Psyllid ID: psy2024

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350--
METKHSSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINFLMLISCGNNTNQPTKSHLYIILFCSSLCDSVKMETKHSSRHHENKYKYGEGEKSKLFTVENKEKIVLHPSFETKVRATLTRLVEDIDMSTRQATSFEIMTTLSMSGPVDRPCFITSTIREHMTPNILTRRRS
ccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHcccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccccEEEEccccccHHHHHHHHHHcccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHccccccccccEEEEEHHcccccccccccHHHHHHHHccccccccccc
cccccccccccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccEHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccHHHHHHEEEccccccccHHcccccccccccccccccccccEEEEEEcccEEEEccccHHHHHHHHHHHHHHccccccccccEHEHHEcccccccccccEEEHHHHHHccccHHHcccc
metkhssrhhqnkykygegeksklftvenkekivlhpsfETKVWATLTRLIEDidseyetsdkfrdhdysvyvgtsgQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRrfsflngdagpIAVSALIYEALGKQEKLESSVQKLKALAPhvvdlrsdipdeilygRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGqnlsarkksrvpLINFLMLIscgnntnqptksHLYIILFCSSLcdsvkmetkhssrhhenkykygegeksklftvenkekivlhpsfETKVRATLTRLVEDIDMSTRQATSFEIMTTLsmsgpvdrpcfitstirehmtpniltrrrs
metkhssrhhqnkykygegekskLFTVENkekivlhpsfetkvWATLTRLIEDIDseyetsdkfrdhdYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRrfsflngdagpIAVSALIYEALGKQEKLESSVQKLKALaphvvdlrsdIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSgqnlsarkksrvPLINFLMLISCGNNTNQPTKSHLYIILFCSSLCDSVKMETKhssrhhenkykygegeksklFTVENkekivlhpsfetkvrATLTRLVEDIDMSTRQATSFEImttlsmsgpvdRPCFitstirehmtpniltrrrs
METKHSSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINFLMLISCGNNTNQPTKSHLYIILFCSSLCDSVKMETKHSSRHHENKYKYGEGEKSKLFTVENKEKIVLHPSFETKVRATLTRLVEDIDMSTRQATSFEIMTTLSMSGPVDRPCFITSTIREHMTPNILTRRRS
***********************LFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINFLMLISCGNNTNQPTKSHLYIILFCSSLCDSV************************LFTVENKEKIVLHPSFETKVRATLTRLVEDIDMSTRQATSFEIMTTLSMSGPVDRPCFITSTIRE************
*****SSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIER***********FLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNL*A**KSRVPLINFLMLISCGNNTNQPTKSHLYIILFCSSLCDSVKMETKHSSRH********************KEKIVLHPSFETKVRATLTRLVEDIDMSTRQATSFEIMTTLSMSGPVDRPCFITSTIREHMTPNIL*R***
*************YKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINFLMLISCGNNTNQPTKSHLYIILFCSSLCDSVK************KYKYGEGEKSKLFTVENKEKIVLHPSFETKVRATLTRLVEDIDMSTRQATSFEIMTTLSMSGPVDRPCFITSTIREHMTP********
********HHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINFLMLISCGNNTNQPTKSHLYIILFCSSLCDSVKME***SSRHHENKYKYGEGEKSKLFTVENKEKIVLHPSFETKVRATLTRLVEDIDMSTRQATSFEIMTTLSMSGPVDRPCFITSTIREHMTP********
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METKHSSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINFLMLISCGNNTNQPTKSHLYIILFCSSLCDSVKMETKHSSRHHENKYKYGEGEKSKLFTVENKEKIVLHPSFETKVRATLTRLVEDIDMSTRQATSFEIMTTLSMSGPVDRPCFITSTIREHMTPNILTRRRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query352 2.2.26 [Sep-21-2011]
Q9NS86450 LanC-like protein 2 OS=Ho yes N/A 0.514 0.402 0.401 3e-31
Q9JJK2450 LanC-like protein 2 OS=Mu yes N/A 0.517 0.404 0.386 4e-31
Q90ZL2405 LanC-like protein 1 OS=Da no N/A 0.536 0.466 0.352 3e-28
O43813399 LanC-like protein 1 OS=Ho no N/A 0.5 0.441 0.342 3e-23
O89112399 LanC-like protein 1 OS=Mu no N/A 0.502 0.443 0.322 5e-23
Q9QX69399 LanC-like protein 1 OS=Ra no N/A 0.502 0.443 0.317 6e-22
Q6ZV70420 LanC-like protein 3 OS=Ho no N/A 0.414 0.347 0.294 7e-09
Q8CD19420 LanC-like protein 3 OS=Mu no N/A 0.411 0.345 0.298 8e-09
Q9Y0Y7419 LanC-like protein 3 homol yes N/A 0.431 0.362 0.284 2e-08
Q29HZ1420 LanC-like protein 3 homol no N/A 0.417 0.35 0.291 3e-08
>sp|Q9NS86|LANC2_HUMAN LanC-like protein 2 OS=Homo sapiens GN=LANCL2 PE=1 SV=1 Back     alignment and function desciption
 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 113/187 (60%), Gaps = 6/187 (3%)

Query: 34  VLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSK 93
           ++H +F  ++   +  L++ ++   +T+D    HD S Y G +G A+ Y   Y+ T D  
Sbjct: 69  IIH-NFIRRIQTKIKDLLQQMEEGLKTADP---HDCSAYTGWTGIALLYLQLYRVTCDQT 124

Query: 94  YLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPH 153
           YL ++   ++R+L+NL  RR +FL GDAGP+AV A+IY  L    + +  V KL  L   
Sbjct: 125 YLLRSLDYVKRTLRNLNGRRVTFLCGDAGPLAVGAVIYHKLRSDCESQECVTKLLQLQRS 184

Query: 154 VVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLS--ARK 211
           VV   SD+PDE+LYGRAGYLY+LL++N  I    +  S I +VV++I+ SG+ LS   RK
Sbjct: 185 VVCQESDLPDELLYGRAGYLYALLYLNTEIGPGTVCESAIKEVVNAIIESGKTLSREERK 244

Query: 212 KSRVPLI 218
             R PL+
Sbjct: 245 TERCPLL 251
Necessary for abscisic acid (ABA) binding on the cell membrane and activation of the ABA signaling pathway in granulocytes.
Homo sapiens (taxid: 9606)
>sp|Q9JJK2|LANC2_MOUSE LanC-like protein 2 OS=Mus musculus GN=Lancl2 PE=1 SV=1 Back     alignment and function description
>sp|Q90ZL2|LANC1_DANRE LanC-like protein 1 OS=Danio rerio GN=lancl1 PE=2 SV=1 Back     alignment and function description
>sp|O43813|LANC1_HUMAN LanC-like protein 1 OS=Homo sapiens GN=LANCL1 PE=1 SV=1 Back     alignment and function description
>sp|O89112|LANC1_MOUSE LanC-like protein 1 OS=Mus musculus GN=Lancl1 PE=1 SV=1 Back     alignment and function description
>sp|Q9QX69|LANC1_RAT LanC-like protein 1 OS=Rattus norvegicus GN=Lancl1 PE=2 SV=2 Back     alignment and function description
>sp|Q6ZV70|LANC3_HUMAN LanC-like protein 3 OS=Homo sapiens GN=LANCL3 PE=2 SV=2 Back     alignment and function description
>sp|Q8CD19|LANC3_MOUSE LanC-like protein 3 OS=Mus musculus GN=Lancl3 PE=2 SV=2 Back     alignment and function description
>sp|Q9Y0Y7|LANC3_DROME LanC-like protein 3 homolog OS=Drosophila melanogaster GN=CG2061 PE=1 SV=1 Back     alignment and function description
>sp|Q29HZ1|LANC3_DROPS LanC-like protein 3 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15215 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
346469053424 hypothetical protein [Amblyomma maculatu 0.428 0.356 0.476 4e-34
260836847403 hypothetical protein BRAFLDRAFT_93787 [B 0.511 0.446 0.419 8e-34
427797079418 Putative lanthionine synthetase c-like p 0.428 0.361 0.483 2e-33
242003170403 conserved hypothetical protein [Pediculu 0.576 0.503 0.386 2e-33
345318156 471 PREDICTED: lanC-like protein 2-like [Orn 0.522 0.390 0.396 2e-32
131889878435 lanC-like protein 2 [Danio rerio] gi|124 0.548 0.443 0.376 2e-31
395516808 470 PREDICTED: lanC-like protein 2 [Sarcophi 0.505 0.378 0.404 2e-31
126336556 468 PREDICTED: lanC-like protein 2 [Monodelp 0.514 0.386 0.408 3e-31
327275143431 PREDICTED: lanC-like protein 2-like [Ano 0.519 0.424 0.404 2e-30
395836250 503 PREDICTED: lanC-like protein 2 [Otolemur 0.502 0.351 0.401 4e-30
>gi|346469053|gb|AEO34371.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 72/151 (47%), Positives = 104/151 (68%)

Query: 68  DYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVS 127
           D SVY GT+G A+ Y        D+ YL++A   +ER L NLK+RR+SFL GD GP+A+ 
Sbjct: 81  DSSVYTGTTGVALMYMRLSDVLQDTSYLNRALPFVERQLGNLKDRRYSFLCGDPGPLAIG 140

Query: 128 ALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVN 187
           A +Y  LG+ +   + V+KL +L+ +VV   +DIPDE+LYGR GYL++LL+V KH+    
Sbjct: 141 ADLYNRLGRSQDSHNLVKKLLSLSKYVVPATADIPDELLYGRVGYLFALLYVRKHLSPTA 200

Query: 188 IEASLIHQVVDSILRSGQNLSARKKSRVPLI 218
           ++ SL+  VV+++L SGQ LSA +KSR PL+
Sbjct: 201 VDDSLLRSVVEAVLSSGQQLSAEEKSRCPLM 231

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|260836847|ref|XP_002613417.1| hypothetical protein BRAFLDRAFT_93787 [Branchiostoma floridae] gi|229298802|gb|EEN69426.1| hypothetical protein BRAFLDRAFT_93787 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|427797079|gb|JAA63991.1| Putative lanthionine synthetase c-like protein 1, partial [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|242003170|ref|XP_002422637.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212505438|gb|EEB09899.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|345318156|ref|XP_001507419.2| PREDICTED: lanC-like protein 2-like [Ornithorhynchus anatinus] Back     alignment and taxonomy information
>gi|131889878|ref|NP_001076472.1| lanC-like protein 2 [Danio rerio] gi|124481584|gb|AAI33081.1| Zgc:158293 protein [Danio rerio] Back     alignment and taxonomy information
>gi|395516808|ref|XP_003762577.1| PREDICTED: lanC-like protein 2 [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|126336556|ref|XP_001379314.1| PREDICTED: lanC-like protein 2 [Monodelphis domestica] Back     alignment and taxonomy information
>gi|327275143|ref|XP_003222333.1| PREDICTED: lanC-like protein 2-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|395836250|ref|XP_003791072.1| PREDICTED: lanC-like protein 2 [Otolemur garnettii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query352
ZFIN|ZDB-GENE-070209-191435 zgc:158293 "zgc:158293" [Danio 0.548 0.443 0.391 6.7e-33
UNIPROTKB|E1C3R4455 LANCL2 "Uncharacterized protei 0.502 0.389 0.373 8.8e-31
UNIPROTKB|Q9NS86450 LANCL2 "LanC-like protein 2" [ 0.514 0.402 0.401 4.9e-30
MGI|MGI:1919085450 Lancl2 "LanC (bacterial lantib 0.517 0.404 0.386 7.9e-30
UNIPROTKB|I3LIW1412 LANCL2 "Uncharacterized protei 0.514 0.439 0.385 1e-29
UNIPROTKB|A6QPG6433 LANCL2 "Uncharacterized protei 0.505 0.411 0.387 7.1e-29
RGD|1310809450 Lancl2 "LanC lantibiotic synth 0.517 0.404 0.375 1.5e-28
UNIPROTKB|F1PEY8366 LANCL2 "Uncharacterized protei 0.431 0.415 0.435 2.2e-27
ZFIN|ZDB-GENE-040924-1423 lancl1 "LanC antibiotic synthe 0.553 0.460 0.352 3.5e-27
UNIPROTKB|F1N9V4334 LANCL1 "Uncharacterized protei 0.502 0.529 0.360 2.2e-25
ZFIN|ZDB-GENE-070209-191 zgc:158293 "zgc:158293" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 79/202 (39%), Positives = 124/202 (61%)

Query:    19 GEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQ 78
             G+  +LF    K    +  +F+ KV + +  L++ ++   +T+D    HD+S Y G +G 
Sbjct:    48 GDTGELFDRTGK----ISDAFQKKVQSKIKDLLQQMEEGLKTADP---HDFSTYTGWTGV 100

Query:    79 AMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQE 138
             A+ Y   YQ T +  +L ++   ++R+L+NL  RR SFL GDAGP+AV A+++  L  Q 
Sbjct:   101 ALLYLHLYQATQEVSHLQRSLDYVKRTLRNLNGRRVSFLCGDAGPLAVGAVVHHHLKNQT 160

Query:   139 KLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVD 198
             + +  + KL  L   V+   SD+PDE+LYGRAGYLY+LL+VN+ I    ++ + I +VV 
Sbjct:   161 ESQDCISKLLQLQRSVLSPDSDVPDELLYGRAGYLYALLYVNREIAPDAVDEATIAKVVT 220

Query:   199 SILRSGQNLSAR-KKS-RVPLI 218
             +I+ SG+NLS   KKS R PL+
Sbjct:   221 AIVESGKNLSKEEKKSERCPLL 242
GO:0003824 "catalytic activity" evidence=IEA
UNIPROTKB|E1C3R4 LANCL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NS86 LANCL2 "LanC-like protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1919085 Lancl2 "LanC (bacterial lantibiotic synthetase component C)-like 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3LIW1 LANCL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|A6QPG6 LANCL2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|1310809 Lancl2 "LanC lantibiotic synthetase component C-like 2 (bacterial)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1PEY8 LANCL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040924-1 lancl1 "LanC antibiotic synthetase component C-like 1 (bacterial)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1N9V4 LANCL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
cd04794343 cd04794, euk_LANCL, eukaryotic Lanthionine synthet 7e-37
pfam05147352 pfam05147, LANC_like, Lanthionine synthetase C-lik 7e-27
cd04434343 cd04434, LanC_like, LanC-like proteins 2e-22
pfam05147352 pfam05147, LANC_like, Lanthionine synthetase C-lik 7e-09
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 6e-06
TIGR03897931 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosyn 5e-05
cd04792825 cd04792, LanM-like, LanM-like proteins 5e-05
cd04792825 cd04792, LanM-like, LanM-like proteins 0.001
>gnl|CDD|240111 cd04794, euk_LANCL, eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information 
 Score =  135 bits (342), Expect = 7e-37
 Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 5/151 (3%)

Query: 72  YVGTSGQAMFYYIYYQR----THDSKYLDKAQKLIERSLKNLKN-RRFSFLNGDAGPIAV 126
           Y G +G A  +   Y+     T+D  YL  A + I+ SL+ + + RR SFL G+AG  AV
Sbjct: 1   YTGAAGIAYLFLQLYEVPPLLTNDQTYLSWALEYIKASLRAIPDDRRISFLCGNAGVYAV 60

Query: 127 SALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKSV 186
            A +Y  L  +++++  + K   L   VV   S +PDE+LYGRAGYLY+LLF+NK     
Sbjct: 61  GAAVYHYLKDEDEVDEFLSKFLQLLESVVSPDSGLPDELLYGRAGYLYALLFLNKKFGFK 120

Query: 187 NIEASLIHQVVDSILRSGQNLSARKKSRVPL 217
            I +SLI  + D+IL SG+  +A+ ++  PL
Sbjct: 121 KIPSSLIKSICDAILESGRTGAAKYRAPCPL 151

This family contains the lanthionine synthetase C-like proteins 1 and 2 which are related to the bacterial lanthionine synthetase components C (LanC). LANCL1 and LANCL2 (testes-specific adriamycin sensitivity protein) are thought to be peptide-modifying enzyme components in eukaryotic cells. Both proteins are produced in large quantities in the brain and testes and may have role in the immune surveillance of these organs. Length = 343
>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein Back     alignment and domain information
>gnl|CDD|239881 cd04434, LanC_like, LanC-like proteins Back     alignment and domain information
>gnl|CDD|218467 pfam05147, LANC_like, Lanthionine synthetase C-like protein Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|234385 TIGR03897, lanti_2_LanM, type 2 lantibiotic biosynthesis protein LanM Back     alignment and domain information
>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins Back     alignment and domain information
>gnl|CDD|240109 cd04792, LanM-like, LanM-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 352
KOG2787|consensus403 100.0
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 99.79
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 99.37
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 99.16
cd04434343 LanC_like LanC-like proteins. LanC is the cyclase 98.91
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 98.81
cd04792825 LanM-like LanM-like proteins. LanM is a bifunction 98.73
cd04794343 euk_LANCL eukaryotic Lanthionine synthetase C-like 98.65
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 98.57
cd04791321 LanC_SerThrkinase Lanthionine synthetase C-like do 98.42
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 98.37
cd04793382 LanC LanC is the cyclase enzyme of the lanthionine 98.35
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 98.35
PF05147355 LANC_like: Lanthionine synthetase C-like protein; 98.21
COG4403963 LcnDR2 Lantibiotic modifying enzyme [Defense mecha 97.28
KOG2787|consensus403 95.16
COG1331667 Highly conserved protein containing a thioredoxin 85.12
>KOG2787|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.6e-48  Score=375.32  Aligned_cols=226  Identities=29%  Similarity=0.431  Sum_probs=192.8

Q ss_pred             CCCCCCCCCCCCCCCCccc-cc---c-ccccccccccchHHHHHHHHHHHHHHHhhcccccCCCCCCCCCceeechHHHH
Q psy2024           5 HSSRHHQNKYKYGEGEKSK-LF---T-VENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQA   79 (352)
Q Consensus         5 M~~RyF~Npf~dy~~~~~~-~~---~-~~~~~~~~l~~~f~~~L~~ai~~lL~~i~~~~~~~d~~~~~dgglYtG~aGIA   79 (352)
                      |..|+|+|||||...+... +-   + .+++    +-.++..++..++++.+.+..-+  .. +..+.|+++|||++|||
T Consensus         1 me~r~~~np~pd~a~G~~e~~~~~~~e~~~~----~~~e~~~r~~~~ikd~~~~~~~~--~S-~d~~~d~tlYtG~~GiA   73 (403)
T KOG2787|consen    1 MERRAFVNPFPDDASGENETVGSEPDEPTGK----LFTEFIKRLATKIKDLVVEMTWG--KS-GDEVRDGTLYTGWLGIA   73 (403)
T ss_pred             CcccccCCCCcccccCCCccccCCCcccccc----cHHHHHHHHHHHHHHHHHHHHhc--cc-CCCCcCCceeechHHHH
Confidence            6789999999998654322 11   1 1122    22244555555666666554333  21 22378999999999999


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHHH-hhccCCCccccCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhhchhccCCC
Q psy2024          80 MFYYIYYQRTHDSKYLDKAQKLIERSL-KNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLR  158 (352)
Q Consensus        80 YmflrL~~~~~d~~yL~~A~e~I~~~l-~~i~~r~iSFL~G~AG~lAV~Aviy~~lgd~~~~~~~l~~L~~l~~~~l~~~  158 (352)
                      |+|+++++++.|..+|..|.++|+.|+ ++.+.+++|||||+|||+||+|++++.+|++++.+.|+.+|+++..    ..
T Consensus        74 fl~~kly~vTrd~~~L~~~~e~Vk~~~~~~~s~~~vTFLCG~aGv~avgAvia~~l~~~~~~~~~l~~f~~l~~----~~  149 (403)
T KOG2787|consen   74 FLYLKLYEVTRDLYDLLLCLEIVKACLVASRSSRRVTFLCGRAGVCAVGAVIAHKLGEEEELDDCLARFLSLRL----CS  149 (403)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHhhccccCceEEECCCcchhHHHHHHHHHhccHHHHHHHHHHHHhccc----CC
Confidence            999999999999999999999999998 6677789999999999999999999999999999999999999765    24


Q ss_pred             CCCCCccccchHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHcChhhhhhcCCCCCeeccccccccCCCCCCCCCcch
Q psy2024         159 SDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKKSRVPLINFLMLISCGNNTNQPTKSHL  238 (352)
Q Consensus       159 ~~~pDELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V~~~II~SGr~~ak~~~~~~PLMY~Wh~~~c~~~~~~g~~~~l  238 (352)
                      ++.|||+||||||||||+||||+++|+++|+++.|++||+.|+.|||+++++++++|||||+||+.++-+- -||+++++
T Consensus       150 ~dlp~ElLyGRaGYL~a~lflNk~ig~~ti~~~~i~~i~~~I~~sGr~~a~k~~~~cPLmYewhg~~Y~GA-AhGLagI~  228 (403)
T KOG2787|consen  150 SDLPDELLYGRAGYLWACLFLNKYIGQETIPDDDIRSIVQAILTSGRELAKKENSPCPLMYEWHGKRYWGA-AHGLAGIL  228 (403)
T ss_pred             ccccHHHHhhHHHHHHHHHHHHhhcCCCcCCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhhccceehhh-hhhHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999888 99999999


Q ss_pred             HHHH
Q psy2024         239 YIIL  242 (352)
Q Consensus       239 ~~i~  242 (352)
                      +++|
T Consensus       229 ~vLm  232 (403)
T KOG2787|consen  229 YVLM  232 (403)
T ss_pred             HHHh
Confidence            9999

>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04434 LanC_like LanC-like proteins Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04792 LanM-like LanM-like proteins Back     alignment and domain information
>cd04794 euk_LANCL eukaryotic Lanthionine synthetase C-like protein Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>cd04791 LanC_SerThrkinase Lanthionine synthetase C-like domain associated with serine threonine kinases Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>cd04793 LanC LanC is the cyclase enzyme of the lanthionine synthetase Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>PF05147 LANC_like: Lanthionine synthetase C-like protein; InterPro: IPR007822 The LanC-like protein superfamily encompasses a highly divergent group of peptide-modifying enzymes, including the eukaryotic and bacterial lanthionine synthetase C-like proteins (LanC) [, , ]; subtilin biosynthesis protein SpaC from Bacillus subtilis [, ]; epidermin biosynthesis protein EpiC from Staphylococcus epidermidis []; nisin biosynthesis protein NisC from Lactococcus lactis [, , ]; GCR2 from Arabidopsis thaliana []; and many others Back     alignment and domain information
>COG4403 LcnDR2 Lantibiotic modifying enzyme [Defense mechanisms] Back     alignment and domain information
>KOG2787|consensus Back     alignment and domain information
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
3e6u_A411 Crystal Structure Of Human Lancl1 Length = 411 2e-24
>pdb|3E6U|A Chain A, Crystal Structure Of Human Lancl1 Length = 411 Back     alignment and structure 
Iteration: 1

 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/187 (34%), Positives = 106/187 (56%), Gaps = 11/187 (5%)
Query: 35  LHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKY 94
           L P F  ++   +  L++ ++   +++D     D + Y G +G A+ Y   Y    D  Y
Sbjct: 40  LTPEFSQRLTNKIRELLQQMERGLKSADP---RDGTGYTGWAGIAVLYLHLYDVFGDPAY 96
Query: 95  LDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHV 154
           L  A   +++SL  L  R  +FL GDAGP+AV+A++Y  +  +++ E  + +L     H+
Sbjct: 97  LQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLI----HL 152
Query: 155 VDLRSDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKK-- 212
             +    P+E+LYGR GY+Y+LLFVNK+     I  S I Q+ ++IL SG+NL ARK+  
Sbjct: 153 NKIDPHAPNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENL-ARKRNF 211
Query: 213 -SRVPLI 218
            ++ PL+
Sbjct: 212 TAKSPLM 218

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query352
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 2e-36
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 8e-05
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 1e-04
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 8e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411 Back     alignment and structure
 Score =  134 bits (339), Expect = 2e-36
 Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 10/207 (4%)

Query: 6   SSRHHQNKYKYGEGEKSKLFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFR 65
           + R   N Y       ++ +         L P F  ++   +  L++ ++   +++D   
Sbjct: 14  AQRAFPNPYADYNKSLAEGYFDAAGR---LTPEFSQRLTNKIRELLQQMERGLKSADP-- 68

Query: 66  DHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIA 125
             D + Y G +G A+ Y   Y    D  YL  A   +++SL  L  R  +FL GDAGP+A
Sbjct: 69  -RDGTGYTGWAGIAVLYLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLA 127

Query: 126 VSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDIPDEILYGRAGYLYSLLFVNKHIKS 185
           V+A++Y  +  +++ E  + +L     H+  +    P+E+LYGR GY+Y+LLFVNK+   
Sbjct: 128 VAAVLYHKMNNEKQAEDCITRLI----HLNKIDPHAPNEMLYGRIGYIYALLFVNKNFGV 183

Query: 186 VNIEASLIHQVVDSILRSGQNLSARKK 212
             I  S I Q+ ++IL SG+NL+ ++ 
Sbjct: 184 EKIPQSHIQQICETILTSGENLARKRN 210
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411 Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Length = 411 Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Length = 409 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 100.0
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 99.24
3e6u_A411 LANC-like protein 1; alpha barrel, cytoplasm, sign 98.15
2g0d_A409 Nisin biosynthesis protein NISC; alpha toroid, alp 97.77
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
Probab=100.00  E-value=9.6e-37  Score=303.55  Aligned_cols=228  Identities=29%  Similarity=0.537  Sum_probs=200.2

Q ss_pred             CcCCCCCCCCCCCCCCCCccc-cccccccccccccchHHHHHHHHHHHHHHHhhcccccCCCCCCCCCceeechHHHHHH
Q psy2024           3 TKHSSRHHQNKYKYGEGEKSK-LFTVENKEKIVLHPSFETKVWATLTRLIEDIDSEYETSDKFRDHDYSVYVGTSGQAMF   81 (352)
Q Consensus         3 ~~M~~RyF~Npf~dy~~~~~~-~~~~~~~~~~~l~~~f~~~L~~ai~~lL~~i~~~~~~~d~~~~~dgglYtG~aGIAYm   81 (352)
                      +-|++|||+||||||+++... +++.+|+    ++++|.++|++++++++++++++.+..+   +.+.|+|+|.+||||+
T Consensus        11 ~~~~~r~~~n~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ll~~~~~~~~~~~---~~~~~lY~G~~Gia~~   83 (411)
T 3e6u_A           11 EFMAQRAFPNPYADYNKSLAEGYFDAAGR----LTPEFSQRLTNKIRELLQQMERGLKSAD---PRDGTGYTGWAGIAVL   83 (411)
T ss_dssp             SCGGGGBCCCCSCCCCHHHHHTTBCTTCC----BCHHHHHHHHHHHHHHHHHHHHHTTTSC---TTCCCSSSSHHHHHHH
T ss_pred             ccccCccCCCCCCcccccccccccccccc----ccHHHHHHHHHHHHHHHHHHHhhcccCC---CCCCCeeeChHHHHHH
Confidence            468899999999999875443 4677788    9999999999999999999998876644   6789999999999999


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHHHhhccCCCccccCCChHHHHHHHHHHHHhCChHHHHHHHHHHHhhchhccCCCCCC
Q psy2024          82 YYIYYQRTHDSKYLDKAQKLIERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLRSDI  161 (352)
Q Consensus        82 flrL~~~~~d~~yL~~A~e~I~~~l~~i~~r~iSFL~G~AG~lAV~Aviy~~lgd~~~~~~~l~~L~~l~~~~l~~~~~~  161 (352)
                      |+++++.++|+.|+++|.++++.+.+.++.++++|++|.+|++++++++|+.+|+++.++++++++.+...    .+...
T Consensus        84 l~~l~~~t~d~~yl~~a~~~l~~~~~~l~~~~~~~~~G~aG~l~~l~~ly~~~g~~~~a~~~~~~l~~~~~----~~~~~  159 (411)
T 3e6u_A           84 YLHLYDVFGDPAYLQLAHGYVKQSLNCLTKRSITFLCGDAGPLAVAAVLYHKMNNEKQAEDCITRLIHLNK----IDPHA  159 (411)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHTTCCSCCCCTTTSTHHHHHHHHHHHHHTTCHHHHHHHHHHHHGGGG----GCTTC
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcccCCccccCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc----ccccC
Confidence            99999999999999999999999888887778999999999999999999999998888889999888762    23456


Q ss_pred             CCccccchHHHHHHHHHHHhhcCCCCChhhhHHHHHHHHHHcChhhhhhcC--CCCCeeccccccccCCCCCCCCCcchH
Q psy2024         162 PDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKK--SRVPLINFLMLISCGNNTNQPTKSHLY  239 (352)
Q Consensus       162 pDELLYGRAGYLyALL~Lrk~~~~e~i~~~~I~~V~~~II~SGr~~ak~~~--~~~PLMY~Wh~~~c~~~~~~g~~~~l~  239 (352)
                      ++|++||||||+++|++++++++++.+++..|.++++.|+++|+.++++.+  ..+||||+||...+ .+.-||..+++.
T Consensus       160 ~~dll~G~AG~l~aLl~L~~~~~~~~~~~~~i~~i~~~ii~~g~~~~~~~~~~~~~pl~~~w~~~~~-~G~aHG~aGI~~  238 (411)
T 3e6u_A          160 PNEMLYGRIGYIYALLFVNKNFGVEKIPQSHIQQICETILTSGENLARKRNFTAKSPLMYEWYQEYY-VGAAHGLAGIYY  238 (411)
T ss_dssp             CSSTTTSHHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHHHHHTTTTTTCSCCCCBTTBCB-CSTTTSHHHHHH
T ss_pred             ChhhhcCcHHHHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHHHhccccCCCCcceeecCccC-CcccccHHHHHH
Confidence            899999999999999999999999999888999999999999999987654  57999999997655 456888877776


Q ss_pred             HHH
Q psy2024         240 IIL  242 (352)
Q Consensus       240 ~i~  242 (352)
                      .++
T Consensus       239 ~Ll  241 (411)
T 3e6u_A          239 YLM  241 (411)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            554
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure
>3e6u_A LANC-like protein 1; alpha barrel, cytoplasm, signaling protein; 2.60A {Homo sapiens} PDB: 3e73_A* Back     alignment and structure
>2g0d_A Nisin biosynthesis protein NISC; alpha toroid, alpha barrel, biosynthetic protein; 2.21A {Lactococcus lactis subsp} SCOP: a.102.6.1 PDB: 2g02_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 352
d2g0da1409 a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis 4e-21
d2g0da1409 a.102.6.1 (A:7-415) Nisin biosynthesis protein Nis 0.001
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409 Back     information, alignment and structure

class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

 Score = 91.1 bits (225), Expect = 4e-21
 Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 15/199 (7%)

Query: 47  LTRLIEDIDSEYET-----SDKFRDHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKL 101
           + R +E I ++++       + F   + ++  G  G  +       + +   Y  K    
Sbjct: 4   IKRNVEKIIAQWDERTRKNKENFDFGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNY 63

Query: 102 IERSLKNLKNRRFSFLNGDAGPIAVSALIYEALGKQEKLESSVQKLKALAPHVVDLR--- 158
           IE  +  L        +  +G   ++  I       EK ++ +  L     + V  +   
Sbjct: 64  IEYIVSKLSTYGLLTGSLYSGAAGIALSILHLREDDEKYKNLLDSLNRYIEYFVREKIEG 123

Query: 159 ------SDIPDEILYGRAGYLYSLLFVNKHIKSVNIEASLIHQVVDSILRSGQNLSARKK 212
                 +    +++ G +G L  LL +N      +++  +I+ + +    +   +S   K
Sbjct: 124 FNLENITPPDYDVIEGLSGILSYLLLINDEQYD-DLKILIINFLSNLTKENNGLISLYIK 182

Query: 213 SRVPLINFLMLISCGNNTN 231
           S   +      +      N
Sbjct: 183 SENQMSQSESEMYPLGCLN 201
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Length = 409 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query352
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 98.97
d2g0da1409 Nisin biosynthesis protein NisC {Lactococcus lacti 97.64
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha/alpha toroid
superfamily: LanC-like
family: LanC-like
domain: Nisin biosynthesis protein NisC
species: Lactococcus lactis [TaxId: 1358]

Probab=98.97  E-value=1e-10  Score=112.16  Aligned_cols=118  Identities=19%  Similarity=0.227  Sum_probs=77.5

Q ss_pred             CCCCceeechHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhhccC---CCccccCCChHHHHHHHHHHHHhCC-hHHHH
Q psy2024          66 DHDYSVYVGTSGQAMFYYIYYQRTHDSKYLDKAQKLIERSLKNLKN---RRFSFLNGDAGPIAVSALIYEALGK-QEKLE  141 (352)
Q Consensus        66 ~~dgglYtG~aGIAYmflrL~~~~~d~~yL~~A~e~I~~~l~~i~~---r~iSFL~G~AG~lAV~Aviy~~lgd-~~~~~  141 (352)
                      ..+-|+|+|.+|||++|..|++.++|+.|.+.|.++++.+.+.++.   ...++..|.+|+..+...+++..++ +..++
T Consensus        28 ~~~~sLy~G~~GiaL~l~~l~~~t~~~~~~~~a~~~l~~~~~~~~~~~~~~~glf~G~~Gi~~~l~~~~~~~~~~~~~~~  107 (409)
T d2g0da1          28 FGELTLSTGLPGIILMLAELKNKDNSKIYQKKIDNYIEYIVSKLSTYGLLTGSLYSGAAGIALSILHLREDDEKYKNLLD  107 (409)
T ss_dssp             GGGGSTTTSHHHHHHHHHTTTTSTTHHHHHHHHHHHHHHHHHHHHHHCCSCCCTTTSHHHHHHHHGGGTTTCHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCCCcceeCCHHHHHHHHHHHHhcchhhhHHHH
Confidence            3456999999999999999999999999999999999988776642   3577888988875544333321111 11112


Q ss_pred             HHHHHHHhhchhccC---CC--CCCCCccccchHHHHHHHHHHHhhc
Q psy2024         142 SSVQKLKALAPHVVD---LR--SDIPDEILYGRAGYLYSLLFVNKHI  183 (352)
Q Consensus       142 ~~l~~L~~l~~~~l~---~~--~~~pDELLYGRAGYLyALL~Lrk~~  183 (352)
                      +..+.+.+.+...+.   ..  .....++++|+||++.+|+.+++..
T Consensus       108 ~l~~~l~~~~~~~i~~~~~~~~~~~~~D~l~G~aG~~~~LL~~~~~~  154 (409)
T d2g0da1         108 SLNRYIEYFVREKIEGFNLENITPPDYDVIEGLSGILSYLLLINDEQ  154 (409)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGCCHHHHSSSSSHHHHHHHHTTCCCGG
T ss_pred             HHHHHHHHHHHHHHHHhhccccCCcccchhcccHHHHHHHHHhcccc
Confidence            222333332222111   11  1123479999999999999776654
>d2g0da1 a.102.6.1 (A:7-415) Nisin biosynthesis protein NisC {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure