346799999999954322                                        


Q ss_pred             ------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 ------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 ------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                            ....++++.++|.+||..+|.+|||+.++++
T Consensus       255 ~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~  291 (309)
T 3p86_A          255 CKRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMD  291 (309)
T ss_dssp             CCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                  0112356889999999999999999999875

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=97.59  E-value=9.6e-05  Score=65.99  Aligned_cols=69  Identities=12%  Similarity=0.131  Sum_probs=50.6

Q ss_pred             CCCCeEEeecCCcccCCCC----------cccccCCCCccCCccccCCC-------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEH----------HSTIVSTRHYRAPERYMASD-------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~----------~~~~~~~~~~~~pe~~~~~~-------------------------------  187 (351)
                      ..+.++|+|||+++.....          .....||+.|++||.+....                               
T Consensus       143 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~  222 (296)
T 3uzp_A          143 KGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAAT  222 (296)
T ss_dssp             GTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSS
T ss_pred             CCCeEEEeeCCCcccccccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchh
Confidence            4567999999999753222          23467999999999543210                               


Q ss_pred             ---------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         188 ---------------------DEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       188 ---------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                                           ...++++.+++.+||..||.+|||+.++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  273 (296)
T 3uzp_A          223 KRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             SSSHHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             hhhhhhhhcccccCCchHHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHH
Confidence                                 011356889999999999999999998764

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=97.58  E-value=2.6e-05  Score=68.88  Aligned_cols=70  Identities=20%  Similarity=0.231  Sum_probs=45.7

Q ss_pred             CCCCeEEeecCCcccCCC-CcccccCCCCccCCccccCC-----------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDE-HHSTIVSTRHYRAPERYMAS-----------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~-~~~~~~~~~~~~~pe~~~~~-----------------------------------------  186 (351)
                      ..+.++|+|||+++.... ......||+.|++||.+...                                         
T Consensus       151 ~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~  230 (271)
T 3dtc_A          151 SNKILKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNK  230 (271)
T ss_dssp             SSCCEEECCCCC-------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSC
T ss_pred             cCcceEEccCCcccccccccccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCC
Confidence            466799999999976333 33356799999999943211                                         


Q ss_pred             -----ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 -----DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 -----~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                           ....++.+.++|.+||..+|.+|||+.+++++
T Consensus       231 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  267 (271)
T 3dtc_A          231 LALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQ  267 (271)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHH
Confidence                 01123568899999999999999999998753

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=97.56  E-value=8.5e-05  Score=68.32  Aligned_cols=26  Identities=4%  Similarity=0.017  Sum_probs=23.2

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      +++.++|..||..||.+|||++++++
T Consensus       296 ~~l~~li~~~l~~dp~~Rps~~~l~~  321 (345)
T 2v62_A          296 CEIAQFLVCAHSLAYDEKPNYQALKK  321 (345)
T ss_dssp             HHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHhhcCcccCCCHHHHHH
Confidence            37889999999999999999998764

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=97.55  E-value=5e-05  Score=68.96  Aligned_cols=74  Identities=19%  Similarity=0.179  Sum_probs=44.6

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      .++++|+|||+|+.....     .....+++.|++||.+...                                      
T Consensus       173 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~  252 (323)
T 3qup_A          173 DMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYL  252 (323)
T ss_dssp             TSCEEECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHH
T ss_pred             CCCEEEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHH
Confidence            467999999999763222     1234567789999942211                                      


Q ss_pred             --------ChhhHHHHHHHHHHhhccCCCCCCC-------hhhhhcCCCCCC
Q psy2006         187 --------DDEEHRQLFDLISKMLEYEPSERIS-------LSEALRHPFFDK  223 (351)
Q Consensus       187 --------~~~~~~~~~~~i~~~L~~~p~~R~t-------~~e~l~~~~~~~  223 (351)
                              ....++++.++|.+||..||.+|||       +++++.|+|+..
T Consensus       253 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~  304 (323)
T 3qup_A          253 IGGNRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLS  304 (323)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC-----
T ss_pred             hcCCCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcC
Confidence                    1122367889999999999999999       778889999855

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=97.53  E-value=0.00051  Score=62.17  Aligned_cols=97  Identities=12%  Similarity=-0.038  Sum_probs=62.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEe-eCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD-YHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~-~~~~~~lV~E~~   80 (351)
                      +.++.|....||+.     ++.+++|+... ......+.+|.++|+.|.+..+   -.|..++.+.. ..+..++|||++
T Consensus        25 ~~l~~G~~n~v~~v-----g~~~VlR~~~~-~~~~~~~~~E~~~L~~L~~~~~---v~VP~~~~~~~~~~g~~~~v~e~i   95 (306)
T 3tdw_A           25 ESLGEGFRNYAILV-----NGDWVFRFPKS-QQGADELNKEIQLLPLLVGCVK---VNIPQYVYIGKRSDGNPFVGYRKV   95 (306)
T ss_dssp             EEEEECSSEEEEEE-----TTTEEEEEESS-HHHHHHHHHHHHHHHHHTTTCS---SBCCCEEEEEECTTSCEEEEEECC
T ss_pred             eecCCCcceeEEEE-----CCEEEEEecCC-chHHHHHHHHHHHHHHHHhcCC---CCCCCeEeecccCCCceEEEEecc
Confidence            45788888999987     56788999653 2334678899999999975321   11666666664 445788999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHh
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYA  111 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~  111 (351)
                       |..+.+....    .++......+..++...
T Consensus        96 ~G~~l~~~~~~----~l~~~~~~~~~~~lg~~  123 (306)
T 3tdw_A           96 QGQILGEDGMA----VLPDDAKDRLALQLAEF  123 (306)
T ss_dssp             CSEECHHHHHT----TSCHHHHHHHHHHHHHH
T ss_pred             CCeECchhhhh----hCCHHHHHHHHHHHHHH
Confidence             6677653221    23444444444444433

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=97.51  E-value=4e-05  Score=68.65  Aligned_cols=26  Identities=19%  Similarity=0.266  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      +++.+++.+||..||.+|||+.++++
T Consensus       270 ~~l~~li~~cl~~dP~~Rps~~~i~~  295 (301)
T 3q4u_A          270 TSLAKLMKECWYQNPSARLTALRIKK  295 (301)
T ss_dssp             HHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHhhcChhhCCCHHHHHH
Confidence            56889999999999999999999864

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=97.50  E-value=6.1e-05  Score=68.61  Aligned_cols=25  Identities=16%  Similarity=0.177  Sum_probs=22.7

Q ss_pred             HHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         193 QLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       193 ~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      ++.++|.+||..||.+|||+.++++
T Consensus       287 ~l~~li~~cl~~dP~~Rps~~ell~  311 (322)
T 3soc_A          287 MLCETIEECWDHDAEARLSAGCVGE  311 (322)
T ss_dssp             HHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHccCChhhCcCHHHHHH
Confidence            4889999999999999999999865

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=97.46  E-value=5.4e-05  Score=70.74  Aligned_cols=69  Identities=16%  Similarity=0.221  Sum_probs=49.9

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      .++++|+|||+|+.....     .....+|+.|++||.+...                                      
T Consensus       227 ~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~~~~  306 (382)
T 3tt0_A          227 DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLL  306 (382)
T ss_dssp             TCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHH
T ss_pred             CCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence            467999999999764322     2334567889999953221                                      


Q ss_pred             --------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 --------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 --------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                              ....++++.++|.+||..+|.+|||+.+++++
T Consensus       307 ~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  346 (382)
T 3tt0_A          307 KEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  346 (382)
T ss_dssp             HTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                    01123568899999999999999999998764

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=97.46  E-value=6.8e-05  Score=68.40  Aligned_cols=25  Identities=16%  Similarity=0.243  Sum_probs=22.8

Q ss_pred             HHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         193 QLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       193 ~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      ++.++|.+||..||.+|||+.++++
T Consensus       287 ~l~~li~~cl~~dP~~Rps~~e~l~  311 (336)
T 3g2f_A          287 SLKETIEDCWDQDAEARLTAQXAEE  311 (336)
T ss_dssp             HHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHhcCChhhCcchHHHHH
Confidence            5889999999999999999999853

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=97.46  E-value=4.7e-05  Score=69.26  Aligned_cols=29  Identities=31%  Similarity=0.359  Sum_probs=25.9

Q ss_pred             hHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         190 EHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       190 ~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      ..+++.+++.+||..||.+|||+.+++++
T Consensus       277 ~~~~l~~li~~cl~~dP~~Rps~~ell~~  305 (326)
T 3uim_A          277 EVEQLIQVALLCTQSSPMERPKMSEVVRM  305 (326)
T ss_dssp             HHHHHHHHHHHHTCSCGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcCCccCCCHHHHHHH
Confidence            34678999999999999999999998875

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=97.46  E-value=0.00087  Score=62.80  Aligned_cols=76  Identities=21%  Similarity=0.110  Sum_probs=49.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||.|..+.||++.+...++.|++|......        ...+....|.++|+.+....+.   .+..++.+  +.+..
T Consensus        36 ~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~---~vP~~~~~--d~~~~  110 (397)
T 2olc_A           36 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPH---LVPRVFYS--DTEMA  110 (397)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGG---GSCCEEEE--ETTTT
T ss_pred             EECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCC---CcCeEEEE--cCCcc
Confidence            57999999999999765667899999864311        1123457799999988642221   15555543  34567


Q ss_pred             EEEEeccCC
Q psy2006          74 CIAFEILGL   82 (351)
Q Consensus        74 ~lV~E~~g~   82 (351)
                      ++|||++++
T Consensus       111 ~lvmE~l~g  119 (397)
T 2olc_A          111 VTVMEDLSH  119 (397)
T ss_dssp             EEEECCCTT
T ss_pred             EEEEEeCCC
Confidence            899999943

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=97.45  E-value=3.5e-05  Score=69.58  Aligned_cols=68  Identities=19%  Similarity=0.295  Sum_probs=49.1

Q ss_pred             CCCeEEeecCCcccCCCCc-----------------ccccCCCCccCCccccCCC-------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHH-----------------STIVSTRHYRAPERYMASD-------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~-----------------~~~~~~~~~~~pe~~~~~~-------------------------  187 (351)
                      .++++|+|||+++......                 ....||+.|++||.+....                         
T Consensus       144 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~  223 (310)
T 3s95_A          144 NKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADP  223 (310)
T ss_dssp             TSCEEECCCTTCEECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSST
T ss_pred             CCCEEEeecccceecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCc
Confidence            5679999999997532221                 1457999999999554221                         


Q ss_pred             ----------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         188 ----------------------DEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       188 ----------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                                            ....+.+.+++.+||..||.+|||+.++++
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~  275 (310)
T 3s95_A          224 DYLPRTMDFGLNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEH  275 (310)
T ss_dssp             TTSCBCTTSSBCHHHHHHHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             chhhhHHHHhhhhhccccccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                                  011245778999999999999999999865

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=97.44  E-value=0.00015  Score=67.08  Aligned_cols=76  Identities=8%  Similarity=0.012  Sum_probs=52.0

Q ss_pred             cccccccCCCCeEEeecCCcccCCCC----------cccccCCCCccCCccccCCC------------------------
Q psy2006         142 KREVRRVRRCDIRLIDFGSATFDDEH----------HSTIVSTRHYRAPERYMASD------------------------  187 (351)
Q Consensus       142 ~i~h~d~k~~ni~l~Dfg~s~~~~~~----------~~~~~~~~~~~~pe~~~~~~------------------------  187 (351)
                      +|+...-..+.++|+|||+|+.....          .....||+.|++||.+....                        
T Consensus       182 Nill~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf  261 (364)
T 3op5_A          182 NLLLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPW  261 (364)
T ss_dssp             GEEEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTT
T ss_pred             HEEEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence            34443234677999999999652211          13345999999999543220                        


Q ss_pred             -------------------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         188 -------------------------------DEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       188 -------------------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                                                     ....+++.+++..|+..+|.+||++.+++.
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~l~~  322 (364)
T 3op5_A          262 EDNLKDPKYVRDSKIRYRENIASLMDKCFPAANAPGEIAKYMETVKLLDYTEKPLYENLRD  322 (364)
T ss_dssp             GGGTTCHHHHHHHHHHHHHCHHHHHHHHSCTTCCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             cccccCHHHHHHHHHHhhhhHHHHHHHhcccccCHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence                                           001345778999999999999999988754

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=97.44  E-value=2.8e-05  Score=69.03  Aligned_cols=71  Identities=27%  Similarity=0.338  Sum_probs=52.8

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      .++++|+|||++....  .......+++.|++||.+....                                        
T Consensus       158 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~  237 (284)
T 2a19_B          158 TKQVKIGDFGLVTSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFTDLRDGIIS  237 (284)
T ss_dssp             TTEEEECCCTTCEESSCCSCCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEECcchhheeccccccccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHHHHHhhccccc
Confidence            4569999999997633  2344567999999999543221                                        


Q ss_pred             hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCC
Q psy2006         188 DEEHRQLFDLISKMLEYEPSERISLSEALRHPF  220 (351)
Q Consensus       188 ~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~  220 (351)
                      ...+..+.++|.+||..||.+|||+.+++++.+
T Consensus       238 ~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~  270 (284)
T 2a19_B          238 DIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLT  270 (284)
T ss_dssp             TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence            011245678999999999999999999988754

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=97.38  E-value=5.4e-05  Score=68.45  Aligned_cols=65  Identities=23%  Similarity=0.419  Sum_probs=42.5

Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCC---------------------------------------------
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD---------------------------------------------  187 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~---------------------------------------------  187 (351)
                      ++|+|||++...........||+.|++||.+....                                             
T Consensus       145 ~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~  224 (307)
T 2eva_A          145 LKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNGTRPP  224 (307)
T ss_dssp             EEECCCCC------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTTCCCC
T ss_pred             EEEcccccccccccccccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcCCCCC
Confidence            79999999987665556678999999999543210                                             


Q ss_pred             --hhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         188 --DEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       188 --~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                        ...++.+.++|.+||..||.+|||++++++
T Consensus       225 ~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  256 (307)
T 2eva_A          225 LIKNLPKPIESLMTRCWSKDPSQRPSMEEIVK  256 (307)
T ss_dssp             CBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cccccCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence              011256789999999999999999999875

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=97.36  E-value=0.0019  Score=58.70  Aligned_cols=74  Identities=16%  Similarity=0.151  Sum_probs=44.8

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeee------eEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLD------WFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~------~f~~~~~~~l   75 (351)
                      +.|+.|..+.||+...  .+..+++|+....   .+.+..|..+++.|...+-.    |.+++.      +....+..++
T Consensus        38 ~~l~gG~~n~~~~v~~--~~~~~vlk~~~~~---~~~~~~e~~~l~~L~~~g~~----vp~~~~~~~g~~~~~~~~~~~~  108 (346)
T 2q83_A           38 DVIQGNQMALVWKVHT--DSGAVCLKRIHRP---EKKALFSIFAQDYLAKKGMN----VPGILPNKKGSLYSKHGSFLFV  108 (346)
T ss_dssp             EECC----CEEEEEEE--TTEEEEEEEECSC---HHHHHHHHHHHHHHHHHTCS----SCCBCCCTTSCSCEEETTEEEE
T ss_pred             eeccccccCcEEEEEe--CCCCEEEEecCCC---HHHHHHHHHHHHHHHHcCCC----CCceeecCCCCEEEEECCEEEE
Confidence            3466678899999874  3455899999753   23445677778777532211    455543      1235678899


Q ss_pred             EEecc-CCCH
Q psy2006          76 AFEIL-GLSV   84 (351)
Q Consensus        76 V~E~~-g~sL   84 (351)
                      |||++ |..+
T Consensus       109 l~~~i~G~~~  118 (346)
T 2q83_A          109 VYDWIEGRPF  118 (346)
T ss_dssp             EEECCCCBCC
T ss_pred             EEEeecCccC
Confidence            99999 5443

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=97.33  E-value=0.00012  Score=65.41  Aligned_cols=68  Identities=21%  Similarity=0.301  Sum_probs=43.1

Q ss_pred             CCCeEEeecCCcccCC-----CCcccccCCCCccCCccccC---C-----------------------------C-----
Q psy2006         150 RCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPERYMA---S-----------------------------D-----  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~-----~~~~~~~~~~~~~~pe~~~~---~-----------------------------~-----  187 (351)
                      .++++|+|||+++...     .......||+.|++||.+..   .                             .     
T Consensus       156 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~  235 (289)
T 3og7_A          156 DNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQII  235 (289)
T ss_dssp             TTEEEECCCC------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHH
T ss_pred             CCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHH
Confidence            4569999999997532     22334578999999996531   0                             0     


Q ss_pred             ----------------hhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         188 ----------------DEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       188 ----------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                                      ...++++.++|.+||..+|.+|||+.++++
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~  281 (289)
T 3og7_A          236 EMVGRGSLSPDLSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILA  281 (289)
T ss_dssp             HHHHHTSCCCCTTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHhcccccCcchhhccccCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                            011256889999999999999999999865

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=97.30  E-value=0.00041  Score=67.07  Aligned_cols=79  Identities=13%  Similarity=0.121  Sum_probs=55.2

Q ss_pred             CCCCeEEeecCCcccCCCC----------cccccCCCCccCCccccCCC-------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEH----------HSTIVSTRHYRAPERYMASD-------------------------------  187 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~----------~~~~~~~~~~~~pe~~~~~~-------------------------------  187 (351)
                      ..+.++|+|||+|+.....          .....||+.|++||.+....                               
T Consensus       141 ~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~  220 (483)
T 3sv0_A          141 RANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGT  220 (483)
T ss_dssp             GTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSS
T ss_pred             CCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchh
Confidence            4567999999999753222          12567999999999543210                               


Q ss_pred             ---------------------hhhHHHHHHHHHHhhccCCCCCCChhhhh----------cCCCCCCCCch
Q psy2006         188 ---------------------DEEHRQLFDLISKMLEYEPSERISLSEAL----------RHPFFDKLPSS  227 (351)
Q Consensus       188 ---------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l----------~~~~~~~~~~~  227 (351)
                                           ....+++.++|..||..+|.+||++.+++          .++|+....|.
T Consensus       221 ~~~~~~~i~~~~~~~~~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~~~~~~~~~~dW~  291 (483)
T 3sv0_A          221 KKQKYEKISEKKVATSIEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIREGFQFDYVFDWT  291 (483)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTTCCCSSCCHHH
T ss_pred             HHHHHHHHhhccccccHHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHHcCCCccCCcCch
Confidence                                 00124678999999999999999988765          34666555553

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=97.30  E-value=0.0001  Score=67.06  Aligned_cols=27  Identities=19%  Similarity=0.337  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      +++.++|.+||..||.+|||+.+++++
T Consensus       299 ~~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          299 RQMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence            457899999999999999999998764

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=97.27  E-value=0.00014  Score=66.05  Aligned_cols=69  Identities=35%  Similarity=0.449  Sum_probs=37.8

Q ss_pred             CCCeEEeecCCcccCCCCc---------------ccccCCCCccCCcccc---CCC------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHH---------------STIVSTRHYRAPERYM---ASD------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~---------------~~~~~~~~~~~pe~~~---~~~------------------------  187 (351)
                      .++++|+|||+++......               ....+|+.|++||.+.   ...                        
T Consensus       174 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~  253 (337)
T 3ll6_A          174 QGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPF  253 (337)
T ss_dssp             TSCEEBCCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             CCCEEEecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCC
Confidence            4579999999997643221               1346899999999762   110                        


Q ss_pred             ------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         188 ------------------DEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       188 ------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                                        ......+.++|.+||..||.+|||+.+++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  302 (337)
T 3ll6_A          254 EDGAKLRIVNGKYSIPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQ  302 (337)
T ss_dssp             ------------CCCCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             cchhHHHhhcCcccCCcccccchHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                              0011346689999999999999999999875

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=97.27  E-value=0.00037  Score=63.34  Aligned_cols=69  Identities=14%  Similarity=0.157  Sum_probs=46.8

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccCC-----------------------C--------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMAS-----------------------D--------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~~-----------------------~--------------  187 (351)
                      .++++|+|||+|+.....     .....++..|++||.+...                       .              
T Consensus       151 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~  230 (325)
T 3kex_A          151 PSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLL  230 (325)
T ss_dssp             SSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHH
T ss_pred             CCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHH
Confidence            567999999999763222     2335677799999943211                       0              


Q ss_pred             ---------hhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         188 ---------DEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       188 ---------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                               ...+.++.+++.+||..||.+|||+.+++++
T Consensus       231 ~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~  270 (325)
T 3kex_A          231 EKGERLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANE  270 (325)
T ss_dssp             HTTCBCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHH
T ss_pred             HcCCCCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                     0112346689999999999999999998764

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=97.27  E-value=0.00018  Score=64.32  Aligned_cols=66  Identities=11%  Similarity=0.162  Sum_probs=48.3

Q ss_pred             CeEEeecCCcccCCCC----------cccccCCCCccCCccccCCC----------------------------------
Q psy2006         152 DIRLIDFGSATFDDEH----------HSTIVSTRHYRAPERYMASD----------------------------------  187 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~----------~~~~~~~~~~~~pe~~~~~~----------------------------------  187 (351)
                      .++|+|||+|+.....          .....||+.|++||.+....                                  
T Consensus       149 ~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~  228 (298)
T 1csn_A          149 MIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQ  228 (298)
T ss_dssp             CEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHH
T ss_pred             eEEEEECccccccccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHH
Confidence            3999999999753221          23457999999999543210                                  


Q ss_pred             ------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         188 ------------------DEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       188 ------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                                        ...++++.+++.+||..+|.+|||++++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~  276 (298)
T 1csn_A          229 KYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLAFDATPDYDYLQG  276 (298)
T ss_dssp             HHHHHHHHHHHSCHHHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             HHHHHHhhccCccHHHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHH
Confidence                              011246889999999999999999998754

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.22  E-value=0.00023  Score=71.78  Aligned_cols=70  Identities=17%  Similarity=0.333  Sum_probs=53.2

Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCC--------------------------------h-----hhHHH
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD--------------------------------D-----EEHRQ  193 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~--------------------------------~-----~~~~~  193 (351)
                      ++++|+|||+++..... ....||+.|++||.+....                                .     ...+.
T Consensus       218 ~~~kl~DFG~a~~~~~~-~~~~gt~~y~aPE~~~~~~~~~sDi~slG~~l~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~  296 (681)
T 2pzi_A          218 EQLKLIDLGAVSRINSF-GYLYGTPGFQAPEIVRTGPTVATDIYTVGRTLAALTLDLPTRNGRYVDGLPEDDPVLKTYDS  296 (681)
T ss_dssp             SCEEECCCTTCEETTCC-SCCCCCTTTSCTTHHHHCSCHHHHHHHHHHHHHHHHSCCCEETTEECSSCCTTCHHHHHCHH
T ss_pred             CcEEEEecccchhcccC-CccCCCccccCHHHHcCCCCCceehhhhHHHHHHHHhCCCCCcccccccccccccccccCHH
Confidence            47999999999775443 4567999999999542110                                0     11256


Q ss_pred             HHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         194 LFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       194 ~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                      +.++|.+||..||.+|++..+.+.++|+
T Consensus       297 l~~li~~~l~~dP~~R~~~~~~l~~~l~  324 (681)
T 2pzi_A          297 YGRLLRRAIDPDPRQRFTTAEEMSAQLT  324 (681)
T ss_dssp             HHHHHHHHTCSSGGGSCSSHHHHHHHHH
T ss_pred             HHHHHhhhccCChhhCCCHHHHHHHHHH
Confidence            8899999999999999998888877664

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=97.21  E-value=0.00015  Score=67.39  Aligned_cols=70  Identities=14%  Similarity=0.214  Sum_probs=50.4

Q ss_pred             CCeEEeecCCcccC-----CCCcccccCCCCccCCccccCC---------------------------------------
Q psy2006         151 CDIRLIDFGSATFD-----DEHHSTIVSTRHYRAPERYMAS---------------------------------------  186 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~-----~~~~~~~~~~~~~~~pe~~~~~---------------------------------------  186 (351)
                      ..++|+|||+|+..     ........+|+.|++||.+...                                       
T Consensus       221 ~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~  300 (367)
T 3l9p_A          221 RVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVT  300 (367)
T ss_dssp             CCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHH
T ss_pred             ceEEECCCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence            35899999999641     1223345678899999943211                                       


Q ss_pred             -------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCC
Q psy2006         187 -------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPF  220 (351)
Q Consensus       187 -------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~  220 (351)
                             .......+.+++.+||..+|.+|||+.+++++.+
T Consensus       301 ~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~  341 (367)
T 3l9p_A          301 SGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIE  341 (367)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             cCCCCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHH
Confidence                   0112356889999999999999999999988754

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=97.21  E-value=0.00015  Score=66.83  Aligned_cols=105  Identities=17%  Similarity=0.264  Sum_probs=71.2

Q ss_pred             CCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc----ccccccccCCCCeEEeecCCcccCCCC---
Q psy2006          95 PYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK----KKREVRRVRRCDIRLIDFGSATFDDEH---  167 (351)
Q Consensus        95 ~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~~i~h~d~k~~ni~l~Dfg~s~~~~~~---  167 (351)
                      .+++..+..++.|++.|            +.++     +....+|.    .+|+..  ..++++|+|||+|+.....   
T Consensus       189 ~l~~~~~~~~~~ql~~a------------L~~L-----H~~~ivH~Dikp~NIll~--~~~~~kl~Dfg~a~~~~~~~~~  249 (359)
T 3vhe_A          189 FLTLEHLICYSFQVAKG------------MEFL-----ASRKCIHRDLAARNILLS--EKNVVKICDFGLARDIYKDPDY  249 (359)
T ss_dssp             CBCHHHHHHHHHHHHHH------------HHHH-----HHTTCCCSCCSGGGEEEC--GGGCEEECCCGGGSCTTSCTTC
T ss_pred             ccCHHHHHHHHHHHHHH------------HHHH-----HHCCcccCCCChhhEEEc--CCCcEEEEeccceeeecccccc
Confidence            38899999999999998            3333     22345553    223321  3457999999999753221   


Q ss_pred             --cccccCCCCccCCcccc-----------------------CCC------------------------hhhHHHHHHHH
Q psy2006         168 --HSTIVSTRHYRAPERYM-----------------------ASD------------------------DEEHRQLFDLI  198 (351)
Q Consensus       168 --~~~~~~~~~~~~pe~~~-----------------------~~~------------------------~~~~~~~~~~i  198 (351)
                        .....+|+.|++||.+.                       +..                        ...++++.+++
T Consensus       250 ~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  329 (359)
T 3vhe_A          250 VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM  329 (359)
T ss_dssp             EEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHH
T ss_pred             hhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCCCCCCCCCHHHHHHH
Confidence              23356788999999421                       110                        11235788999


Q ss_pred             HHhhccCCCCCCChhhhhcC
Q psy2006         199 SKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       199 ~~~L~~~p~~R~t~~e~l~~  218 (351)
                      .+||..||.+|||+.+++++
T Consensus       330 ~~~l~~dP~~Rps~~ell~~  349 (359)
T 3vhe_A          330 LDCWHGEPSQRPTFSELVEH  349 (359)
T ss_dssp             HHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHccCChhhCCCHHHHHHH
Confidence            99999999999999998764

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=97.20  E-value=0.00021  Score=64.01  Aligned_cols=69  Identities=19%  Similarity=0.334  Sum_probs=44.0

Q ss_pred             CCCeEEeecCCcccCCCC----cccccCCCCccCCccccCCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPERYMASD--------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~----~~~~~~~~~~~~pe~~~~~~--------------------------------------  187 (351)
                      .++++|+|||+|+.....    .....||+.|++||.+....                                      
T Consensus       147 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~  226 (294)
T 4eqm_A          147 NKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQ  226 (294)
T ss_dssp             TSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHS
T ss_pred             CCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhh
Confidence            467999999999764322    23357999999999543210                                      


Q ss_pred             -----------hhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         188 -----------DEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       188 -----------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                                 ...++.+.++|.+||..||.+|++..+.+.+
T Consensus       227 ~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~  268 (294)
T 4eqm_A          227 DSVPNVTTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKD  268 (294)
T ss_dssp             SCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHH
T ss_pred             ccCCCcchhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHH
Confidence                       0112568899999999999999955444443

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=97.19  E-value=0.00018  Score=63.73  Aligned_cols=68  Identities=15%  Similarity=0.179  Sum_probs=43.6

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccC-----------------------C--------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMA-----------------------S--------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~-----------------------~--------------------  186 (351)
                      .++++|+|||++...........+++.|++||.+..                       .                    
T Consensus       153 ~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~~~~  232 (278)
T 1byg_A          153 DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYK  232 (278)
T ss_dssp             TSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTCC
T ss_pred             CCcEEEeeccccccccccccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcCCC
Confidence            457999999999876555555678889999994321                       0                    


Q ss_pred             ---ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 ---DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 ---~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                         ....++.+.++|.+||..||.+|||+.++++
T Consensus       233 ~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  266 (278)
T 1byg_A          233 MDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE  266 (278)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHH
Confidence               0112356889999999999999999998864

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=97.18  E-value=0.00038  Score=63.41  Aligned_cols=65  Identities=17%  Similarity=0.236  Sum_probs=47.6

Q ss_pred             eEEeecCCcccCCCC----------cccccCCCCccCCccccCCC-----------------------------h-----
Q psy2006         153 IRLIDFGSATFDDEH----------HSTIVSTRHYRAPERYMASD-----------------------------D-----  188 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~----------~~~~~~~~~~~~pe~~~~~~-----------------------------~-----  188 (351)
                      ++|+|||+|+.....          .....||+.|++||.+....                             .     
T Consensus       149 ~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~  228 (330)
T 2izr_A          149 IHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKER  228 (330)
T ss_dssp             EEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHH
T ss_pred             EEEEEcccceeeecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHH
Confidence            999999999753221          23568999999999543220                             0     


Q ss_pred             -----------------hhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         189 -----------------EEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       189 -----------------~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                                       ...+++.+++..||..+|.+||+++++.+
T Consensus       229 ~~~i~~~~~~~~~~~~~~~~p~~~~li~~~l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          229 YQKIGDTKRATPIEVLCENFPEMATYLRYVRRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             HHHHHHHHHHSCHHHHTTTCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             HHHHHhhhccCCHHHHhccChHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence                             00237889999999999999999888754

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=97.18  E-value=0.00018  Score=64.17  Aligned_cols=68  Identities=16%  Similarity=0.216  Sum_probs=49.3

Q ss_pred             CCCeEEeecCCcccCCC-------CcccccCCCCccCCccccCC------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPERYMAS------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~-------~~~~~~~~~~~~~pe~~~~~------------------------------------  186 (351)
                      .++++|+|||+|+....       ......+++.|++||.+...                                    
T Consensus       160 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~~~~  239 (298)
T 3pls_A          160 SFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFDLTH  239 (298)
T ss_dssp             TCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGGHHH
T ss_pred             CCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHHHHH
Confidence            45799999999975322       22335678889999954321                                    


Q ss_pred             ----------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 ----------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 ----------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                                ....++.+.+++.+||..+|.+|||+.++++
T Consensus       240 ~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~  280 (298)
T 3pls_A          240 FLAQGRRLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVG  280 (298)
T ss_dssp             HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HhhcCCCCCCCccchHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                      0112356889999999999999999998865

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=97.17  E-value=0.00028  Score=63.07  Aligned_cols=68  Identities=18%  Similarity=0.201  Sum_probs=48.2

Q ss_pred             CCCeEEeecCCcccCCCC-------cccccCCCCccCCccccCC------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-------HSTIVSTRHYRAPERYMAS------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-------~~~~~~~~~~~~pe~~~~~------------------------------------  186 (351)
                      .+.++|+|||+|+.....       .....+|+.|++||.+...                                    
T Consensus       164 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~  243 (298)
T 3f66_A          164 KFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV  243 (298)
T ss_dssp             TCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHH
T ss_pred             CCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHH
Confidence            457999999999753222       2334667789999943211                                    


Q ss_pred             ----------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 ----------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 ----------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                                ....++.+.+++.+||..+|.+|||+.++++
T Consensus       244 ~~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~  284 (298)
T 3f66_A          244 YLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS  284 (298)
T ss_dssp             HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHhcCCCCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                      1112356889999999999999999999865

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=97.16  E-value=0.00022  Score=63.25  Aligned_cols=69  Identities=13%  Similarity=0.214  Sum_probs=49.1

Q ss_pred             CCCeEEeecCCcccCCCC----cccccCCCCccCCccccC-----------------------C----------------
Q psy2006         150 RCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPERYMA-----------------------S----------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~----~~~~~~~~~~~~pe~~~~-----------------------~----------------  186 (351)
                      .++++|+|||+++.....    .....+|+.|++||.+..                       .                
T Consensus       156 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~  235 (283)
T 3gen_A          156 QGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIA  235 (283)
T ss_dssp             TSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHH
T ss_pred             CCCEEEccccccccccccccccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHh
Confidence            457999999999754332    222356678999994321                       1                


Q ss_pred             -------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 -------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 -------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                             ....++.+.++|.+||..+|.+|||+.+++++
T Consensus       236 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  274 (283)
T 3gen_A          236 QGLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN  274 (283)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             cccCCCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence                   01123568899999999999999999998764

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=97.14  E-value=0.00019  Score=66.86  Aligned_cols=69  Identities=16%  Similarity=0.231  Sum_probs=49.4

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      .++++|+|||+|+.....     .....+|+.|++||.+...                                      
T Consensus       239 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~~~  318 (370)
T 2psq_A          239 NNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLL  318 (370)
T ss_dssp             TCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHH
T ss_pred             CCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHH
Confidence            467999999999753221     2234567889999943211                                      


Q ss_pred             --------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 --------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 --------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                              ....++++.++|.+||..+|.+|||+.+++++
T Consensus       319 ~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~  358 (370)
T 2psq_A          319 KEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  358 (370)
T ss_dssp             HTTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             hcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                    01123478899999999999999999998753

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=97.13  E-value=0.00029  Score=63.81  Aligned_cols=29  Identities=24%  Similarity=0.300  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         190 EHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       190 ~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      ..+++.+++.+||..||.+|||+.+++++
T Consensus       281 ~~~~l~~li~~~l~~dP~~Rps~~ell~~  309 (321)
T 2qkw_B          281 SLRKFGDTAVKCLALSSEDRPSMGDVLWK  309 (321)
T ss_dssp             HHHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence            34678899999999999999999998764

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=97.12  E-value=0.00018  Score=68.80  Aligned_cols=68  Identities=15%  Similarity=0.196  Sum_probs=47.9

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC-------------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS-------------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~-------------------------------------------  186 (351)
                      .+.++|+|||+|+..........++..|+|||.+...                                           
T Consensus       325 ~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~  404 (450)
T 1k9a_A          325 DNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYK  404 (450)
T ss_dssp             TSCEEECCCTTCEECC------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTTCC
T ss_pred             CCCEEEeeCCCcccccccccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC
Confidence            4579999999998755544445678899999953211                                           


Q ss_pred             ---ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 ---DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 ---~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                         +...++++.++|.+|+..||.+|||+.+++.
T Consensus       405 ~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~  438 (450)
T 1k9a_A          405 MDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLRE  438 (450)
T ss_dssp             CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence               0112367889999999999999999998754

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=97.12  E-value=0.0005  Score=63.23  Aligned_cols=27  Identities=7%  Similarity=0.062  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      ++++.++|.+||..||.+|||++++++
T Consensus       303 ~~~l~~li~~~l~~dp~~Rps~~~l~~  329 (352)
T 2jii_A          303 SETLQKYLKVVMALTYEEKPPYAMLRN  329 (352)
T ss_dssp             CHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             cHHHHHHHHHHHhCChhhCCCHHHHHH
Confidence            467889999999999999999998864

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=97.12  E-value=0.00027  Score=62.23  Aligned_cols=69  Identities=17%  Similarity=0.322  Sum_probs=49.1

Q ss_pred             CCCeEEeecCCcccCCCC----cccccCCCCccCCccccC-----------------------C----------------
Q psy2006         150 RCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPERYMA-----------------------S----------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~----~~~~~~~~~~~~pe~~~~-----------------------~----------------  186 (351)
                      .++++|+|||+++.....    .....+|+.|++||.+..                       .                
T Consensus       142 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~  221 (269)
T 4hcu_A          142 NQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDIS  221 (269)
T ss_dssp             GGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHH
T ss_pred             CCCEEeccccccccccccccccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHh
Confidence            356999999999764332    223456678999994321                       1                


Q ss_pred             -------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 -------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 -------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                             ....++++.+++.+||..+|.+|||+.+++++
T Consensus       222 ~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~  260 (269)
T 4hcu_A          222 TGFRLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ  260 (269)
T ss_dssp             TTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             cCccCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence                   01123567899999999999999999998764

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=97.10  E-value=0.00041  Score=62.74  Aligned_cols=69  Identities=22%  Similarity=0.295  Sum_probs=49.1

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      .++++|+|||+++.....     .....+|+.|++||.+...                                      
T Consensus       174 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~  253 (322)
T 1p4o_A          174 DFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFV  253 (322)
T ss_dssp             TCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHH
T ss_pred             CCeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHH
Confidence            467999999999753222     1223567889999943211                                      


Q ss_pred             --------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 --------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 --------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                              ....++.+.++|.+||..+|.+|||+.+++++
T Consensus       254 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~  293 (322)
T 1p4o_A          254 MEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  293 (322)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HcCCcCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                    01123568899999999999999999998764

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=97.09  E-value=0.00032  Score=63.98  Aligned_cols=68  Identities=13%  Similarity=0.140  Sum_probs=44.1

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      .++++|+|||+|+.....     .....+|+.|++||.+...                                      
T Consensus       153 ~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~  232 (327)
T 3lzb_A          153 PQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSIL  232 (327)
T ss_dssp             TTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHH
T ss_pred             CCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
Confidence            456999999999763222     2234567789999943211                                      


Q ss_pred             --------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 --------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 --------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                              ....+.++.++|.+||..||.+|||+.+++.
T Consensus       233 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  271 (327)
T 3lzb_A          233 EKGERLPQPPICTIDVYMIMRKCWMIDADSRPKFRELII  271 (327)
T ss_dssp             HTTCCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HcCCCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                    1122356889999999999999999999875

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=97.08  E-value=0.00024  Score=62.44  Aligned_cols=69  Identities=13%  Similarity=0.244  Sum_probs=48.9

Q ss_pred             CCCeEEeecCCcccCCCCc----ccccCCCCccCCccccC-----------------------C----------------
Q psy2006         150 RCDIRLIDFGSATFDDEHH----STIVSTRHYRAPERYMA-----------------------S----------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~----~~~~~~~~~~~pe~~~~-----------------------~----------------  186 (351)
                      .++++|+|||++.......    ....+|+.|++||.+..                       .                
T Consensus       140 ~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~  219 (268)
T 3sxs_A          140 DLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVS  219 (268)
T ss_dssp             TCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHH
T ss_pred             CCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHH
Confidence            4679999999997543322    22345667999994321                       1                


Q ss_pred             -------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 -------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 -------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                             +...++.+.+++.+||..+|.+|||+.+++++
T Consensus       220 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (268)
T 3sxs_A          220 QGHRLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSS  258 (268)
T ss_dssp             TTCCCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             cCCCCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                   01124568899999999999999999998764

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=97.07  E-value=0.00066  Score=60.89  Aligned_cols=68  Identities=24%  Similarity=0.383  Sum_probs=49.6

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      .++++|+|||+++.....     .....||+.|++||.+...                                      
T Consensus       169 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~  248 (307)
T 2nru_A          169 AFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRGEITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLDIKE  248 (307)
T ss_dssp             TCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTTEECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTHHHH
T ss_pred             CCcEEEeecccccccccccccccccccCCCcCcCChHHhcCCCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHHHHH
Confidence            457999999999753322     2235789999999943211                                      


Q ss_pred             --------------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 --------------------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 --------------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                                          .....+.+.+++.+||..+|.+|||+.++++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~  299 (307)
T 2nru_A          249 EIEDEEKTIEDYIDKKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQ  299 (307)
T ss_dssp             HHHTTSCCHHHHSCSSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             HhhhhhhhhhhhccccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                                0112356788999999999999999999865

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=97.06  E-value=0.00058  Score=64.03  Aligned_cols=28  Identities=11%  Similarity=0.167  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         190 EHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       190 ~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      ....+.++|.+||.+||.+|+|++++++
T Consensus       275 ~~~~l~~ll~~~L~~dP~~R~s~~e~l~  302 (396)
T 4eut_A          275 LQVLLTPVLANILEADQEKCWGFDQFFA  302 (396)
T ss_dssp             HHHHHHHHHHHHSCCCTTTSCCHHHHHH
T ss_pred             HHhhchHHHHHhhccChhhhccHHHHHH
Confidence            3456779999999999999999998754

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=97.04  E-value=0.00023  Score=64.17  Aligned_cols=69  Identities=13%  Similarity=0.143  Sum_probs=44.8

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      .++++|+|||+++.....     .....+++.|++||.+...                                      
T Consensus       183 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~  262 (313)
T 3brb_A          183 DMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYL  262 (313)
T ss_dssp             TSCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHH
T ss_pred             CCcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHH
Confidence            457999999999753222     1234567789999943211                                      


Q ss_pred             --------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 --------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 --------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                              ....++++.++|.+||..+|.+|||+.+++.+
T Consensus       263 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  302 (313)
T 3brb_A          263 LHGHRLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQ  302 (313)
T ss_dssp             HTTCCCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             HcCCCCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                    01123568899999999999999999998653

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=97.03  E-value=0.00033  Score=62.16  Aligned_cols=68  Identities=24%  Similarity=0.316  Sum_probs=40.0

Q ss_pred             CCCeEEeecCCcccCCCC----cccccCCCCccCCccccC-----------------------C----------------
Q psy2006         150 RCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPERYMA-----------------------S----------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~----~~~~~~~~~~~~pe~~~~-----------------------~----------------  186 (351)
                      .++++|+|||+++.....    .....+++.|++||.+..                       .                
T Consensus       152 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~  231 (281)
T 1mp8_A          152 NDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIE  231 (281)
T ss_dssp             TTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHH
T ss_pred             CCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHH
Confidence            456999999999764322    222356778999994321                       0                


Q ss_pred             -------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 -------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 -------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                             ....++++.++|.+||..||.+|||+.++++
T Consensus       232 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  269 (281)
T 1mp8_A          232 NGERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKA  269 (281)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                   0112356889999999999999999999865

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=97.00  E-value=0.00037  Score=62.23  Aligned_cols=26  Identities=8%  Similarity=0.234  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      +++.++|.+||..||.+|||+.+++.
T Consensus       259 ~~l~~li~~~l~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          259 DEIYMIMTECWNNNVNQRPSFRDLAL  284 (295)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCCCHHHHHH
Confidence            56889999999999999999999864

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=96.99  E-value=0.00043  Score=62.17  Aligned_cols=106  Identities=15%  Similarity=0.279  Sum_probs=71.7

Q ss_pred             CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc----ccccccccCCCCeEEeecCCcccCCCCc-
Q psy2006          94 LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK----KKREVRRVRRCDIRLIDFGSATFDDEHH-  168 (351)
Q Consensus        94 ~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~~i~h~d~k~~ni~l~Dfg~s~~~~~~~-  168 (351)
                      ..+++..+..++.|++.|            +..+     +.....|.    .+|+..  ..++++|+|||+++...... 
T Consensus       140 ~~~~~~~~~~~~~qi~~~------------l~~l-----H~~~i~H~dlkp~Nil~~--~~~~~kl~Dfg~~~~~~~~~~  200 (313)
T 1t46_A          140 LALDLEDLLSFSYQVAKG------------MAFL-----ASKNCIHRDLAARNILLT--HGRITKICDFGLARDIKNDSN  200 (313)
T ss_dssp             CCCCHHHHHHHHHHHHHH------------HHHH-----HHTTCCCSCCSGGGEEEE--TTTEEEECCCGGGSCTTSCTT
T ss_pred             ccCCHHHHHHHHHHHHHH------------HHHH-----HHCCeecCCCccceEEEc--CCCCEEEcccccccccccccc
Confidence            468999999999999998            2222     22344553    233322  34668999999997643322 


Q ss_pred             ----ccccCCCCccCCccccC-----------------------C------------------------ChhhHHHHHHH
Q psy2006         169 ----STIVSTRHYRAPERYMA-----------------------S------------------------DDEEHRQLFDL  197 (351)
Q Consensus       169 ----~~~~~~~~~~~pe~~~~-----------------------~------------------------~~~~~~~~~~~  197 (351)
                          ....+|+.|++||.+..                       .                        ....++++.++
T Consensus       201 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  280 (313)
T 1t46_A          201 YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDI  280 (313)
T ss_dssp             SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHH
T ss_pred             ceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHHHHHhccCCCCCCcccCCHHHHHH
Confidence                22456778999994311                       0                        01123568899


Q ss_pred             HHHhhccCCCCCCChhhhhcC
Q psy2006         198 ISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       198 i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      |.+||..||.+|||+.+++++
T Consensus       281 i~~~l~~dp~~Rps~~ell~~  301 (313)
T 1t46_A          281 MKTCWDADPLKRPTFKQIVQL  301 (313)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHcCCCchhCcCHHHHHHH
Confidence            999999999999999998753

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=96.98  E-value=0.00028  Score=63.14  Aligned_cols=26  Identities=27%  Similarity=0.636  Sum_probs=23.6

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      +++.++|.+||..||.+|||+.++++
T Consensus       270 ~~l~~li~~~l~~dp~~Rps~~~ll~  295 (302)
T 4e5w_A          270 DEVYQLMRKCWEFQPSNRTSFQNLIE  295 (302)
T ss_dssp             HHHHHHHHHTTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            56889999999999999999999864

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=96.97  E-value=0.00025  Score=64.57  Aligned_cols=100  Identities=12%  Similarity=0.147  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC-----cccccCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH-----HSTIVST  174 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~-----~~~~~~~  174 (351)
                      .+..++..+..-|.+++.|.....                 .+|+..  ..++++|+|||+|+.....     .....+|
T Consensus       122 ~~~qi~~~l~~LH~~~ivH~Dikp-----------------~NIll~--~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t  182 (327)
T 3poz_A          122 WCVQIAKGMNYLEDRRLVHRDLAA-----------------RNVLVK--TPQHVKITDFGLAKLLGAEEKEYHAEGGKVP  182 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCG-----------------GGEEEE--ETTEEEECCTTHHHHHTTTCC-------CCC
T ss_pred             HHHHHHHHHHHHhhCCeeCCCCCh-----------------heEEEC--CCCCEEEccCcceeEccCCcccccccCCCcc
Confidence            355666666666555554443221                 223321  2456999999999753222     1234567


Q ss_pred             CCccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCC
Q psy2006         175 RHYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSE  208 (351)
Q Consensus       175 ~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~  208 (351)
                      +.|++||.+...                                              ......++.+++.+||..+|.+
T Consensus       183 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~  262 (327)
T 3poz_A          183 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADS  262 (327)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTBCHHHHHHHHHHTCSCGGG
T ss_pred             ccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcCCCCCCCccCCHHHHHHHHHHcCCChhh
Confidence            789999943211                                              1112356889999999999999


Q ss_pred             CCChhhhhcC
Q psy2006         209 RISLSEALRH  218 (351)
Q Consensus       209 R~t~~e~l~~  218 (351)
                      |||+.+++.+
T Consensus       263 Rps~~ell~~  272 (327)
T 3poz_A          263 RPKFRELIIE  272 (327)
T ss_dssp             SCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999998754

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=96.95  E-value=0.00052  Score=63.97  Aligned_cols=69  Identities=17%  Similarity=0.201  Sum_probs=42.0

Q ss_pred             CCCeEEeecCCcccCCCC-------cccccCCCCccCCccccCC------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-------HSTIVSTRHYRAPERYMAS------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-------~~~~~~~~~~~~pe~~~~~------------------------------------  186 (351)
                      .++++|+|||+++.....       .....+|+.|++||.+...                                    
T Consensus       228 ~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~  307 (373)
T 3c1x_A          228 KFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITV  307 (373)
T ss_dssp             TCCEEECCC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHH
T ss_pred             CCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHH
Confidence            457999999999753221       1234567789999943211                                    


Q ss_pred             ----------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 ----------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 ----------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                                +....+.+.++|.+||..+|.+|||+.++++.
T Consensus       308 ~~~~~~~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~  349 (373)
T 3c1x_A          308 YLLQGRRLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  349 (373)
T ss_dssp             HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHcCCCCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                      01123568899999999999999999998653

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=96.95  E-value=0.00043  Score=62.27  Aligned_cols=69  Identities=22%  Similarity=0.315  Sum_probs=49.5

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccC-----------------------C---------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMA-----------------------S---------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~-----------------------~---------------  186 (351)
                      .++++|+|||+++.....     .....+|+.|++||.+..                       .               
T Consensus       184 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~  263 (316)
T 2xir_A          184 KNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRR  263 (316)
T ss_dssp             GGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHH
T ss_pred             CCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccchhHHHHHH
Confidence            356999999999763222     123457888999994211                       1               


Q ss_pred             ---------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 ---------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 ---------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                               ....++++.++|.+||..+|.+|||+.+++.+
T Consensus       264 ~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  304 (316)
T 2xir_A          264 LKEGTRMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  304 (316)
T ss_dssp             HHHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             hccCccCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                     01123578899999999999999999998764

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=96.93  E-value=0.00055  Score=60.73  Aligned_cols=68  Identities=18%  Similarity=0.332  Sum_probs=48.6

Q ss_pred             CCCeEEeecCCcccCCCCc----ccccCCCCccCCccccCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHH----STIVSTRHYRAPERYMAS---------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~----~~~~~~~~~~~pe~~~~~---------------------------------------  186 (351)
                      .+.++|+|||++.......    ....+++.|++||.+...                                       
T Consensus       147 ~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~  226 (288)
T 3kfa_A          147 NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLE  226 (288)
T ss_dssp             GGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHH
T ss_pred             CCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHh
Confidence            3469999999997644332    224567789999943210                                       


Q ss_pred             -------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 -------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 -------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                             ....++.+.+++.+||..+|.+|||+.++++
T Consensus       227 ~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~  264 (288)
T 3kfa_A          227 KDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  264 (288)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHH
Confidence                   0112356889999999999999999999865

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=96.93  E-value=0.00032  Score=63.09  Aligned_cols=68  Identities=22%  Similarity=0.350  Sum_probs=41.7

Q ss_pred             CCCeEEeecCCcccCCCC---cccccCCCCccCCccccCCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH---HSTIVSTRHYRAPERYMASD---------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~---~~~~~~~~~~~~pe~~~~~~---------------------------------------  187 (351)
                      .++++|+|||++......   .....+++.|++||.+....                                       
T Consensus       172 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~  251 (310)
T 2wqm_A          172 TGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIE  251 (310)
T ss_dssp             TSCEEECCC------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHH
T ss_pred             CCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhh
Confidence            567999999999753322   23457899999999542210                                       


Q ss_pred             ---------hhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         188 ---------DEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       188 ---------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                               ...++++.++|.+||..||.+|||+.+++.
T Consensus       252 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~  290 (310)
T 2wqm_A          252 QCDYPPLPSDHYSEELRQLVNMCINPDPEKRPDVTYVYD  290 (310)
T ss_dssp             TTCSCCCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cccCCCCcccccCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                     112356889999999999999999999865

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=96.93  E-value=0.00035  Score=62.81  Aligned_cols=69  Identities=17%  Similarity=0.244  Sum_probs=49.1

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccC-----------------------C---------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMA-----------------------S---------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~-----------------------~---------------  186 (351)
                      .++++|+|||+++.....     .....+++.|++||.+..                       .               
T Consensus       186 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~  265 (314)
T 2ivs_A          186 GRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPPERLFNLL  265 (314)
T ss_dssp             TTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHH
T ss_pred             CCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHh
Confidence            456999999999754322     123456778999993211                       0               


Q ss_pred             --------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 --------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 --------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                              ....++++.++|.+||..||.+|||+.+++++
T Consensus       266 ~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~  305 (314)
T 2ivs_A          266 KTGHRMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKD  305 (314)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             hcCCcCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                    01223678899999999999999999998653

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=96.91  E-value=0.0004  Score=63.29  Aligned_cols=27  Identities=7%  Similarity=0.126  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      +.+.+++.+||..||.+|||+.+++++
T Consensus       304 ~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          304 RVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             HHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHhccChhhCCCHHHHHHH
Confidence            457789999999999999999998754

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=96.86  E-value=0.00055  Score=62.41  Aligned_cols=105  Identities=14%  Similarity=0.181  Sum_probs=70.2

Q ss_pred             CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc----ccccccccCCCCeEEeecCCcccCC----
Q psy2006          94 LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK----KKREVRRVRRCDIRLIDFGSATFDD----  165 (351)
Q Consensus        94 ~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~~i~h~d~k~~ni~l~Dfg~s~~~~----  165 (351)
                      ..+++..+..++.|++.|            +.++     +.....|.    .+|+..  ..++++|+|||+++...    
T Consensus       169 ~~l~~~~~~~i~~qi~~~------------l~~L-----H~~~ivH~Dlkp~NIl~~--~~~~~kl~Dfg~~~~~~~~~~  229 (343)
T 1luf_A          169 PPLSCAEQLCIARQVAAG------------MAYL-----SERKFVHRDLATRNCLVG--ENMVVKIADFGLSRNIYSADY  229 (343)
T ss_dssp             CCCCHHHHHHHHHHHHHH------------HHHH-----HHTTCCCSCCSGGGEEEC--GGGCEEECCCSCHHHHTGGGC
T ss_pred             CCCCHHHHHHHHHHHHHH------------HHHH-----HhCCeecCCCCcceEEEC--CCCeEEEeecCCCcccccCcc
Confidence            468999999999999998            2222     22345553    233322  24579999999996522    


Q ss_pred             -CCcccccCCCCccCCccccC-----------------------C-----------------------ChhhHHHHHHHH
Q psy2006         166 -EHHSTIVSTRHYRAPERYMA-----------------------S-----------------------DDEEHRQLFDLI  198 (351)
Q Consensus       166 -~~~~~~~~~~~~~~pe~~~~-----------------------~-----------------------~~~~~~~~~~~i  198 (351)
                       .......+|+.|++||.+..                       .                       ....+.++.++|
T Consensus       230 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  309 (343)
T 1luf_A          230 YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNLM  309 (343)
T ss_dssp             BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHH
T ss_pred             ccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCChHHHHHHHhCCCcCCCCCCCCHHHHHHH
Confidence             12233567889999994321                       1                       011235688999


Q ss_pred             HHhhccCCCCCCChhhhhc
Q psy2006         199 SKMLEYEPSERISLSEALR  217 (351)
Q Consensus       199 ~~~L~~~p~~R~t~~e~l~  217 (351)
                      .+||..||.+|||+.++++
T Consensus       310 ~~~l~~~p~~Rps~~~~~~  328 (343)
T 1luf_A          310 RLCWSKLPADRPSFCSIHR  328 (343)
T ss_dssp             HHHTCSSGGGSCCHHHHHH
T ss_pred             HHHcccCcccCCCHHHHHH
Confidence            9999999999999998864

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=96.86  E-value=0.00045  Score=62.77  Aligned_cols=71  Identities=14%  Similarity=0.207  Sum_probs=50.2

Q ss_pred             CCCeEEeecCCcccCC-----CCcccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~-----~~~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      ...++|+|||++....     .......+++.|++||.+...                                      
T Consensus       179 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~  258 (327)
T 2yfx_A          179 GRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV  258 (327)
T ss_dssp             TCCEEECCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHH
T ss_pred             cceEEECccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHH
Confidence            3458999999986421     112335678899999943210                                      


Q ss_pred             --------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCC
Q psy2006         187 --------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPF  220 (351)
Q Consensus       187 --------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~  220 (351)
                              .....+.+.++|.+||..||.+|||+.+++++.|
T Consensus       259 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~  300 (327)
T 2yfx_A          259 TSGGRMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIE  300 (327)
T ss_dssp             HTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             hcCCCCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHH
Confidence                    0112256789999999999999999999998765

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=96.85  E-value=0.00096  Score=60.10  Aligned_cols=26  Identities=15%  Similarity=0.381  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      .++.++|.+||..+|.+|||+.++++
T Consensus       270 ~~l~~li~~~l~~~p~~Rpt~~~l~~  295 (319)
T 2y4i_B          270 KEISDILLFCWAFEQEERPTFTKLMD  295 (319)
T ss_dssp             TTHHHHHHHHHCSSTTTSCCHHHHHH
T ss_pred             HHHHHHHHHHhcCChhhCcCHHHHHH
Confidence            35779999999999999999999875

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=96.83  E-value=0.0015  Score=62.52  Aligned_cols=68  Identities=16%  Similarity=0.265  Sum_probs=48.0

Q ss_pred             CCCeEEeecCCcccCCCC----cccccCCCCccCCccccC-----------------------C----------------
Q psy2006         150 RCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPERYMA-----------------------S----------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~----~~~~~~~~~~~~pe~~~~-----------------------~----------------  186 (351)
                      .++++|+|||+|+.....    .....++..|+|||.+..                       .                
T Consensus       320 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~  399 (454)
T 1qcf_A          320 SLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALE  399 (454)
T ss_dssp             TCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHH
T ss_pred             CCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence            457999999999764332    122345678999994321                       0                


Q ss_pred             -------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 -------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 -------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                             +...++++.++|.+||..||.+|||+++++.
T Consensus       400 ~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~  437 (454)
T 1qcf_A          400 RGYRMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQS  437 (454)
T ss_dssp             HTCCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHH
Confidence                   0112356889999999999999999988754

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=96.83  E-value=0.00051  Score=62.24  Aligned_cols=26  Identities=19%  Similarity=0.328  Sum_probs=23.4

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      +++.++|.+||..||.+|||+.++++
T Consensus       278 ~~l~~li~~~l~~dP~~Rps~~ell~  303 (318)
T 3lxp_A          278 AEVYHLMKNCWETEASFRPTFENLIP  303 (318)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccCcCHHHHHH
Confidence            46889999999999999999999864

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=96.82  E-value=0.00051  Score=61.94  Aligned_cols=68  Identities=24%  Similarity=0.295  Sum_probs=42.6

Q ss_pred             CCCeEEeecCCcccCCCC----cccccCCCCccCCccccCCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPERYMASD--------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~----~~~~~~~~~~~~pe~~~~~~--------------------------------------  187 (351)
                      .++++|+|||++......    .....+++.|++||.+....                                      
T Consensus       170 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~  249 (309)
T 2h34_A          170 DDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLSVMGAHINQ  249 (309)
T ss_dssp             TSCEEECSCCC----------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHHHHHHHHHS
T ss_pred             CCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHHHHHHHhcc
Confidence            467999999999764322    23457899999999653210                                      


Q ss_pred             ---------hhhHHHHHHHHHHhhccCCCCCC-Chhhhhc
Q psy2006         188 ---------DEEHRQLFDLISKMLEYEPSERI-SLSEALR  217 (351)
Q Consensus       188 ---------~~~~~~~~~~i~~~L~~~p~~R~-t~~e~l~  217 (351)
                               ...++++.++|.+||..||.+|| +++++++
T Consensus       250 ~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~  289 (309)
T 2h34_A          250 AIPRPSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSA  289 (309)
T ss_dssp             CCCCGGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHH
T ss_pred             CCCCccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHH
Confidence                     01124577899999999999999 7777653

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=96.82  E-value=0.0016  Score=59.31  Aligned_cols=68  Identities=15%  Similarity=0.204  Sum_probs=43.4

Q ss_pred             CCCeEEeecCCcccCCCC------cccccCCCCccCCccccCC-------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPERYMAS-------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~------~~~~~~~~~~~~pe~~~~~-------------------------------------  186 (351)
                      .++++|+|||+++.....      .....+|+.|++||.+...                                     
T Consensus       183 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~  262 (333)
T 1mqb_A          183 NLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKA  262 (333)
T ss_dssp             TCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHH
T ss_pred             CCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHH
Confidence            567999999999763322      1123456789999943211                                     


Q ss_pred             ---------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 ---------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 ---------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                               ....++.+.++|.+||..+|.+||++.+++.
T Consensus       263 ~~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  302 (333)
T 1mqb_A          263 INDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS  302 (333)
T ss_dssp             HHTTCCCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             HHCCCcCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                     0112356889999999999999999998865

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=96.81  E-value=0.00039  Score=61.58  Aligned_cols=69  Identities=22%  Similarity=0.373  Sum_probs=47.5

Q ss_pred             CCCeEEeecCCcccCCCC----cccccCCCCccCCcccc-----------------------CCC---------------
Q psy2006         150 RCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPERYM-----------------------ASD---------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~----~~~~~~~~~~~~pe~~~-----------------------~~~---------------  187 (351)
                      .++++|+|||++......    .....+++.|++||.+.                       +..               
T Consensus       149 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~  228 (281)
T 3cc6_A          149 PECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLE  228 (281)
T ss_dssp             TTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHH
T ss_pred             CCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHh
Confidence            456999999999764332    22345677899999432                       110               


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                              ...++.+.++|.+||..+|.+|||+.+++.+
T Consensus       229 ~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  267 (281)
T 3cc6_A          229 KGDRLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCS  267 (281)
T ss_dssp             HTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHH
Confidence                    1123568899999999999999999998753

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=96.80  E-value=0.00042  Score=62.53  Aligned_cols=69  Identities=25%  Similarity=0.376  Sum_probs=50.1

Q ss_pred             CCCeEEeecCCcccCCCCc------------ccccCCCCccCCccccCCC------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHH------------STIVSTRHYRAPERYMASD------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~------------~~~~~~~~~~~pe~~~~~~------------------------------  187 (351)
                      .++++|+|||++.......            ....||+.|++||.+....                              
T Consensus       170 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~  249 (317)
T 2buj_A          170 EGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMV  249 (317)
T ss_dssp             TSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHH
T ss_pred             CCCEEEEecCcchhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhh
Confidence            5679999999986533211            1235799999999653210                              


Q ss_pred             --------------------hhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         188 --------------------DEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       188 --------------------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                                          ...++++.++|.+||..||.+|||+.+++++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  300 (317)
T 2buj_A          250 FQKGDSVALAVQNQLSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQ  300 (317)
T ss_dssp             HHTTSCHHHHHHCC--CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             hcccchhhHHhhccCCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHH
Confidence                                0123568899999999999999999998764

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=96.77  E-value=0.00043  Score=62.91  Aligned_cols=27  Identities=19%  Similarity=0.239  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      +++.++|.+||..||.+|||+.+++++
T Consensus       271 ~~l~~li~~~l~~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          271 AEVHELMKLCWAPSPQDRPSFSALGPQ  297 (327)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence            568899999999999999999998643

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=96.77  E-value=0.0004  Score=63.23  Aligned_cols=68  Identities=15%  Similarity=0.157  Sum_probs=46.4

Q ss_pred             CCCeEEeecCCcccCCCC------cccccCCCCccCCccccC-----------------------C--------------
Q psy2006         150 RCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPERYMA-----------------------S--------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~------~~~~~~~~~~~~pe~~~~-----------------------~--------------  186 (351)
                      .++++|+|||+++.....      .....+|+.|++||.+..                       .              
T Consensus       187 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~  266 (325)
T 3kul_A          187 NLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISS  266 (325)
T ss_dssp             TCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHH
T ss_pred             CCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHH
Confidence            467999999999764322      122345668999994321                       1              


Q ss_pred             ---------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 ---------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 ---------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                               ....++.+.++|.+||..||.+|||+.+++.
T Consensus       267 ~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~  306 (325)
T 3kul_A          267 VEEGYRLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVS  306 (325)
T ss_dssp             HHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHcCCCCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                     0112356889999999999999999998864

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=96.75  E-value=0.00028  Score=62.77  Aligned_cols=65  Identities=23%  Similarity=0.335  Sum_probs=47.7

Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCC---------------------------------------------
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASD---------------------------------------------  187 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~---------------------------------------------  187 (351)
                      ++|+|||++...... ....+|+.|++||.+....                                             
T Consensus       160 ~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~~~  238 (289)
T 4fvq_A          160 IKLSDPGISITVLPK-DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQLP  238 (289)
T ss_dssp             EEECCCCSCTTTSCH-HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCC
T ss_pred             eeeccCcccccccCc-cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCCCC
Confidence            899999999764332 3356788999999654210                                             


Q ss_pred             hhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         188 DEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       188 ~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      ...++++.++|.+||..||.+|||+.+++++
T Consensus       239 ~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  269 (289)
T 4fvq_A          239 APKAAELANLINNCMDYEPDHRPSFRAIIRD  269 (289)
T ss_dssp             CCSSCTTHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence            0011346689999999999999999998765

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=96.71  E-value=0.00051  Score=62.39  Aligned_cols=69  Identities=17%  Similarity=0.191  Sum_probs=47.5

Q ss_pred             CCCeEEeecCCcccCCCC--cccccCCCCccCCcccc-----------------------CC------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPERYM-----------------------AS------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~--~~~~~~~~~~~~pe~~~-----------------------~~------------------  186 (351)
                      .+.++|+|||+++.....  .....+++.|++||.+.                       +.                  
T Consensus       178 ~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~  257 (327)
T 1fvr_A          178 NYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQG  257 (327)
T ss_dssp             GGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGT
T ss_pred             CCeEEEcccCcCccccccccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcC
Confidence            356999999999753322  22345678899999321                       11                  


Q ss_pred             -----ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 -----DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 -----~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                           ....++++.++|.+||..+|.+|||+.+++.+
T Consensus       258 ~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  294 (327)
T 1fvr_A          258 YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  294 (327)
T ss_dssp             CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                 01123578899999999999999999998764

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=96.70  E-value=0.00097  Score=60.74  Aligned_cols=69  Identities=16%  Similarity=0.231  Sum_probs=49.0

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      .++++|+|||+++.....     .....+++.|++||.+...                                      
T Consensus       193 ~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~  272 (334)
T 2pvf_A          193 NNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLL  272 (334)
T ss_dssp             TCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHH
T ss_pred             CCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHHHHH
Confidence            467999999999764322     2234567789999943110                                      


Q ss_pred             --------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 --------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 --------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                              ....+.++.++|.+||..+|.+|||+.+++++
T Consensus       273 ~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  312 (334)
T 2pvf_A          273 KEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  312 (334)
T ss_dssp             HHTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             hcCCCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                    01123568899999999999999999998754

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=96.70  E-value=0.0011  Score=63.24  Aligned_cols=99  Identities=20%  Similarity=0.268  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC----cccccCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH----HSTIVSTR  175 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~----~~~~~~~~  175 (351)
                      .+..++..+..-+.+++.|.+...                 .+|+..  ..+.++|+|||+|+.....    .....++.
T Consensus       285 i~~qi~~~l~~LH~~~ivHrDlkp-----------------~Nill~--~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~  345 (452)
T 1fmk_A          285 MAAQIASGMAYVERMNYVHRDLRA-----------------ANILVG--ENLVCKVADFGLARLIEDNEYTARQGAKFPI  345 (452)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSG-----------------GGEEEC--GGGCEEECCCCTTC--------------CCG
T ss_pred             HHHHHHHHHHHHHhCCeeCCCCCh-----------------hhEEEC--CCCCEEECCCccceecCCCceecccCCcccc
Confidence            456666666666555554444222                 223221  2356999999999764322    12234667


Q ss_pred             CccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCCC
Q psy2006         176 HYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSER  209 (351)
Q Consensus       176 ~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R  209 (351)
                      .|+|||.+...                                              +...++.+.++|.+||..+|.+|
T Consensus       346 ~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R  425 (452)
T 1fmk_A          346 KWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEER  425 (452)
T ss_dssp             GGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             cccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHccCChhhC
Confidence            89999943210                                              01123567899999999999999


Q ss_pred             CChhhhhc
Q psy2006         210 ISLSEALR  217 (351)
Q Consensus       210 ~t~~e~l~  217 (351)
                      ||+++++.
T Consensus       426 pt~~~l~~  433 (452)
T 1fmk_A          426 PTFEYLQA  433 (452)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            99998865

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=96.69  E-value=0.0007  Score=63.02  Aligned_cols=68  Identities=12%  Similarity=0.166  Sum_probs=39.5

Q ss_pred             CCCeEEeecCCcccCCCCc------ccccCCCCccCCccccCC-----------------------C-------------
Q psy2006         150 RCDIRLIDFGSATFDDEHH------STIVSTRHYRAPERYMAS-----------------------D-------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~------~~~~~~~~~~~pe~~~~~-----------------------~-------------  187 (351)
                      .++++|+|||+++......      ....+++.|++||.+...                       .             
T Consensus       183 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~  262 (373)
T 2qol_A          183 NLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKA  262 (373)
T ss_dssp             TCCEEECCC----------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHH
T ss_pred             CCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            4679999999997633221      112346689999943211                       0             


Q ss_pred             ----------hhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         188 ----------DEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       188 ----------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                                ......+.+++.+||..||.+||++.++++
T Consensus       263 i~~~~~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~  302 (373)
T 2qol_A          263 VDEGYRLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVS  302 (373)
T ss_dssp             HHTTEECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHcCCCCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHH
Confidence                      111256889999999999999999998764

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=96.69  E-value=0.00068  Score=60.28  Aligned_cols=69  Identities=20%  Similarity=0.196  Sum_probs=49.3

Q ss_pred             CCCeEEeecCCcccCCCCc------ccccCCCCccCCcccc-----------------------CC--------------
Q psy2006         150 RCDIRLIDFGSATFDDEHH------STIVSTRHYRAPERYM-----------------------AS--------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~------~~~~~~~~~~~pe~~~-----------------------~~--------------  186 (351)
                      .++++|+|||+++......      ....+|+.|++||.+.                       +.              
T Consensus       146 ~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~  225 (287)
T 1u59_A          146 RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAF  225 (287)
T ss_dssp             TTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHH
T ss_pred             CCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHH
Confidence            4569999999997643221      2234578899999322                       11              


Q ss_pred             ---------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         187 ---------DDEEHRQLFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       187 ---------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                               +...++++.++|.+||..+|.+||++.+++.+
T Consensus       226 i~~~~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  266 (287)
T 1u59_A          226 IEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQR  266 (287)
T ss_dssp             HHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             HhcCCcCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                     11223678899999999999999999998765

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=96.68  E-value=0.001  Score=64.38  Aligned_cols=68  Identities=18%  Similarity=0.321  Sum_probs=48.2

Q ss_pred             CCCeEEeecCCcccCCCCc----ccccCCCCccCCccccC-----------------------C----------------
Q psy2006         150 RCDIRLIDFGSATFDDEHH----STIVSTRHYRAPERYMA-----------------------S----------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~----~~~~~~~~~~~pe~~~~-----------------------~----------------  186 (351)
                      .+.++|+|||+|+......    ....++..|++||.+..                       .                
T Consensus       354 ~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~~  433 (495)
T 1opk_A          354 NHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLE  433 (495)
T ss_dssp             GGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHH
T ss_pred             CCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence            4569999999997643321    22345678999994321                       0                


Q ss_pred             -------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 -------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 -------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                             .....+++.++|.+||..||.+|||+.++++
T Consensus       434 ~~~~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~  471 (495)
T 1opk_A          434 KDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  471 (495)
T ss_dssp             TTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHH
Confidence                   0112367889999999999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	351
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	5e-18
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	4e-10
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	1e-16
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	8e-09
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-16
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	3e-09
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	4e-16
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	9e-09
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-15
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-10
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	3e-15
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	1e-06
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	4e-15
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	1e-07
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	7e-15
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-07
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	3e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	2e-06
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	4e-14
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-10
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	5e-14
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-07
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	6e-14
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	4e-11
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	3e-13
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	7e-10
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	9e-13
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	9e-10
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-12
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	2e-09
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	1e-11
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	6e-08
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-11
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	2e-10
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-06
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-11
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	2e-06
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-10
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	1e-07
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-10
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	4e-05
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-10
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	2e-07
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	3e-09
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	5e-05
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-08
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	7e-05
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	1e-08
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	4e-06
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-08
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	9e-07
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-08
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	2e-05
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	2e-08
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	7e-06
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	3e-08
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	8e-04
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	9e-08
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	4e-07
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	6e-07
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-07
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	8e-05
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	2e-07
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	5e-07
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-05
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-07
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	2e-05
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	3e-07
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	2e-04
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	4e-07
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	4e-04
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-07
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	4e-05
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	4e-07
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	6e-05
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	4e-07
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	6e-06
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	9e-06
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	5e-07
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	2e-06
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	8e-06
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-07
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	5e-04
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	7e-07
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	2e-05
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	8e-07
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-04
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-06
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	8e-06
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	6e-05
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-06
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	0.001
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-06
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	1e-06
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	0.001
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	1e-06
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	3e-04
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-06
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-06
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	4e-06
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	5e-06
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	8e-06
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	9e-06
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	6e-04
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-05
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	1e-05
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-04
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-05
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	4e-05
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-04
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	0.001
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	1e-04
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	1e-04
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-04
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-04
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-04
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-04
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	6e-04
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	6e-04
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	0.001
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	0.003

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.2 bits (200), Expect = 5e-18
 Identities = 56/282 (19%), Positives = 97/282 (34%), Gaps = 78/282 (27%)

Query: 16  VVYEV-----DSVVALKIIK--NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD 68
            V          +VA+K I    +E    +   EI  L KI  K PN     V + D ++
Sbjct: 24  EVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKI--KHPN----IVALDDIYE 77

Query: 69  YHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHM 127
             GH+ +  +++ G  +FD + E  +          + +Q++ A            V+++
Sbjct: 78  SGGHLYLIMQLVSGGELFDRIVEKGFYT--ERDASRLIFQVLDA------------VKYL 123

Query: 128 SYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHH--STIVSTRHYRAPERYM- 184
               I   D   +            I + DFG +  +D     ST   T  Y APE    
Sbjct: 124 HDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQ 183

Query: 185 -----ASD-------------------DEEHRQLF-----------------------DL 197
                A D                   DE   +LF                       D 
Sbjct: 184 KPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDF 243

Query: 198 ISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI 239
           I  ++E +P +R +  +AL+HP+     +  +   Q+ +++I
Sbjct: 244 IRHLMEKDPEKRFTCEQALQHPWIAGDTALDKNIHQSVSEQI 285

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.7 bits (139), Expect = 4e-10
 Identities = 41/222 (18%), Positives = 74/222 (33%), Gaps = 47/222 (21%)

Query: 123 QVRHMSYQLIYAV---------DYNNKKKREVRRVRRCD----IRLIDFGSATFDDEHHS 169
                  Q + A+               + E+  + +      + L D     ++   H 
Sbjct: 27  LAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDI----YESGGHL 82

Query: 170 TIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERIS----LSEALRHPFFDKLP 225
            ++         + ++  +     LFD I +   Y   +       + +A+++     L 
Sbjct: 83  YLIM--------QLVSGGE-----LFDRIVEKGFYTERDASRLIFQVLDAVKY-----LH 124

Query: 226 SSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH--STIVSTRHYRAP 283
               VH      R L   + L         I + DFG +  +D     ST   T  Y AP
Sbjct: 125 DLGIVH------RDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAP 178

Query: 284 EVILELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYH 325
           EV+ +  +++  D WSIG I + L  G      +   K F  
Sbjct: 179 EVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQ 220

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 77.8 bits (191), Expect = 1e-16
 Identities = 45/271 (16%), Positives = 85/271 (31%), Gaps = 77/271 (28%)

Query: 16  VVYEV-----DSVVALKII-KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY 69
           VV+         V   K I       +   + EI+ + ++    P      + + D F+ 
Sbjct: 44  VVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQL--HHPK----LINLHDAFED 97

Query: 70  HGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMS 128
              M +  E L G  +FD +   +Y   S  +V +   Q     +  ++         + 
Sbjct: 98  KYEMVLILEFLSGGELFDRIAAEDY-KMSEAEVINYMRQACEGLK--HMHEHSIVHLDIK 154

Query: 129 YQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPERYMAS 186
            + I                +   +++IDFG AT    DE      +T  + APE     
Sbjct: 155 PENIM-----------CETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDRE 203

Query: 187 --------------------------DDEEHRQLF----------------------DLI 198
                                      +++   L                       D I
Sbjct: 204 PVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFI 263

Query: 199 SKMLEYEPSERISLSEALRHPFFDKLPSSVR 229
             +L+ EP +R+++ +AL HP+     S++ 
Sbjct: 264 KNLLQKEPRKRLTVHDALEHPWLKGDHSNLT 294

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 53.9 bits (129), Expect = 8e-09
 Identities = 41/241 (17%), Positives = 88/241 (36%), Gaps = 41/241 (17%)

Query: 123 QVRHMSYQLIYAVDYNNKK--------KREVRRVRRCD----IRLIDFGSATFDDEHHST 170
           +    +   ++   + N          K E+  + +      I L D     F+D++   
Sbjct: 47  RCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDA----FEDKYEMV 102

Query: 171 IVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR- 229
           ++          +++  +     LFD I+        E   +SEA    +  +    ++ 
Sbjct: 103 LILE--------FLSGGE-----LFDRIAA-------EDYKMSEAEVINYMRQACEGLKH 142

Query: 230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVIL 287
           +H  +     +    +++    +   +++IDFG AT    DE      +T  + APE++ 
Sbjct: 143 MHEHSIVHLDIK-PENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVD 201

Query: 288 ELGWAQPCDVWSIGCIIFELYLGITLMARKTKTK-YFYHGKLDWDEKGTAGRYVRENCKP 346
                   D+W+IG + + L  G++  A +   +      + DW+    A   V    K 
Sbjct: 202 REPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKD 261

Query: 347 L 347
            
Sbjct: 262 F 262

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 76.3 bits (187), Expect = 3e-16
 Identities = 47/271 (17%), Positives = 86/271 (31%), Gaps = 77/271 (28%)

Query: 16  VVYEV-----DSVVALKII-KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY 69
           VV+ V      +  A K +    E  +E  R EI  +  +  + P      V + D F+ 
Sbjct: 41  VVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVL--RHPT----LVNLHDAFED 94

Query: 70  HGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMS 128
              M + +E + G  +F+ + + +    S D+      Q+               + HM 
Sbjct: 95  DNEMVMIYEFMSGGELFEKVADEHN-KMSEDEAVEYMRQVCKG------------LCHMH 141

Query: 129 YQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPERYM-- 184
                 +D    +       R  +++LIDFG        +       T  + APE     
Sbjct: 142 ENNYVHLDLKP-ENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGK 200

Query: 185 ----ASD--------------------DEEHRQLF----------------------DLI 198
                +D                    + +   L                       D I
Sbjct: 201 PVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFI 260

Query: 199 SKMLEYEPSERISLSEALRHPFFDKLPSSVR 229
            K+L  +P+ R+++ +AL HP+     +  R
Sbjct: 261 RKLLLADPNTRMTIHQALEHPWLTPGNAPGR 291

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 55.5 bits (133), Expect = 3e-09
 Identities = 37/241 (15%), Positives = 82/241 (34%), Gaps = 41/241 (17%)

Query: 123 QVRHMSYQLIYAV--------DYNNKKKREVRRVRRCD----IRLIDFGSATFDDEHHST 170
           +V   +    +A               ++E++ +        + L D     F+D++   
Sbjct: 44  RVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDA----FEDDNEMV 99

Query: 171 IVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR- 229
           ++          +M        +LF+ ++        E   +SE     +  ++   +  
Sbjct: 100 MIY--------EFM-----SGGELFEKVAD-------EHNKMSEDEAVEYMRQVCKGLCH 139

Query: 230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVIL 287
           +H        L    +++    R  +++LIDFG        +       T  + APEV  
Sbjct: 140 MHENNYVHLDLKP-ENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAE 198

Query: 288 ELGWAQPCDVWSIGCIIFELYLGITLMARKTKTK-YFYHGKLDWDEKGTAGRYVRENCKP 346
                   D+WS+G + + L  G++    +   +        DW+   +A   + E+ K 
Sbjct: 199 GKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKD 258

Query: 347 L 347
            
Sbjct: 259 F 259

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.1 bits (184), Expect = 4e-16
 Identities = 48/273 (17%), Positives = 82/273 (30%), Gaps = 92/273 (33%)

Query: 16  VVYEV-----DSVVALKIIK-------NVEKYREAARLEINALQKIGEKDPNGRHLCVKM 63
            VY       +  VA+K ++                 +E+  L+K+           +++
Sbjct: 19  SVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG----VIRL 74

Query: 64  LDWFDYHGHMCIAFEIL--GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSL 121
           LDWF+      +  E       +FDF+ E   L                           
Sbjct: 75  LDWFERPDSFVLILERPEPVQDLFDFITERGALQ-------------------------E 109

Query: 122 DQVRHMSYQLIYAVDYNNKKKREVRRVR---------RCDIRLIDFGSATF-DDEHHSTI 171
           +  R   +Q++ AV + +      R ++         R +++LIDFGS     D  ++  
Sbjct: 110 ELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDF 169

Query: 172 VSTRHYRAPERYM----------------------------ASDDEEHR----------- 192
             TR Y  PE                                 D+E  R           
Sbjct: 170 DGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSS 229

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFFDKLP 225
           +   LI   L   PS+R +  E   HP+   + 
Sbjct: 230 ECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVL 262

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 9e-09
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 247 VMRRVRRCDIRLIDFGSATF-DDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCII 304
           ++  + R +++LIDFGS     D  ++    TR Y  PE I       +   VWS+G ++
Sbjct: 141 ILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILL 200

Query: 305 FELYLG 310
           +++  G
Sbjct: 201 YDMVCG 206

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.5 bits (180), Expect = 2e-15
 Identities = 39/268 (14%), Positives = 89/268 (33%), Gaps = 84/268 (31%)

Query: 16  VVYEV-----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH 70
           +V+             K +K     +   + EI+ L     +  N     + + + F+  
Sbjct: 20  IVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIA--RHRN----ILHLHESFESM 73

Query: 71  GHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLI----YAKENNYLPYSLDQVR 125
             + + FE + GL +F+ +  + +   +  ++    +Q+     +   +N   + +    
Sbjct: 74  EELVMIFEFISGLDIFERINTSAF-ELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPEN 132

Query: 126 HMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPERY 183
            +                  +  R   I++I+FG A      ++   + +   Y APE +
Sbjct: 133 II-----------------YQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVH 175

Query: 184 M------ASD-------------------DEEHRQLF----------------------- 195
                  A+D                    E ++Q+                        
Sbjct: 176 QHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAM 235

Query: 196 DLISKMLEYEPSERISLSEALRHPFFDK 223
           D + ++L  E   R++ SEAL+HP+  +
Sbjct: 236 DFVDRLLVKERKSRMTASEALQHPWLKQ 263

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (138), Expect = 5e-10
 Identities = 35/219 (15%), Positives = 81/219 (36%), Gaps = 24/219 (10%)

Query: 123 QVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPER 182
           +    S +  Y   +   K  +   V++ +I +++          H  I+          
Sbjct: 23  RCVETSSKKTYMAKFVKVKGTDQVLVKK-EISILNIA-------RHRNILHLHESFESME 74

Query: 183 YMASDDE--EHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR-VHAQTQADRI 239
            +    E      +F+ I+            L+E     +  ++  +++ +H+       
Sbjct: 75  ELVMIFEFISGLDIFERINT-------SAFELNEREIVSYVHQVCEALQFLHSHNIGHFD 127

Query: 240 LSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILELGWAQPCDV 297
           +   + +   R R   I++I+FG A      ++   + +   Y APEV      +   D+
Sbjct: 128 IRPENIIYQTR-RSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDM 186

Query: 298 WSIGCIIFELYLGITLMARKTKTKYFY---HGKLDWDEK 333
           WS+G +++ L  GI     +T  +      + +  +DE+
Sbjct: 187 WSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEE 225

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (179), Expect = 3e-15
 Identities = 48/267 (17%), Positives = 82/267 (30%), Gaps = 82/267 (30%)

Query: 16  VVYEV-----DSVVALKII-KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY 69
            VY+        + A K+I    E+  E   +EI+ L       PN     VK+LD F Y
Sbjct: 27  KVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASC--DHPN----IVKLLDAFYY 80

Query: 70  HGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSY 129
             ++ I  E       D +      P +  Q++ +  Q + A               ++Y
Sbjct: 81  ENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDA---------------LNY 125

Query: 130 QLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPERYMAS 186
                + + + K   +      DI+L DFG +       +   + + T ++ APE  M  
Sbjct: 126 LHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCE 185

Query: 187 DDEEHR----------------------------------------------------QL 194
             ++                                                        
Sbjct: 186 TSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNF 245

Query: 195 FDLISKMLEYEPSERISLSEALRHPFF 221
            D + K LE     R + S+ L+HPF 
Sbjct: 246 KDFLKKCLEKNVDARWTTSQLLQHPFV 272

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)

Query: 252 RRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQ-----PCDVWSIGCI 303
              DI+L DFG +       +   + + T ++ APEV++             DVWS+G  
Sbjct: 145 LDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGIT 204

Query: 304 IFELYLG 310
           + E+   
Sbjct: 205 LIEMAEI 211

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 4e-15
 Identities = 41/269 (15%), Positives = 79/269 (29%), Gaps = 84/269 (31%)

Query: 16  VVYEV-----DSVVALKII--KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD 68
            V        +  VA+KI+  K      E  + EI   + +     N     VK      
Sbjct: 20  EVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKML--NHEN----VVKFYGHRR 73

Query: 69  YHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHM 127
                 +  E   G  +FD ++ +  +P      +   +QL+                 +
Sbjct: 74  EGNIQYLFLEYCSGGELFDRIEPDIGMP--EPDAQRFFHQLMAG---------------V 116

Query: 128 SYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATF-----DDEHHSTIVSTRHYRAPE- 181
            Y     + + + K   +    R ++++ DFG AT       +   + +  T  Y APE 
Sbjct: 117 VYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPEL 176

Query: 182 --------------------------RYMASDDEEHRQLF-------------------- 195
                                             +  Q +                    
Sbjct: 177 LKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAP 236

Query: 196 -DLISKMLEYEPSERISLSEALRHPFFDK 223
             L+ K+L   PS RI++ +  +  +++K
Sbjct: 237 LALLHKILVENPSARITIPDIKKDRWYNK 265

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)

Query: 253 RCDIRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFE 306
           R ++++ DFG AT       +   + +  T  Y APE++    + A+P DVWS G ++  
Sbjct: 139 RDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTA 198

Query: 307 LYLG 310
           +  G
Sbjct: 199 MLAG 202

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.0 bits (176), Expect = 7e-15
 Identities = 41/298 (13%), Positives = 92/298 (30%), Gaps = 84/298 (28%)

Query: 16  VVYEV-----DSVVALKIIK----NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDW 66
            VY         VVA+K +        +  +    E+  LQK+  + PN     ++    
Sbjct: 30  AVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL--RHPN----TIQYRGC 83

Query: 67  FDYHGHMCIAFE-ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVR 125
           +       +  E  LG +           P    ++  +++  +              + 
Sbjct: 84  YLREHTAWLVMEYCLGSASDLLEVHKK--PLQEVEIAAVTHGALQG------------LA 129

Query: 126 HMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMA 185
           ++    +   D    K   +       ++L DFGSA+     + + V T ++ APE  +A
Sbjct: 130 YLHSHNMIHRDV---KAGNILLSEPGLVKLGDFGSASIMAPAN-SFVGTPYWMAPEVILA 185

Query: 186 SDDEEH-------------------------------------------------RQLFD 196
            D+ ++                                                     +
Sbjct: 186 MDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRN 245

Query: 197 LISKMLEYEPSERISLSEALRHPFFDK-LPSSVRVHAQTQADRILSSVSSLVMRRVRR 253
            +   L+  P +R +    L+H F  +  P +V +    +    +  + +L  R++++
Sbjct: 246 FVDSCLQKIPQDRPTSEVLLKHRFVLRERPPTVIMDLIQRTKDAVRELDNLQYRKMKK 303

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 252 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQ---PCDVWSIGCIIFELY 308
               ++L DFGSA+     + + V T ++ APEVIL +   Q     DVWS+G    EL 
Sbjct: 150 EPGLVKLGDFGSASIMAPAN-SFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELA 208

Query: 309 LGITLMARKTKTKYFYH 325
                +         YH
Sbjct: 209 ERKPPLFNMNAMSALYH 225

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 69.7 bits (170), Expect = 3e-14
 Identities = 49/288 (17%), Positives = 88/288 (30%), Gaps = 110/288 (38%)

Query: 16  VVYEV-----DSVVALKIIK----------NVEKYREAARLEINALQKIGEKDPNGRHLC 60
           VV            A+KII            V++ REA   E++ L+K+     +G    
Sbjct: 18  VVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKV-----SGHPNI 72

Query: 61  VKMLDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPY 119
           +++ D ++ +    + F+++    +FD+L E   L                         
Sbjct: 73  IQLKDTYETNTFFFLVFDLMKKGELFDYLTEKVTLS------------------------ 108

Query: 120 SLDQVRHMSYQLIYAVDYNNKKKREVRRVR--------RCDIRLIDFGSATF--DDEHHS 169
              + R +   L+  +   +K     R ++          +I+L DFG +      E   
Sbjct: 109 -EKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLR 167

Query: 170 TIVSTRHYRAPERYMAS-------------------------------DDEEHRQLFDLI 198
            +  T  Y APE    S                                  +   +  +I
Sbjct: 168 EVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMI 227

Query: 199 -----------------------SKMLEYEPSERISLSEALRHPFFDK 223
                                  S+ L  +P +R +  EAL HPFF +
Sbjct: 228 MSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQ 275

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 40/203 (19%), Positives = 74/203 (36%), Gaps = 27/203 (13%)

Query: 123 QVRHMSYQLIYAV------DYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRH 176
           +  H      YAV         +    EV+ +R   ++ +D          +   +   +
Sbjct: 21  RCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDI-LRKVSGHPNIIQLKDTY 79

Query: 177 YRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR-VHAQTQ 235
                 ++  D  +  +LFD +++        +++LSE         L   +  +H    
Sbjct: 80  ETNTFFFLVFDLMKKGELFDYLTE--------KVTLSEKETRKIMRALLEVICALHKLNI 131

Query: 236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVIL------ 287
             R L   + L+       +I+L DFG +      E    +  T  Y APE+I       
Sbjct: 132 VHRDLKPENILLDDD---MNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDN 188

Query: 288 ELGWAQPCDVWSIGCIIFELYLG 310
             G+ +  D+WS G I++ L  G
Sbjct: 189 HPGYGKEVDMWSTGVIMYTLLAG 211

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 4e-14
 Identities = 43/272 (15%), Positives = 92/272 (33%), Gaps = 85/272 (31%)

Query: 16  VVYEV-----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY- 69
            V ++         ALK++++  K R     E+    +   + P+     V+++D ++  
Sbjct: 27  KVLQIFNKRTQEKFALKMLQDCPKARR----EVELHWRA-SQCPH----IVRIVDVYENL 77

Query: 70  ---HGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVR 125
                 + I  E L G  +F  +++     ++  +   +   +  A            ++
Sbjct: 78  YAGRKCLLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEA------------IQ 125

Query: 126 HMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHS--TIVSTRHYRAPE-- 181
           ++    I   D   +      +     ++L DFG A     H+S  T   T +Y APE  
Sbjct: 126 YLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVL 185

Query: 182 ---RYMASDDEE-----------------------------------------------H 191
              +Y  S D                                                  
Sbjct: 186 GPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNPEWSEVS 245

Query: 192 RQLFDLISKMLEYEPSERISLSEALRHPFFDK 223
            ++  LI  +L+ EP++R++++E + HP+  +
Sbjct: 246 EEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ 277

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 2e-10
 Identities = 42/199 (21%), Positives = 75/199 (37%), Gaps = 30/199 (15%)

Query: 123 QVRHMSYQLIYAV---DYNNKKKREVRRVRRCD-----IRLIDFGSATFDDEHHSTIVST 174
           Q+ +   Q  +A+       K +REV    R       +R++D     +       IV  
Sbjct: 30  QIFNKRTQEKFALKMLQDCPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLLIV-- 87

Query: 175 RHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR-VHAQ 233
                    +   +     LF  I            + +E         +  +++ +H+ 
Sbjct: 88  ------MECLDGGE-----LFSRIQDR------GDQAFTEREASEIMKSIGEAIQYLHSI 130

Query: 234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHS--TIVSTRHYRAPEVILELGW 291
             A R +   + L   +     ++L DFG A     H+S  T   T +Y APEV+    +
Sbjct: 131 NIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKY 190

Query: 292 AQPCDVWSIGCIIFELYLG 310
            + CD+WS+G I++ L  G
Sbjct: 191 DKSCDMWSLGVIMYILLCG 209

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.2 bits (169), Expect = 5e-14
 Identities = 44/271 (16%), Positives = 84/271 (30%), Gaps = 97/271 (35%)

Query: 16  VVYEV-----DSVVALKII-KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY 69
            VY          VA++ +    +  +E    EI  +++   K+PN     V  LD +  
Sbjct: 35  TVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMREN--KNPN----IVNYLDSYLV 88

Query: 70  HGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMS 128
              + +  E L G S+ D + E                                Q+  + 
Sbjct: 89  GDELWVVMEYLAGGSLTDVVTET--------------------------CMDEGQIAAVC 122

Query: 129 YQLIYAVDYNNKKKREVRRVR--------RCDIRLIDFGSATF---DDEHHSTIVSTRHY 177
            + + A+++ +  +   R ++           ++L DFG       +    ST+V T ++
Sbjct: 123 RECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYW 182

Query: 178 RAPERYM------ASD--------------------DEEHRQLF---------------- 195
            APE           D                    +   R L+                
Sbjct: 183 MAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKL 242

Query: 196 -----DLISKMLEYEPSERISLSEALRHPFF 221
                D +++ L+ +  +R S  E L+H F 
Sbjct: 243 SAIFRDFLNRCLDMDVEKRGSAKELLQHQFL 273

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 252 RRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY 308
               ++L DFG       +    ST+V T ++ APEV+    +    D+WS+G +  E+ 
Sbjct: 151 MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMI 210

Query: 309 LGITLMARKTKTKYFY 324
            G      +   +  Y
Sbjct: 211 EGEPPYLNENPLRALY 226

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (168), Expect = 6e-14
 Identities = 37/268 (13%), Positives = 76/268 (28%), Gaps = 92/268 (34%)

Query: 16  VVYEV-----DSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDW 66
            VY         ++ALK++              R E+     +           +++  +
Sbjct: 21  NVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLR------HPNILRLYGY 74

Query: 67  FDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRH 126
           F     + +  E                        +     +Y +      +   +   
Sbjct: 75  FHDATRVYLILE------------------------YAPLGTVYRELQKLSKFDEQRTAT 110

Query: 127 MSYQLIYAVDYNNKKKREVRRV--------RRCDIRLIDFGSATF-DDEHHSTIVSTRHY 177
              +L  A+ Y + K+   R +           ++++ DFG +        +T+  T  Y
Sbjct: 111 YITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDY 170

Query: 178 RAPERYM------ASD-------------------DEEHRQLF----------------- 195
             PE           D                      +++ +                 
Sbjct: 171 LPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEG 230

Query: 196 --DLISKMLEYEPSERISLSEALRHPFF 221
             DLIS++L++ PS+R  L E L HP+ 
Sbjct: 231 ARDLISRLLKHNPSQRPMLREVLEHPWI 258

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (146), Expect = 4e-11
 Identities = 35/195 (17%), Positives = 72/195 (36%), Gaps = 25/195 (12%)

Query: 123 QVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHY--RAP 180
             R    + I A+    K + E   V     R ++  S       H  I+    Y   A 
Sbjct: 24  LAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHL----RHPNILRLYGYFHDAT 79

Query: 181 ERYMASDDEEHRQLFDLISKMLEYEPSERIS----LSEALRHPFFDKLPSSVRVHAQTQA 236
             Y+  +      ++  + K+ +++     +    L+ AL +            H++   
Sbjct: 80  RVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSY-----------CHSKRVI 128

Query: 237 DRILSSVSSLVMRRVRRCDIRLIDFGSATF-DDEHHSTIVSTRHYRAPEVILELGWAQPC 295
            R +   + L+       ++++ DFG +        +T+  T  Y  PE+I      +  
Sbjct: 129 HRDIKPENLLL---GSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKV 185

Query: 296 DVWSIGCIIFELYLG 310
           D+WS+G + +E  +G
Sbjct: 186 DLWSLGVLCYEFLVG 200

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (163), Expect = 3e-13
 Identities = 39/267 (14%), Positives = 80/267 (29%), Gaps = 80/267 (29%)

Query: 16  VVYEV-----DSVVALKIIKN----VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDW 66
            V+       +   A+K +K     ++   E   +E   L     + P        M   
Sbjct: 17  KVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW-EHPF----LTHMFCT 71

Query: 67  FDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVR 125
           F    ++    E L G  +   ++  +   + L +    + ++I                
Sbjct: 72  FQTKENLFFVMEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILG-------------- 115

Query: 126 HMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPER 182
            + +     + Y + K   +   +   I++ DFG        D   +T   T  Y APE 
Sbjct: 116 -LQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEI 174

Query: 183 YMAS-------------------------DDEEHRQLF-------------------DLI 198
            +                             ++  +LF                   DL+
Sbjct: 175 LLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRWLEKEAKDLL 234

Query: 199 SKMLEYEPSERISL-SEALRHPFFDKL 224
            K+   EP +R+ +  +  +HP F ++
Sbjct: 235 VKLFVREPEKRLGVRGDIRQHPLFREI 261

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 7e-10
 Identities = 34/212 (16%), Positives = 68/212 (32%), Gaps = 18/212 (8%)

Query: 124 VRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHY--RAPE 181
                    +A+    K    +     C +      S  +    H  +            
Sbjct: 21  AEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAW---EHPFLTHMFCTFQTKEN 77

Query: 182 RYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS 241
            +   +      L   I    +++ S     +  +       L S   V+   + D IL 
Sbjct: 78  LFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGL-QFLHSKGIVYRDLKLDNILL 136

Query: 242 SVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVW 298
                     +   I++ DFG        D   +T   T  Y APE++L   +    D W
Sbjct: 137 D---------KDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWW 187

Query: 299 SIGCIIFELYLGITLMARKTKTKYFYHGKLDW 330
           S G +++E+ +G +    + + + F+  ++D 
Sbjct: 188 SFGVLLYEMLIGQSPFHGQDEEELFHSIRMDN 219

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 9e-13
 Identities = 37/268 (13%), Positives = 81/268 (30%), Gaps = 84/268 (31%)

Query: 16  VVYEV-----DSVVALKIIKN---VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF 67
            VY+         VA   +++    +  R+  + E   L+ +  + PN     V+  D +
Sbjct: 24  TVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL--QHPN----IVRFYDSW 77

Query: 68  ----DYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLD 122
                    + +  E++   ++  +LK    +   +  +R    Q++   +  +L     
Sbjct: 78  ESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMK--IKVLRSWCRQILKGLQ--FLHTRTP 133

Query: 123 QVRHMSYQL--IYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHS-TIVSTRHYRA 179
            + H   +   I+                   +++ D G AT      +  ++ T  + A
Sbjct: 134 PIIHRDLKCDNIFITGPTGS------------VKIGDLGLATLKRASFAKAVIGTPEFMA 181

Query: 180 PERYM-----ASD-----------------------------------------DEEHRQ 193
           PE Y      + D                                              +
Sbjct: 182 PEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPE 241

Query: 194 LFDLISKMLEYEPSERISLSEALRHPFF 221
           + ++I   +     ER S+ + L H FF
Sbjct: 242 VKEIIEGCIRQNKDERYSIKDLLNHAFF 269

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 9e-10
 Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 28/175 (16%)

Query: 142 KREVRRVRRCD----IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDL 197
           K E   ++       +R  D   +T   +    +V           M S       L   
Sbjct: 56  KEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV--------TELMTSGT-----LKTY 102

Query: 198 ISKMLEYEPSERISLS-EALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDI 256
           + +    +     S   + L+   F    +   +H   + D I  +  +          +
Sbjct: 103 LKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPT--------GSV 154

Query: 257 RLIDFGSATFDDEHHS-TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           ++ D G AT      +  ++ T  + APE+  E  + +  DV++ G  + E+   
Sbjct: 155 KIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATS 208

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (157), Expect = 2e-12
 Identities = 42/266 (15%), Positives = 82/266 (30%), Gaps = 77/266 (28%)

Query: 16  VVYEV-----DSVVALKIIK---NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF 67
              ++       ++  K +      E  ++    E+N L+++  K PN     V+  D  
Sbjct: 19  RCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL--KHPN----IVRYYDRI 72

Query: 68  --DYHGHMCIAFEIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLD 122
               +  + I  E   G  +   + +          + V  +  QL  A +        D
Sbjct: 73  IDRTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALK--ECHRRSD 130

Query: 123 QVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRA 179
               + ++ +        K   V    + +++L DFG A     D       V T +Y +
Sbjct: 131 GGHTVLHRDL--------KPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMS 182

Query: 180 PERYM------ASD-------------------DEEHRQLF------------------- 195
           PE+         SD                       ++L                    
Sbjct: 183 PEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDEL 242

Query: 196 -DLISKMLEYEPSERISLSEALRHPF 220
            ++I++ML  +   R S+ E L +P 
Sbjct: 243 NEIITRMLNLKDYHRPSVEEILENPL 268

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (133), Expect = 2e-09
 Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)

Query: 253 RCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL 309
           + +++L DFG A     D       V T +Y +PE +  + + +  D+WS+GC+++EL  
Sbjct: 150 KQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCA 209

Query: 310 G 310
            
Sbjct: 210 L 210

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 1e-11
 Identities = 48/274 (17%), Positives = 90/274 (32%), Gaps = 82/274 (29%)

Query: 16  VVYEV-----DSVVALKIIK-------NVEKYREAARLEINALQKIGEKDPNGRHLCVKM 63
           VV +          A K IK            RE    E++ L++I  + PN     + +
Sbjct: 25  VVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI--QHPN----VITL 78

Query: 64  LDWFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLD 122
            + ++    + +  E++ G  +FDFL E      + ++      Q++      +      
Sbjct: 79  HEVYENKTDVILILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNGVYYLHSLQIAH 136

Query: 123 QVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHST--IVSTRHYRAP 180
               +  + I  +D N  K R         I++IDFG A   D  +    I  T  + AP
Sbjct: 137 --FDLKPENIMLLDRNVPKPR---------IKIIDFGLAHKIDFGNEFKNIFGTPEFVAP 185

Query: 181 E--------------------------RYMASDDEEHRQLF------------------- 195
           E                                D +   L                    
Sbjct: 186 EIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYFSNTSA 245

Query: 196 ---DLISKMLEYEPSERISLSEALRHPFFDKLPS 226
              D I ++L  +P +R+++ ++L+HP+     +
Sbjct: 246 LAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDT 279

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 6e-08
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 2/67 (2%)

Query: 246 LVMRRVRRCDIRLIDFGSATFDDEHHST--IVSTRHYRAPEVILELGWAQPCDVWSIGCI 303
           L+ R V +  I++IDFG A   D  +    I  T  + APE++         D+WSIG I
Sbjct: 146 LLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVI 205

Query: 304 IFELYLG 310
            + L  G
Sbjct: 206 TYILLSG 212

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 2e-11
 Identities = 40/178 (22%), Positives = 67/178 (37%), Gaps = 31/178 (17%)

Query: 16  VVYEV-----DSVVALKIIK--NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD 68
           VV++V       V+A K+I        R     E+  L +     P      V     F 
Sbjct: 21  VVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC--NSPY----IVGFYGAFY 74

Query: 69  YHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHM 127
             G + I  E + G S+   LK+   +P     +  +S  +I      YL          
Sbjct: 75  SDGEISICMEHMDGGSLDQVLKKAGRIP--EQILGKVSIAVIKGLT--YL--------RE 122

Query: 128 SYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSAT-FDDEHHSTIVSTRHYRAPERYM 184
            +++++     + K   +    R +I+L DFG +    D   ++ V TR Y +PER  
Sbjct: 123 KHKIMHR----DVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQ 176

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 252 RRCDIRLIDFGSAT-FDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            R +I+L DFG +    D   ++ V TR Y +PE +    ++   D+WS+G  + E+ +G
Sbjct: 140 SRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVG 199

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 1e-06
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 12/120 (10%)

Query: 106 YQLIYAKENNYLPYSLDQVRHMSYQLIYAV--DYNNKKKREVRRVRRCDIRLIDFGSATF 163
            ++   +     P      + +       V  D      R     R      +D      
Sbjct: 194 VEMAVGR----YPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMA 249

Query: 164 DDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK 223
             E    IV+    + P    + +        D ++K L   P+ER  L + + H F  +
Sbjct: 250 IFELLDYIVNEPPPKLPSGVFSLE------FQDFVNKCLIKNPAERADLKQLMVHAFIKR 303

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 4e-11
 Identities = 44/282 (15%), Positives = 84/282 (29%), Gaps = 79/282 (28%)

Query: 16  VVYEV-----DSVVALKIIK------NVEKYREAARLEINALQKIGEKDPNGRHLCVKML 64
            VY+      + +VA+K IK        +     A  EI  LQ++    PN     + +L
Sbjct: 13  TVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQEL--SHPN----IIGLL 66

Query: 65  DWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA------------- 111
           D F +  ++ + F+ +   +   +K+N+    +   ++      +               
Sbjct: 67  DAFGHKSNISLVFDFMETDLEVIIKDNSL-VLTPSHIKAYMLMTLQGLEYLHQHWILHRD 125

Query: 112 -KENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR----------------RCDI- 153
            K NN L      ++   + L  +    N+        R                  D+ 
Sbjct: 126 LKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMW 185

Query: 154 -------------------------RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDD 188
                                      I     T  +E    + S   Y   + +     
Sbjct: 186 AVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPL 245

Query: 189 EEH-----RQLFDLISKMLEYEPSERISLSEALRHPFFDKLP 225
                     L DLI  +  + P  RI+ ++AL+  +F   P
Sbjct: 246 HHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRP 287

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 33/154 (21%), Positives = 53/154 (34%), Gaps = 24/154 (15%)

Query: 167 HHSTIVSTRHYRAPER--YMASDDEEHRQLFDLISKMLEYEPSER----ISLSEALRHPF 220
            H  I+        +    +  D  E      +    L   PS      +   + L +  
Sbjct: 58  SHPNIIGLLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEY-- 115

Query: 221 FDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHST---IVST 277
                    +H      R L   + L+        ++L DFG A      +      V T
Sbjct: 116 ---------LHQHWILHRDLKPNNLLLDEN---GVLKLADFGLAKSFGSPNRAYTHQVVT 163

Query: 278 RHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLG 310
           R YRAPE++     +    D+W++GCI+ EL L 
Sbjct: 164 RWYRAPELLFGARMYGVGVDMWAVGCILAELLLR 197

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (141), Expect = 2e-10
 Identities = 36/274 (13%), Positives = 74/274 (27%), Gaps = 88/274 (32%)

Query: 16  VVYEV-----DSVVALKIIK----NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDW 66
            V            A+KI++      E        E + + ++    P      VK+   
Sbjct: 23  TVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRL--DHPF----FVKLYFT 76

Query: 67  FDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVR 125
           F     +           +  ++++           R  + +++ A            + 
Sbjct: 77  FQDDEKLYFGLSYAKNGELLKYIRKIGSFD--ETCTRFYTAEIVSA------------LE 122

Query: 126 HMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHH-----STIVSTRHYRAP 180
           ++  + I   D    K   +       I++ DFG+A            ++ V T  Y +P
Sbjct: 123 YLHGKGIIHRDL---KPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSP 179

Query: 181 ERYMAS--------------------------DDEEHRQLF------------------D 196
           E                                  E+                      D
Sbjct: 180 ELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEKFFPKARD 239

Query: 197 LISKMLEYEPSERISLSEA------LRHPFFDKL 224
           L+ K+L  + ++R+   E         HPFF+ +
Sbjct: 240 LVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESV 273

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (119), Expect = 1e-07
 Identities = 38/220 (17%), Positives = 79/220 (35%), Gaps = 24/220 (10%)

Query: 124 VRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHY--RAPE 181
            R ++    YA+    K   +   ++   +  +           H   V          +
Sbjct: 27  ARELATSREYAI----KILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEK 82

Query: 182 RYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS 241
            Y      ++ +L   I K+  ++ +         R    + + +   +H +    R L 
Sbjct: 83  LYFGLSYAKNGELLKYIRKIGSFDETC-------TRFYTAEIVSALEYLHGKGIIHRDLK 135

Query: 242 SVSSLVMRRVRRCDIRLIDFGSATFDDEHH-----STIVSTRHYRAPEVILELGWAQPCD 296
             + L+        I++ DFG+A            ++ V T  Y +PE++ E    +  D
Sbjct: 136 PENILLNED---MHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSD 192

Query: 297 VWSIGCIIFELYLGITLMARKTKTKYFY---HGKLDWDEK 333
           +W++GCII++L  G+       +   F      + D+ EK
Sbjct: 193 LWALGCIIYQLVAGLPPFRAGNEYLIFQKIIKLEYDFPEK 232

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 4e-10
 Identities = 38/279 (13%), Positives = 76/279 (27%), Gaps = 72/279 (25%)

Query: 16  VVYEV-----DSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF 67
            V           VA+K +        + +    E+  L+ +  ++  G           
Sbjct: 33  SVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSL 92

Query: 68  DYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA--------------KE 113
           +    + +   ++G  + + +K           V+ + YQ++                K 
Sbjct: 93  EEFNDVYLVTHLMGADLNNIVKCQKLTDD---HVQFLIYQILRGLKYIHSADIIHRDLKP 149

Query: 114 NNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR-------------RCDI------- 153
           +N       +++ + + L    D         R  R               DI       
Sbjct: 150 SNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIM 209

Query: 154 -------------------RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQL 194
                              +LI     T   E    I S       +            +
Sbjct: 210 AELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNFANV 269

Query: 195 F--------DLISKMLEYEPSERISLSEALRHPFFDKLP 225
           F        DL+ KML  +  +RI+ ++AL H +F +  
Sbjct: 270 FIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYH 308

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 4e-05
 Identities = 40/189 (21%), Positives = 74/189 (39%), Gaps = 10/189 (5%)

Query: 123 QVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPER 182
                   L  AV   ++  + +   +R   R +           H  ++       P R
Sbjct: 36  AAFDTKTGLRVAVKKLSRPFQSIIHAKRT-YRELRLLKHM----KHENVIGLLDVFTPAR 90

Query: 183 YMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSS 242
            +  +  +   +  L+   L      +    + ++   +  L     +H+     R L  
Sbjct: 91  SL-EEFNDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKP 149

Query: 243 VSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWA-QPCDVWSIG 301
            +  V      C+++++DFG A   D+  +  V+TR YRAPE++L      Q  D+WS+G
Sbjct: 150 SNLAVNED---CELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVG 206

Query: 302 CIIFELYLG 310
           CI+ EL  G
Sbjct: 207 CIMAELLTG 215

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 4e-10
 Identities = 37/254 (14%), Positives = 69/254 (27%), Gaps = 73/254 (28%)

Query: 16  VVYEV---DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF-DYHG 71
            V       + VA+K IKN +   +A   E + + ++  +  N     V++L    +  G
Sbjct: 22  DVMLGDYRGNKVAVKCIKN-DATAQAFLAEASVMTQL--RHSN----LVQLLGVIVEEKG 74

Query: 72  HMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQ 130
            + I  E +   S+ D+L+         D +   S  +  A               M Y 
Sbjct: 75  GLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA---------------MEYL 119

Query: 131 LIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYM------ 184
                 + +   R V        ++ DFG          T      + APE         
Sbjct: 120 EGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFST 179

Query: 185 ASD----------------------------------------DEEHRQLFDLISKMLEY 204
            SD                                        D     +++++      
Sbjct: 180 KSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGYKMDAPDGCPPAVYEVMKNCWHL 239

Query: 205 EPSERISLSEALRH 218
           + + R S  +    
Sbjct: 240 DAAMRPSFLQLREQ 253

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 13/145 (8%)

Query: 167 HHSTIVSTRHYRAPER---YMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK 223
            HS +V        E+   Y+ ++      L D +          R  L       F   
Sbjct: 58  RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRS------RGRSVLGGDCLLKFSLD 111

Query: 224 LPSSVR-VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRA 282
           +  ++  +       R L++ + LV         ++ DFG          T      + A
Sbjct: 112 VCEAMEYLEGNNFVHRDLAARNVLVSED---NVAKVSDFGLTKEASSTQDTGKLPVKWTA 168

Query: 283 PEVILELGWAQPCDVWSIGCIIFEL 307
           PE + E  ++   DVWS G +++E+
Sbjct: 169 PEALREKKFSTKSDVWSFGILLWEI 193

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.7 bits (131), Expect = 3e-09
 Identities = 38/262 (14%), Positives = 82/262 (31%), Gaps = 81/262 (30%)

Query: 19  EVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI 75
           +V   VA+KI+KN       ++    E N +Q++   +P      V+M+   +    M +
Sbjct: 32  KVVKTVAVKILKNEANDPALKDELLAEANVMQQL--DNPY----IVRMIGICEAESWMLV 85

Query: 76  AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAV 135
                   +  +L++N ++      +  + +Q+                  M Y      
Sbjct: 86  MEMAELGPLNKYLQQNRHVK--DKNIIELVHQVSMG---------------MKYLEESNF 128

Query: 136 DYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMA---------- 185
            + +   R V  V +   ++ DFG +       +   +  H + P ++ A          
Sbjct: 129 VHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFS 188

Query: 186 --SD----------------------------------------DEEHRQLFDLISKMLE 203
             SD                                            R+++DL++    
Sbjct: 189 SKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWT 248

Query: 204 YEPSERISLSE---ALRHPFFD 222
           Y+   R   +     LR+ ++D
Sbjct: 249 YDVENRPGFAAVELRLRNYYYD 270

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 25/152 (16%)

Query: 167 HHSTIVSTRHY-RAPERYMASDDEEHRQLFDLISKMLEYEPSERIS----LSEALRHPFF 221
            +  IV       A    +  +  E   L   + +    +    I     +S  +++   
Sbjct: 66  DNPYIVRMIGICEAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKY--- 122

Query: 222 DKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHS------TIV 275
                   +       R L++ + L+   V +   ++ DFG +       +         
Sbjct: 123 --------LEESNFVHRDLAARNVLL---VTQHYAKISDFGLSKALRADENYYKAQTHGK 171

Query: 276 STRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
               + APE I    ++   DVWS G +++E 
Sbjct: 172 WPVKWYAPECINYYKFSSKSDVWSFGVLMWEA 203

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (128), Expect = 1e-08
 Identities = 33/259 (12%), Positives = 77/259 (29%), Gaps = 70/259 (27%)

Query: 23  VVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
            VA+K++K       REA   E+  + ++G    N     V +L      G + + FE  
Sbjct: 69  QVAVKMLKEKADSSEREALMSELKMMTQLG-SHEN----IVNLLGACTLSGPIYLIFEYC 123

Query: 81  -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY-- 137
               + ++L+      +S D++ + + + +  +E+     + + +   +YQ+   +++  
Sbjct: 124 CYGDLLNYLRSKRE-KFSEDEIEYENQKRLEEEEDLN-VLTFEDLLCFAYQVAKGMEFLE 181

Query: 138 ------NNKKKREVRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERY--- 183
                  +   R V       +++ DFG A                    + APE     
Sbjct: 182 FKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEG 241

Query: 184 --------------------------------------------MASDDEEHRQLFDLIS 199
                                                       M        +++ ++ 
Sbjct: 242 IYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYIIMQ 301

Query: 200 KMLEYEPSERISLSEALRH 218
               ++  +R S       
Sbjct: 302 SCWAFDSRKRPSFPNLTSF 320

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 7e-05
 Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 20/161 (12%)

Query: 167 HHSTIVSTRHY--RAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL 224
            H  IV+       +   Y+  +   +  L + +    E    + I      R    + L
Sbjct: 99  SHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDL 158

Query: 225 PSSVRVHAQTQADRILSSVSSLVMRRVRRCDI-------------RLIDFGSATFDDEH- 270
                      A ++   +  L  +     D+             ++ DFG A       
Sbjct: 159 NVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDS 218

Query: 271 ----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
                        + APE + E  +    DVWS G +++E+
Sbjct: 219 NYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEI 259

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-08
 Identities = 42/265 (15%), Positives = 78/265 (29%), Gaps = 63/265 (23%)

Query: 23  VVALKIIK---NVEKYREAARLEINALQKIGEKD-PNGRHL-CVKMLDWFDYHGHMCIAF 77
            VALK ++     E    +   E+  L+ +   + PN   L  V  +   D    + + F
Sbjct: 35  FVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVF 94

Query: 78  EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA--------------KENNYLPYSLDQ 123
           E +   +  +L +        + ++ M +QL+                K  N L  S  Q
Sbjct: 95  EHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQ 154

Query: 124 VRHMSYQLIYAVDYNNKKKREVRRVR--------------RCDIRLIDF-------GSAT 162
           ++   + L     +       V  +                 D+  +             
Sbjct: 155 IKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPL 214

Query: 163 FDDEHHSTIV-----------------------STRHYRAPERYMASDDEEHRQLFDLIS 199
           F        +                          H ++ +       +      DL+ 
Sbjct: 215 FRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLL 274

Query: 200 KMLEYEPSERISLSEALRHPFFDKL 224
           K L + P++RIS   AL HP+F  L
Sbjct: 275 KCLTFNPAKRISAYSALSHPYFQDL 299

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 253 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +  +               +++V T  YRAPEV+L+  +A P D+WS+GCI  E++  
Sbjct: 154 QIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRR 211

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.8 bits (126), Expect = 2e-08
 Identities = 35/267 (13%), Positives = 76/267 (28%), Gaps = 80/267 (29%)

Query: 16  VVYEV-----DSVVALKIIK----NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDW 66
            V+ +         A+K++K       K  E    E   L  +    P      ++M   
Sbjct: 19  RVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIV--THPF----IIRMWGT 72

Query: 67  FDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRH 126
           F     + +  + +       L   +   +     +  + ++                  
Sbjct: 73  FQDAQQIFMIMDYIEGGELFSLLRKSQ-RFPNPVAKFYAAEVC---------------LA 116

Query: 127 MSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS 186
           + Y     + Y + K   +   +   I++ DFG A +  +   T+  T  Y APE     
Sbjct: 117 LEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTK 176

Query: 187 -------------------------DDEEHRQLF-------------------DLISKML 202
                                     D    + +                   DL+S+++
Sbjct: 177 PYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLI 236

Query: 203 EYEPSERI-----SLSEALRHPFFDKL 224
             + S+R+        +   HP+F ++
Sbjct: 237 TRDLSQRLGNLQNGTEDVKNHPWFKEV 263

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.4 bits (112), Expect = 9e-07
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 252 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +   I++ DFG A +  +   T+  T  Y APEV+    + +  D WS G +I+E+  G
Sbjct: 139 KNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAG 197

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 38/264 (14%), Positives = 68/264 (25%), Gaps = 73/264 (27%)

Query: 16  VVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI 75
             +   + VA+K +K      EA   E   ++K+  +        V++           +
Sbjct: 36  GTWNGTTRVAIKTLKPGTMSPEAFLQEAQVMKKL--RHEK----LVQLYAVVSEEPIYIV 89

Query: 76  AFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAV 135
              +   S+ DFLK        L Q+  M+ Q+                  M+Y      
Sbjct: 90  TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIAS---------------GMAYVERMNY 134

Query: 136 DYNNKKKREVRRVRRCDIRLIDFGSATF----DDEHHSTIVSTRHYRAPERYM------A 185
            + + +   +        ++ DFG A      +            + APE  +       
Sbjct: 135 VHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIK 194

Query: 186 SD----------------------------------------DEEHRQLFDLISKMLEYE 205
           SD                                         E    L DL+ +    E
Sbjct: 195 SDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKE 254

Query: 206 PSERISLSEALR--HPFFDKLPSS 227
           P ER +          +F      
Sbjct: 255 PEERPTFEYLQAFLEDYFTSTEPQ 278

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 252 RRCDIRLIDFGSATF----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
                ++ DFG A      +            + APE  L   +    DVWS G ++ EL
Sbjct: 148 ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTEL 207

Query: 308 YLG 310
              
Sbjct: 208 TTK 210

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 2e-08
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 164 DDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF-- 221
           + E +  +   +  +   +             DLI K+L  +P++RI   +AL H FF  
Sbjct: 251 NYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWS 310

Query: 222 DKLPSSVR 229
           D +PS ++
Sbjct: 311 DPMPSDLK 318

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 7e-06
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 252 RRCDIRLIDFGSATF-------DDEHHSTIVSTRHYRAPEVIL-ELGWAQPCDVWSIGCI 303
           R   ++L DFG A             ++  V T  YR PE++L E  +  P D+W  GCI
Sbjct: 152 RDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCI 211

Query: 304 IFELYLGITLMARKTKTKYFY 324
           + E++    +M   T+     
Sbjct: 212 MAEMWTRSPIMQGNTEQHQLA 232

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 3e-08
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHR------QLFDLISKMLEYEP 206
           ++ I     T  +E   ++     Y+    Y A+    +          DL+  +L+  P
Sbjct: 212 LKRIFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNP 271

Query: 207 SERISLSEALRHPFFDKLP 225
            +RIS  EAL+HP+F    
Sbjct: 272 VQRISAEEALQHPYFSDFC 290

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 8e-04
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 17/97 (17%)

Query: 231 HAQTQADRILSSVSSLVMRRVRRCDI-------------RLIDFGSATF---DDEHHSTI 274
             ++   ++L  +     R V   D+             +L +FG A         +S  
Sbjct: 102 IVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAE 161

Query: 275 VSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLG 310
           V T  YR P+V+      +   D+WS GCI  EL   
Sbjct: 162 VVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANA 198

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 9e-08
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFFDKLP 225
           +   L S++LEY P+ R++  EA  H FFD+L 
Sbjct: 278 EAIALCSRLLEYTPTARLTPLEACAHSFFDELR 310

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 4e-07
 Identities = 39/189 (20%), Positives = 73/189 (38%), Gaps = 40/189 (21%)

Query: 16  VVYEV-----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH 70
           VVY+        +VA+K +   ++++     E+  ++K+     N     V++  +F   
Sbjct: 35  VVYQAKLCDSGELVAIKKVLQDKRFKNR---ELQIMRKL--DHCN----IVRLRYFFYSS 85

Query: 71  GHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQ 130
           G                 K+  YL   LD V    Y++            +  V+   YQ
Sbjct: 86  GE---------------KKDEVYLNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQ 130

Query: 131 LIYAVDYNNKKKREVRRVRRCDI---------RLIDFGSATF--DDEHHSTIVSTRHYRA 179
           L  ++ Y +      R ++  ++         +L DFGSA      E + + + +R+YRA
Sbjct: 131 LFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRA 190

Query: 180 PERYMASDD 188
           PE    + D
Sbjct: 191 PELIFGATD 199

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 6e-07
 Identities = 40/214 (18%), Positives = 82/214 (38%), Gaps = 30/214 (14%)

Query: 123 QVRHMSYQLIYAV----DYNNKKKREVRRVRRCD----IRLIDFGSATFDDEHHSTIVST 174
           Q +      + A+         K RE++ +R+ D    +RL  F  ++ + +    +   
Sbjct: 38  QAKLCDSGELVAIKKVLQDKRFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNLV 97

Query: 175 RHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR-VHAQ 233
             Y                + + + ++  +    + +L       +  +L  S+  +H+ 
Sbjct: 98  LDY----------------VPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 141

Query: 234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVIL-ELG 290
               R +      ++       ++L DFGSA      E + + + +R+YRAPE+I     
Sbjct: 142 GICHRDIKP--QNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATD 199

Query: 291 WAQPCDVWSIGCIIFELYLGITLMARKTKTKYFY 324
           +    DVWS GC++ EL LG  +    +      
Sbjct: 200 YTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLV 233

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 12/92 (13%)

Query: 231 HAQTQADRILSSVSSLVMRRVRRCD--IRLIDFGSATFDDE----------HHSTIVSTR 278
           H ++   R +   + L+ R   +    I ++DFG   F  +              +  T 
Sbjct: 118 HEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTA 177

Query: 279 HYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            Y +    L    ++  D+ ++G +      G
Sbjct: 178 RYMSINTHLGREQSRRDDLEALGHVFMYFLRG 209

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.3 bits (96), Expect = 8e-05
 Identities = 26/184 (14%), Positives = 54/184 (29%), Gaps = 32/184 (17%)

Query: 16  VVYEV-----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH 70
           V++E      +  VA+K            R E    + +      G      +  +    
Sbjct: 20  VIFEGTNLLNNQQVAIKFEPR-RSDAPQLRDEYRTYKLL-----AGCTGIPNVYYFGQEG 73

Query: 71  GHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQ 130
            H  +  ++LG S+ D L       +S+  V   + Q++   +   +       R +   
Sbjct: 74  LHNVLVIDLLGPSLEDLLDLCGR-KFSVKTVAMAAKQMLARVQ--SIHEKSLVYRDIKP- 129

Query: 131 LIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHYRAP 180
                  +N             I ++DFG   F  +              +  T  Y + 
Sbjct: 130 -------DNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSI 182

Query: 181 ERYM 184
             ++
Sbjct: 183 NTHL 186

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 2e-07
 Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 32/180 (17%)

Query: 16  VVYEV-----DSVVALKIIK---NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWF 67
           VVY+        VVALK I+     E     A  EI+ L+++    PN     VK+LD  
Sbjct: 17  VVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKEL--NHPN----IVKLLDVI 70

Query: 68  DYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHM 127
                + + FE L   +  F+  +      L  ++   +Q                ++ +
Sbjct: 71  HTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQ---------------LLQGL 115

Query: 128 SYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPERYM 184
           ++   + V + + K + +       I+L DFG A         ++  V T  YRAPE  +
Sbjct: 116 AFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILL 175

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 5e-07
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFFDKLP 225
               L+S+ML Y+P++RIS   AL HPFF  + 
Sbjct: 258 DGRSLLSQMLHYDPNKRISAKAALAHPFFQDVT 290

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 35/202 (17%), Positives = 70/202 (34%), Gaps = 36/202 (17%)

Query: 123 QVRHMSYQLIYAV----------DYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIV 172
           + R+     + A+             +   RE+  ++  +   I         E+   +V
Sbjct: 20  KARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLV 79

Query: 173 STRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA 232
               ++  +++M +       L  + S + +          + L         S   +H 
Sbjct: 80  FEFLHQDLKKFMDASALTGIPLPLIKSYLFQL--------LQGLAF-----CHSHRVLHR 126

Query: 233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILEL 289
             +   +L +             I+L DFG A         ++  V T  YRAPE++L  
Sbjct: 127 DLKPQNLLIN---------TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGC 177

Query: 290 G-WAQPCDVWSIGCIIFELYLG 310
             ++   D+WS+GCI  E+   
Sbjct: 178 KYYSTAVDIWSLGCIFAEMVTR 199

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (117), Expect = 2e-07
 Identities = 41/278 (14%), Positives = 81/278 (29%), Gaps = 99/278 (35%)

Query: 16  VVYEV-----DSVVALKIIKN----VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDW 66
            V  V         A+KI++      +        E   LQ    + P        +   
Sbjct: 20  KVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT--RHPF----LTALKYA 73

Query: 67  FDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRH 126
           F  H  +C   E                        + +   ++   +    ++ ++ R 
Sbjct: 74  FQTHDRLCFVME------------------------YANGGELFFHLSRERVFTEERARF 109

Query: 127 MSYQLIYAVDYNNKKKREVRRV--------RRCDIRLIDFGSATF---DDEHHSTIVSTR 175
              +++ A++Y + +    R +        +   I++ DFG       D     T   T 
Sbjct: 110 YGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTP 169

Query: 176 HYRAPERYM------ASD-------------------DEEHRQLF--------------- 195
            Y APE         A D                   +++H +LF               
Sbjct: 170 EYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLS 229

Query: 196 ----DLISKMLEYEPSERIS-----LSEALRHPFFDKL 224
                L++ +L+ +P +R+        E + H FF  +
Sbjct: 230 PEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSI 267

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 32/207 (15%), Positives = 71/207 (34%), Gaps = 21/207 (10%)

Query: 124 VRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPER- 182
           VR  +    YA+    K+    +      +        T     H  + + ++       
Sbjct: 24  VREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNT----RHPFLTALKYAFQTHDR 79

Query: 183 -YMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV-HAQTQADRIL 240
                +     +LF  +S+            +E     +  ++ S++   H++    R +
Sbjct: 80  LCFVMEYANGGELFFHLSR--------ERVFTEERARFYGAEIVSALEYLHSRDVVYRDI 131

Query: 241 SSVSSLVMRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELGWAQPCDV 297
              + ++ +      I++ DFG       D     T   T  Y APEV+ +  + +  D 
Sbjct: 132 KLENLMLDKD---GHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDW 188

Query: 298 WSIGCIIFELYLGITLMARKTKTKYFY 324
           W +G +++E+  G      +   + F 
Sbjct: 189 WGLGVVMYEMMCGRLPFYNQDHERLFE 215

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (117), Expect = 3e-07
 Identities = 40/263 (15%), Positives = 71/263 (26%), Gaps = 62/263 (23%)

Query: 16  VVYEV-----DSVVALKIIK----NVEKYREAARLEINALQKIGEKD-PNGRHLCVKMLD 65
            VY         + A+K +      +++    A  E   L  +   D P      V M  
Sbjct: 19  EVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPF----IVCMSY 74

Query: 66  WFDYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYA------------- 111
            F     +    +++ G  +   L ++    +S   +R  + ++I               
Sbjct: 75  AFHTPDKLSFILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILGLEHMHNRFVVYRD 132

Query: 112 -KENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR----------------RCD-- 152
            K  N L      VR     L  A D++ KK                          D  
Sbjct: 133 LKPANILLDEHGHVRISDLGL--ACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWF 190

Query: 153 -----IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPS 207
                +  +  G + F                       D     +L  L+  +L+ + +
Sbjct: 191 SLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSF-SPELRSLLEGLLQRDVN 249

Query: 208 ERISL-----SEALRHPFFDKLP 225
            R+        E    PFF  L 
Sbjct: 250 RRLGCLGRGAQEVKESPFFRSLD 272

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (94), Expect = 2e-04
 Identities = 37/233 (15%), Positives = 75/233 (32%), Gaps = 23/233 (9%)

Query: 123 QVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHY--RAP 180
             R      +YA+   +KK+ ++++     +      S          IV   +      
Sbjct: 22  GCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSL-VSTGDCPFIVCMSYAFHTPD 80

Query: 181 ERYMASDDEEHRQLFDLISKMLEYEPSER----ISLSEALRHPFFDKLPSSVRVHAQTQA 236
           +     D      L   +S+   +  ++       +   L H           +H +   
Sbjct: 81  KLSFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEH-----------MHNRFVV 129

Query: 237 DRILSSVSSLVMRRVRRCDIRLIDFGSAT-FDDEHHSTIVSTRHYRAPEVILE-LGWAQP 294
            R L   + L+        +R+ D G A  F  +     V T  Y APEV+ + + +   
Sbjct: 130 YRDLKPANILLDEH---GHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSS 186

Query: 295 CDVWSIGCIIFELYLGITLMARKTKTKYFYHGKLDWDEKGTAGRYVRENCKPL 347
            D +S+GC++F+L  G +   +          ++                + L
Sbjct: 187 ADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSL 239

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 4e-07
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ 233
           Q  DL+SKML  +P++RIS+ +AL+HP+ +       V A 
Sbjct: 286 QARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAP 326

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 29/144 (20%), Positives = 60/144 (41%), Gaps = 3/144 (2%)

Query: 167 HHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS 226
           +H  I+S  +   P++ +    + +  +  + + + +    +     E + +  +  L  
Sbjct: 74  NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQVI--QMELDHERMSYLLYQMLCG 131

Query: 227 SVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVI 286
              +H+     R L   + +V        +               +  V TR+YRAPEVI
Sbjct: 132 IKHLHSAGIIHRDLKPSNIVVKSDCTLKIL-DFGLARTAGTSFMMTPYVVTRYYRAPEVI 190

Query: 287 LELGWAQPCDVWSIGCIIFELYLG 310
           L +G+ +  D+WS+GCI+ E+   
Sbjct: 191 LGMGYKENVDIWSVGCIMGEMVRH 214

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 4e-07
 Identities = 38/255 (14%), Positives = 80/255 (31%), Gaps = 73/255 (28%)

Query: 23  VVALKIIKNVEKYREAARL--EINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
             A+K +K      +      E+  L K+G   PN     + +L   ++ G++ +A E  
Sbjct: 39  DAAIKRMKEYASKDDHRDFAGELEVLCKLG-HHPN----IINLLGACEHRGYLYLAIEYA 93

Query: 81  -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN 139
              ++ DFL+++  L          +        +     S  Q+ H +  +   +DY +
Sbjct: 94  PHGNLLDFLRKSRVLE---------TDPAFAIANSTASTLSSQQLLHFAADVARGMDYLS 144

Query: 140 KKKREVRRV--------RRCDIRLIDFGSATFDDEH--HSTIVSTRHYRAPERYM----- 184
           +K+   R +             ++ DFG +   + +   +       + A E        
Sbjct: 145 QKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYT 204

Query: 185 -ASD----------------------------------------DEEHRQLFDLISKMLE 203
             SD                                             +++DL+ +   
Sbjct: 205 TNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDEVYDLMRQCWR 264

Query: 204 YEPSERISLSEALRH 218
            +P ER S ++ L  
Sbjct: 265 EKPYERPSFAQILVS 279

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 4e-05
 Identities = 27/155 (17%), Positives = 53/155 (34%), Gaps = 18/155 (11%)

Query: 167 HHSTIVSTRHY--RAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL 224
           HH  I++           Y+A +   H  L D + K    E     +++ +        L
Sbjct: 69  HHPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTAST----L 124

Query: 225 PSSVRVHAQTQADRILSSVSSL-VMRR---------VRRCDIRLIDFGSATFDDEH--HS 272
            S   +H      R +  +S    + R               ++ DFG +   + +   +
Sbjct: 125 SSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKT 184

Query: 273 TIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
                  + A E +    +    DVWS G +++E+
Sbjct: 185 MGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEI 219

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 12/33 (36%), Positives = 21/33 (63%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFFDKLP 225
           +  DL+ KML + P +RI + +AL HP+ ++  
Sbjct: 270 KALDLLDKMLTFNPHKRIEVEQALAHPYLEQYY 302

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 6e-05
 Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 20/170 (11%)

Query: 167 HHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERI---SLSEALRHPFFDK 223
            H  I+           + +   E  +   L++ ++  +  + +    LS      F  +
Sbjct: 64  RHENIIGINDI------IRAPTIEQMKDVYLVTHLMGADLYKLLKTQHLSNDHICYFLYQ 117

Query: 224 LPSSVR-VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHH------STIVS 276
           +   ++ +H+     R L   + L+      CD+++ DFG A   D  H      +  V+
Sbjct: 118 ILRGLKYIHSANVLHRDLKPSNLLLNTT---CDLKICDFGLARVADPDHDHTGFLTEYVA 174

Query: 277 TRHYRAPEVIL-ELGWAQPCDVWSIGCIIFELYLGITLMARKTKTKYFYH 325
           TR YRAPE++L   G+ +  D+WS+GCI+ E+     +   K       H
Sbjct: 175 TRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNH 224

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 48.7 bits (115), Expect = 4e-07
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFF 221
           +  D + K+L Y+   R++  EA+ HP+F
Sbjct: 294 EALDFLDKLLRYDHQSRLTAREAMEHPYF 322

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 45.2 bits (106), Expect = 6e-06
 Identities = 34/201 (16%), Positives = 72/201 (35%), Gaps = 40/201 (19%)

Query: 123 QVRHMSYQLIYAV-----DYNNKKKREVRRVRRCD-----IRLIDFGSATFDDEHHSTIV 172
           +  +++      V         K KRE++ +         I L D       D    T  
Sbjct: 53  EAINITNNEKVVVKILKPVKKKKIKREIKILENLRGGPNIITLADI----VKDPVSRTP- 107

Query: 173 STRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA 232
                      +  +   +     L   + +Y+          +R   ++ L +    H+
Sbjct: 108 ----------ALVFEHVNNTDFKQLYQTLTDYD----------IRFYMYEILKALDYCHS 147

Query: 233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPEVILEL- 289
                R        VM       +RLID+G A F    + ++  V++R+++ PE++++  
Sbjct: 148 MGIMHR--DVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQ 205

Query: 290 GWAQPCDVWSIGCIIFELYLG 310
            +    D+WS+GC++  +   
Sbjct: 206 MYDYSLDMWSLGCMLASMIFR 226

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 44.4 bits (104), Expect = 9e-06
 Identities = 35/176 (19%), Positives = 68/176 (38%), Gaps = 30/176 (17%)

Query: 16  VVYEV-----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH 70
            V+E      +  V +KI+K V+K +   + EI  L+ +    PN     + + D     
Sbjct: 50  EVFEAINITNNEKVVVKILKPVKKKK--IKREIKILENLR-GGPN----IITLADIVKDP 102

Query: 71  GHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQ 130
                A     ++  DF +    L      +R   Y+++ A +  Y        R +   
Sbjct: 103 VSRTPALVFEHVNNTDFKQLYQTLT--DYDIRFYMYEILKALD--YCHSMGIMHRDVKPH 158

Query: 131 LIYAVDYNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVSTRHYRAPERYM 184
            +     + K            +RLID+G A F    + ++  V++R+++ PE  +
Sbjct: 159 NVMIDHEHRK------------LRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLV 202

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 188 DEEHRQLFDLISKMLEYEPSERISLSEALRHPFF 221
            +E +++ D +S ML+ +P +R      + HP+ 
Sbjct: 298 KDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWL 331

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.0 bits (110), Expect = 2e-06
 Identities = 41/189 (21%), Positives = 72/189 (38%), Gaps = 34/189 (17%)

Query: 16  VVYEV-----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH 70
            V+       ++ VA+KI++  + Y EAA  EI  LQ++               D    +
Sbjct: 28  TVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRV-------NDADNTKEDSMGAN 80

Query: 71  GHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQ 130
                   IL L      K  N +   +         L   K+  +    L  V+ +S Q
Sbjct: 81  H-------ILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQ 133

Query: 131 LIYAVDYNNKKKREVRR---------------VRRCDIRLIDFGSATFDDEHHSTIVSTR 175
           L+  +DY +++   +                      I++ D G+A + DEH++  + TR
Sbjct: 134 LLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTR 193

Query: 176 HYRAPERYM 184
            YR+PE  +
Sbjct: 194 EYRSPEVLL 202

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (104), Expect = 8e-06
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 254 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
             I++ D G+A + DEH++  + TR YR+PEV+L   W    D+WS  C+IFEL  G
Sbjct: 169 IQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITG 225

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 5e-07
 Identities = 33/257 (12%), Positives = 66/257 (25%), Gaps = 75/257 (29%)

Query: 16  VVYEV----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG 71
           +V+         VA+K I+      E    E   + K+    P      V++        
Sbjct: 20  LVHLGYWLNKDKVAIKTIREGAMSEEDFIEEAEVMMKL--SHPK----LVQLYGVCLEQA 73

Query: 72  HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQL 131
            +C+ FE +               ++ + +  M   +                  M+Y  
Sbjct: 74  PICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEG---------------MAYLE 118

Query: 132 IYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHST----IVSTRHYRAPERYM--- 184
              V + +   R         I++ DFG   F  +   T          + +PE +    
Sbjct: 119 EACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSR 178

Query: 185 ---ASD----------------------------------------DEEHRQLFDLISKM 201
               SD                                              ++ +++  
Sbjct: 179 YSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHC 238

Query: 202 LEYEPSERISLSEALRH 218
            +  P +R + S  LR 
Sbjct: 239 WKERPEDRPAFSRLLRQ 255

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (90), Expect = 5e-04
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 252 RRCDIRLIDFGSATFDDEHHST----IVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL 307
               I++ DFG   F  +   T          + +PEV     ++   DVWS G +++E+
Sbjct: 136 ENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEV 195

Query: 308 YLG 310
           +  
Sbjct: 196 FSE 198

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 7e-07
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS 227
              +L+ KML  +  +R++  EAL HP+F+ L  +
Sbjct: 276 LAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHDT 310

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 167 HHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS 226
            H  ++       P+  +  DD     L          +  +   L E        ++  
Sbjct: 75  RHENVIGLLDVFTPDETL--DDFTDFYLVMPFMGTDLGKLMKHEKLGEDRIQFLVYQMLK 132

Query: 227 SVR-VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEV 285
            +R +HA     R L   +  V      C+++++DFG A   D   +  V TR YRAPEV
Sbjct: 133 GLRYIHAAGIIHRDLKPGNLAVNED---CELKILDFGLARQADSEMTGYVVTRWYRAPEV 189

Query: 286 ILE-LGWAQPCDVWSIGCIIFELYLG 310
           IL  + + Q  D+WS+GCI+ E+  G
Sbjct: 190 ILNWMRYTQTVDIWSVGCIMAEMITG 215

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 8e-07
 Identities = 37/262 (14%), Positives = 79/262 (30%), Gaps = 69/262 (26%)

Query: 18  YEVDSVVALKIIK--NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI 75
           YE  ++VA+K++K       +   + E   + +    +PN     VK+L        MC+
Sbjct: 40  YEPFTMVAVKMLKEEASADMQADFQREAALMAEF--DNPN----IVKLLGVCAVGKPMCL 93

Query: 76  AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYA 134
            FE +    + +FL+  +           +S +   +      P S  +   ++ Q+   
Sbjct: 94  LFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGP-PPLSCAEQLCIARQVAAG 152

Query: 135 VDYNNKKKREVRRV--------RRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPE 181
           + Y +++K   R +            +++ DFG +                    +  PE
Sbjct: 153 MAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPE 212

Query: 182 ----------------------------------------------RYMASDDEEHRQLF 195
                                                           +A  +    +L+
Sbjct: 213 SIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELY 272

Query: 196 DLISKMLEYEPSERISLSEALR 217
           +L+       P++R S     R
Sbjct: 273 NLMRLCWSKLPADRPSFCSIHR 294

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 3e-04
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 252 RRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE 306
               +++ DFG +                    +  PE I    +    DVW+ G +++E
Sbjct: 175 ENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWE 234

Query: 307 LYLG 310
           ++  
Sbjct: 235 IFSY 238

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 13/31 (41%), Positives = 22/31 (70%)

Query: 193 QLFDLISKMLEYEPSERISLSEALRHPFFDK 223
              DL+SKML+ +P++RI+  +AL H +F +
Sbjct: 256 SGIDLLSKMLKLDPNQRITAKQALEHAYFKE 286

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 44.5 bits (104), Expect = 8e-06
 Identities = 38/181 (20%), Positives = 63/181 (34%), Gaps = 32/181 (17%)

Query: 16  VVYEV----DSVVALKII---KNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFD 68
           VVY+         ALK I   K  E        EI+ L+++  K  N     VK+ D   
Sbjct: 17  VVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKEL--KHSN----IVKLYDVIH 70

Query: 69  YHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMS 128
               + + FE L   +   L             +    QL+                 ++
Sbjct: 71  TKKRLVLVFEHLDQDLKKLLDVCEG-GLESVTAKSFLLQLLNG---------------IA 114

Query: 129 YQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPERYMA 185
           Y     V + + K + +   R  ++++ DFG A         ++  + T  YRAP+  M 
Sbjct: 115 YCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMG 174

Query: 186 S 186
           S
Sbjct: 175 S 175

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 41.8 bits (97), Expect = 6e-05
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 252 RRCDIRLIDFGSATF---DDEHHSTIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFEL 307
           R  ++++ DFG A         ++  + T  YRAP+V++    ++   D+WS+GCI  E+
Sbjct: 135 REGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEM 194

Query: 308 YLG 310
             G
Sbjct: 195 VNG 197

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 16/90 (17%), Positives = 35/90 (38%), Gaps = 10/90 (11%)

Query: 231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHY 280
           H++    R +   + L+    +   + +IDFG A    +           +  +  T  Y
Sbjct: 120 HSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARY 179

Query: 281 RAPEVILELGWAQPCDVWSIGCIIFELYLG 310
            +    L +  ++  D+ S+G ++    LG
Sbjct: 180 ASINTHLGIEQSRRDDLESLGYVLMYFNLG 209

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 32/266 (12%), Positives = 72/266 (27%), Gaps = 65/266 (24%)

Query: 16  VVYEV-----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH 70
            +Y          VA+K+   V+       +E    + +      G      +       
Sbjct: 22  DIYLGTDIAAGEEVAIKLEC-VKTKHPQLHIESKIYKMM-----QGGVGIPTIRWCGAEG 75

Query: 71  GHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLI----YAKENNYL-----PYSL 121
            +  +  E+LG S+ D     +   +SL  V  ++ Q+I    Y    N++     P + 
Sbjct: 76  DYNVMVMELLGPSLEDLFNFCSR-KFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNF 134

Query: 122 DQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID------------------------ 157
                    L+Y +D+   KK    R  +      +                        
Sbjct: 135 LMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRD 194

Query: 158 -------------FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHR----QLFDLISK 200
                         GS  +     +T        + ++     +   +    +    ++ 
Sbjct: 195 DLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNF 254

Query: 201 MLEYEPSERIS---LSEALRHPFFDK 223
                  ++     L +  R+ F  +
Sbjct: 255 CRSLRFDDKPDYSYLRQLFRNLFHRQ 280

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 1e-06
 Identities = 36/254 (14%), Positives = 75/254 (29%), Gaps = 59/254 (23%)

Query: 23  VVALKIIKNV-----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF 77
           + A+K++K        K  E  R E   L+ I           V +   F     + +  
Sbjct: 54  LYAMKVLKKATIVQKAKTTEHTRTERQVLEHI-----RQSPFLVTLHYAFQTETKLHLIL 108

Query: 78  E-ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA------------------------- 111
           + I G  +F  L +     ++  +V+    +++ A                         
Sbjct: 109 DYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNG 166

Query: 112 ---------------KENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI 156
                           E          + +M+  ++   D  + K  +   +    +  +
Sbjct: 167 HVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLG-VLMYEL 225

Query: 157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISL---- 212
             G++ F  +      +    R  +       E      DLI ++L  +P +R+      
Sbjct: 226 LTGASPFTVDGEKNSQAEISRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRD 285

Query: 213 -SEALRHPFFDKLP 225
             E   H FF K+ 
Sbjct: 286 ADEIKEHLFFQKIN 299

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 30/257 (11%), Positives = 65/257 (25%), Gaps = 75/257 (29%)

Query: 16  VVYEV----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG 71
           VV          VA+K+IK      +    E   +  +           V++        
Sbjct: 19  VVKYGKWRGQYDVAIKMIKEGSMSEDEFIEEAKVMMNL--SHEK----LVQLYGVCTKQR 72

Query: 72  HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQL 131
            + I  E +               +   Q+  M   +  A            + ++  + 
Sbjct: 73  PIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEA------------MEYLESKQ 120

Query: 132 IYAVDYNNKKKREVRRVRRCDIRLIDFGSATF--DDEHHST--IVSTRHYRAPERYM--- 184
                + +   R      +  +++ DFG + +  DDE+ S+        +  PE  M   
Sbjct: 121 FL---HRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSK 177

Query: 185 ---ASD----------------------------------------DEEHRQLFDLISKM 201
               SD                                             +++ ++   
Sbjct: 178 FSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSC 237

Query: 202 LEYEPSERISLSEALRH 218
              +  ER +    L +
Sbjct: 238 WHEKADERPTFKILLSN 254

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 22/113 (19%), Positives = 51/113 (45%), Gaps = 8/113 (7%)

Query: 201 MLEYEPSERISLSEALRHPFFDKLPSSVR-VHAQTQADRILSSVSSLVMRRVRRCDIRLI 259
           +L Y    R              +  ++  + ++    R L++ + LV  +     +++ 
Sbjct: 86  LLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQ---GVVKVS 142

Query: 260 DFGSATF--DDEHHST--IVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY 308
           DFG + +  DDE+ S+        +  PEV++   ++   D+W+ G +++E+Y
Sbjct: 143 DFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIY 195

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 34/262 (12%), Positives = 73/262 (27%), Gaps = 77/262 (29%)

Query: 16  VVYEV----DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG 71
            V+       + VA+K +K      +A   E N ++++  +        V++        
Sbjct: 28  EVWMGYYNGHTKVAVKSLKQGSMSPDAFLAEANLMKQL--QHQR----LVRLYAVVTQEP 81

Query: 72  HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQL 131
              I   +   S+ DFLK  + +  +++++  M+ Q+                  M++  
Sbjct: 82  IYIITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQI---------------AEGMAFIE 126

Query: 132 IYAVDYNNKKKREVRRVRRCDIRLIDFGSATF----DDEHHSTIVSTRHYRAPERYM--- 184
                + + +   +        ++ DFG A      +            + APE      
Sbjct: 127 ERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT 186

Query: 185 ---ASD----------------------------------------DEEHRQLFDLISKM 201
               SD                                        D    +L+ L+   
Sbjct: 187 FTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLC 246

Query: 202 LEYEPSERISLSEALR--HPFF 221
            +  P +R +          FF
Sbjct: 247 WKERPEDRPTFDYLRSVLEDFF 268

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 3e-04
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 7/84 (8%)

Query: 231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATF----DDEHHSTIVSTRHYRAPEVI 286
             +    R L + + LV         ++ DFG A      +            + APE I
Sbjct: 126 EERNYIHRDLRAANILVSDT---LSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAI 182

Query: 287 LELGWAQPCDVWSIGCIIFELYLG 310
               +    DVWS G ++ E+   
Sbjct: 183 NYGTFTIKSDVWSFGILLTEIVTH 206

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 34/267 (12%), Positives = 76/267 (28%), Gaps = 87/267 (32%)

Query: 16  VVYEV--DSVVALKIIK---NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH 70
            VY+      VA+K++       +  +A + E+  L+K        RH+ + +   +   
Sbjct: 23  TVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT-------RHVNILLFMGYSTA 75

Query: 71  GHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSY 129
             + I  +   G S++  L       + + ++  ++ Q                   M Y
Sbjct: 76  PQLAIVTQWCEGSSLYHHLHIIET-KFEMIKLIDIARQTAQG---------------MDY 119

Query: 130 QLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATF-----DDEHHSTIVSTRHYRAPERYM 184
               ++ + + K   +       +++ DFG AT             +  +  + APE   
Sbjct: 120 LHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIR 179

Query: 185 ---------ASD--------------------------------------------DEEH 191
                     SD                                                
Sbjct: 180 MQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCP 239

Query: 192 RQLFDLISKMLEYEPSERISLSEALRH 218
           + +  L+++ L+ +  ER    + L  
Sbjct: 240 KAMKRLMAECLKKKRDERPLFPQILAS 266

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (108), Expect = 3e-06
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 8/63 (12%)

Query: 256 IRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWA---QPCDVWSIGCIIFEL 307
           +++ DFG AT             +  +  + APEVI            DV++ G +++EL
Sbjct: 143 VKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYEL 202

Query: 308 YLG 310
             G
Sbjct: 203 MTG 205

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 23/191 (12%)

Query: 16  VVYEV---DSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGH 72
            V+        VA+KI  + E+       EI     +  +  N                 
Sbjct: 18  EVWRGKWRGEEVAVKIFSSREERSWFREAEIYQTVML--RHENILGFIAADNKDNGTWTQ 75

Query: 73  MCIAFE-ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQL 131
           + +  +     S+FD+L        +++ +  ++           L +   ++     + 
Sbjct: 76  LWLVSDYHEHGSLFDYLNRY---TVTVEGMIKLALSTASG-----LAHLHMEIVGTQGKP 127

Query: 132 IYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHST-------IVSTRHYRAPERYM 184
             A+ + + K + +   +     + D G A   D    T        V T+ Y APE   
Sbjct: 128 --AIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLD 185

Query: 185 ASDDEEHRQLF 195
            S + +H + F
Sbjct: 186 DSINMKHFESF 196

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 5e-06
 Identities = 34/190 (17%), Positives = 67/190 (35%), Gaps = 34/190 (17%)

Query: 167 HHSTIV------STRHYRAPERYMASDDEEHRQLFDLISKM-LEYEPSERISLSEA---- 215
            H  I+      +  +    + ++ SD  EH  LFD +++  +  E   +++LS A    
Sbjct: 55  RHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLA 114

Query: 216 -LRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHST- 273
            L              H   ++  IL           +     + D G A   D    T 
Sbjct: 115 HLHMEIVGTQGKPAIAHRDLKSKNILVK---------KNGTCCIADLGLAVRHDSATDTI 165

Query: 274 ------IVSTRHYRAPEVILELGWAQP------CDVWSIGCIIFELYLGITLMARKTKTK 321
                  V T+ Y APEV+ +    +        D++++G + +E+    ++       +
Sbjct: 166 DIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQ 225

Query: 322 YFYHGKLDWD 331
             Y+  +  D
Sbjct: 226 LPYYDLVPSD 235

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 8e-06
 Identities = 35/258 (13%), Positives = 72/258 (27%), Gaps = 75/258 (29%)

Query: 23  VVALKIIK--NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE-I 79
            VA+K++K       REA   E+  L  +G    N     V +L      G   +  E  
Sbjct: 55  TVAVKMLKPSAHLTEREALMSELKVLSYLG-NHMN----IVNLLGACTIGGPTLVITEYC 109

Query: 80  LGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDY-- 137
               + +FL+               S       E++ L   L+ +   SYQ+   + +  
Sbjct: 110 CYGDLLNFLRRKR-------DSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLA 162

Query: 138 ------NNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERY-------- 183
                  +   R +        ++ DFG A       + +V        +          
Sbjct: 163 SKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNC 222

Query: 184 --------------------------------------------MASDDEEHRQLFDLIS 199
                                                       M S +    +++D++ 
Sbjct: 223 VYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDIMK 282

Query: 200 KMLEYEPSERISLSEALR 217
              + +P +R +  + ++
Sbjct: 283 TCWDADPLKRPTFKQIVQ 300

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (104), Expect = 9e-06
 Identities = 34/231 (14%), Positives = 71/231 (30%), Gaps = 42/231 (18%)

Query: 23  VVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-G 81
            VA+K +K      E    E   +++I  K PN     V++L          I  E +  
Sbjct: 44  TVAVKTLKEDTMEVEEFLKEAAVMKEI--KHPN----LVQLLGVCTREPPFYIITEFMTY 97

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYA--------------KENNYLPYSLDQVR-- 125
            ++ D+L+E N    S   + +M+ Q+  A                 N L      V+  
Sbjct: 98  GNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVA 157

Query: 126 HMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVS------------ 173
                 +   D           ++      + +   +   +  +  V             
Sbjct: 158 DFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPY 217

Query: 174 -------TRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALR 217
                         +  M   +    ++++L+    ++ PS+R S +E  +
Sbjct: 218 PGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ 268

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (90), Expect = 6e-04
 Identities = 32/193 (16%), Positives = 67/193 (34%), Gaps = 22/193 (11%)

Query: 124 VRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHY--RAPE 181
                Y L  AV    +   EV    + +  ++        +  H  +V       R P 
Sbjct: 36  GVWKKYSLTVAVKTLKEDTMEVEEFLK-EAAVMK-------EIKHPNLVQLLGVCTREPP 87

Query: 182 RYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS 241
            Y+ ++   +  L D + +    E S  +     L +       +   +  +    R L+
Sbjct: 88  FYIITEFMTYGNLLDYLRECNRQEVSAVV-----LLYMATQISSAMEYLEKKNFIHRDLA 142

Query: 242 SVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELGWAQPCDV 297
           + + LV        +++ DFG +          H+       + APE +    ++   DV
Sbjct: 143 ARNCLVGEN---HLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDV 199

Query: 298 WSIGCIIFELYLG 310
           W+ G +++E+   
Sbjct: 200 WAFGVLLWEIATY 212

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 33/259 (12%), Positives = 75/259 (28%), Gaps = 58/259 (22%)

Query: 23  VVALKIIK--NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
            VA+K++K    +   E    E   + ++   +P      V+++        + +  E+ 
Sbjct: 38  DVAIKVLKQGTEKADTEEMMREAQIMHQL--DNPY----IVRLIGVCQAE-ALMLVMEMA 90

Query: 81  -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYA--------------KENNYLPYSLDQVR 125
            G  +  FL         +  V  + +Q+                    N L  +    +
Sbjct: 91  GGGPLHKFLVGKRE-EIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAK 149

Query: 126 HMSYQLIYAVDYNNKKKREVRRVR------------------RCDI--------RLIDFG 159
              + L  A+  ++         +                  R D+          + +G
Sbjct: 150 ISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYG 209

Query: 160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSE---AL 216
              +       ++    +    + M    E   +L+ L+S    Y+  +R         +
Sbjct: 210 QKPYKKMKGPEVM---AFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRM 266

Query: 217 RHPFFDKLPSSVRVHAQTQ 235
           R  ++  L S V  H    
Sbjct: 267 RACYYS-LASKVEGHHHHH 284

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.6 bits (102), Expect = 1e-05
 Identities = 33/258 (12%), Positives = 68/258 (26%), Gaps = 61/258 (23%)

Query: 16  VVYEV-----DSVVALKIIK----NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDW 66
            V+          VA+K+++        +    R E      +    P      V + D 
Sbjct: 22  EVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAAL--NHPA----IVAVYDT 75

Query: 67  F----DYHGHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYA---------- 111
                       I  E + G+++ D +      P +  +   +      A          
Sbjct: 76  GEAETPAGPLPYIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQALNFSHQNGII 133

Query: 112 ----KENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV------------------R 149
               K  N +  + + V+ M + +  A+  +     +   V                   
Sbjct: 134 HRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDA 193

Query: 150 RCDIRL-------IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKML 202
           R D+         +  G   F  +   ++        P    A  +     L  ++ K L
Sbjct: 194 RSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKAL 253

Query: 203 EYEPSERISLSEALRHPF 220
              P  R   +  +R   
Sbjct: 254 AKNPENRYQTAAEMRADL 271

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 35/180 (19%)

Query: 142 KREVRRVRRCD----IRLIDFGSATFDDEHHSTIV-------STRHYRAPERYMASDDEE 190
           +RE +     +    + + D G A         IV       + R     E  M    + 
Sbjct: 55  RREAQNAAALNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPM--TPKR 112

Query: 191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRR 250
             ++     + L +     I           D  P+++ + A      +           
Sbjct: 113 AIEVIADACQALNFSHQNGI--------IHRDVKPANIMISATNAVKVM----------- 153

Query: 251 VRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
                        +       + ++ T  Y +PE           DV+S+GC+++E+  G
Sbjct: 154 ---DFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTG 210

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 33/252 (13%), Positives = 66/252 (26%), Gaps = 77/252 (30%)

Query: 23  VVALKIIKN--VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
            VA+K +K+   EK R     E + + +     PN     + +         + I  E +
Sbjct: 56  FVAIKTLKSGYTEKQRRDFLSEASIMGQF--DHPN----VIHLEGVVTKSTPVMIITEFM 109

Query: 81  GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK 140
                D     N   +++ Q+  M   +                  M Y       + + 
Sbjct: 110 ENGSLDSFLRQNDGQFTVIQLVGMLRGIAAG---------------MKYLADMNYVHRDL 154

Query: 141 KKREVRRVRRCDIRLIDFGSATF--DDEHHSTIVS------TRHYRAP-----ERYMASD 187
             R +        ++ DFG + F  DD    T  S         + AP      ++ ++ 
Sbjct: 155 AARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSAS 214

Query: 188 D-----------------------------------------EEHRQLFDLISKMLEYEP 206
           D                                         +    L  L+    + + 
Sbjct: 215 DVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKDR 274

Query: 207 SERISLSEALRH 218
           + R    + +  
Sbjct: 275 NHRPKFGQIVNT 286

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (99), Expect = 4e-05
 Identities = 39/238 (16%), Positives = 71/238 (29%), Gaps = 54/238 (22%)

Query: 23  VVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
            VA+K  KN   +  RE    E   +++     P+     VK++        + I  E+ 
Sbjct: 37  AVAIKTCKNCTSDSVREKFLQEALTMRQF--DHPH----IVKLIGVIT-ENPVWIIMELC 89

Query: 81  GLSVFDFLKENNYLPYSLDQVRHMSYQLIYA--------------KENNYLPYSLDQVRH 126
            L       +       L  +   +YQL  A                 N L  S D V+ 
Sbjct: 90  TLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKL 149

Query: 127 MSYQLIYAVDYNNKKKREVRRV----------------RRCDIR--------LIDFGSAT 162
             + L   ++ +   K    ++                   D+         ++  G   
Sbjct: 150 GDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKP 209

Query: 163 FDDEHHSTIVS--TRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRH 218
           F    ++ ++       R P             L+ L++K   Y+PS R   +E    
Sbjct: 210 FQGVKNNDVIGRIENGERLPMPPNCPPT-----LYSLMTKCWAYDPSRRPRFTELKAQ 262

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 28/281 (9%), Positives = 65/281 (23%), Gaps = 77/281 (27%)

Query: 19  EVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA 76
           +V   VA+K ++     K  +    E   +  +        +  V  L        + + 
Sbjct: 36  KVKIPVAIKELREATSPKANKEILDEAYVMASV-------DNPHVCRLLGICLTSTVQLI 88

Query: 77  FEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD 136
            +++           +        + +   Q+                  M+Y     + 
Sbjct: 89  TQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKG---------------MNYLEDRRLV 133

Query: 137 YNNKKKREVRRVRRCDIRLIDFGSATF-----DDEHHSTIVSTRHYRAPE---------- 181
           + +   R V       +++ DFG A        + H         + A E          
Sbjct: 134 HRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQ 193

Query: 182 ------------------------------------RYMASDDEEHRQLFDLISKMLEYE 205
                                                 +         ++ ++ K    +
Sbjct: 194 SDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMID 253

Query: 206 PSERISLSEALRHPFFDKLPSSVRVHAQTQADRILSSVSSL 246
              R    E +    F K+    + +   Q D  +   S  
Sbjct: 254 ADSRPKFRELIIE--FSKMARDPQRYLVIQGDERMHLPSPT 292

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 0.001
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 252 RRCDIRLIDFGSATF-----DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE 306
               +++ DFG A        + H         + A E IL   +    DVWS G  ++E
Sbjct: 146 TPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWE 205

Query: 307 L 307
           L
Sbjct: 206 L 206

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 252 RRCDIRLIDFGSATF-------DDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCII 304
            +  +++ DFG A            + +       + A E +    +    DVWS G ++
Sbjct: 165 EKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLL 224

Query: 305 FELYLG 310
           +EL   
Sbjct: 225 WELMTR 230

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 253 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG 310
           +  I++ DFG A        T+  T    APE+IL  G+ +  D W++G +I+E+  G
Sbjct: 177 QGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAG 234

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 36/264 (13%), Positives = 71/264 (26%), Gaps = 80/264 (30%)

Query: 16  VVYEV-----DSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDW 66
            V  V      +  A+KI+        K  E    E   LQ +           +  L++
Sbjct: 56  RVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAV-------NFPFLVKLEF 108

Query: 67  FDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRH 126
                               F        +S    R  + Q++                +
Sbjct: 109 SFKDNSNLYMVMEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLT------------FEY 156

Query: 127 MSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYM-- 184
           +    +   D    K   +   ++  I++ DFG A        T+  T    APE  +  
Sbjct: 157 LHSLDLIYRDL---KPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSK 213

Query: 185 ----ASD-------------------DEEHRQLF-------------------DLISKML 202
               A D                    ++  Q++                   DL+  +L
Sbjct: 214 GYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLL 273

Query: 203 EYEPSERI-----SLSEALRHPFF 221
           + + ++R       +++   H +F
Sbjct: 274 QVDLTKRFGNLKNGVNDIKNHKWF 297

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 2e-04
 Identities = 39/259 (15%), Positives = 77/259 (29%), Gaps = 59/259 (22%)

Query: 19  EVDSVVALKIIKNVEKYREAARL--EINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA 76
           E ++ VA+K +      RE      E + +++         H  V++L          + 
Sbjct: 48  EPETRVAIKTVNEAASMRERIEFLNEASVMKEFN------CHHVVRLLGVVSQGQPTLVI 101

Query: 77  FEIL-GLSVFDFLKENNYL--------PYSLDQVRHMSYQLIYA--------------KE 113
            E++    +  +L+             P SL ++  M+ ++                   
Sbjct: 102 MELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAA 161

Query: 114 NNYLPYSLDQVRHMSY---QLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHS- 169
            N +      V+   +   + IY  DY  K  + +  VR      +  G  T   +  S 
Sbjct: 162 RNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSF 221

Query: 170 ------------------TIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERIS 211
                             +      +      +   D     LF+L+    +Y P  R S
Sbjct: 222 GVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELMRMCWQYNPKMRPS 281

Query: 212 LSEALR------HPFFDKL 224
             E +        P F ++
Sbjct: 282 FLEIISSIKEEMEPGFREV 300

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 19/149 (12%), Positives = 45/149 (30%), Gaps = 18/149 (12%)

Query: 167 HHSTIVSTRHY-RAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP 225
            H  ++        P   M ++      L D            +          +  ++ 
Sbjct: 69  DHRNLIRLYGVVLTPPMKMVTELAPLGSLLD-------RLRKHQGHFLLGTLSRYAVQVA 121

Query: 226 SSVRV-HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTR 278
             +    ++    R L++ + L+  R     +++ DFG      +               
Sbjct: 122 EGMGYLESKRFIHRDLAARNLLLATR---DLVKIGDFGLMRALPQNDDHYVMQEHRKVPF 178

Query: 279 HYRAPEVILELGWAQPCDVWSIGCIIFEL 307
            + APE +    ++   D W  G  ++E+
Sbjct: 179 AWCAPESLKTRTFSHASDTWMFGVTLWEM 207

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 28/238 (11%), Positives = 74/238 (31%), Gaps = 53/238 (22%)

Query: 23  VVALKIIK----NVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE 78
            VA+K +K    +  +  +    E+NA+  +     N     +++         M +  E
Sbjct: 38  SVAVKCLKPDVLSQPEAMDDFIREVNAMHSL--DHRN----LIRLYGVV-LTPPMKMVTE 90

Query: 79  ILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYA--------------KENNYLPYSLDQV 124
           +  L         +   + L  +   + Q+                    N L  + D V
Sbjct: 91  LAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLV 150

Query: 125 RHMSYQLIYAVDYNNKKKREVRRVR------------------RCDI--------RLIDF 158
           +   + L+ A+  N+         +                    D          +  +
Sbjct: 151 KIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTY 210

Query: 159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEAL 216
           G   +   + S I+  +  +  ER +   ++  + +++++ +   ++P +R +     
Sbjct: 211 GQEPWIGLNGSQILH-KIDKEGER-LPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALR 266

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 31/253 (12%), Positives = 66/253 (26%), Gaps = 75/253 (29%)

Query: 19  EVDSVVALKIIKN--VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA 76
           + +  VA+K +K    EK R     E   + +      N     +++      +  M I 
Sbjct: 34  KKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF--SHHN----IIRLEGVISKYKPMMII 87

Query: 77  FEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD 136
            E +     D         +S+ Q+  M   +                  M Y       
Sbjct: 88  TEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAG---------------MKYLANMNYV 132

Query: 137 YNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVS------TRHYRAPE------RYM 184
           + +   R +        ++ DFG +   ++      +         + APE         
Sbjct: 133 HRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTS 192

Query: 185 ASD----------------------------------------DEEHRQLFDLISKMLEY 204
           ASD                                         +    ++ L+ +  + 
Sbjct: 193 ASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQ 252

Query: 205 EPSERISLSEALR 217
           E + R   ++ + 
Sbjct: 253 ERARRPKFADIVS 265

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 6e-04
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 252 RRCDIRLIDFGSATFDDEHHSTIVS------TRHYRAPEVILELGWAQPCDVWSIGCIIF 305
                ++ DFG +   ++      +         + APE I    +    DVWS G +++
Sbjct: 145 SNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMW 204

Query: 306 ELYLG 310
           E+   
Sbjct: 205 EVMTY 209

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 35/258 (13%), Positives = 69/258 (26%), Gaps = 76/258 (29%)

Query: 23  VVALKIIKN--VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL 80
            VA+K++K+   EK       E+  ++ IG K  N     + +L      G + +  E  
Sbjct: 47  KVAVKMLKSDATEKDLSDLISEMEMMKMIG-KHKN----IINLLGACTQDGPLYVIVEYA 101

Query: 81  -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNN 139
              ++ ++L+                        N     S   +   +YQ+   ++Y  
Sbjct: 102 SKGNLREYLQARRPPGLEYS---------YNPSHNPEEQLSSKDLVSCAYQVARGMEYLA 152

Query: 140 KK-------KREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYM-------- 184
            K             V   ++  I       D  H      T + R P ++M        
Sbjct: 153 SKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDR 212

Query: 185 ----ASD----------------------------------------DEEHRQLFDLISK 200
                SD                                             +L+ ++  
Sbjct: 213 IYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLLKEGHRMDKPSNCTNELYMMMRD 272

Query: 201 MLEYEPSERISLSEALRH 218
                PS+R +  + +  
Sbjct: 273 CWHAVPSQRPTFKQLVED 290

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.003
 Identities = 33/257 (12%), Positives = 70/257 (27%), Gaps = 72/257 (28%)

Query: 23  VVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-G 81
            VA+K++K    + E   L       I        ++   +       G + +  E    
Sbjct: 45  TVAVKMLKEGATHSEHRALMSELKILIHIGHHL--NVVNLLGACTKPGGPLMVIVEFCKF 102

Query: 82  LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK 141
            ++  +L+                Y+            +L+ +   S+Q+   +++   +
Sbjct: 103 GNLSTYLRSKRNEFVPYKVAPEDLYKD---------FLTLEHLICYSFQVAKGMEFLASR 153

Query: 142 KREVRRVR--------RCDIRLIDFGSATF-----DDEHHSTIVSTRHYRAPE------- 181
           K   R +         +  +++ DFG A       D            + APE       
Sbjct: 154 KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVY 213

Query: 182 ----------------------------------------RYMASDDEEHRQLFDLISKM 201
                                                     M + D    +++  +   
Sbjct: 214 TIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTMLDC 273

Query: 202 LEYEPSERISLSEALRH 218
              EPS+R + SE + H
Sbjct: 274 WHGEPSQRPTFSELVEH 290

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	351
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.82
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.05
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.05
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	98.97
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	98.97
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	98.97
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	98.95
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	98.95
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	98.92
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	98.91
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	98.91
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	98.9
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	98.87
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	98.85
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	98.84
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	98.81
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	98.8
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	98.78
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	98.77
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	98.75
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	98.75
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	98.71
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	98.68
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	98.66
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	98.65
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	98.65
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	98.64
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	98.6
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	98.58
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	98.57
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	98.56
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	98.55
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	98.54
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	98.53
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	98.34
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	98.24
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	98.23
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	98.2
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	98.15
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	98.15
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	98.14
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	98.11
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	98.1
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	98.08
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	98.02
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	97.94
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	97.94
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	97.86
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	97.86
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	97.86
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	97.85
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	97.79
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	97.73
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	97.73
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	97.71
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	97.66
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	97.65
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	97.63
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	97.6
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	97.51
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.38
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	97.27
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	96.9
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.58
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	96.13
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	93.37
d1nw1a_	395	Choline kinase {Caenorhabditis elegans [TaxId: 623	87.63

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-45  Score=334.38  Aligned_cols=196  Identities=21%  Similarity=0.276  Sum_probs=172.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +++||+|+||+||+|+++.+|+.||||++.... ...+.+.+|+++|+.++|+|      |++++++|..++++||||||
T Consensus        25 ~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~~~~~~~~~~~~~ivmEy   98 (293)
T d1yhwa1          25 FEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPN------IVNYLDSYLVGDELWVVMEY   98 (293)
T ss_dssp             CEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEEEEC
T ss_pred             EEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCC------EeeEeEEEEECCEEEEEEEe
Confidence            478999999999999999999999999997543 34567899999999999888      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      | ||+|.+++...   ++++..++.++.|++.|                       |.|||++|++|||+||.||.+.  
T Consensus        99 ~~gg~L~~~~~~~---~l~~~~~~~i~~qi~~a-----------------------L~yLH~~~iiHrDiKp~NILl~--  150 (293)
T d1yhwa1          99 LAGGSLTDVVTET---CMDEGQIAAVCRECLQA-----------------------LEFLHSNQVIHRDIKSDNILLG--  150 (293)
T ss_dssp             CTTCBHHHHHHHS---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC--
T ss_pred             cCCCcHHHHhhcc---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCcccCCcHHHeEEC--
Confidence            9 89999988764   47888888888888888                       9999999999999999999986  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       151 --------------------------------------------------------------------------------  150 (293)
T d1yhwa1         151 --------------------------------------------------------------------------------  150 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                   ..+.+||+|||++....   ......+||+.|+|||++.+.+++.++||||+||++|+|+||..||.
T Consensus       151 -------------~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~  217 (293)
T d1yhwa1         151 -------------MDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYL  217 (293)
T ss_dssp             -------------TTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTT
T ss_pred             -------------CCCcEeeccchhheeeccccccccccccCCCccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCC
Confidence                         23579999999997632   23356789999999999999999999999999999999999999998


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+.+
T Consensus       218 ~~~~~~~~  225 (293)
T d1yhwa1         218 NENPLRAL  225 (293)
T ss_dssp             TSCHHHHH
T ss_pred             CCCHHHHH
Confidence            87766554

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-46  Score=333.45  Aligned_cols=196  Identities=21%  Similarity=0.250  Sum_probs=168.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||+|+||+||+|+++.+++.||||++....  ...+.+.+|+++|+.++|+|      |++++++|..++.+|||||
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~Hpn------Iv~~~~~~~~~~~~~ivmE   83 (271)
T d1nvra_          10 VQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHEN------VVKFYGHRREGNIQYLFLE   83 (271)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTT------BCCEEEEEEETTEEEEEEE
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCC------EeeEeeeeccCceeEEEEe
Confidence            368999999999999999999999999997542  33457889999999999888      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      || +|+|.+++....  .+++..++.++.|++.|                       |+|||++||+|||+||+||.+. 
T Consensus        84 y~~gg~L~~~l~~~~--~l~e~~~~~i~~qi~~a-----------------------l~ylH~~~IiHrDiKp~NILl~-  137 (271)
T d1nvra_          84 YCSGGELFDRIEPDI--GMPEPDAQRFFHQLMAG-----------------------VVYLHGIGITHRDIKPENLLLD-  137 (271)
T ss_dssp             CCTTEEGGGGSBTTT--BCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGEEEC-
T ss_pred             ccCCCcHHHHHhcCC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHcCCccCcccHHHEEEC-
Confidence            99 889999997654  68888888888888888                       9999999999999999999986 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (271)
T d1nvra_         138 --------------------------------------------------------------------------------  137 (271)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeeecCCC-CCccceeeeeeeeEeecccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~  311 (351)
                                    ..+.+||+|||++....     ......+||+.|+|||++.+.++ +.++||||+||++|+|+||.
T Consensus       138 --------------~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~  203 (271)
T d1nvra_         138 --------------ERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGE  203 (271)
T ss_dssp             --------------TTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSS
T ss_pred             --------------CCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCC
Confidence                          23579999999997632     22356789999999999988876 67899999999999999999


Q ss_pred             ccccccCCCce
Q psy2006         312 TLMARKTKTKY  322 (351)
Q Consensus       312 ~pf~~~~~~~~  322 (351)
                      +||...+....
T Consensus       204 ~pf~~~~~~~~  214 (271)
T d1nvra_         204 LPWDQPSDSCQ  214 (271)
T ss_dssp             CSCSSSSTTSH
T ss_pred             CCCCCCChHHH
Confidence            99987765544

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=324.64  Aligned_cols=197  Identities=17%  Similarity=0.275  Sum_probs=174.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|+++.+++.||+|++.+..    ...+.+.+|+++|+.++|+|      |++++++|..++++||||
T Consensus        12 ~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpn------Iv~~~~~~~~~~~~~ivm   85 (263)
T d2j4za1          12 RPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPN------ILRLYGYFHDATRVYLIL   85 (263)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCC------CCeEEEEEEECCEEEEEE
Confidence            67999999999999999999999999997532    33466789999999999888      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||| +|+|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+||+|+.+.
T Consensus        86 Ey~~~g~L~~~l~~~~--~l~e~~~~~i~~qi~~a-----------------------l~~lH~~~ivHrDiKp~Nill~  140 (263)
T d2j4za1          86 EYAPLGTVYRELQKLS--KFDEQRTATYITELANA-----------------------LSYCHSKRVIHRDIKPENLLLG  140 (263)
T ss_dssp             ECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGGEEEC
T ss_pred             eecCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeeeeccccceec
Confidence            999 899999998765  58888888888888888                       9999999999999999999987


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (263)
T d2j4za1         141 --------------------------------------------------------------------------------  140 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                     ..+.+||+|||++.... .......||+.|+|||++.+.+++.++|||||||++|+|++|..||.
T Consensus       141 ---------------~~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~  205 (263)
T d2j4za1         141 ---------------SAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFE  205 (263)
T ss_dssp             ---------------TTSCEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ---------------CCCCEeecccceeeecCCCcccccCCCCcccCHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCC
Confidence                           23578999999997643 33456789999999999999999999999999999999999999999


Q ss_pred             ccCCCceee
Q psy2006         316 RKTKTKYFY  324 (351)
Q Consensus       316 ~~~~~~~~~  324 (351)
                      +.+..+++.
T Consensus       206 ~~~~~~~~~  214 (263)
T d2j4za1         206 ANTYQETYK  214 (263)
T ss_dssp             CSSHHHHHH
T ss_pred             CCCHHHHHH
Confidence            887766653

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-44  Score=334.18  Aligned_cols=198  Identities=19%  Similarity=0.293  Sum_probs=175.2

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++.||+|+||+||+|+++.+++.||||++++..    ...+.+.+|+.+|+.+.|+|      |++++++|..++++|+|
T Consensus        10 ~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~------Iv~l~~~~~~~~~~~iv   83 (337)
T d1o6la_          10 LKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPF------LTALKYAFQTHDRLCFV   83 (337)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTT------BCCEEEEEECSSEEEEE
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCC------EEEEEeeeccccccccc
Confidence            368999999999999999999999999997542    23466789999999999888      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||| ||+|.+++...+  .+++..++.++.|++.|                       |+|||++|++|||+||+|+.+
T Consensus        84 ~ey~~gg~L~~~~~~~~--~~~e~~~~~~~~qil~a-----------------------l~ylH~~~iiHRDlKP~NILl  138 (337)
T d1o6la_          84 MEYANGGELFFHLSRER--VFTEERARFYGAEIVSA-----------------------LEYLHSRDVVYRDIKLENLML  138 (337)
T ss_dssp             EECCTTCBHHHHHHHHS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCCGGGEEE
T ss_pred             eeccCCCchhhhhhccc--CCcHHHHHHHHHHHhhh-----------------------hhhhhhcCccccccCHHHeEe
Confidence            9999 999999998875  57888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       139 ~-------------------------------------------------------------------------------  139 (337)
T d1o6la_         139 D-------------------------------------------------------------------------------  139 (337)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   .......+||+.|+|||++.+.+++.++|+||+||++|+|++|.+
T Consensus       140 ----------------~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~  203 (337)
T d1o6la_         140 ----------------KDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRL  203 (337)
T ss_dssp             ----------------TTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------CCCCEEEeecccccccccCCcccccceeCHHHhhhhhccCCCCChhhcccchhhHHHHHHHCCC
Confidence                            2467999999999753   234456889999999999999999999999999999999999999


Q ss_pred             cccccCCCceee
Q psy2006         313 LMARKTKTKYFY  324 (351)
Q Consensus       313 pf~~~~~~~~~~  324 (351)
                      ||.+.+..+++.
T Consensus       204 pf~~~~~~~~~~  215 (337)
T d1o6la_         204 PFYNQDHERLFE  215 (337)
T ss_dssp             SSCCSSHHHHHH
T ss_pred             CCCCcCHHHHHH
Confidence            999988777654

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-45  Score=329.43  Aligned_cols=197  Identities=18%  Similarity=0.299  Sum_probs=171.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +.||+|+||+||+|+++.+++.||||++.+..    ...+.+.+|+++|++++|+|      |++++++|..++++||||
T Consensus        14 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~l~~~~~~~~~~~ivm   87 (288)
T d1uu3a_          14 KILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPF------FVKLYFTFQDDEKLYFGL   87 (288)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTT------BCCEEEEEECSSEEEEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCC------eeEEEEEEEECCEEEEEE
Confidence            57999999999999999999999999997532    33456889999999999888      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||| ||+|.+++...+  .+++..++.++.|++.|                       |+|||++|++|||+|+.|+.+.
T Consensus        88 Ey~~gg~L~~~~~~~~--~l~e~~~~~~~~qi~~a-----------------------l~ylH~~~iiHrDiKp~NIll~  142 (288)
T d1uu3a_          88 SYAKNGELLKYIRKIG--SFDETCTRFYTAEIVSA-----------------------LEYLHGKGIIHRDLKPENILLN  142 (288)
T ss_dssp             CCCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEEC
T ss_pred             EccCCCCHHHhhhccC--CCCHHHHHHHHHHHHHH-----------------------HHhhccccEEcCcCCccccccC
Confidence            999 899999998875  57888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       143 --------------------------------------------------------------------------------  142 (288)
T d1uu3a_         143 --------------------------------------------------------------------------------  142 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                     ..+.+||+|||++....     ......+||+.|+|||++.+.+++.++||||+||++|+|+||.
T Consensus       143 ---------------~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~  207 (288)
T d1uu3a_         143 ---------------EDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGL  207 (288)
T ss_dssp             ---------------TTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ---------------CCceEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCC
Confidence                           23579999999997632     1234568999999999999999999999999999999999999


Q ss_pred             ccccccCCCceee
Q psy2006         312 TLMARKTKTKYFY  324 (351)
Q Consensus       312 ~pf~~~~~~~~~~  324 (351)
                      .||.+.+..+++.
T Consensus       208 ~Pf~~~~~~~~~~  220 (288)
T d1uu3a_         208 PPFRAGNEYLIFQ  220 (288)
T ss_dssp             CSSCCSSHHHHHH
T ss_pred             CCCCCcCHHHHHH
Confidence            9999887766653

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-44  Score=328.96  Aligned_cols=199  Identities=24%  Similarity=0.317  Sum_probs=172.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +++||+|+||+||+|+++.+++.||+|++... ....+.+.+|+++|+.++|+|      |++++++|..++++||||||
T Consensus        17 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~l~~~~~~~~~~~lvmEy   90 (288)
T d2jfla1          17 IGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPN------IVKLLDAFYYENNLWILIEF   90 (288)
T ss_dssp             EEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTT------BCCEEEEEEETTEEEEEEEC
T ss_pred             eEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCC------CCeEEEEEeeCCeEEEEEec
Confidence            36799999999999999999999999999753 344567889999999999888      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      | +|+|.+++.+.. ..+++..++.++.|++.|                       |+|||++||+|||+||+|+.+.  
T Consensus        91 ~~~g~L~~~~~~~~-~~l~e~~~~~i~~qi~~g-----------------------L~ylH~~~ivHrDiKp~NIll~--  144 (288)
T d2jfla1          91 CAGGAVDAVMLELE-RPLTESQIQVVCKQTLDA-----------------------LNYLHDNKIIHRDLKAGNILFT--  144 (288)
T ss_dssp             CTTEEHHHHHHHHT-SCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC--
T ss_pred             CCCCcHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCEEEeecChhheeEC--
Confidence            9 899999987654 368888888888888888                       9999999999999999999987  


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       145 --------------------------------------------------------------------------------  144 (288)
T d2jfla1         145 --------------------------------------------------------------------------------  144 (288)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeee-----cCCCCCccceeeeeeeeEeeccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVIL-----ELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~-----~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                   ..+.+||+|||++.....   ......||+.|+|||++.     ..+++.++||||+||++|+|+||
T Consensus       145 -------------~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg  211 (288)
T d2jfla1         145 -------------LDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEI  211 (288)
T ss_dssp             -------------TTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHS
T ss_pred             -------------CCCCEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhC
Confidence                         235789999999875332   335678999999999984     45678999999999999999999


Q ss_pred             cccccccCCCceee
Q psy2006         311 ITLMARKTKTKYFY  324 (351)
Q Consensus       311 ~~pf~~~~~~~~~~  324 (351)
                      ..||.+.+..+.+.
T Consensus       212 ~~Pf~~~~~~~~~~  225 (288)
T d2jfla1         212 EPPHHELNPMRVLL  225 (288)
T ss_dssp             SCTTTTSCGGGHHH
T ss_pred             CCCCCCCCHHHHHH
Confidence            99999988777654

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.8e-45  Score=332.11  Aligned_cols=199  Identities=25%  Similarity=0.361  Sum_probs=158.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh--hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEec
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE--KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEI   79 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~--~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~   79 (351)
                      +.||+|+||+||+|+++.+++.||||++.+..  ...+.+.+|+++|+.++|+|      |++++++|..++++||||||
T Consensus        15 ~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~Hpn------Iv~l~~~~~~~~~~~lvmE~   88 (307)
T d1a06a_          15 DVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPN------IVALDDIYESGGHLYLIMQL   88 (307)
T ss_dssp             EESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTT------BCCEEEEEECSSEEEEEECC
T ss_pred             EEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCC------CCcEEEEEEECCEEEEEEec
Confidence            57999999999999999999999999997542  23456778999999999887      99999999999999999999


Q ss_pred             c-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeec
Q psy2006          80 L-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDF  158 (351)
Q Consensus        80 ~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Df  158 (351)
                      | |++|.+++...+  .+++..++.++.|++.|                       |+|||++|++|||+||.|+.+...
T Consensus        89 ~~gg~L~~~l~~~~--~l~e~~~~~~~~qi~~a-----------------------l~ylH~~~iiHrDiKp~Nil~~~~  143 (307)
T d1a06a_          89 VSGGELFDRIVEKG--FYTERDASRLIFQVLDA-----------------------VKYLHDLGIVHRDLKPENLLYYSL  143 (307)
T ss_dssp             CCSCBHHHHHHTCS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEESSS
T ss_pred             cCCCcHHHhhhccc--CCCHHHHHHHHHHHHHH-----------------------HHhhhhceeeeEEecccceeeccc
Confidence            9 899999998764  68888888888888888                       999999999999999999988610


Q ss_pred             CCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhh
Q psy2006         159 GSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADR  238 (351)
Q Consensus       159 g~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~  238 (351)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (307)
T d1a06a_         144 --------------------------------------------------------------------------------  143 (307)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccc
Q psy2006         239 ILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMAR  316 (351)
Q Consensus       239 ~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~  316 (351)
                                  ...+.+||+|||++....  ....+.+||+.|+|||++.+.+++.++||||+||++|+|++|.+||.+
T Consensus       144 ------------~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~  211 (307)
T d1a06a_         144 ------------DEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYD  211 (307)
T ss_dssp             ------------STTCCEEECCC------------------CTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCC
T ss_pred             ------------CCCceEEEeccceeEEccCCCeeeeeeeCccccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCC
Confidence                        023579999999997642  334567899999999999999999999999999999999999999998


Q ss_pred             cCCCcee
Q psy2006         317 KTKTKYF  323 (351)
Q Consensus       317 ~~~~~~~  323 (351)
                      .+..+++
T Consensus       212 ~~~~~~~  218 (307)
T d1a06a_         212 ENDAKLF  218 (307)
T ss_dssp             SSHHHHH
T ss_pred             CCHHHHH
Confidence            8766654

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-44  Score=331.85  Aligned_cols=195  Identities=23%  Similarity=0.296  Sum_probs=169.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +++||+|+||+||+|+++.+++.||+|+++..  ....+.+.+|+++|+.++|+|      ||+++++|..++++|||||
T Consensus        11 ~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~Hpn------Iv~l~~~~~~~~~~~iVmE   84 (322)
T d1s9ja_          11 ISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPY------IVGFYGAFYSDGEISICME   84 (322)
T ss_dssp             EEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTT------BCCEEEEEECSSEEEEEEE
T ss_pred             EEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCC------CCcEEEEEEECCEEEEEEE
Confidence            36899999999999999999999999999753  334567889999999999887      9999999999999999999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccc-cccccccCCCCeEEe
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKK-KREVRRVRRCDIRLI  156 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~-~i~h~d~k~~ni~l~  156 (351)
                      || |++|.+++.+.+  .+++..++.++.|++.|                       |+|||++ ||+|||+||+||.+.
T Consensus        85 y~~gg~L~~~l~~~~--~l~~~~~~~~~~qil~a-----------------------L~yLH~~~~IiHRDiKP~NILl~  139 (322)
T d1s9ja_          85 HMDGGSLDQVLKKAG--RIPEQILGKVSIAVIKG-----------------------LTYLREKHKIMHRDVKPSNILVN  139 (322)
T ss_dssp             CCTTEEHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHHHCCCCSCCSGGGEEEC
T ss_pred             cCCCCcHHHHHhhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHhCCEEccccCHHHeeEC
Confidence            99 889999998765  57888888888888888                       9999975 899999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (322)
T d1s9ja_         140 --------------------------------------------------------------------------------  139 (322)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCccee-ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFD-DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                     ..+.+||+|||++... .....+.+||+.|+|||++.+.+++.++||||+||++|+|++|+.||.
T Consensus       140 ---------------~~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~DiWSlGvil~ell~G~~Pf~  204 (322)
T d1s9ja_         140 ---------------SRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIP  204 (322)
T ss_dssp             ---------------TTCCEEECCCCCCHHHHHHTC---CCSSCCCCHHHHHCSCCCTTHHHHHHHHHHHHHHHSSCCSS
T ss_pred             ---------------CCCCEEEeeCCCccccCCCccccccCCccccCchHHcCCCCCcHHHHHHHHHHHHHHHHCCCCCC
Confidence                           2357999999998763 334456799999999999999999999999999999999999999998


Q ss_pred             ccCCCc
Q psy2006         316 RKTKTK  321 (351)
Q Consensus       316 ~~~~~~  321 (351)
                      +.+..+
T Consensus       205 ~~~~~~  210 (322)
T d1s9ja_         205 PPDAKE  210 (322)
T ss_dssp             CCCTTH
T ss_pred             CCCHHH
Confidence            876543

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=3.4e-44  Score=334.09  Aligned_cols=223  Identities=20%  Similarity=0.265  Sum_probs=183.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch-hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV-EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~-~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||+|+||+||+|+++.+|+.||||++... ....+.+.+|+++|++++|+|      |++++++|...+++|||||||
T Consensus        32 ~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~~~~~~~~~~~~~ivmE~~  105 (350)
T d1koaa2          32 EELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT------LVNLHDAFEDDNEMVMIYEFM  105 (350)
T ss_dssp             EEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTT------BCCEEEEEEETTEEEEEECCC
T ss_pred             EEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCC------CCcEEEEEEECCEEEEEEEcC
Confidence            6799999999999999999999999999754 344567889999999999888      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       ||+|.+++.... ..+++..++.++.||+.|                       |+|||++|++|||+|++||.+.+  
T Consensus       106 ~gg~L~~~l~~~~-~~l~e~~~~~i~~qi~~a-----------------------L~ylH~~~iiHrDiKp~NIll~~--  159 (350)
T d1koaa2         106 SGGELFEKVADEH-NKMSEDEAVEYMRQVCKG-----------------------LCHMHENNYVHLDLKPENIMFTT--  159 (350)
T ss_dssp             CSCBHHHHHTCTT-SCBCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEESS--
T ss_pred             CCCCHHHHHHhhc-CCCCHHHHHHHHHHHHHH-----------------------HHHHHhcCCeeeeechhHeeecc--
Confidence             899999986553 368888888888888888                       99999999999999999998861  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       160 --------------------------------------------------------------------------------  159 (350)
T d1koaa2         160 --------------------------------------------------------------------------------  159 (350)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                 ...+.+||+|||++.....  ......||+.|+|||++.+.+++.++||||+||++|+|+||..||.+.
T Consensus       160 -----------~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~  228 (350)
T d1koaa2         160 -----------KRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGE  228 (350)
T ss_dssp             -----------TTSCCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred             -----------CCCCeEEEeecchheecccccccceecCcccccCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCC
Confidence                       0135799999999976433  334578999999999999999999999999999999999999999988


Q ss_pred             CCCceeee-cccCCcccccccccccccCccC
Q psy2006         318 TKTKYFYH-GKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       318 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      +..+.+.. ....|.........+++++++|
T Consensus       229 ~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~l  259 (350)
T d1koaa2         229 NDDETLRNVKSCDWNMDDSAFSGISEDGKDF  259 (350)
T ss_dssp             SHHHHHHHHHHTCCCSCCGGGGGCCHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccccCCCHHHHHH
Confidence            87776542 1222222222223566665543

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-43  Score=319.45  Aligned_cols=196  Identities=14%  Similarity=0.220  Sum_probs=167.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee----CCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY----HGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~----~~~~~   74 (351)
                      ++||+|+||+||+|+++.+++.||+|++...   ....+.+.+|+++|++++|+|      |++++++|..    +.++|
T Consensus        15 ~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~~~~~~~~~~~~~~~~~   88 (270)
T d1t4ha_          15 IEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPN------IVRFYDSWESTVKGKKCIV   88 (270)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTT------BCCEEEEEEEESSSCEEEE
T ss_pred             eEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCC------eeeEEEEEeeccccCCEEE
Confidence            4799999999999999999999999999653   234567889999999999888      9999999975    34799


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc--ccccccCCC
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK--REVRRVRRC  151 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~--i~h~d~k~~  151 (351)
                      |||||| +++|.+++++..  .+++..++.++.|++.|                       |+|||+++  |+|||+||+
T Consensus        89 ivmE~~~~g~L~~~l~~~~--~~~~~~~~~~~~qi~~g-----------------------l~yLH~~~~~IiHrDiKp~  143 (270)
T d1t4ha_          89 LVTELMTSGTLKTYLKRFK--VMKIKVLRSWCRQILKG-----------------------LQFLHTRTPPIIHRDLKCD  143 (270)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHTSSSCCCCSCCCGG
T ss_pred             EEEeCCCCCcHHHHHhccc--cccHHHHHHHHHHHHHH-----------------------HHHHHHCCCCEEeCCcChh
Confidence            999999 899999998865  57888888888888888                       99999998  999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.+.+                                                                          
T Consensus       144 NILl~~--------------------------------------------------------------------------  149 (270)
T d1t4ha_         144 NIFITG--------------------------------------------------------------------------  149 (270)
T ss_dssp             GEEESS--------------------------------------------------------------------------
T ss_pred             hceeeC--------------------------------------------------------------------------
Confidence            998852                                                                          


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                          ..+.+||+|||++.... ....+.+||+.|+|||++. .+++.++||||+||++|+|++|
T Consensus       150 --------------------~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~-~~~~~~~DIwSlGvilyel~~g  208 (270)
T d1t4ha_         150 --------------------PTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATS  208 (270)
T ss_dssp             --------------------TTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHS
T ss_pred             --------------------CCCCEEEeecCcceeccCCccCCcccCccccCHHHhC-CCCCCcCchhhHHHHHHHHHHC
Confidence                                13469999999997643 3345678999999999885 4699999999999999999999


Q ss_pred             cccccccCCCcee
Q psy2006         311 ITLMARKTKTKYF  323 (351)
Q Consensus       311 ~~pf~~~~~~~~~  323 (351)
                      +.||.+.+..+..
T Consensus       209 ~~Pf~~~~~~~~~  221 (270)
T d1t4ha_         209 EYPYSECQNAAQI  221 (270)
T ss_dssp             SCTTTTCSSHHHH
T ss_pred             CCCCCCcccHHHH
Confidence            9999876655433

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=6.9e-44  Score=332.25  Aligned_cols=200  Identities=19%  Similarity=0.220  Sum_probs=174.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      ++||+|+||+||+|+++.+++.||||++.... ...+.+.+|+.+|+.++|+|      |++++++|..++++|||||||
T Consensus        35 ~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~Hpn------Iv~~~~~~~~~~~~~ivmE~~  108 (352)
T d1koba_          35 EELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPK------LINLHDAFEDKYEMVLILEFL  108 (352)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTT------BCCEEEEEECSSEEEEEEECC
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCC------CCcEEEEEEECCEEEEEEEcC
Confidence            68999999999999999999999999997642 34557789999999999887      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       ||+|.+++.... .++++..++.++.|++.|                       |.|||++|++|||+||.||.|..  
T Consensus       109 ~gg~L~~~~~~~~-~~l~e~~~~~i~~qi~~a-----------------------L~ylH~~~iiHRDiKp~NILl~~--  162 (352)
T d1koba_         109 SGGELFDRIAAED-YKMSEAEVINYMRQACEG-----------------------LKHMHEHSIVHLDIKPENIMCET--  162 (352)
T ss_dssp             CCCBHHHHTTCTT-CCBCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEESS--
T ss_pred             CCChHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHCCeeecccccccccccc--
Confidence             899999887654 468888888888888888                       99999999999999999998751  


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (352)
T d1koba_         163 --------------------------------------------------------------------------------  162 (352)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARK  317 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~  317 (351)
                                 ...+.+||+|||++.....  ......||+.|+|||++.+.+++.++||||+||++|+|+||..||.+.
T Consensus       163 -----------~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~  231 (352)
T d1koba_         163 -----------KKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGE  231 (352)
T ss_dssp             -----------TTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCS
T ss_pred             -----------cCCCeEEEeecccceecCCCCceeeccCcccccCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCC
Confidence                       0135799999999976432  334578999999999999999999999999999999999999999988


Q ss_pred             CCCceee
Q psy2006         318 TKTKYFY  324 (351)
Q Consensus       318 ~~~~~~~  324 (351)
                      +..+.+.
T Consensus       232 ~~~~~~~  238 (352)
T d1koba_         232 DDLETLQ  238 (352)
T ss_dssp             SHHHHHH
T ss_pred             CHHHHHH
Confidence            8777653

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-43  Score=324.53  Aligned_cols=197  Identities=21%  Similarity=0.306  Sum_probs=175.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||+|+||+||+|+++.+|+.||||++.+..    ...+.+.+|+.+|+.++|+|      |++++++|..++++|+|
T Consensus         9 ~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~~~~~~~~~~~~~iv   82 (316)
T d1fota_           9 LRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPF------IIRMWGTFQDAQQIFMI   82 (316)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTT------BCCEEEEEECSSEEEEE
T ss_pred             EEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcC------hhheeeeEeeCCeeeeE
Confidence            368999999999999999999999999997532    33467889999999999888      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||| |++|.+++....  .+++..++.++.|++.|                       |+|||++||+|||+||+||.+
T Consensus        83 mE~~~gg~l~~~~~~~~--~~~~~~~~~~~~qi~~a-----------------------l~~lH~~~iiHrDiKp~NILl  137 (316)
T d1fota_          83 MDYIEGGELFSLLRKSQ--RFPNPVAKFYAAEVCLA-----------------------LEYLHSKDIIYRDLKPENILL  137 (316)
T ss_dssp             ECCCCSCBHHHHHHHTS--SCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECCCCCGGGEEE
T ss_pred             eeecCCccccccccccc--cccccHHHHHHHHHHHh-----------------------hhhhccCcEEccccCchheeE
Confidence            9999 899999988775  56777788888888877                       999999999999999999998


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       138 ~-------------------------------------------------------------------------------  138 (316)
T d1fota_         138 D-------------------------------------------------------------------------------  138 (316)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                      ..+.+||+|||++........+.+||+.|+|||++.+.+++.++||||+||++|+|+||..||.
T Consensus       139 ----------------~~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l~~~~y~~~~DiwSlGvilyemltG~~Pf~  202 (316)
T d1fota_         139 ----------------KNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFY  202 (316)
T ss_dssp             ----------------TTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTC
T ss_pred             ----------------CCCCEEEecCccceEeccccccccCcccccCHHHHcCCCCCchhhccccchhHHHHHhCCCCCC
Confidence                            2457999999999887767778899999999999999999999999999999999999999999


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+++
T Consensus       203 ~~~~~~~~  210 (316)
T d1fota_         203 DSNTMKTY  210 (316)
T ss_dssp             CSSHHHHH
T ss_pred             CcCHHHHH
Confidence            88776655

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-43  Score=323.29  Aligned_cols=201  Identities=23%  Similarity=0.310  Sum_probs=174.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|+++.+|+.||||++.+..       ...+.+.+|+++|++++|+|      |++++++|...+++|
T Consensus        16 ~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~~~~~~~~~~~~~   89 (293)
T d1jksa_          16 EELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPN------VITLHEVYENKTDVI   89 (293)
T ss_dssp             EEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTT------BCCEEEEEECSSEEE
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCC------CCcEEEEEEECCEEE
Confidence            67999999999999999999999999996431       23467889999999999887      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |||||| ||+|.+++...+  .+++..++.++.|++.|                       |+|||+++++|||+|+.|+
T Consensus        90 iv~E~~~gg~L~~~i~~~~--~l~~~~~~~~~~qi~~a-----------------------l~yLH~~~ivHrDiKp~Ni  144 (293)
T d1jksa_          90 LILELVAGGELFDFLAEKE--SLTEEEATEFLKQILNG-----------------------VYYLHSLQIAHFDLKPENI  144 (293)
T ss_dssp             EEEECCCSCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGE
T ss_pred             EEEEcCCCccccchhcccc--ccchhHHHHHHHHHHHH-----------------------HHhhhhcceeecccccceE
Confidence            999999 899999998865  58888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.+-|.                                                                         
T Consensus       145 ll~~~~~-------------------------------------------------------------------------  151 (293)
T d1jksa_         145 MLLDRNV-------------------------------------------------------------------------  151 (293)
T ss_dssp             EESCSSS-------------------------------------------------------------------------
T ss_pred             EEecCCC-------------------------------------------------------------------------
Confidence            9873221                                                                         


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                        ....+|++|||++....  .......||+.|+|||++.+..++.++||||+||++|+|++|.
T Consensus       152 ------------------~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~  213 (293)
T d1jksa_         152 ------------------PKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGA  213 (293)
T ss_dssp             ------------------SSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------cccceEecchhhhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCC
Confidence                              13469999999987643  3445678999999999999989999999999999999999999


Q ss_pred             ccccccCCCceee
Q psy2006         312 TLMARKTKTKYFY  324 (351)
Q Consensus       312 ~pf~~~~~~~~~~  324 (351)
                      .||.+.+..+.+.
T Consensus       214 ~Pf~~~~~~~~~~  226 (293)
T d1jksa_         214 SPFLGDTKQETLA  226 (293)
T ss_dssp             CSSCCSSHHHHHH
T ss_pred             CCCCCCCHHHHHH
Confidence            9999988777653

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.7e-43  Score=329.54  Aligned_cols=197  Identities=21%  Similarity=0.286  Sum_probs=176.3

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||+|+||+||+|+++.+|+.||||++.+..    ...+.+.+|+++|+.++|+|      |++++++|....++++|
T Consensus        46 ~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpn------Iv~~~~~~~~~~~~~~v  119 (350)
T d1rdqe_          46 IKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPF------LVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             EEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTT------BCCEEEEEECSSEEEEE
T ss_pred             EEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCc------Eeecccccccccccccc
Confidence            468999999999999999999999999997532    33456789999999999888      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +++|.+++...+  .+++..++.++.||+.|                       |.|||+++|+|||+||.||.+
T Consensus       120 ~e~~~~g~l~~~l~~~~--~l~e~~~~~i~~qi~~a-----------------------L~yLH~~~iiHRDIKP~NILl  174 (350)
T d1rdqe_         120 MEYVAGGEMFSHLRRIG--RFSEPHARFYAAQIVLT-----------------------FEYLHSLDLIYRDLKPENLLI  174 (350)
T ss_dssp             EECCTTCBHHHHHHHHC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEE
T ss_pred             cccccccchhhhHhhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEecCcCCHHHccc
Confidence            9999 999999998875  57888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       175 ~-------------------------------------------------------------------------------  175 (350)
T d1rdqe_         175 D-------------------------------------------------------------------------------  175 (350)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA  315 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~  315 (351)
                                      ..+.+||+|||++...........||+.|+|||++.+.+++.++|||||||++|+|+||..||.
T Consensus       176 ----------------~~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~  239 (350)
T d1rdqe_         176 ----------------QQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFF  239 (350)
T ss_dssp             ----------------TTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSC
T ss_pred             ----------------CCCCEEeeeceeeeecccccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCC
Confidence                            2457999999999887666677899999999999999999999999999999999999999999


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      +.+..+++
T Consensus       240 ~~~~~~~~  247 (350)
T d1rdqe_         240 ADQPIQIY  247 (350)
T ss_dssp             CSSHHHHH
T ss_pred             CcCHHHHH
Confidence            88766654

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-43  Score=325.34  Aligned_cols=196  Identities=20%  Similarity=0.274  Sum_probs=167.6

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEee----CCeEEEEE
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDY----HGHMCIAF   77 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~----~~~~~lV~   77 (351)
                      .||+|+||+||+|+++.+++.||||++..    .+.+.+|+.++.++ .|+|      |++++++|..    +.++||||
T Consensus        19 ~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~----~~~~~~E~~~~~~~~~hpn------Iv~l~~~~~~~~~~~~~~~ivm   88 (335)
T d2ozaa1          19 VLGLGINGKVLQIFNKRTQEKFALKMLQD----CPKARREVELHWRASQCPH------IVRIVDVYENLYAGRKCLLIVM   88 (335)
T ss_dssp             EEEECSSCEEEEEEETTTCCEEEEEEEEC----SHHHHHHHHHHHHHTTSTT------BCCEEEEEEEEETTEEEEEEEE
T ss_pred             EeeeccCeEEEEEEECCCCCEEEEEEECC----cHHHHHHHHHHHHhcCCCC------CCeEEEEEeecccCCCEEEEEE
Confidence            49999999999999999999999999975    35567899987665 5776      9999999976    45899999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||| ||+|.+++...+...+++..++.++.|++.|                       |+|||++|++|||+||+|+.+.
T Consensus        89 Ey~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~a-----------------------l~ylH~~~iiHRDiKp~NIll~  145 (335)
T d2ozaa1          89 ECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEA-----------------------IQYLHSINIAHRDVKPENLLYT  145 (335)
T ss_dssp             ECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEES
T ss_pred             ECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHH-----------------------HHHHHHcCCccccccccccccc
Confidence            999 8999999988765678999999999988888                       9999999999999999999887


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      +.+                                                                             
T Consensus       146 ~~~-----------------------------------------------------------------------------  148 (335)
T d2ozaa1         146 SKR-----------------------------------------------------------------------------  148 (335)
T ss_dssp             CSS-----------------------------------------------------------------------------
T ss_pred             ccc-----------------------------------------------------------------------------
Confidence            311                                                                             


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLM  314 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf  314 (351)
                                     ....+||+|||++...  .......+||+.|+|||++.+..++.++|||||||++|+|+||.+||
T Consensus       149 ---------------~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf  213 (335)
T d2ozaa1         149 ---------------PNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPF  213 (335)
T ss_dssp             ---------------TTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSC
T ss_pred             ---------------ccccccccccceeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCC
Confidence                           1346999999999763  33445678999999999999999999999999999999999999999


Q ss_pred             cccCCCcee
Q psy2006         315 ARKTKTKYF  323 (351)
Q Consensus       315 ~~~~~~~~~  323 (351)
                      .+.+..+..
T Consensus       214 ~~~~~~~~~  222 (335)
T d2ozaa1         214 YSNHGLAIS  222 (335)
T ss_dssp             EETTCC---
T ss_pred             CCCCHHHHH
Confidence            988765543

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-43  Score=326.10  Aligned_cols=220  Identities=18%  Similarity=0.267  Sum_probs=184.1

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|+++.+++.||||+++........+.+|+++|+.++|+|      |++++++|++++++||||||| 
T Consensus        11 ~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~~~~~~~~~~Ei~il~~l~Hpn------Iv~~~~~~~~~~~~~lvmE~~~   84 (321)
T d1tkia_          11 EDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRN------ILHLHESFESMEELVMIFEFIS   84 (321)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECCCTHHHHHHHHHHHHHHHSCCTT------BCCEEEEEEETTEEEEEECCCC
T ss_pred             EEEecCCCeEEEEEEECCCCcEEEEEEEcCCcccHHHHHHHHHHHHhCCCCC------CCeEEEEEEECCEEEEEEecCC
Confidence            6799999999999999999999999999876655667889999999999888      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      |++|.+++...+ ..+++..++.++.||+.|                       |+|||++|++|||+||.|+.+.+-  
T Consensus        85 gg~L~~~i~~~~-~~l~e~~~~~i~~qi~~a-----------------------l~yLH~~~iiHrDlKp~NIll~~~--  138 (321)
T d1tkia_          85 GLDIFERINTSA-FELNEREIVSYVHQVCEA-----------------------LQFLHSHNIGHFDIRPENIIYQTR--  138 (321)
T ss_dssp             CCBHHHHHTSSS-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGEEESSS--
T ss_pred             CCcHHHHHHhcC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHcCCCcccccccceeecCC--
Confidence            889999997764 357888888888888888                       999999999999999999988620  


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (321)
T d1tkia_         139 --------------------------------------------------------------------------------  138 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccccccccC
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMARKT  318 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~~~~  318 (351)
                                 ....+||+|||++....  .......+|+.|+|||.+.+..++.++||||+||++|+|++|.+||.+.+
T Consensus       139 -----------~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~  207 (321)
T d1tkia_         139 -----------RSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAET  207 (321)
T ss_dssp             -----------SCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSS
T ss_pred             -----------CceEEEEcccchhhccccCCcccccccccccccchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCC
Confidence                       13468999999987643  23455788999999999988889999999999999999999999999988


Q ss_pred             CCceee---ecccCCcccccccccccccCcc
Q psy2006         319 KTKYFY---HGKLDWDEKGTAGRYVRENCKP  346 (351)
Q Consensus       319 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  346 (351)
                      ..+.+.   ++.+.++...+  +.+++++++
T Consensus       208 ~~~~~~~i~~~~~~~~~~~~--~~~s~~~~~  236 (321)
T d1tkia_         208 NQQIIENIMNAEYTFDEEAF--KEISIEAMD  236 (321)
T ss_dssp             HHHHHHHHHHTCCCCCHHHH--TTSCHHHHH
T ss_pred             HHHHHHHHHhCCCCCChhhc--cCCCHHHHH
Confidence            777654   34444443322  234555544

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.9e-43  Score=321.62  Aligned_cols=196  Identities=19%  Similarity=0.200  Sum_probs=167.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +++||+|+||+||+|+++.+++.||||++...    ....+.+.+|+++|++++|+|      ||+++++|..++++|||
T Consensus        20 l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~Hpn------Iv~~~~~~~~~~~~~iv   93 (309)
T d1u5ra_          20 LREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPN------TIQYRGCYLREHTAWLV   93 (309)
T ss_dssp             EEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTT------BCCEEEEEEETTEEEEE
T ss_pred             eEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCC------EeeEEEEEEECCEEEEE
Confidence            46899999999999999999999999999653    233456889999999999888      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||| +++|..++....  ++++..++.++.|++.|                       |.|||++|++|||+||.||.|
T Consensus        94 ~E~~~~g~l~~~~~~~~--~l~e~~~~~i~~qi~~a-----------------------L~yLH~~~iiHrDiKp~NILl  148 (309)
T d1u5ra_          94 MEYCLGSASDLLEVHKK--PLQEVEIAAVTHGALQG-----------------------LAYLHSHNMIHRDVKAGNILL  148 (309)
T ss_dssp             EECCSEEHHHHHHHHTS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCSGGGEEE
T ss_pred             EEecCCCchHHHHHhCC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEeccCCCcceEEE
Confidence            9999 777766655543  68888888888888888                       999999999999999999998


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       149 ~-------------------------------------------------------------------------------  149 (309)
T d1u5ra_         149 S-------------------------------------------------------------------------------  149 (309)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            7                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeec---CCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++..... .....||+.|+|||++.+   ..++.++|||||||++|+|++|..
T Consensus       150 ----------------~~~~~Kl~DFG~a~~~~~-~~~~~GT~~Y~APE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~  212 (309)
T d1u5ra_         150 ----------------EPGLVKLGDFGSASIMAP-ANSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKP  212 (309)
T ss_dssp             ----------------TTTEEEECCCTTCBSSSS-BCCCCSCGGGCCHHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------CCCCEEEeecccccccCC-CCccccCccccCHHHHhccCCCCcCchhhhhhHHHHHHHHHHCCC
Confidence                            235799999999976433 345689999999999864   457899999999999999999999


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+.+
T Consensus       213 Pf~~~~~~~~~  223 (309)
T d1u5ra_         213 PLFNMNAMSAL  223 (309)
T ss_dssp             TTTTSCHHHHH
T ss_pred             CCCCCCHHHHH
Confidence            99887766654

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-43  Score=315.95  Aligned_cols=199  Identities=17%  Similarity=0.255  Sum_probs=160.6

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee--CCeEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY--HGHMCI   75 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~--~~~~~l   75 (351)
                      ++.||+|+||+||+|+++.+|+.||+|++...   +...+.+.+|+++|++++|+|      |++++++|.+  ++.+||
T Consensus         9 ~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~~~~~~~~~~~~~~~i   82 (269)
T d2java1           9 LYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPN------IVRYYDRIIDRTNTTLYI   82 (269)
T ss_dssp             EEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTT------BCCEEEEEEC----CEEE
T ss_pred             eEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCC------EeeEEEEEEeCCCCEEEE
Confidence            36899999999999999999999999999653   234456789999999999888      9999999964  457999


Q ss_pred             EEecc-CCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc-----ccccc
Q psy2006          76 AFEIL-GLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK-----REVRR  147 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~-----i~h~d  147 (351)
                      ||||| +|+|.+++...  ....+++..++.++.|++.|                       |+|||+++     |+|||
T Consensus        83 vmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~a-----------------------l~ylH~~~~~~~~IiHrD  139 (269)
T d2java1          83 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLA-----------------------LKECHRRSDGGHTVLHRD  139 (269)
T ss_dssp             EEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH-----------------------HHHHHHHCC---------
T ss_pred             EEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHhcCCCCCEEeCc
Confidence            99999 89999998753  23468888888888888888                       99999976     99999


Q ss_pred             cCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         148 VRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       148 ~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +||+||.+.                                                                       
T Consensus       140 iKp~NIll~-----------------------------------------------------------------------  148 (269)
T d2java1         140 LKPANVFLD-----------------------------------------------------------------------  148 (269)
T ss_dssp             CCGGGEEEC-----------------------------------------------------------------------
T ss_pred             CchhhcCcC-----------------------------------------------------------------------
Confidence            999999886                                                                       


Q ss_pred             hhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCCCCCccceeeeeeee
Q psy2006         228 VRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCII  304 (351)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l  304 (351)
                                              ..+.+||+|||++.....   ......||+.|+|||++.+.+++.++|||||||++
T Consensus       149 ------------------------~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvil  204 (269)
T d2java1         149 ------------------------GKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLL  204 (269)
T ss_dssp             ------------------------TTSCEEECCHHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             ------------------------CCCcEEEeeccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHH
Confidence                                    235799999999875322   23457899999999999999999999999999999


Q ss_pred             EeeccccccccccCCCcee
Q psy2006         305 FELYLGITLMARKTKTKYF  323 (351)
Q Consensus       305 ~~l~tG~~pf~~~~~~~~~  323 (351)
                      |+|+||..||.+.+..+++
T Consensus       205 yel~tg~~Pf~~~~~~~~~  223 (269)
T d2java1         205 YELCALMPPFTAFSQKELA  223 (269)
T ss_dssp             HHHHHSSCSCCCSSHHHHH
T ss_pred             HHHhhCCCCCCCCCHHHHH
Confidence            9999999999988776654

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.3e-42  Score=323.47  Aligned_cols=196  Identities=17%  Similarity=0.228  Sum_probs=163.3

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHH---HHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEI---NALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~---~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|+++.+|+.||||++.+..    .....+.+|.   ++++.+.|+|      |++++++|..++++|
T Consensus        10 ~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpn------Iv~l~~~~~~~~~~~   83 (364)
T d1omwa3          10 RIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPF------IVCMSYAFHTPDKLS   83 (364)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTT------BCCEEEEEECSSEEE
T ss_pred             eEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCc------EEEEEEEEEECCEEE
Confidence            68999999999999999999999999997532    1223344554   4444555555      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |||||| |++|.+++....  .+++..++.++.|++.|                       |+|||++|++|||+||.||
T Consensus        84 ivmE~~~gg~L~~~l~~~~--~~~e~~~~~~~~qi~~a-----------------------L~ylH~~~iiHrDlKP~NI  138 (364)
T d1omwa3          84 FILDLMNGGDLHYHLSQHG--VFSEADMRFYAAEIILG-----------------------LEHMHNRFVVYRDLKPANI  138 (364)
T ss_dssp             EEECCCCSCBHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGE
T ss_pred             EEEEecCCCcHHHHHHhcc--cccHHHHHHHHHHHHHH-----------------------HHHHHHCCccceeecccee
Confidence            999999 899999998875  57788888888888877                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       139 Ll~-----------------------------------------------------------------------------  141 (364)
T d1omwa3         139 LLD-----------------------------------------------------------------------------  141 (364)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EEc-----------------------------------------------------------------------------
Confidence            886                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeec-CCCCCccceeeeeeeeEeecccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                        ..+.+||+|||++.... ......+||+.|+|||++.. ..++.++||||+||++|+|+||.
T Consensus       142 ------------------~~g~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~~~~DiwSlGvilyemltG~  203 (364)
T d1omwa3         142 ------------------EHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGH  203 (364)
T ss_dssp             ------------------SSSCEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSS
T ss_pred             ------------------CCCcEEEeeeceeeecCCCcccccccccccchhHHhhcCCCCCcccchhHHHHHHHHHHhCC
Confidence                              23579999999997643 34456789999999999974 56899999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      .||.+.+..+..
T Consensus       204 ~Pf~~~~~~~~~  215 (364)
T d1omwa3         204 SPFRQHKTKDKH  215 (364)
T ss_dssp             CSSCSSCSSCHH
T ss_pred             CCCCCCCHHHHH
Confidence            999887765543

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-42  Score=317.28  Aligned_cols=197  Identities=19%  Similarity=0.310  Sum_probs=170.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----hhhHHHHHHHHHHH-HhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----KYREAARLEINALQ-KIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----~~~~~~~~E~~~l~-~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|+++.+++.||||++++..    ...+.+..|..++. .++|+|      |++++++|..++++|||
T Consensus         8 ~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~------Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           8 KMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPF------LTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTT------BCCEEEEEECSSEEEEE
T ss_pred             eEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCc------EEEEEEEEccCCceeEE
Confidence            68999999999999999999999999997532    23345677877765 578777      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||| +|+|.+++....  .+++..++.++.|++.|                       |+|||+++++|||+|+.|+.+
T Consensus        82 mEy~~~g~L~~~i~~~~--~~~e~~~~~~~~qi~~a-----------------------l~ylH~~~iiHrDikp~NiL~  136 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCH--KFDLSRATFYAAEIILG-----------------------LQFLHSKGIVYRDLKLDNILL  136 (320)
T ss_dssp             EECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCBCCCCCGGGEEE
T ss_pred             EeecCCCcHHHHhhccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeeeccCcccceee
Confidence            9999 899999998765  57888888888888888                       999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       137 ~-------------------------------------------------------------------------------  137 (320)
T d1xjda_         137 D-------------------------------------------------------------------------------  137 (320)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCccee---ccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccccc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                      ..+.+||+|||++...   ........||+.|+|||++.+.+++.++|+||+||++|+|+||..
T Consensus       138 ----------------~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~  201 (320)
T d1xjda_         138 ----------------KDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQS  201 (320)
T ss_dssp             ----------------TTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred             ----------------CCCceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCC
Confidence                            2457899999998753   223345789999999999999999999999999999999999999


Q ss_pred             cccccCCCceee
Q psy2006         313 LMARKTKTKYFY  324 (351)
Q Consensus       313 pf~~~~~~~~~~  324 (351)
                      ||.+.+..+++.
T Consensus       202 PF~~~~~~~~~~  213 (320)
T d1xjda_         202 PFHGQDEEELFH  213 (320)
T ss_dssp             SSCCSSHHHHHH
T ss_pred             CCCCCCHHHHHH
Confidence            999988777653

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.3e-42  Score=310.60  Aligned_cols=196  Identities=19%  Similarity=0.183  Sum_probs=169.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|+++.+++.||||+++......+.+.+|+++|++++|+|      |++++++|..+++++|||||| 
T Consensus        23 ~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~E~~il~~l~Hpn------Iv~~~~~~~~~~~~~iv~E~~~   96 (287)
T d1opja_          23 HKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPN------LVQLLGVCTREPPFYIITEFMT   96 (287)
T ss_dssp             EETTTTTTSSEEEEEEGGGTEEEEEEECCTTCSCHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSCEEEEECCT
T ss_pred             eEEeeCCCeEEEEEEECCCCeEEEEEEECCccchHHHHHHHHHHHHhCCCCC------EecCCccEeeCCeeEEEeeccc
Confidence            5799999999999999999999999999876666678899999999999888      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +|+|.+++.......+++..+..++.|++.|                       |+|||++||+|||+|+.||.|.    
T Consensus        97 ~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~g-----------------------L~yLH~~~iiHrDlKp~NILl~----  149 (287)
T d1opja_          97 YGNLLDYLRECNRQEVSAVVLLYMATQISSA-----------------------MEYLEKKNFIHRDLAARNCLVG----  149 (287)
T ss_dssp             TCBHHHHHHHSCTTTSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEEC----
T ss_pred             CcchHHHhhhccccchHHHHHHHHHHHHHHH-----------------------HHHHHHCCcccCccccCeEEEC----
Confidence            8999999988766678888888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (287)
T d1opja_         150 --------------------------------------------------------------------------------  149 (287)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceeccc----cccccccceeeCceeeecCCCCCccceeeeeeeeEeecccccccc-
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGITLMA-  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~~pf~-  315 (351)
                                 ..+.+||+|||+++.....    .....|++.|+|||++.+..++.++|||||||++|+|++|..||. 
T Consensus       150 -----------~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~  218 (287)
T d1opja_         150 -----------ENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYP  218 (287)
T ss_dssp             -----------GGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSST
T ss_pred             -----------CCCcEEEccccceeecCCCCceeeccccccccccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCC
Confidence                       2457999999999764322    123457889999999999999999999999999999999666654 


Q ss_pred             ccCCCc
Q psy2006         316 RKTKTK  321 (351)
Q Consensus       316 ~~~~~~  321 (351)
                      +.+..+
T Consensus       219 ~~~~~~  224 (287)
T d1opja_         219 GIDLSQ  224 (287)
T ss_dssp             TCCHHH
T ss_pred             cchHHH
Confidence            444333

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=8.3e-42  Score=308.08  Aligned_cols=218  Identities=22%  Similarity=0.319  Sum_probs=179.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh----------hhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE----------KYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYH   70 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~----------~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~   70 (351)
                      +.||+|+||+||+|++..+++.||||++.+..          ...+.+.+|+.+|++++ |+|      |++++++|.++
T Consensus         9 ~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpn------Iv~~~~~~~~~   82 (277)
T d1phka_           9 EILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPN------IIQLKDTYETN   82 (277)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTT------BCCEEEEEECS
T ss_pred             eEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCC------eEEEEeecccC
Confidence            67999999999999999999999999996531          22346789999999997 777      99999999999


Q ss_pred             CeEEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccC
Q psy2006          71 GHMCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR  149 (351)
Q Consensus        71 ~~~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k  149 (351)
                      +++||||||| +++|.++++...  ++++..++.++.||+.|                       |+|||++|++|||+|
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~--~l~e~~~~~~~~qi~~a-----------------------l~~lH~~~ivHrDlk  137 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKV--TLSEKETRKIMRALLEV-----------------------ICALHKLNIVHRDLK  137 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHS--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCS
T ss_pred             cceEEEEEcCCCchHHHHHHhcC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHcCCcccccc
Confidence            9999999999 899999998765  68888888888888888                       999999999999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      ++|+.+.                                                                         
T Consensus       138 p~Nill~-------------------------------------------------------------------------  144 (277)
T d1phka_         138 PENILLD-------------------------------------------------------------------------  144 (277)
T ss_dssp             GGGEEEC-------------------------------------------------------------------------
T ss_pred             cceEEEc-------------------------------------------------------------------------
Confidence            9999886                                                                         


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeec------CCCCCccceeeee
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILE------LGWAQPCDVWSIG  301 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~------~~~~~~~DiwslG  301 (351)
                                            ....+||+|||++.....  ......||+.|+|||.+.+      ..++.++||||+|
T Consensus       145 ----------------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslG  202 (277)
T d1phka_         145 ----------------------DDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTG  202 (277)
T ss_dssp             ----------------------TTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHH
T ss_pred             ----------------------CCCCeEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccc
Confidence                                  245799999999976432  3455789999999999874      3457889999999


Q ss_pred             eeeEeeccccccccccCCCceee---ecccCCcccccccccccccCccC
Q psy2006         302 CIIFELYLGITLMARKTKTKYFY---HGKLDWDEKGTAGRYVRENCKPL  347 (351)
Q Consensus       302 ~~l~~l~tG~~pf~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~  347 (351)
                      |++|+|++|..||.+.+..+.+.   ++...+...  ....+++++++|
T Consensus       203 vilyeml~g~~Pf~~~~~~~~~~~i~~~~~~~~~~--~~~~~s~~~~~l  249 (277)
T d1phka_         203 VIMYTLLAGSPPFWHRKQMLMLRMIMSGNYQFGSP--EWDDYSDTVKDL  249 (277)
T ss_dssp             HHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTT--TGGGSCHHHHHH
T ss_pred             hhhhhhccCCCCCCCCCHHHHHHHHHhCCCCCCCc--ccccCCHHHHHH
Confidence            99999999999999888766543   344443332  222566666554

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.2e-41  Score=307.32  Aligned_cols=197  Identities=17%  Similarity=0.263  Sum_probs=163.7

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC----eE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG----HM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~----~~   73 (351)
                      +.||+|+||+||+|++..+++.||||++...    ....+.+.+|+++|+.++|+|      |+++++++...+    .+
T Consensus        13 ~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpn------iv~~~~~~~~~~~~~~~~   86 (277)
T d1o6ya_          13 EILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPA------IVAVYDTGEAETPAGPLP   86 (277)
T ss_dssp             EEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTT------BCCEEEEEEEECSSSEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCC------CCcccceeeeccCCCceE
Confidence            6799999999999999999999999999653    233456889999999999888      999999998765    48


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ||||||| |++|.+++...+  .+++..++.++.|++.|                       |+|||++|++|||+||+|
T Consensus        87 ~lvmE~~~g~~L~~~~~~~~--~l~~~~~~~i~~qi~~a-----------------------l~~lH~~~iiHrDiKP~N  141 (277)
T d1o6ya_          87 YIVMEYVDGVTLRDIVHTEG--PMTPKRAIEVIADACQA-----------------------LNFSHQNGIIHRDVKPAN  141 (277)
T ss_dssp             EEEEECCCEEEHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGG
T ss_pred             EEEEECCCCCEehhhhcccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHhCCccCccccCcc
Confidence            9999999 899999988775  57888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       142 Ill~----------------------------------------------------------------------------  145 (277)
T d1o6ya_         142 IMIS----------------------------------------------------------------------------  145 (277)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             cccC----------------------------------------------------------------------------
Confidence            9987                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceec------cccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD------EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                         ....++++|||.+....      ......+||+.|+|||++.+..++.++||||+||++|+
T Consensus       146 -------------------~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DiwSlGvilye  206 (277)
T d1o6ya_         146 -------------------ATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYE  206 (277)
T ss_dssp             -------------------TTSCEEECCCTTCEECC----------------TTCCHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             -------------------ccccceeehhhhhhhhccccccccccccccCcccccCHHHHcCCCCCcceecccchHHHHH
Confidence                               23568899999875421      23345689999999999998899999999999999999


Q ss_pred             eccccccccccCCCceee
Q psy2006         307 LYLGITLMARKTKTKYFY  324 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~~~  324 (351)
                      |+||.+||.+.+..+.+.
T Consensus       207 lltG~~Pf~~~~~~~~~~  224 (277)
T d1o6ya_         207 VLTGEPPFTGDSPVSVAY  224 (277)
T ss_dssp             HHHSSCSCCCSSHHHHHH
T ss_pred             HHhCCCCCCCcCHHHHHH
Confidence            999999999888776653

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-41  Score=309.02  Aligned_cols=198  Identities=22%  Similarity=0.343  Sum_probs=162.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhh------hhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEK------YREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~------~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      |++||+|+||+||+|+++.+++.||||+++....      ..+.+.+|+++|+.++|+|      |++++++|..++++|
T Consensus         3 l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpn------Iv~~~~~~~~~~~~~   76 (299)
T d1ua2a_           3 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPN------IIGLLDAFGHKSNIS   76 (299)
T ss_dssp             EEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTT------BCCEEEEECCTTCCE
T ss_pred             ceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCC------EeEEEeeeccCCcee
Confidence            5789999999999999999999999999975321      1345789999999999888      999999999999999


Q ss_pred             EEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          75 IAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        75 lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      |||||+.+.+...+.... ..+++..++.++.|++.|                       |+|||++|++|||+||+||.
T Consensus        77 ivmE~~~~~~~~~~~~~~-~~l~~~~~~~~~~qil~a-----------------------L~~lH~~~iiHrDiKp~NIl  132 (299)
T d1ua2a_          77 LVFDFMETDLEVIIKDNS-LVLTPSHIKAYMLMTLQG-----------------------LEYLHQHWILHRDLKPNNLL  132 (299)
T ss_dssp             EEEECCSEEHHHHHTTCC-SSCCSSHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGGGEE
T ss_pred             ehhhhhcchHHhhhhhcc-cCCCHHHHHHHHHHHHHH-----------------------HHHhhccceecccCCcceEE
Confidence            999999544444444332 367888888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      +.                                                                              
T Consensus       133 i~------------------------------------------------------------------------------  134 (299)
T d1ua2a_         133 LD------------------------------------------------------------------------------  134 (299)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             ec------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccc
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG  310 (351)
                                       ..+.+||+|||++.....   .....+||+.|+|||++.+. .++.++||||+||++|+|+||
T Consensus       135 -----------------~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g  197 (299)
T d1ua2a_         135 -----------------ENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLR  197 (299)
T ss_dssp             -----------------TTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHS
T ss_pred             -----------------CCCccccccCccccccCCCcccccceecChhhccHHHHccCCCCChhhhhhhcchHHHHHHhC
Confidence                             235789999999865332   33456899999999998754 579999999999999999999


Q ss_pred             cccccccCCCcee
Q psy2006         311 ITLMARKTKTKYF  323 (351)
Q Consensus       311 ~~pf~~~~~~~~~  323 (351)
                      .+||.+.+..+.+
T Consensus       198 ~~pf~~~~~~~~l  210 (299)
T d1ua2a_         198 VPFLPGDSDLDQL  210 (299)
T ss_dssp             SCSSCCSSHHHHH
T ss_pred             cCCCCCCCHHHHH
Confidence            9999988766543

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-41  Score=305.51  Aligned_cols=199  Identities=23%  Similarity=0.335  Sum_probs=170.7

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||+|+||+||+|+++.+++.||||++....   ...+.+.+|+++|++++|+|      |++++++|..++++|+||
T Consensus         7 ~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~------Iv~~~~~~~~~~~~~iv~   80 (298)
T d1gz8a_           7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPN------IVKLLDVIHTENKLYLVF   80 (298)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTT------BCCEEEEEEETTEEEEEE
T ss_pred             ccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCc------EEEeccccccccceeEEE
Confidence            468999999999999999999999999996542   23567889999999999888      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      ||+++++.+++.......+++..++.++.|++.|                       |+|||++||+|||+||+||.+. 
T Consensus        81 e~~~~~~~~~~~~~~~~~l~e~~~~~~~~qil~~-----------------------L~yLH~~~IiHrDiKpeNIl~~-  136 (298)
T d1gz8a_          81 EFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQG-----------------------LAFCHSHRVLHRDLKPQNLLIN-  136 (298)
T ss_dssp             ECCSEEHHHHHHHTTTTCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEEC-
T ss_pred             eecCCchhhhhhhhcccCCCHHHHHHHHHHHHHH-----------------------HHHhhcCCEEccccCchheeec-
Confidence            9998888888877766678888899888888888                       9999999999999999999876 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       137 --------------------------------------------------------------------------------  136 (298)
T d1gz8a_         137 --------------------------------------------------------------------------------  136 (298)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceec---cccccccccceeeCceeeecCCC-CCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDD---EHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~---~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ....+||+|||.+....   .......||+.|+|||++....+ +.++|+||+||++|+|++|..|
T Consensus       137 --------------~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~~~~~DiwSlGvily~m~~G~~P  202 (298)
T d1gz8a_         137 --------------TEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRRAL  202 (298)
T ss_dssp             --------------TTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             --------------ccCcceeccCCcceeccCCcccceeecccceeeehhhhccccCCCccccccccchhhhHHhhCCCC
Confidence                          23578999999986532   33445689999999999877665 7899999999999999999999


Q ss_pred             ccccCCCcee
Q psy2006         314 MARKTKTKYF  323 (351)
Q Consensus       314 f~~~~~~~~~  323 (351)
                      |.+.+..+.+
T Consensus       203 f~~~~~~~~~  212 (298)
T d1gz8a_         203 FPGDSEIDQL  212 (298)
T ss_dssp             CCCSSHHHHH
T ss_pred             CCCCCHHHHH
Confidence            9887765543

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-41  Score=301.67  Aligned_cols=194  Identities=18%  Similarity=0.250  Sum_probs=159.5

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      .++||+|+||+||+|+.   +..||||+++..   ....+.+.+|+.+|++++|+|      |+++++++. .+.++|||
T Consensus        13 ~~~lG~G~fg~Vy~~~~---~~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~Hpn------Iv~~~~~~~-~~~~~lv~   82 (276)
T d1uwha_          13 GQRIGSGSFGTVYKGKW---HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN------ILLFMGYST-APQLAIVT   82 (276)
T ss_dssp             CSEEEECSSCEEEEEES---SSEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTT------BCCEEEEEC-SSSCEEEE
T ss_pred             EEEEeeCCCcEEEEEEE---CCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCC------EeeeeEEEe-ccEEEEEE
Confidence            36799999999999974   346999999643   334567889999999999888      999999764 56789999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||| +|+|.+++.... ..+++..+..++.|++.|                       |+|||+++|+|||+|+.||.|.
T Consensus        83 Ey~~~g~L~~~l~~~~-~~~~~~~~~~i~~qi~~g-----------------------l~yLH~~~ivHrDlKp~NiLl~  138 (276)
T d1uwha_          83 QWCEGSSLYHHLHIIE-TKFEMIKLIDIARQTAQG-----------------------MDYLHAKSIIHRDLKSNNIFLH  138 (276)
T ss_dssp             ECCCEEEHHHHHHTSC-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEEE
T ss_pred             ecCCCCCHHHHHhhcc-CCCCHHHHHHHHHHHHHH-----------------------HHHHhcCCEeccccCHHHEEEc
Confidence            999 899999998764 368888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (276)
T d1uwha_         139 --------------------------------------------------------------------------------  138 (276)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeec---CCCCCccceeeeeeeeEeec
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILE---LGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~---~~~~~~~DiwslG~~l~~l~  308 (351)
                                     ....+||+|||++.....     ......||+.|+|||++.+   .+++.++|||||||++|+|+
T Consensus       139 ---------------~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~  203 (276)
T d1uwha_         139 ---------------EDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELM  203 (276)
T ss_dssp             ---------------TTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             ---------------CCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCCCchhhhhhhHHHHHHHH
Confidence                           245789999999875322     2345689999999999864   35788999999999999999


Q ss_pred             cccccccccCCCcee
Q psy2006         309 LGITLMARKTKTKYF  323 (351)
Q Consensus       309 tG~~pf~~~~~~~~~  323 (351)
                      ||..||.+.+..+.+
T Consensus       204 tg~~Pf~~~~~~~~~  218 (276)
T d1uwha_         204 TGQLPYSNINNRDQI  218 (276)
T ss_dssp             HSSCTTTTCCCHHHH
T ss_pred             HCCCCCCCCChHHHH
Confidence            999999987765543

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-40  Score=297.99  Aligned_cols=196  Identities=16%  Similarity=0.235  Sum_probs=160.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|++. +++.||||++.......+.+.+|++++++++|+|      |+++++++..++.+++||||| 
T Consensus        11 ~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~E~~~l~~l~Hpn------Iv~~~g~~~~~~~~~lv~E~~~   83 (263)
T d1sm2a_          11 QEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAMSEEDFIEEAEVMMKLSHPK------LVQLYGVCLEQAPICLVFEFME   83 (263)
T ss_dssp             EEEECCSSCCEEEEEET-TTEEEEEEECCSSSSCHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSCEEEEECCT
T ss_pred             EEEeeCCCeEEEEEEEC-CCCEEEEEEECCCcCcHHHHHHHHHHHHhcCCCC------cccccceeccCCceEEEEEecC
Confidence            67999999999999974 6788999999876666678999999999999888      999999999999999999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +|+|.+++.... ..+++..+..++.|++.|                       |+|||+++++|||+|+.|+.+.    
T Consensus        84 ~g~L~~~l~~~~-~~~~~~~~~~i~~qia~g-----------------------l~~lH~~~iiHrDlKp~Nill~----  135 (263)
T d1sm2a_          84 HGCLSDYLRTQR-GLFAAETLLGMCLDVCEG-----------------------MAYLEEACVIHRDLAARNCLVG----  135 (263)
T ss_dssp             TCBHHHHHHTTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCTTCSGGGEEEC----
T ss_pred             CCcHHHHhhccc-cCCCHHHHHHHHHHHHHH-----------------------HHhhhccceeecccchhheeec----
Confidence            999999987764 357888888888888888                       9999999999999999999876    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (263)
T d1sm2a_         136 --------------------------------------------------------------------------------  135 (263)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-cccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~  315 (351)
                                 ..+.+||+|||+++....    ......||+.|+|||++.+..++.++|||||||++||++| |.+||.
T Consensus       136 -----------~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~  204 (263)
T d1sm2a_         136 -----------ENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYE  204 (263)
T ss_dssp             -----------GGGCEEECSCC------------------CTTSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             -----------CCCCeEecccchheeccCCCceeecceecCcccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCC
Confidence                       246799999999875322    2234678899999999999999999999999999999998 567776


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      ..+..+++
T Consensus       205 ~~~~~~~~  212 (263)
T d1sm2a_         205 NRSNSEVV  212 (263)
T ss_dssp             SCCHHHHH
T ss_pred             CCCHHHHH
Confidence            66655554

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-40  Score=298.50  Aligned_cols=195  Identities=19%  Similarity=0.244  Sum_probs=164.2

Q ss_pred             cccCcccceEEEEEEee--cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEe
Q psy2006           3 SLNCVASNHVCTNVVYE--VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFE   78 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~--~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E   78 (351)
                      +||+|+||+||+|.++.  ++..||||+++..  ....+.+.+|+++|++++|+|      |+++++++.. +.+|||||
T Consensus        16 ~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~l~g~~~~-~~~~lvmE   88 (285)
T d1u59a_          16 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPY------IVRLIGVCQA-EALMLVME   88 (285)
T ss_dssp             EEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTT------BCCEEEEEES-SSEEEEEE
T ss_pred             EEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCC------EeeEeeeecc-CeEEEEEE
Confidence            59999999999998764  4558999999753  344567889999999999888      9999999865 56899999


Q ss_pred             cc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          79 IL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        79 ~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      || +|+|.+++...+ ..+++..+..++.|++.|                       |+|||+++++|||+|+.|+.|. 
T Consensus        89 ~~~~g~L~~~l~~~~-~~l~~~~~~~i~~qi~~g-----------------------L~ylH~~~iiHrDlKp~Nill~-  143 (285)
T d1u59a_          89 MAGGGPLHKFLVGKR-EEIPVSNVAELLHQVSMG-----------------------MKYLEEKNFVHRDLAARNVLLV-  143 (285)
T ss_dssp             CCTTEEHHHHHTTCT-TTSCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEE-
T ss_pred             eCCCCcHHHHhhccc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCeecCcCchhheeec-
Confidence            99 889999986654 367888888888888888                       9999999999999999999987 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (285)
T d1u59a_         144 --------------------------------------------------------------------------------  143 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-c
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-G  310 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G  310 (351)
                                    ....+||+|||+++....      ......||+.|+|||++.+..++.++|||||||++||++| |
T Consensus       144 --------------~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G  209 (285)
T d1u59a_         144 --------------NRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYG  209 (285)
T ss_dssp             --------------ETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTS
T ss_pred             --------------cCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCCCccchhhcchHHHHHHHhCC
Confidence                          245799999999875322      2234568899999999998999999999999999999987 9


Q ss_pred             cccccccCCCcee
Q psy2006         311 ITLMARKTKTKYF  323 (351)
Q Consensus       311 ~~pf~~~~~~~~~  323 (351)
                      ..||.+.+..+++
T Consensus       210 ~~Pf~~~~~~~~~  222 (285)
T d1u59a_         210 QKPYKKMKGPEVM  222 (285)
T ss_dssp             CCTTTTCCTHHHH
T ss_pred             CCCCCCCCHHHHH
Confidence            9999988776654

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-40  Score=298.08  Aligned_cols=195  Identities=18%  Similarity=0.224  Sum_probs=162.1

Q ss_pred             ccccCcccceEEEEEEee--cCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYE--VDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~--~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||+|+||+||+|.++.  +++.||||+++...   ...+.+.+|+++|++++|+|      |+++++++.. +..+||
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~Hpn------Iv~~~g~~~~-~~~~lv   85 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPY------IVRMIGICEA-ESWMLV   85 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTT------BCCEEEEEES-SSEEEE
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCC------CceEEEEecc-CCEEEE
Confidence            369999999999998654  45789999996532   33467889999999999888      9999999865 567899


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||| +|+|.++++...  .+++..+..++.|++.|                       |+|||+++++|||+|+.|+.|
T Consensus        86 mE~~~~g~L~~~l~~~~--~l~~~~~~~i~~qi~~g-----------------------l~ylH~~~iiHrDlKp~Nill  140 (277)
T d1xbba_          86 MEMAELGPLNKYLQQNR--HVKDKNIIELVHQVSMG-----------------------MKYLEESNFVHRDLAARNVLL  140 (277)
T ss_dssp             EECCTTEEHHHHHHHCT--TCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEE
T ss_pred             EEcCCCCcHHHHHhhcc--CCCHHHHHHHHHHHHHH-----------------------HhhHHhCCcccCCCcchhhcc
Confidence            9999 899999998765  57888888888888888                       999999999999999999998


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       141 ~-------------------------------------------------------------------------------  141 (277)
T d1xbba_         141 V-------------------------------------------------------------------------------  141 (277)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            7                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                      ..+.+||+|||+++....      ......||+.|+|||++.+..++.++|||||||++||++|
T Consensus       142 ----------------~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt  205 (277)
T d1xbba_         142 ----------------TQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFS  205 (277)
T ss_dssp             ----------------ETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHT
T ss_pred             ----------------ccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCCchhhhccchhhhhHHhh
Confidence                            245789999999875321      1234578899999999999999999999999999999997


Q ss_pred             -ccccccccCCCcee
Q psy2006         310 -GITLMARKTKTKYF  323 (351)
Q Consensus       310 -G~~pf~~~~~~~~~  323 (351)
                       |..||.+.+..++.
T Consensus       206 ~g~~Pf~~~~~~~~~  220 (277)
T d1xbba_         206 YGQKPYRGMKGSEVT  220 (277)
T ss_dssp             TTCCSSTTCCHHHHH
T ss_pred             CCCCCCCCCCHHHHH
Confidence             99999988766654

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-40  Score=303.23  Aligned_cols=197  Identities=19%  Similarity=0.226  Sum_probs=158.3

Q ss_pred             ccccCcccceEEEEEEeecCc---EEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS---VVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~---~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||+|+||+||+|.++.+++   .||||.+...  ....+.+.+|+++|++++|+|      ||++++++..++.+++|
T Consensus        32 ~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~Hpn------Iv~l~g~~~~~~~~~iv  105 (299)
T d1jpaa_          32 QVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPN------VIHLEGVVTKSTPVMII  105 (299)
T ss_dssp             EEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTT------BCCEEEEECSSSSCEEE
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCC------CccEEEEEeeCCEEEEE
Confidence            579999999999999876654   6899998643  344567899999999999888      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||| +|+|.+++.... ..+++..+..++.|++.|                       |.|||+++++|||+|+.||.|
T Consensus       106 ~Ey~~~g~L~~~~~~~~-~~l~~~~~~~i~~qia~g-----------------------l~yLH~~~iiHrDlKp~NILl  161 (299)
T d1jpaa_         106 TEFMENGSLDSFLRQND-GQFTVIQLVGMLRGIAAG-----------------------MKYLADMNYVHRDLAARNILV  161 (299)
T ss_dssp             EECCTTEEHHHHHHTTT-TCSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEE
T ss_pred             EEecCCCcceeeecccc-CCCCHHHHHHHHHHHHHH-----------------------HHHHhhCCCccCccccceEEE
Confidence            9999 899999887754 357888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       162 ~-------------------------------------------------------------------------------  162 (299)
T d1jpaa_         162 N-------------------------------------------------------------------------------  162 (299)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceeccc--------cccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH--------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~--------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                      ..+.+||+|||+++.....        .....||+.|+|||.+.+..++.++|||||||++|||
T Consensus       163 ----------------~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el  226 (299)
T d1jpaa_         163 ----------------SNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEV  226 (299)
T ss_dssp             ----------------TTCCEEECCC-----------------------CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHH
T ss_pred             ----------------CCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcCCCCcccccccchHHHHHH
Confidence                            2457999999998753211        1124578899999999989999999999999999999


Q ss_pred             cc-ccccccccCCCcee
Q psy2006         308 YL-GITLMARKTKTKYF  323 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~~  323 (351)
                      +| |..||.+.+..+++
T Consensus       227 ~t~g~~Pf~~~~~~~~~  243 (299)
T d1jpaa_         227 MSYGERPYWDMTNQDVI  243 (299)
T ss_dssp             HTTSCCTTTTCCHHHHH
T ss_pred             HhCCCCCCCCCCHHHHH
Confidence            98 89999988776654

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.4e-40  Score=301.41  Aligned_cols=220  Identities=19%  Similarity=0.311  Sum_probs=165.1

Q ss_pred             ccccCcccceEEEEEEeecCc-----EEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDS-----VVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~-----~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      ++||+|+||+||+|+++.+++     .||+|++...  ......+.+|+.+|+++ +|+|      ||+++++|...+++
T Consensus        43 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~Hpn------Iv~l~~~~~~~~~~  116 (325)
T d1rjba_          43 KVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHEN------IVNLLGACTLSGPI  116 (325)
T ss_dssp             EEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSC
T ss_pred             eEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCc------EeEEEEEEeeCCeE
Confidence            579999999999999876554     7999999643  33445778999999998 6777      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ||||||| +|+|.++++.... .+++....-...+.+. .......+++..+..++.|++.||.|||+++|+|||+||.|
T Consensus       117 ~lv~Ey~~~g~L~~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~N  194 (325)
T d1rjba_         117 YLIFEYCCYGDLLNYLRSKRE-KFSEDEIEYENQKRLE-EEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARN  194 (325)
T ss_dssp             EEEEECCTTCBHHHHHHTTTT-CC----------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGG
T ss_pred             EEEEEcCCCCcHHHHHHhccC-CCcchhhhhccccccc-cccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhc
Confidence            9999999 9999999987642 2232221111111110 11112246666777777777777999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+.                                                                            
T Consensus       195 ill~----------------------------------------------------------------------------  198 (325)
T d1rjba_         195 VLVT----------------------------------------------------------------------------  198 (325)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            9876                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccc-----cccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~-----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                         ....+||+|||+++.....     .....||+.|+|||++.+..++.++|||||||++|+|
T Consensus       199 -------------------~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~em  259 (325)
T d1rjba_         199 -------------------HGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEI  259 (325)
T ss_dssp             -------------------TTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             -------------------cCCeEEEeeccccccccCCCceeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHH
Confidence                               2457999999998763322     2346689999999999999999999999999999999


Q ss_pred             cc-ccccccccCCCceee
Q psy2006         308 YL-GITLMARKTKTKYFY  324 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~~~  324 (351)
                      +| |.+||.+.+..+.+.
T Consensus       260 lt~g~~Pf~~~~~~~~~~  277 (325)
T d1rjba_         260 FSLGVNPYPGIPVDANFY  277 (325)
T ss_dssp             TTTSCCSSTTCCCSHHHH
T ss_pred             HhCCCCCCCCCCHHHHHH
Confidence            97 999999887766543

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.9e-40  Score=292.51  Aligned_cols=198  Identities=17%  Similarity=0.227  Sum_probs=171.1

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL   80 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~   80 (351)
                      +++||+|+||+||+|++ .+++.||||++++.....+.+.+|++++++++|+|      |+++++++..++.+++||||+
T Consensus         9 ~~~iG~G~fg~Vy~~~~-~~~~~vAvK~l~~~~~~~~~~~~Ev~~~~~l~Hpn------Iv~~~g~~~~~~~~~iv~Ey~   81 (258)
T d1k2pa_           9 LKELGTGQFGVVKYGKW-RGQYDVAIKMIKEGSMSEDEFIEEAKVMMNLSHEK------LVQLYGVCTKQRPIFIITEYM   81 (258)
T ss_dssp             CCCCCEETTEEEEEEEE-TTTEEEEEEEEESSSSCHHHHHHHHHHHHTCCCTT------BCCEEEEECCSSSEEEEEECC
T ss_pred             eEEEecCCCeEEEEEEE-CCCCEEEEEEECcCcCCHHHHHHHHHHHHhcCCCc------eeeEEEEEeeCCceEEEEEcc
Confidence            47899999999999997 47889999999876666678999999999999888      999999999999999999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +|+|.+++.... ..+++..+..++.|++.|                       |.|||++|++|||+|++|+.+.   
T Consensus        82 ~~g~l~~~~~~~~-~~~~~~~~~~i~~qi~~g-----------------------l~~LH~~~iiH~dlk~~Nill~---  134 (258)
T d1k2pa_          82 ANGCLLNYLREMR-HRFQTQQLLEMCKDVCEA-----------------------MEYLESKQFLHRDLAARNCLVN---  134 (258)
T ss_dssp             TTEEHHHHHHSGG-GCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTBCCSCCSGGGEEEC---
T ss_pred             CCCcHHHhhhccc-cCCcHHHHHHHHHHHHHH-----------------------HHHHhhcCcccccccceeEEEc---
Confidence             899999977664 356777777888888777                       9999999999999999999876   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (258)
T d1k2pa_         135 --------------------------------------------------------------------------------  134 (258)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccc
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLM  314 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf  314 (351)
                                  ....+||+|||++.....    ......||+.|+|||.+.+..++.++|||||||++|+|+| |..||
T Consensus       135 ------------~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf  202 (258)
T d1k2pa_         135 ------------DQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPY  202 (258)
T ss_dssp             ------------TTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             ------------CCCcEEECcchhheeccCCCceeecccCCCCCcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCC
Confidence                        245789999999865322    1223568899999999999999999999999999999998 89999


Q ss_pred             cccCCCceee
Q psy2006         315 ARKTKTKYFY  324 (351)
Q Consensus       315 ~~~~~~~~~~  324 (351)
                      .+.+..++..
T Consensus       203 ~~~~~~~~~~  212 (258)
T d1k2pa_         203 ERFTNSETAE  212 (258)
T ss_dssp             TTSCHHHHHH
T ss_pred             CCCCHHHHHH
Confidence            9998777653

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-40  Score=298.09  Aligned_cols=196  Identities=19%  Similarity=0.239  Sum_probs=163.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|++ .+++.||||++.......+.+.+|+++|++++|+|      |+++++++. ++.++|||||| 
T Consensus        19 ~~iG~G~fg~Vy~~~~-~~~~~vAvK~~~~~~~~~~~~~~E~~~l~~l~Hpn------Iv~~~g~~~-~~~~~iv~Ey~~   90 (272)
T d1qpca_          19 ERLGAGQFGEVWMGYY-NGHTKVAVKSLKQGSMSPDAFLAEANLMKQLQHQR------LVRLYAVVT-QEPIYIITEYME   90 (272)
T ss_dssp             EEEEEETTEEEEEEEE-TTTEEEEEEEECTTSSCHHHHHHHHHHHHHCCCTT------BCCEEEEEC-SSSCEEEEECCT
T ss_pred             EEEecCCCcEEEEEEE-CCCCEEEEEEEccCcCCHHHHHHHHHHHHhCCCCC------EeEEEeeec-cCCeEEEEEeCC
Confidence            5799999999999996 46788999999876556678899999999999888      999999875 46789999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +|+|.+++.......+++..+..++.|++.|                       |.|||+++++|||+|+.||.|.    
T Consensus        91 ~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~g-----------------------l~~lH~~~ivHrDiKp~NIll~----  143 (272)
T d1qpca_          91 NGSLVDFLKTPSGIKLTINKLLDMAAQIAEG-----------------------MAFIEERNYIHRDLRAANILVS----  143 (272)
T ss_dssp             TCBHHHHTTSHHHHTCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGGEEEC----
T ss_pred             CCcHHHHHhhcCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCcccCccchhheeee----
Confidence            9999998876654467888888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       144 --------------------------------------------------------------------------------  143 (272)
T d1qpca_         144 --------------------------------------------------------------------------------  143 (272)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc-ccccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG-ITLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG-~~pf~  315 (351)
                                 ....+||+|||+++....    ......||+.|+|||++.+..++.++|||||||++|+|+|| .+||.
T Consensus       144 -----------~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~  212 (272)
T d1qpca_         144 -----------DTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYP  212 (272)
T ss_dssp             -----------TTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             -----------cccceeeccccceEEccCCccccccccCCcccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCC
Confidence                       245799999999976432    22346788999999999888899999999999999999995 55555


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      ..+..+++
T Consensus       213 ~~~~~~~~  220 (272)
T d1qpca_         213 GMTNPEVI  220 (272)
T ss_dssp             TCCHHHHH
T ss_pred             CCCHHHHH
Confidence            55544443

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-40  Score=295.11  Aligned_cols=194  Identities=21%  Similarity=0.340  Sum_probs=164.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-------hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-------KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +.||+|+||+||+|+++.+++.||||++.+..       .....+.+|+.+|+++++.|+|    |++++++|..+++++
T Consensus        10 ~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~n----Iv~~~~~~~~~~~~~   85 (273)
T d1xwsa_          10 PLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG----VIRLLDWFERPDSFV   85 (273)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCS----BCCEEEEEECSSEEE
T ss_pred             EEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCC----ccEEEEEEeeCCeEE
Confidence            57999999999999999999999999997532       1123456899999999855555    999999999999999


Q ss_pred             EEEecc-C-CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          75 IAFEIL-G-LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        75 lV~E~~-g-~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +||||+ + +++.+++....  .+++..++.++.|++.|                       |+|||++|++|||+||+|
T Consensus        86 lv~e~~~~~~~l~~~~~~~~--~l~e~~~~~~~~qi~~a-----------------------l~~lH~~~iiHrDiKp~N  140 (273)
T d1xwsa_          86 LILERPEPVQDLFDFITERG--ALQEELARSFFWQVLEA-----------------------VRHCHNCGVLHRDIKDEN  140 (273)
T ss_dssp             EEEECCSSEEEHHHHHHHHC--SCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCSGGG
T ss_pred             EEEEeccCcchHHHHHhccC--CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCccccCcccc
Confidence            999999 4 58888887765  57888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.+..                                                                           
T Consensus       141 Ill~~---------------------------------------------------------------------------  145 (273)
T d1xwsa_         141 ILIDL---------------------------------------------------------------------------  145 (273)
T ss_dssp             EEEET---------------------------------------------------------------------------
T ss_pred             eEEec---------------------------------------------------------------------------
Confidence            98861                                                                           


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceec-cccccccccceeeCceeeecCCC-CCccceeeeeeeeEeeccc
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYRAPEVILELGW-AQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~-~~~~DiwslG~~l~~l~tG  310 (351)
                                         ....+||+|||++.... ....+..||+.|+|||++.+..+ +.++||||+||++|+|+||
T Consensus       146 -------------------~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~~DiwSlGvilyell~g  206 (273)
T d1xwsa_         146 -------------------NRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCG  206 (273)
T ss_dssp             -------------------TTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHS
T ss_pred             -------------------CCCeEEECccccceecccccccccccCCCcCCHHHHcCCCCCCcccccccceeeehhHhhC
Confidence                               13579999999997643 33456789999999999988776 6778999999999999999


Q ss_pred             cccccccC
Q psy2006         311 ITLMARKT  318 (351)
Q Consensus       311 ~~pf~~~~  318 (351)
                      ..||.+.+
T Consensus       207 ~~Pf~~~~  214 (273)
T d1xwsa_         207 DIPFEHDE  214 (273)
T ss_dssp             SCSCCSHH
T ss_pred             CCCCCCch
Confidence            99997654

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-39  Score=302.92  Aligned_cols=195  Identities=25%  Similarity=0.466  Sum_probs=164.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------   71 (351)
                      +++||+|+||+||+|+++.+++.||||++++.   ....+.+.+|+++|+.++|+|      ||+++++|...+      
T Consensus        23 i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpn------iv~l~~~~~~~~~~~~~~   96 (346)
T d1cm8a_          23 LQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHEN------VIGLLDVFTPDETLDDFT   96 (346)
T ss_dssp             EEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTT------BCCCSEEECSCSSTTTCC
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCC------eeEEEEEeccCccccccc
Confidence            36899999999999999999999999999753   234567889999999999888      999999998765      


Q ss_pred             eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          72 HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        72 ~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      ++|||||||+.+|..+++..   ++++..++.++.|++.|                       |+|||++||+|||+||+
T Consensus        97 ~~~lv~e~~~~~l~~~~~~~---~l~~~~~~~~~~qi~~a-----------------------L~~LH~~~IiHrDiKp~  150 (346)
T d1cm8a_          97 DFYLVMPFMGTDLGKLMKHE---KLGEDRIQFLVYQMLKG-----------------------LRYIHAAGIIHRDLKPG  150 (346)
T ss_dssp             CCEEEEECCSEEHHHHHHHC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGG
T ss_pred             eEEEEEecccccHHHHHHhc---cccHHHHHHHHHHHHHH-----------------------HHHHHhCCCcccccCcc
Confidence            68999999999999887764   47888888888888888                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.+.                                                                           
T Consensus       151 NIL~~---------------------------------------------------------------------------  155 (346)
T d1cm8a_         151 NLAVN---------------------------------------------------------------------------  155 (346)
T ss_dssp             GEEEC---------------------------------------------------------------------------
T ss_pred             hhhcc---------------------------------------------------------------------------
Confidence            99886                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecC-CCCCccceeeeeeeeEeeccc
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG  310 (351)
                                          ....+|++|||++...........||+.|+|||++.+. .++.++|+||+||++|+|++|
T Consensus       156 --------------------~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlGvil~ell~g  215 (346)
T d1cm8a_         156 --------------------EDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITG  215 (346)
T ss_dssp             --------------------TTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHS
T ss_pred             --------------------cccccccccccceeccCCccccccccccccCHHHHcCCCCCCccchhhcchHHHHHHHHC
Confidence                                24578999999998877777888999999999999874 468999999999999999999


Q ss_pred             cccccccCCCce
Q psy2006         311 ITLMARKTKTKY  322 (351)
Q Consensus       311 ~~pf~~~~~~~~  322 (351)
                      .+||.+.+..+.
T Consensus       216 ~~pf~~~~~~~~  227 (346)
T d1cm8a_         216 KTLFKGSDHLDQ  227 (346)
T ss_dssp             SCSSCCSSHHHH
T ss_pred             cCCCCCCChHHH
Confidence            999988775554

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-39  Score=297.03  Aligned_cols=199  Identities=23%  Similarity=0.384  Sum_probs=164.5

Q ss_pred             CccccCcccceEEEEEEeec-CcEEEEEEecch---hhhhHHHHHHHHHHHHh---CCCCCCCCcceeeeeeeEeeC---
Q psy2006           1 MCSLNCVASNHVCTNVVYEV-DSVVALKIIKNV---EKYREAARLEINALQKI---GEKDPNGRHLCVKMLDWFDYH---   70 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~-~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l---~h~~~~g~~~Iv~l~~~f~~~---   70 (351)
                      +++||+|+||+||+|++..+ ++.||||++...   ......+.+|+++|+.|   .|+|      |++++++|...   
T Consensus        12 ~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~Hpn------Iv~~~~~~~~~~~~   85 (305)
T d1blxa_          12 VAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPN------VVRLFDVCTVSRTD   85 (305)
T ss_dssp             EEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTT------BCCEEEEEEEEECS
T ss_pred             EEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCC------cceeeeeecccccc
Confidence            36899999999999999765 678999999643   22234567899998887   4555      99999999643   


Q ss_pred             --CeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccccc
Q psy2006          71 --GHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRV  148 (351)
Q Consensus        71 --~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~  148 (351)
                        .+++++|||+.+++..+........+++..++.++.|++.|                       |+|||+++|+|||+
T Consensus        86 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~a-----------------------L~yLH~~~ivHrDi  142 (305)
T d1blxa_          86 RETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRG-----------------------LDFLHSHRVVHRDL  142 (305)
T ss_dssp             SEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCC
T ss_pred             cCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHH-----------------------HHHHHhCCEEecCC
Confidence              38999999996666666665555678888888888888888                       99999999999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      ||.||.+.                                                                        
T Consensus       143 Kp~NILi~------------------------------------------------------------------------  150 (305)
T d1blxa_         143 KPQNILVT------------------------------------------------------------------------  150 (305)
T ss_dssp             CGGGEEEC------------------------------------------------------------------------
T ss_pred             CccEEEEc------------------------------------------------------------------------
Confidence            99999876                                                                        


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                             ..+.+||+|||++...  ........||+.|+|||++.+.+++.++||||+||++|+
T Consensus       151 -----------------------~~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y~~~~DiwSlG~il~e  207 (305)
T d1blxa_         151 -----------------------SSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAE  207 (305)
T ss_dssp             -----------------------TTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHH
T ss_pred             -----------------------CCCCeeecchhhhhhhcccccCCCcccChhhcCcchhcCCCCChhehhhchHHHHHH
Confidence                                   2357899999998753  334456889999999999999999999999999999999


Q ss_pred             eccccccccccCCCcee
Q psy2006         307 LYLGITLMARKTKTKYF  323 (351)
Q Consensus       307 l~tG~~pf~~~~~~~~~  323 (351)
                      |+||.+||.+.+..+.+
T Consensus       208 ll~g~~pf~~~~~~~~~  224 (305)
T d1blxa_         208 MFRRKPLFRGSSDVDQL  224 (305)
T ss_dssp             HHHSSCSCCCSSHHHHH
T ss_pred             HHHCCCCCCCCCHHHHH
Confidence            99999999988765543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.1e-39  Score=298.48  Aligned_cols=195  Identities=21%  Similarity=0.321  Sum_probs=162.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC------CeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH------GHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~------~~~~l   75 (351)
                      ++||+|+||+||+|+++.+++.||||++....   ....+|+++|++++|+|      |++++++|...      .++||
T Consensus        26 k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~---~~~~~Ei~il~~l~h~n------iv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          26 KVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK---RFKNRELQIMRKLDHCN------IVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEETTEEEEEEEETTTCCEEEEEEEECCS---SSCCHHHHHHHHCCCTT------BCCEEEEEEEC--CCSCCEEEE
T ss_pred             eEEeeCcCeEEEEEEECCCCCEEEEEEECccc---hHHHHHHHHHHhcCCCC------CCcEEEEEEecCccCCceEEEE
Confidence            57999999999999999999999999997643   22347999999999888      99999999643      37999


Q ss_pred             EEeccCCCHHHHHHhc--CCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          76 AFEILGLSVFDFLKEN--NYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        76 V~E~~g~sL~~~l~~~--~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |||||++++.+.+...  ....+++..++.++.|++.|                       |+|||++||+|||+|++||
T Consensus        97 v~Ey~~~~~~~~l~~~~~~~~~l~~~~~~~i~~qil~a-----------------------L~yLH~~~IiHrDiKp~NI  153 (350)
T d1q5ka_          97 VLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQLFRS-----------------------LAYIHSFGICHRDIKPQNL  153 (350)
T ss_dssp             EEECCSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECCCCCGGGE
T ss_pred             EEeccCCccHHHHHhhhhccCCCCHHHHHHHHHHHHHH-----------------------HHHHHhcCCcccCCCcceE
Confidence            9999977766665432  33468888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+..                                                                            
T Consensus       154 Ll~~----------------------------------------------------------------------------  157 (350)
T d1q5ka_         154 LLDP----------------------------------------------------------------------------  157 (350)
T ss_dssp             EECT----------------------------------------------------------------------------
T ss_pred             EEec----------------------------------------------------------------------------
Confidence            8861                                                                            


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCccee--ccccccccccceeeCceeeec-CCCCCccceeeeeeeeEeeccc
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~--~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                        ....+||+|||++...  .....+.+||+.|+|||.+.+ ..++.++||||+||++|+|++|
T Consensus       158 ------------------~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DIwSlG~il~el~~g  219 (350)
T d1q5ka_         158 ------------------DTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLG  219 (350)
T ss_dssp             ------------------TTCCEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHT
T ss_pred             ------------------CCCceeEecccchhhccCCcccccccccccccChHHhhcccCCCcceeecccceEEEehhhC
Confidence                              1246899999998763  334456789999999998876 4679999999999999999999


Q ss_pred             cccccccCCCce
Q psy2006         311 ITLMARKTKTKY  322 (351)
Q Consensus       311 ~~pf~~~~~~~~  322 (351)
                      .+||...+..+.
T Consensus       220 ~~pf~~~~~~~~  231 (350)
T d1q5ka_         220 QPIFPGDSGVDQ  231 (350)
T ss_dssp             SCSSCCSSHHHH
T ss_pred             CCCCCCCCHHHH
Confidence            999988775544

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=2.3e-38  Score=287.99  Aligned_cols=200  Identities=14%  Similarity=0.111  Sum_probs=167.9

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      ++||+|+||+||+|++..+++.||||++... ...+.+.+|+++++.|.|.+ +    |+.+++++...++.|+||||++
T Consensus        11 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~-~~~~~~~~e~~~~~~l~~~~-~----i~~~~~~~~~~~~~~~vme~~~   84 (293)
T d1csna_          11 RRIGEGSFGVIFEGTNLLNNQQVAIKFEPRR-SDAPQLRDEYRTYKLLAGCT-G----IPNVYYFGQEGLHNVLVIDLLG   84 (293)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEEEEECC-TTSCCHHHHHHHHHHTTTCT-T----CCCEEEEEEETTEEEEEEECCC
T ss_pred             EEEecCCCeEEEEEEECCCCCEEEEEEEccc-cCcHHHHHHHHHHHHhcCCC-C----CCEEEEEeecCCccEEEEEecC
Confidence            6799999999999999999999999998653 23456778999999998622 2    9999999999999999999999


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCc
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      ++|.++++... ..+++..+..++.|++.+                       |+|||++|++|||+||.|+.+..-.  
T Consensus        85 ~~l~~~~~~~~-~~~~~~~~~~i~~q~~~~-----------------------l~~lH~~giiHrDiKp~Nili~~~~--  138 (293)
T d1csna_          85 PSLEDLLDLCG-RKFSVKTVAMAAKQMLAR-----------------------VQSIHEKSLVYRDIKPDNFLIGRPN--  138 (293)
T ss_dssp             CBHHHHHHHTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHTTTEECCCCCGGGEEECCSS--
T ss_pred             CCHHHHHHhhc-cchhhHHHHHHHHHHHHH-----------------------HHHHHHCCceeccCCccceeecCcc--
Confidence            99999987764 468888888888888888                       9999999999999999999986100  


Q ss_pred             ccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhc
Q psy2006         162 TFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (351)
                                                                                                      
T Consensus       139 --------------------------------------------------------------------------------  138 (293)
T d1csna_         139 --------------------------------------------------------------------------------  138 (293)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhhhccccceeeeccCCcceecc----------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                              ....+.++|+|||++.....          .....+||+.|+|||++.+.+++.++|+|||||++|+|+||.
T Consensus       139 --------~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~  210 (293)
T d1csna_         139 --------SKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGS  210 (293)
T ss_dssp             --------STTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             --------cccCCceEEcccceeEEcccCccccceeecccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCC
Confidence                    00235799999999975321          123467999999999999999999999999999999999999


Q ss_pred             ccccccCCCc
Q psy2006         312 TLMARKTKTK  321 (351)
Q Consensus       312 ~pf~~~~~~~  321 (351)
                      .||.+.+...
T Consensus       211 ~Pf~~~~~~~  220 (293)
T d1csna_         211 LPWQGLKAAT  220 (293)
T ss_dssp             CTTSSCCSCC
T ss_pred             CcCCCccchh
Confidence            9998765543

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-38  Score=292.51  Aligned_cols=194  Identities=24%  Similarity=0.440  Sum_probs=160.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC-----eE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG-----HM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~-----~~   73 (351)
                      +++||+|+||+||+|+++.+++.||||++.+.  ....+.+.+|+.+|+.++|+|      |+++++++....     ++
T Consensus        13 ~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~------iv~~~~~~~~~~~~~~~~~   86 (345)
T d1pmea_          13 LSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHEN------IIGINDIIRAPTIEQMKDV   86 (345)
T ss_dssp             EEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTT------BCCCCEEECCSSTTTCCCE
T ss_pred             EEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCC------CCcEEEEEeeccccccceE
Confidence            46899999999999999999999999999753  344567889999999999888      999999997654     57


Q ss_pred             EEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          74 CIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        74 ~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      |+++++++++|.+++...   ++++..++.++.|++.|                       |+|||++||+|||+||+||
T Consensus        87 ~l~~~~~~g~L~~~l~~~---~l~~~~i~~i~~qil~a-----------------------l~yLH~~~iiHRDIKp~NI  140 (345)
T d1pmea_          87 YLVTHLMGADLYKLLKTQ---HLSNDHICYFLYQILRG-----------------------LKYIHSANVLHRDLKPSNL  140 (345)
T ss_dssp             EEEEECCCEEHHHHHHHC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCCGGGE
T ss_pred             EEEEeecCCchhhhhhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHCCCcCCCCCcceE
Confidence            777777799999999764   47888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       141 Ll~-----------------------------------------------------------------------------  143 (345)
T d1pmea_         141 LLN-----------------------------------------------------------------------------  143 (345)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             EEC-----------------------------------------------------------------------------
Confidence            886                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeec-CCCCCccceeeeeeeeEe
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILE-LGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~-~~~~~~~DiwslG~~l~~  306 (351)
                                        ..+.+||+|||++.....      .....+||+.|+|||++.. ..++.++|+||+||++++
T Consensus       144 ------------------~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~~~DiwSlG~il~e  205 (345)
T d1pmea_         144 ------------------TTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAE  205 (345)
T ss_dssp             ------------------TTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTTBCSCSTHHHHHHHHHHHHH
T ss_pred             ------------------CCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhcCCCCCchhhhhccCceehH
Confidence                              235799999999875221      2345679999999999854 466899999999999999


Q ss_pred             eccccccccccCCCc
Q psy2006         307 LYLGITLMARKTKTK  321 (351)
Q Consensus       307 l~tG~~pf~~~~~~~  321 (351)
                      |++|..||.+.+..+
T Consensus       206 ml~g~~pf~~~~~~~  220 (345)
T d1pmea_         206 MLSNRPIFPGKHYLD  220 (345)
T ss_dssp             HHHSSCSCCCSSHHH
T ss_pred             HhhCCCCCCCCCHHH
Confidence            999999998776433

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-38  Score=284.60  Aligned_cols=197  Identities=19%  Similarity=0.253  Sum_probs=157.9

Q ss_pred             ccccCcccceEEEEEEeec---CcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEV---DSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~---~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      +.||+|+||+||+|++..+   +..||||+++..  ....+.+.+|+.+|++++|+|      |+++++++. ++++|+|
T Consensus        13 ~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~Hpn------Iv~l~~~~~-~~~~~iv   85 (273)
T d1mp8a_          13 RCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPH------IVKLIGVIT-ENPVWII   85 (273)
T ss_dssp             EEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTT------BCCEEEEEC-SSSCEEE
T ss_pred             EEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCC------EeeEEEEEe-cCeEEEE
Confidence            5799999999999998654   357999998643  344567889999999999888      999999996 5789999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +|+|.+++.... ..+++..++.++.|++.|                       |.|||+++++|||+|+.|+.+
T Consensus        86 ~E~~~~g~l~~~~~~~~-~~l~~~~~~~~~~qi~~g-----------------------l~ylH~~~iiHrDlKp~NIll  141 (273)
T d1mp8a_          86 MELCTLGELRSFLQVRK-YSLDLASLILYAYQLSTA-----------------------LAYLESKRFVHRDIAARNVLV  141 (273)
T ss_dssp             EECCTTEEHHHHHHHTT-TTSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEE
T ss_pred             EEeccCCcHHhhhhccC-CCCCHHHHHHHHHHHHHH-----------------------hhhhcccCeeccccchhheee
Confidence            9999 899999877654 467888888888888888                       999999999999999999988


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       142 ~-------------------------------------------------------------------------------  142 (273)
T d1mp8a_         142 S-------------------------------------------------------------------------------  142 (273)
T ss_dssp             E-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            7                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-c
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-G  310 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G  310 (351)
                                      ..+.+||+|||++.....    ......||+.|+|||++.+..++.++|||||||++|+|+| |
T Consensus       143 ----------------~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g  206 (273)
T d1mp8a_         143 ----------------SNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHG  206 (273)
T ss_dssp             ----------------ETTEEEECC-------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTS
T ss_pred             ----------------CCCcEEEccchhheeccCCcceeccceecCcccchhhHhccCCCCCccccccchHHHHHHHhcC
Confidence                            245799999999875322    2234678899999999999999999999999999999987 9


Q ss_pred             cccccccCCCceee
Q psy2006         311 ITLMARKTKTKYFY  324 (351)
Q Consensus       311 ~~pf~~~~~~~~~~  324 (351)
                      .+||.+.+..+++.
T Consensus       207 ~~P~~~~~~~~~~~  220 (273)
T d1mp8a_         207 VKPFQGVKNNDVIG  220 (273)
T ss_dssp             CCTTTTCCGGGHHH
T ss_pred             CCCCCCCCHHHHHH
Confidence            99999988877653

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-39  Score=289.51  Aligned_cols=196  Identities=21%  Similarity=0.205  Sum_probs=159.6

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      ++||+|+||+||+|+++ +++.||||++.......+.+.+|+.+|++++|+|      |+++++++.. +.+++||||+ 
T Consensus        23 ~~iG~G~fg~Vy~~~~~-~~~~vAiK~l~~~~~~~~~~~~E~~~l~~l~h~n------Iv~~~g~~~~-~~~~lv~Ey~~   94 (285)
T d1fmka3          23 VKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGTMSPEAFLQEAQVMKKLRHEK------LVQLYAVVSE-EPIYIVTEYMS   94 (285)
T ss_dssp             EEEEECSSCEEEEEEET-TTEEEEEEECCTTSSCHHHHHHHHHHHHHCCCTT------BCCEEEEECS-SSCEEEECCCT
T ss_pred             eEEeeCCCeEEEEEEEC-CCCEEEEEEECcccCCHHHHHHHHHHHHhcccCC------EeEEEEEEec-CCeEEEEEecC
Confidence            57999999999999985 4467999999876666678999999999999888      9999999854 5678999999 


Q ss_pred             CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCC
Q psy2006          81 GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGS  160 (351)
Q Consensus        81 g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~  160 (351)
                      +|+|..++.......+++..+..++.|++.|                       |.|||+.+++|||+|+.||.|.    
T Consensus        95 ~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~g-----------------------l~~LH~~~ivH~DlKp~NIll~----  147 (285)
T d1fmka3          95 KGSLLDFLKGETGKYLRLPQLVDMAAQIASG-----------------------MAYVERMNYVHRDLRAANILVG----  147 (285)
T ss_dssp             TCBHHHHHSHHHHTTCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEEC----
T ss_pred             CCchhhhhhhcccccchHHHHHHHHHHHHHH-----------------------HHHHhhhheecccccceEEEEC----
Confidence            8999999887644468888888888888888                       9999999999999999999886    


Q ss_pred             cccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhh
Q psy2006         161 ATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRIL  240 (351)
Q Consensus       161 s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  240 (351)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (285)
T d1fmka3         148 --------------------------------------------------------------------------------  147 (285)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccchhhhhhhccccceeeeccCCcceec----cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc-cccc
Q psy2006         241 SSVSSLVMRRVRRCDIRLIDFGSATFDD----EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI-TLMA  315 (351)
Q Consensus       241 ~~~~~~~~~~~~~~~vkl~dfg~~~~~~----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~-~pf~  315 (351)
                                 ....+||+|||+++...    .......||+.|+|||.+....++.++|||||||++|+|+||. +||.
T Consensus       148 -----------~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~  216 (285)
T d1fmka3         148 -----------ENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYP  216 (285)
T ss_dssp             -----------GGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSST
T ss_pred             -----------CCCcEEEcccchhhhccCCCceeeccccccccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCC
Confidence                       24579999999987532    1223467899999999999999999999999999999999955 4455


Q ss_pred             ccCCCcee
Q psy2006         316 RKTKTKYF  323 (351)
Q Consensus       316 ~~~~~~~~  323 (351)
                      ..+..+.+
T Consensus       217 ~~~~~~~~  224 (285)
T d1fmka3         217 GMVNREVL  224 (285)
T ss_dssp             TCCHHHHH
T ss_pred             CCCHHHHH
Confidence            55544444

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-38  Score=289.85  Aligned_cols=197  Identities=21%  Similarity=0.359  Sum_probs=160.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee--------
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY--------   69 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~--------   69 (351)
                      +++||+|+||+||+|+++.+|+.||||++....   .....+.+|+++|+.++|+|      |++++++|..        
T Consensus        15 ~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~n------ii~~~~~~~~~~~~~~~~   88 (318)
T d3blha1          15 LAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHEN------VVNLIEICRTKASPYNRC   88 (318)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTT------BCCEEEEEEC--------
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCC------ccceEeeeeccccccccc
Confidence            368999999999999999999999999986532   33466789999999999887      9999999865        


Q ss_pred             CCeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccC
Q psy2006          70 HGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVR  149 (351)
Q Consensus        70 ~~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k  149 (351)
                      .+++|+||||+++.+........ ..+++..++.++.|++.|                       |.|||++||+|||+|
T Consensus        89 ~~~~~iv~e~~~~~~~~~~~~~~-~~~~~~~~~~i~~qil~~-----------------------l~~lH~~~ivHrDlK  144 (318)
T d3blha1          89 KGSIYLVFDFCEHDLAGLLSNVL-VKFTLSEIKRVMQMLLNG-----------------------LYYIHRNKILHRDMK  144 (318)
T ss_dssp             --CEEEEEECCCEEHHHHHTCTT-CCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCC
T ss_pred             CceEEEEEeccCCCccchhhhcc-cccccHHHHHHHHHHHHH-----------------------HHHhccCCEEecCcC
Confidence            34799999999666666554443 468888888888888888                       999999999999999


Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhh
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~  229 (351)
                      +.||.+.                                                                         
T Consensus       145 p~NILl~-------------------------------------------------------------------------  151 (318)
T d3blha1         145 AANVLIT-------------------------------------------------------------------------  151 (318)
T ss_dssp             GGGEEEC-------------------------------------------------------------------------
T ss_pred             chheeec-------------------------------------------------------------------------
Confidence            9999876                                                                         


Q ss_pred             hcccchhhhhhccchhhhhhhccccceeeeccCCcceec-------cccccccccceeeCceeeecC-CCCCccceeeee
Q psy2006         230 VHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-------EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIG  301 (351)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG  301 (351)
                                            ..+.+|++|||++....       ......+||+.|+|||++.+. +++.++||||+|
T Consensus       152 ----------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~k~DiwSlG  209 (318)
T d3blha1         152 ----------------------RDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAG  209 (318)
T ss_dssp             ----------------------TTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCCHHHHTTCSSCCTHHHHHHHH
T ss_pred             ----------------------CCCcEEeeecceeeecccccccccccccceecCHHHhhHHHHcCCCCCCcHHHcccCC
Confidence                                  23578999999986422       223346799999999998765 689999999999


Q ss_pred             eeeEeeccccccccccCCCce
Q psy2006         302 CIIFELYLGITLMARKTKTKY  322 (351)
Q Consensus       302 ~~l~~l~tG~~pf~~~~~~~~  322 (351)
                      |++|+|++|.+||.+.+..+.
T Consensus       210 vil~el~~g~~pf~~~~~~~~  230 (318)
T d3blha1         210 CIMAEMWTRSPIMQGNTEQHQ  230 (318)
T ss_dssp             HHHHHHHHSSCSCCCSSHHHH
T ss_pred             ceeeeHhhCCCCCCCCCHHHH
Confidence            999999999999988775554

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-38  Score=282.95  Aligned_cols=197  Identities=18%  Similarity=0.183  Sum_probs=156.6

Q ss_pred             ccccCcccceEEEEEEeecC----cEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVD----SVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~----~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~l   75 (351)
                      +.||+|+||+||+|.++.++    ..||||++...  ......+.+|+++|++++|+|      ||++++++...+.+++
T Consensus        13 ~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~n------Iv~~~g~~~~~~~~~~   86 (283)
T d1mqba_          13 KVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHN------IIRLEGVISKYKPMMI   86 (283)
T ss_dssp             EEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTT------BCCEEEEECSSSSEEE
T ss_pred             eEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCC------EeeeeEEEecCCceEE
Confidence            56999999999999987654    47999999653  233456789999999999888      9999999999999999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||| ++++.+++.... ..+++..+..++.|++.|                       |+|||+++++|||+|++||.
T Consensus        87 v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~~i~~g-----------------------l~~lH~~~iiHrDlKp~NIL  142 (283)
T d1mqba_          87 ITEYMENGALDKFLREKD-GEFSVLQLVGMLRGIAAG-----------------------MKYLANMNYVHRDLAARNIL  142 (283)
T ss_dssp             EEECCTTEEHHHHHHHTT-TCSCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEE
T ss_pred             EEEecccCcchhhhhccc-ccccHHHHHHHHHHHHHh-----------------------hhhccccccccCccccceEE
Confidence            99999 888988877654 467888888888888888                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      |.                                                                              
T Consensus       143 l~------------------------------------------------------------------------------  144 (283)
T d1mqba_         143 VN------------------------------------------------------------------------------  144 (283)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             EC------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                       ....+||+|||+++....      ......||+.|+|||++.+..++.++|||||||++|||+
T Consensus       145 -----------------~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~  207 (283)
T d1mqba_         145 -----------------SNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVM  207 (283)
T ss_dssp             -----------------TTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCcccccccHHHHHHHH
Confidence                             245799999999875321      122356789999999999999999999999999999999


Q ss_pred             cc-cccccccCCCcee
Q psy2006         309 LG-ITLMARKTKTKYF  323 (351)
Q Consensus       309 tG-~~pf~~~~~~~~~  323 (351)
                      +| .+||...+..+++
T Consensus       208 t~~~~~~~~~~~~~~~  223 (283)
T d1mqba_         208 TYGERPYWELSNHEVM  223 (283)
T ss_dssp             TTSCCTTTTCCHHHHH
T ss_pred             hCCCCccccCCHHHHH
Confidence            85 4455544444443

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.4e-39  Score=286.38  Aligned_cols=195  Identities=20%  Similarity=0.240  Sum_probs=158.5

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee-CCeEEEEEecc
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY-HGHMCIAFEIL   80 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~-~~~~~lV~E~~   80 (351)
                      ++||+|+||+||+|++  .|+.||||+++.+ ...+.+.+|+++|++++|+|      |+++++++.. ++.+||||||+
T Consensus        13 ~~lG~G~fg~Vy~~~~--~~~~vAvK~i~~~-~~~~~~~~E~~~l~~l~Hpn------Iv~~~g~~~~~~~~~~lv~ey~   83 (262)
T d1byga_          13 QTIGKGEFGDVMLGDY--RGNKVAVKCIKND-ATAQAFLAEASVMTQLRHSN------LVQLLGVIVEEKGGLYIVTEYM   83 (262)
T ss_dssp             EEEEECSSCEEEEEEE--TTEEEEEEECCCC-C--HHHHHTHHHHTTCCCTT------BCCEEEEECCC--CCEEEECCC
T ss_pred             EEEecCCCeEEEEEEE--CCeEEEEEEECcH-HHHHHHHHHHHHHHhCCCCC------EeeEEEEEEecCCcEEEEEecc
Confidence            6799999999999995  6889999999764 34567889999999999888      9999998854 56799999999


Q ss_pred             -CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecC
Q psy2006          81 -GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFG  159 (351)
Q Consensus        81 -g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg  159 (351)
                       +|+|.+++.......+++..+..++.|++.|                       |.|||+.+++|||+|+.|+.+.   
T Consensus        84 ~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~a-----------------------l~ylH~~~ivH~dlkp~Nil~~---  137 (262)
T d1byga_          84 AKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEA-----------------------MEYLEGNNFVHRDLAARNVLVS---  137 (262)
T ss_dssp             TTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEEEC---
T ss_pred             CCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhh-----------------------ccccccCceeccccchHhheec---
Confidence             9999999977644457888888888888888                       9999999999999999999876   


Q ss_pred             CcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhh
Q psy2006         160 SATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRI  239 (351)
Q Consensus       160 ~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~  239 (351)
                                                                                                      
T Consensus       138 --------------------------------------------------------------------------------  137 (262)
T d1byga_         138 --------------------------------------------------------------------------------  137 (262)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc-ccccccccC
Q psy2006         240 LSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL-GITLMARKT  318 (351)
Q Consensus       240 ~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t-G~~pf~~~~  318 (351)
                                  ..+.+|++|||++...........+|+.|+|||.+.+..++.++|||||||++|||+| |.+||...+
T Consensus       138 ------------~~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~  205 (262)
T d1byga_         138 ------------EDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIP  205 (262)
T ss_dssp             ------------TTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSC
T ss_pred             ------------CCCCEeecccccceecCCCCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCC
Confidence                        2457899999999876666666788999999999999999999999999999999998 799998887


Q ss_pred             CCcee
Q psy2006         319 KTKYF  323 (351)
Q Consensus       319 ~~~~~  323 (351)
                      ..+++
T Consensus       206 ~~~~~  210 (262)
T d1byga_         206 LKDVV  210 (262)
T ss_dssp             GGGHH
T ss_pred             HHHHH
Confidence            77665

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=7.7e-38  Score=285.21  Aligned_cols=200  Identities=16%  Similarity=0.104  Sum_probs=164.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEeccC
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEILG   81 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~g   81 (351)
                      ++||+|+||+||+|++..+++.||||++.... ..+.+.+|+++++.+.|.+     +|+.+.+++...+..++||||++
T Consensus        13 ~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~-~~~~~~~E~~i~~~l~~~~-----~i~~~~~~~~~~~~~~ivme~~~   86 (299)
T d1ckia_          13 RKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT-KHPQLHIESKIYKMMQGGV-----GIPTIRWCGAEGDYNVMVMELLG   86 (299)
T ss_dssp             EEEEECSSSEEEEEEETTTTEEEEEEEEESCT-TSCCHHHHHHHHHHSTTST-----TCCCEEEEEEETTEEEEEEECCC
T ss_pred             EEEeeCCCcEEEEEEECCCCCEEEEEEEchhc-cCHHHHHHHHHHHHccCCC-----cccEEEEEEecCCEEEEEEEEcC
Confidence            67999999999999999999999999987643 3456788999999998655     27777788888889999999999


Q ss_pred             CCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCc
Q psy2006          82 LSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        82 ~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      +++.+.+.... ..+++..+..++.|++.|                       |+|||++|++|||+||+||.+...+  
T Consensus        87 ~~l~~~~~~~~-~~~~~~~~~~~~~qi~~~-----------------------l~~lH~~~iiHrDiKp~NIl~~~~~--  140 (299)
T d1ckia_          87 PSLEDLFNFCS-RKFSLKTVLLLADQMISR-----------------------IEYIHSKNFIHRDVKPDNFLMGLGK--  140 (299)
T ss_dssp             CBHHHHHHHTT-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGGEEECCGG--
T ss_pred             Cchhhhhhhcc-CCCcHHHHHHHHHHHHHH-----------------------HHHHHHCCeeeccCCHhhccccccC--
Confidence            99988876654 468888888888888888                       9999999999999999999876100  


Q ss_pred             ccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhhhhhc
Q psy2006         162 TFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQADRILS  241 (351)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~  241 (351)
                                                                                                      
T Consensus       141 --------------------------------------------------------------------------------  140 (299)
T d1ckia_         141 --------------------------------------------------------------------------------  140 (299)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhhhhhccccceeeeccCCcceecc----------ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc
Q psy2006         242 SVSSLVMRRVRRCDIRLIDFGSATFDDE----------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI  311 (351)
Q Consensus       242 ~~~~~~~~~~~~~~vkl~dfg~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~  311 (351)
                                ....++++|||++.....          ......||+.|+|||.+.+.+++.++|||||||++|+|+||.
T Consensus       141 ----------~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~  210 (299)
T d1ckia_         141 ----------KGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGS  210 (299)
T ss_dssp             ----------GTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSS
T ss_pred             ----------CCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCC
Confidence                      234689999999875321          223568999999999999999999999999999999999999


Q ss_pred             ccccccCCCcee
Q psy2006         312 TLMARKTKTKYF  323 (351)
Q Consensus       312 ~pf~~~~~~~~~  323 (351)
                      .||.+....+..
T Consensus       211 ~P~~~~~~~~~~  222 (299)
T d1ckia_         211 LPWQGLKAATKR  222 (299)
T ss_dssp             CTTCCCC-----
T ss_pred             CcccccchHHHH
Confidence            999887655543

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.3e-38  Score=286.93  Aligned_cols=196  Identities=20%  Similarity=0.309  Sum_probs=161.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||+|+||+||+|+++ +++.||||++...   ....+.+.+|+.+|++++|+|      |++++++|..+++.++||
T Consensus         7 ~~~iG~G~fg~Vy~~~~~-~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpn------Iv~~~~~~~~~~~~~i~~   79 (286)
T d1ob3a_           7 LEKIGEGTYGVVYKAQNN-YGETFALKKIRLEKEDEGIPSTTIREISILKELKHSN------IVKLYDVIHTKKRLVLVF   79 (286)
T ss_dssp             EEEEEEETTEEEEEEEET-TSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTT------BCCEEEEEECSSCEEEEE
T ss_pred             ccEEecCCCcEEEEEEeC-CCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCc------EEeeeeecccCCceeEEE
Confidence            478999999999999984 8899999999753   233567889999999999877      999999999999999999


Q ss_pred             eccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEee
Q psy2006          78 EILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLID  157 (351)
Q Consensus        78 E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~D  157 (351)
                      |++++.+...+.... ..+++..++.++.|++.|                       |+|||+.+|+|||+|+.||.+. 
T Consensus        80 e~~~~~~~~~~~~~~-~~l~~~~~~~i~~qi~~~-----------------------L~~LH~~~IvHrDiKp~NIll~-  134 (286)
T d1ob3a_          80 EHLDQDLKKLLDVCE-GGLESVTAKSFLLQLLNG-----------------------IAYCHDRRVLHRDLKPQNLLIN-  134 (286)
T ss_dssp             ECCSEEHHHHHHTST-TCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGEEEC-
T ss_pred             EeehhhhHHHHHhhc-CCcchhhhHHHHHHHHHH-----------------------HHHhccCcEEecCCCCceeeEc-
Confidence            999666666555443 468888888888888888                       9999999999999999999986 


Q ss_pred             cCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchhh
Q psy2006         158 FGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQAD  237 (351)
Q Consensus       158 fg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~~  237 (351)
                                                                                                      
T Consensus       135 --------------------------------------------------------------------------------  134 (286)
T d1ob3a_         135 --------------------------------------------------------------------------------  134 (286)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccccc
Q psy2006         238 RILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                    ..+.+|++|||.+.....   ......|++.|+|||.+.+. .++.++|+||+||++|+|++|+.|
T Consensus       135 --------------~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~~DiwslGv~l~el~~G~~p  200 (286)
T d1ob3a_         135 --------------REGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPL  200 (286)
T ss_dssp             --------------TTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCS
T ss_pred             --------------CCCCEEecccccceecccCccccceecccchhhhHHHHhCCCCCCcceeehhcCcHHHHHHHCCCC
Confidence                          245789999999865332   23445788999999999765 568999999999999999999999


Q ss_pred             ccccCCCce
Q psy2006         314 MARKTKTKY  322 (351)
Q Consensus       314 f~~~~~~~~  322 (351)
                      |.+.+..+.
T Consensus       201 f~~~~~~~~  209 (286)
T d1ob3a_         201 FPGVSEADQ  209 (286)
T ss_dssp             CCCSSHHHH
T ss_pred             CCCCCHHHH
Confidence            988765544

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-38  Score=287.30  Aligned_cols=197  Identities=16%  Similarity=0.199  Sum_probs=159.8

Q ss_pred             CccccCcccceEEEEEEeecCc----EEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDS----VVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~----~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      +++||+|+||+||+|.+..+++    .||+|.+...  ....+.+.+|+.+|++++|+|      |+++++++..+ ..+
T Consensus        14 ~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~Hpn------Iv~l~g~~~~~-~~~   86 (317)
T d1xkka_          14 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPH------VCRLLGICLTS-TVQ   86 (317)
T ss_dssp             EEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTT------BCCEEEEEESS-SEE
T ss_pred             eeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCC------EeeEEEEEecC-Cee
Confidence            3689999999999999887776    5788887643  234567899999999999888      99999999865 566


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +++|++ +++|.+++.... ..+++..+..++.|++.|                       |+|||+++++|||+|+.|+
T Consensus        87 ~v~e~~~~~~l~~~~~~~~-~~~~~~~~~~i~~qi~~g-----------------------l~yLH~~~iiHrDlKp~NI  142 (317)
T d1xkka_          87 LITQLMPFGCLLDYVREHK-DNIGSQYLLNWCVQIAKG-----------------------MNYLEDRRLVHRDLAARNV  142 (317)
T ss_dssp             EEEECCTTCBHHHHHHHTS-SSCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGGGE
T ss_pred             EEEEeccCCcccccccccc-cCCCHHHHHHHHHHHHHH-----------------------HHHHHHcCcccCcchhhcc
Confidence            777877 999999888764 467888888888888888                       9999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .|.                                                                             
T Consensus       143 ll~-----------------------------------------------------------------------------  145 (317)
T d1xkka_         143 LVK-----------------------------------------------------------------------------  145 (317)
T ss_dssp             EEE-----------------------------------------------------------------------------
T ss_pred             eeC-----------------------------------------------------------------------------
Confidence            887                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                        ..+.+||+|||++.....     ......||+.|+|||++.+..++.++|||||||++|+|+
T Consensus       146 ------------------~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDvwS~Gvil~el~  207 (317)
T d1xkka_         146 ------------------TPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELM  207 (317)
T ss_dssp             ------------------ETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhhhhhHHHHHHHHH
Confidence                              245799999999875322     123356899999999999999999999999999999999


Q ss_pred             c-ccccccccCCCcee
Q psy2006         309 L-GITLMARKTKTKYF  323 (351)
Q Consensus       309 t-G~~pf~~~~~~~~~  323 (351)
                      | |.+||.+.+..++.
T Consensus       208 t~g~~p~~~~~~~~~~  223 (317)
T d1xkka_         208 TFGSKPYDGIPASEIS  223 (317)
T ss_dssp             TTSCCTTTTSCGGGHH
T ss_pred             HCCCCCCCCCCHHHHH
Confidence            8 89999988777654

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-37  Score=289.81  Aligned_cols=192  Identities=22%  Similarity=0.400  Sum_probs=153.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeC------C
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYH------G   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~------~   71 (351)
                      +++||+|+||+||+|+++.+|+.||||++.+.   ......+.+|+.+|++++|+|      |++++++|...      .
T Consensus        22 ~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpn------Iv~~~~~f~~~~~~~~~~   95 (355)
T d2b1pa1          22 LKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKN------IISLLNVFTPQKTLEEFQ   95 (355)
T ss_dssp             EEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTT------BCCCSEEECSCCSTTTCC
T ss_pred             EEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCC------eeEEEEEEecccccccCc
Confidence            36899999999999999999999999999754   234456789999999999887      99999999744      5


Q ss_pred             eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          72 HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        72 ~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      ++|+|||||.+++.+.+..    .+++..++.++.|++.|                       |+|||++|++|||+||.
T Consensus        96 ~~~iv~Ey~~~~l~~~~~~----~~~~~~i~~~~~qil~g-----------------------l~~LH~~giiHrDlKP~  148 (355)
T d2b1pa1          96 DVYLVMELMDANLCQVIQM----ELDHERMSYLLYQMLCG-----------------------IKHLHSAGIIHRDLKPS  148 (355)
T ss_dssp             EEEEEEECCSEEHHHHHTS----CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCCGG
T ss_pred             eeEEEEeccchHHHHhhhc----CCCHHHHHHHHHHHHHH-----------------------HHHhhhcccccccCCcc
Confidence            9999999997777776643    47888888888888887                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.                                                                           
T Consensus       149 Nil~~---------------------------------------------------------------------------  153 (355)
T d2b1pa1         149 NIVVK---------------------------------------------------------------------------  153 (355)
T ss_dssp             GEEEC---------------------------------------------------------------------------
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            99876                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecCCCCCccceeeeeeeeEeecc
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYL  309 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~t  309 (351)
                                          ....++++|||++....  ......+||+.|+|||++.+..++.++|+||+||++++|++
T Consensus       154 --------------------~~~~~kl~df~~~~~~~~~~~~~~~~~t~~y~aPE~l~~~~~~~~~DiwSlG~~l~ell~  213 (355)
T d2b1pa1         154 --------------------SDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVR  213 (355)
T ss_dssp             --------------------TTCCEEECCCCC---------------CCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHH
T ss_pred             --------------------cccceeeechhhhhccccccccccccccccccChhhhcCCCCCCCcccccccchHHHHhh
Confidence                                23568999999876532  33455788999999999999999999999999999999999


Q ss_pred             ccccccccCCC
Q psy2006         310 GITLMARKTKT  320 (351)
Q Consensus       310 G~~pf~~~~~~  320 (351)
                      |.+||.+.+..
T Consensus       214 g~~pF~~~~~~  224 (355)
T d2b1pa1         214 HKILFPGRDYI  224 (355)
T ss_dssp             SSCSSCCSSHH
T ss_pred             CCCCCCCCCHH
Confidence            99999876533

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-38  Score=290.94  Aligned_cols=196  Identities=20%  Similarity=0.277  Sum_probs=164.6

Q ss_pred             ccccCcccceEEEEEEe---ecCcEEEEEEecchh-----hhhHHHHHHHHHHHHhCC-CCCCCCcceeeeeeeEeeCCe
Q psy2006           2 CSLNCVASNHVCTNVVY---EVDSVVALKIIKNVE-----KYREAARLEINALQKIGE-KDPNGRHLCVKMLDWFDYHGH   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~---~~~~~vAiK~~~~~~-----~~~~~~~~E~~~l~~l~h-~~~~g~~~Iv~l~~~f~~~~~   72 (351)
                      ++||+|+||+||+|.+.   .+|+.||||++++..     ...+.+.+|+++|++++| +|      |++++++|+....
T Consensus        30 ~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pn------Iv~~~~~~~~~~~  103 (322)
T d1vzoa_          30 KVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPF------LVTLHYAFQTETK  103 (322)
T ss_dssp             EEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTT------BCCEEEEEEETTE
T ss_pred             EEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCe------EEEeeeeeccCCc
Confidence            68999999999999874   478999999996431     234567789999999987 45      9999999999999


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +++||||+ +++|.+++...+  .+++..++.++.|++.|                       |+|+|+++++|||+||+
T Consensus       104 ~~~v~e~~~~~~L~~~i~~~~--~~~e~~~~~~~~Qi~~a-----------------------l~~lH~~~ivHrDiKp~  158 (322)
T d1vzoa_         104 LHLILDYINGGELFTHLSQRE--RFTEHEVQIYVGEIVLA-----------------------LEHLHKLGIIYRDIKLE  158 (322)
T ss_dssp             EEEEECCCCSCBHHHHHHHHS--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGG
T ss_pred             eeeeeecccccHHHHHHHhcc--cccHHHHHHHHHHHHHH-----------------------HHHhhcCCEEeccCCcc
Confidence            99999999 999999998876  46777788778877777                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.|.                                                                           
T Consensus       159 Nill~---------------------------------------------------------------------------  163 (322)
T d1vzoa_         159 NILLD---------------------------------------------------------------------------  163 (322)
T ss_dssp             GEEEC---------------------------------------------------------------------------
T ss_pred             ceeec---------------------------------------------------------------------------
Confidence            99886                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceec----cccccccccceeeCceeeecC--CCCCccceeeeeeeeE
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD----EHHSTIVSTRHYRAPEVILEL--GWAQPCDVWSIGCIIF  305 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~----~~~~~~~gt~~y~aPE~~~~~--~~~~~~DiwslG~~l~  305 (351)
                                          ..+.+||+|||++....    .......|++.|++||.+.+.  .++.++||||+||++|
T Consensus       164 --------------------~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLy  223 (322)
T d1vzoa_         164 --------------------SNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMY  223 (322)
T ss_dssp             --------------------TTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHH
T ss_pred             --------------------CCCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHH
Confidence                                23579999999986532    223457789999999999765  3578999999999999


Q ss_pred             eeccccccccccCCCcee
Q psy2006         306 ELYLGITLMARKTKTKYF  323 (351)
Q Consensus       306 ~l~tG~~pf~~~~~~~~~  323 (351)
                      +|+||..||.+.+..+..
T Consensus       224 elltG~~PF~~~~~~~~~  241 (322)
T d1vzoa_         224 ELLTGASPFTVDGEKNSQ  241 (322)
T ss_dssp             HHHHSSCTTSCTTSCCCH
T ss_pred             HHHhCCCCCCCCCHHHHH
Confidence            999999999888766654

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=2.5e-37  Score=285.46  Aligned_cols=188  Identities=19%  Similarity=0.343  Sum_probs=158.9

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhC-CCCCCCCcceeeeeeeEeeC--CeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIG-EKDPNGRHLCVKMLDWFDYH--GHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~-h~~~~g~~~Iv~l~~~f~~~--~~~~lV~   77 (351)
                      +++||+|+||+||+|+++.+++.||||+++..  ..+.+.+|+++|+.+. |+|      |++++++|...  .++++||
T Consensus        40 ~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~--~~~~~~~Ei~il~~l~~hpn------Iv~~~~~~~~~~~~~~~~v~  111 (328)
T d3bqca1          40 VRKLGRGKYSEVFEAINITNNEKVVVKILKPV--KKKKIKREIKILENLRGGPN------IITLADIVKDPVSRTPALVF  111 (328)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSS--CHHHHHHHHHHHHHHTTSTT------BCCEEEEEECTTTCSEEEEE
T ss_pred             EEEEecCcCeEEEEEEECCCCCEEEEEEECHH--HHHHHHHHHHHHHhccCCCC------CcEEEEEEEecCCCceeEEE
Confidence            36899999999999999999999999999753  2467889999999996 666      99999999854  4899999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      ||| +++|.++.     ..+++..++.++.|++.|                       |+|||++||+|||+||+||.+.
T Consensus       112 e~~~~~~L~~~~-----~~l~e~~i~~i~~qil~a-----------------------L~~LH~~gIvHrDiKp~NILi~  163 (328)
T d3bqca1         112 EHVNNTDFKQLY-----QTLTDYDIRFYMYEILKA-----------------------LDYCHSMGIMHRDVKPHNVMID  163 (328)
T ss_dssp             ECCCSCBGGGTT-----TSCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEE
T ss_pred             eecCCCcHHHHh-----cCCCHHHHHHHHHHHHHH-----------------------HHHHhhcccccccccccceEEc
Confidence            999 78887653     247788888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                      .                                                                               
T Consensus       164 ~-------------------------------------------------------------------------------  164 (328)
T d3bqca1         164 H-------------------------------------------------------------------------------  164 (328)
T ss_dssp             T-------------------------------------------------------------------------------
T ss_pred             C-------------------------------------------------------------------------------
Confidence            1                                                                               


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceec--cccccccccceeeCceeeecC-CCCCccceeeeeeeeEeecccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPEVILEL-GWAQPCDVWSIGCIIFELYLGITL  313 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~--~~~~~~~gt~~y~aPE~~~~~-~~~~~~DiwslG~~l~~l~tG~~p  313 (351)
                                     ....+||+|||++....  ......+||+.|+|||.+.+. .++.++|+||+||+++++++|..|
T Consensus       165 ---------------~~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~~l~e~~~g~~p  229 (328)
T d3bqca1         165 ---------------EHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEP  229 (328)
T ss_dssp             ---------------TTTEEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSS
T ss_pred             ---------------CCCeeeecccccceeccCCCcccccccCccccCcccccCCCCCCcccchhhhhhhhHHhccCCCC
Confidence                           12358999999997643  344567889999999998765 469999999999999999999999


Q ss_pred             ccccC
Q psy2006         314 MARKT  318 (351)
Q Consensus       314 f~~~~  318 (351)
                      |....
T Consensus       230 f~~~~  234 (328)
T d3bqca1         230 FFHGH  234 (328)
T ss_dssp             SSCCS
T ss_pred             CCCCc
Confidence            97654

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-37  Score=288.16  Aligned_cols=195  Identities=24%  Similarity=0.448  Sum_probs=161.4

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecch---hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC------
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNV---EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG------   71 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~---~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~------   71 (351)
                      +++||+|+||+||+|+++.+++.||||++.+.   ....+.+.+|+++|++++|+|      |++++++|....      
T Consensus        23 ~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~------iv~~~~~~~~~~~~~~~~   96 (348)
T d2gfsa1          23 LSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHEN------VIGLLDVFTPARSLEEFN   96 (348)
T ss_dssp             EEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTT------BCCCSEEECSCSSTTTCC
T ss_pred             EEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCC------eeeEEEEEeeccccccCc
Confidence            36899999999999999999999999999753   233456789999999999888      999999996443      


Q ss_pred             eEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          72 HMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        72 ~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +.+++++++|++|.+++...   ++++..++.++.|++.|                       |+|||++||+|||+|++
T Consensus        97 ~~~i~~~~~gg~L~~~~~~~---~l~e~~~~~i~~qil~a-----------------------L~~LH~~giiHrDiKp~  150 (348)
T d2gfsa1          97 DVYLVTHLMGADLNNIVKCQ---KLTDDHVQFLIYQILRG-----------------------LKYIHSADIIHRDLKPS  150 (348)
T ss_dssp             CCEEEEECCSEEHHHHHTTC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCCCCCGG
T ss_pred             eEEEEEeecCCchhhhcccc---cccHHHHHHHHHHHHHH-----------------------HHHHHhCCCcccccCCc
Confidence            45555555599999998653   58888888888888888                       99999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      |+.+.                                                                           
T Consensus       151 NILi~---------------------------------------------------------------------------  155 (348)
T d2gfsa1         151 NLAVN---------------------------------------------------------------------------  155 (348)
T ss_dssp             GEEEC---------------------------------------------------------------------------
T ss_pred             ccccc---------------------------------------------------------------------------
Confidence            99876                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCC-CCCccceeeeeeeeEeeccc
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~~l~~l~tG  310 (351)
                                          ..+.+|++|||.+...........||+.|+|||.+.+.. ++.++|+||+||++|+|++|
T Consensus       156 --------------------~~~~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~~~~~~DiwSlGv~l~~ll~g  215 (348)
T d2gfsa1         156 --------------------EDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTG  215 (348)
T ss_dssp             --------------------TTCCEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCSCCCTTHHHHHHHHHHHHHHHS
T ss_pred             --------------------ccccccccccchhcccCcccccccccccccCchhhcCCccCCcccchhhhhHHHHHHHhC
Confidence                                235789999999987777777889999999999887754 58899999999999999999


Q ss_pred             cccccccCCCce
Q psy2006         311 ITLMARKTKTKY  322 (351)
Q Consensus       311 ~~pf~~~~~~~~  322 (351)
                      .+||.+.+....
T Consensus       216 ~~pF~~~~~~~~  227 (348)
T d2gfsa1         216 RTLFPGTDHIDQ  227 (348)
T ss_dssp             SCSCCCSSHHHH
T ss_pred             CCCCCCCCHHHH
Confidence            999988765443

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-37  Score=280.44  Aligned_cols=212  Identities=18%  Similarity=0.210  Sum_probs=150.1

Q ss_pred             ccccCcccceEEEEEEee-----cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCC-CCCCCCcceeeeeeeEeeCC-e
Q psy2006           2 CSLNCVASNHVCTNVVYE-----VDSVVALKIIKNV--EKYREAARLEINALQKIGE-KDPNGRHLCVKMLDWFDYHG-H   72 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h-~~~~g~~~Iv~l~~~f~~~~-~   72 (351)
                      ++||+|+||+||+|.++.     +++.||||+++..  ....+.+.+|..++.++.| ++      |+.+++++...+ .
T Consensus        19 ~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~------iv~~~~~~~~~~~~   92 (299)
T d1ywna1          19 KPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLN------VVNLLGACTKPGGP   92 (299)
T ss_dssp             EEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSTTSC
T ss_pred             eEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCe------EEEeeeeeccCCCe
Confidence            679999999999999765     3478999999753  2344567788888888864 33      999999876654 7


Q ss_pred             EEEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCC
Q psy2006          73 MCIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRC  151 (351)
Q Consensus        73 ~~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~  151 (351)
                      +++||||| +|+|.++++.......+...+....         ....+++..+..++.|++.||.|||+++|+|||+||.
T Consensus        93 ~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~  163 (299)
T d1ywna1          93 LMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDL---------YKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAAR  163 (299)
T ss_dssp             CEEEEECCTTCBHHHHHHHTGGGBCC--------------------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGG
T ss_pred             EEEEEEecCCCcHHHHHHhccccccccccchhhh---------hcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCcc
Confidence            99999999 8999999987532111111000000         0012444445555555555599999999999999999


Q ss_pred             CeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhc
Q psy2006         152 DIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVH  231 (351)
Q Consensus       152 ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~  231 (351)
                      ||.|.                                                                           
T Consensus       164 NILl~---------------------------------------------------------------------------  168 (299)
T d1ywna1         164 NILLS---------------------------------------------------------------------------  168 (299)
T ss_dssp             GEEEC---------------------------------------------------------------------------
T ss_pred             ceeEC---------------------------------------------------------------------------
Confidence            99886                                                                           


Q ss_pred             ccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         232 AQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                          ..+.+||+|||+++....     ......||+.|+|||++.+..++.++||||+||++|+
T Consensus       169 --------------------~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~e  228 (299)
T d1ywna1         169 --------------------EKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE  228 (299)
T ss_dssp             --------------------GGGCEEECC------CCSCTTSCCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             --------------------CCCcEEEccCcchhhccccccccccCceeeCccccchhHhhcCCCCcccceeehHHHHHH
Confidence                                245799999999875321     2234679999999999999999999999999999999


Q ss_pred             eccc-cccccccCCCcee
Q psy2006         307 LYLG-ITLMARKTKTKYF  323 (351)
Q Consensus       307 l~tG-~~pf~~~~~~~~~  323 (351)
                      |+|| .+||.+.+..+.+
T Consensus       229 llt~~~~p~~~~~~~~~~  246 (299)
T d1ywna1         229 IFSLGASPYPGVKIDEEF  246 (299)
T ss_dssp             HHTTSCCSSTTCCCSHHH
T ss_pred             HHhCCCCCCCCCCHHHHH
Confidence            9986 5688877665544

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.5e-37  Score=282.13  Aligned_cols=222  Identities=15%  Similarity=0.161  Sum_probs=166.4

Q ss_pred             CccccCcccceEEEEEEee-----cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           1 MCSLNCVASNHVCTNVVYE-----VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +++||+|+||+||+|+.+.     +++.||||++...  ....+.+.+|+++|++++|+|      |+++++++...++.
T Consensus        18 ~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~n------iv~~~~~~~~~~~~   91 (301)
T d1lufa_          18 VRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPN------IVKLLGVCAVGKPM   91 (301)
T ss_dssp             EEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTT------BCCEEEEECSSSSC
T ss_pred             eEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCC------cccceeeeccCCce
Confidence            3679999999999999753     5689999999753  234567899999999999888      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++||||+ +++|.+++.............. ...............++...+..++.|++.||+|||+++++|||+|+.|
T Consensus        92 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~N  170 (301)
T d1lufa_          92 CLLFEYMAYGDLNEFLRSMSPHTVCSLSHS-DLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRN  170 (301)
T ss_dssp             EEEEECCTTCBHHHHHHHTCC-----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             EEEEEecCCCcHHHHHHhcCcccccccccc-ccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEcccc
Confidence            9999999 8999999987643211111000 0000000011122346677777777777777999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.|.                                                                            
T Consensus       171 ILld----------------------------------------------------------------------------  174 (301)
T d1lufa_         171 CLVG----------------------------------------------------------------------------  174 (301)
T ss_dssp             EEEC----------------------------------------------------------------------------
T ss_pred             eEEC----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceec-----cccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDD-----EHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~-----~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                         ....+||+|||++....     .......||+.|+|||.+.+..++.++|||||||++|||
T Consensus       175 -------------------~~~~~Kl~DFGls~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~el  235 (301)
T d1lufa_         175 -------------------ENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEI  235 (301)
T ss_dssp             -------------------GGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             -------------------CCCcEEEccchhheeccCCccccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHH
Confidence                               24679999999986421     122346788999999999999999999999999999999


Q ss_pred             cccc-ccccccCCCceee
Q psy2006         308 YLGI-TLMARKTKTKYFY  324 (351)
Q Consensus       308 ~tG~-~pf~~~~~~~~~~  324 (351)
                      ++|. +||.+.+..+++.
T Consensus       236 l~~~~~p~~~~~~~e~~~  253 (301)
T d1lufa_         236 FSYGLQPYYGMAHEEVIY  253 (301)
T ss_dssp             HTTTCCTTTTSCHHHHHH
T ss_pred             HccCCCCCCCCCHHHHHH
Confidence            9885 7888887776653

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=283.07  Aligned_cols=212  Identities=17%  Similarity=0.179  Sum_probs=159.4

Q ss_pred             ccccCcccceEEEEEEeecCcE--EEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSV--VALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHMCIA   76 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~--vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~~lV   76 (351)
                      ++||+|+||+||+|.++.++..  ||||.+...  ....+.+.+|+++|+++ +|+|      |+++++++...+.+++|
T Consensus        16 ~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~Hpn------Iv~~~~~~~~~~~~~iV   89 (309)
T d1fvra_          16 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPN------IINLLGACEHRGYLYLA   89 (309)
T ss_dssp             EEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTT------BCCEEEEEEETTEEEEE
T ss_pred             EEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCC------EeeEEEEEecCCeeEEE
Confidence            5799999999999999888764  677777532  23345688999999998 5777      99999999999999999


Q ss_pred             Eecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEE
Q psy2006          77 FEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRL  155 (351)
Q Consensus        77 ~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l  155 (351)
                      |||+ +|+|.++++....  +.......       ........+++..+..++.|++.||.|+|+++++|||+|+.|+.+
T Consensus        90 ~ey~~~g~L~~~l~~~~~--~~~~~~~~-------~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~  160 (309)
T d1fvra_          90 IEYAPHGNLLDFLRKSRV--LETDPAFA-------IANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILV  160 (309)
T ss_dssp             ECCCTTCBHHHHHHTTCH--HHHCHHHH-------HHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEE
T ss_pred             EEecCCCcHHHHHhhccc--cccchhhh-------ccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEE
Confidence            9999 8999999976531  00000000       011112245555555555566666999999999999999999987


Q ss_pred             eecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccch
Q psy2006         156 IDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQ  235 (351)
Q Consensus       156 ~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~  235 (351)
                      .                                                                               
T Consensus       161 ~-------------------------------------------------------------------------------  161 (309)
T d1fvra_         161 G-------------------------------------------------------------------------------  161 (309)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             c-------------------------------------------------------------------------------
Confidence            6                                                                               


Q ss_pred             hhhhhccchhhhhhhccccceeeeccCCcceecc--ccccccccceeeCceeeecCCCCCccceeeeeeeeEeecccc-c
Q psy2006         236 ADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLGI-T  312 (351)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG~-~  312 (351)
                                      ..+.+||+|||++.....  ......||+.|+|||.+.+..++.++|||||||++|+|++|. +
T Consensus       162 ----------------~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~  225 (309)
T d1fvra_         162 ----------------ENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGT  225 (309)
T ss_dssp             ----------------GGGCEEECCTTCEESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred             ----------------CCCceEEccccccccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCC
Confidence                            246799999999876332  223457899999999999999999999999999999999964 6


Q ss_pred             cccccCCCcee
Q psy2006         313 LMARKTKTKYF  323 (351)
Q Consensus       313 pf~~~~~~~~~  323 (351)
                      ||.+.+..+++
T Consensus       226 p~~~~~~~~~~  236 (309)
T d1fvra_         226 PYCGMTCAELY  236 (309)
T ss_dssp             TTTTCCHHHHH
T ss_pred             CCCCCCHHHHH
Confidence            78887766654

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-36  Score=276.03  Aligned_cols=191  Identities=21%  Similarity=0.278  Sum_probs=161.0

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchh---hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVE---KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAF   77 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~---~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~   77 (351)
                      +++||+|+||+||+|+++.+++.||||+++...   .....+.+|+.+|+.++|+|      |++++++|....+.++|+
T Consensus         7 i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~n------iv~~~~~~~~~~~~~iv~   80 (292)
T d1unla_           7 LEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKN------IVRLHDVLHSDKKLTLVF   80 (292)
T ss_dssp             EEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTT------BCCEEEEEECSSEEEEEE
T ss_pred             eeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCC------EEeeccccccccceeEEe
Confidence            468999999999999999999999999996532   34567889999999999887      999999999999999999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEe
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLI  156 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~  156 (351)
                      |++ +++|..++...+  .+++..++.++.|++.|                       |+|||++||+|||+||+|+.+.
T Consensus        81 ~~~~~~~l~~~~~~~~--~~~~~~~~~~~~q~~~a-----------------------L~~lH~~~IvHrDiKP~NIli~  135 (292)
T d1unla_          81 EFCDQDLKKYFDSCNG--DLDPEIVKSFLFQLLKG-----------------------LGFCHSRNVLHRDLKPQNLLIN  135 (292)
T ss_dssp             ECCSEEHHHHHHHTTT--CCCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECCCCSGGGEEEC
T ss_pred             eecccccccccccccc--ccchhHHHHHHHHHHHH-----------------------HHHhhcCCEeeecccCcccccc
Confidence            999 777777665543  67888888888888888                       9999999999999999999886


Q ss_pred             ecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccchh
Q psy2006         157 DFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQTQA  236 (351)
Q Consensus       157 Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~~~  236 (351)
                                                                                                      
T Consensus       136 --------------------------------------------------------------------------------  135 (292)
T d1unla_         136 --------------------------------------------------------------------------------  135 (292)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hhhhccchhhhhhhccccceeeeccCCcceecc---ccccccccceeeCceeeecCC-CCCccceeeeeeeeEeeccccc
Q psy2006         237 DRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPEVILELG-WAQPCDVWSIGCIIFELYLGIT  312 (351)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~---~~~~~~gt~~y~aPE~~~~~~-~~~~~DiwslG~~l~~l~tG~~  312 (351)
                                     ....+||+|||.+.....   ......+++.|+|||.+.+.. ++.++||||+||++|+|++|..
T Consensus       136 ---------------~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~DiwSlG~il~ell~g~~  200 (292)
T d1unla_         136 ---------------RNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGR  200 (292)
T ss_dssp             ---------------TTCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSC
T ss_pred             ---------------cCCceeeeecchhhcccCCCccceeeccccchhhhhHhccCCCCCchhhccccchHHHHHhhCCC
Confidence                           235689999999976433   223455678899999987665 5899999999999999999999


Q ss_pred             ccccc
Q psy2006         313 LMARK  317 (351)
Q Consensus       313 pf~~~  317 (351)
                      ||...
T Consensus       201 p~~~~  205 (292)
T d1unla_         201 PLFPG  205 (292)
T ss_dssp             CSCCC
T ss_pred             CCCCC
Confidence            86443

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-37  Score=278.09  Aligned_cols=198  Identities=16%  Similarity=0.184  Sum_probs=155.9

Q ss_pred             CccccCcccceEEEEEEeec-C--cEEEEEEecch----hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           1 MCSLNCVASNHVCTNVVYEV-D--SVVALKIIKNV----EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~-~--~~vAiK~~~~~----~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +++||+|+||+||+|+.... +  ..||||++...    ....+.+.+|+.+|++++|+|      |+++++++.. +.+
T Consensus        13 ~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~n------Iv~~~g~~~~-~~~   85 (273)
T d1u46a_          13 LEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRN------LIRLYGVVLT-PPM   85 (273)
T ss_dssp             EEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTT------BCCEEEEECS-SSC
T ss_pred             EEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCC------EEEEEEEEee-cch
Confidence            36799999999999986543 2  47899999753    233467889999999999888      9999999965 578


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      ++||||| ++++.+++.... ..+++..+..++.|++.|                       |.|||+++++|||+|+.|
T Consensus        86 ~lv~e~~~~~~l~~~~~~~~-~~l~~~~~~~~~~qi~~g-----------------------l~ylH~~~iiHrDikp~N  141 (273)
T d1u46a_          86 KMVTELAPLGSLLDRLRKHQ-GHFLLGTLSRYAVQVAEG-----------------------MGYLESKRFIHRDLAARN  141 (273)
T ss_dssp             EEEEECCTTCBHHHHHHHHG-GGSCHHHHHHHHHHHHHH-----------------------HHHHHHTTEECSCCCGGG
T ss_pred             heeeeeecCcchhhhhhccc-CCCCHHHHHHHHHHHHHH-----------------------HHHhhhCCEeeeeecHHH
Confidence            9999999 899999887664 357888888888888888                       999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      +.|.                                                                            
T Consensus       142 Ill~----------------------------------------------------------------------------  145 (273)
T d1u46a_         142 LLLA----------------------------------------------------------------------------  145 (273)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             hccc----------------------------------------------------------------------------
Confidence            9887                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceeccc------cccccccceeeCceeeecCCCCCccceeeeeeeeEe
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEH------HSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFE  306 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~  306 (351)
                                         ....+||+|||++......      .....|++.|+|||.+.+..++.++|||||||++||
T Consensus       146 -------------------~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~e  206 (273)
T d1u46a_         146 -------------------TRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWE  206 (273)
T ss_dssp             -------------------ETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHH
T ss_pred             -------------------cccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCCCcchhhhhhHHHHHH
Confidence                               2457999999998763221      123456788999999999999999999999999999


Q ss_pred             ecc-ccccccccCCCceee
Q psy2006         307 LYL-GITLMARKTKTKYFY  324 (351)
Q Consensus       307 l~t-G~~pf~~~~~~~~~~  324 (351)
                      |+| |..||.+.+..+.+.
T Consensus       207 mlt~G~~Pf~~~~~~~~~~  225 (273)
T d1u46a_         207 MFTYGQEPWIGLNGSQILH  225 (273)
T ss_dssp             HHTTSCCTTTTCCHHHHHH
T ss_pred             HHhCCCCCCCCcCHHHHHH
Confidence            998 899999988777653

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-36  Score=276.64  Aligned_cols=198  Identities=19%  Similarity=0.270  Sum_probs=155.7

Q ss_pred             ccccCcccceEEEEEEeecC-------cEEEEEEecchh--hhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCC
Q psy2006           2 CSLNCVASNHVCTNVVYEVD-------SVVALKIIKNVE--KYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHG   71 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~-------~~vAiK~~~~~~--~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~   71 (351)
                      ++||+|+||.||+|++..++       ..||||++....  .....+.+|+..+.++ +|+|      |++++++|..++
T Consensus        19 ~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~Hpn------Iv~~~~~~~~~~   92 (299)
T d1fgka_          19 KPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKN------IINLLGACTQDG   92 (299)
T ss_dssp             EECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSSS
T ss_pred             eEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCe------EEecccccccCC
Confidence            67999999999999976544       479999997542  3446778899999998 5666      999999999999


Q ss_pred             eEEEEEecc-CCCHHHHHHhcCC--------------CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhh
Q psy2006          72 HMCIAFEIL-GLSVFDFLKENNY--------------LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVD  136 (351)
Q Consensus        72 ~~~lV~E~~-g~sL~~~l~~~~~--------------~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~  136 (351)
                      .+++||||| +|+|.+++.....              ..+++..+..++.|++.|                       |+
T Consensus        93 ~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~a-----------------------l~  149 (299)
T d1fgka_          93 PLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARG-----------------------ME  149 (299)
T ss_dssp             SCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHH-----------------------HH
T ss_pred             eEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHH-----------------------HH
Confidence            999999999 9999999986642              234555555555555555                       99


Q ss_pred             ccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhh
Q psy2006         137 YNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEAL  216 (351)
Q Consensus       137 ~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l  216 (351)
                      |||+.+++|||+|+.|+.+.                                                            
T Consensus       150 ylH~~~ivHrDiKp~NiLl~------------------------------------------------------------  169 (299)
T d1fgka_         150 YLASKKCIHRDLAARNVLVT------------------------------------------------------------  169 (299)
T ss_dssp             HHHHTTCCCSCCSGGGEEEC------------------------------------------------------------
T ss_pred             HhhhCCEEeeeecccceeec------------------------------------------------------------
Confidence            99999999999999999876                                                            


Q ss_pred             cCCCCCCCCchhhhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCC
Q psy2006         217 RHPFFDKLPSSVRVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGW  291 (351)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~  291 (351)
                                                         ..+.+||+|||++.....     ......||+.|+|||.+.+..+
T Consensus       170 -----------------------------------~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y  214 (299)
T d1fgka_         170 -----------------------------------EDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIY  214 (299)
T ss_dssp             -----------------------------------TTCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCC
T ss_pred             -----------------------------------CCCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCC
Confidence                                               245789999999875322     2234678899999999999999


Q ss_pred             CCccceeeeeeeeEeecc-ccccccccCCCcee
Q psy2006         292 AQPCDVWSIGCIIFELYL-GITLMARKTKTKYF  323 (351)
Q Consensus       292 ~~~~DiwslG~~l~~l~t-G~~pf~~~~~~~~~  323 (351)
                      +.++|||||||++|+|++ |.+||.+.+..+++
T Consensus       215 ~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~  247 (299)
T d1fgka_         215 THQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF  247 (299)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH
T ss_pred             CchhhhHHhHHHHHHhccCCCCCCCCCCHHHHH
Confidence            999999999999999998 79999887766554

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-36  Score=275.92  Aligned_cols=191  Identities=15%  Similarity=0.158  Sum_probs=152.2

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCC----eEEEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHG----HMCIAF   77 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~----~~~lV~   77 (351)
                      ++||+|+||+||+|+  .+|+.||||++............|+..+..++|+|      |+++++++...+    ++|+||
T Consensus         9 ~~iG~G~fg~Vy~~~--~~g~~vAvK~~~~~~~~~~~~e~ei~~~~~~~Hpn------Iv~~~~~~~~~~~~~~~~~lv~   80 (303)
T d1vjya_           9 ESIGKGRFGEVWRGK--WRGEEVAVKIFSSREERSWFREAEIYQTVMLRHEN------ILGFIAADNKDNGTWTQLWLVS   80 (303)
T ss_dssp             EEEECCSSSEEEEEE--ETTEEEEEEEECGGGHHHHHHHHHHHTSTTCCCTT------BCCEEEEEEEECSSSEEEEEEE
T ss_pred             EEEeeCCCeEEEEEE--ECCEEEEEEEECccchhHHHHHHHHHHHhhCCCCc------CcceEEEEEeCCCcceEEEEEE
Confidence            679999999999998  57999999999764433333344555666777777      999999998765    799999


Q ss_pred             ecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc--------cccccccc
Q psy2006          78 EIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK--------KKREVRRV  148 (351)
Q Consensus        78 E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~--------~~i~h~d~  148 (351)
                      ||| +|+|.+++++.   .+++.....++.|++.|                       ++|+|+        +||+|||+
T Consensus        81 Ey~~~g~L~~~l~~~---~l~~~~~~~~~~~ia~g-----------------------l~~lH~~~~~~~~~~~IvHrDl  134 (303)
T d1vjya_          81 DYHEHGSLFDYLNRY---TVTVEGMIKLALSTASG-----------------------LAHLHMEIVGTQGKPAIAHRDL  134 (303)
T ss_dssp             ECCTTCBHHHHHHHC---CBCHHHHHHHHHHHHHH-----------------------HHHHHCCBCSTTCBCEEECSCC
T ss_pred             ecccCCCHHHHHhcC---CCCHHHHHHHHHHHHHH-----------------------HHHHHHhhhhhccCCCeecccc
Confidence            999 99999999875   47788888888888887                       888875        69999999


Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchh
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSV  228 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~  228 (351)
                      |++||.|.                                                                        
T Consensus       135 Kp~NILl~------------------------------------------------------------------------  142 (303)
T d1vjya_         135 KSKNILVK------------------------------------------------------------------------  142 (303)
T ss_dssp             CGGGEEEC------------------------------------------------------------------------
T ss_pred             CccceEEc------------------------------------------------------------------------
Confidence            99999876                                                                        


Q ss_pred             hhcccchhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeecCC------CCCcc
Q psy2006         229 RVHAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILELG------WAQPC  295 (351)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~------~~~~~  295 (351)
                                             ..+.+||+|||++.....       ......||+.|+|||++.+..      ++.++
T Consensus       143 -----------------------~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~  199 (303)
T d1vjya_         143 -----------------------KNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRA  199 (303)
T ss_dssp             -----------------------TTSCEEECCCTTCEEEETTTTEECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHH
T ss_pred             -----------------------CCCCeEEEecCccccccCCCcceeccccceecccCcCChhhccccccccCCCcCcch
Confidence                                   246799999999876322       223468999999999986542      46789


Q ss_pred             ceeeeeeeeEeeccccccccccCCCc
Q psy2006         296 DVWSIGCIIFELYLGITLMARKTKTK  321 (351)
Q Consensus       296 DiwslG~~l~~l~tG~~pf~~~~~~~  321 (351)
                      |||||||++|+|+||..||......+
T Consensus       200 Di~S~Gvvl~el~tg~~~~~~~~~~~  225 (303)
T d1vjya_         200 DIYAMGLVFWEIARRCSIGGIHEDYQ  225 (303)
T ss_dssp             HHHHHHHHHHHHHHTBCBTTBCCCCC
T ss_pred             hhhhhHHHHHHHhhCCCCCCcccccc
Confidence            99999999999999999886655443

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-36  Score=279.25  Aligned_cols=214  Identities=21%  Similarity=0.264  Sum_probs=166.0

Q ss_pred             ccccCcccceEEEEEEe-----ecCcEEEEEEecch--hhhhHHHHHHHHHHHHh-CCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVY-----EVDSVVALKIIKNV--EKYREAARLEINALQKI-GEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~-----~~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l-~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      ++||+|+||+||+|+++     .+++.||||++...  ......+.+|+.+++++ +|+|      ||++++++...+.+
T Consensus        29 ~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~Hpn------Iv~~~g~~~~~~~~  102 (311)
T d1t46a_          29 KTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMN------IVNLLGACTIGGPT  102 (311)
T ss_dssp             EEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTT------BCCEEEEECSSSSC
T ss_pred             eEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCC------EEEEEEEEeeCCEE
Confidence            57999999999999864     35679999999753  33455678999999999 4666      99999999999999


Q ss_pred             EEEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCC
Q psy2006          74 CIAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCD  152 (351)
Q Consensus        74 ~lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~n  152 (351)
                      +|||||| +++|.+++++......+.......       .......+++..+..++.|++.|+.|||+++++|||+|+.|
T Consensus       103 ~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~N  175 (311)
T d1t46a_         103 LVITEYCCYGDLLNFLRRKRDSFICSKTSPAI-------MEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARN  175 (311)
T ss_dssp             EEEEECCTTEEHHHHHHHTTTTC---------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGG
T ss_pred             EEEEEcCCCCCHHHHHHhcccccccccccccc-------ccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccc
Confidence            9999999 899999998875332221111110       11223456777777777777777999999999999999999


Q ss_pred             eEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcc
Q psy2006         153 IRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHA  232 (351)
Q Consensus       153 i~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~  232 (351)
                      |.+.                                                                            
T Consensus       176 Il~~----------------------------------------------------------------------------  179 (311)
T d1t46a_         176 ILLT----------------------------------------------------------------------------  179 (311)
T ss_dssp             EEEE----------------------------------------------------------------------------
T ss_pred             cccc----------------------------------------------------------------------------
Confidence            9886                                                                            


Q ss_pred             cchhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         233 QTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                         ..+.++++|||.++....     ......||+.|+|||.+.+..++.++|||||||++|+|
T Consensus       180 -------------------~~~~~ki~DfG~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~el  240 (311)
T d1t46a_         180 -------------------HGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWEL  240 (311)
T ss_dssp             -------------------TTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             -------------------ccCcccccccchheeccCCCcceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHH
Confidence                               245789999999875322     12346789999999999999999999999999999999


Q ss_pred             cc-ccccccccCCCcee
Q psy2006         308 YL-GITLMARKTKTKYF  323 (351)
Q Consensus       308 ~t-G~~pf~~~~~~~~~  323 (351)
                      +| |.+||.+.+..+.+
T Consensus       241 lt~g~p~~~~~~~~~~~  257 (311)
T d1t46a_         241 FSLGSSPYPGMPVDSKF  257 (311)
T ss_dssp             HTTTCCSSTTCCSSHHH
T ss_pred             HhCCCCCCCCCCHHHHH
Confidence            98 77777777665544

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=272.00  Aligned_cols=192  Identities=14%  Similarity=0.136  Sum_probs=156.9

Q ss_pred             ccccCcccceEEEEEEeecC---cEEEEEEecc--hhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEee-CCeEEE
Q psy2006           2 CSLNCVASNHVCTNVVYEVD---SVVALKIIKN--VEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDY-HGHMCI   75 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~---~~vAiK~~~~--~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~-~~~~~l   75 (351)
                      ++||+|+||+||+|++..++   ..||||+++.  .....+.+.+|+++|++++|+|      |+++++++.. ++.+++
T Consensus        33 ~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~Hpn------Iv~~~g~~~~~~~~~~l  106 (311)
T d1r0pa_          33 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPN------VLSLLGICLRSEGSPLV  106 (311)
T ss_dssp             EEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTT------BCCCCEEEEETTTEEEE
T ss_pred             eEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCC------EeEEeEEEEecCCceEE
Confidence            46999999999999976543   3699999964  2344577899999999999888      9999999765 468999


Q ss_pred             EEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeE
Q psy2006          76 AFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIR  154 (351)
Q Consensus        76 V~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~  154 (351)
                      ||||| +++|.+++.... ...++..+..++.|++.|                       |.|+|+.+++|||+|+.|+.
T Consensus       107 v~E~~~~g~l~~~~~~~~-~~~~~~~~~~i~~qia~g-----------------------L~~lH~~~iiHrDLK~~NIL  162 (311)
T d1r0pa_         107 VLPYMKHGDLRNFIRNET-HNPTVKDLIGFGLQVAKG-----------------------MKFLASKKFVHRDLAARNCM  162 (311)
T ss_dssp             EEECCTTCBHHHHHHCTT-CCCBHHHHHHHHHHHHHH-----------------------HHHHHHTTCCCSCCSGGGEE
T ss_pred             EEEEeecCchhhhhcccc-ccchHHHHHHHHHHHHHh-----------------------hhhhcccCcccCCccHHhEe
Confidence            99999 899999987654 356677777777777777                       99999999999999999998


Q ss_pred             EeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhcccc
Q psy2006         155 LIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQT  234 (351)
Q Consensus       155 l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~~  234 (351)
                      |.                                                                              
T Consensus       163 l~------------------------------------------------------------------------------  164 (311)
T d1r0pa_         163 LD------------------------------------------------------------------------------  164 (311)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             EC------------------------------------------------------------------------------
Confidence            86                                                                              


Q ss_pred             hhhhhhccchhhhhhhccccceeeeccCCcceecc-------ccccccccceeeCceeeecCCCCCccceeeeeeeeEee
Q psy2006         235 QADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-------HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFEL  307 (351)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l  307 (351)
                                       ....+||+|||+++....       ......||+.|+|||.+....++.++||||||+++||+
T Consensus       165 -----------------~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El  227 (311)
T d1r0pa_         165 -----------------EKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWEL  227 (311)
T ss_dssp             -----------------TTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             -----------------CCCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCChhHhhhhHHHHHHH
Confidence                             235789999999875221       12235688999999999999999999999999999999


Q ss_pred             ccccccccccC
Q psy2006         308 YLGITLMARKT  318 (351)
Q Consensus       308 ~tG~~pf~~~~  318 (351)
                      +||..||....
T Consensus       228 ~t~~~p~~~~~  238 (311)
T d1r0pa_         228 MTRGAPPYPDV  238 (311)
T ss_dssp             HTTSCCSCC--
T ss_pred             HHCCCCCCCCC
Confidence            99777776543

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=274.34  Aligned_cols=206  Identities=16%  Similarity=0.180  Sum_probs=161.6

Q ss_pred             ccccCcccceEEEEEEee-----cCcEEEEEEecch--hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYE-----VDSVVALKIIKNV--EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-----~~~~vAiK~~~~~--~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++||+|+||+||+|.+..     +++.||||+++..  ......+.+|+++++++.|+|      |+++++++..+++.+
T Consensus        26 ~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~n------Iv~~~~~~~~~~~~~   99 (308)
T d1p4oa_          26 RELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHH------VVRLLGVVSQGQPTL   99 (308)
T ss_dssp             EEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTT------BCCEEEEECSSSSCE
T ss_pred             eEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCC------EeeeeeEEecCCcee
Confidence            579999999999999863     4679999999753  233456789999999999887      999999999999999


Q ss_pred             EEEecc-CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCe
Q psy2006          75 IAFEIL-GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDI  153 (351)
Q Consensus        75 lV~E~~-g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni  153 (351)
                      +||||| +|+|.+++......               .........++...+..++.|++.||.|||+++++|||+|+.|+
T Consensus       100 lv~e~~~~g~l~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~Ni  164 (308)
T d1p4oa_         100 VIMELMTRGDLKSYLRSLRPA---------------MANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNC  164 (308)
T ss_dssp             EEEECCTTCBHHHHHHHHHHH---------------HHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGE
T ss_pred             EEEeecCCCCHHHHHHhcccc---------------cccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCce
Confidence            999999 99999998754210               00001111234444444555555559999999999999999999


Q ss_pred             EEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhhccc
Q psy2006         154 RLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRVHAQ  233 (351)
Q Consensus       154 ~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~~~~  233 (351)
                      .+.                                                                             
T Consensus       165 Lld-----------------------------------------------------------------------------  167 (308)
T d1p4oa_         165 MVA-----------------------------------------------------------------------------  167 (308)
T ss_dssp             EEC-----------------------------------------------------------------------------
T ss_pred             eec-----------------------------------------------------------------------------
Confidence            876                                                                             


Q ss_pred             chhhhhhccchhhhhhhccccceeeeccCCcceecc-----ccccccccceeeCceeeecCCCCCccceeeeeeeeEeec
Q psy2006         234 TQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELY  308 (351)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~-----~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~  308 (351)
                                        ....+||+|||++.....     ......||+.|+|||.+.+..++.++|+|||||++|+|+
T Consensus       168 ------------------~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~  229 (308)
T d1p4oa_         168 ------------------EDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIA  229 (308)
T ss_dssp             ------------------TTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred             ------------------CCceEEEeecccceeccCCcceeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHH
Confidence                              245799999999875322     234457899999999999999999999999999999999


Q ss_pred             cc-cccccccCCCcee
Q psy2006         309 LG-ITLMARKTKTKYF  323 (351)
Q Consensus       309 tG-~~pf~~~~~~~~~  323 (351)
                      || .+||.+.+..+++
T Consensus       230 t~~~~p~~~~~~~~~~  245 (308)
T d1p4oa_         230 TLAEQPYQGLSNEQVL  245 (308)
T ss_dssp             HTSCCTTTTSCHHHHH
T ss_pred             hCCCCCCCCCCHHHHH
Confidence            98 5888887766655

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-34  Score=268.36  Aligned_cols=207  Identities=28%  Similarity=0.430  Sum_probs=167.8

Q ss_pred             CccccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCC-----CCcceeeeeeeEeeCC--eE
Q psy2006           1 MCSLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPN-----GRHLCVKMLDWFDYHG--HM   73 (351)
Q Consensus         1 ~~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~-----g~~~Iv~l~~~f~~~~--~~   73 (351)
                      +++||+|+||+||+|+++.+|+.||||++++.....+...+|+++|+.+.|.+.-     |+.||+++++++...+  ..
T Consensus        18 ~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~   97 (362)
T d1q8ya_          18 VRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGV   97 (362)
T ss_dssp             EEEEEECSSEEEEEEEETTTTEEEEEEEECSCHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEE
T ss_pred             EEEEeeCCCeEEEEEEECCCCCEEEEEEEeccccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccce
Confidence            3689999999999999999999999999987666667788999999999875532     5667999999987543  56


Q ss_pred             EEEEecc--CCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc-ccccccccCC
Q psy2006          74 CIAFEIL--GLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK-KKREVRRVRR  150 (351)
Q Consensus        74 ~lV~E~~--g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~-~~i~h~d~k~  150 (351)
                      ++|++++  +++............+++..++.++.|++.|                       |+|||+ .||+|||+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~a-----------------------l~~lh~~~~IvHrDlKp  154 (362)
T d1q8ya_          98 HVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLG-----------------------LDYMHRRCGIIHTDIKP  154 (362)
T ss_dssp             EEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHH-----------------------HHHHHHTTCEECSCCSG
T ss_pred             eeeeeecccccccccccccccccCCcHHHHHHHHHHHHHH-----------------------HHHHhhhcCcccccCCh
Confidence            6666655  5566666666666678888888888888888                       999997 8999999999


Q ss_pred             CCeEEeecCCcccCCCCcccccCCCCccCCccccCCChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCchhhh
Q psy2006         151 CDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMASDDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSSVRV  230 (351)
Q Consensus       151 ~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~~~~  230 (351)
                      +||++..-|..                                                                     
T Consensus       155 ~NIll~~~~~~---------------------------------------------------------------------  165 (362)
T d1q8ya_         155 ENVLMEIVDSP---------------------------------------------------------------------  165 (362)
T ss_dssp             GGEEEEEEETT---------------------------------------------------------------------
T ss_pred             hHeeeeccCcc---------------------------------------------------------------------
Confidence            99988621100                                                                     


Q ss_pred             cccchhhhhhccchhhhhhhccccceeeeccCCcceeccccccccccceeeCceeeecCCCCCccceeeeeeeeEeeccc
Q psy2006         231 HAQTQADRILSSVSSLVMRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPEVILELGWAQPCDVWSIGCIIFELYLG  310 (351)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~vkl~dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~~l~~l~tG  310 (351)
                                          .....++++|||.+..........+||+.|+|||++.+..++.++|+||+||++++|++|
T Consensus       166 --------------------~~~~~~kl~dfg~s~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g  225 (362)
T d1q8ya_         166 --------------------ENLIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITG  225 (362)
T ss_dssp             --------------------TTEEEEEECCCTTCEETTBCCCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHS
T ss_pred             --------------------cccceeeEeecccccccccccccccccccccChhhccccCCCccccccchHHHHHHHHHC
Confidence                                023468999999998777677788999999999999999999999999999999999999


Q ss_pred             cccccccCC
Q psy2006         311 ITLMARKTK  319 (351)
Q Consensus       311 ~~pf~~~~~  319 (351)
                      +.||.....
T Consensus       226 ~~pF~~~~~  234 (362)
T d1q8ya_         226 DFLFEPDEG  234 (362)
T ss_dssp             SCCC-----
T ss_pred             CCCCCCCcc
Confidence            999987654

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.82  E-value=1.3e-21  Score=165.37  Aligned_cols=113  Identities=13%  Similarity=0.064  Sum_probs=85.0

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecchh-------------------hhhHHHHHHHHHHHHhCCCCCCCCcceee
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNVE-------------------KYREAARLEINALQKIGEKDPNGRHLCVK   62 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~-------------------~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~   62 (351)
                      ++||+|+||+||+|++ .+|+.||||++....                   ........|...+.++.+.+      ++.
T Consensus         6 ~~IG~G~~g~Vy~a~~-~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~------v~~   78 (191)
T d1zara2           6 KLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLA------VPK   78 (191)
T ss_dssp             EEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSS------SCC
T ss_pred             CEeeeCcceEEEEEEC-CCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCC------cce
Confidence            5799999999999998 578999999975321                   01123456889999998766      887


Q ss_pred             eeeeEeeCCeEEEEEeccCCCHHHHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccc
Q psy2006          63 MLDWFDYHGHMCIAFEILGLSVFDFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKK  142 (351)
Q Consensus        63 l~~~f~~~~~~~lV~E~~g~sL~~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~  142 (351)
                      .+++..    .++||||+++....        .+++..++.++.|++.+                       +.|||++|
T Consensus        79 ~~~~~~----~~lvme~~~~~~~~--------~l~~~~~~~i~~ql~~~-----------------------l~~lH~~g  123 (191)
T d1zara2          79 VYAWEG----NAVLMELIDAKELY--------RVRVENPDEVLDMILEE-----------------------VAKFYHRG  123 (191)
T ss_dssp             EEEEET----TEEEEECCCCEEGG--------GCCCSCHHHHHHHHHHH-----------------------HHHHHHTT
T ss_pred             EEEecC----CEEEEEeecccccc--------chhhHHHHHHHHHHHHH-----------------------HHHHhhCC
Confidence            776532    37999999543211        24455566777777777                       99999999


Q ss_pred             ccccccCCCCeEEe
Q psy2006         143 REVRRVRRCDIRLI  156 (351)
Q Consensus       143 i~h~d~k~~ni~l~  156 (351)
                      ++|||+||+|+.+.
T Consensus       124 iiHrDiKP~NILv~  137 (191)
T d1zara2         124 IVHGDLSQYNVLVS  137 (191)
T ss_dssp             EECSCCSTTSEEEE
T ss_pred             EEEccCChhheeee
Confidence            99999999999887

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1e-10  Score=102.82  Aligned_cols=104  Identities=19%  Similarity=0.318  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhhhcC--CCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCC-CcccccCCCCc
Q psy2006         101 VRHMSYQLIYAKENN--YLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE-HHSTIVSTRHY  177 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~-~~~~~~~~~~~  177 (351)
                      ++.++..+..-|.++  +.|.+...                 .+|+. +-+.++++|+|||+|+.... ...+.+||+.|
T Consensus       118 ~~qi~~gl~yLH~~~~~IiHrDiKp-----------------~NILl-~~~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y  179 (270)
T d1t4ha_         118 CRQILKGLQFLHTRTPPIIHRDLKC-----------------DNIFI-TGPTGSVKIGDLGLATLKRASFAKAVIGTPEF  179 (270)
T ss_dssp             HHHHHHHHHHHHTSSSCCCCSCCCG-----------------GGEEE-SSTTSCEEECCTTGGGGCCTTSBEESCSSCCC
T ss_pred             HHHHHHHHHHHHHCCCCEEeCCcCh-----------------hhcee-eCCCCCEEEeecCcceeccCCccCCcccCccc
Confidence            566677776665555  44443211                 23332 22346799999999986443 34567899999


Q ss_pred             cCCccccCCC----------------------------------------------hhhHHHHHHHHHHhhccCCCCCCC
Q psy2006         178 RAPERYMASD----------------------------------------------DEEHRQLFDLISKMLEYEPSERIS  211 (351)
Q Consensus       178 ~~pe~~~~~~----------------------------------------------~~~~~~~~~~i~~~L~~~p~~R~t  211 (351)
                      +|||.+....                                              ...++++.++|.+||..||++|||
T Consensus       180 ~aPE~~~~~~~~~~DIwSlGvilyel~~g~~Pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~li~~~l~~dp~~R~s  259 (270)
T d1t4ha_         180 MAPEMYEEKYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKPASFDKVAIPEVKEIIEGCIRQNKDERYS  259 (270)
T ss_dssp             CCGGGGGTCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCCGGGGGCCCHHHHHHHHHHSCSSGGGSCC
T ss_pred             cCHHHhCCCCCCcCchhhHHHHHHHHHHCCCCCCCcccHHHHHHHHHcCCCCcccCccCCHHHHHHHHHHccCCHhHCcC
Confidence            9999653210                                              012356889999999999999999


Q ss_pred             hhhhhcCCCCC
Q psy2006         212 LSEALRHPFFD  222 (351)
Q Consensus       212 ~~e~l~~~~~~  222 (351)
                      ++|+|+||||+
T Consensus       260 ~~ell~Hp~fk  270 (270)
T d1t4ha_         260 IKDLLNHAFFQ  270 (270)
T ss_dssp             HHHHHTSGGGC
T ss_pred             HHHHhCCcccC
Confidence            99999999985

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.1e-10  Score=102.67  Aligned_cols=105  Identities=19%  Similarity=0.314  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC-----CCcccccCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD-----EHHSTIVST  174 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~-----~~~~~~~~~  174 (351)
                      .++.++..+...|.+++.|.+...                 .+|+..  ..++++|+|||+|+...     ......+||
T Consensus       108 i~~qi~~al~ylH~~~IiHrDiKp-----------------~NILl~--~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT  168 (271)
T d1nvra_         108 FFHQLMAGVVYLHGIGITHRDIKP-----------------ENLLLD--ERDNLKISDFGLATVFRYNNRERLLNKMCGT  168 (271)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCCG-----------------GGEEEC--TTCCEEECCCTTCEECEETTEECCBCCCCSC
T ss_pred             HHHHHHHHHHHHHHcCCccCcccH-----------------HHEEEC--CCCCEEEccchhheeeccCCccccccceeeC
Confidence            356677777766555554444222                 222221  24679999999997532     223456899


Q ss_pred             CCccCCccccCCC------------------------------------------------hhhHHHHHHHHHHhhccCC
Q psy2006         175 RHYRAPERYMASD------------------------------------------------DEEHRQLFDLISKMLEYEP  206 (351)
Q Consensus       175 ~~~~~pe~~~~~~------------------------------------------------~~~~~~~~~~i~~~L~~~p  206 (351)
                      +.|+|||.+....                                                ...++++.++|.+||..||
T Consensus       169 ~~Y~APE~~~~~~~~~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP  248 (271)
T d1nvra_         169 LPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNPWKKIDSAPLALLHKILVENP  248 (271)
T ss_dssp             GGGSCTHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSSTTSHHHHHHHTTCTTSTTGGGSCHHHHHHHHHHSCSST
T ss_pred             cCccCHhHhcCCCCCCCceeeeHhHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCCCccccCCHHHHHHHHHHcCCCh
Confidence            9999999543220                                                1224678899999999999


Q ss_pred             CCCCChhhhhcCCCCCC
Q psy2006         207 SERISLSEALRHPFFDK  223 (351)
Q Consensus       207 ~~R~t~~e~l~~~~~~~  223 (351)
                      .+|||++|+|+||||+.
T Consensus       249 ~~R~t~~eil~hpwf~~  265 (271)
T d1nvra_         249 SARITIPDIKKDRWYNK  265 (271)
T ss_dssp             TTSCCHHHHTTCTTTTC
T ss_pred             hHCcCHHHHhcCHhhCc
Confidence            99999999999999964

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.00  E-value=1.3e-10  Score=106.08  Aligned_cols=110  Identities=25%  Similarity=0.385  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC--CCcccccCCCCc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHY  177 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~  177 (351)
                      .++.++..|..-|.+++.|.+...                 .+|+...-..+.++|+|||+|+...  .......||+.|
T Consensus       129 i~~qi~~aL~ylH~~~iiHrDiKp-----------------~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y  191 (350)
T d1koaa2         129 YMRQVCKGLCHMHENNYVHLDLKP-----------------ENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEF  191 (350)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCG-----------------GGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTT
T ss_pred             HHHHHHHHHHHHHhcCCeeeeech-----------------hHeeeccCCCCeEEEeecchheecccccccceecCcccc
Confidence            356666666666554444333111                 3343333345679999999997643  334457899999


Q ss_pred             cCCccccCCC------------------------------------------------hhhHHHHHHHHHHhhccCCCCC
Q psy2006         178 RAPERYMASD------------------------------------------------DEEHRQLFDLISKMLEYEPSER  209 (351)
Q Consensus       178 ~~pe~~~~~~------------------------------------------------~~~~~~~~~~i~~~L~~~p~~R  209 (351)
                      +|||.+....                                                ...++++.+||.+||..||.+|
T Consensus       192 ~aPEv~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  271 (350)
T d1koaa2         192 AAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGISEDGKDFIRKLLLADPNTR  271 (350)
T ss_dssp             CCHHHHHTCCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCCGGGGGCCHHHHHHHHHHCCSSGGGS
T ss_pred             cCHHHHcCCCCChhHhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHC
Confidence            9999543220                                                1124678899999999999999


Q ss_pred             CChhhhhcCCCCCCCCc
Q psy2006         210 ISLSEALRHPFFDKLPS  226 (351)
Q Consensus       210 ~t~~e~l~~~~~~~~~~  226 (351)
                      +|++|+|+||||+...+
T Consensus       272 ~t~~eil~hp~~~~~~~  288 (350)
T d1koaa2         272 MTIHQALEHPWLTPGNA  288 (350)
T ss_dssp             CCHHHHHHSTTTSCTTC
T ss_pred             cCHHHHhcCcccCCCCC
Confidence            99999999999987554

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=2.1e-10  Score=102.09  Aligned_cols=105  Identities=21%  Similarity=0.285  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC---CCCcccccCCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRH  176 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~---~~~~~~~~~~~~  176 (351)
                      .++.++..|..-|.+++.|.+...                 .+|+..  ..++++|+|||+|+..   .......+||+.
T Consensus       121 i~~qi~~aL~yLH~~~iiHrDiKp-----------------~NILl~--~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~  181 (293)
T d1yhwa1         121 VCRECLQALEFLHSNQVIHRDIKS-----------------DNILLG--MDGSVKLTDFGFCAQITPEQSKRSTMVGTPY  181 (293)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSG-----------------GGEEEC--TTCCEEECCCTTCEECCSTTCCBCCCCSCGG
T ss_pred             HHHHHHHHHHHHHHCCCcccCCcH-----------------HHeEEC--CCCcEeeccchhheeeccccccccccccCCC
Confidence            466777777776555554444221                 223321  3467999999999763   223455789999


Q ss_pred             ccCCccccCC-----------------------------------------------ChhhHHHHHHHHHHhhccCCCCC
Q psy2006         177 YRAPERYMAS-----------------------------------------------DDEEHRQLFDLISKMLEYEPSER  209 (351)
Q Consensus       177 ~~~pe~~~~~-----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R  209 (351)
                      |+|||.+...                                               ....++++.++|.+||..||.+|
T Consensus       182 Y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R  261 (293)
T d1yhwa1         182 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQNPEKLSAIFRDFLNRCLDMDVEKR  261 (293)
T ss_dssp             GCCHHHHSSSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCSSGGGSCHHHHHHHHHHTCSSTTTS
T ss_pred             ccChhhhcCCCCCchhceehHhHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCCCcccCCHHHHHHHHHHccCChhHC
Confidence            9999954322                                               01224678899999999999999


Q ss_pred             CChhhhhcCCCCCC
Q psy2006         210 ISLSEALRHPFFDK  223 (351)
Q Consensus       210 ~t~~e~l~~~~~~~  223 (351)
                      +|++|+|+||||+.
T Consensus       262 ~s~~eil~Hp~~~~  275 (293)
T d1yhwa1         262 GSAKELLQHQFLKI  275 (293)
T ss_dssp             CCHHHHTTCGGGGG
T ss_pred             cCHHHHhcCHhhCC
Confidence            99999999999964

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=2.3e-10  Score=102.51  Aligned_cols=109  Identities=22%  Similarity=0.295  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccccccccc-ccCCCCeEEeecCCcccCC--CCcccccCCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVR-RVRRCDIRLIDFGSATFDD--EHHSTIVSTRH  176 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~-d~k~~ni~l~Dfg~s~~~~--~~~~~~~~~~~  176 (351)
                      .++.++..+...|++++.|.+...                 .+++.. .-..++++|+|||+|+..+  ....+.+||+.
T Consensus       112 ~~~qi~~al~ylH~~~iiHrDiKp-----------------~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~  174 (307)
T d1a06a_         112 LIFQVLDAVKYLHDLGIVHRDLKP-----------------ENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPG  174 (307)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCG-----------------GGEEESSSSTTCCEEECCC------------------CT
T ss_pred             HHHHHHHHHHhhhhceeeeEEecc-----------------cceeecccCCCceEEEeccceeEEccCCCeeeeeeeCcc
Confidence            356677777776666665544221                 233322 2245679999999997643  33455789999


Q ss_pred             ccCCccccCC------------------------------------------------ChhhHHHHHHHHHHhhccCCCC
Q psy2006         177 YRAPERYMAS------------------------------------------------DDEEHRQLFDLISKMLEYEPSE  208 (351)
Q Consensus       177 ~~~pe~~~~~------------------------------------------------~~~~~~~~~~~i~~~L~~~p~~  208 (351)
                      |+|||.+...                                                ....++++.++|.+||..||.+
T Consensus       175 y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~  254 (307)
T d1a06a_         175 YVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPPFYDENDAKLFEQILKAEYEFDSPYWDDISDSAKDFIRHLMEKDPEK  254 (307)
T ss_dssp             TSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHTTCCCCCTTTTTTSCHHHHHHHHHHSCSSGGG
T ss_pred             ccCcHHHcCCCCCcHHHhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHhccCCCCCCccccCCCHHHHHHHHHHccCCHhH
Confidence            9999954322                                                0123467889999999999999


Q ss_pred             CCChhhhhcCCCCCCCC
Q psy2006         209 RISLSEALRHPFFDKLP  225 (351)
Q Consensus       209 R~t~~e~l~~~~~~~~~  225 (351)
                      |||++|+|+||||+...
T Consensus       255 R~s~~eil~hp~~~~~~  271 (307)
T d1a06a_         255 RFTCEQALQHPWIAGDT  271 (307)
T ss_dssp             SCCHHHHHHSTTTTSSC
T ss_pred             CcCHHHHhcCHhhCCCC
Confidence            99999999999997543

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.97  E-value=2.7e-10  Score=102.41  Aligned_cols=109  Identities=20%  Similarity=0.337  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccCC
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRAP  180 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~p  180 (351)
                      ++.++..+...|.+++.|.+.+.                 .+|+..  +.++++|+|||+|+.........+||+.|+||
T Consensus       110 ~~qi~~al~~lH~~~iiHrDiKp-----------------~NILl~--~~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~AP  170 (316)
T d1fota_         110 AAEVCLALEYLHSKDIIYRDLKP-----------------ENILLD--KNGHIKITDFGFAKYVPDVTYTLCGTPDYIAP  170 (316)
T ss_dssp             HHHHHHHHHHHHTTTEECCCCCG-----------------GGEEEC--TTSCEEECCCSSCEECSSCBCCCCSCTTTCCH
T ss_pred             HHHHHHhhhhhccCcEEccccCc-----------------hheeEc--CCCCEEEecCccceEeccccccccCcccccCH
Confidence            45666667666555554444222                 222221  35689999999999877777788999999999


Q ss_pred             ccccCC--------------------------------------------ChhhHHHHHHHHHHhhccCCCCCC-----C
Q psy2006         181 ERYMAS--------------------------------------------DDEEHRQLFDLISKMLEYEPSERI-----S  211 (351)
Q Consensus       181 e~~~~~--------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~-----t  211 (351)
                      |.+...                                            +...++++.++|.+||.+||.+|+     |
T Consensus       171 E~l~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t  250 (316)
T d1fota_         171 EVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNG  250 (316)
T ss_dssp             HHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTT
T ss_pred             HHHcCCCCCchhhccccchhHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHhccccchhh
Confidence            965432                                            112346788999999999999996     8


Q ss_pred             hhhhhcCCCCCCCCchh
Q psy2006         212 LSEALRHPFFDKLPSSV  228 (351)
Q Consensus       212 ~~e~l~~~~~~~~~~~~  228 (351)
                      ++++|+||||+...|..
T Consensus       251 ~~~il~Hp~f~~i~~~~  267 (316)
T d1fota_         251 TEDVKNHPWFKEVVWEK  267 (316)
T ss_dssp             THHHHTSGGGSSCCHHH
T ss_pred             HHHHHcCcccccCCHHH
Confidence            99999999999987753

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.5e-10  Score=101.38  Aligned_cols=104  Identities=23%  Similarity=0.388  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC-CCcccccCCCCcc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD-EHHSTIVSTRHYR  178 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~-~~~~~~~~~~~~~  178 (351)
                      .++.++..+...|.+++.|.+...                 .+++..  +.++++|+|||+|+... .......||+.|+
T Consensus       111 i~~qi~~al~~lH~~~ivHrDiKp-----------------~Nill~--~~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~  171 (263)
T d2j4za1         111 YITELANALSYCHSKRVIHRDIKP-----------------ENLLLG--SAGELKIADFGWSVHAPSSRRTTLCGTLDYL  171 (263)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCG-----------------GGEEEC--TTSCEEECCCCSCSCCCCCCCEETTEEGGGC
T ss_pred             HHHHHHHHHHHHHHCCeeeeeecc-----------------ccceec--CCCCEeecccceeeecCCCcccccCCCCccc
Confidence            356777777777666665555222                 222221  34679999999997754 3345578999999


Q ss_pred             CCccccCC--------------------------------------------ChhhHHHHHHHHHHhhccCCCCCCChhh
Q psy2006         179 APERYMAS--------------------------------------------DDEEHRQLFDLISKMLEYEPSERISLSE  214 (351)
Q Consensus       179 ~pe~~~~~--------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e  214 (351)
                      |||.+...                                            +...++++.++|.+||..||.+|||++|
T Consensus       172 APE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~e  251 (263)
T d2j4za1         172 PPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLRE  251 (263)
T ss_dssp             CHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHH
T ss_pred             CHHHHcCCCCCchhhhhhHhHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHH
Confidence            99965432                                            1123467889999999999999999999


Q ss_pred             hhcCCCCC
Q psy2006         215 ALRHPFFD  222 (351)
Q Consensus       215 ~l~~~~~~  222 (351)
                      +|+||||+
T Consensus       252 il~hp~~~  259 (263)
T d2j4za1         252 VLEHPWIT  259 (263)
T ss_dssp             HHTCHHHH
T ss_pred             HHcCcCcC
Confidence            99999984

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=2.8e-10  Score=103.80  Aligned_cols=80  Identities=21%  Similarity=0.273  Sum_probs=65.8

Q ss_pred             CCCeEEeecCCcccCCCCcccccCCCCccCCccccCC-------------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS-------------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~-------------------------------------------  186 (351)
                      .++++|+|||+|+..........||+.|+|||.+...                                           
T Consensus       177 ~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~~  256 (350)
T d1rdqe_         177 QGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVR  256 (350)
T ss_dssp             TSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCC
T ss_pred             CCCEEeeeceeeeecccccccccCccccCCHHHHcCCCCCccccccchhHHHHHHHhCCCCCCCcCHHHHHHHHhcCCCC
Confidence            4679999999999877777778999999999965432                                           


Q ss_pred             -ChhhHHHHHHHHHHhhccCCCCCC-----ChhhhhcCCCCCCCCchhh
Q psy2006         187 -DDEEHRQLFDLISKMLEYEPSERI-----SLSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       187 -~~~~~~~~~~~i~~~L~~~p~~R~-----t~~e~l~~~~~~~~~~~~~  229 (351)
                       +...++++.++|.+||..||.+|+     |++++++||||+...|...
T Consensus       257 ~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~~~~~~  305 (350)
T d1rdqe_         257 FPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATTDWIAI  305 (350)
T ss_dssp             CCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTCCHHHH
T ss_pred             CCccCCHHHHHHHHHHhhhCHHhccccccccHHHHHcCccccCCCHHHH
Confidence             112336788999999999999995     8999999999998876543

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1.6e-10  Score=101.78  Aligned_cols=108  Identities=21%  Similarity=0.289  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC-CCCcccccCCCCcc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD-DEHHSTIVSTRHYR  178 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~-~~~~~~~~~~~~~~  178 (351)
                      .++.++..+..-|.+++.|.+...                 .+|+ .+.+.+.++|+|||+|+.. ....++..||+.|+
T Consensus       115 ~~~qi~~al~~lH~~~iiHrDiKp-----------------~NIl-l~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~  176 (273)
T d1xwsa_         115 FFWQVLEAVRHCHNCGVLHRDIKD-----------------ENIL-IDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYS  176 (273)
T ss_dssp             HHHHHHHHHHHHHHTTEECSCCSG-----------------GGEE-EETTTTEEEECCCTTCEECCSSCBCCCCSCGGGS
T ss_pred             HHHHHHHHHHHHHHCCCccccCcc-----------------cceE-EecCCCeEEECccccceecccccccccccCCCcC
Confidence            356666666666555554444222                 2222 2223456899999999764 33455678999999


Q ss_pred             CCccccCC---------------------------------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCC
Q psy2006         179 APERYMAS---------------------------------------DDEEHRQLFDLISKMLEYEPSERISLSEALRHP  219 (351)
Q Consensus       179 ~pe~~~~~---------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~  219 (351)
                      |||.+...                                       ....++++.++|.+||..||.+|||++|+|+||
T Consensus       177 aPE~~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~i~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp  256 (273)
T d1xwsa_         177 PPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHP  256 (273)
T ss_dssp             CHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHHHHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSG
T ss_pred             CHHHHcCCCCCCcccccccceeeehhHhhCCCCCCCchHHhhcccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhcCH
Confidence            99954322                                       111246788999999999999999999999999


Q ss_pred             CCCCCC
Q psy2006         220 FFDKLP  225 (351)
Q Consensus       220 ~~~~~~  225 (351)
                      ||++..
T Consensus       257 ~~~~~~  262 (273)
T d1xwsa_         257 WMQDVL  262 (273)
T ss_dssp             GGSSCC
T ss_pred             hhCCCC
Confidence            998754

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=7.1e-10  Score=98.74  Aligned_cols=108  Identities=26%  Similarity=0.376  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCC---CcccccCCCCc
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRHY  177 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~---~~~~~~~~~~~  177 (351)
                      ++.++..|..-|.+++.|.+.+.                 .+|+.  -+.++++|+|||+|+....   .....+||+.|
T Consensus       106 ~~qil~aL~~lH~~~iiHrDiKp-----------------~NIli--~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y  166 (299)
T d1ua2a_         106 MLMTLQGLEYLHQHWILHRDLKP-----------------NNLLL--DENGVLKLADFGLAKSFGSPNRAYTHQVVTRWY  166 (299)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCCG-----------------GGEEE--CTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTT
T ss_pred             HHHHHHHHHHhhccceecccCCc-----------------ceEEe--cCCCccccccCccccccCCCcccccceecChhh
Confidence            45566666666666665555222                 22221  1456799999999976433   23456899999


Q ss_pred             cCCccccCCC----------------------------------------------------------------------
Q psy2006         178 RAPERYMASD----------------------------------------------------------------------  187 (351)
Q Consensus       178 ~~pe~~~~~~----------------------------------------------------------------------  187 (351)
                      +|||.+....                                                                      
T Consensus       167 ~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (299)
T d1ua2a_         167 RAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLH  246 (299)
T ss_dssp             CCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHH
T ss_pred             ccHHHHccCCCCChhhhhhhcchHHHHHHhCcCCCCCCCHHHHHHHHHHhcCCCChhhccchhccchhhhhccCCCCChH
Confidence            9999543110                                                                      


Q ss_pred             ---hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         188 ---DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       188 ---~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                         ...++++.+||.+||.+||.+|+|++|+|+||||+..+.+
T Consensus       247 ~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~p~p  289 (299)
T d1ua2a_         247 HIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGP  289 (299)
T ss_dssp             HHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCC
T ss_pred             HhcccCCHHHHHHHHHHccCChhhCcCHHHHhCCHhhCCCCCC
Confidence               0123578899999999999999999999999999876643

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=9.9e-10  Score=99.53  Aligned_cols=109  Identities=18%  Similarity=0.259  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC---CCCcccccCCCCc
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD---DEHHSTIVSTRHY  177 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~  177 (351)
                      +..++..|...|.+++.|.+...-                 +|+.  -+.++++|+|||+|+..   .......+||+.|
T Consensus       111 ~~qil~al~ylH~~~iiHRDlKP~-----------------NILl--~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y  171 (337)
T d1o6la_         111 GAEIVSALEYLHSRDVVYRDIKLE-----------------NLML--DKDGHIKITDFGLCKEGISDGATMKTFCGTPEY  171 (337)
T ss_dssp             HHHHHHHHHHHHHTTCBCCCCCGG-----------------GEEE--CTTSCEEECCCTTCBCSCCTTCCBCCCEECGGG
T ss_pred             HHHHhhhhhhhhhcCccccccCHH-----------------HeEe--cCCCCEEEeecccccccccCCcccccceeCHHH
Confidence            456666666665555544442222                 2222  13577999999999863   2334557899999


Q ss_pred             cCCccccCC--------------------------------------------ChhhHHHHHHHHHHhhccCCCCCCC--
Q psy2006         178 RAPERYMAS--------------------------------------------DDEEHRQLFDLISKMLEYEPSERIS--  211 (351)
Q Consensus       178 ~~pe~~~~~--------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~t--  211 (351)
                      +|||.+...                                            +...++++.+||.+||.+||.+|++  
T Consensus       172 ~aPE~~~~~~y~~~~DiwSlGvilyeml~G~~pf~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~  251 (337)
T d1o6la_         172 LAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGG  251 (337)
T ss_dssp             CCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCS
T ss_pred             hhhhhccCCCCChhhcccchhhHHHHHHHCCCCCCCcCHHHHHHHHhcCCCCCCccCCHHHHHHHHhhccCCchhhcccc
Confidence            999965432                                            1223467889999999999999995  


Q ss_pred             ---hhhhhcCCCCCCCCchh
Q psy2006         212 ---LSEALRHPFFDKLPSSV  228 (351)
Q Consensus       212 ---~~e~l~~~~~~~~~~~~  228 (351)
                         ++++++||||....|..
T Consensus       252 ~~~~~eil~Hp~f~~i~~~~  271 (337)
T d1o6la_         252 PSDAKEVMEHRFFLSINWQD  271 (337)
T ss_dssp             TTTHHHHHTSGGGTTCCHHH
T ss_pred             cccHHHHHcCcccccCCHHH
Confidence               89999999999877654

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=98.91  E-value=4.5e-10  Score=102.50  Aligned_cols=108  Identities=21%  Similarity=0.318  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCC--CcccccCCCCc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHY  177 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~--~~~~~~~~~~~  177 (351)
                      .++.++..|...|.+++.|.+...                 .+|+...-+.++++|+|||+|+....  ......||+.|
T Consensus       132 i~~qi~~aL~ylH~~~iiHRDiKp-----------------~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y  194 (352)
T d1koba_         132 YMRQACEGLKHMHEHSIVHLDIKP-----------------ENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEF  194 (352)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCG-----------------GGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGG
T ss_pred             HHHHHHHHHHHHHHCCeeeccccc-----------------ccccccccCCCeEEEeecccceecCCCCceeeccCcccc
Confidence            356666667666555554444211                 33443333467899999999976433  34457899999


Q ss_pred             cCCccccCC------------------------------------------------ChhhHHHHHHHHHHhhccCCCCC
Q psy2006         178 RAPERYMAS------------------------------------------------DDEEHRQLFDLISKMLEYEPSER  209 (351)
Q Consensus       178 ~~pe~~~~~------------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R  209 (351)
                      +|||.+...                                                ....++++.+||.+||.+||.+|
T Consensus       195 ~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R  274 (352)
T d1koba_         195 AAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSVSPEAKDFIKNLLQKEPRKR  274 (352)
T ss_dssp             CCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTSCHHHHHHHHTTSCSSGGGS
T ss_pred             cCHHHHcCCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcccccCCCHHHHHHHHHHccCChhHC
Confidence            999954322                                                01234678899999999999999


Q ss_pred             CChhhhhcCCCCCCC
Q psy2006         210 ISLSEALRHPFFDKL  224 (351)
Q Consensus       210 ~t~~e~l~~~~~~~~  224 (351)
                      +|++|+|+||||+..
T Consensus       275 ~s~~eil~Hp~~~~~  289 (352)
T d1koba_         275 LTVHDALEHPWLKGD  289 (352)
T ss_dssp             CCHHHHHTSTTTSSC
T ss_pred             cCHHHHhcCHhhCCC
Confidence            999999999999764

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.90  E-value=3.3e-10  Score=103.86  Aligned_cols=111  Identities=20%  Similarity=0.215  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC-CCCcccccCCCCcc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD-DEHHSTIVSTRHYR  178 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~-~~~~~~~~~~~~~~  178 (351)
                      .++.++..|...|.+++.|.+...                 .+|+.  -..++++|+|||+|+.. ........||+.|+
T Consensus       112 ~~~qi~~aL~ylH~~~iiHrDlKP-----------------~NILl--~~~g~iKl~DFGla~~~~~~~~~~~~GT~~y~  172 (364)
T d1omwa3         112 YAAEIILGLEHMHNRFVVYRDLKP-----------------ANILL--DEHGHVRISDLGLACDFSKKKPHASVGTHGYM  172 (364)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSG-----------------GGEEE--CSSSCEEECCCTTCEECSSSCCCSCCSCGGGC
T ss_pred             HHHHHHHHHHHHHHCCccceeecc-----------------ceeEE--cCCCcEEEeeeceeeecCCCcccccccccccc
Confidence            355666667666555554444222                 22222  13567999999999764 44455678999999


Q ss_pred             CCccccCC------------------------------------------------ChhhHHHHHHHHHHhhccCCCCCC
Q psy2006         179 APERYMAS------------------------------------------------DDEEHRQLFDLISKMLEYEPSERI  210 (351)
Q Consensus       179 ~pe~~~~~------------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~  210 (351)
                      |||.+...                                                +...++++.++|.+||..||.+|+
T Consensus       173 APE~~~~~~~~~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~  252 (364)
T d1omwa3         173 APEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRL  252 (364)
T ss_dssp             CHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCSSCSSCSSCHHHHHHHSSSCCCCCCSSSCHHHHHHHHHHTCSSTTTST
T ss_pred             hhHHhhcCCCCCcccchhHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHHHcccCHHHhC
Confidence            99965321                                                112346788999999999999999


Q ss_pred             C-----hhhhhcCCCCCCCCchhh
Q psy2006         211 S-----LSEALRHPFFDKLPSSVR  229 (351)
Q Consensus       211 t-----~~e~l~~~~~~~~~~~~~  229 (351)
                      |     ++++++||||+...|..-
T Consensus       253 t~~~~~a~eil~Hp~f~~i~~~~~  276 (364)
T d1omwa3         253 GCLGRGAQEVKESPFFRSLDWQMV  276 (364)
T ss_dssp             TTSSSTHHHHHTSGGGTTCCHHHH
T ss_pred             CCcccCHHHHHcCccccCCCHHHH
Confidence            9     799999999999877543

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.2e-09  Score=97.48  Aligned_cols=107  Identities=29%  Similarity=0.402  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCC--CCcccccCCCCc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDD--EHHSTIVSTRHY  177 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~  177 (351)
                      .++.++..|..-|.+++.|.+...-                 +|+..  ..++++|+|||+++...  .......||+.|
T Consensus       121 ~~~qi~~aL~yLH~~~ivHrDiKp~-----------------NILi~--~~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y  181 (305)
T d1blxa_         121 MMFQLLRGLDFLHSHRVVHRDLKPQ-----------------NILVT--SSGQIKLADFGLARIYSFQMALTSVVVTLWY  181 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGG-----------------GEEEC--TTCCEEECSCCSCCCCCGGGGGCCCCCCCTT
T ss_pred             HHHHHHHHHHHHHhCCEEecCCCcc-----------------EEEEc--CCCCeeecchhhhhhhcccccCCCcccChhh
Confidence            4566777777766666655553322                 22221  34679999999997643  334557899999


Q ss_pred             cCCccccCCC----------------------------------------------------------------------
Q psy2006         178 RAPERYMASD----------------------------------------------------------------------  187 (351)
Q Consensus       178 ~~pe~~~~~~----------------------------------------------------------------------  187 (351)
                      +|||.+....                                                                      
T Consensus       182 ~APE~~~~~~y~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (305)
T d1blxa_         182 RAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKF  261 (305)
T ss_dssp             CCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGT
T ss_pred             cCcchhcCCCCChhehhhchHHHHHHHHHCCCCCCCCCHHHHHHHHHHhhCCCchhcccccccchhhhhccccccchhhc
Confidence            9999543210                                                                      


Q ss_pred             -hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 -DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 -~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                       ...++.+.+||.+||.+||.+|+|++|+|+||||+.+.
T Consensus       262 ~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i~  300 (305)
T d1blxa_         262 VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLE  300 (305)
T ss_dssp             CCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCC
T ss_pred             cccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCch
Confidence             01235678999999999999999999999999998764

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.5e-09  Score=98.61  Aligned_cols=108  Identities=30%  Similarity=0.482  Sum_probs=77.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRA  179 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~  179 (351)
                      .++.++..|..-|.+++.|.+...                 .+|+-  -+.++++++|||+|+..+...+...||+.|+|
T Consensus       126 ~~~qi~~aL~~LH~~~IiHrDiKp-----------------~NIL~--~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~a  186 (346)
T d1cm8a_         126 LVYQMLKGLRYIHAAGIIHRDLKP-----------------GNLAV--NEDCELKILDFGLARQADSEMTGYVVTRWYRA  186 (346)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCCG-----------------GGEEE--CTTCCEEECCCTTCEECCSSCCSSCSCGGGCC
T ss_pred             HHHHHHHHHHHHHhCCCcccccCc-----------------chhhc--ccccccccccccceeccCCccccccccccccC
Confidence            356666666666555554444222                 12221  24567999999999998888888999999999


Q ss_pred             CccccCCC------------------------------------------------------------------------
Q psy2006         180 PERYMASD------------------------------------------------------------------------  187 (351)
Q Consensus       180 pe~~~~~~------------------------------------------------------------------------  187 (351)
                      ||.+....                                                                        
T Consensus       187 PE~~~~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (346)
T d1cm8a_         187 PEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKKDF  266 (346)
T ss_dssp             THHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCCCCG
T ss_pred             HHHHcCCCCCCccchhhcchHHHHHHHHCcCCCCCCChHHHHHHHHhccCCCcHHHHhhhcchhhhhhhccCCcccccch
Confidence            99653210                                                                        


Q ss_pred             ----hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         188 ----DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       188 ----~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                          ...++++.+||.+||.+||.+|+|++|+|+||||+....
T Consensus       267 ~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~~  309 (346)
T d1cm8a_         267 ASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHD  309 (346)
T ss_dssp             GGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-
T ss_pred             HHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCCC
Confidence                011356789999999999999999999999999987653

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6.4e-10  Score=98.62  Aligned_cols=105  Identities=24%  Similarity=0.339  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCC---CcccccCCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE---HHSTIVSTRH  176 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~---~~~~~~~~~~  176 (351)
                      .++.++..|...|++++.|.+...                 .+|+..  ..++++|+|||+|+....   ...+..||+.
T Consensus       115 i~~qi~~gL~ylH~~~ivHrDiKp-----------------~NIll~--~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~  175 (288)
T d2jfla1         115 VCKQTLDALNYLHDNKIIHRDLKA-----------------GNILFT--LDGDIKLADFGVSAKNTRTIQRRDSFIGTPY  175 (288)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSG-----------------GGEEEC--TTSCEEECCCTTCEECHHHHHHHTCCCSCCT
T ss_pred             HHHHHHHHHHHHHHCCEEEeecCh-----------------hheeEC--CCCCEEEEechhhhccCCCcccccccccccc
Confidence            356677777766555554444222                 222221  346799999999976332   2345789999


Q ss_pred             ccCCccccCC----------------------------------------------------ChhhHHHHHHHHHHhhcc
Q psy2006         177 YRAPERYMAS----------------------------------------------------DDEEHRQLFDLISKMLEY  204 (351)
Q Consensus       177 ~~~pe~~~~~----------------------------------------------------~~~~~~~~~~~i~~~L~~  204 (351)
                      |+|||.+...                                                    ....++++.++|.+||..
T Consensus       176 y~APE~l~~~~~~~~~y~~k~DiwSlGvilyemltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~s~~~~~li~~~L~~  255 (288)
T d2jfla1         176 WMAPEVVMCETSKDRPYDYKADVWSLGITLIEMAEIEPPHHELNPMRVLLKIAKSEPPTLAQPSRWSSNFKDFLKKCLEK  255 (288)
T ss_dssp             TCCHHHHTTCSTTTSSTTTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHHSCCCCCSSGGGSCHHHHHHHHHHSCS
T ss_pred             cCCHHHHhhcccCCCCCChhhhHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCccccCCHHHHHHHHHHccC
Confidence            9999965311                                                    012246788999999999


Q ss_pred             CCCCCCChhhhhcCCCCCC
Q psy2006         205 EPSERISLSEALRHPFFDK  223 (351)
Q Consensus       205 ~p~~R~t~~e~l~~~~~~~  223 (351)
                      ||.+|+|++|+|+||||+.
T Consensus       256 dp~~R~t~~ell~hp~~~~  274 (288)
T d2jfla1         256 NVDARWTTSQLLQHPFVTV  274 (288)
T ss_dssp             STTTSCCHHHHTTSGGGCC
T ss_pred             ChhHCcCHHHHhcCcccCC
Confidence            9999999999999999975

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=98.81  E-value=1.1e-09  Score=98.73  Aligned_cols=35  Identities=29%  Similarity=0.683  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      +++.+||.+||.+||.+|+|++|+|+||||+...+
T Consensus       293 ~~~~dli~~mL~~dP~~R~ta~e~L~Hp~F~~v~~  327 (328)
T d3bqca1         293 PEALDFLDKLLRYDHQSRLTAREAMEHPYFYTVVK  327 (328)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTSCC
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCC
Confidence            56789999999999999999999999999987654

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=2.8e-10  Score=102.62  Aligned_cols=32  Identities=28%  Similarity=0.538  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                      .++.+||.+||.+||.+|+|++|+|+||||+.
T Consensus       272 ~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~  303 (322)
T d1s9ja_         272 LEFQDFVNKCLIKNPAERADLKQLMVHAFIKR  303 (322)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHH
T ss_pred             HHHHHHHHHHcCCChhHCcCHHHHhhCHhhCc
Confidence            56889999999999999999999999999854

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=8.2e-10  Score=97.89  Aligned_cols=78  Identities=26%  Similarity=0.460  Sum_probs=58.2

Q ss_pred             CCCeEEeecCCcccCCC-----CcccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE-----HHSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~-----~~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      .++++|+|||+|+....     .....+||+.|+|||.+...                                      
T Consensus       144 ~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~  223 (288)
T d1uu3a_         144 DMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEYLIFQKII  223 (288)
T ss_dssp             TSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             CceEEecccccceecccCCcccccccccCCccccCceeeccCCCCcccceehhhHHHHHHhhCCCCCCCcCHHHHHHHHH
Confidence            46799999999976322     23446899999999954322                                      


Q ss_pred             ------ChhhHHHHHHHHHHhhccCCCCCCChhh------hhcCCCCCCCCch
Q psy2006         187 ------DDEEHRQLFDLISKMLEYEPSERISLSE------ALRHPFFDKLPSS  227 (351)
Q Consensus       187 ------~~~~~~~~~~~i~~~L~~~p~~R~t~~e------~l~~~~~~~~~~~  227 (351)
                            +...++++.++|.+||..||.+|+|++|      +++||||+...|.
T Consensus       224 ~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i~w~  276 (288)
T d1uu3a_         224 KLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVTWE  276 (288)
T ss_dssp             TTCCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTCCCT
T ss_pred             cCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCCCHH
Confidence                  1223467889999999999999999988      4789999887764

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=9.6e-10  Score=98.45  Aligned_cols=105  Identities=20%  Similarity=0.234  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRA  179 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~  179 (351)
                      .++.++..|..-|.+++.|.+...-                 +|+..  +.++++|+|||+|+.... .....||+.|+|
T Consensus       120 i~~qi~~aL~yLH~~~iiHrDiKp~-----------------NILl~--~~~~~Kl~DFG~a~~~~~-~~~~~GT~~Y~A  179 (309)
T d1u5ra_         120 VTHGALQGLAYLHSHNMIHRDVKAG-----------------NILLS--EPGLVKLGDFGSASIMAP-ANSFVGTPYWMA  179 (309)
T ss_dssp             HHHHHHHHHHHHHHTTCBCCCCSGG-----------------GEEEE--TTTEEEECCCTTCBSSSS-BCCCCSCGGGCC
T ss_pred             HHHHHHHHHHHHHhCCEeccCCCcc-----------------eEEEC--CCCCEEEeecccccccCC-CCccccCccccC
Confidence            3566777777766666655553332                 22221  346799999999987544 345689999999


Q ss_pred             CccccCC-------------------------------------------------ChhhHHHHHHHHHHhhccCCCCCC
Q psy2006         180 PERYMAS-------------------------------------------------DDEEHRQLFDLISKMLEYEPSERI  210 (351)
Q Consensus       180 pe~~~~~-------------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~  210 (351)
                      ||.+...                                                 ...-++++.+||.+||..||.+||
T Consensus       180 PE~~~~~~~~~y~~~~DiwSlGvilyel~~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rp  259 (309)
T d1u5ra_         180 PEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPALQSGHWSEYFRNFVDSCLQKIPQDRP  259 (309)
T ss_dssp             HHHHTTTTSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCSCTTSCHHHHHHHHHHTCSSGGGSC
T ss_pred             HHHHhccCCCCcCchhhhhhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHCcCChhHCc
Confidence            9965321                                                 011236788999999999999999


Q ss_pred             ChhhhhcCCCCCCC
Q psy2006         211 SLSEALRHPFFDKL  224 (351)
Q Consensus       211 t~~e~l~~~~~~~~  224 (351)
                      |++++|+||||...
T Consensus       260 t~~ell~Hp~~~~~  273 (309)
T d1u5ra_         260 TSEVLLKHRFVLRE  273 (309)
T ss_dssp             CHHHHTTCHHHHSC
T ss_pred             CHHHHHhCHHhcCC
Confidence            99999999999653

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=6.5e-10  Score=97.55  Aligned_cols=72  Identities=26%  Similarity=0.412  Sum_probs=53.2

Q ss_pred             CCCeEEeecCCcccCCC---CcccccCCCCccCCccccCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDE---HHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~---~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      .++++|+|||+|+....   ......||+.|+|||.+...                                        
T Consensus       150 ~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~~~~~~~~i~~~  229 (269)
T d2java1         150 KQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREG  229 (269)
T ss_dssp             TSCEEECCHHHHHHC-----------CCCSCCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHT
T ss_pred             CCcEEEeeccceeecccCCCccccCCCCcccCCHHHHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCCHHHHHHHHHcC
Confidence            57799999999976322   23457899999999955322                                        


Q ss_pred             -----ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCC
Q psy2006         187 -----DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFF  221 (351)
Q Consensus       187 -----~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~  221 (351)
                           +..-++++.++|.+||..||.+|||++|+|+|||+
T Consensus       230 ~~~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         230 KFRRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             CCCCCCcccCHHHHHHHHHHcCCChhHCcCHHHHHhCCcC
Confidence                 11224678899999999999999999999999995

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=3.3e-09  Score=95.91  Aligned_cols=74  Identities=28%  Similarity=0.427  Sum_probs=58.1

Q ss_pred             CCCeEEeecCCcccC--CCCcccccCCCCccCCccccCC-----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFD--DEHHSTIVSTRHYRAPERYMAS-----------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~--~~~~~~~~~~~~~~~pe~~~~~-----------------------------------------  186 (351)
                      .+.++|+|||+|+..  ........||+.|+|||.+...                                         
T Consensus       150 ~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~~~~~~~~i  229 (335)
T d2ozaa1         150 NAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRI  229 (335)
T ss_dssp             TCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCCGGGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------CC
T ss_pred             cccccccccceeeeccCCCccccccCCcccCCcHHHcCCCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHHHHHHHHHH
Confidence            456899999999753  3344557899999999954311                                         


Q ss_pred             -------C----hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         187 -------D----DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       187 -------~----~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                             +    ...++++.+||.+||.+||.+|+|+.|+|+||||..
T Consensus       230 ~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~  277 (335)
T d2ozaa1         230 RMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ  277 (335)
T ss_dssp             CSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHSHHHHT
T ss_pred             hcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHhhC
Confidence                   0    122467899999999999999999999999999954

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.9e-09  Score=95.68  Aligned_cols=77  Identities=26%  Similarity=0.456  Sum_probs=58.1

Q ss_pred             CCCeEEeecCCcccCC--CCcccccCCCCccCCccccCCC----------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMASD----------------------------------------  187 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~~----------------------------------------  187 (351)
                      ..+++++|||+|+..+  .......||+.|+|||.+....                                        
T Consensus       153 ~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~~~~~~~~~DiwSlGvilyell~g~~Pf~~~~~~~~~~~i~~~~  232 (293)
T d1jksa_         153 KPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVN  232 (293)
T ss_dssp             SCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHTTC
T ss_pred             ccceEecchhhhhhcCCCccccccCCCCcccCHHHHcCCCCCCcccchhhhHHHHHHHcCCCCCCCCCHHHHHHHHHhcC
Confidence            3469999999997643  3345578999999999543220                                        


Q ss_pred             --------hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         188 --------DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       188 --------~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                              ...++++.+||.+||..||.+|||++++|+||||+...+
T Consensus       233 ~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~~~  279 (293)
T d1jksa_         233 YEFEDEYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPKDT  279 (293)
T ss_dssp             CCCCHHHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTCC---
T ss_pred             CCCCchhcCCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCh
Confidence                    012356789999999999999999999999999986543

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=3.2e-09  Score=96.58  Aligned_cols=107  Identities=27%  Similarity=0.397  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccC--CCCcccccCCCCcc
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFD--DEHHSTIVSTRHYR  178 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~--~~~~~~~~~~~~~~  178 (351)
                      ++.++..|..-|.+++.|.+...-                 +|+ .+.....++|+|||+|+..  .....+..||+.|+
T Consensus       128 ~~qil~aL~yLH~~~IiHrDiKp~-----------------NIL-l~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~  189 (350)
T d1q5ka_         128 MYQLFRSLAYIHSFGICHRDIKPQ-----------------NLL-LDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYR  189 (350)
T ss_dssp             HHHHHHHHHHHHTTTEECCCCCGG-----------------GEE-ECTTTCCEEECCCTTCEECCTTSCCCSCCSCTTSC
T ss_pred             HHHHHHHHHHHHhcCCcccCCCcc-----------------eEE-EecCCCceeEecccchhhccCCccccccccccccc
Confidence            566677776665555554442222                 222 1222346899999999763  34455678999999


Q ss_pred             CCccccCCC-----------------------------------------------------------------------
Q psy2006         179 APERYMASD-----------------------------------------------------------------------  187 (351)
Q Consensus       179 ~pe~~~~~~-----------------------------------------------------------------------  187 (351)
                      +||.+....                                                                       
T Consensus       190 aPE~~~~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (350)
T d1q5ka_         190 APELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTK  269 (350)
T ss_dssp             CHHHHTTCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCC---CCCCCCCCCCCGGG
T ss_pred             ChHHhhcccCCCcceeecccceEEEehhhCCCCCCCCCHHHHHHHHHHHhCCChHHhhhhhccchhhccccccccCchhh
Confidence            999543210                                                                       


Q ss_pred             ---hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         188 ---DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       188 ---~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                         ...++++.+||.+||.+||.+|+|+.|+|+||||+...
T Consensus       270 ~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~  310 (350)
T d1q5ka_         270 VFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELR  310 (350)
T ss_dssp             TSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGGG
T ss_pred             hcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhcccc
Confidence               01235688999999999999999999999999997654

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=3.5e-09  Score=94.13  Aligned_cols=36  Identities=42%  Similarity=0.746  Sum_probs=32.6

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      +++.+||.+||..||.+|+|++|+|+||||++...+
T Consensus       257 ~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~~~p  292 (298)
T d1gz8a_         257 EDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTKP  292 (298)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCCCC
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhCCHhhccCCCC
Confidence            568899999999999999999999999999876543

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=6.4e-09  Score=94.70  Aligned_cols=37  Identities=22%  Similarity=0.499  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      ++++.+||.+||.+||.+|||++|+|+||||++....
T Consensus       301 ~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~~~  337 (362)
T d1q8ya_         301 AKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGM  337 (362)
T ss_dssp             HHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTTC
T ss_pred             CHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCCCc
Confidence            4668899999999999999999999999999866543

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.2e-08  Score=92.46  Aligned_cols=36  Identities=33%  Similarity=0.752  Sum_probs=32.0

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCch
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLPSS  227 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~~  227 (351)
                      .++.+||.+||.+||.+|+|++++|+||||+.....
T Consensus       269 ~~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~~~~  304 (345)
T d1pmea_         269 SKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDP  304 (345)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTTCCG
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhcCHhhccCCCC
Confidence            467899999999999999999999999999866543

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=4.5e-09  Score=94.44  Aligned_cols=79  Identities=25%  Similarity=0.464  Sum_probs=61.5

Q ss_pred             CCCCeEEeecCCcccC---CCCcccccCCCCccCCccccCC---------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFD---DEHHSTIVSTRHYRAPERYMAS---------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~---~~~~~~~~~~~~~~~pe~~~~~---------------------------------------  186 (351)
                      +.++++|+|||+|+..   ....+...||+.|+|||.+...                                       
T Consensus       138 ~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~  217 (320)
T d1xjda_         138 KDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRM  217 (320)
T ss_dssp             TTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCCceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCchhhhhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHc
Confidence            4568999999999753   2334456899999999955432                                       


Q ss_pred             -----ChhhHHHHHHHHHHhhccCCCCCCChh-hhhcCCCCCCCCch
Q psy2006         187 -----DDEEHRQLFDLISKMLEYEPSERISLS-EALRHPFFDKLPSS  227 (351)
Q Consensus       187 -----~~~~~~~~~~~i~~~L~~~p~~R~t~~-e~l~~~~~~~~~~~  227 (351)
                           +...++++.++|.+||..||.+|+|+. ++++||||+...+.
T Consensus       218 ~~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~hpff~~~~~~  264 (320)
T d1xjda_         218 DNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREINWE  264 (320)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTCCHH
T ss_pred             CCCCCCccCCHHHHHHHHHhcccCCCCCcCHHHHHHhCchhccCCHH
Confidence                 112346788999999999999999995 89999999987654

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=8.1e-09  Score=92.46  Aligned_cols=34  Identities=41%  Similarity=0.661  Sum_probs=30.3

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +++.+||.+||.+||.+|+|++|+|.||||+..+
T Consensus       279 ~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~p  312 (318)
T d3blha1         279 PYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDP  312 (318)
T ss_dssp             HHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSSS
T ss_pred             HHHHHHHHHHCcCChhHCcCHHHHHcChhhccCC
Confidence            4567899999999999999999999999997643

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=4.3e-08  Score=89.12  Aligned_cols=36  Identities=42%  Similarity=0.678  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         191 HRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       191 ~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                      ++++.+||.+||.+||.+|+|++|+|+||||+....
T Consensus       284 s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~~  319 (355)
T d2b1pa1         284 ASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYD  319 (355)
T ss_dssp             HHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGCC
T ss_pred             CHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCCCC
Confidence            456889999999999999999999999999976443

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=98.57  E-value=1.8e-08  Score=88.76  Aligned_cols=32  Identities=41%  Similarity=0.773  Sum_probs=29.5

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDK  223 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~  223 (351)
                      +.+.+||.+||.+||.+|+|++|+|+||||++
T Consensus       255 ~~~~dli~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         255 ESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             HHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhcCcccCc
Confidence            46779999999999999999999999999964

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.56  E-value=1.4e-08  Score=89.28  Aligned_cols=76  Identities=36%  Similarity=0.527  Sum_probs=59.2

Q ss_pred             CCCCeEEeecCCcccCC--CCcccccCCCCccCCccccCC----------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDD--EHHSTIVSTRHYRAPERYMAS----------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~--~~~~~~~~~~~~~~pe~~~~~----------------------------------------  186 (351)
                      ..+.++|+|||+|+...  .......||+.|.+||.+...                                        
T Consensus       145 ~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~~~~~~  224 (277)
T d1phka_         145 DDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLML  224 (277)
T ss_dssp             TTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHH
T ss_pred             CCCCeEEccchheeEccCCCceeeeeccCCCCCHHHhhccccccCCCCCchheEcccchhhhhhccCCCCCCCCCHHHHH
Confidence            45679999999997643  334557899999999954210                                        


Q ss_pred             --------------ChhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCC
Q psy2006         187 --------------DDEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKL  224 (351)
Q Consensus       187 --------------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~  224 (351)
                                    ....++++.++|.+||..||.+|+|++|+|+||||++.
T Consensus       225 ~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h~~~~~~  276 (277)
T d1phka_         225 RMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQY  276 (277)
T ss_dssp             HHHHHTCCCCCTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTT
T ss_pred             HHHHhCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHHHHh
Confidence                          01234678899999999999999999999999999763

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.8e-08  Score=91.22  Aligned_cols=108  Identities=27%  Similarity=0.461  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCcccccCCCCccC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHHSTIVSTRHYRA  179 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~  179 (351)
                      .++.++..|..-|.+++.|.+.+.-                 +|+.  -..++++++|||+|........+..||+.|++
T Consensus       126 i~~qil~aL~~LH~~giiHrDiKp~-----------------NILi--~~~~~~kl~dfg~a~~~~~~~~~~~g~~~y~a  186 (348)
T d2gfsa1         126 LIYQILRGLKYIHSADIIHRDLKPS-----------------NLAV--NEDCELKILDFGLARHTDDEMTGYVATRWYRA  186 (348)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCCCCGG-----------------GEEE--CTTCCEEECCC----CCTGGGSSSCHHHHTSC
T ss_pred             HHHHHHHHHHHHHhCCCcccccCCc-----------------cccc--cccccccccccchhcccCcccccccccccccC
Confidence            4677777777776666665553221                 2221  13467999999999888887888899999999


Q ss_pred             CccccCCC------------------------------------------------------------------------
Q psy2006         180 PERYMASD------------------------------------------------------------------------  187 (351)
Q Consensus       180 pe~~~~~~------------------------------------------------------------------------  187 (351)
                      ||.+....                                                                        
T Consensus       187 pE~~~~~~~~~~~~DiwSlGv~l~~ll~g~~pF~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (348)
T d2gfsa1         187 PEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQMPKMNF  266 (348)
T ss_dssp             HHHHTTCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHTTCCCHHHHHHHTTSCCCCCCCH
T ss_pred             chhhcCCccCCcccchhhhhHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCChHHhhhccchhhhhhhhhcccCCCcch
Confidence            99432210                                                                        


Q ss_pred             ----hhhHHHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCCc
Q psy2006         188 ----DEEHRQLFDLISKMLEYEPSERISLSEALRHPFFDKLPS  226 (351)
Q Consensus       188 ----~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~~  226 (351)
                          ...++++.+||.+||.+||.+|+|+.|+|+||||++...
T Consensus       267 ~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~~  309 (348)
T d2gfsa1         267 ANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  309 (348)
T ss_dssp             HHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             hhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCCC
Confidence                012356789999999999999999999999999987543

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=1.8e-08  Score=88.74  Aligned_cols=34  Identities=38%  Similarity=0.667  Sum_probs=31.0

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhcCCCCCCCC
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALRHPFFDKLP  225 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~~~~~~~~~  225 (351)
                      +.+.+||.+||.+||.+|+|++|+|+||||++..
T Consensus       257 ~~~~dll~~mL~~dP~~R~sa~e~L~Hp~f~~~~  290 (292)
T d1unla_         257 ATGRDLLQNLLKCNPVQRISAEEALQHPYFSDFC  290 (292)
T ss_dssp             HHHHHHHHHHSCSSGGGSCCHHHHTTSGGGSSCS
T ss_pred             HHHHHHHHHHccCChhHCcCHHHHhcChhhcCCC
Confidence            5678999999999999999999999999998754

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=7.7e-09  Score=92.89  Aligned_cols=106  Identities=24%  Similarity=0.410  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCC--CcccccCCCCcc
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE--HHSTIVSTRHYR  178 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~--~~~~~~~~~~~~  178 (351)
                      ++.++..+..-|+.++.|.+...                 .+|+...-...+++|+|||+++....  ......+|+.|+
T Consensus       108 ~~qi~~al~yLH~~~iiHrDlKp-----------------~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~  170 (321)
T d1tkia_         108 VHQVCEALQFLHSHNIGHFDIRP-----------------ENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYY  170 (321)
T ss_dssp             HHHHHHHHHHHHHTTEECCCCCG-----------------GGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGS
T ss_pred             HHHHHHHHHHHHHcCCCcccccc-----------------cceeecCCCceEEEEcccchhhccccCCcccccccccccc
Confidence            45566666665555554444221                 23443333456799999999976433  344568999999


Q ss_pred             CCccccCC--------------------------------------------Ch----hhHHHHHHHHHHhhccCCCCCC
Q psy2006         179 APERYMAS--------------------------------------------DD----EEHRQLFDLISKMLEYEPSERI  210 (351)
Q Consensus       179 ~pe~~~~~--------------------------------------------~~----~~~~~~~~~i~~~L~~~p~~R~  210 (351)
                      +||.+...                                            +.    ..++++.+||.+||..||.+|+
T Consensus       171 ape~~~~~~~~~~~DiWSlGvily~ll~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~  250 (321)
T d1tkia_         171 APEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRM  250 (321)
T ss_dssp             CHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSCHHHHHHHHTTSCSSGGGSC
T ss_pred             cchhccCCCCCchhhcccHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCChhhccCCCHHHHHHHHHHccCChhHCc
Confidence            99943211                                            00    1245688999999999999999


Q ss_pred             ChhhhhcCCCCCC
Q psy2006         211 SLSEALRHPFFDK  223 (351)
Q Consensus       211 t~~e~l~~~~~~~  223 (351)
                      |++|+|+||||.+
T Consensus       251 s~~eil~hp~~~~  263 (321)
T d1tkia_         251 TASEALQHPWLKQ  263 (321)
T ss_dssp             CHHHHHHSHHHHS
T ss_pred             CHHHHhcCHhhcc
Confidence            9999999999965

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=6.7e-08  Score=86.61  Aligned_cols=78  Identities=26%  Similarity=0.333  Sum_probs=59.5

Q ss_pred             CCCeEEeecCCcccCCCC----cccccCCCCccCCccccCC---------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH----HSTIVSTRHYRAPERYMAS---------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~----~~~~~~~~~~~~pe~~~~~---------------------------------------  186 (351)
                      .++++|+|||+|+.....    .....|++.|++||.+...                                       
T Consensus       165 ~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~~~~~i  244 (322)
T d1vzoa_         165 NGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEI  244 (322)
T ss_dssp             TSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHH
T ss_pred             CCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCcCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHH
Confidence            467999999999753222    3346799999999954321                                       


Q ss_pred             -----------ChhhHHHHHHHHHHhhccCCCCCC-----ChhhhhcCCCCCCCCch
Q psy2006         187 -----------DDEEHRQLFDLISKMLEYEPSERI-----SLSEALRHPFFDKLPSS  227 (351)
Q Consensus       187 -----------~~~~~~~~~~~i~~~L~~~p~~R~-----t~~e~l~~~~~~~~~~~  227 (351)
                                 +...++++.+||.+||.+||.+|+     |++|+|+||||+...+.
T Consensus       245 ~~~~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~i~~~  301 (322)
T d1vzoa_         245 SRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKINWD  301 (322)
T ss_dssp             HHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTCCHH
T ss_pred             HHhcccCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcCCCHH
Confidence                       112346788999999999999998     58999999999887653

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.2e-07  Score=82.12  Aligned_cols=105  Identities=17%  Similarity=0.265  Sum_probs=68.7

Q ss_pred             CCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc----ccccccccCCCCeEEeecCCcccCCC----
Q psy2006          95 PYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK----KKREVRRVRRCDIRLIDFGSATFDDE----  166 (351)
Q Consensus        95 ~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~~i~h~d~k~~ni~l~Dfg~s~~~~~----  166 (351)
                      .+++..+..++.|++.|            +.++.     ....+|.    .+|+..  +.+++||+|||+|+....    
T Consensus       130 ~l~~~~~~~~~~qi~~g------------l~ylH-----~~~ivHrDlKp~NILl~--~~~~~Kl~DFGla~~~~~~~~~  190 (299)
T d1ywna1         130 FLTLEHLICYSFQVAKG------------MEFLA-----SRKCIHRDLAARNILLS--EKNVVKICDFGLARDIYKDPDY  190 (299)
T ss_dssp             CBCHHHHHHHHHHHHHH------------HHHHH-----HTTCCCSCCCGGGEEEC--GGGCEEECC------CCSCTTS
T ss_pred             cCCHHHHHHHHHHHHHH------------HHHHH-----hCCCcCCcCCccceeEC--CCCcEEEccCcchhhccccccc
Confidence            58999999999999999            33322     2344554    233321  346799999999975322    


Q ss_pred             -CcccccCCCCccCCccccCC-----------------------------------------------ChhhHHHHHHHH
Q psy2006         167 -HHSTIVSTRHYRAPERYMAS-----------------------------------------------DDEEHRQLFDLI  198 (351)
Q Consensus       167 -~~~~~~~~~~~~~pe~~~~~-----------------------------------------------~~~~~~~~~~~i  198 (351)
                       ......||+.|+|||.+...                                               +...++++.++|
T Consensus       191 ~~~~~~~gt~~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li  270 (299)
T d1ywna1         191 VRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRMRAPDYTTPEMYQTM  270 (299)
T ss_dssp             CCTTSCCCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCCSHHHHHHHHHTCCCCCCTTCCHHHHHHH
T ss_pred             cccCceeeCccccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCccCCHHHHHHH
Confidence             12345789999999943211                                               112336788999


Q ss_pred             HHhhccCCCCCCChhhhhcC
Q psy2006         199 SKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       199 ~~~L~~~p~~R~t~~e~l~~  218 (351)
                      .+||..||.+|||++++++|
T Consensus       271 ~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         271 LDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             HHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHcCCChhHCcCHHHHHHH
Confidence            99999999999999999865

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.3e-07  Score=81.19  Aligned_cols=100  Identities=17%  Similarity=0.240  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCC-----CcccccCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE-----HHSTIVST  174 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~-----~~~~~~~~  174 (351)
                      .++.++..+..-|.+++.|.+...-                 +|+..  ..+++||+|||+|+....     ......||
T Consensus       109 i~~qi~~gl~yLH~~~ivHrDlKp~-----------------NiLl~--~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt  169 (276)
T d1uwha_         109 IARQTAQGMDYLHAKSIIHRDLKSN-----------------NIFLH--EDLTVKIGDFGLATVKSRWSGSHQFEQLSGS  169 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGG-----------------GEEEE--TTSSEEECCCCCSCC------------CCCC
T ss_pred             HHHHHHHHHHHHhcCCEeccccCHH-----------------HEEEc--CCCCEEEccccceeeccccCCcccccccccC
Confidence            4667777777776666655553222                 22221  246799999999976322     23446899


Q ss_pred             CCccCCccccCCC-----------------------------------------------------hhhHHHHHHHHHHh
Q psy2006         175 RHYRAPERYMASD-----------------------------------------------------DEEHRQLFDLISKM  201 (351)
Q Consensus       175 ~~~~~pe~~~~~~-----------------------------------------------------~~~~~~~~~~i~~~  201 (351)
                      +.|+|||.+....                                                     ...++++.++|.+|
T Consensus       170 ~~y~APE~l~~~~~~~~~~~sDiwS~Gv~l~el~tg~~Pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~li~~c  249 (276)
T d1uwha_         170 ILWMAPEVIRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGYLSPDLSKVRSNCPKAMKRLMAEC  249 (276)
T ss_dssp             GGGCCHHHHTTCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTSCCCCGGGSCTTCCHHHHHHHHHH
T ss_pred             cccCCHHHHhcccCCCCCchhhhhhhHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCcchhccccchHHHHHHHHHH
Confidence            9999999753210                                                     01125688999999


Q ss_pred             hccCCCCCCChhhhhcC
Q psy2006         202 LEYEPSERISLSEALRH  218 (351)
Q Consensus       202 L~~~p~~R~t~~e~l~~  218 (351)
                      |..||.+|||+++++.+
T Consensus       250 l~~dp~~RPt~~~il~~  266 (276)
T d1uwha_         250 LKKKRDERPLFPQILAS  266 (276)
T ss_dssp             TCSSGGGSCCHHHHHHH
T ss_pred             cCCCHhHCcCHHHHHHH
Confidence            99999999999998764

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=1.1e-07  Score=83.01  Aligned_cols=104  Identities=19%  Similarity=0.316  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC----cccccCC
Q psy2006          99 DQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH----HSTIVST  174 (351)
Q Consensus        99 ~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~----~~~~~~~  174 (351)
                      ..++.++..+..-|.+++.|.+...                 .+|+..  ..++++|+|||+|+.....    .....||
T Consensus       113 ~i~~qi~~gl~~lH~~~ivHrDiKp-----------------~NIll~--~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt  173 (272)
T d1qpca_         113 DMAAQIAEGMAFIEERNYIHRDLRA-----------------ANILVS--DTLSCKIADFGLARLIEDNEYTAREGAKFP  173 (272)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSG-----------------GGEEEC--TTSCEEECCCTTCEECSSSCEECCTTCCCC
T ss_pred             HHHHHHHHHHHHHHhCCcccCccch-----------------hheeee--cccceeeccccceEEccCCccccccccCCc
Confidence            3466677777666555544433221                 222221  3567999999999764322    2345788


Q ss_pred             CCccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCC
Q psy2006         175 RHYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSE  208 (351)
Q Consensus       175 ~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~  208 (351)
                      +.|+|||.+...                                              +...++++.+++.+||..||++
T Consensus       174 ~~y~APE~~~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~P~~  253 (272)
T d1qpca_         174 IKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYRMVRPDNCPEELYQLMRLCWKERPED  253 (272)
T ss_dssp             TTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChHHHhCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCcccChHHHHHHHHHHcCCCHhH
Confidence            999999943211                                              1123367889999999999999


Q ss_pred             CCChhhhhc--CCCC
Q psy2006         209 RISLSEALR--HPFF  221 (351)
Q Consensus       209 R~t~~e~l~--~~~~  221 (351)
                      |||++++++  ++||
T Consensus       254 Rpt~~ei~~~L~~~f  268 (272)
T d1qpca_         254 RPTFDYLRSVLEDFF  268 (272)
T ss_dssp             SCCHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHhhhhh
Confidence            999999876  4444

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=6.5e-07  Score=78.55  Aligned_cols=108  Identities=20%  Similarity=0.287  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCC----CcccccCC
Q psy2006          99 DQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE----HHSTIVST  174 (351)
Q Consensus        99 ~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~----~~~~~~~~  174 (351)
                      ..++.++..+..-|.+++.|.+....                 +|+..  ..++++|+|||+|+....    ......||
T Consensus       117 ~i~~~i~~gl~~LH~~~ivH~DlKp~-----------------NIll~--~~~~~kl~DfGla~~~~~~~~~~~~~~~gt  177 (285)
T d1fmka3         117 DMAAQIASGMAYVERMNYVHRDLRAA-----------------NILVG--ENLVCKVADFGLARLIEDNEYTARQGAKFP  177 (285)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGG-----------------GEEEC--GGGCEEECCCCTTC--------------CC
T ss_pred             HHHHHHHHHHHHHhhhheecccccce-----------------EEEEC--CCCcEEEcccchhhhccCCCceeecccccc
Confidence            44677778887776666665553322                 22221  135699999999975322    22335789


Q ss_pred             CCccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCC
Q psy2006         175 RHYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSE  208 (351)
Q Consensus       175 ~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~  208 (351)
                      +.|+|||.+...                                              ....++++.++|.+||..||++
T Consensus       178 ~~y~aPE~~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~  257 (285)
T d1fmka3         178 IKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERGYRMPCPPECPESLHDLMCQCWRKEPEE  257 (285)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTSCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChHHHhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccCHHHHHHHHHHcccCHhH
Confidence            999999943211                                              1223467889999999999999


Q ss_pred             CCChhhhhc--CCCCCCCC
Q psy2006         209 RISLSEALR--HPFFDKLP  225 (351)
Q Consensus       209 R~t~~e~l~--~~~~~~~~  225 (351)
                      |||+++++.  ++||....
T Consensus       258 Rps~~~i~~~L~~~~~~~~  276 (285)
T d1fmka3         258 RPTFEYLQAFLEDYFTSTE  276 (285)
T ss_dssp             SCCHHHHHHHHHTTTSCSC
T ss_pred             CcCHHHHHHHHhhhhcCCC
Confidence            999999887  78886543

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=1.3e-06  Score=76.51  Aligned_cols=100  Identities=16%  Similarity=0.202  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC------ccccc
Q psy2006          99 DQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH------HSTIV  172 (351)
Q Consensus        99 ~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~------~~~~~  172 (351)
                      ..+..++..+..-|++++.|.+...-.                 |+.  -..+++||+|||+|+.....      .....
T Consensus       114 ~i~~~i~~gl~~lH~~~iiHrDlKp~N-----------------ILl--~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~  174 (283)
T d1mqba_         114 GMLRGIAAGMKYLANMNYVHRDLAARN-----------------ILV--NSNLVCKVSDFGLSRVLEDDPEATYTTSGGK  174 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGG-----------------EEE--CTTCCEEECCCCC-----------------C
T ss_pred             HHHHHHHHhhhhccccccccCccccce-----------------EEE--CCCCeEEEcccchhhcccCCCccceEeccCC
Confidence            346677777777766666555533222                 211  12457999999999763221      22346


Q ss_pred             CCCCccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCC
Q psy2006         173 STRHYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEP  206 (351)
Q Consensus       173 ~~~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p  206 (351)
                      ||+.|+|||.+...                                              +.....++.++|.+|+..||
T Consensus       175 gt~~Y~APE~l~~~~~~~~sDI~S~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~p  254 (283)
T d1mqba_         175 IPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQER  254 (283)
T ss_dssp             CCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCBHHHHHHHHHHTCSST
T ss_pred             CCccccCHHHHccCCCCCcccccccHHHHHHHHhCCCCccccCCHHHHHHHHhccCCCCCchhhHHHHHHHHHHHCcCCH
Confidence            88999999954321                                              11123568899999999999


Q ss_pred             CCCCChhhhhc
Q psy2006         207 SERISLSEALR  217 (351)
Q Consensus       207 ~~R~t~~e~l~  217 (351)
                      .+|||+.++++
T Consensus       255 ~~RPt~~eil~  265 (283)
T d1mqba_         255 ARRPKFADIVS  265 (283)
T ss_dssp             TTSCCHHHHHH
T ss_pred             hHCcCHHHHHH
Confidence            99999999865

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4.2e-07  Score=78.81  Aligned_cols=100  Identities=17%  Similarity=0.252  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC----cccccCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH----HSTIVSTR  175 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~----~~~~~~~~  175 (351)
                      .+..++..+..-+++++.|.+...-                 +++..  +.++++|+|||+|+.....    .....||+
T Consensus       106 i~~qia~gl~~lH~~~iiHrDlKp~-----------------Nill~--~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~  166 (263)
T d1sm2a_         106 MCLDVCEGMAYLEEACVIHRDLAAR-----------------NCLVG--ENQVIKVSDFGMTRFVLDDQYTSSTGTKFPV  166 (263)
T ss_dssp             HHHHHHHHHHHHHHTTCCCTTCSGG-----------------GEEEC--GGGCEEECSCC------------------CT
T ss_pred             HHHHHHHHHHhhhccceeecccchh-----------------heeec--CCCCeEecccchheeccCCCceeecceecCc
Confidence            4566677776666666655543222                 22211  2457999999999763222    22357899


Q ss_pred             CccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCCC
Q psy2006         176 HYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSER  209 (351)
Q Consensus       176 ~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R  209 (351)
                      .|+|||.+...                                              +...++++.++|.+|+..||.+|
T Consensus       167 ~y~aPE~l~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~~R  246 (263)
T d1sm2a_         167 KWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLASTHVYQIMNHCWKERPEDR  246 (263)
T ss_dssp             TSCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCCHHHHHHHHHHTCCCCCCTTSCHHHHHHHHHHTCSSGGGS
T ss_pred             ccCChHHhcCCCCCchhhhcchHHHHHHHHHCCCCCCCCCCHHHHHHHHHhcCCCCCccccCHHHHHHHHHHccCCHhHC
Confidence            99999954322                                              11223678899999999999999


Q ss_pred             CChhhhhcC
Q psy2006         210 ISLSEALRH  218 (351)
Q Consensus       210 ~t~~e~l~~  218 (351)
                      ||+++++++
T Consensus       247 ps~~~il~~  255 (263)
T d1sm2a_         247 PAFSRLLRQ  255 (263)
T ss_dssp             CCHHHHHHH
T ss_pred             cCHHHHHHH
Confidence            999998764

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.2e-07  Score=82.13  Aligned_cols=106  Identities=11%  Similarity=0.178  Sum_probs=73.0

Q ss_pred             CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc----ccccccccCCCCeEEeecCCcccCCCC--
Q psy2006          94 LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK----KKREVRRVRRCDIRLIDFGSATFDDEH--  167 (351)
Q Consensus        94 ~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~~i~h~d~k~~ni~l~Dfg~s~~~~~~--  167 (351)
                      ..+++..+..++.|++.|            +.++.     .-..+|.    .+|..  -+.++++|+|||+|+.....  
T Consensus       159 ~~l~~~~~~~i~~qi~~g------------l~yLH-----~~~IiHRDlKp~Nill--~~~~~~Kl~DFGla~~~~~~~~  219 (325)
T d1rjba_         159 NVLTFEDLLCFAYQVAKG------------MEFLE-----FKSCVHRDLAARNVLV--THGKVVKICDFGLARDIMSDSN  219 (325)
T ss_dssp             --CCHHHHHHHHHHHHHH------------HHHHH-----HTTEEETTCSGGGEEE--ETTTEEEECCCGGGSCGGGCTT
T ss_pred             CCCCHHHHHHHHHHHHHH------------HHHHH-----hCCeeeccCchhcccc--ccCCeEEEeeccccccccCCCc
Confidence            468999999999999999            33332     2345664    22321  13567999999999763222  


Q ss_pred             ---cccccCCCCccCCccccCC-----------------------------------------------ChhhHHHHHHH
Q psy2006         168 ---HSTIVSTRHYRAPERYMAS-----------------------------------------------DDEEHRQLFDL  197 (351)
Q Consensus       168 ---~~~~~~~~~~~~pe~~~~~-----------------------------------------------~~~~~~~~~~~  197 (351)
                         ..+..||+.|+|||.+...                                               +...++++.++
T Consensus       220 ~~~~~~~~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~l  299 (325)
T d1rjba_         220 YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPVDANFYKLIQNGFKMDQPFYATEEIYII  299 (325)
T ss_dssp             SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred             eeeeccccCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCCCcCCHHHHHH
Confidence               1235679999999943210                                               11223678899


Q ss_pred             HHHhhccCCCCCCChhhhhcC
Q psy2006         198 ISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       198 i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      |.+||..||++|||++|++++
T Consensus       300 i~~cl~~dP~~RPt~~ei~~~  320 (325)
T d1rjba_         300 MQSCWAFDSRKRPSFPNLTSF  320 (325)
T ss_dssp             HHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHcCCChhHCcCHHHHHHH
Confidence            999999999999999998754

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.7e-06  Score=76.72  Aligned_cols=105  Identities=14%  Similarity=0.285  Sum_probs=74.0

Q ss_pred             CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc----ccccccccCCCCeEEeecCCcccCCCC--
Q psy2006          94 LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK----KKREVRRVRRCDIRLIDFGSATFDDEH--  167 (351)
Q Consensus        94 ~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~~i~h~d~k~~ni~l~Dfg~s~~~~~~--  167 (351)
                      ..+++..+..++.|++.|            +.++..     -.++|.    .+|+. + +.++++++|||+++.....  
T Consensus       140 ~~l~~~~~~~~~~qi~~g------------l~~LH~-----~~ivHrDLKp~NIl~-~-~~~~~ki~DfG~~~~~~~~~~  200 (311)
T d1t46a_         140 LALDLEDLLSFSYQVAKG------------MAFLAS-----KNCIHRDLAARNILL-T-HGRITKICDFGLARDIKNDSN  200 (311)
T ss_dssp             CCCCHHHHHHHHHHHHHH------------HHHHHH-----TTCCCSCCSGGGEEE-E-TTTEEEECCCGGGSCTTSCTT
T ss_pred             cCCCHHHHHHHHHHHHHH------------HHHHHh-----CCeeecccccccccc-c-ccCcccccccchheeccCCCc
Confidence            468999999999999999            333332     345563    23332 1 3567999999999763322  


Q ss_pred             ---cccccCCCCccCCccccCC-----------------------------------------------ChhhHHHHHHH
Q psy2006         168 ---HSTIVSTRHYRAPERYMAS-----------------------------------------------DDEEHRQLFDL  197 (351)
Q Consensus       168 ---~~~~~~~~~~~~pe~~~~~-----------------------------------------------~~~~~~~~~~~  197 (351)
                         .....||+.|+|||.+...                                               +...++.+.++
T Consensus       201 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~L  280 (311)
T d1t46a_         201 YVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKFYKMIKEGFRMLSPEHAPAEMYDI  280 (311)
T ss_dssp             SEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHHHHHHHHTCCCCCCTTSCHHHHHH
T ss_pred             ceEeeecccChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCHHHHHHHHHhcCCCCCCcccccHHHHHH
Confidence               1235789999999943211                                               11233678899


Q ss_pred             HHHhhccCCCCCCChhhhhc
Q psy2006         198 ISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       198 i~~~L~~~p~~R~t~~e~l~  217 (351)
                      |.+|+..||.+|||++++++
T Consensus       281 i~~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         281 MKTCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             HHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHcCCChhHCcCHHHHHH
Confidence            99999999999999999865

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.5e-06  Score=74.99  Aligned_cols=100  Identities=14%  Similarity=0.230  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC----cccccCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH----HSTIVSTR  175 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~----~~~~~~~~  175 (351)
                      .+..++..+..-|.+++.|...                 ...++...  ...+++|+|||+|+.....    .....+|+
T Consensus       105 i~~qi~~gl~~LH~~~iiH~dl-----------------k~~Nill~--~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~  165 (258)
T d1k2pa_         105 MCKDVCEAMEYLESKQFLHRDL-----------------AARNCLVN--DQGVVKVSDFGLSRYVLDDEYTSSVGSKFPV  165 (258)
T ss_dssp             HHHHHHHHHHHHHHTTBCCSCC-----------------SGGGEEEC--TTCCEEECCCSSCCBCSSSSCCCCCCSCCCG
T ss_pred             HHHHHHHHHHHHhhcCcccccc-----------------cceeEEEc--CCCcEEECcchhheeccCCCceeecccCCCC
Confidence            4566777777766555544441                 12233221  3567999999999753322    22356889


Q ss_pred             CccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCCC
Q psy2006         176 HYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSER  209 (351)
Q Consensus       176 ~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R  209 (351)
                      .|+|||.+...                                              +...++++.++|.+|+..||.+|
T Consensus       166 ~y~aPE~~~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~dP~~R  245 (258)
T d1k2pa_         166 RWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASEKVYTIMYSCWHEKADER  245 (258)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGS
T ss_pred             CcCCcHHhcCCCCCcceeecccchhhHhHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcccccHHHHHHHHHHccCCHhHC
Confidence            99999943211                                              11223578899999999999999


Q ss_pred             CChhhhhcC
Q psy2006         210 ISLSEALRH  218 (351)
Q Consensus       210 ~t~~e~l~~  218 (351)
                      ||+++++++
T Consensus       246 Pt~~eil~~  254 (258)
T d1k2pa_         246 PTFKILLSN  254 (258)
T ss_dssp             CCHHHHHHH
T ss_pred             cCHHHHHHH
Confidence            999998764

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=9.8e-07  Score=77.45  Aligned_cols=99  Identities=17%  Similarity=0.301  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCc----ccccCCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHH----STIVSTR  175 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~----~~~~~~~  175 (351)
                      .+..++..+..-|++++.|.+...-.                 |+..  ..+++||+|||+|+......    ....|++
T Consensus       120 i~~qi~~gL~yLH~~~iiHrDlKp~N-----------------ILl~--~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~  180 (287)
T d1opja_         120 MATQISSAMEYLEKKNFIHRDLAARN-----------------CLVG--ENHLVKVADFGLSRLMTGDTYTAHAGAKFPI  180 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSGGG-----------------EEEC--GGGCEEECCCCCTTTCCSSSSEEETTEEECG
T ss_pred             HHHHHHHHHHHHHHCCcccCccccCe-----------------EEEC--CCCcEEEccccceeecCCCCceeeccccccc
Confidence            46677777777777777666533322                 2211  23569999999998743332    2245788


Q ss_pred             CccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCCC
Q psy2006         176 HYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSER  209 (351)
Q Consensus       176 ~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R  209 (351)
                      .|+|||.+...                                              +...++++.++|.+||..||.+|
T Consensus       181 ~y~aPE~~~~~~~~~k~DiwS~Gv~l~ell~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~dP~~R  260 (287)
T d1opja_         181 KWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKDYRMERPEGCPEKVYELMRACWQWNPSDR  260 (287)
T ss_dssp             GGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGS
T ss_pred             cccChHHHcCCCCCchhhhhhHHHHHHHHHhCCCCCCCcchHHHHHHHHhcCCCCCCCccchHHHHHHHHHHcCCCHhHC
Confidence            99999943211                                              11233678899999999999999


Q ss_pred             CChhhhhc
Q psy2006         210 ISLSEALR  217 (351)
Q Consensus       210 ~t~~e~l~  217 (351)
                      ||++++++
T Consensus       261 ps~~ei~~  268 (287)
T d1opja_         261 PSFAEIHQ  268 (287)
T ss_dssp             CCHHHHHH
T ss_pred             cCHHHHHH
Confidence            99999865

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=4.9e-06  Score=73.25  Aligned_cols=99  Identities=16%  Similarity=0.200  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC--------cccc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH--------HSTI  171 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~--------~~~~  171 (351)
                      .++.++..|..-|.+++.|.+...-                 +|+. | +.++++|+|||+|+.....        ....
T Consensus       133 i~~qia~gl~yLH~~~iiHrDlKp~-----------------NILl-~-~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~  193 (299)
T d1jpaa_         133 MLRGIAAGMKYLADMNYVHRDLAAR-----------------NILV-N-SNLVCKVSDFGLSRFLEDDTSDPTYTSALGG  193 (299)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGG-----------------GEEE-C-TTCCEEECCC---------------------
T ss_pred             HHHHHHHHHHHHhhCCCccCccccc-----------------eEEE-C-CCCcEEECCcccceEccCCCCcceeeecccc
Confidence            4667777777776666655553322                 2221 1 3467999999999763221        1124


Q ss_pred             cCCCCccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccC
Q psy2006         172 VSTRHYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYE  205 (351)
Q Consensus       172 ~~~~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~  205 (351)
                      .+|+.|+|||.+...                                              +...++++.+++.+||..|
T Consensus       194 ~~t~~y~aPE~~~~~~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~li~~cl~~~  273 (299)
T d1jpaa_         194 KIPIRWTAPEAIQYRKFTSASDVWSYGIVMWEVMSYGERPYWDMTNQDVINAIEQDYRLPPPMDCPSALHQLMLDCWQKD  273 (299)
T ss_dssp             --CGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             cCCccccCHHHHhcCCCCcccccccchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHHHHHHcCCC
Confidence            578899999943211                                              1112356889999999999


Q ss_pred             CCCCCChhhhhc
Q psy2006         206 PSERISLSEALR  217 (351)
Q Consensus       206 p~~R~t~~e~l~  217 (351)
                      |.+|||+.++++
T Consensus       274 P~~RPs~~ei~~  285 (299)
T d1jpaa_         274 RNHRPKFGQIVN  285 (299)
T ss_dssp             TTTSCCHHHHHH
T ss_pred             HhHCcCHHHHHH
Confidence            999999988764

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=1.6e-06  Score=75.36  Aligned_cols=99  Identities=20%  Similarity=0.302  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC----cccccCCCC
Q psy2006         101 VRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH----HSTIVSTRH  176 (351)
Q Consensus       101 ~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~----~~~~~~~~~  176 (351)
                      +..++..+..-+.+++.|.+...                 .+|...  +.++++|+|||+|+.....    .+...||+.
T Consensus       114 ~~qi~~gl~ylH~~~iiHrDlKp-----------------~NIll~--~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~  174 (273)
T d1mp8a_         114 AYQLSTALAYLESKRFVHRDIAA-----------------RNVLVS--SNDCVKLGDFGLSRYMEDSTYYKASKGKLPIK  174 (273)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSG-----------------GGEEEE--ETTEEEECC-------------------CCGG
T ss_pred             HHHHHHHhhhhcccCeeccccch-----------------hheeec--CCCcEEEccchhheeccCCcceeccceecCcc
Confidence            55666666666555555444221                 222211  3456999999999763322    233567899


Q ss_pred             ccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCCCC
Q psy2006         177 YRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSERI  210 (351)
Q Consensus       177 ~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~R~  210 (351)
                      |+|||.+...                                              +...++++.++|.+||..||.+||
T Consensus       175 y~apE~l~~~~~~~~~DiwSlGvil~e~lt~g~~P~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~li~~cl~~dp~~Rp  254 (273)
T d1mp8a_         175 WMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERLPMPPNCPPTLYSLMTKCWAYDPSRRP  254 (273)
T ss_dssp             GCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSC
T ss_pred             cchhhHhccCCCCCccccccchHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHcCCCHhHCc
Confidence            9999943211                                              112336788999999999999999


Q ss_pred             ChhhhhcC
Q psy2006         211 SLSEALRH  218 (351)
Q Consensus       211 t~~e~l~~  218 (351)
                      |+++++.+
T Consensus       255 s~~ei~~~  262 (273)
T d1mp8a_         255 RFTELKAQ  262 (273)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence            99998754

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.8e-06  Score=75.23  Aligned_cols=99  Identities=18%  Similarity=0.267  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC------ccccc
Q psy2006          99 DQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH------HSTIV  172 (351)
Q Consensus        99 ~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~------~~~~~  172 (351)
                      ..+..++..+..-|++++.|.+...                 .+|+.  .+.++++|+|||+|+.....      .....
T Consensus       111 ~i~~qi~~gl~ylH~~~iiHrDlKp-----------------~Nill--~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~  171 (277)
T d1xbba_         111 ELVHQVSMGMKYLEESNFVHRDLAA-----------------RNVLL--VTQHYAKISDFGLSKALRADENYYKAQTHGK  171 (277)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCSG-----------------GGEEE--EETTEEEECCCTTCEECCTTCSEEEC----C
T ss_pred             HHHHHHHHHHhhHHhCCcccCCCcc-----------------hhhcc--cccCcccccchhhhhhccccccccccccccC
Confidence            3466777777776555554444222                 22221  13456899999999763222      12246


Q ss_pred             CCCCccCCccccC-----------------------C-----------------------ChhhHHHHHHHHHHhhccCC
Q psy2006         173 STRHYRAPERYMA-----------------------S-----------------------DDEEHRQLFDLISKMLEYEP  206 (351)
Q Consensus       173 ~~~~~~~pe~~~~-----------------------~-----------------------~~~~~~~~~~~i~~~L~~~p  206 (351)
                      ||+.|+|||.+..                       .                       +..-++++.++|.+|+..||
T Consensus       172 gt~~y~APE~l~~~~~~~~sDiwS~Gv~l~ellt~g~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dp  251 (277)
T d1xbba_         172 WPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDLMNLCWTYDV  251 (277)
T ss_dssp             CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSST
T ss_pred             CCceecCchhhcCCCCCchhhhccchhhhhHHhhCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHHcCCCH
Confidence            8899999994321                       1                       11123668899999999999


Q ss_pred             CCCCChhhhh
Q psy2006         207 SERISLSEAL  216 (351)
Q Consensus       207 ~~R~t~~e~l  216 (351)
                      .+|||+++++
T Consensus       252 ~~RPs~~~i~  261 (277)
T d1xbba_         252 ENRPGFAAVE  261 (277)
T ss_dssp             TTSCCHHHHH
T ss_pred             hHCcCHHHHH
Confidence            9999998873

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=1.3e-06  Score=77.73  Aligned_cols=100  Identities=12%  Similarity=0.131  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC-----cccccCC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH-----HSTIVST  174 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~-----~~~~~~~  174 (351)
                      .+..++..+..-|.+++.|.+...-                 +|+..  +.++++|+|||+|+.....     .....||
T Consensus       116 i~~qi~~gl~yLH~~~iiHrDlKp~-----------------NIll~--~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt  176 (317)
T d1xkka_         116 WCVQIAKGMNYLEDRRLVHRDLAAR-----------------NVLVK--TPQHVKITDFGLAKLLGAEEKEYHAEGGKVP  176 (317)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGG-----------------GEEEE--ETTEEEECCCSHHHHTTTTCC--------CC
T ss_pred             HHHHHHHHHHHHHHcCcccCcchhh-----------------cceeC--CCCCeEeeccccceecccccccccccccccC
Confidence            4566777777766666655553222                 22211  2456899999999763222     2234689


Q ss_pred             CCccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCCCC
Q psy2006         175 RHYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEPSE  208 (351)
Q Consensus       175 ~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p~~  208 (351)
                      +.|+|||.+...                                              +...++++.++|.+|+..||.+
T Consensus       177 ~~y~APE~l~~~~~~~~sDvwS~Gvil~el~t~g~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~li~~cl~~dP~~  256 (317)
T d1xkka_         177 IKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGERLPQPPICTIDVYMIMVKCWMIDADS  256 (317)
T ss_dssp             TTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCGGGHHHHHHHTCCCCCCTTBCHHHHHHHHHHTCSSGGG
T ss_pred             ccccChHHHhcCCCChhhhhhhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCCcccCHHHHHHHHHhCCCChhh
Confidence            999999943211                                              1123367889999999999999


Q ss_pred             CCChhhhhcC
Q psy2006         209 RISLSEALRH  218 (351)
Q Consensus       209 R~t~~e~l~~  218 (351)
                      |||+.+++.+
T Consensus       257 RPs~~eil~~  266 (317)
T d1xkka_         257 RPKFRELIIE  266 (317)
T ss_dssp             SCCHHHHHHH
T ss_pred             CcCHHHHHHH
Confidence            9999998875

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.7e-06  Score=75.28  Aligned_cols=114  Identities=15%  Similarity=0.130  Sum_probs=76.9

Q ss_pred             HHHHhcCCCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc----ccccccccCCCCeEEeecCCc
Q psy2006          86 DFLKENNYLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK----KKREVRRVRRCDIRLIDFGSA  161 (351)
Q Consensus        86 ~~l~~~~~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~~i~h~d~k~~ni~l~Dfg~s  161 (351)
                      ..........+++..+..++.|++.|            +.++     +....+|.    .+|+.  -+.++++|+|||+|
T Consensus       114 ~~~~~~~~~~l~~~~~~~~~~qia~g------------l~~l-----H~~~iiHrDlkp~NIL~--~~~~~~kl~DfG~a  174 (309)
T d1fvra_         114 FAIANSTASTLSSQQLLHFAADVARG------------MDYL-----SQKQFIHRDLAARNILV--GENYVAKIADFGLS  174 (309)
T ss_dssp             HHHHTTBSCSSCHHHHHHHHHHHHHH------------HHHH-----HHTTEECSCCSGGGEEE--CGGGCEEECCTTCE
T ss_pred             hhccccccCCCCHHHHHHHHHHHHHH------------HHhh-----hcCCccccccccceEEE--cCCCceEEcccccc
Confidence            33344444579999999999999999            3322     22345563    23332  23467999999999


Q ss_pred             ccCCCCc--ccccCCCCccCCccccCC----------------------------------------------ChhhHHH
Q psy2006         162 TFDDEHH--STIVSTRHYRAPERYMAS----------------------------------------------DDEEHRQ  193 (351)
Q Consensus       162 ~~~~~~~--~~~~~~~~~~~pe~~~~~----------------------------------------------~~~~~~~  193 (351)
                      +......  ....||..|++||.+...                                              +...+++
T Consensus       175 ~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~~~~~~~~i~~~~~~~~~~~~~~~  254 (309)
T d1fvra_         175 RGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQGYRLEKPLNCDDE  254 (309)
T ss_dssp             ESSCEECCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGTCCCCCCTTBCHH
T ss_pred             ccccccccccceecCCcccchHHhccCCCCccceeehhHHHHHHHHhcCCCCCCCCCHHHHHHHHHhcCCCCCCccCCHH
Confidence            7643332  235689999999943211                                              1123467


Q ss_pred             HHHHHHHhhccCCCCCCChhhhhcC
Q psy2006         194 LFDLISKMLEYEPSERISLSEALRH  218 (351)
Q Consensus       194 ~~~~i~~~L~~~p~~R~t~~e~l~~  218 (351)
                      +.++|.+||..||++|||+++++.+
T Consensus       255 ~~~li~~cl~~dP~~RPs~~eil~~  279 (309)
T d1fvra_         255 VYDLMRQCWREKPYERPSFAQILVS  279 (309)
T ss_dssp             HHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHcCCChhHCcCHHHHHHH
Confidence            8999999999999999999999864

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=6.7e-06  Score=70.93  Aligned_cols=69  Identities=14%  Similarity=0.180  Sum_probs=45.3

Q ss_pred             CCCCeEEeecCCcccCCCCcccccCCCCccCCccccCC------------------------------------------
Q psy2006         149 RRCDIRLIDFGSATFDDEHHSTIVSTRHYRAPERYMAS------------------------------------------  186 (351)
Q Consensus       149 k~~ni~l~Dfg~s~~~~~~~~~~~~~~~~~~pe~~~~~------------------------------------------  186 (351)
                      ..++++++|||+|+..........+|+.|+|||.+...                                          
T Consensus       138 ~~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~~~~t~~sDIwSfG~il~el~t~~~~p~~~~~~~~~~~~i~~~~  217 (262)
T d1byga_         138 EDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKGY  217 (262)
T ss_dssp             TTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTTTC
T ss_pred             CCCCEeecccccceecCCCCccccccccCCChHHHhCCCCChHHHHHhHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCC
Confidence            35679999999999866666667889999999943211                                          


Q ss_pred             ----ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 ----DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 ----~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                          +...++++.++|.+|+..||.+|||+.++++
T Consensus       218 ~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~  252 (262)
T d1byga_         218 KMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE  252 (262)
T ss_dssp             CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHH
Confidence                1123367889999999999999999999865

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.79  E-value=5.2e-06  Score=73.13  Aligned_cols=106  Identities=14%  Similarity=0.179  Sum_probs=71.2

Q ss_pred             CCCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc----ccccccccCCCCeEEeecCCcccCC---
Q psy2006          93 YLPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK----KKREVRRVRRCDIRLIDFGSATFDD---  165 (351)
Q Consensus        93 ~~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~~i~h~d~k~~ni~l~Dfg~s~~~~---  165 (351)
                      ...+++..+..++.|++.|            +.++     +....+|.    .+|.. | ...++||+|||+|+...   
T Consensus       134 ~~~l~~~~~~~i~~qi~~g------------l~yl-----H~~~ivHrDlKp~NILl-d-~~~~~Kl~DFGls~~~~~~~  194 (301)
T d1lufa_         134 PPPLSCAEQLCIARQVAAG------------MAYL-----SERKFVHRDLATRNCLV-G-ENMVVKIADFGLSRNIYSAD  194 (301)
T ss_dssp             -CCCCHHHHHHHHHHHHHH------------HHHH-----HHTTCCCSCCSGGGEEE-C-GGGCEEECCCSCHHHHTGGG
T ss_pred             CCCCCHHHHHHHHHHHHHH------------hhhc-----ccCCeEeeEEcccceEE-C-CCCcEEEccchhheeccCCc
Confidence            3468999999999999998            2222     22344553    22332 2 34679999999996421   


Q ss_pred             --CCcccccCCCCccCCccccCC----------------------------------------------ChhhHHHHHHH
Q psy2006         166 --EHHSTIVSTRHYRAPERYMAS----------------------------------------------DDEEHRQLFDL  197 (351)
Q Consensus       166 --~~~~~~~~~~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~  197 (351)
                        .......+|+.|+|||.+...                                              +...++++.++
T Consensus       195 ~~~~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~~~e~~~~v~~~~~~~~p~~~~~~~~~l  274 (301)
T d1lufa_         195 YYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMAHEEVIYYVRDGNILACPENCPLELYNL  274 (301)
T ss_dssp             CBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHH
T ss_pred             cccccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCCHHHHHHHHHcCCCCCCCccchHHHHHH
Confidence              122346788999999933211                                              11234678899


Q ss_pred             HHHhhccCCCCCCChhhhhc
Q psy2006         198 ISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       198 i~~~L~~~p~~R~t~~e~l~  217 (351)
                      |.+|+..+|.+|||+.++++
T Consensus       275 i~~cl~~~P~~RPt~~ev~~  294 (301)
T d1lufa_         275 MRLCWSKLPADRPSFCSIHR  294 (301)
T ss_dssp             HHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHcCCChhHCcCHHHHHH
Confidence            99999999999999999753

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=1.6e-05  Score=69.62  Aligned_cols=100  Identities=11%  Similarity=0.129  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccc-cccCCCCeEEeecCCcccCCC----------C
Q psy2006          99 DQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREV-RRVRRCDIRLIDFGSATFDDE----------H  167 (351)
Q Consensus        99 ~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h-~d~k~~ni~l~Dfg~s~~~~~----------~  167 (351)
                      ..+..++..+..-|.+++.|.+...                 .+|.. ..-....++++|||+|+....          .
T Consensus       107 ~~~~qi~~~l~~lH~~~iiHrDiKp-----------------~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~  169 (299)
T d1ckia_         107 LLADQMISRIEYIHSKNFIHRDVKP-----------------DNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRE  169 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCCG-----------------GGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCB
T ss_pred             HHHHHHHHHHHHHHHCCeeeccCCH-----------------hhccccccCCCceeeeeccCcceeccccccccceeccc
Confidence            3456666666666555544444222                 23322 122345699999999975321          1


Q ss_pred             cccccCCCCccCCccccCCC----------------------------------------------------hhhHHHHH
Q psy2006         168 HSTIVSTRHYRAPERYMASD----------------------------------------------------DEEHRQLF  195 (351)
Q Consensus       168 ~~~~~~~~~~~~pe~~~~~~----------------------------------------------------~~~~~~~~  195 (351)
                      .....||+.|+|||.+....                                                    ...++++.
T Consensus       170 ~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  249 (299)
T d1ckia_         170 NKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFA  249 (299)
T ss_dssp             CCSCCCCSSSCCHHHHTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC-------HHHHHHHHHHSCHHHHTTTSCHHHH
T ss_pred             cCCcCCCccccCHHHHhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHHHHHHHhhcccCCCChhHhccCCCHHHH
Confidence            23468999999999543220                                                    00125578


Q ss_pred             HHHHHhhccCCCCCCChhhh
Q psy2006         196 DLISKMLEYEPSERISLSEA  215 (351)
Q Consensus       196 ~~i~~~L~~~p~~R~t~~e~  215 (351)
                      ++|..|+..+|.+||+++++
T Consensus       250 ~li~~cl~~~p~~RP~~~~i  269 (299)
T d1ckia_         250 TYLNFCRSLRFDDKPDYSYL  269 (299)
T ss_dssp             HHHHHHHHSCTTCCCCHHHH
T ss_pred             HHHHHHccCChhHCcCHHHH
Confidence            99999999999999997654

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=4.8e-06  Score=72.84  Aligned_cols=98  Identities=19%  Similarity=0.202  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC------cccccC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH------HSTIVS  173 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~------~~~~~~  173 (351)
                      .+..++..+...|.+++.|.+....                 +|+..  +.++++|+|||+|+.....      .....|
T Consensus       114 i~~qi~~gL~ylH~~~iiHrDlKp~-----------------Nill~--~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~g  174 (285)
T d1u59a_         114 LLHQVSMGMKYLEEKNFVHRDLAAR-----------------NVLLV--NRHYAKISDFGLSKALGADDSYYTARSAGKW  174 (285)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSGG-----------------GEEEE--ETTEEEECCCTTCEECTTCSCEECCCCSSCC
T ss_pred             HHHHHHHHHHHHHhCCeecCcCchh-----------------heeec--cCCceeeccchhhhccccccccccccccccc
Confidence            3667777777765555544442222                 22221  2456999999999763322      223467


Q ss_pred             CCCccCCccccC-----------------------C-----------------------ChhhHHHHHHHHHHhhccCCC
Q psy2006         174 TRHYRAPERYMA-----------------------S-----------------------DDEEHRQLFDLISKMLEYEPS  207 (351)
Q Consensus       174 ~~~~~~pe~~~~-----------------------~-----------------------~~~~~~~~~~~i~~~L~~~p~  207 (351)
                      |+.|+|||.+..                       .                       +...++++.++|.+|+..+|.
T Consensus       175 t~~y~aPE~~~~~~~~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li~~cl~~~p~  254 (285)
T d1u59a_         175 PLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWE  254 (285)
T ss_dssp             CGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGG
T ss_pred             CccccChHHHhCCCCCccchhhcchHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCCCCCcCCHHHHHHHHHHcCCCHh
Confidence            889999994221                       1                       112236788999999999999


Q ss_pred             CCCChhhhh
Q psy2006         208 ERISLSEAL  216 (351)
Q Consensus       208 ~R~t~~e~l  216 (351)
                      +|||+.+++
T Consensus       255 ~RPs~~~i~  263 (285)
T d1u59a_         255 DRPDFLTVE  263 (285)
T ss_dssp             GSCCHHHHH
T ss_pred             HCcCHHHHH
Confidence            999988763

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=1e-05  Score=71.58  Aligned_cols=100  Identities=13%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCC-------ccccc
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEH-------HSTIV  172 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~-------~~~~~  172 (351)
                      .+..++..+..-+..++.|.+...                 .+|+..  ...+++|+|||+++.....       .....
T Consensus       135 i~~qia~gL~~lH~~~iiHrDLK~-----------------~NILl~--~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~  195 (311)
T d1r0pa_         135 FGLQVAKGMKFLASKKFVHRDLAA-----------------RNCMLD--EKFTVKVADFGLARDMYDKEFDSVHNKTGAK  195 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCSG-----------------GGEEEC--TTCCEEECSSGGGCCTTTTTCCCTTCTTCSS
T ss_pred             HHHHHHHhhhhhcccCcccCCccH-----------------HhEeEC--CCCCEEEecccchhhccccccccceeccccc
Confidence            355666666666555554444222                 233321  3567999999999763222       22346


Q ss_pred             CCCCccCCccccCC----------------------------------------------ChhhHHHHHHHHHHhhccCC
Q psy2006         173 STRHYRAPERYMAS----------------------------------------------DDEEHRQLFDLISKMLEYEP  206 (351)
Q Consensus       173 ~~~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i~~~L~~~p  206 (351)
                      ||+.|++||.+...                                              +....+.+.++|.+|+..||
T Consensus       196 gt~~y~aPE~~~~~~~~~ksDI~SfGivl~El~t~~~p~~~~~~~~~~~~~i~~g~~~~~p~~~~~~l~~li~~cl~~dP  275 (311)
T d1r0pa_         196 LPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQPEYCPDPLYEVMLKCWHPKA  275 (311)
T ss_dssp             CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCC------CHHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSG
T ss_pred             ccccccChHHHhcCCCCChhHhhhhHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCCCCCcccCcHHHHHHHHHHcCCCH
Confidence            88999999943210                                              11123578899999999999


Q ss_pred             CCCCChhhhhcC
Q psy2006         207 SERISLSEALRH  218 (351)
Q Consensus       207 ~~R~t~~e~l~~  218 (351)
                      .+|||+.|++++
T Consensus       276 ~~RPs~~ei~~~  287 (311)
T d1r0pa_         276 EMRPSFSELVSR  287 (311)
T ss_dssp             GGSCCHHHHHHH
T ss_pred             hHCcCHHHHHHH
Confidence            999999998765

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=8.7e-06  Score=71.73  Aligned_cols=26  Identities=8%  Similarity=0.134  Sum_probs=22.9

Q ss_pred             HHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         192 RQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       192 ~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                      ..+.+++.+||..||.+|||+.|+++
T Consensus       265 ~~l~~li~~cl~~dp~~Rps~~ei~~  290 (303)
T d1vjya_         265 RVMAKIMRECWYANGAARLTALRIKK  290 (303)
T ss_dssp             HHHHHHHHTTCCSSGGGSCCHHHHHH
T ss_pred             HHHHHHHHHHcccCHhHCcCHHHHHH
Confidence            35789999999999999999999865

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=7.2e-06  Score=72.43  Aligned_cols=105  Identities=19%  Similarity=0.267  Sum_probs=72.5

Q ss_pred             CCCchHHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhcccc----ccccccccCCCCeEEeecCCcccCCCC--
Q psy2006          94 LPYSLDQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNK----KKREVRRVRRCDIRLIDFGSATFDDEH--  167 (351)
Q Consensus        94 ~~~~~~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~----~~i~h~d~k~~ni~l~Dfg~s~~~~~~--  167 (351)
                      ..++...+..++.|++.|            +.++..     ...+|.    .+|+..  +..+++|+|||+|+.....  
T Consensus       128 ~~~~~~~~~~i~~~ia~g------------l~~LH~-----~~ivHrDlk~~NiLld--~~~~~Kl~DFGla~~~~~~~~  188 (308)
T d1p4oa_         128 APPSLSKMIQMAGEIADG------------MAYLNA-----NKFVHRDLAARNCMVA--EDFTVKIGDFGMTRDIYETDY  188 (308)
T ss_dssp             CCCCHHHHHHHHHHHHHH------------HHHHHH-----TTCBCSCCSGGGEEEC--TTCCEEECCTTCCCGGGGGGC
T ss_pred             CCCCHHHHHHHHHHHHHH------------HHHHhh-----CCeeeceEcCCceeec--CCceEEEeecccceeccCCcc
Confidence            356888899999999998            333322     344453    333321  4668999999999763222  


Q ss_pred             ---cccccCCCCccCCccccCC----------------------------------------------ChhhHHHHHHHH
Q psy2006         168 ---HSTIVSTRHYRAPERYMAS----------------------------------------------DDEEHRQLFDLI  198 (351)
Q Consensus       168 ---~~~~~~~~~~~~pe~~~~~----------------------------------------------~~~~~~~~~~~i  198 (351)
                         .....+|+.|++||.+...                                              +...++.+.++|
T Consensus       189 ~~~~~~~~~t~~y~aPe~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~~~~~~~~i~~~~~~~~p~~~~~~l~~li  268 (308)
T d1p4oa_         189 YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVMEGGLLDKPDNCPDMLFELM  268 (308)
T ss_dssp             EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHHTTCCCCCCTTCCHHHHHHH
T ss_pred             eeeccceecccccCCHHHHccCCCCcccccccHHHHHHHHHhCCCCCCCCCCHHHHHHHHHhCCCCCCcccchHHHHHHH
Confidence               2234688999999943211                                              112236788999


Q ss_pred             HHhhccCCCCCCChhhhhc
Q psy2006         199 SKMLEYEPSERISLSEALR  217 (351)
Q Consensus       199 ~~~L~~~p~~R~t~~e~l~  217 (351)
                      .+|+..+|.+|||+.++++
T Consensus       269 ~~cl~~~P~~RPs~~~il~  287 (308)
T d1p4oa_         269 RMCWQYNPKMRPSFLEIIS  287 (308)
T ss_dssp             HHHTCSSGGGSCCHHHHHH
T ss_pred             HHHcCCChhHCcCHHHHHH
Confidence            9999999999999999876

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=2.5e-05  Score=68.56  Aligned_cols=68  Identities=16%  Similarity=0.222  Sum_probs=50.0

Q ss_pred             CCCeEEeecCCcccCCCC-----cccccCCCCccCCccccCC--------------------------------------
Q psy2006         150 RCDIRLIDFGSATFDDEH-----HSTIVSTRHYRAPERYMAS--------------------------------------  186 (351)
Q Consensus       150 ~~ni~l~Dfg~s~~~~~~-----~~~~~~~~~~~~pe~~~~~--------------------------------------  186 (351)
                      .+.++|+|||+++.....     .....+|+.|+|||.+...                                      
T Consensus       171 ~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~~~~~~~~i  250 (299)
T d1fgka_         171 DNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELFKLL  250 (299)
T ss_dssp             TCCEEECSTTCCCCGGGCCTTCCCTTSCCGGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHH
T ss_pred             CCCeEeccchhhccccccccccccccCCCChhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCCHHHHHHHH
Confidence            457899999999763222     2335788899999943211                                      


Q ss_pred             --------ChhhHHHHHHHHHHhhccCCCCCCChhhhhc
Q psy2006         187 --------DDEEHRQLFDLISKMLEYEPSERISLSEALR  217 (351)
Q Consensus       187 --------~~~~~~~~~~~i~~~L~~~p~~R~t~~e~l~  217 (351)
                              +...++.+.++|.+||.+||.+|||+.|+++
T Consensus       251 ~~~~~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~  289 (299)
T d1fgka_         251 KEGHRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE  289 (299)
T ss_dssp             HTTCCCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HcCCCCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHH
Confidence                    1112366889999999999999999999875

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=8.6e-06  Score=70.72  Aligned_cols=98  Identities=16%  Similarity=0.295  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCC------CcccccC
Q psy2006         100 QVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDE------HHSTIVS  173 (351)
Q Consensus       100 ~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~------~~~~~~~  173 (351)
                      .++.++..+...|++++.|.+.+.                 .+|+..  ..++++++|||.+.....      .....+|
T Consensus       116 i~~qi~~al~~lH~~~iiHrDiKP-----------------~NIll~--~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~G  176 (277)
T d1o6ya_         116 VIADACQALNFSHQNGIIHRDVKP-----------------ANIMIS--ATNAVKVMDFGIARAIADSGNSVTQTAAVIG  176 (277)
T ss_dssp             HHHHHHHHHHHHHHTTEECCCCSG-----------------GGEEEE--TTSCEEECCCTTCEECC--------------
T ss_pred             HHHHHHHHHHHHHhCCccCccccC-----------------cccccC--ccccceeehhhhhhhhccccccccccccccC
Confidence            356667777666555554444222                 222221  356789999999865222      2344689


Q ss_pred             CCCccCCccccCCC------------------------------------------------hhhHHHHHHHHHHhhccC
Q psy2006         174 TRHYRAPERYMASD------------------------------------------------DEEHRQLFDLISKMLEYE  205 (351)
Q Consensus       174 ~~~~~~pe~~~~~~------------------------------------------------~~~~~~~~~~i~~~L~~~  205 (351)
                      |+.|+|||.+....                                                ...++++.++|.+||.+|
T Consensus       177 t~~Y~aPE~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~l~~li~~~L~~d  256 (277)
T d1o6ya_         177 TAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHEGLSADLDAVVLKALAKN  256 (277)
T ss_dssp             --TTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCGGGTSSSCCHHHHHHHHHHTCSS
T ss_pred             cccccCHHHHcCCCCCcceecccchHHHHHHHhCCCCCCCcCHHHHHHHHHhcCCCCCchhccCCCHHHHHHHHHHccCC
Confidence            99999999543220                                                112367889999999999


Q ss_pred             CCCCC-Chhhhh
Q psy2006         206 PSERI-SLSEAL  216 (351)
Q Consensus       206 p~~R~-t~~e~l  216 (351)
                      |.+|+ |+++++
T Consensus       257 p~~R~~sa~~l~  268 (277)
T d1o6ya_         257 PENRYQTAAEMR  268 (277)
T ss_dssp             GGGSCSSHHHHH
T ss_pred             HhHCHhHHHHHH
Confidence            99999 566653

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=1.4e-05  Score=69.26  Aligned_cols=99  Identities=11%  Similarity=0.197  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccccCCCCeEEeecCCcccCCCCc------cccc
Q psy2006          99 DQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRRVRRCDIRLIDFGSATFDDEHH------STIV  172 (351)
Q Consensus        99 ~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d~k~~ni~l~Dfg~s~~~~~~~------~~~~  172 (351)
                      ..+..++..+..-|++++.|.....                 .+|.. + ...+++|+|||+|+......      ....
T Consensus       115 ~~~~qi~~gl~ylH~~~iiHrDikp-----------------~NIll-~-~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~  175 (273)
T d1u46a_         115 RYAVQVAEGMGYLESKRFIHRDLAA-----------------RNLLL-A-TRDLVKIGDFGLMRALPQNDDHYVMQEHRK  175 (273)
T ss_dssp             HHHHHHHHHHHHHHHTTEECSCCCG-----------------GGEEE-E-ETTEEEECCCTTCEECCC-CCEEEC-----
T ss_pred             HHHHHHHHHHHHhhhCCEeeeeecH-----------------HHhcc-c-cccceeeccchhhhhcccCCCcceecCccc
Confidence            3466777777776555554443221                 22221 1 24569999999998643332      2245


Q ss_pred             CCCCccCCccccC-----------------------C------------------------ChhhHHHHHHHHHHhhccC
Q psy2006         173 STRHYRAPERYMA-----------------------S------------------------DDEEHRQLFDLISKMLEYE  205 (351)
Q Consensus       173 ~~~~~~~pe~~~~-----------------------~------------------------~~~~~~~~~~~i~~~L~~~  205 (351)
                      ++..|+|||.+..                       .                        ....+..+.++|.+|+..|
T Consensus       176 ~~~~~~aPE~~~~~~~~~~~Di~S~Gvil~emlt~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~li~~cl~~d  255 (273)
T d1u46a_         176 VPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLPRPEDCPQDIYNVMVQCWAHK  255 (273)
T ss_dssp             CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCCCCTTCCHHHHHHHHHHTCSS
T ss_pred             cCcccCCHHHHhCCCCCcchhhhhhHHHHHHHHhCCCCCCCCcCHHHHHHHHHhCCCCCCCcccccHHHHHHHHHHcCCC
Confidence            6778999993221                       1                        1122367889999999999


Q ss_pred             CCCCCChhhhh
Q psy2006         206 PSERISLSEAL  216 (351)
Q Consensus       206 p~~R~t~~e~l  216 (351)
                      |.+|||+++++
T Consensus       256 p~~RPt~~ei~  266 (273)
T d1u46a_         256 PEDRPTFVALR  266 (273)
T ss_dssp             GGGSCCHHHHH
T ss_pred             hhHCcCHHHHH
Confidence            99999998874

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.38  E-value=0.0014  Score=55.19  Aligned_cols=75  Identities=15%  Similarity=0.091  Sum_probs=55.2

Q ss_pred             cccceEEEEEEeecCcEEEEEEecchh-hhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-CCCH
Q psy2006           7 VASNHVCTNVVYEVDSVVALKIIKNVE-KYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-GLSV   84 (351)
Q Consensus         7 G~~g~V~~~~~~~~~~~vAiK~~~~~~-~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-g~sL   84 (351)
                      ++.+.||+..  .+++.+.+|+..... .....+.+|..+++.|...-+     |.+++.+...++..++||+++ |..+
T Consensus        25 ~s~~~v~rv~--~~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vp-----vP~vl~~~~~~~~~~lv~~~l~G~~~   97 (263)
T d1j7la_          25 MSPAKVYKLV--GENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLP-----VPKVLHFERHDGWSNLLMSEADGVLC   97 (263)
T ss_dssp             CSSSEEEEEE--CSSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSC-----CCCEEEEEEETTEEEEEEECCSSEEH
T ss_pred             CCCCcEEEEE--eCCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCC-----CCcEEEEEecCCceEEEEEecccccc
Confidence            3346899886  567778899886532 233457789999999863222     788999999899999999999 6676


Q ss_pred             HHHH
Q psy2006          85 FDFL   88 (351)
Q Consensus        85 ~~~l   88 (351)
                      .+..
T Consensus        98 ~~~~  101 (263)
T d1j7la_          98 SEEY  101 (263)
T ss_dssp             HHHT
T ss_pred             cccc
Confidence            6543

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.27  E-value=0.00018  Score=62.59  Aligned_cols=100  Identities=10%  Similarity=0.139  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCchHHHHHHhHhHHhhhhccccccccccc---cCCCCeEEeecCCcccCCC---------
Q psy2006          99 DQVRHMSYQLIYAKENNYLPYSLDQVRHMSYQLIYAVDYNNKKKREVRR---VRRCDIRLIDFGSATFDDE---------  166 (351)
Q Consensus        99 ~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~d---~k~~ni~l~Dfg~s~~~~~---------  166 (351)
                      ..++.++..+...|+.++.|.+...                 .+|....   ...++++|+|||+|+....         
T Consensus       105 ~i~~q~~~~l~~lH~~giiHrDiKp-----------------~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~  167 (293)
T d1csna_         105 MAAKQMLARVQSIHEKSLVYRDIKP-----------------DNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPY  167 (293)
T ss_dssp             HHHHHHHHHHHHHHTTTEECCCCCG-----------------GGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCC
T ss_pred             HHHHHHHHHHHHHHHCCceeccCCc-----------------cceeecCcccccCCceEEcccceeEEcccCccccceee
Confidence            3466666667666555554444222                 2333221   2345699999999975221         


Q ss_pred             -CcccccCCCCccCCccccCCCh----------------------------------------------------hhHHH
Q psy2006         167 -HHSTIVSTRHYRAPERYMASDD----------------------------------------------------EEHRQ  193 (351)
Q Consensus       167 -~~~~~~~~~~~~~pe~~~~~~~----------------------------------------------------~~~~~  193 (351)
                       ......||+.|+|||.+.....                                                    ...++
T Consensus       168 ~~~~~~~GT~~y~aPE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~p~~  247 (293)
T d1csna_         168 REKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEE  247 (293)
T ss_dssp             CCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHSCHHHHTTTSCHH
T ss_pred             cccCceEEchhhcCHHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchhHHHHHHHHHhccCCCChHHhcCCCCHH
Confidence             1234579999999995543210                                                    01145


Q ss_pred             HHHHHHHhhccCCCCCCChhhh
Q psy2006         194 LFDLISKMLEYEPSERISLSEA  215 (351)
Q Consensus       194 ~~~~i~~~L~~~p~~R~t~~e~  215 (351)
                      +.+++..|+..+|++||+.+.+
T Consensus       248 l~~ii~~~~~~~~~~rP~y~~l  269 (293)
T d1csna_         248 FYKYMHYARNLAFDATPDYDYL  269 (293)
T ss_dssp             HHHHHHHHHHCCTTCCCCHHHH
T ss_pred             HHHHHHHHhcCCcccCcCHHHH
Confidence            7788899999999999986554

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=96.90  E-value=0.0031  Score=52.68  Aligned_cols=76  Identities=14%  Similarity=0.092  Sum_probs=54.2

Q ss_pred             cccCccc-ceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEEEEEecc-
Q psy2006           3 SLNCVAS-NHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMCIAFEIL-   80 (351)
Q Consensus         3 ~iG~G~~-g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~lV~E~~-   80 (351)
                      .+..|.. +.||+... ..+..+.+|......  ...+..|...|+.|....-.    |.+++.+...++..++||+++ 
T Consensus        17 ~~~~G~s~~~v~r~~~-~~~~~~vlK~~~~~~--~~~l~~E~~~l~~L~~~gvp----vP~v~~~~~~~~~~~~v~~~i~   89 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSA-QGRPVLFVKTDLSGA--LNELQDEAARLSWLATTGVP----CAAVLDVVTEAGRDWLLLGEVP   89 (255)
T ss_dssp             ECSCTTSSCEEEEEEC-TTSCCEEEEEECSCT--TSCHHHHHHHHHHHHTTTCC----BCCEEEEEECSSCEEEEEECCS
T ss_pred             EcCCcccCCeEEEEEe-CCCCEEEEEeCCccC--HhHHHHHHHHHHHHHhcCCC----CCceeeecccccceEEEEEeee
Confidence            3455553 67898875 456668889876432  34567899999998654422    778888888888999999999 


Q ss_pred             CCCHH
Q psy2006          81 GLSVF   85 (351)
Q Consensus        81 g~sL~   85 (351)
                      |.++.
T Consensus        90 G~~~~   94 (255)
T d1nd4a_          90 GQDLL   94 (255)
T ss_dssp             SEETT
T ss_pred             ccccc
Confidence            54543

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.58  E-value=0.0083  Score=53.93  Aligned_cols=84  Identities=24%  Similarity=0.124  Sum_probs=52.4

Q ss_pred             ccccCcccceEEEEEEeecCcEEEEEEecch--------hhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeE
Q psy2006           2 CSLNCVASNHVCTNVVYEVDSVVALKIIKNV--------EKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHM   73 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~--------~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~   73 (351)
                      +.||.|....||+..+..+++.|.+|.-...        ....++...|..+|+.+....|   ..+.+++.+  +....
T Consensus        32 ~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p---~~vP~v~~~--d~~~~  106 (392)
T d2pula1          32 QEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVP---HLVPRVFYS--DTEMA  106 (392)
T ss_dssp             EECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCG---GGSCCEEEE--ETTTT
T ss_pred             EEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCC---CCcceEEEE--cCCCC
Confidence            5799999999999998777889999975321        1122345679999988753222   126666644  44566


Q ss_pred             EEEEecc-CCC-HHHHHHh
Q psy2006          74 CIAFEIL-GLS-VFDFLKE   90 (351)
Q Consensus        74 ~lV~E~~-g~s-L~~~l~~   90 (351)
                      ++|||++ +.. +.+.+..
T Consensus       107 ~lvmE~L~~~~~~~~~l~~  125 (392)
T d2pula1         107 VTVMEDLSHLKIARKGLIE  125 (392)
T ss_dssp             EEEECCCTTSEEHHHHHHH
T ss_pred             EEEEeccCCcccchhhhcc
Confidence            7899999 433 4444433

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.013  Score=51.07  Aligned_cols=68  Identities=12%  Similarity=0.047  Sum_probs=46.1

Q ss_pred             ceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeee-----eeEeeCCeEEEEEeccCC
Q psy2006          10 NHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKML-----DWFDYHGHMCIAFEILGL   82 (351)
Q Consensus        10 g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~-----~~f~~~~~~~lV~E~~g~   82 (351)
                      ..||++.. .+|+.|++|+........+.+..|...|..|....-.    |+..+     ..+...+..+.|+++++|
T Consensus        36 N~vy~v~~-~dg~~~VlK~~rp~~~s~~~i~~E~~~l~~L~~~gip----v~~p~~~~g~~~~~~~~~~~~l~~~~~G  108 (325)
T d1zyla1          36 NRVYQFQD-EDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVP----VAAPVAFNGQTLLNHQGFYFAVFPSVGG  108 (325)
T ss_dssp             SEEEEECC-TTCCCEEEEEECTTTSCHHHHHHHHHHHHHHHHTTCS----BCCCCCBTTBSCEEETTEEEEEEECCCC
T ss_pred             ceeEEEEc-CCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHhcCCC----CCCceecCCCeeeeeeeEEEEEEeecCC
Confidence            47999886 6788899999976444456778899999998643321    22211     122345678999999954

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=93.37  E-value=0.049  Score=46.72  Aligned_cols=48  Identities=8%  Similarity=0.052  Sum_probs=29.9

Q ss_pred             cccCcccceEEEEEEeecCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCC
Q psy2006           3 SLNCVASNHVCTNVVYEVDSVVALKIIKNVEKYREAARLEINALQKIGEKD   53 (351)
Q Consensus         3 ~iG~G~~g~V~~~~~~~~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~   53 (351)
                      .|..|--.+.|+...  ++..|++|++... ...+.+..|+++|.+|...+
T Consensus        25 ~i~~G~~N~ny~v~t--~~g~yVLri~~~~-~~~~~l~~~~~~l~~L~~~g   72 (316)
T d2ppqa1          25 GIAEGVENSNFLLHT--TKDPLILTLYEKR-VEKNDLPFFLGLMQHLAAKG   72 (316)
T ss_dssp             EECC---EEEEEEEE--SSCCEEEEEECC----CCHHHHHHHHHHHHHHTT
T ss_pred             cCCCCcccCeEEEEE--CCCcEEEEEcCCC-CCHHHHHHHHHHHHhhhhcc
Confidence            456677788898874  3445889999653 23455677899999986533

>d1nw1a_ d.144.1.8 (A:) Choline kinase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Choline kinase
domain: Choline kinase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=87.63  E-value=2.6  Score=36.59  Aligned_cols=70  Identities=19%  Similarity=0.090  Sum_probs=48.5

Q ss_pred             ccccCcccceEEEEEEee-------cCcEEEEEEecchhhhhHHHHHHHHHHHHhCCCCCCCCcceeeeeeeEeeCCeEE
Q psy2006           2 CSLNCVASNHVCTNVVYE-------VDSVVALKIIKNVEKYREAARLEINALQKIGEKDPNGRHLCVKMLDWFDYHGHMC   74 (351)
Q Consensus         2 ~~iG~G~~g~V~~~~~~~-------~~~~vAiK~~~~~~~~~~~~~~E~~~l~~l~h~~~~g~~~Iv~l~~~f~~~~~~~   74 (351)
                      ++|+-|....+|++....       ..+.|.+++.-.... .-...+|..+++.+...+     -..+++.+|..    .
T Consensus        48 ~~l~GGltN~~y~v~~~~~~~~~~~~~~~vllRi~g~~~~-~idr~~E~~i~~~ls~~g-----l~Pkll~~~~~----g  117 (395)
T d1nw1a_          48 SRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNPET-ESHLVAESVIFTLLSERH-----LGPKLYGIFSG----G  117 (395)
T ss_dssp             EEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSCCC-HHHHHHHHHHHHHHHHTT-----SSSCEEEEETT----E
T ss_pred             EEcCCccccceEEEEeCCCCccccCCCCcEEEEecCCcch-hhHHHHHHHHHHHHHhCC-----CCCeEEEEcCC----c
Confidence            568889999999988642       346788888763222 234567999999986433     14477777653    6


Q ss_pred             EEEeccC
Q psy2006          75 IAFEILG   81 (351)
Q Consensus        75 lV~E~~g   81 (351)
                      +|+||+.
T Consensus       118 ~I~efi~  124 (395)
T d1nw1a_         118 RLEEYIP  124 (395)
T ss_dssp             EEECCCC
T ss_pred             eEEEEec
Confidence            8899993