Psyllid ID: psy2113
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 183 | 2.2.26 [Sep-21-2011] | |||||||
| B0W517 | 425 | Ribosome biogenesis prote | N/A | N/A | 0.715 | 0.308 | 0.467 | 2e-40 | |
| Q17BB0 | 427 | Ribosome biogenesis prote | N/A | N/A | 0.715 | 0.306 | 0.461 | 8e-40 | |
| Q7QJ33 | 428 | Ribosome biogenesis prote | yes | N/A | 0.715 | 0.306 | 0.426 | 1e-37 | |
| Q29KQ0 | 419 | Ribosome biogenesis prote | yes | N/A | 0.715 | 0.312 | 0.437 | 7e-37 | |
| B4MU54 | 423 | Ribosome biogenesis prote | N/A | N/A | 0.715 | 0.309 | 0.431 | 1e-36 | |
| B4GT01 | 419 | Ribosome biogenesis prote | N/A | N/A | 0.715 | 0.312 | 0.431 | 1e-36 | |
| B4KKN1 | 419 | Ribosome biogenesis prote | N/A | N/A | 0.710 | 0.310 | 0.434 | 3e-36 | |
| B3MJV8 | 419 | Ribosome biogenesis prote | N/A | N/A | 0.715 | 0.312 | 0.426 | 3e-36 | |
| B3N534 | 420 | Ribosome biogenesis prote | N/A | N/A | 0.715 | 0.311 | 0.426 | 3e-36 | |
| B4Q9T6 | 420 | Ribosome biogenesis prote | N/A | N/A | 0.715 | 0.311 | 0.431 | 4e-36 |
| >sp|B0W517|WDR12_CULQU Ribosome biogenesis protein WDR12 homolog OS=Culex quinquefasciatus GN=CPIJ001500 PE=3 SV=2 | Back alignment and function desciption |
|---|
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 105/169 (62%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TPL+TL GH+E IS VQW + ++TSSWDHT+KIWD L G+K
Sbjct: 250 RTPLMTLAGHRECISGVQWIDDNTLVTSSWDHTIKIWDLALNGIKSEISGNKSFFDLSYS 309
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G +VK+T+ H +WVQSVRWS + LFVS ++DN
Sbjct: 310 KLNGLIITASPDKNLRLYDPKSNQGTLVKNTYLGHTQWVQSVRWSTTNEYLFVSGAYDNH 369
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
VKLWD RSPK P+F+++GHEDKV+ +WS+ R+I+SGG DNSVRVFK+K
Sbjct: 370 VKLWDYRSPKAPIFELIGHEDKVLACDWSNPRFILSGGSDNSVRVFKSK 418
|
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. Culex quinquefasciatus (taxid: 7176) |
| >sp|Q17BB0|WDR12_AEDAE Ribosome biogenesis protein WDR12 homolog OS=Aedes aegypti GN=AAEL005041 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 162 bits (411), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TP++TL GH+E IS VQW + ++TSSWDHT+KIWD L G+K
Sbjct: 252 RTPVLTLAGHRECISGVQWIDDNTLVTSSWDHTIKIWDLALSGIKSEICGHKSFFDLSYS 311
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G IVK+T+ H +WVQSVRWS + LFVS ++DN
Sbjct: 312 HLNGLIIAASPDKNLRLYDPKSNQGTIVKNTYLGHTQWVQSVRWSTTNEYLFVSGAYDNH 371
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
VKLWD RSPK P+F+++GHEDKV+ +WS+ ++I+SGG DNSVRVFK+K
Sbjct: 372 VKLWDYRSPKAPIFELIGHEDKVLACDWSNPKFILSGGSDNSVRVFKSK 420
|
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. Aedes aegypti (taxid: 7159) |
| >sp|Q7QJ33|WDR12_ANOGA Ribosome biogenesis protein WDR12 homolog OS=Anopheles gambiae GN=AGAP007244 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 155 bits (393), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 100/169 (59%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TP++TL GH+E +S VQW I T SWDHT+K+WD +GG+K
Sbjct: 251 RTPVVTLAGHREFVSGVQWIDNTTIATCSWDHTIKLWDLSMGGIKTEFTGNKSFFDLSYS 310
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
G VK+T+ H +WVQ+ RWS + LFVS ++DN
Sbjct: 311 PLNGMIITASPDKNLRLYDPRSKHGNFVKNTYLGHSQWVQTCRWSTTNEYLFVSGAYDNR 370
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
VKLWD RSPK P+F+++GHEDKV+ +WS+ +YI+SGG DN+VRVFK++
Sbjct: 371 VKLWDYRSPKAPIFELIGHEDKVLACDWSNPKYILSGGSDNAVRVFKSR 419
|
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. Anopheles gambiae (taxid: 7165) |
| >sp|Q29KQ0|WDR12_DROPS Ribosome biogenesis protein WDR12 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA19813 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 153 bits (386), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 74/169 (43%), Positives = 103/169 (60%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TP ITL+GH+E+ISAVQW ++T SWDHTLK+WD L G+K
Sbjct: 241 RTPKITLQGHRESISAVQWMDASTLLTGSWDHTLKVWDLSLEGIKAEISTNKSIFDASYS 300
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G++V++T+ H WVQ+V WS + LFVS S+DN
Sbjct: 301 KLNHLILTASADKNLRLYDSRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGSYDNQ 360
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
KLWD RSPK PL+D+LGH +KV+ ++WS+ +YI+SGG DN+VRVFK++
Sbjct: 361 NKLWDCRSPKAPLYDLLGHGEKVLDIDWSNPKYIVSGGSDNTVRVFKSR 409
|
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|B4MU54|WDR12_DROWI Ribosome biogenesis protein WDR12 homolog OS=Drosophila willistoni GN=GK23981 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 104/169 (61%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TP++TL+GH+E+ISAVQW ++T+SWDHT+KIWD L G+K
Sbjct: 245 RTPIMTLQGHRESISAVQWIDTSTLLTTSWDHTMKIWDLSLEGIKTEISTNKSIFDASYS 304
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G+IV++T+ H WVQ+V WS + LFVS ++DN
Sbjct: 305 NLNRLIVTASADKNLRLYDPRTNQGSIVRNTYLGHNAWVQTVMWSTTEEFLFVSGAYDNQ 364
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
KLWD RSPK PL+D+LGH +KV+ ++WS+ +YI SGG DN+VRVFK++
Sbjct: 365 NKLWDCRSPKAPLYDLLGHGEKVLDIDWSNPKYICSGGADNTVRVFKSR 413
|
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. Drosophila willistoni (taxid: 7260) |
| >sp|B4GT01|WDR12_DROPE Ribosome biogenesis protein WDR12 homolog OS=Drosophila persimilis GN=GL26386 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (384), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 103/169 (60%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TP ITL+GH+E+ISAVQW ++T SWDHTLK+WD L G+K
Sbjct: 241 RTPKITLQGHRESISAVQWMDASTLLTGSWDHTLKVWDLSLEGIKAEISTNKSIFDASYS 300
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G++V++T+ H WVQ+V WS + LFVS S+DN
Sbjct: 301 KLNHLILTASADKNLRLYDSRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGSYDNQ 360
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
KLWD RSPK PL+D+LGH +KV+ ++W++ +YI+SGG DN+VRVFK++
Sbjct: 361 NKLWDCRSPKAPLYDLLGHGEKVLDIDWTNPKYIVSGGSDNTVRVFKSR 409
|
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. Drosophila persimilis (taxid: 7234) |
| >sp|B4KKN1|WDR12_DROMO Ribosome biogenesis protein WDR12 homolog OS=Drosophila mojavensis GN=GI17814 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 151 bits (381), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 103/168 (61%), Gaps = 38/168 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TP +TL+GH+E+ISAVQW + ++T SWDHTLK+WD L G+K
Sbjct: 241 RTPRMTLQGHRESISAVQWMDNNTLLTGSWDHTLKVWDLNLEGIKTEISTNKSIFDASHS 300
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G++V+ST+ H WVQ+V WS + LFVS ++DN
Sbjct: 301 KLNNLIVTASADKNLRLYDARTNQGSVVRSTYLGHNAWVQTVMWSITEEFLFVSGAYDNQ 360
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKT 171
KLWD RSPK PL+D+LGH +KV+ ++WS+ +YI+SGG DN+VRVFK+
Sbjct: 361 NKLWDCRSPKAPLYDLLGHGEKVLDIDWSNPKYIVSGGADNTVRVFKS 408
|
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. Drosophila mojavensis (taxid: 7230) |
| >sp|B3MJV8|WDR12_DROAN Ribosome biogenesis protein WDR12 homolog OS=Drosophila ananassae GN=GF14067 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 103/169 (60%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TP +TL+GH+E+ISAVQW ++T SWDHTLK+WD L G+K
Sbjct: 241 RTPKMTLQGHRESISAVQWMDASTLLTGSWDHTLKVWDLSLEGIKTEISTNKSIFDASYS 300
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G++V++T+ H WVQ+V WS + LFVS ++DN
Sbjct: 301 NLNRLIVTASADKNLRLYDARTNQGSVVRNTYLGHNAWVQAVMWSTTEEFLFVSGAYDNQ 360
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
KLWD RSPK PL+D+LGH +KV+ ++W++ +YI+SGG DNSVRVFK++
Sbjct: 361 NKLWDCRSPKAPLYDLLGHGEKVLDIDWTNPKYIVSGGADNSVRVFKSR 409
|
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. Drosophila ananassae (taxid: 7217) |
| >sp|B3N534|WDR12_DROER Ribosome biogenesis protein WDR12 homolog OS=Drosophila erecta GN=GG10358 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 103/169 (60%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TP ITL+GH+E++SAVQW ++T SWDHTLK+WD L G+K
Sbjct: 242 RTPKITLQGHRESVSAVQWMDASTLLTGSWDHTLKVWDLSLEGIKTEISTNKSIFDASYS 301
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G++V++T+ H WVQ+V WS + LFVS ++DN
Sbjct: 302 KLNRLILTASADKNLRLYDPRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGAYDNQ 361
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
KLWD RSPK PL+D+LGH +KV+ ++WS+ +YI+SGG DN+VRVFK++
Sbjct: 362 NKLWDCRSPKAPLYDLLGHGEKVLDIDWSNPKYIVSGGVDNTVRVFKSR 410
|
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. Drosophila erecta (taxid: 7220) |
| >sp|B4Q9T6|WDR12_DROSI Ribosome biogenesis protein WDR12 homolog OS=Drosophila simulans GN=GD22226 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 103/169 (60%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TP ITL+GH+E++SAVQW ++T SWD+TLK+WD L G+K
Sbjct: 242 RTPKITLQGHRESVSAVQWMDATTLLTGSWDYTLKVWDLSLEGIKTEISTNKSIFDASYS 301
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G++V++T+ H WVQ+V WS + LFVS ++DN
Sbjct: 302 KLNRLILTASADKNLRLYDPRTNQGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGAYDNQ 361
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
KLWD RSPK PL+D+LGH DKV+ ++WS+ +YI+SGG DNSVRVFK++
Sbjct: 362 NKLWDCRSPKAPLYDLLGHGDKVLDIDWSNPKYIVSGGVDNSVRVFKSR 410
|
Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit. Drosophila simulans (taxid: 7240) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 183 | ||||||
| 340712088 | 423 | PREDICTED: ribosome biogenesis protein W | 0.721 | 0.312 | 0.5 | 1e-43 | |
| 380030452 | 423 | PREDICTED: ribosome biogenesis protein W | 0.721 | 0.312 | 0.5 | 5e-43 | |
| 383861212 | 423 | PREDICTED: ribosome biogenesis protein W | 0.715 | 0.309 | 0.485 | 2e-42 | |
| 328783893 | 423 | PREDICTED: ribosome biogenesis protein W | 0.721 | 0.312 | 0.482 | 3e-42 | |
| 345493565 | 422 | PREDICTED: ribosome biogenesis protein W | 0.737 | 0.319 | 0.491 | 7e-42 | |
| 332025573 | 443 | Ribosome biogenesis protein WDR12-like p | 0.721 | 0.297 | 0.476 | 5e-39 | |
| 226698191 | 425 | RecName: Full=Ribosome biogenesis protei | 0.715 | 0.308 | 0.467 | 9e-39 | |
| 170031859 | 405 | WD repeat protein 12 [Culex quinquefasci | 0.715 | 0.323 | 0.467 | 1e-38 | |
| 322800369 | 433 | hypothetical protein SINV_04859 [Solenop | 0.710 | 0.300 | 0.470 | 1e-38 | |
| 157108390 | 427 | wd-repeat protein [Aedes aegypti] gi|122 | 0.715 | 0.306 | 0.461 | 4e-38 |
| >gi|340712088|ref|XP_003394596.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 181 bits (458), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 111/170 (65%), Gaps = 38/170 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+ P T+KGHKEAIS V W+ EIITSSWDHT+KIWD+ELGG+K
Sbjct: 251 RVPKRTMKGHKEAISGVVWSDKTEIITSSWDHTIKIWDSELGGIKHELAGNKSFFDLDYS 310
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G +VK+ F+SH +WVQSVRWSP+D LF+S ++DN
Sbjct: 311 PLTRTVITASADRHIRLYDPRSTEGTLVKAIFTSHTQWVQSVRWSPVDETLFISGAYDNE 370
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173
+KLWD RSPK PLFD+ GHEDKV+C NWS+ ++++SGG DN+VR+FK+KH
Sbjct: 371 MKLWDTRSPKAPLFDLSGHEDKVLCCNWSNPKFMVSGGADNTVRIFKSKH 420
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380030452|ref|XP_003698862.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 112/170 (65%), Gaps = 38/170 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+ P T+KGHKEAIS V W+ EIITSSWDHT+KIWD+ELGG+K
Sbjct: 251 RIPKRTMKGHKEAISGVVWSDKIEIITSSWDHTIKIWDSELGGIKHELTGNKSFFDLDFS 310
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G++VK+ F+SH +WVQSVRWSPI LF+S ++DN
Sbjct: 311 PLSHTIITASADRHIRLYDPRSTEGSLVKAIFTSHTQWVQSVRWSPIHENLFISGAYDND 370
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173
+KLWD+RSPK PLFD+ GHEDKV+C NWS+ ++++SGG DN+VR+FK+KH
Sbjct: 371 MKLWDIRSPKAPLFDLSGHEDKVLCCNWSNPKFMVSGGADNTVRIFKSKH 420
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383861212|ref|XP_003706080.1| PREDICTED: ribosome biogenesis protein WDR12 homolog [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 177 bits (448), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/169 (48%), Positives = 111/169 (65%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+ P T+KGHKEAIS+V W+ E+IT+SWDHT+K+WD+ELGG+K
Sbjct: 251 RVPKRTMKGHKEAISSVVWSDKTELITASWDHTIKLWDSELGGIKHELAGNKSFFDLDYS 310
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G +VKS F+SH +WVQSVRWSP+D LF+S ++DN
Sbjct: 311 LLSRAIIAASADRHIRLYDPRSTEGTLVKSVFTSHTQWVQSVRWSPVDENLFISGAYDND 370
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
+KLWD RSPK PLFD+ GHEDKV+C NWS+ ++++SGG DN+VR+FK+K
Sbjct: 371 MKLWDTRSPKAPLFDLSGHEDKVLCCNWSNPKFMVSGGADNTVRIFKSK 419
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328783893|ref|XP_396848.3| PREDICTED: ribosome biogenesis protein WDR12 homolog [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 176 bits (447), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 111/170 (65%), Gaps = 38/170 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+ P T+KGHKEAIS V W+ EIITSSWDHT+KIWD+ELGG+K
Sbjct: 251 RIPKRTMKGHKEAISGVVWSDKIEIITSSWDHTIKIWDSELGGIKHELTGNKSFFDLDYS 310
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G++VK+ F+SH +WVQS+RWSP+ LF+S ++DN
Sbjct: 311 PLSHTIITASADRHIRLYDPRSTEGSLVKAIFTSHTQWVQSIRWSPVHENLFISGAYDND 370
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173
+KLWD RSPK PLFD+ GHEDK++C NWS+ ++++SGG DN+VR+FK+KH
Sbjct: 371 MKLWDTRSPKAPLFDLSGHEDKILCCNWSNPKFMVSGGADNTVRIFKSKH 420
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345493565|ref|XP_001602606.2| PREDICTED: ribosome biogenesis protein WDR12 homolog [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 175 bits (444), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/173 (49%), Positives = 109/173 (63%), Gaps = 38/173 (21%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+ PL T+KGHKEA+S V WT EI+TSSWDHTLK+WD ELGG+K
Sbjct: 250 RVPLRTMKGHKEAVSGVVWTDKTEIVTSSWDHTLKVWDTELGGIKHELAGNKSFFDVDYS 309
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+GA+ KS F+SH +WVQSVRWS LF+S ++DN+
Sbjct: 310 PLSKVLIAASADKHVRLYDPRSTEGAVCKSMFTSHTQWVQSVRWSTTQDHLFMSGAYDNN 369
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176
VKLWD RSPK PLFD+ GHEDKV+ NWS+ +Y++SGG DN+VR+FK+K+ K
Sbjct: 370 VKLWDTRSPKAPLFDLTGHEDKVLSCNWSNPKYLVSGGADNTVRIFKSKYAVK 422
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332025573|gb|EGI65736.1| Ribosome biogenesis protein WDR12-like protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 166 bits (419), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 81/170 (47%), Positives = 103/170 (60%), Gaps = 38/170 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKK-------------- 87
KTP +KGHK+AIS + W+ EIIT SWDHT+K WD EL G+K+
Sbjct: 271 KTPKCAMKGHKQAISGIVWSDKTEIITGSWDHTIKTWDTELNGIKQEIYGDKCFFDIDYS 330
Query: 88 ------------------------GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
G IVK+ F+SH +WV SVRWS ID LF+S ++DN
Sbjct: 331 PLSRVVIAGSADQHVRLYDPRSTEGTIVKARFTSHTQWVTSVRWSTIDEHLFISGAYDNI 390
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173
VKLWD RSPK PLFD+LGHEDKV+ +WS+ + IMSGG DN++R+FK+ H
Sbjct: 391 VKLWDTRSPKAPLFDLLGHEDKVLSCDWSNPKLIMSGGADNTLRIFKSNH 440
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|226698191|sp|B0W517.2|WDR12_CULQU RecName: Full=Ribosome biogenesis protein WDR12 homolog | Back alignment and taxonomy information |
|---|
Score = 165 bits (417), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 105/169 (62%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TPL+TL GH+E IS VQW + ++TSSWDHT+KIWD L G+K
Sbjct: 250 RTPLMTLAGHRECISGVQWIDDNTLVTSSWDHTIKIWDLALNGIKSEISGNKSFFDLSYS 309
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G +VK+T+ H +WVQSVRWS + LFVS ++DN
Sbjct: 310 KLNGLIITASPDKNLRLYDPKSNQGTLVKNTYLGHTQWVQSVRWSTTNEYLFVSGAYDNH 369
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
VKLWD RSPK P+F+++GHEDKV+ +WS+ R+I+SGG DNSVRVFK+K
Sbjct: 370 VKLWDYRSPKAPIFELIGHEDKVLACDWSNPRFILSGGSDNSVRVFKSK 418
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170031859|ref|XP_001843801.1| WD repeat protein 12 [Culex quinquefasciatus] gi|167871200|gb|EDS34583.1| WD repeat protein 12 [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/169 (46%), Positives = 105/169 (62%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TPL+TL GH+E IS VQW + ++TSSWDHT+KIWD L G+K
Sbjct: 230 RTPLMTLAGHRECISGVQWIDDNTLVTSSWDHTIKIWDLALNGIKSEISGNKSFFDLSYS 289
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G +VK+T+ H +WVQSVRWS + LFVS ++DN
Sbjct: 290 KLNGLIITASPDKNLRLYDPKSNQGTLVKNTYLGHTQWVQSVRWSTTNEYLFVSGAYDNH 349
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
VKLWD RSPK P+F+++GHEDKV+ +WS+ R+I+SGG DNSVRVFK+K
Sbjct: 350 VKLWDYRSPKAPIFELIGHEDKVLACDWSNPRFILSGGSDNSVRVFKSK 398
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322800369|gb|EFZ21373.1| hypothetical protein SINV_04859 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 164 bits (415), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 79/168 (47%), Positives = 104/168 (61%), Gaps = 38/168 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKK-------------- 87
KTP +KGHK+AIS + W+ E+IT SWDHT+K WD EL G+K+
Sbjct: 266 KTPKSAMKGHKQAISGIVWSDKTEVITGSWDHTIKTWDTELNGIKQEIHGDKCFFDIDYS 325
Query: 88 ------------------------GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
GAIVK+ F+SHK+WV SVRWS ++ LF+S ++DN
Sbjct: 326 PLSRVVIAGSADQHVRLYDPRSTEGAIVKARFTSHKQWVVSVRWSTVNEYLFISGAYDNI 385
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKT 171
VK WD RSPK PLFD+LGHEDKV+C +WS+ + IMSGG DN++R+FK+
Sbjct: 386 VKFWDTRSPKAPLFDLLGHEDKVLCCDWSNPKLIMSGGADNTLRIFKS 433
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157108390|ref|XP_001650205.1| wd-repeat protein [Aedes aegypti] gi|122106389|sp|Q17BB0.1|WDR12_AEDAE RecName: Full=Ribosome biogenesis protein WDR12 homolog gi|108879311|gb|EAT43536.1| AAEL005041-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 162 bits (411), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 78/169 (46%), Positives = 105/169 (62%), Gaps = 38/169 (22%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK--------------- 86
+TP++TL GH+E IS VQW + ++TSSWDHT+KIWD L G+K
Sbjct: 252 RTPVLTLAGHRECISGVQWIDDNTLVTSSWDHTIKIWDLALSGIKSEICGHKSFFDLSYS 311
Query: 87 -----------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123
+G IVK+T+ H +WVQSVRWS + LFVS ++DN
Sbjct: 312 HLNGLIIAASPDKNLRLYDPKSNQGTIVKNTYLGHTQWVQSVRWSTTNEYLFVSGAYDNH 371
Query: 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
VKLWD RSPK P+F+++GHEDKV+ +WS+ ++I+SGG DNSVRVFK+K
Sbjct: 372 VKLWDYRSPKAPIFELIGHEDKVLACDWSNPKFILSGGSDNSVRVFKSK 420
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 183 | ||||||
| UNIPROTKB|B0W517 | 425 | CPIJ001500 "Ribosome biogenesi | 0.568 | 0.244 | 0.551 | 1e-29 | |
| UNIPROTKB|Q17BB0 | 427 | AAEL005041 "Ribosome biogenesi | 0.650 | 0.278 | 0.491 | 3.4e-29 | |
| UNIPROTKB|Q7QJ33 | 428 | AGAP007244 "Ribosome biogenesi | 0.568 | 0.242 | 0.523 | 3.1e-28 | |
| UNIPROTKB|B4KKN1 | 419 | GI17814 "Ribosome biogenesis p | 0.622 | 0.272 | 0.470 | 5.7e-27 | |
| UNIPROTKB|B3MJV8 | 419 | GF14067 "Ribosome biogenesis p | 0.568 | 0.248 | 0.495 | 7.3e-27 | |
| UNIPROTKB|Q29KQ0 | 419 | GA19813 "Ribosome biogenesis p | 0.568 | 0.248 | 0.495 | 7.3e-27 | |
| UNIPROTKB|B4Q9T6 | 420 | GD22226 "Ribosome biogenesis p | 0.568 | 0.247 | 0.504 | 7.3e-27 | |
| UNIPROTKB|B4JPT9 | 419 | GH13339 "Ribosome biogenesis p | 0.568 | 0.248 | 0.495 | 1.2e-26 | |
| UNIPROTKB|B4GT01 | 419 | GL26386 "Ribosome biogenesis p | 0.568 | 0.248 | 0.485 | 1.5e-26 | |
| UNIPROTKB|B4HWV6 | 420 | GM11446 "Ribosome biogenesis p | 0.568 | 0.247 | 0.495 | 1.5e-26 |
| UNIPROTKB|B0W517 CPIJ001500 "Ribosome biogenesis protein WDR12 homolog" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 59/107 (55%), Positives = 82/107 (76%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
IIT+S D L+++D + +G +VK+T+ H +WVQSVRWS + LFVS ++DN VK
Sbjct: 315 IITASPDKNLRLYDPK---SNQGTLVKNTYLGHTQWVQSVRWSTTNEYLFVSGAYDNHVK 371
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
LWD RSPK P+F+++GHEDKV+ +WS+ R+I+SGG DNSVRVFK+K
Sbjct: 372 LWDYRSPKAPIFELIGHEDKVLACDWSNPRFILSGGSDNSVRVFKSK 418
|
|
| UNIPROTKB|Q17BB0 AAEL005041 "Ribosome biogenesis protein WDR12 homolog" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 61/124 (49%), Positives = 89/124 (71%)
Query: 50 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWS 108
GHK + ++ ++ II +S D L+++D + +G IVK+T+ H +WVQSVRWS
Sbjct: 301 GHKSFFD-LSYSHLNGLIIAASPDKNLRLYDPK---SNQGTIVKNTYLGHTQWVQSVRWS 356
Query: 109 PIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRV 168
+ LFVS ++DN VKLWD RSPK P+F+++GHEDKV+ +WS+ ++I+SGG DNSVRV
Sbjct: 357 TTNEYLFVSGAYDNHVKLWDYRSPKAPIFELIGHEDKVLACDWSNPKFILSGGSDNSVRV 416
Query: 169 FKTK 172
FK+K
Sbjct: 417 FKSK 420
|
|
| UNIPROTKB|Q7QJ33 AGAP007244 "Ribosome biogenesis protein WDR12 homolog" [Anopheles gambiae (taxid:7165)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 56/107 (52%), Positives = 79/107 (73%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
IIT+S D L+++D K G VK+T+ H +WVQ+ RWS + LFVS ++DN VK
Sbjct: 316 IITASPDKNLRLYDPR---SKHGNFVKNTYLGHSQWVQTCRWSTTNEYLFVSGAYDNRVK 372
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
LWD RSPK P+F+++GHEDKV+ +WS+ +YI+SGG DN+VRVFK++
Sbjct: 373 LWDYRSPKAPIFELIGHEDKVLACDWSNPKYILSGGSDNAVRVFKSR 419
|
|
| UNIPROTKB|B4KKN1 GI17814 "Ribosome biogenesis protein WDR12 homolog" [Drosophila mojavensis (taxid:7230)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 55/117 (47%), Positives = 82/117 (70%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
I+T+S D L+++DA +G++V+ST+ H WVQ+V WS + LFVS ++DN K
Sbjct: 306 IVTASADKNLRLYDARTN---QGSVVRSTYLGHNAWVQTVMWSITEEFLFVSGAYDNQNK 362
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKSGQKSK 182
LWD RSPK PL+D+LGH +KV+ ++WS+ +YI+SGG DN+VRVFK+ ++K
Sbjct: 363 LWDCRSPKAPLYDLLGHGEKVLDIDWSNPKYIVSGGADNTVRVFKSSKATVENMETK 419
|
|
| UNIPROTKB|B3MJV8 GF14067 "Ribosome biogenesis protein WDR12 homolog" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 53/107 (49%), Positives = 80/107 (74%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
I+T+S D L+++DA +G++V++T+ H WVQ+V WS + LFVS ++DN K
Sbjct: 306 IVTASADKNLRLYDARTN---QGSVVRNTYLGHNAWVQAVMWSTTEEFLFVSGAYDNQNK 362
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
LWD RSPK PL+D+LGH +KV+ ++W++ +YI+SGG DNSVRVFK++
Sbjct: 363 LWDCRSPKAPLYDLLGHGEKVLDIDWTNPKYIVSGGADNSVRVFKSR 409
|
|
| UNIPROTKB|Q29KQ0 GA19813 "Ribosome biogenesis protein WDR12 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 53/107 (49%), Positives = 80/107 (74%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
I+T+S D L+++D+ +G++V++T+ H WVQ+V WS + LFVS S+DN K
Sbjct: 306 ILTASADKNLRLYDSRTN---QGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGSYDNQNK 362
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
LWD RSPK PL+D+LGH +KV+ ++WS+ +YI+SGG DN+VRVFK++
Sbjct: 363 LWDCRSPKAPLYDLLGHGEKVLDIDWSNPKYIVSGGSDNTVRVFKSR 409
|
|
| UNIPROTKB|B4Q9T6 GD22226 "Ribosome biogenesis protein WDR12 homolog" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 54/107 (50%), Positives = 79/107 (73%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
I+T+S D L+++D +G++V++T+ H WVQ+V WS + LFVS ++DN K
Sbjct: 307 ILTASADKNLRLYDPRTN---QGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGAYDNQNK 363
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
LWD RSPK PL+D+LGH DKV+ ++WS+ +YI+SGG DNSVRVFK++
Sbjct: 364 LWDCRSPKAPLYDLLGHGDKVLDIDWSNPKYIVSGGVDNSVRVFKSR 410
|
|
| UNIPROTKB|B4JPT9 GH13339 "Ribosome biogenesis protein WDR12 homolog" [Drosophila grimshawi (taxid:7222)] | Back alignment and assigned GO terms |
|---|
Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
Identities = 53/107 (49%), Positives = 79/107 (73%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
I+T+S D L+++D +G++V++T+ H WVQ+V WS + LFVS S+DN K
Sbjct: 306 IVTASADKNLRLYDPRTN---QGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGSYDNQNK 362
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
LWD RSPK PL+D+LGH +KV+ ++WS+ +YI+SGG DN+VRVFK++
Sbjct: 363 LWDCRSPKAPLYDLLGHGEKVLDIDWSNPKYIVSGGADNTVRVFKSR 409
|
|
| UNIPROTKB|B4GT01 GL26386 "Ribosome biogenesis protein WDR12 homolog" [Drosophila persimilis (taxid:7234)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 52/107 (48%), Positives = 80/107 (74%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
I+T+S D L+++D+ +G++V++T+ H WVQ+V WS + LFVS S+DN K
Sbjct: 306 ILTASADKNLRLYDSRTN---QGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGSYDNQNK 362
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
LWD RSPK PL+D+LGH +KV+ ++W++ +YI+SGG DN+VRVFK++
Sbjct: 363 LWDCRSPKAPLYDLLGHGEKVLDIDWTNPKYIVSGGSDNTVRVFKSR 409
|
|
| UNIPROTKB|B4HWV6 GM11446 "Ribosome biogenesis protein WDR12 homolog" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 53/107 (49%), Positives = 79/107 (73%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
I+T+S D L+++D +G++V++T+ H WVQ+V WS + LFVS ++DN K
Sbjct: 307 ILTASADKNLRLYDPRTN---QGSVVRNTYLGHNAWVQTVMWSTTEEFLFVSGAYDNQNK 363
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
LWD RSPK PL+D+LGH DKV+ ++WS+ +YI+SGG DN+VRVFK++
Sbjct: 364 LWDCRSPKAPLYDLLGHGDKVLDIDWSNPKYIVSGGVDNTVRVFKSR 410
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 183 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-24 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-22 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-16 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-15 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 6e-11 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-11 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 1e-07 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 2e-07 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 8e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 8e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-06 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 5e-05 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 5e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-05 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 3e-04 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 6e-04 | |
| PLN00181 | 793 | PLN00181, PLN00181, protein SPA1-RELATED; Provisio | 0.001 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.001 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 0.002 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 95.9 bits (239), Expect = 2e-24
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 10/129 (7%)
Query: 43 TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
L TLKGH + V +A + + S D T+++WD E G T + H +
Sbjct: 42 ELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE------CVRTLTGHTSY 95
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSG 160
V SV +SP D ++ S+S D ++K+WD+ + K L + GH D V V +S D ++ S
Sbjct: 96 VSSVAFSP-DGRILSSSSRDKTIKVWDVETGK-CLTTLRGHTDWVNSVAFSPDGTFVASS 153
Query: 161 GQDNSVRVF 169
QD +++++
Sbjct: 154 SQDGTIKLW 162
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 3e-24
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TLKGH ++ V ++ + + T S D T+K+WD E G + T H V+ V
Sbjct: 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG------ELLRTLKGHTGPVRDV 57
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
S L S S D +++LWDL + + + + GH V V +S D R + S +D
Sbjct: 58 AASADGTYLA-SGSSDKTIRLWDLETGEC-VRTLTGHTSYVSSVAFSPDGRILSSSSRDK 115
Query: 165 SVRVFKT 171
+++V+
Sbjct: 116 TIKVWDV 122
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 4e-24
Identities = 44/136 (32%), Positives = 73/136 (53%), Gaps = 10/136 (7%)
Query: 39 ILQKTPLITLKGHKEAISAVQWTAVDEIIT-SSWDHTLKIWDAELGGMKKGAIVKSTFSS 97
+ L TL+GH + +++V ++ + SS D T+K+WD G T +
Sbjct: 122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA------TLTG 175
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYI 157
H V SV +SP D + +S+S D ++KLWDL + K L + GHE+ V V +S Y+
Sbjct: 176 HTGEVNSVAFSP-DGEKLLSSSSDGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDGYL 233
Query: 158 M-SGGQDNSVRVFKTK 172
+ SG +D ++RV+ +
Sbjct: 234 LASGSEDGTIRVWDLR 249
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 1e-22
Identities = 39/126 (30%), Positives = 70/126 (55%), Gaps = 10/126 (7%)
Query: 47 TLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL GH +++V ++ +++++SS D T+K+WD + G + T H+ V SV
Sbjct: 172 TLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD-----LSTGKCLG-TLRGHENGVNSV 225
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDN 164
+SP D L S S D ++++WDLR+ + + GH + V + WS D + + SG D
Sbjct: 226 AFSP-DGYLLASGSEDGTIRVWDLRT-GECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
Query: 165 SVRVFK 170
++R++
Sbjct: 284 TIRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.7 bits (182), Expect = 4e-16
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 8/133 (6%)
Query: 43 TPLITLKGHKEAISAVQWTAVDEII--TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
+ TL+GH E+++++ ++ +++ SS D T+K+WD G ST + H +
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK------PLSTLAGHTD 199
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSG 160
V S+ +SP L S S D +++LWDL + K+ + GH D V+ D + SG
Sbjct: 200 PVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASG 259
Query: 161 GQDNSVRVFKTKH 173
D ++R++ +
Sbjct: 260 SSDGTIRLWDLRS 272
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.3 bits (173), Expect = 7e-15
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 39 ILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKKGAIVKSTFS 96
+ PL TL GH + +S++ ++ I + S D T+++WD + G +++ST S
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD-----LSTGKLLRSTLS 239
Query: 97 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYR 155
H + V S +SP D L S S D +++LWDLRS L + GH V+ V +S D +
Sbjct: 240 GHSDSVVSS-FSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGK 297
Query: 156 YIMSGGQDNSVRVFKTKHQPKSGQKSK 182
+ SG D +VR++ + +
Sbjct: 298 LLASGSSDGTVRLWDLETGKLLSSLTL 324
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.8 bits (151), Expect = 6e-12
Identities = 43/146 (29%), Positives = 71/146 (48%), Gaps = 13/146 (8%)
Query: 34 SFFQLILQKTPLITLKG-HKEAISAVQWTAVDE----IITSSWDHTLKIWDAELGGMKKG 88
+ L + + +L+G H ++S + ++ D + +SS D T+K+WD G
Sbjct: 90 KLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG---- 145
Query: 89 AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMC 148
+ T H E V S+ +SP L +S D ++KLWDLR+ K PL + GH D V
Sbjct: 146 -KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSS 203
Query: 149 VNWSDY--RYIMSGGQDNSVRVFKTK 172
+ +S I SG D ++R++
Sbjct: 204 LAFSPDGGLLIASGSSDGTIRLWDLS 229
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 6e-11
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 92 KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW 151
+ T H V V +SP D +L + S D ++K+WDL L + GH V V
Sbjct: 2 RRTLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAA 59
Query: 152 SDY-RYIMSGGQDNSVRVFKTK 172
S Y+ SG D ++R++ +
Sbjct: 60 SADGTYLASGSSDKTIRLWDLE 81
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.3 bits (142), Expect = 8e-11
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
+ L TL GH ++ +V ++ + + + S D T+++WD E + T H+
Sbjct: 274 SSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLE----TGKLLSSLTLKGHEG 329
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMS 159
V S+ +SP L S D +++LWDLR+ K L V+ V++S D R + S
Sbjct: 330 PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT--LEGHSNVLSVSFSPDGRVVSS 387
Query: 160 GGQDNSVRVFKTKH 173
G D +VR++
Sbjct: 388 GSTDGTVRLWDLST 401
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 1e-07
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 51/170 (30%)
Query: 44 PLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
P++ L + +S + W + ++ +S+++ +++WD + + +V + H++
Sbjct: 525 PVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWD-----VARSQLV-TEMKEHEKR 577
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKL----------------------------------- 126
V S+ +S DP L S S D SVKL
Sbjct: 578 VWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637
Query: 127 -------WDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVF 169
+DLR+PK+PL M+GH V V + D ++S DN+++++
Sbjct: 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLW 687
|
Length = 793 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 2e-07
Identities = 28/98 (28%), Positives = 54/98 (55%), Gaps = 4/98 (4%)
Query: 40 LQKTPLITLKGHKEAISAVQWT-AVDEIITS-SWDHTLKIWDA--ELGGMKKGAIVKSTF 95
++K P+I LKGH +I +Q+ EI+ S S D T+++W+ +K+ +
Sbjct: 62 MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCIL 121
Query: 96 SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK 133
HK+ + + W+P++ + S+ FD+ V +WD+ + K
Sbjct: 122 KGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK 159
|
Length = 568 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-07
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128
T H V SV +SP D L S S D +V++WD
Sbjct: 6 TLKGHTGPVTSVAFSP-DGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-07
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128
+ T H V SV +SP D + S S D ++KLWD
Sbjct: 4 LLKTLKGHTGPVTSVAFSP-DGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 45.1 bits (105), Expect = 7e-06
Identities = 39/135 (28%), Positives = 70/135 (51%), Gaps = 12/135 (8%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDEIITS--SWDHTLKIWDAELGGMKKGAIVKSTFSSH 98
+ +TLKGH+ +S++ ++ ++ S S D T+++WD G K
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK-------TLEG 369
Query: 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYI 157
V SV +SP D ++ S S D +V+LWDL + + + GH +V +++S D + +
Sbjct: 370 HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRN-LDGHTSRVTSLDFSPDGKSL 427
Query: 158 MSGGQDNSVRVFKTK 172
SG DN++R++ K
Sbjct: 428 ASGSSDNTIRLWDLK 442
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 5e-05
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79
L TLKGH +++V ++ + + S D T+++WD
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 5e-05
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79
L TLKGH +++V ++ + + + S D T+K+WD
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.0 bits (97), Expect = 8e-05
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 40 LQKTPLITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSH 98
L+ + + +V ++ +++S S D T+++WD G + + H
Sbjct: 358 LRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLR------NLDGH 411
Query: 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS 131
V S+ +SP D + S S DN+++LWDL++
Sbjct: 412 TSRVTSLDFSP-DGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 3e-04
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 16/83 (19%)
Query: 16 MTVGALLTLTNIEVTSLPS----------------FFQLILQKTPLITLKGHKEAISAVQ 59
+++G + T NI PS ++ L K PL T+ GH + +S V+
Sbjct: 609 VSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVR 668
Query: 60 WTAVDEIITSSWDHTLKIWDAEL 82
+ +++SS D+TLK+WD +
Sbjct: 669 FVDSSTLVSSSTDNTLKLWDLSM 691
|
Length = 793 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 6e-04
Identities = 27/121 (22%), Positives = 58/121 (47%), Gaps = 21/121 (17%)
Query: 78 WDAELGG----------MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 127
W+ E GG M+K ++K H + ++++P ++ S S D ++++W
Sbjct: 45 WEVEGGGLIGAIRLENQMRKPPVIK--LKGHTSSILDLQFNPCFSEILASGSEDLTIRVW 102
Query: 128 DLRSP-------KVPLFDMLGHEDKVMCVNWSDYRY-IM-SGGQDNSVRVFKTKHQPKSG 178
++ K P + GH+ K+ ++W+ Y IM S G D+ V ++ +++ ++
Sbjct: 103 EIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF 162
Query: 179 Q 179
Q
Sbjct: 163 Q 163
|
Length = 568 |
| >gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.001
Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 70 SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129
S DH + +D ++ + T H + V VR+ +D VS+S DN++KLWDL
Sbjct: 637 SADHKVYYYD-----LRNPKLPLCTMIGHSKTVSYVRF--VDSSTLVSSSTDNTLKLWDL 689
Query: 130 RSP-----KVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVF 169
+ PL +GH + V S YI +G + N V V+
Sbjct: 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735
|
Length = 793 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (81), Expect = 0.001
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 133 KVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFK 170
L + GH V V +S D + SG D +VRV+
Sbjct: 1 GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 42 KTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWD 79
+ TL GH +++++ W+ + + S D T++IWD
Sbjct: 251 GECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 34.2 bits (79), Expect = 0.002
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 132 PKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFK 170
L + GH V V +S D +Y+ SG D +++++
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 183 | |||
| KOG0286|consensus | 343 | 99.97 | ||
| KOG0271|consensus | 480 | 99.97 | ||
| KOG0272|consensus | 459 | 99.96 | ||
| KOG0272|consensus | 459 | 99.96 | ||
| KOG0263|consensus | 707 | 99.95 | ||
| KOG0315|consensus | 311 | 99.95 | ||
| KOG0263|consensus | 707 | 99.95 | ||
| KOG0271|consensus | 480 | 99.94 | ||
| KOG0266|consensus | 456 | 99.94 | ||
| KOG0266|consensus | 456 | 99.94 | ||
| KOG0279|consensus | 315 | 99.94 | ||
| KOG0279|consensus | 315 | 99.93 | ||
| KOG0285|consensus | 460 | 99.93 | ||
| KOG0302|consensus | 440 | 99.93 | ||
| KOG0284|consensus | 464 | 99.93 | ||
| KOG0264|consensus | 422 | 99.93 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.93 | |
| KOG0283|consensus | 712 | 99.92 | ||
| KOG0284|consensus | 464 | 99.92 | ||
| KOG0273|consensus | 524 | 99.92 | ||
| KOG0277|consensus | 311 | 99.92 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0313|consensus | 423 | 99.92 | ||
| KOG0276|consensus | 794 | 99.92 | ||
| KOG0277|consensus | 311 | 99.92 | ||
| KOG0645|consensus | 312 | 99.91 | ||
| KOG0286|consensus | 343 | 99.91 | ||
| KOG0291|consensus | 893 | 99.91 | ||
| KOG0295|consensus | 406 | 99.91 | ||
| KOG0291|consensus | 893 | 99.91 | ||
| KOG0292|consensus | 1202 | 99.91 | ||
| KOG0319|consensus | 775 | 99.91 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.9 | |
| KOG0316|consensus | 307 | 99.9 | ||
| KOG0265|consensus | 338 | 99.9 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.9 | |
| KOG0315|consensus | 311 | 99.9 | ||
| KOG0645|consensus | 312 | 99.9 | ||
| KOG0319|consensus | 775 | 99.9 | ||
| KOG0292|consensus | 1202 | 99.89 | ||
| KOG0285|consensus | 460 | 99.89 | ||
| KOG0275|consensus | 508 | 99.89 | ||
| KOG0265|consensus | 338 | 99.89 | ||
| KOG0269|consensus | 839 | 99.88 | ||
| KOG0316|consensus | 307 | 99.88 | ||
| KOG0296|consensus | 399 | 99.88 | ||
| KOG0302|consensus | 440 | 99.88 | ||
| KOG0276|consensus | 794 | 99.88 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.88 | |
| KOG0295|consensus | 406 | 99.88 | ||
| KOG0300|consensus | 481 | 99.87 | ||
| KOG0310|consensus | 487 | 99.87 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.87 | |
| KOG0278|consensus | 334 | 99.87 | ||
| KOG0318|consensus | 603 | 99.87 | ||
| KOG0273|consensus | 524 | 99.86 | ||
| KOG0281|consensus | 499 | 99.86 | ||
| KOG0282|consensus | 503 | 99.86 | ||
| KOG0306|consensus | 888 | 99.86 | ||
| KOG0772|consensus | 641 | 99.86 | ||
| KOG0264|consensus | 422 | 99.86 | ||
| KOG0293|consensus | 519 | 99.86 | ||
| KOG0640|consensus | 430 | 99.86 | ||
| KOG1407|consensus | 313 | 99.85 | ||
| KOG0647|consensus | 347 | 99.85 | ||
| KOG0289|consensus | 506 | 99.85 | ||
| KOG0973|consensus | 942 | 99.85 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.85 | |
| KOG0318|consensus | 603 | 99.85 | ||
| KOG0643|consensus | 327 | 99.85 | ||
| KOG0282|consensus | 503 | 99.85 | ||
| KOG0305|consensus | 484 | 99.85 | ||
| KOG0283|consensus | 712 | 99.85 | ||
| KOG0647|consensus | 347 | 99.84 | ||
| KOG0303|consensus | 472 | 99.84 | ||
| KOG0646|consensus | 476 | 99.84 | ||
| KOG0299|consensus | 479 | 99.84 | ||
| KOG0310|consensus | 487 | 99.84 | ||
| KOG0274|consensus | 537 | 99.83 | ||
| KOG0294|consensus | 362 | 99.83 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.83 | |
| KOG0308|consensus | 735 | 99.83 | ||
| KOG0281|consensus | 499 | 99.83 | ||
| KOG0643|consensus | 327 | 99.82 | ||
| KOG0639|consensus | 705 | 99.82 | ||
| KOG0269|consensus | 839 | 99.82 | ||
| KOG0296|consensus | 399 | 99.82 | ||
| KOG1036|consensus | 323 | 99.82 | ||
| KOG0274|consensus | 537 | 99.81 | ||
| KOG0301|consensus | 745 | 99.81 | ||
| KOG0267|consensus | 825 | 99.81 | ||
| KOG0641|consensus | 350 | 99.8 | ||
| KOG0270|consensus | 463 | 99.8 | ||
| KOG0308|consensus | 735 | 99.8 | ||
| KOG0313|consensus | 423 | 99.79 | ||
| KOG0294|consensus | 362 | 99.79 | ||
| KOG0973|consensus | 942 | 99.79 | ||
| KOG0303|consensus | 472 | 99.79 | ||
| KOG0293|consensus | 519 | 99.79 | ||
| KOG0290|consensus | 364 | 99.78 | ||
| KOG1446|consensus | 311 | 99.78 | ||
| KOG0270|consensus | 463 | 99.78 | ||
| KOG1274|consensus | 933 | 99.78 | ||
| KOG0321|consensus | 720 | 99.77 | ||
| KOG1332|consensus | 299 | 99.77 | ||
| KOG4328|consensus | 498 | 99.77 | ||
| KOG1332|consensus | 299 | 99.77 | ||
| KOG0305|consensus | 484 | 99.76 | ||
| KOG0306|consensus | 888 | 99.76 | ||
| KOG1446|consensus | 311 | 99.76 | ||
| KOG0267|consensus | 825 | 99.76 | ||
| KOG0649|consensus | 325 | 99.76 | ||
| KOG0278|consensus | 334 | 99.76 | ||
| KOG2048|consensus | 691 | 99.76 | ||
| KOG1034|consensus | 385 | 99.75 | ||
| KOG0289|consensus | 506 | 99.75 | ||
| KOG1007|consensus | 370 | 99.75 | ||
| KOG0641|consensus | 350 | 99.75 | ||
| KOG1539|consensus | 910 | 99.75 | ||
| KOG1407|consensus | 313 | 99.74 | ||
| KOG0268|consensus | 433 | 99.74 | ||
| KOG1063|consensus | 764 | 99.74 | ||
| KOG1007|consensus | 370 | 99.74 | ||
| KOG0275|consensus | 508 | 99.74 | ||
| KOG2445|consensus | 361 | 99.74 | ||
| KOG0640|consensus | 430 | 99.74 | ||
| KOG2919|consensus | 406 | 99.73 | ||
| KOG2096|consensus | 420 | 99.73 | ||
| KOG0301|consensus | 745 | 99.72 | ||
| KOG1445|consensus | 1012 | 99.72 | ||
| KOG1188|consensus | 376 | 99.71 | ||
| KOG4283|consensus | 397 | 99.71 | ||
| KOG0299|consensus | 479 | 99.71 | ||
| KOG0288|consensus | 459 | 99.71 | ||
| KOG0268|consensus | 433 | 99.71 | ||
| KOG4283|consensus | 397 | 99.71 | ||
| KOG0772|consensus | 641 | 99.71 | ||
| KOG0300|consensus | 481 | 99.71 | ||
| KOG1523|consensus | 361 | 99.7 | ||
| KOG0642|consensus | 577 | 99.69 | ||
| KOG2394|consensus | 636 | 99.68 | ||
| KOG0307|consensus | 1049 | 99.68 | ||
| KOG1036|consensus | 323 | 99.68 | ||
| KOG1009|consensus | 434 | 99.68 | ||
| KOG1273|consensus | 405 | 99.68 | ||
| KOG1445|consensus | 1012 | 99.67 | ||
| KOG0288|consensus | 459 | 99.67 | ||
| KOG1408|consensus | 1080 | 99.66 | ||
| KOG1034|consensus | 385 | 99.66 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.65 | |
| KOG0639|consensus | 705 | 99.64 | ||
| KOG2048|consensus | 691 | 99.64 | ||
| KOG4328|consensus | 498 | 99.64 | ||
| KOG2445|consensus | 361 | 99.64 | ||
| KOG1310|consensus | 758 | 99.64 | ||
| KOG1009|consensus | 434 | 99.63 | ||
| KOG0642|consensus | 577 | 99.62 | ||
| KOG1063|consensus | 764 | 99.62 | ||
| KOG0646|consensus | 476 | 99.61 | ||
| KOG1408|consensus | 1080 | 99.59 | ||
| KOG2096|consensus | 420 | 99.58 | ||
| KOG0307|consensus | 1049 | 99.57 | ||
| KOG1274|consensus | 933 | 99.56 | ||
| KOG0644|consensus | 1113 | 99.56 | ||
| KOG2110|consensus | 391 | 99.55 | ||
| KOG0771|consensus | 398 | 99.55 | ||
| KOG4378|consensus | 673 | 99.55 | ||
| KOG1273|consensus | 405 | 99.53 | ||
| KOG4378|consensus | 673 | 99.52 | ||
| KOG1188|consensus | 376 | 99.52 | ||
| KOG2106|consensus | 626 | 99.52 | ||
| KOG4227|consensus | 609 | 99.51 | ||
| KOG2111|consensus | 346 | 99.5 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.5 | |
| KOG2055|consensus | 514 | 99.49 | ||
| KOG1538|consensus | 1081 | 99.49 | ||
| KOG0322|consensus | 323 | 99.49 | ||
| KOG2919|consensus | 406 | 99.48 | ||
| KOG1539|consensus | 910 | 99.47 | ||
| KOG2106|consensus | 626 | 99.47 | ||
| KOG0321|consensus | 720 | 99.46 | ||
| KOG0290|consensus | 364 | 99.46 | ||
| KOG2055|consensus | 514 | 99.45 | ||
| KOG4227|consensus | 609 | 99.44 | ||
| KOG1587|consensus | 555 | 99.44 | ||
| KOG1310|consensus | 758 | 99.44 | ||
| KOG0650|consensus | 733 | 99.43 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.42 | |
| KOG2394|consensus | 636 | 99.41 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.41 | |
| KOG0644|consensus | 1113 | 99.41 | ||
| KOG1523|consensus | 361 | 99.4 | ||
| KOG1963|consensus | 792 | 99.39 | ||
| KOG3881|consensus | 412 | 99.39 | ||
| KOG0974|consensus | 967 | 99.38 | ||
| KOG0650|consensus | 733 | 99.37 | ||
| KOG2321|consensus | 703 | 99.37 | ||
| KOG1524|consensus | 737 | 99.37 | ||
| KOG1587|consensus | 555 | 99.35 | ||
| KOG1409|consensus | 404 | 99.35 | ||
| KOG0649|consensus | 325 | 99.34 | ||
| KOG0280|consensus | 339 | 99.34 | ||
| KOG3914|consensus | 390 | 99.34 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.33 | |
| KOG0771|consensus | 398 | 99.32 | ||
| KOG1272|consensus | 545 | 99.32 | ||
| KOG1272|consensus | 545 | 99.31 | ||
| KOG1524|consensus | 737 | 99.3 | ||
| KOG0280|consensus | 339 | 99.29 | ||
| KOG1517|consensus | 1387 | 99.27 | ||
| KOG1963|consensus | 792 | 99.27 | ||
| KOG2321|consensus | 703 | 99.24 | ||
| KOG1517|consensus | 1387 | 99.23 | ||
| KOG1240|consensus | 1431 | 99.21 | ||
| KOG2110|consensus | 391 | 99.21 | ||
| KOG2111|consensus | 346 | 99.19 | ||
| KOG2139|consensus | 445 | 99.18 | ||
| KOG1409|consensus | 404 | 99.18 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.16 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.12 | |
| KOG0974|consensus | 967 | 99.11 | ||
| KOG1538|consensus | 1081 | 99.11 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.11 | |
| KOG4547|consensus | 541 | 99.1 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.09 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.09 | |
| KOG1354|consensus | 433 | 99.06 | ||
| KOG0322|consensus | 323 | 99.06 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.06 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.06 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.06 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.06 | |
| KOG2695|consensus | 425 | 99.04 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 99.03 | |
| KOG4714|consensus | 319 | 99.03 | ||
| KOG4714|consensus | 319 | 99.01 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.0 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.99 | |
| KOG2139|consensus | 445 | 98.98 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.95 | |
| KOG0309|consensus | 1081 | 98.94 | ||
| KOG4190|consensus | 1034 | 98.9 | ||
| KOG1334|consensus | 559 | 98.87 | ||
| KOG1240|consensus | 1431 | 98.86 | ||
| KOG1064|consensus | 2439 | 98.86 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.83 | |
| KOG4497|consensus | 447 | 98.83 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.82 | |
| KOG3914|consensus | 390 | 98.8 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.8 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.79 | |
| KOG2315|consensus | 566 | 98.79 | ||
| KOG3881|consensus | 412 | 98.79 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.77 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.75 | |
| KOG1334|consensus | 559 | 98.73 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.71 | |
| KOG4497|consensus | 447 | 98.68 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.67 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.67 | |
| KOG1064|consensus | 2439 | 98.66 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.63 | |
| KOG0309|consensus | 1081 | 98.63 | ||
| KOG1645|consensus | 463 | 98.59 | ||
| KOG2041|consensus | 1189 | 98.59 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.59 | |
| KOG1645|consensus | 463 | 98.58 | ||
| KOG4532|consensus | 344 | 98.56 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.55 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.53 | |
| KOG1354|consensus | 433 | 98.5 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.49 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.47 | |
| KOG4532|consensus | 344 | 98.45 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.44 | |
| KOG4547|consensus | 541 | 98.42 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.41 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.41 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.38 | |
| KOG1912|consensus | 1062 | 98.35 | ||
| KOG2695|consensus | 425 | 98.3 | ||
| KOG1275|consensus | 1118 | 98.3 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.19 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.18 | |
| KOG4640|consensus | 665 | 98.15 | ||
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.15 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 98.13 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.09 | |
| KOG1912|consensus | 1062 | 98.08 | ||
| KOG1008|consensus | 783 | 98.05 | ||
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 98.04 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.0 | |
| KOG2315|consensus | 566 | 97.99 | ||
| KOG3621|consensus | 726 | 97.98 | ||
| KOG2066|consensus | 846 | 97.97 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 97.95 | |
| KOG4190|consensus | 1034 | 97.94 | ||
| KOG1832|consensus | 1516 | 97.94 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.91 | |
| KOG2041|consensus | 1189 | 97.9 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.84 | |
| KOG1275|consensus | 1118 | 97.8 | ||
| KOG3621|consensus | 726 | 97.79 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.77 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.75 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.74 | |
| KOG4640|consensus | 665 | 97.69 | ||
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 97.68 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 97.67 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.66 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 97.65 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.65 | |
| KOG2395|consensus | 644 | 97.56 | ||
| KOG3617|consensus | 1416 | 97.53 | ||
| KOG3617|consensus | 1416 | 97.51 | ||
| KOG2314|consensus | 698 | 97.5 | ||
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.5 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.49 | |
| KOG2079|consensus | 1206 | 97.46 | ||
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.46 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.45 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.38 | |
| KOG2066|consensus | 846 | 97.34 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.28 | |
| KOG2444|consensus | 238 | 97.28 | ||
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.23 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.23 | |
| KOG0882|consensus | 558 | 97.2 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.18 | |
| KOG1008|consensus | 783 | 97.18 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.13 | |
| KOG0882|consensus | 558 | 97.09 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.08 | |
| KOG1832|consensus | 1516 | 97.01 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 96.96 | |
| KOG2114|consensus | 933 | 96.95 | ||
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.94 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 96.79 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 96.78 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.74 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.73 | |
| KOG4649|consensus | 354 | 96.64 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.63 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 96.54 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.46 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.45 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 96.34 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.32 | |
| KOG1920|consensus | 1265 | 96.25 | ||
| KOG4649|consensus | 354 | 96.11 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.99 | |
| KOG2079|consensus | 1206 | 95.92 | ||
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.92 | |
| KOG4499|consensus | 310 | 95.91 | ||
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.87 | |
| KOG2114|consensus | 933 | 95.86 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.83 | |
| KOG1920|consensus | 1265 | 95.67 | ||
| KOG2314|consensus | 698 | 95.66 | ||
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 95.61 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 95.57 | |
| KOG3630|consensus | 1405 | 95.5 | ||
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.4 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 95.39 | |
| KOG4460|consensus | 741 | 95.37 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 95.33 | |
| KOG4441|consensus | 571 | 95.16 | ||
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 95.16 | |
| KOG2377|consensus | 657 | 95.03 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.95 | |
| KOG1916|consensus | 1283 | 94.82 | ||
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.61 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.61 | |
| KOG3630|consensus | 1405 | 94.36 | ||
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 94.31 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 94.24 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 94.02 | |
| KOG2395|consensus | 644 | 93.71 | ||
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 93.68 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 93.22 | |
| KOG2444|consensus | 238 | 92.96 | ||
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 92.84 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 92.78 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 92.68 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 92.66 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 92.41 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 92.34 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 91.95 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 91.89 | |
| KOG4441|consensus | 571 | 91.72 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 91.72 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 91.09 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 91.01 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 90.89 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 90.79 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.65 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 90.47 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 90.33 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 90.32 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 90.22 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 90.2 | |
| KOG1900|consensus | 1311 | 89.55 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 89.33 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 89.0 | |
| KOG2247|consensus | 615 | 88.76 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 88.51 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 88.47 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.46 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 88.43 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.29 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 88.12 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 87.91 | |
| KOG2377|consensus | 657 | 87.76 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 87.59 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 86.74 | |
| KOG1916|consensus | 1283 | 86.69 | ||
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 86.38 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 85.58 | |
| KOG1896|consensus | 1366 | 85.57 | ||
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 85.23 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 85.19 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 85.09 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 84.98 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 84.69 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 84.02 | |
| PF12341 | 27 | DUF3639: Protein of unknown function (DUF3639) ; I | 83.03 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 82.42 | |
| smart00564 | 33 | PQQ beta-propeller repeat. Beta-propeller repeat o | 82.28 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 82.21 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 81.93 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 81.71 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 81.6 | |
| KOG3616|consensus | 1636 | 81.09 | ||
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 80.56 | |
| PF13570 | 40 | PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A. | 80.3 | |
| KOG1897|consensus | 1096 | 80.04 |
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=167.80 Aligned_cols=162 Identities=25% Similarity=0.374 Sum_probs=141.7
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~ 84 (183)
.+++.||+|+|.+++.+. ..+|.+. ..+.....+....+.+|.+.+.++.|-+++.|++++.|.++.+||+++++
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls-~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~ 177 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLS-TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ 177 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecc-cccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce
Confidence 568899999999999987 3344443 11123344556789999999999999999999999999999999999988
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQD 163 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d 163 (183)
. ...+.+|.+.|.+++++|.+++.+++|+.|+..++||+|.+.+ ++.+.+|++.|++|+|.|+ .-+++|+.|
T Consensus 178 ~------~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c-~qtF~ghesDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 178 Q------TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC-VQTFEGHESDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred E------EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce-eEeecccccccceEEEccCCCeeeecCCC
Confidence 6 6789999999999999998899999999999999999999987 9999999999999999976 889999999
Q ss_pred CcEEEEEecCCCCCC
Q psy2113 164 NSVRVFKTKHQPKSG 178 (183)
Q Consensus 164 g~i~iwd~~~~~~~~ 178 (183)
++.|+||+|..++..
T Consensus 251 ~tcRlyDlRaD~~~a 265 (343)
T KOG0286|consen 251 ATCRLYDLRADQELA 265 (343)
T ss_pred ceeEEEeecCCcEEe
Confidence 999999999976554
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=174.03 Aligned_cols=160 Identities=29% Similarity=0.575 Sum_probs=141.6
Q ss_pred cceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEE
Q psy2113 4 NKFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW 78 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vw 78 (183)
.+.+-.++++.|+|+|..++.+. .++|+ ..+..+..+.++|...|.|++|+|++. |++|+.||+|++|
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD-------~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWD-------LDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW 184 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeec-------cCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence 46677889999999999998865 88884 457778899999999999999999987 9999999999999
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecC----CCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI----DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY 154 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 154 (183)
|..++++. ...+.+|...|++++|.|- ..+++++++.||.+++||+..+.+ +..+.+|..+|+|++|--+
T Consensus 185 dpktg~~~-----g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~-~~~lsgHT~~VTCvrwGG~ 258 (480)
T KOG0271|consen 185 DPKTGQQI-----GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC-VRTLSGHTASVTCVRWGGE 258 (480)
T ss_pred cCCCCCcc-----cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE-EEEeccCccceEEEEEcCC
Confidence 99887763 5678999999999999763 356899999999999999998877 8899999999999999977
Q ss_pred cEEEEecCCCcEEEEEecCCCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.++++|+.|++|++|+...+..
T Consensus 259 gliySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 259 GLIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred ceEEecCCCceEEEEEccchhH
Confidence 8999999999999999887543
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=177.14 Aligned_cols=158 Identities=22% Similarity=0.353 Sum_probs=141.0
Q ss_pred eeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 6 FGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
.+..+..++|+|+|.++.++. .++| +..++.++...+||...|++++|+++|. +++|+.|..-+|||+
T Consensus 260 H~~RVs~VafHPsG~~L~TasfD~tWRlW-------D~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl 332 (459)
T KOG0272|consen 260 HLARVSRVAFHPSGKFLGTASFDSTWRLW-------DLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL 332 (459)
T ss_pred chhhheeeeecCCCceeeecccccchhhc-------ccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence 345567899999999999877 5556 5567777778899999999999999887 578999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC--CcEEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD--YRYIM 158 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~ 158 (183)
+++.+ +-.+.+|..+|.+++|+| +|..++||+.|++++|||++..+. +..+.+|.+.|+.|+|.| +.+|+
T Consensus 333 Rtgr~------im~L~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~ 404 (459)
T KOG0272|consen 333 RTGRC------IMFLAGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLV 404 (459)
T ss_pred ccCcE------EEEecccccceeeEeECC-CceEEeecCCCCcEEEeeeccccc-ceecccccchhhheEecccCCeEEE
Confidence 99987 668899999999999999 899999999999999999999887 899999999999999997 38999
Q ss_pred EecCCCcEEEEEecCCCCCC
Q psy2113 159 SGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~~~~ 178 (183)
+++.|++++||..++.....
T Consensus 405 TasyD~t~kiWs~~~~~~~k 424 (459)
T KOG0272|consen 405 TASYDNTVKIWSTRTWSPLK 424 (459)
T ss_pred EcccCcceeeecCCCcccch
Confidence 99999999999988877654
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=171.35 Aligned_cols=150 Identities=27% Similarity=0.441 Sum_probs=136.0
Q ss_pred eceeEEEEEeecCcEEEEEEe----ccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTNI----EVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
.--+.+++|.++|.+++.+.+ ++| +..++..+..+.+|..+|.+++|+|+|+ +++||.|++++|||++
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvW-------DlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVW-------DLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred ccccceeEecCCCceeeccCccchhhee-------ecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 345678999999999999873 445 5678899999999999999999999998 9999999999999999
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
.... ...+.+|..-|+.++|+|..+.+|+|++.|+++++|..++..+ +..+.+|++.|.+++.+++ ..++++
T Consensus 376 ~r~~------ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~-~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 376 MRSE------LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP-LKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred cccc------ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCccc-chhhcCCccceEEEEeccCCceEEEe
Confidence 7765 5678899999999999998889999999999999999999887 8899999999999999965 899999
Q ss_pred cCCCcEEEEE
Q psy2113 161 GQDNSVRVFK 170 (183)
Q Consensus 161 ~~dg~i~iwd 170 (183)
+.|+++++|.
T Consensus 449 s~DRT~KLW~ 458 (459)
T KOG0272|consen 449 SFDRTIKLWR 458 (459)
T ss_pred ccCceeeecc
Confidence 9999999996
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=175.61 Aligned_cols=156 Identities=26% Similarity=0.420 Sum_probs=137.4
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~ 81 (183)
...+..+.|+|-|.+++.+. -++|. .....++..+.+|.+.|.|+.|+|+. .+++||.|.+||+||+.
T Consensus 493 ~~PVwdV~F~P~GyYFatas~D~tArLWs-------~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~ 565 (707)
T KOG0263|consen 493 LAPVWDVQFAPRGYYFATASHDQTARLWS-------TDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS 565 (707)
T ss_pred CcceeeEEecCCceEEEecCCCceeeeee-------cccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcC
Confidence 34566788999999988875 44553 44567788899999999999999885 48999999999999999
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEe
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSG 160 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 160 (183)
++.. .+.+.+|.++|.+++|+| .+++|++|+.||.|++||+.+++. +..+.+|.+.|.++.|+ ++..|++|
T Consensus 566 ~G~~------VRiF~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~dg~vLasg 637 (707)
T KOG0263|consen 566 TGNS------VRIFTGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSRDGNVLASG 637 (707)
T ss_pred CCcE------EEEecCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcc-hhhhhcccCceeEEEEecCCCEEEec
Confidence 9886 778999999999999999 999999999999999999999886 88899999999999999 66999999
Q ss_pred cCCCcEEEEEecCCCCC
Q psy2113 161 GQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~~~ 177 (183)
+.|.+|++||+......
T Consensus 638 g~DnsV~lWD~~~~~~~ 654 (707)
T KOG0263|consen 638 GADNSVRLWDLTKVIEL 654 (707)
T ss_pred CCCCeEEEEEchhhccc
Confidence 99999999998775543
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=152.03 Aligned_cols=165 Identities=21% Similarity=0.299 Sum_probs=139.4
Q ss_pred eeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
.+..+...|++..++++. +++|++ +.....++.++++|...|..+.|.-+|+ +++|+.||+++|||++...
T Consensus 42 qVNrLeiTpdk~~LAaa~~qhvRlyD~-----~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~ 116 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAGNQHVRLYDL-----NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS 116 (311)
T ss_pred ceeeEEEcCCcchhhhccCCeeEEEEc-----cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc
Confidence 456778889999888876 666655 3445558999999999999999998877 8899999999999998754
Q ss_pred Cc------------------------------------------------------------------------------
Q psy2113 85 MK------------------------------------------------------------------------------ 86 (183)
Q Consensus 85 ~~------------------------------------------------------------------------------ 86 (183)
+.
T Consensus 117 ~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 117 CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 33
Q ss_pred ------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEE
Q psy2113 87 ------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMS 159 (183)
Q Consensus 87 ------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~ 159 (183)
....++..++.|.+.+..+.++| +..+|++++.|.++++|+.++.-.....+.+|...++..+|+ ++.+|++
T Consensus 197 ~~~~~~s~l~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred cCCCccccceEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEe
Confidence 33456667889999999999999 899999999999999999998733356788999999999999 6699999
Q ss_pred ecCCCcEEEEEecCCCCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~~~~ 179 (183)
++.|+.+++||++.+++..+
T Consensus 276 assd~~~rlW~~~~~k~v~q 295 (311)
T KOG0315|consen 276 ASSDHTARLWDLSAGKEVRQ 295 (311)
T ss_pred cCCCCceeecccccCceeee
Confidence 99999999999999986554
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=172.61 Aligned_cols=159 Identities=23% Similarity=0.370 Sum_probs=142.1
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
+....+.+..|+|+.+++..+. +++|.+ .+...+-..++|..+|..+.|+|.|. |+++|.|++.++|.
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl-------~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs 521 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSL-------DTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWS 521 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeec-------ccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeee
Confidence 4556789999999999988765 788855 45666777889999999999999987 99999999999999
Q ss_pred cCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEE
Q psy2113 80 AELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIM 158 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~ 158 (183)
...... .+.+.+|-..|.|+.|+| +.+++++|+.|.++++||+.++.. +..+.+|.++|.+++|+|. .+|+
T Consensus 522 ~d~~~P------lRifaghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~-VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 522 TDHNKP------LRIFAGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNS-VRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred cccCCc------hhhhcccccccceEEECC-cccccccCCCCceEEEEEcCCCcE-EEEecCCCCceEEEEEcCCCceEe
Confidence 887654 668889999999999999 899999999999999999999987 8999999999999999975 9999
Q ss_pred EecCCCcEEEEEecCCCCCC
Q psy2113 159 SGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~~~~ 178 (183)
+|+.||.|.+||+..+....
T Consensus 594 Sg~ed~~I~iWDl~~~~~v~ 613 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANGSLVK 613 (707)
T ss_pred ecccCCcEEEEEcCCCcchh
Confidence 99999999999999976554
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=159.45 Aligned_cols=125 Identities=32% Similarity=0.553 Sum_probs=114.2
Q ss_pred ceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 44 PLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
....+.+|.++|.++.|+|++. |++|+.|.++|+||+.+..+ ..+.++|...|.|++|+| ++..|++|+.||
T Consensus 107 CssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp------~~t~KgH~~WVlcvawsP-Dgk~iASG~~dg 179 (480)
T KOG0271|consen 107 CSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP------LFTCKGHKNWVLCVAWSP-DGKKIASGSKDG 179 (480)
T ss_pred eccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc------ceeecCCccEEEEEEECC-CcchhhccccCC
Confidence 4457789999999999999876 99999999999999988765 778899999999999999 899999999999
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEecC-----C-cEEEEecCCCcEEEEEecCCC
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-----Y-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
.|++||.+++++....+.+|...|++++|.| + .+|++++.||.|+|||+..+.
T Consensus 180 ~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~ 238 (480)
T KOG0271|consen 180 SIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT 238 (480)
T ss_pred eEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce
Confidence 9999999999987889999999999999974 2 789999999999999988754
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-25 Score=165.11 Aligned_cols=152 Identities=29% Similarity=0.473 Sum_probs=129.5
Q ss_pred EEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC-C
Q psy2113 11 LGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG-G 84 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~-~ 84 (183)
..+.|+++|..++... +.+|....... .....+.+|...|++++|+|++. +++++.|+++++||+... .
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~ 237 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR 237 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccc-----hhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe
Confidence 3478999999988765 55565421111 35566689999999999999885 899999999999999433 3
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQD 163 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d 163 (183)
. ...+.+|...|++++|+| .++++++|+.|++|++||++++++ +..+.+|.+.|++++|+++ .+|++++.|
T Consensus 238 ~------~~~l~gH~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~-~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 238 N------LKTLKGHSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGEC-VRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred E------EEEecCCCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeE-EEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 3 678899999999999999 669999999999999999999876 8899999999999999955 899999999
Q ss_pred CcEEEEEecCCC
Q psy2113 164 NSVRVFKTKHQP 175 (183)
Q Consensus 164 g~i~iwd~~~~~ 175 (183)
|.|++||+.++.
T Consensus 310 ~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 310 GTIRVWDLETGS 321 (456)
T ss_pred ccEEEEECCCCc
Confidence 999999999988
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=162.25 Aligned_cols=160 Identities=26% Similarity=0.463 Sum_probs=136.2
Q ss_pred eeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 6 FGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
....+.+++|+|++..++.+. +++|++ ......+.++++|...|++++|+|.+. +++|+.|++|++||+
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~------~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~ 275 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL------KDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDV 275 (456)
T ss_pred cccceeeeEECCCCcEEEEecCCceEEEeec------cCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEec
Confidence 445678899999998777765 777864 235577889999999999999998875 899999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcc-eEEeccCCCc--EEEEEecCC-cE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP-LFDMLGHEDK--VMCVNWSDY-RY 156 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~--v~~~~~~~~-~~ 156 (183)
+++++ ...+.+|...|++++|++ +++++++++.|+.|++||+.++... ...+..+... ++++.|+|+ .+
T Consensus 276 ~~~~~------~~~l~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 276 RTGEC------VRKLKGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY 348 (456)
T ss_pred cCCeE------EEeeeccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence 98776 778999999999999999 8999999999999999999998831 4555666555 999999966 99
Q ss_pred EEEecCCCcEEEEEecCCCCCC
Q psy2113 157 IMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+++++.|+.+++||++......
T Consensus 349 ll~~~~d~~~~~w~l~~~~~~~ 370 (456)
T KOG0266|consen 349 LLSASLDRTLKLWDLRSGKSVG 370 (456)
T ss_pred EEEecCCCeEEEEEccCCccee
Confidence 9999999999999999876554
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.8e-25 Score=145.88 Aligned_cols=155 Identities=26% Similarity=0.440 Sum_probs=130.2
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
....++.+++|.+...+. +++| +...+++.+.|.+|...|.+++|++++. +++|+.|.+|.+|+....
T Consensus 65 ~v~dv~~s~dg~~alS~swD~~lrlW-------Dl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ 137 (315)
T KOG0279|consen 65 FVSDVVLSSDGNFALSASWDGTLRLW-------DLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV 137 (315)
T ss_pred EecceEEccCCceEEeccccceEEEE-------EecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc
Confidence 456778889998877654 6666 4556788899999999999999998765 999999999999998754
Q ss_pred CCccCceeEEEeec--CCcceEEEEEecCC-CCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEE
Q psy2113 84 GMKKGAIVKSTFSS--HKEWVQSVRWSPID-PQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 84 ~~~~~~~~~~~~~~--~~~~v~~~~~~p~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~ 159 (183)
. ...... +...|.|++|+|+. ..+|++++.|+++++||+++.+. ...+.+|.+.++.+.++|+ ..+++
T Consensus 138 c-------k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l-~~~~~gh~~~v~t~~vSpDGslcas 209 (315)
T KOG0279|consen 138 C-------KYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQL-RTTFIGHSGYVNTVTVSPDGSLCAS 209 (315)
T ss_pred E-------EEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcch-hhccccccccEEEEEECCCCCEEec
Confidence 3 223322 37889999999953 57999999999999999999876 7889999999999999966 88999
Q ss_pred ecCCCcEEEEEecCCCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~~~ 178 (183)
|+.||++.+||++.++...
T Consensus 210 Ggkdg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKNLY 228 (315)
T ss_pred CCCCceEEEEEccCCceeE
Confidence 9999999999999987643
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-24 Score=143.24 Aligned_cols=161 Identities=27% Similarity=0.358 Sum_probs=128.5
Q ss_pred eceeEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 7 GILTLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
...+.+++..+.+..+.... +-+|.+... +...+.++..+++|...|..+..++++. .++++.|+++++||+
T Consensus 15 ~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d--d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl 92 (315)
T KOG0279|consen 15 TDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD--DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL 92 (315)
T ss_pred CceEEEEEeecCCCceEEEcccceEEEEEEeccC--ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence 34556666666654433322 334554433 5667788999999999999999998876 789999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc-CCCcEEEEEecCC---cE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG-HEDKVMCVNWSDY---RY 156 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~---~~ 156 (183)
.+++. .+.+.+|...|.+++|+| +.+++++|+.|.+|++|++..... ...... +.+.|.++.|+|+ .+
T Consensus 93 ~~g~~------t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck-~t~~~~~~~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 93 ATGES------TRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCK-YTIHEDSHREWVSCVRFSPNESNPI 164 (315)
T ss_pred cCCcE------EEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEE-EEEecCCCcCcEEEEEEcCCCCCcE
Confidence 98865 778999999999999999 889999999999999999987643 322222 3789999999975 69
Q ss_pred EEEecCCCcEEEEEecCCCCC
Q psy2113 157 IMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~~~~~ 177 (183)
|++++.|++|++||+++.+..
T Consensus 165 Ivs~s~DktvKvWnl~~~~l~ 185 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRNCQLR 185 (315)
T ss_pred EEEccCCceEEEEccCCcchh
Confidence 999999999999999987654
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9e-25 Score=150.53 Aligned_cols=155 Identities=19% Similarity=0.322 Sum_probs=138.7
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~ 82 (183)
..+-++++.|...+++.+. +++| +...++...++.+|...|..+++++-. ++++++.|+.|+-||++.
T Consensus 152 gWVr~vavdP~n~wf~tgs~DrtikIw-------Dlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~ 224 (460)
T KOG0285|consen 152 GWVRSVAVDPGNEWFATGSADRTIKIW-------DLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEY 224 (460)
T ss_pred ceEEEEeeCCCceeEEecCCCceeEEE-------EcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechh
Confidence 4566888999999999876 7778 556888889999999999999999654 589999999999999998
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~ 161 (183)
++. ++.+.+|-..|.|++.+| .-+.|++|+.|.++++||+++... +..+.+|..+|.++.+.+ +..+++|+
T Consensus 225 nkv------IR~YhGHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~-V~~l~GH~~~V~~V~~~~~dpqvit~S 296 (460)
T KOG0285|consen 225 NKV------IRHYHGHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRAS-VHVLSGHTNPVASVMCQPTDPQVITGS 296 (460)
T ss_pred hhh------HHHhccccceeEEEeccc-cceeEEecCCcceEEEeeecccce-EEEecCCCCcceeEEeecCCCceEEec
Confidence 876 667889999999999999 788999999999999999999876 999999999999999985 48999999
Q ss_pred CCCcEEEEEecCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKS 177 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~ 177 (183)
.|++|++||++.++..
T Consensus 297 ~D~tvrlWDl~agkt~ 312 (460)
T KOG0285|consen 297 HDSTVRLWDLRAGKTM 312 (460)
T ss_pred CCceEEEeeeccCcee
Confidence 9999999999988754
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-25 Score=151.41 Aligned_cols=164 Identities=21% Similarity=0.395 Sum_probs=127.7
Q ss_pred cceeceeEEEEEee--cCcEEEE---EEeccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEE
Q psy2113 4 NKFGILTLGVIFMT--VGALLTL---TNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLK 76 (183)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~ 76 (183)
+..+..-+++.||| .|+++.. ..+++|......+-.. ...+.+|+.+|..|+|+|. +.|++||.|++|+
T Consensus 208 ~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd----~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIr 283 (440)
T KOG0302|consen 208 NGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVD----QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIR 283 (440)
T ss_pred cccCccceeeecccccccccccCccccceEeeeeccCceeec----CccccccccchhhhccCCccCceEEeeecCceEE
Confidence 34455667889999 4455533 2377776554322211 2346679999999999976 5599999999999
Q ss_pred EEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC--cceEEeccCCCcEEEEEecCC
Q psy2113 77 IWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK--VPLFDMLGHEDKVMCVNWSDY 154 (183)
Q Consensus 77 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~ 154 (183)
|||++.+.... ....+.|.+.|+.|+|+. ...+|++|+.||++++||+|+-+ .++..+.-|..+|+++.|+|.
T Consensus 284 IWDiRs~~~~~----~~~~kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 284 IWDIRSGPKKA----AVSTKAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred EEEecCCCccc----eeEeeccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 99999864322 223478999999999999 66699999999999999999643 468899999999999999964
Q ss_pred --cEEEEecCCCcEEEEEecCCCC
Q psy2113 155 --RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 155 --~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
..|++++.|.+|.+||+.-..-
T Consensus 359 e~s~iaasg~D~QitiWDlsvE~D 382 (440)
T KOG0302|consen 359 EDSVIAASGEDNQITIWDLSVEAD 382 (440)
T ss_pred cCceEEeccCCCcEEEEEeeccCC
Confidence 8899999999999999876543
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=156.18 Aligned_cols=152 Identities=28% Similarity=0.448 Sum_probs=130.5
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccC-CCeeEEEEccC-CeEEEEeCCCeEEEEEcC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHK-EAISAVQWTAV-DEIITSSWDHTLKIWDAE 81 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~ 81 (183)
-.+-++.+++++.++..++ +++|... ...+..+++|. ..|++++|+|. .+|++|+.|++|+|||..
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpn--------mnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~ 210 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKGGMIKYWQPN--------MNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFR 210 (464)
T ss_pred ccceeEEEccCCCEEEEcCCCceEEecccc--------hhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEecc
Confidence 3456788999999998876 8888642 22334455555 89999999965 569999999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
..+. ...+.+|.-.|.+++|+| ...++++|+.|..|++||.+++.+ +..+.+|...|..+.|.++ ++|+++
T Consensus 211 ~~ke------e~vL~GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~c-l~tlh~HKntVl~~~f~~n~N~Llt~ 282 (464)
T KOG0284|consen 211 MPKE------ERVLRGHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSC-LATLHGHKNTVLAVKFNPNGNWLLTG 282 (464)
T ss_pred CCch------hheeccCCCCcceeccCC-ccceeEEccCCceeEeecCCCcch-hhhhhhccceEEEEEEcCCCCeeEEc
Confidence 7765 557799999999999999 778999999999999999999998 8899999999999999965 999999
Q ss_pred cCCCcEEEEEecCCC
Q psy2113 161 GQDNSVRVFKTKHQP 175 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~ 175 (183)
+.|..++++|+++.+
T Consensus 283 skD~~~kv~DiR~mk 297 (464)
T KOG0284|consen 283 SKDQSCKVFDIRTMK 297 (464)
T ss_pred cCCceEEEEehhHhH
Confidence 999999999999544
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=152.37 Aligned_cols=164 Identities=25% Similarity=0.417 Sum_probs=133.2
Q ss_pred eEEEEEeecC--cEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCC
Q psy2113 10 TLGVIFMTVG--ALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 10 ~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~ 82 (183)
..+++|++.. .++..+. +.+|++...........+...+.+|.+.|..++|++- +.|.+++.|+.+.|||.|+
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~ 259 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRS 259 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCC
Confidence 3456666644 3344333 6677766554444445677888999999999999964 4589999999999999996
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEe
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSG 160 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~ 160 (183)
+.. .+.....+|.+.|+|++|+|.++.+|+||+.|++|.+||+|+...+...+.+|...|.+|.|+|+ ..|+++
T Consensus 260 ~~~----~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASS 335 (422)
T KOG0264|consen 260 NTS----KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASS 335 (422)
T ss_pred CCC----CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEec
Confidence 311 12456778999999999999889999999999999999999998889999999999999999986 899999
Q ss_pred cCCCcEEEEEecCCCCC
Q psy2113 161 GQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~~~ 177 (183)
+.|+.+.+||+..-...
T Consensus 336 g~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 336 GTDRRLNVWDLSRIGEE 352 (422)
T ss_pred ccCCcEEEEeccccccc
Confidence 99999999999875444
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-23 Score=155.62 Aligned_cols=162 Identities=19% Similarity=0.318 Sum_probs=128.0
Q ss_pred ceeEEEEEee-cCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEEEEc
Q psy2113 8 ILTLGVIFMT-VGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKIWDA 80 (183)
Q Consensus 8 ~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vwd~ 80 (183)
..+.+++|+| ++..++++. +++|+++..........++..+.+|...|.+++|+|.+ .|++++.|+.|++||+
T Consensus 76 ~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl 155 (493)
T PTZ00421 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDV 155 (493)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEEC
Confidence 3578899999 777777654 88888764321122235677899999999999999863 5899999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCc-EEEEEecCC-cEEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK-VMCVNWSDY-RYIM 158 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-v~~~~~~~~-~~l~ 158 (183)
+++.. ...+.+|...|.+++|+| ++.++++++.|+.|++||+++++. +..+.+|.+. +..+.|.++ ..++
T Consensus 156 ~tg~~------~~~l~~h~~~V~sla~sp-dG~lLatgs~Dg~IrIwD~rsg~~-v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 156 ERGKA------VEVIKCHSDQITSLEWNL-DGSLLCTTSKDKKLNIIDPRDGTI-VSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred CCCeE------EEEEcCCCCceEEEEEEC-CCCEEEEecCCCEEEEEECCCCcE-EEEEecCCCCcceEEEEcCCCCeEE
Confidence 87654 556788999999999999 889999999999999999999876 6777788764 456778854 5666
Q ss_pred Eec----CCCcEEEEEecCCCCC
Q psy2113 159 SGG----QDNSVRVFKTKHQPKS 177 (183)
Q Consensus 159 ~~~----~dg~i~iwd~~~~~~~ 177 (183)
+++ .|+.|++||+++....
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p 250 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASP 250 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCc
Confidence 543 4899999999876543
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=162.54 Aligned_cols=163 Identities=23% Similarity=0.402 Sum_probs=135.7
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCc------------------------------------c---------
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPS------------------------------------F--------- 35 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------------------------------------~--------- 35 (183)
.+-....++-|+++|+++|.++ +++|.+.. .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4455677889999999999977 88887655 0
Q ss_pred --------cccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEE
Q psy2113 36 --------FQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRW 107 (183)
Q Consensus 36 --------~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 107 (183)
.......++++.+.||.+.|..|.|+.++.|+++++|.+|++|++....+ +. ...|...|+|++|
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~C------L~-~F~HndfVTcVaF 417 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKEC------LK-VFSHNDFVTCVAF 417 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcce------ee-EEecCCeeEEEEe
Confidence 00011235788899999999999999999999999999999999987775 44 4469999999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 108 ~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+|.+.+++++|+-||++++|++...+ +.....-..-|++++|.|+ +..+.|+.+|.+++|+.+..+.
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~ 485 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKL 485 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeE
Confidence 99999999999999999999999876 4555555689999999965 8999999999999999876543
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-25 Score=153.89 Aligned_cols=160 Identities=24% Similarity=0.409 Sum_probs=133.0
Q ss_pred CccceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEE
Q psy2113 2 STNKFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLK 76 (183)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~ 76 (183)
+.||--..+..+.|.|+|+.+.++. ..+|+...+ .....++.|..+|+++.|++++. +++|..+|.|+
T Consensus 91 s~NKvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iK 163 (464)
T KOG0284|consen 91 SSNKVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-------NFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIK 163 (464)
T ss_pred cccccccceeeEEEcCCCceeEeecccccEEEecCcee-------eHHHHhhhhcccceeEEEccCCCEEEEcCCCceEE
Confidence 4567777888999999998877765 667765322 22335678999999999997766 89999999999
Q ss_pred EEEcCCCCCccCceeEEEeecCC-cceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-
Q psy2113 77 IWDAELGGMKKGAIVKSTFSSHK-EWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY- 154 (183)
Q Consensus 77 vwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~- 154 (183)
+|+..-.. ...+..|. ..|.+++|+| ....+++++.||.|+|||....+. ...+.+|.-.|.+++|+|.
T Consensus 164 yWqpnmnn-------Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~ke-e~vL~GHgwdVksvdWHP~k 234 (464)
T KOG0284|consen 164 YWQPNMNN-------VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGHGWDVKSVDWHPTK 234 (464)
T ss_pred ecccchhh-------hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCch-hheeccCCCCcceeccCCcc
Confidence 99986554 33444454 8999999999 778999999999999999998876 6778999999999999987
Q ss_pred cEEEEecCCCcEEEEEecCCCCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
..+++++.|..|++||.+++...
T Consensus 235 gLiasgskDnlVKlWDprSg~cl 257 (464)
T KOG0284|consen 235 GLIASGSKDNLVKLWDPRSGSCL 257 (464)
T ss_pred ceeEEccCCceeEeecCCCcchh
Confidence 89999999999999999998754
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=149.87 Aligned_cols=160 Identities=26% Similarity=0.456 Sum_probs=132.6
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~ 83 (183)
.+.+++|+.+|.+++++. +++|+. .+..+.++..|+++|.++.|+..| .|++++.|+++.+||..++
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~--------~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNK--------DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEec--------CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCc
Confidence 467899999999999987 666753 566678888999999999999655 5999999999999998654
Q ss_pred CCc-----------------------------------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 84 GMK-----------------------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 84 ~~~-----------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
... ....|..++.+|.++|.++.|+| .+.+|++++.|+++++|.
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~-tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP-TGSLLASCSDDGTLKIWS 387 (524)
T ss_pred eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC-CCceEEEecCCCeeEeee
Confidence 322 12334567788999999999999 899999999999999998
Q ss_pred CCCCCc--------------------------------------------------ceEEeccCCCcEEEEEecCC-cEE
Q psy2113 129 LRSPKV--------------------------------------------------PLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 129 ~~~~~~--------------------------------------------------~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
...... ++..+..|..+|++++|+|+ .++
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~yl 467 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYL 467 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEE
Confidence 654322 57778899999999999966 999
Q ss_pred EEecCCCcEEEEEecCCCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~~~ 177 (183)
++|+.||.|++|+.++++..
T Consensus 468 AsGs~dg~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 468 ASGSLDGCVHIWSTKTGKLV 487 (524)
T ss_pred EecCCCCeeEeccccchhee
Confidence 99999999999999887644
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-24 Score=139.99 Aligned_cols=155 Identities=30% Similarity=0.606 Sum_probs=128.4
Q ss_pred eEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCC
Q psy2113 10 TLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~ 82 (183)
..++++++......+.. +++|. ......++..++.|..+|.++.|++- ..++++|.|++|++|+...
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d------~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFD------LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEec------cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 35677777665444332 66665 33455688899999999999999954 3388889999999999876
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec--CCcEEEEe
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS--DYRYIMSG 160 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~ 160 (183)
++. +.++.+|...|....|+|..++++++++.|+++++||++.... -..+..|...+.++.|+ +...+++|
T Consensus 137 ~~S------v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk-~~~i~ah~~Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 137 PNS------VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK-FMSIEAHNSEILCCDWSKYNHNVLATG 209 (311)
T ss_pred Ccc------eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-eeEEEeccceeEeecccccCCcEEEec
Confidence 664 6789999999999999998899999999999999999997655 34488999999999999 45899999
Q ss_pred cCCCcEEEEEecCCCCC
Q psy2113 161 GQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~~~ 177 (183)
+.|+.|+.||+++.+.+
T Consensus 210 ~vd~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTP 226 (311)
T ss_pred CCCceEEEEehhhcccc
Confidence 99999999999987765
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=151.80 Aligned_cols=130 Identities=19% Similarity=0.308 Sum_probs=109.9
Q ss_pred EEEeccCCCeeEEEEcc-CC-eEEEEeCCCeEEEEEcCCCCCc-cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 46 ITLKGHKEAISAVQWTA-VD-EIITSSWDHTLKIWDAELGGMK-KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 46 ~~~~~h~~~v~~~~~~~-~~-~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
..+.+|.+.|.+++|+| ++ .|++|+.|++|++||+...... ....+...+.+|...|.+++|+|...++|++++.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 35789999999999998 54 5999999999999999764321 111235567899999999999995457999999999
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.|++||+++++. ...+.+|...|.+++|+++ .+|++++.|++|++||+++++.
T Consensus 149 tVrIWDl~tg~~-~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~ 202 (493)
T PTZ00421 149 VVNVWDVERGKA-VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTI 202 (493)
T ss_pred EEEEEECCCCeE-EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcE
Confidence 999999998875 6778899999999999965 8999999999999999998754
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-23 Score=142.74 Aligned_cols=165 Identities=42% Similarity=0.793 Sum_probs=137.9
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCccc------------------ccccCccceEEEeccCCCeeEEEEccCCeE
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFF------------------QLILQKTPLITLKGHKEAISAVQWTAVDEI 66 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~------------------~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l 66 (183)
.+.++...++|..++.+. +++|+.+.-. .......++.++.+|.++|.++.|++.+.+
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~ 274 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVI 274 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCce
Confidence 455667778888877755 8888833211 112234578899999999999999998889
Q ss_pred EEEeCCCeEEEEEcCCCCCc--------------------------------------cCceeEEEeecCCcceEEEEEe
Q psy2113 67 ITSSWDHTLKIWDAELGGMK--------------------------------------KGAIVKSTFSSHKEWVQSVRWS 108 (183)
Q Consensus 67 ~s~~~d~~v~vwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~~v~~~~~~ 108 (183)
++++.|.+|+.||+.++... ....+...+.+|.+.|.++.|+
T Consensus 275 yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws 354 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS 354 (423)
T ss_pred EeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecC
Confidence 99999999999999876543 2345566788999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecC
Q psy2113 109 PIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 109 p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~ 173 (183)
|.+..+|++|+.|+++++||+|..+.++..+.+|.+.|.++.|..+..+++|+.|.+|+|+.-..
T Consensus 355 p~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 355 PTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred CCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCCceEEeccCcceEEEecccc
Confidence 98889999999999999999999987799999999999999999999999999999999987543
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.5e-24 Score=155.65 Aligned_cols=154 Identities=19% Similarity=0.314 Sum_probs=132.2
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~ 83 (183)
.-+++.+|.-..+..+. +++|. -.......+++++|...|.+++|+|. +.+++++.|++|+||.+.+.
T Consensus 100 IR~iavHPt~P~vLtsSDDm~iKlW~------we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 100 IRSIAVHPTLPYVLTSSDDMTIKLWD------WENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred eeeeeecCCCCeEEecCCccEEEEee------ccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCC
Confidence 34677888877766654 67665 23456778899999999999999975 45999999999999999877
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCC--CEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDP--QLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
.+ ..++.+|...|+|+.+-+ .+ .++++|+.|.++++||..+..+ ++++.+|...|..+.|+|. ..+++|
T Consensus 174 ~~------nfTl~gHekGVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~C-V~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 174 HP------NFTLEGHEKGVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSC-VQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred CC------ceeeeccccCcceEEecc-CCCcceEEecCCCceEEEeecchHHH-HHHhhcccccceEEEecCCCcEEEEe
Confidence 65 568899999999999987 44 4999999999999999999888 9999999999999999998 999999
Q ss_pred cCCCcEEEEEecCCCCC
Q psy2113 161 GQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~~~ 177 (183)
+.||+++||+-.+.+..
T Consensus 246 sEDGTvriWhs~Ty~lE 262 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLE 262 (794)
T ss_pred cCCccEEEecCcceehh
Confidence 99999999998776543
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=138.00 Aligned_cols=159 Identities=24% Similarity=0.360 Sum_probs=131.6
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCc
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMK 86 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~ 86 (183)
.+.++.+++..+...... .|+-....+....+..++++.+|...|+...|+|. +.++++|.|+++++||++....
T Consensus 106 EV~Svdwn~~~r~~~lts--SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk- 182 (311)
T KOG0277|consen 106 EVYSVDWNTVRRRIFLTS--SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK- 182 (311)
T ss_pred heEEeccccccceeEEee--ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc-
Confidence 455666777555444332 23333333366778889999999999999999975 5699999999999999987643
Q ss_pred cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEecCCC
Q psy2113 87 KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDN 164 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg 164 (183)
...+..|...+.|+.|+..+.+.++||+.|+.|+.||+++.+.|+..+.+|.-.|..+.|+|. ..|++++.|-
T Consensus 183 -----~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 183 -----FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred -----eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccc
Confidence 234778999999999999889999999999999999999999889999999999999999986 8999999999
Q ss_pred cEEEEEecCCC
Q psy2113 165 SVRVFKTKHQP 175 (183)
Q Consensus 165 ~i~iwd~~~~~ 175 (183)
++||||...+.
T Consensus 258 T~riw~~~~~d 268 (311)
T KOG0277|consen 258 TVRIWDPERQD 268 (311)
T ss_pred eEEecccccch
Confidence 99999988554
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-22 Score=135.07 Aligned_cols=155 Identities=21% Similarity=0.369 Sum_probs=129.2
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
.-++||+|.|++++.+. ..+|.. .....+.+..+++|...|.+++|+++|. |++|++|+.|-||.+....
T Consensus 64 VRsvAwsp~g~~La~aSFD~t~~Iw~k-----~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd 138 (312)
T KOG0645|consen 64 VRSVAWSPHGRYLASASFDATVVIWKK-----EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD 138 (312)
T ss_pred eeeeeecCCCcEEEEeeccceEEEeec-----CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC
Confidence 45789999999999877 333432 2345677899999999999999997765 8999999999999987443
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC--cceEEeccCCCcEEEEEecC-CcEEEEec
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK--VPLFDMLGHEDKVMCVNWSD-YRYIMSGG 161 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~-~~~l~~~~ 161 (183)
.......+++|...|..+.|+| ...+|++++.|.+|++|+-..+. ..++.+.+|...|.+++|++ +..+++++
T Consensus 139 ---Efec~aVL~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~s 214 (312)
T KOG0645|consen 139 ---EFECIAVLQEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCS 214 (312)
T ss_pred ---cEEEEeeeccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEec
Confidence 2334567889999999999999 88899999999999999887322 33789999999999999997 58999999
Q ss_pred CCCcEEEEEecC
Q psy2113 162 QDNSVRVFKTKH 173 (183)
Q Consensus 162 ~dg~i~iwd~~~ 173 (183)
.|++++||-...
T Consensus 215 dD~tv~Iw~~~~ 226 (312)
T KOG0645|consen 215 DDGTVSIWRLYT 226 (312)
T ss_pred CCcceEeeeecc
Confidence 999999998553
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-23 Score=137.33 Aligned_cols=154 Identities=21% Similarity=0.305 Sum_probs=131.1
Q ss_pred eeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEcc-CC-eEEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-VD-EIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~~~d~~v~vwd~~~~ 83 (183)
......|..++.+++... .-+| +.++++.+..|.+|.+.|.+++++| ++ .+++|+.|+..++||++.+
T Consensus 147 ylScC~f~dD~~ilT~SGD~TCalW-------Die~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~ 219 (343)
T KOG0286|consen 147 YLSCCRFLDDNHILTGSGDMTCALW-------DIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG 219 (343)
T ss_pred eeEEEEEcCCCceEecCCCceEEEE-------EcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence 345567888888888755 5566 5668888999999999999999998 44 4999999999999999998
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc--CCCcEEEEEec-CCcEEEEe
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG--HEDKVMCVNWS-DYRYIMSG 160 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~-~~~~l~~~ 160 (183)
.. .+.+.+|...|++++|.| ++.-+++|+.|++.++||+|.... +..+.. -..+|++++|+ .+.+|++|
T Consensus 220 ~c------~qtF~ghesDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 220 QC------VQTFEGHESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred ce------eEeecccccccceEEEcc-CCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeEEEcccccEEEee
Confidence 77 789999999999999999 899999999999999999999775 444442 33588999999 66999999
Q ss_pred cCCCcEEEEEecCCCCC
Q psy2113 161 GQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~~~ 177 (183)
..|..+.+||.-.++..
T Consensus 292 y~d~~c~vWDtlk~e~v 308 (343)
T KOG0286|consen 292 YDDFTCNVWDTLKGERV 308 (343)
T ss_pred ecCCceeEeeccccceE
Confidence 99999999998776654
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=153.20 Aligned_cols=158 Identities=23% Similarity=0.405 Sum_probs=129.5
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKG 88 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~ 88 (183)
..+++|+..|.+++.+.-+.-.+... +-....-+...++|...+++++++|+|+ +++|+.||+|+|||...+-+
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVw--eWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC--- 384 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVW--EWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC--- 384 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEE--EeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE---
Confidence 45677889999999987443222221 2233445667789999999999999987 88999999999999988776
Q ss_pred ceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc----------------------------------
Q psy2113 89 AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV---------------------------------- 134 (183)
Q Consensus 89 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------------- 134 (183)
..++..|...|+.+.|+. .++.+++.+-||+|+.||+...+.
T Consensus 385 ---~vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~I 460 (893)
T KOG0291|consen 385 ---FVTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEI 460 (893)
T ss_pred ---EEEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEE
Confidence 778999999999999999 889999999999999999875443
Q ss_pred ---------ceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 135 ---------PLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 135 ---------~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.+..+.+|+++|.++.|+|. ..|++++.|.+|++||+=....
T Consensus 461 fvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~ 512 (893)
T KOG0291|consen 461 FVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG 512 (893)
T ss_pred EEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc
Confidence 34455699999999999965 8999999999999999866533
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-23 Score=140.84 Aligned_cols=156 Identities=26% Similarity=0.415 Sum_probs=135.0
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
...++.|-|-|..+.... ++.| +..++-.++++.+|.+.|..++.+.+|. +++|+.|.++++|-+.+.
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~W-------e~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~ 267 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAW-------ECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK 267 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEE-------ecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc
Confidence 345678889887776654 6666 5567888999999999999999998887 789999999999999988
Q ss_pred CCccCceeEEEeecCCcceEEEEEecC--------------CCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEE
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPI--------------DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCV 149 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~--------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 149 (183)
.+ ...++.|.-+|-|++|.|. .+.++.+++.|++|++||+.++.+ +.++.+|...|..+
T Consensus 268 ~~------k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-L~tL~ghdnwVr~~ 340 (406)
T KOG0295|consen 268 QC------KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-LFTLVGHDNWVRGV 340 (406)
T ss_pred hh------hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE-EEEEecccceeeee
Confidence 66 4578889999999999873 125899999999999999999988 89999999999999
Q ss_pred EecCC-cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 150 NWSDY-RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 150 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+|+|+ ++|+++.+|+++++||+++.+...
T Consensus 341 af~p~Gkyi~ScaDDktlrvwdl~~~~cmk 370 (406)
T KOG0295|consen 341 AFSPGGKYILSCADDKTLRVWDLKNLQCMK 370 (406)
T ss_pred EEcCCCeEEEEEecCCcEEEEEeccceeee
Confidence 99986 999999999999999999987654
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.6e-23 Score=151.80 Aligned_cols=161 Identities=22% Similarity=0.353 Sum_probs=134.1
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
....+++|+|||.+++++. +++| +...+-+..++..|+..|+.+.|+..++ +++.+.||+|+.||+..
T Consensus 351 ~~i~~l~YSpDgq~iaTG~eDgKVKvW-------n~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkR 423 (893)
T KOG0291|consen 351 DRITSLAYSPDGQLIATGAEDGKVKVW-------NTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKR 423 (893)
T ss_pred cceeeEEECCCCcEEEeccCCCcEEEE-------eccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecc
Confidence 4567899999999999877 8888 5667778999999999999999996655 89999999999999864
Q ss_pred CCCc--------------------------------------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeE
Q psy2113 83 GGMK--------------------------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 124 (183)
Q Consensus 83 ~~~~--------------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 124 (183)
...- ++..++..+.+|.++|.+++|+| .++.|++++.|.+|
T Consensus 424 YrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTV 502 (893)
T KOG0291|consen 424 YRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTV 502 (893)
T ss_pred cceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceE
Confidence 3211 33344556789999999999999 88999999999999
Q ss_pred EEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 125 KLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 125 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
++||+-.....+ ....+...+..+.|.|+ ..+++++.||.|.+||.+...+.
T Consensus 503 RiW~if~s~~~v-Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~ 555 (893)
T KOG0291|consen 503 RIWDIFSSSGTV-ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQV 555 (893)
T ss_pred EEEEeeccCcee-eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceee
Confidence 999998764423 33456778999999976 89999999999999998877655
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=157.21 Aligned_cols=154 Identities=21% Similarity=0.347 Sum_probs=137.1
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
-+-+++|+|...++.++- +..| +..-+..+..|..|.++|++++|+|.+. |++|+.|-+|+||+..+.
T Consensus 11 RvKglsFHP~rPwILtslHsG~IQlW-------DYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r 83 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHSGVIQLW-------DYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR 83 (1202)
T ss_pred cccceecCCCCCEEEEeecCceeeee-------hhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccc
Confidence 345899999999988754 6666 5567778889999999999999998766 889999999999999988
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQ 162 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~ 162 (183)
++ ..++.+|-..|..+.|++ .-..|+++|.|.+|++|+..+.++ +..+.+|...|.|..|+|. ..++++|-
T Consensus 84 rc------lftL~GHlDYVRt~~FHh-eyPWIlSASDDQTIrIWNwqsr~~-iavltGHnHYVMcAqFhptEDlIVSaSL 155 (1202)
T KOG0292|consen 84 RC------LFTLLGHLDYVRTVFFHH-EYPWILSASDDQTIRIWNWQSRKC-IAVLTGHNHYVMCAQFHPTEDLIVSASL 155 (1202)
T ss_pred ee------hhhhccccceeEEeeccC-CCceEEEccCCCeEEEEeccCCce-EEEEecCceEEEeeccCCccceEEEecc
Confidence 87 668889999999999999 888999999999999999999887 8999999999999999985 99999999
Q ss_pred CCcEEEEEecCCCCC
Q psy2113 163 DNSVRVFKTKHQPKS 177 (183)
Q Consensus 163 dg~i~iwd~~~~~~~ 177 (183)
|.+||+||+..-++.
T Consensus 156 DQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 156 DQTVRVWDISGLRKK 170 (1202)
T ss_pred cceEEEEeecchhcc
Confidence 999999998865544
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=152.77 Aligned_cols=160 Identities=26% Similarity=0.351 Sum_probs=128.8
Q ss_pred eEEEEEeecCcEE-EEEE----eccCCCCcccc--cccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 10 TLGVIFMTVGALL-TLTN----IEVTSLPSFFQ--LILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 10 ~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
..+++++.-+.-+ +... +++|.++.-.. +........+...|...|++++.+|++. +++||.|++.+||+++
T Consensus 414 vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le 493 (775)
T KOG0319|consen 414 VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE 493 (775)
T ss_pred cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc
Confidence 3455555555433 2222 88898876211 1111122234467999999999998876 7899999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEe
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSG 160 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 160 (183)
+... ...+.+|...|.|+.|+| ..+.++|+|.|++|++|.+.+..+ ..++.+|...|..+.|- ++..|+++
T Consensus 494 ~~~l------~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSC-lkT~eGH~~aVlra~F~~~~~qliS~ 565 (775)
T KOG0319|consen 494 QLRL------LGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSC-LKTFEGHTSAVLRASFIRNGKQLISA 565 (775)
T ss_pred CceE------EEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEecccee-eeeecCccceeEeeeeeeCCcEEEec
Confidence 6554 778999999999999999 778999999999999999999998 89999999999999998 56999999
Q ss_pred cCCCcEEEEEecCCCCC
Q psy2113 161 GQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~~~ 177 (183)
+.||.|++|++++....
T Consensus 566 ~adGliKlWnikt~eC~ 582 (775)
T KOG0319|consen 566 GADGLIKLWNIKTNECE 582 (775)
T ss_pred cCCCcEEEEeccchhhh
Confidence 99999999999987654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-21 Score=146.60 Aligned_cols=161 Identities=20% Similarity=0.335 Sum_probs=121.7
Q ss_pred eceeEEEEEeec-CcEEEEEE----eccCCCCccccc-ccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEE
Q psy2113 7 GILTLGVIFMTV-GALLTLTN----IEVTSLPSFFQL-ILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIW 78 (183)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vw 78 (183)
...+.+++|+|+ +.+++++. +++|+++..... .....++..+.+|...|.+++|+|++. +++++.|+.|++|
T Consensus 74 ~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIW 153 (568)
T PTZ00420 74 TSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIW 153 (568)
T ss_pred CCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEE
Confidence 446788999997 67777655 888887642110 111235567889999999999999764 5789999999999
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEE-----EecC
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCV-----NWSD 153 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-----~~~~ 153 (183)
|+++... ...+. |...|.+++|+| ++.+|++++.|+.|++||++++.. +..+.+|.+.+... .|++
T Consensus 154 Dl~tg~~------~~~i~-~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~-i~tl~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 154 DIENEKR------AFQIN-MPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEI-ASSFHIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred ECCCCcE------EEEEe-cCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcE-EEEEecccCCceeEEEEeeeEcC
Confidence 9987653 33343 567899999999 899999999999999999999876 67788898765433 2343
Q ss_pred -CcEEEEecCCC----cEEEEEecCCCC
Q psy2113 154 -YRYIMSGGQDN----SVRVFKTKHQPK 176 (183)
Q Consensus 154 -~~~l~~~~~dg----~i~iwd~~~~~~ 176 (183)
+.+|++++.|+ +|++||++....
T Consensus 225 d~~~IlTtG~d~~~~R~VkLWDlr~~~~ 252 (568)
T PTZ00420 225 DDNYILSTGFSKNNMREMKLWDLKNTTS 252 (568)
T ss_pred CCCEEEEEEcCCCCccEEEEEECCCCCC
Confidence 37888877764 799999996443
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=131.16 Aligned_cols=156 Identities=22% Similarity=0.381 Sum_probs=135.6
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC-CeEEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~ 82 (183)
..+.++.|+-+|.+..+.. +++| +...+..+.+..+|...|..++.+.+ .+|++|+.|+.+.+||+.+
T Consensus 18 gaV~avryN~dGnY~ltcGsdrtvrLW-------Np~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~T 90 (307)
T KOG0316|consen 18 GAVRAVRYNVDGNYCLTCGSDRTVRLW-------NPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNT 90 (307)
T ss_pred cceEEEEEccCCCEEEEcCCCceEEee-------cccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEccc
Confidence 3567788999998876654 7788 55678889999999999999999855 5699999999999999999
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC-cceEEeccCCCcEEEEEecCCcEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDMLGHEDKVMCVNWSDYRYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 161 (183)
++. .+.+.+|.+.|+.++|+. +...+++|+.|.++++||.+... .|++.+....+.|.++.... ..|++|+
T Consensus 91 Gkv------~Rr~rgH~aqVNtV~fNe-esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~-heIvaGS 162 (307)
T KOG0316|consen 91 GKV------DRRFRGHLAQVNTVRFNE-ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE-HEIVAGS 162 (307)
T ss_pred Cee------eeecccccceeeEEEecC-cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc-cEEEeec
Confidence 987 778999999999999999 88899999999999999999764 45788888889999998876 6789999
Q ss_pred CCCcEEEEEecCCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~~ 178 (183)
.||++|.||++.+....
T Consensus 163 ~DGtvRtydiR~G~l~s 179 (307)
T KOG0316|consen 163 VDGTVRTYDIRKGTLSS 179 (307)
T ss_pred cCCcEEEEEeecceeeh
Confidence 99999999999887554
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=135.77 Aligned_cols=158 Identities=25% Similarity=0.363 Sum_probs=128.9
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
........+.|+|+|..++.+. +-+|++. ...+....+++|.+.|..+.|.+++. +++++.|.+++.||
T Consensus 45 gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~------gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 45 GHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVY------GDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred CCcceEEEEEECCCCCeEeecCCcceEEEEecc------ccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 4456788899999999999877 5556533 34455677889999999999997755 99999999999999
Q ss_pred cCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEE
Q psy2113 80 AELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIM 158 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~ 158 (183)
.++++. ....++|..-|+.+.-+.-+..++.+++.|+++++||+|+... +..+ ...-.++++.|.+. ..+.
T Consensus 119 ~~tG~~------~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~-~~kyqltAv~f~d~s~qv~ 190 (338)
T KOG0265|consen 119 AETGKR------IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTF-ENKYQLTAVGFKDTSDQVI 190 (338)
T ss_pred ccccee------eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhcc-ccceeEEEEEeccccccee
Confidence 999887 6678889999999885553567889999999999999998764 3333 33557899999955 8999
Q ss_pred EecCCCcEEEEEecCCCC
Q psy2113 159 SGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~~ 176 (183)
+|+-|+.|++||++..+.
T Consensus 191 sggIdn~ikvWd~r~~d~ 208 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDG 208 (338)
T ss_pred eccccCceeeeccccCcc
Confidence 999999999999987654
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-21 Score=147.67 Aligned_cols=135 Identities=21% Similarity=0.457 Sum_probs=107.7
Q ss_pred CccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCc--cCceeEEEeecCCcceEEEEEecCCCCEEE
Q psy2113 41 QKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMK--KGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 116 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 116 (183)
...++..+.+|.+.|.+++|+|. ..|++|+.|++|++||+.+.... ....+...+.+|...|.+++|+|....+++
T Consensus 63 r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLa 142 (568)
T PTZ00420 63 RKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMC 142 (568)
T ss_pred CCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEE
Confidence 34567889999999999999985 45899999999999999764321 111123457789999999999994444568
Q ss_pred EEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 117 SASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+++.|+.|++||+++++. ...+. |...|.+++|+++ .+|++++.|+.|+|||+++++..
T Consensus 143 SgS~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i 202 (568)
T PTZ00420 143 SSGFDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA 202 (568)
T ss_pred EEeCCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE
Confidence 999999999999998875 44443 5678999999965 88899999999999999987643
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=130.46 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=117.6
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEE
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 117 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 117 (183)
...++....+++...+.|+.+...|++.++++.....||+||+++.+..+ ...+.+|...|+.+.|.. +++.+++
T Consensus 26 qa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~P----v~t~e~h~kNVtaVgF~~-dgrWMyT 100 (311)
T KOG0315|consen 26 QALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNP----VATFEGHTKNVTAVGFQC-DGRWMYT 100 (311)
T ss_pred ehhcCeEEEEEecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCc----eeEEeccCCceEEEEEee-cCeEEEe
Confidence 55688889999877889999999999997777778899999999877643 778999999999999999 8999999
Q ss_pred EeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 118 ASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 118 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
|+.||++++||+|... ......|.++|+++..+|+ ..|++|..+|.|++||++.....
T Consensus 101 gseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 101 GSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred cCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 9999999999999965 4666678899999999987 89999999999999999987443
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-22 Score=130.98 Aligned_cols=156 Identities=24% Similarity=0.400 Sum_probs=126.9
Q ss_pred ceeEEEEEeec-CcEEEEEE----eccCCCCcccccccCccceEEE-eccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 8 ILTLGVIFMTV-GALLTLTN----IEVTSLPSFFQLILQKTPLITL-KGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
--+..++++|. |..++.+. +++|+.... ........+ .+|+..|++++|+|.++ |+++|.|.++.||.-
T Consensus 15 ~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~----~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k 90 (312)
T KOG0645|consen 15 DRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG----DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK 90 (312)
T ss_pred CcEEEEEeccCCceEEEeecCCceEEEEecCCC----CcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence 35778999998 78777765 777765421 112222222 47999999999999887 889999999999986
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC--cceEEeccCCCcEEEEEecCC-cEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK--VPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
..+. ......+.+|...|.|++|++ ++++|++++.|..|.+|.+..+. .....++.|...|..+.|+|. .+|
T Consensus 91 ~~~e----fecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL 165 (312)
T KOG0645|consen 91 EDGE----FECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLL 165 (312)
T ss_pred CCCc----eeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCccee
Confidence 6443 334778899999999999999 99999999999999999998543 236788999999999999987 899
Q ss_pred EEecCCCcEEEEEec
Q psy2113 158 MSGGQDNSVRVFKTK 172 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~ 172 (183)
++++.|.+|++|.-.
T Consensus 166 ~S~SYDnTIk~~~~~ 180 (312)
T KOG0645|consen 166 FSCSYDNTIKVYRDE 180 (312)
T ss_pred EEeccCCeEEEEeec
Confidence 999999999999866
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=148.65 Aligned_cols=152 Identities=23% Similarity=0.345 Sum_probs=135.6
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
-...+++++|...+++++. .++|.++ +...+..+.+|...|.++.|++.++ ++++|.|++|+||.+.+
T Consensus 464 KdIN~Vaia~ndkLiAT~SqDktaKiW~le-------~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~ 536 (775)
T KOG0319|consen 464 KDINCVAIAPNDKLIATGSQDKTAKIWDLE-------QLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIST 536 (775)
T ss_pred ccccceEecCCCceEEecccccceeeeccc-------CceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecc
Confidence 3457888999999999987 7778654 6677889999999999999998765 89999999999999998
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
..+ ..++.+|...|..+.|-. ++.+|++++.||.+++|++.+..+ ...+..|++.|+.+.-++. ..+++|+
T Consensus 537 fSC------lkT~eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt~eC-~~tlD~H~DrvWaL~~~~~~~~~~tgg 608 (775)
T KOG0319|consen 537 FSC------LKTFEGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNEC-EMTLDAHNDRVWALSVSPLLDMFVTGG 608 (775)
T ss_pred cee------eeeecCccceeEeeeeee-CCcEEEeccCCCcEEEEeccchhh-hhhhhhccceeEEEeecCccceeEecC
Confidence 887 779999999999999999 888999999999999999999988 8899999999999999965 8999999
Q ss_pred CCCcEEEEEecCC
Q psy2113 162 QDNSVRVFKTKHQ 174 (183)
Q Consensus 162 ~dg~i~iwd~~~~ 174 (183)
.||.|.+|.=.+.
T Consensus 609 ~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 609 GDGRIIFWKDVTE 621 (775)
T ss_pred CCeEEEEeecCcH
Confidence 9999999964443
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=151.96 Aligned_cols=111 Identities=27% Similarity=0.432 Sum_probs=99.6
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
...+-+++|+|.+.++..++ +++| +....+++.++.+|-+.|+.+.|++.-. ++++|.|.+|+||+..
T Consensus 51 dGpVRgv~FH~~qplFVSGGDDykIkVW-------nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwq 123 (1202)
T KOG0292|consen 51 DGPVRGVDFHPTQPLFVSGGDDYKIKVW-------NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQ 123 (1202)
T ss_pred CCccceeeecCCCCeEEecCCccEEEEE-------ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEecc
Confidence 45677999999999988766 8888 5567788999999999999999997654 9999999999999999
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS 131 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 131 (183)
+.++ +..+.+|...|.|.+|+| .+.+++++|-|.+|+|||+..
T Consensus 124 sr~~------iavltGHnHYVMcAqFhp-tEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 124 SRKC------IAVLTGHNHYVMCAQFHP-TEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred CCce------EEEEecCceEEEeeccCC-ccceEEEecccceEEEEeecc
Confidence 9887 788999999999999999 888999999999999999963
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=139.46 Aligned_cols=127 Identities=31% Similarity=0.475 Sum_probs=115.9
Q ss_pred cceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 43 TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
+....+.+|.+.|.|+++.|.+. |++|+.|+++.|||+.++++ ...+.+|-..|..+++++ ...++.+++.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~L------kltltGhi~~vr~vavS~-rHpYlFs~ged 214 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQL------KLTLTGHIETVRGVAVSK-RHPYLFSAGED 214 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeE------EEeecchhheeeeeeecc-cCceEEEecCC
Confidence 44566789999999999999877 89999999999999999886 678899999999999999 77799999999
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+.|+-||++..+. +..+.+|-+.|.+++.+|. ..|++|+.|.++++||+|+....
T Consensus 215 k~VKCwDLe~nkv-IR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V 270 (460)
T KOG0285|consen 215 KQVKCWDLEYNKV-IRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASV 270 (460)
T ss_pred CeeEEEechhhhh-HHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceE
Confidence 9999999999886 7888999999999999987 89999999999999999987643
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.7e-23 Score=141.46 Aligned_cols=160 Identities=25% Similarity=0.316 Sum_probs=130.0
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCccccc-ccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQL-ILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
..+..|+|+|.+++.+. +++|+....... ..+-+....+--+.++|.|+.|+.+.. +++|+.||+|++|.++++
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG 295 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG 295 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc
Confidence 34457999999999876 788865432110 011112234455788999999997655 899999999999999999
Q ss_pred CCccCceeEEEe-ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcEEEEec
Q psy2113 84 GMKKGAIVKSTF-SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYIMSGG 161 (183)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~ 161 (183)
.+ ++.+ +.|...|+|+.|+. ++..+++++.|.++++.-+..+++ +..+++|.+.|+...|.+ +.++++++
T Consensus 296 ~C------lRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 296 QC------LRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHIISAS 367 (508)
T ss_pred hH------HHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEEEec
Confidence 87 3444 48999999999999 888999999999999999999987 889999999999999995 59999999
Q ss_pred CCCcEEEEEecCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKS 177 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~ 177 (183)
.||+|++|+.++.+..
T Consensus 368 sDgtvkvW~~KtteC~ 383 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECL 383 (508)
T ss_pred CCccEEEecCcchhhh
Confidence 9999999998877543
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-22 Score=133.79 Aligned_cols=130 Identities=18% Similarity=0.310 Sum_probs=112.8
Q ss_pred CccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe
Q psy2113 41 QKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS 119 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 119 (183)
...++..+.+|.+.|+.+.|+|+|. |++|+.|..|.+|+....... ...+++|++.|..+.|.+ +++.+++++
T Consensus 36 l~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN-----~~~lkgHsgAVM~l~~~~-d~s~i~S~g 109 (338)
T KOG0265|consen 36 LQAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCEN-----FWVLKGHSGAVMELHGMR-DGSHILSCG 109 (338)
T ss_pred ccchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccc-----eeeeccccceeEeeeecc-CCCEEEEec
Confidence 3456677889999999999999876 899999999999997643321 567789999999999999 899999999
Q ss_pred CCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 120 FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 120 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
.|.+++.||++++++ ....++|..-|+.+... -+ ..+.+++.||++++||+|++...
T Consensus 110 tDk~v~~wD~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI 168 (338)
T ss_pred CCceEEEEeccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence 999999999999997 88999999999999866 33 67889999999999999966544
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-22 Score=149.49 Aligned_cols=141 Identities=27% Similarity=0.496 Sum_probs=121.0
Q ss_pred eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEE
Q psy2113 27 IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104 (183)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 104 (183)
+.+|++... ...+.+..|..|...++++.|++. +.|++||.||.|++||++.... ...+.+....|..
T Consensus 112 i~vWdlnk~----~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S------~~t~~~nSESiRD 181 (839)
T KOG0269|consen 112 ISVWDLNKS----IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS------KSTFRSNSESIRD 181 (839)
T ss_pred EEEEecCcc----ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc------cccccccchhhhc
Confidence 666765432 235566778899999999999954 5599999999999999998765 4566777888999
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 105 ~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+.|+|..++.++++...|.+.+||+|..+.+...+.+|.++|.++.|+|+ .+||+|+.|+.|+|||..+.+..
T Consensus 182 V~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~ 255 (839)
T KOG0269|consen 182 VKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK 255 (839)
T ss_pred eeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc
Confidence 99999778899999999999999999988778899999999999999987 89999999999999999876543
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=127.05 Aligned_cols=129 Identities=26% Similarity=0.404 Sum_probs=116.1
Q ss_pred CccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe
Q psy2113 41 QKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS 119 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 119 (183)
+.+....+..+.++|..+.|+-+| ..++|+.|++|++|+...+.+ ++++.+|...|..++.+. +...+++|+
T Consensus 6 ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~l------iktYsghG~EVlD~~~s~-Dnskf~s~G 78 (307)
T KOG0316|consen 6 PTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGAL------IKTYSGHGHEVLDAALSS-DNSKFASCG 78 (307)
T ss_pred cchhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccce------eeeecCCCceeeeccccc-cccccccCC
Confidence 345667889999999999999655 578999999999999887776 789999999999999998 778999999
Q ss_pred CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 120 FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 120 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
.|..+.+||+.+++. ...+.+|...|+.++|+++ ..+++|+.|.++++||.++....
T Consensus 79 gDk~v~vwDV~TGkv-~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 79 GDKAVQVWDVNTGKV-DRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE 136 (307)
T ss_pred CCceEEEEEcccCee-eeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC
Confidence 999999999999997 8899999999999999966 89999999999999999987654
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.5e-21 Score=130.82 Aligned_cols=159 Identities=18% Similarity=0.304 Sum_probs=133.8
Q ss_pred cceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEE
Q psy2113 4 NKFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW 78 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vw 78 (183)
.+....+.+++.+|+..+++++. -.+| ...++.....+.+|+++|.++.|+.++. |++|..+|.|+||
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW-------~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLW-------DISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVF 133 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEE-------EccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEE
Confidence 35566788999999888888876 3344 4556678889999999999999997765 8899999999999
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
+..++.. ...+...-..+.=+.|+| ....++.|+.||.+.+|.+..... ...+.+|..++++-.|.|+ +.+
T Consensus 134 ~~stg~~------~~~~~~e~~dieWl~WHp-~a~illAG~~DGsvWmw~ip~~~~-~kv~~Gh~~~ct~G~f~pdGKr~ 205 (399)
T KOG0296|consen 134 KVSTGGE------QWKLDQEVEDIEWLKWHP-RAHILLAGSTDGSVWMWQIPSQAL-CKVMSGHNSPCTCGEFIPDGKRI 205 (399)
T ss_pred EcccCce------EEEeecccCceEEEEecc-cccEEEeecCCCcEEEEECCCcce-eeEecCCCCCcccccccCCCceE
Confidence 9988775 444444455677788999 899999999999999999998654 7889999999999999965 999
Q ss_pred EEecCCCcEEEEEecCCCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~~~ 177 (183)
+++..||+|++||+.++...
T Consensus 206 ~tgy~dgti~~Wn~ktg~p~ 225 (399)
T KOG0296|consen 206 LTGYDDGTIIVWNPKTGQPL 225 (399)
T ss_pred EEEecCceEEEEecCCCcee
Confidence 99999999999999998654
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.2e-21 Score=134.62 Aligned_cols=170 Identities=22% Similarity=0.473 Sum_probs=127.5
Q ss_pred ceeceeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEcc--CCeEEEEeCCCeEEEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA--VDEIITSSWDHTLKIWD 79 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~~~d~~v~vwd 79 (183)
.+|-..+...|+-.|+.-.-.. +....-+.........+++.++.+|...=+.|+|+| .|.|++|..-+.|++|.
T Consensus 161 ~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~ 240 (440)
T KOG0302|consen 161 RLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWE 240 (440)
T ss_pred ccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeee
Confidence 4444445555665554322211 222222222223356788999999999999999997 47799999999999999
Q ss_pred cCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC-cceEEeccCCCcEEEEEecCC-cEE
Q psy2113 80 AELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
..++...... ..+.+|...|-.++|+|.....|++|+.||+|++||+|.+. ........|.+.|+.+.|+.. .+|
T Consensus 241 ~~~g~W~vd~---~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lL 317 (440)
T KOG0302|consen 241 PSTGSWKVDQ---RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLL 317 (440)
T ss_pred eccCceeecC---ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCccee
Confidence 9886553222 23567999999999999878899999999999999999873 234455899999999999955 789
Q ss_pred EEecCCCcEEEEEecCCCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~~~ 177 (183)
++|+.||+++|||+|+-+..
T Consensus 318 asG~DdGt~~iwDLR~~~~~ 337 (440)
T KOG0302|consen 318 ASGGDDGTLSIWDLRQFKSG 337 (440)
T ss_pred eecCCCceEEEEEhhhccCC
Confidence 99999999999999986543
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=141.34 Aligned_cols=133 Identities=32% Similarity=0.548 Sum_probs=119.2
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEE
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 116 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 116 (183)
+..+.+.+..|++|.+.|++++.+|... ++++|.|-+|++||.+. ...+.+.+.+|...|.+++|+|.+.+.++
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~-----~wa~~qtfeGH~HyVMqv~fnPkD~ntFa 157 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN-----EWACEQTFEGHEHYVMQVAFNPKDPNTFA 157 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC-----ceeeeeEEcCcceEEEEEEecCCCcccee
Confidence 5668888999999999999999999865 88999999999999864 23347789999999999999999999999
Q ss_pred EEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC---cEEEEecCCCcEEEEEecCCCC
Q psy2113 117 SASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY---RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+++-|++|+||.+....+ ..++.+|...|++++|-++ .+|++|+.|.+|+|||..+...
T Consensus 158 S~sLDrTVKVWslgs~~~-nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C 219 (794)
T KOG0276|consen 158 SASLDRTVKVWSLGSPHP-NFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC 219 (794)
T ss_pred eeeccccEEEEEcCCCCC-ceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH
Confidence 999999999999998775 8899999999999999854 6999999999999999887643
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-20 Score=147.94 Aligned_cols=151 Identities=21% Similarity=0.390 Sum_probs=122.3
Q ss_pred eEEEEEeec-CcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc-CC-eEEEEeCCCeEEEEEcCC
Q psy2113 10 TLGVIFMTV-GALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-VD-EIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 10 ~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~~~d~~v~vwd~~~ 82 (183)
..+++|++. +..++++. +++|++ ...+.+..+.+|.+.|++++|+| ++ .|++|+.|+.|++||+++
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~-------~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~ 607 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDV-------ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQ 607 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEEC-------CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCC
Confidence 346677764 55666554 667743 45567788899999999999996 44 589999999999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecC
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQ 162 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 162 (183)
... ...+.. ...+.++.|++.++.++++|+.||.|++||+++...+...+.+|...|.++.|.++..+++++.
T Consensus 608 ~~~------~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lvs~s~ 680 (793)
T PLN00181 608 GVS------IGTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLVSSST 680 (793)
T ss_pred CcE------EEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEEEEEC
Confidence 654 344443 4679999997657899999999999999999987655677889999999999998789999999
Q ss_pred CCcEEEEEecCC
Q psy2113 163 DNSVRVFKTKHQ 174 (183)
Q Consensus 163 dg~i~iwd~~~~ 174 (183)
|+.|++||++..
T Consensus 681 D~~ikiWd~~~~ 692 (793)
T PLN00181 681 DNTLKLWDLSMS 692 (793)
T ss_pred CCEEEEEeCCCC
Confidence 999999999754
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-21 Score=132.06 Aligned_cols=148 Identities=24% Similarity=0.484 Sum_probs=127.2
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC----------C------eEEEE
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV----------D------EIITS 69 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----------~------~l~s~ 69 (183)
.-.+..+.||.+++... +++|. ..++.....+..|..+|.+++|.|. + .+.++
T Consensus 238 vr~v~v~~DGti~As~s~dqtl~vW~-------~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 238 VRMVRVNQDGTIIASCSNDQTLRVWV-------VATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred EEEEEecCCeeEEEecCCCceEEEEE-------eccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 44567778888888766 77774 4455566778899999999999531 1 37899
Q ss_pred eCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEE
Q psy2113 70 SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCV 149 (183)
Q Consensus 70 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 149 (183)
+.|++|++||+.++.+ +.++.+|...|..++|+| .|++|+++..|+++++||+++.++ ...+..|+.-|+++
T Consensus 311 SrDktIk~wdv~tg~c------L~tL~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~c-mk~~~ah~hfvt~l 382 (406)
T KOG0295|consen 311 SRDKTIKIWDVSTGMC------LFTLVGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQC-MKTLEAHEHFVTSL 382 (406)
T ss_pred cccceEEEEeccCCeE------EEEEecccceeeeeEEcC-CCeEEEEEecCCcEEEEEecccee-eeccCCCcceeEEE
Confidence 9999999999999887 778999999999999999 999999999999999999999988 77788999999999
Q ss_pred EecCC-cEEEEecCCCcEEEEEec
Q psy2113 150 NWSDY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 150 ~~~~~-~~l~~~~~dg~i~iwd~~ 172 (183)
+|+.+ .++++|+-|.++++|..+
T Consensus 383 Dfh~~~p~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 383 DFHKTAPYVVTGSVDQTVKVWECR 406 (406)
T ss_pred ecCCCCceEEeccccceeeeeecC
Confidence 99955 899999999999999753
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-21 Score=132.36 Aligned_cols=165 Identities=27% Similarity=0.483 Sum_probs=136.4
Q ss_pred eeceeEEEEEeecCcEEEEEE----eccCC------CCccccc---------------------------ccCccceEEE
Q psy2113 6 FGILTLGVIFMTVGALLTLTN----IEVTS------LPSFFQL---------------------------ILQKTPLITL 48 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~------~~~~~~~---------------------------~~~~~~~~~~ 48 (183)
....+.++.|++++.++.++. -++|. .|....+ ..-..++..+
T Consensus 189 H~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~l 268 (481)
T KOG0300|consen 189 HTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRL 268 (481)
T ss_pred cccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeee
Confidence 344678899999998887754 34444 4431000 0112368889
Q ss_pred eccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEE
Q psy2113 49 KGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 127 (183)
Q Consensus 49 ~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vw 127 (183)
.+|.+.|.+..|..++ ++++++.|.+..+||++++.. ...+.+|....+.++-+| ..+++++.+.|-++++|
T Consensus 269 tgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~------v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLW 341 (481)
T KOG0300|consen 269 TGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEV------VNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLW 341 (481)
T ss_pred eccccceEehhhhcCcceeeeeeccccceeeeeccCce------eccccCcchhccccccCC-cceEEEEeccCceeEec
Confidence 9999999999999655 599999999999999999886 678899999999999999 88999999999999999
Q ss_pred eCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 128 DLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 128 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
|++..-..+..+++|.+.|+++.|..+..+++|+.|.+|++||+++++.+
T Consensus 342 DFReaI~sV~VFQGHtdtVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsp 391 (481)
T KOG0300|consen 342 DFREAIQSVAVFQGHTDTVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSP 391 (481)
T ss_pred cchhhcceeeeecccccceeEEEEecCCceeecCCCceEEEeeeccccCc
Confidence 99966555788999999999999998889999999999999999987654
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=136.87 Aligned_cols=158 Identities=26% Similarity=0.402 Sum_probs=129.0
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIW 78 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vw 78 (183)
+|.-.+.+..|..||+++++++ +++++ ......+..+.+|+.+|..+.|+|.+. +++|+.|+.+++|
T Consensus 66 rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD-------~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~ 138 (487)
T KOG0310|consen 66 RFKDVVYSVDFRSDGRLLAAGDESGHVKVFD-------MKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYW 138 (487)
T ss_pred hhccceeEEEeecCCeEEEccCCcCcEEEec-------cccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEE
Confidence 6777889999999999999988 45443 233445677889999999999997654 7889999999999
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
|+.+... ...+.+|...|.|.+++|..+.+++||+.||+|++||.+.... ......|..+|..+.+.|+ ..+
T Consensus 139 d~s~a~v------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~-~v~elnhg~pVe~vl~lpsgs~i 211 (487)
T KOG0310|consen 139 DLSTAYV------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTS-RVVELNHGCPVESVLALPSGSLI 211 (487)
T ss_pred EcCCcEE------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCc-eeEEecCCCceeeEEEcCCCCEE
Confidence 9987652 4468899999999999997778999999999999999998754 3444568899999999977 666
Q ss_pred EEecCCCcEEEEEecCCCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~~~ 177 (183)
++++ ...|++||+.++.+.
T Consensus 212 asAg-Gn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 212 ASAG-GNSVKVWDLTTGGQL 230 (487)
T ss_pred EEcC-CCeEEEEEecCCcee
Confidence 6665 468999999966543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.9e-20 Score=146.61 Aligned_cols=160 Identities=21% Similarity=0.414 Sum_probs=123.3
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCccccc-ccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEE
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQL-ILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWD 79 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd 79 (183)
...+.+++|+|++.+++++. +++|+....... .....+...+. +...|.+++|++. ..+++++.|+.|++||
T Consensus 483 ~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd 561 (793)
T PLN00181 483 SNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWD 561 (793)
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEE
Confidence 34577899999999888766 778875432111 01111233343 3568999999863 4599999999999999
Q ss_pred cCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-C-CcEE
Q psy2113 80 AELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-D-YRYI 157 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l 157 (183)
+.+.+. ...+.+|...|++++|+|.++.+|++|+.|+.|++||++++.. ...+.. ...+.++.|. + +.++
T Consensus 562 ~~~~~~------~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~-~~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 562 VARSQL------VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKT-KANICCVQFPSESGRSL 633 (793)
T ss_pred CCCCeE------EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEec-CCCeEEEEEeCCCCCEE
Confidence 987654 5677899999999999975788999999999999999998775 555554 4689999996 3 4899
Q ss_pred EEecCCCcEEEEEecCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~ 175 (183)
++|+.||.|++||+++.+
T Consensus 634 atgs~dg~I~iwD~~~~~ 651 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPK 651 (793)
T ss_pred EEEeCCCeEEEEECCCCC
Confidence 999999999999998765
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-21 Score=127.34 Aligned_cols=161 Identities=24% Similarity=0.313 Sum_probs=122.9
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEc-cCCeEEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWT-AVDEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~v~vwd~~~~ 83 (183)
.+-+++|+.+...+.++. ++++.+ .....+...+.+|.+.|..+.|+ .+..+++.+.|++||+||.+++
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdl------n~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg 175 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDL------NRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG 175 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhc------cCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccC
Confidence 456789999998877766 444432 33445567789999999999999 4566999999999999999987
Q ss_pred CCccCc----------------------------------eeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 84 GMKKGA----------------------------------IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 84 ~~~~~~----------------------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
...... .++.. ..-+..|.+.+++| +...+++|+.|..++.||.
T Consensus 176 t~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs-~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 176 TEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKS-YKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred cEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceee-ccCccccccccccC-CCceEEecCcceEEEEEec
Confidence 643100 00000 01234577888889 6689999999999999999
Q ss_pred CCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 130 RSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 130 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
.++........+|.++|.|+.|+|+ ...++|+.||+|++|....++..
T Consensus 254 ~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 254 NTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred cCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence 9998733335899999999999977 78899999999999998877655
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-20 Score=134.86 Aligned_cols=159 Identities=21% Similarity=0.355 Sum_probs=132.2
Q ss_pred ccceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEE
Q psy2113 3 TNKFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKI 77 (183)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~v 77 (183)
+.+.+....++|++|++..++++. +++|.+. .....+...+..|.++|++++|+|++. |++|...+++-+
T Consensus 439 ~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~-----g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~ 513 (603)
T KOG0318|consen 439 SIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLS-----GDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVL 513 (603)
T ss_pred eeccccccceEEEcCCCCEEEEecccceEEEEEec-----CCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEE
Confidence 345667788999999999999976 5555543 223344455667999999999999987 788889999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEE
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYI 157 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 157 (183)
||..+.+.. .....-|...|.|++|+| +..+++||+-|-.|.+|++..+...+....+|...|+.+.|.++..+
T Consensus 514 yd~~s~~~~-----~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~tv 587 (603)
T KOG0318|consen 514 YDVASREVK-----TNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDESTV 587 (603)
T ss_pred EEcccCcee-----cceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecCceE
Confidence 999887652 223445999999999999 88899999999999999999887667778899989999999999999
Q ss_pred EEecCCCcEEEEEec
Q psy2113 158 MSGGQDNSVRVFKTK 172 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~ 172 (183)
++.+.|..|++|++.
T Consensus 588 vSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 588 VSSGQDANIKVWNVT 602 (603)
T ss_pred EeccCcceeEEeccc
Confidence 999999999999874
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=132.07 Aligned_cols=150 Identities=24% Similarity=0.415 Sum_probs=128.5
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC----------eEEEEeCCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD----------EIITSSWDH 73 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------~l~s~~~d~ 73 (183)
-.+.++.|+|.+.+++... +++|.. .+......+.+|...|+.+.|+|.| .+++++.|+
T Consensus 360 g~V~alk~n~tg~LLaS~SdD~TlkiWs~-------~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~ds 432 (524)
T KOG0273|consen 360 GEVNALKWNPTGSLLASCSDDGTLKIWSM-------GQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDS 432 (524)
T ss_pred CceEEEEECCCCceEEEecCCCeeEeeec-------CCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCC
Confidence 3567899999999998865 888854 4555667889999999999999643 289999999
Q ss_pred eEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-
Q psy2113 74 TLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS- 152 (183)
Q Consensus 74 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~- 152 (183)
+|++||+..+.+ .+.+..|..+|.+++|+| +++++++|+.||.|.+|++++++. ++... -.+.|..++|+
T Consensus 433 tV~lwdv~~gv~------i~~f~kH~~pVysvafS~-~g~ylAsGs~dg~V~iws~~~~~l-~~s~~-~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 433 TVKLWDVESGVP------IHTLMKHQEPVYSVAFSP-NGRYLASGSLDGCVHIWSTKTGKL-VKSYQ-GTGGIFELCWNA 503 (524)
T ss_pred eEEEEEccCCce------eEeeccCCCceEEEEecC-CCcEEEecCCCCeeEeccccchhe-eEeec-CCCeEEEEEEcC
Confidence 999999998876 778889999999999999 999999999999999999999885 44444 45679999999
Q ss_pred CCcEEEEecCCCcEEEEEecC
Q psy2113 153 DYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 153 ~~~~l~~~~~dg~i~iwd~~~ 173 (183)
.+..+..+-.|+.+++.|++.
T Consensus 504 ~G~kl~~~~sd~~vcvldlr~ 524 (524)
T KOG0273|consen 504 AGDKLGACASDGSVCVLDLRK 524 (524)
T ss_pred CCCEEEEEecCCCceEEEecC
Confidence 668999999999999999873
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-22 Score=137.60 Aligned_cols=136 Identities=28% Similarity=0.497 Sum_probs=116.1
Q ss_pred eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEE
Q psy2113 27 IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVR 106 (183)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 106 (183)
+.+|.+.... .......+.||...|+.+.|.. ..+++++.|.++++|++.+... ...+.+|...|-|+.
T Consensus 299 iaVWdm~sps----~it~rrVLvGHrAaVNvVdfd~-kyIVsASgDRTikvW~~st~ef------vRtl~gHkRGIAClQ 367 (499)
T KOG0281|consen 299 IAVWDMASPT----DITLRRVLVGHRAAVNVVDFDD-KYIVSASGDRTIKVWSTSTCEF------VRTLNGHKRGIACLQ 367 (499)
T ss_pred eEEEeccCch----HHHHHHHHhhhhhheeeecccc-ceEEEecCCceEEEEeccceee------ehhhhcccccceehh
Confidence 6667654322 2233445679999999999964 4899999999999999998887 778999999999998
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 107 WSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 107 ~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+ .++++++|+.|.+|++||++.+.+ +..+.+|++-|.++.|.+ +.+++|..||+|++||+.....+.
T Consensus 368 Y---r~rlvVSGSSDntIRlwdi~~G~c-LRvLeGHEeLvRciRFd~-krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 368 Y---RDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRFDN-KRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred c---cCeEEEecCCCceEEEEeccccHH-HHHHhchHHhhhheeecC-ceeeeccccceEEEEecccccCCc
Confidence 8 678999999999999999999987 888999999999999976 689999999999999999876653
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-22 Score=141.04 Aligned_cols=154 Identities=23% Similarity=0.455 Sum_probs=128.3
Q ss_pred eEEEEEee-cCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 10 TLGVIFMT-VGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 10 ~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
+.++-|.| .+.++..+. +++|++. .....+.++.+|..+|..++|++++. |++++.|+.+++||.+++
T Consensus 217 vsai~~fp~~~hLlLS~gmD~~vklW~vy------~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG 290 (503)
T KOG0282|consen 217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVY------DDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG 290 (503)
T ss_pred cchhhhccceeeEEEecCCCceEEEEEEe------cCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccc
Confidence 34556777 666666554 6677643 36788999999999999999998876 999999999999999998
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQ 162 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~ 162 (183)
++ ...+. ....++|+.|+|++.+.+++|+.|+.|+.||+|+++. ++.+..|-+.|..+.|-++ .++++.+.
T Consensus 291 ~~------~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 291 QV------LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDEGRRFISSSD 362 (503)
T ss_pred eE------EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccCCceEeeecc
Confidence 86 33333 3556899999996668999999999999999999986 8888999999999999965 89999999
Q ss_pred CCcEEEEEecCCCCC
Q psy2113 163 DNSVRVFKTKHQPKS 177 (183)
Q Consensus 163 dg~i~iwd~~~~~~~ 177 (183)
|+.++||+.+.+-..
T Consensus 363 dks~riWe~~~~v~i 377 (503)
T KOG0282|consen 363 DKSVRIWENRIPVPI 377 (503)
T ss_pred CccEEEEEcCCCccc
Confidence 999999998776443
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-20 Score=140.89 Aligned_cols=154 Identities=26% Similarity=0.455 Sum_probs=135.0
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
.+.-..+++.+||++++++++- +++| ...+.+..-.+-||.=+|.|+..+|++. +++||.|..|++|-
T Consensus 506 el~ddvL~v~~Spdgk~LaVsLLdnTVkVy-------flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWG 578 (888)
T KOG0306|consen 506 ELEDDVLCVSVSPDGKLLAVSLLDNTVKVY-------FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWG 578 (888)
T ss_pred eccccEEEEEEcCCCcEEEEEeccCeEEEE-------EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEec
Confidence 4455678899999999999976 4444 3345566678899999999999998876 88999999999999
Q ss_pred cCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEE
Q psy2113 80 AELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIM 158 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~ 158 (183)
+.-+.+ ...+.+|...|.++.|.| ...++.+++.|+.|+-||-..-.+ ++.+.+|...|++++..|+ .+++
T Consensus 579 LdFGDC------HKS~fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~-iq~L~~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 579 LDFGDC------HKSFFAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEE-IQKLDGHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred cccchh------hhhhhcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhh-heeeccchheeeeeEEcCCCCeEE
Confidence 998887 457889999999999999 888999999999999999998876 8899999999999999976 8999
Q ss_pred EecCCCcEEEEEecC
Q psy2113 159 SGGQDNSVRVFKTKH 173 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~ 173 (183)
+++.|..|++|....
T Consensus 651 s~shD~sIRlwE~td 665 (888)
T KOG0306|consen 651 SSSHDKSIRLWERTD 665 (888)
T ss_pred eccCCceeEeeeccC
Confidence 999999999998665
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-21 Score=137.65 Aligned_cols=169 Identities=20% Similarity=0.340 Sum_probs=121.8
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcc-----cccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEE
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSF-----FQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKI 77 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~v 77 (183)
...++.|++.|..+.+.. .++++-.-+ ......-.-+..-++|...+++.+|+|.++ +++++.||++|+
T Consensus 216 ~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRi 295 (641)
T KOG0772|consen 216 QINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRI 295 (641)
T ss_pred ccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEE
Confidence 346788999887765533 333221111 111112233456689999999999998754 999999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC--cceEEeccCCC--cEEEEEec-
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK--VPLFDMLGHED--KVMCVNWS- 152 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~--~v~~~~~~- 152 (183)
||+...+.....+......+..-+++.++|+| ++..|++|+.||.|.+|+..... .......+|.. .|++|.|+
T Consensus 296 Wdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 296 WDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY 374 (641)
T ss_pred EecCCchhheeEEeeccCCCcccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence 99987553322222222234456789999999 88999999999999999986432 22345567877 89999999
Q ss_pred CCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 153 DYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 153 ~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
++++|++-+.|+++++||+++.++..
T Consensus 375 dg~~LlSRg~D~tLKvWDLrq~kkpL 400 (641)
T KOG0772|consen 375 DGNYLLSRGFDDTLKVWDLRQFKKPL 400 (641)
T ss_pred ccchhhhccCCCceeeeeccccccch
Confidence 55999999999999999999987653
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=133.00 Aligned_cols=138 Identities=28% Similarity=0.509 Sum_probs=116.8
Q ss_pred CccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCC-ccCceeEEEeecCCcceEEEEEecCCCCEEEE
Q psy2113 41 QKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGM-KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 117 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 117 (183)
...+-..+.+|...-++|+|++. +.|++++.|++|.+||+..... .+...+...+.+|...|..++|+|....++++
T Consensus 166 ~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 166 ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhhee
Confidence 44556689999998899999954 6699999999999999976544 23344566788999999999999988899999
Q ss_pred EeCCCeEEEEeCCC-CCcceEEeccCCCcEEEEEecC--CcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 118 ASFDNSVKLWDLRS-PKVPLFDMLGHEDKVMCVNWSD--YRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 118 ~~~dg~i~vwd~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
++.|+.+.+||.|+ ...+.....+|..+|+|++|+| +..||+|+.|++|++||+|+..++-
T Consensus 246 v~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~l 309 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPL 309 (422)
T ss_pred ecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCc
Confidence 99999999999995 3334677889999999999995 3789999999999999999987653
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.5e-21 Score=133.45 Aligned_cols=115 Identities=25% Similarity=0.464 Sum_probs=85.5
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKG 88 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~ 88 (183)
+.-+.|+++|+++|.+.-.-..+.-........+...++.+|..+|.-+.|+|+++ +++|+.+..+.+||..++..
T Consensus 227 VWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~--- 303 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL--- 303 (519)
T ss_pred EEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh---
Confidence 45578999999999876221111111112233566889999999999999999866 89999999999999998875
Q ss_pred ceeEEEe-ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q psy2113 89 AIVKSTF-SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS 131 (183)
Q Consensus 89 ~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 131 (183)
.+.+ .++...+.+++|.| ++..+++|+.|+.+..||...
T Consensus 304 ---~~~y~~~~~~S~~sc~W~p-Dg~~~V~Gs~dr~i~~wdlDg 343 (519)
T KOG0293|consen 304 ---RHLYPSGLGFSVSSCAWCP-DGFRFVTGSPDRTIIMWDLDG 343 (519)
T ss_pred ---hhhcccCcCCCcceeEEcc-CCceeEecCCCCcEEEecCCc
Confidence 2222 23457788889999 788888888888888887753
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-21 Score=130.68 Aligned_cols=165 Identities=15% Similarity=0.260 Sum_probs=126.2
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCccc---------c-cc-cCccceEEEeccCCCeeEEEEccCCe-EEEEe
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFF---------Q-LI-LQKTPLITLKGHKEAISAVQWTAVDE-IITSS 70 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---------~-~~-~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~ 70 (183)
...|-+-+|++||.+++++. +++.+++... . .. .....+.++-.|.++|+++.|+|... |++|+
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s 191 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS 191 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc
Confidence 34677789999999999876 6666555221 0 11 12246788999999999999998766 88999
Q ss_pred CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEE--eccCCCcEEE
Q psy2113 71 WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFD--MLGHEDKVMC 148 (183)
Q Consensus 71 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~v~~ 148 (183)
.|++|++||+......+.. .......+|.+++|+| .|.+++.|..-..+++||+++-++.+.. -..|.+.|++
T Consensus 192 rD~tvKlFDfsK~saKrA~----K~~qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~ 266 (430)
T KOG0640|consen 192 RDNTVKLFDFSKTSAKRAF----KVFQDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ 266 (430)
T ss_pred CCCeEEEEecccHHHHHHH----HHhhccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeE
Confidence 9999999998754332211 1112456799999999 8999999998899999999998763322 2468899999
Q ss_pred EEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 149 VNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 149 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+.+++. ...++++.||.|++||--+.+.
T Consensus 267 V~Ys~t~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 267 VRYSSTGSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred EEecCCccEEEEeccCCcEEeeccccHHH
Confidence 999965 8889999999999999665543
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.7e-21 Score=126.01 Aligned_cols=167 Identities=20% Similarity=0.279 Sum_probs=136.6
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIW 78 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vw 78 (183)
.+-..+.+++|+.+|..++.+. ..+|++... ....-....+|.+.|-.++|+|. +.+++++.|.+|++|
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~-----r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~w 92 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERD-----RFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIW 92 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecch-----hhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEE
Confidence 3445678999999999998876 555654322 22233456789999999999954 559999999999999
Q ss_pred EcCCCCCc------------------------------------------------------------------------
Q psy2113 79 DAELGGMK------------------------------------------------------------------------ 86 (183)
Q Consensus 79 d~~~~~~~------------------------------------------------------------------------ 86 (183)
|++..++.
T Consensus 93 d~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ 172 (313)
T KOG1407|consen 93 DIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVE 172 (313)
T ss_pred EeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEE
Confidence 99887654
Q ss_pred ----cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEec
Q psy2113 87 ----KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGG 161 (183)
Q Consensus 87 ----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~ 161 (183)
+...+...++.|+....|+.|+| +++++++|+.|-.+-+||+...-+ ...+..+.-+|..+.|+ ++++|++++
T Consensus 173 ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC-~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 173 ILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELIC-ERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred EEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhh-heeeccccCceEEEEeccCcceeeccC
Confidence 33445566788999999999999 999999999999999999998766 77888899999999999 779999999
Q ss_pred CCCcEEEEEecCCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~~ 178 (183)
.|..|-|=+++++.+..
T Consensus 251 EDh~IDIA~vetGd~~~ 267 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDRVW 267 (313)
T ss_pred ccceEEeEecccCCeEE
Confidence 99999998888887653
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=127.57 Aligned_cols=121 Identities=26% Similarity=0.503 Sum_probs=102.2
Q ss_pred cCCCeeEEEEccC-C-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 51 HKEAISAVQWTAV-D-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 51 h~~~v~~~~~~~~-~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
-.+.|.+|+|+|. . .++++|.|++||+|+++...... ......|.++|.+++|+. ++..+++|+.|+.+++||
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~----~ka~~~~~~PvL~v~Wsd-dgskVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV----PKAQQSHDGPVLDVCWSD-DGSKVFSGGCDKQAKLWD 100 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc----chhhhccCCCeEEEEEcc-CCceEEeeccCCceEEEE
Confidence 4678999999984 3 36689999999999998743211 134456999999999999 889999999999999999
Q ss_pred CCCCCcceEEeccCCCcEEEEEecCC---cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 129 LRSPKVPLFDMLGHEDKVMCVNWSDY---RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 129 ~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+.+++ +.....|..+|..+.|-++ ..|++|+.|.+|++||+|......
T Consensus 101 L~S~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~ 151 (347)
T KOG0647|consen 101 LASGQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVA 151 (347)
T ss_pred ccCCC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeee
Confidence 99986 6888999999999999854 589999999999999999776543
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.8e-20 Score=128.97 Aligned_cols=157 Identities=21% Similarity=0.319 Sum_probs=128.3
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
+...-+.++.|+|+...+..+. +++|..+. .........|.++|+.+..+|.|. |++++.|++..+.|
T Consensus 259 Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~-------~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd 331 (506)
T KOG0289|consen 259 GHTKKITSVKFHKDLDTVITASADEIIRVWSVPL-------SSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSD 331 (506)
T ss_pred CcceEEEEEEeccchhheeecCCcceEEeecccc-------ccCccccccccccceeeeeccCCcEEEEecCCceEEEEE
Confidence 3445678889999887776654 77887653 224456678999999999998765 89999999999999
Q ss_pred cCCCCCccCceeEEEeec--CCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cE
Q psy2113 80 AELGGMKKGAIVKSTFSS--HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RY 156 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 156 (183)
++++.. +..... ..-.+++.+|+| ++.++.+|..||.+++||+..+.. +..+.+|.++|..++|+++ -+
T Consensus 332 ~~~g~~------lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~-~a~Fpght~~vk~i~FsENGY~ 403 (506)
T KOG0289|consen 332 ISSGSQ------LTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTN-VAKFPGHTGPVKAISFSENGYW 403 (506)
T ss_pred ccCCcE------EEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCccc-cccCCCCCCceeEEEeccCceE
Confidence 998764 222222 234589999999 999999999999999999999886 8899999999999999955 78
Q ss_pred EEEecCCCcEEEEEecCCCC
Q psy2113 157 IMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~~~~ 176 (183)
+++++.|+.|++||+|..+.
T Consensus 404 Lat~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 404 LATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred EEEEecCCeEEEEEehhhcc
Confidence 89999999999999998653
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.8e-20 Score=141.00 Aligned_cols=165 Identities=24% Similarity=0.372 Sum_probs=138.3
Q ss_pred eceeEEEEEeecCcEEEEEE------eccCCCCcccc-----cccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCe
Q psy2113 7 GILTLGVIFMTVGALLTLTN------IEVTSLPSFFQ-----LILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHT 74 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~ 74 (183)
+-...++..+|++..+++++ +.+|+...+.+ +....+.+.++..|.+.|+|+.|+++|. |++|+.|+.
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~ 92 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRL 92 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcce
Confidence 34467899999999998877 33777665532 2234677889999999999999999887 899999999
Q ss_pred EEEEEcCCC------------CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccC
Q psy2113 75 LKIWDAELG------------GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGH 142 (183)
Q Consensus 75 v~vwd~~~~------------~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 142 (183)
|.||+.... ...........+.+|+..|..++|+| ++.++++++.|++|.+||.++.+. +..+.+|
T Consensus 93 v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~-~~vl~~H 170 (942)
T KOG0973|consen 93 VMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFEL-LKVLRGH 170 (942)
T ss_pred EEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEcccccee-eeeeecc
Confidence 999998730 11133455677889999999999999 899999999999999999999954 8899999
Q ss_pred CCcEEEEEecCC-cEEEEecCCCcEEEEEecC
Q psy2113 143 EDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 143 ~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 173 (183)
.+.|..+.|.|- ++|++-+.|++|+||++.+
T Consensus 171 ~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 171 QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD 202 (942)
T ss_pred cccccceEECCccCeeeeecCCceEEEEEccc
Confidence 999999999974 9999999999999999665
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.3e-19 Score=122.47 Aligned_cols=154 Identities=31% Similarity=0.467 Sum_probs=126.0
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~ 82 (183)
-.+.++.|+|++..++++. +.+|++ ........+..|...+..+.|++++ .+++++.++.+++||+..
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~ 82 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDL-------ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET 82 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEe-------eCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence 4567889999988888765 555533 3444667788899999999999877 689999999999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
.+. ...+..|...+.++.|+| ++.++++++.|+.+.+||+++.+. ...+..|...+.++.|+++ .++++++
T Consensus 83 ~~~------~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~ 154 (289)
T cd00200 83 GEC------VRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGTFVASSS 154 (289)
T ss_pred ccc------eEEEeccCCcEEEEEEcC-CCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcCCEEEEEc
Confidence 543 456778888999999999 677888888899999999997665 6677789999999999975 7777777
Q ss_pred CCCcEEEEEecCCCC
Q psy2113 162 QDNSVRVFKTKHQPK 176 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~ 176 (183)
.||.|++||++..+.
T Consensus 155 ~~~~i~i~d~~~~~~ 169 (289)
T cd00200 155 QDGTIKLWDLRTGKC 169 (289)
T ss_pred CCCcEEEEEcccccc
Confidence 799999999986554
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=130.45 Aligned_cols=163 Identities=18% Similarity=0.306 Sum_probs=130.9
Q ss_pred eeceeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCC
Q psy2113 6 FGILTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~ 83 (183)
|....-.+.|++++..+++..-.--++.... .-..+..+.++.+|...|++++|-|... +++|+.|+.|.+|+=..-
T Consensus 102 ~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F-~~DSG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPF 180 (603)
T KOG0318|consen 102 LAGPIKDISWDFDSKRIAAVGEGRERFGHVF-LWDSGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPF 180 (603)
T ss_pred cccccccceeCCCCcEEEEEecCccceeEEE-EecCCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCe
Confidence 4456678899999988776551111111100 2245667788999999999999998764 899999999999985433
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec---cCCCcEEEEEecCC-cEEEE
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML---GHEDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~v~~~~~~~~-~~l~~ 159 (183)
+ ....++.|...|.|+.|+| ++.++++.+.||++.+||-.+++. +..+. +|.+.|..+.|+|+ ..+++
T Consensus 181 K------Fk~s~r~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~~~T 252 (603)
T KOG0318|consen 181 K------FKSSFREHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQFLT 252 (603)
T ss_pred e------eeecccccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccE-EEEecCCCCccccEEEEEECCCCceEEE
Confidence 3 2556788999999999999 899999999999999999999987 66666 89999999999977 99999
Q ss_pred ecCCCcEEEEEecCCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~~ 177 (183)
++.|.+++|||+.+.+..
T Consensus 253 ~SaDkt~KIWdVs~~slv 270 (603)
T KOG0318|consen 253 VSADKTIKIWDVSTNSLV 270 (603)
T ss_pred ecCCceEEEEEeeccceE
Confidence 999999999999887543
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=121.18 Aligned_cols=159 Identities=21% Similarity=0.286 Sum_probs=132.0
Q ss_pred EEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc-CCeEEEEeCCCeEEEEEcCCCCC
Q psy2113 11 LGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~~ 85 (183)
.-+-|+.+|.++.... ..+| ...+++.+.++.+|.+.|.+++... ...+++|+.|.++++||+.+++.
T Consensus 14 TqiKyN~eGDLlFscaKD~~~~vw-------~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~ 86 (327)
T KOG0643|consen 14 TQIKYNREGDLLFSCAKDSTPTVW-------YSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQ 86 (327)
T ss_pred ceEEecCCCcEEEEecCCCCceEE-------EecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcE
Confidence 4567888998887765 4445 4557888999999999999999984 45699999999999999998765
Q ss_pred c-----------------------------------------------cCceeEEEeecCCcceEEEEEecCCCCEEEEE
Q psy2113 86 K-----------------------------------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118 (183)
Q Consensus 86 ~-----------------------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 118 (183)
. ....+...+..+...++..-|.| -+..|++|
T Consensus 87 la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~-l~~~ii~G 165 (327)
T KOG0643|consen 87 LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP-LGETIIAG 165 (327)
T ss_pred EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc-cCCEEEEe
Confidence 4 11223445556678899999999 88899999
Q ss_pred eCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 119 SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 119 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
..||.|..||.+++...+.....|...|+.+.++++ .++++++.|.+-++||.++-+..
T Consensus 166 he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~ 225 (327)
T KOG0643|consen 166 HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL 225 (327)
T ss_pred cCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE
Confidence 999999999999998767788899999999999976 89999999999999998876543
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-21 Score=136.95 Aligned_cols=128 Identities=26% Similarity=0.465 Sum_probs=110.9
Q ss_pred CccceEEEeccCCCeeEEEEcc-CCe-EEEEeCCCeEEEEEcCC-CCCccCceeEEEeecCCcceEEEEEecCCCCEEEE
Q psy2113 41 QKTPLITLKGHKEAISAVQWTA-VDE-IITSSWDHTLKIWDAEL-GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 117 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~-~~~-l~s~~~d~~v~vwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 117 (183)
..+.+.++.+|...|.++.|.| .+. |++++.|+.|+||++.. +.+ ++++.+|..+|..++|++ .+..+++
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~------lrtf~gH~k~Vrd~~~s~-~g~~fLS 275 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRC------LRTFKGHRKPVRDASFNN-CGTSFLS 275 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcce------ehhhhcchhhhhhhhccc-cCCeeee
Confidence 5567889999999999999998 455 88999999999999987 343 778999999999999999 8999999
Q ss_pred EeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCCCC
Q psy2113 118 ASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 118 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
++.|+.+++||++++++ +..+ .....++++.|.|+ +.+++|+.|+.|+.||+|+++..
T Consensus 276 ~sfD~~lKlwDtETG~~-~~~f-~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 276 ASFDRFLKLWDTETGQV-LSRF-HLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred eecceeeeeeccccceE-EEEE-ecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH
Confidence 99999999999999986 4443 33457799999965 78999999999999999998743
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-20 Score=135.13 Aligned_cols=157 Identities=23% Similarity=0.432 Sum_probs=132.6
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEec-cCCCeeEEEEccCCeEEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKG-HKEAISAVQWTAVDEIITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~ 81 (183)
.-...++.|+++|..++++. +.+| +....+.+..+.+ |...|-+++|+ ...+.+|+.++.|..+|++
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iw-------D~~~~k~~~~~~~~h~~rvg~laW~-~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIW-------DVKEQKKTRTLRGSHASRVGSLAWN-SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEE-------ehhhccccccccCCcCceeEEEecc-CceEEEecCCCcEEEEEEe
Confidence 34678899999999999987 6666 4455666677777 99999999998 5678999999999999999
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMS 159 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~ 159 (183)
..+... ..+.+|...|..++|++ ++.++++|+.|+.+.|||...... +..+..|...|..++|+|- ..||+
T Consensus 289 ~~~~~~-----~~~~~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p-~~~~~~H~aAVKA~awcP~q~~lLAs 361 (484)
T KOG0305|consen 289 ISQHVV-----STLQGHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEP-KFTFTEHTAAVKALAWCPWQSGLLAT 361 (484)
T ss_pred cchhhh-----hhhhcccceeeeeEECC-CCCeeccCCCccceEeccCCCccc-cEEEeccceeeeEeeeCCCccCceEE
Confidence 876532 23778999999999999 899999999999999999976654 8889999999999999975 78888
Q ss_pred ecC--CCcEEEEEecCCCCCC
Q psy2113 160 GGQ--DNSVRVFKTKHQPKSG 178 (183)
Q Consensus 160 ~~~--dg~i~iwd~~~~~~~~ 178 (183)
|+. |+.|++||..++....
T Consensus 362 GGGs~D~~i~fwn~~~g~~i~ 382 (484)
T KOG0305|consen 362 GGGSADRCIKFWNTNTGARID 382 (484)
T ss_pred cCCCcccEEEEEEcCCCcEec
Confidence 654 9999999999776543
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=141.82 Aligned_cols=128 Identities=23% Similarity=0.457 Sum_probs=105.0
Q ss_pred eEEEe-ccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCc------------------------------------
Q psy2113 45 LITLK-GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMK------------------------------------ 86 (183)
Q Consensus 45 ~~~~~-~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~------------------------------------ 86 (183)
.+.+. .|.+.|.++.|+++|+ ||+|+.|+.|+||.+...+..
T Consensus 259 ~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~ 338 (712)
T KOG0283|consen 259 VQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSS 338 (712)
T ss_pred eeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccc
Confidence 44556 8999999999999987 899999999999997650000
Q ss_pred ------------------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEE
Q psy2113 87 ------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMC 148 (183)
Q Consensus 87 ------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 148 (183)
-...+...+.+|.+.|..+.|+. .++|++.+.|.+|++|++....+ .....|.+.|+|
T Consensus 339 ~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~C--L~~F~HndfVTc 414 (712)
T KOG0283|consen 339 SRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKEC--LKVFSHNDFVTC 414 (712)
T ss_pred cccccCCccccCCCccccccccchhhhhccchhheeccccc--CCeeEeccccccEEeecCCCcce--eeEEecCCeeEE
Confidence 01223456778999999999997 45999999999999999997765 445579999999
Q ss_pred EEecC--CcEEEEecCCCcEEEEEecCCCC
Q psy2113 149 VNWSD--YRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 149 ~~~~~--~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|+|+| ++++++|+-||+||||++...+-
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~V 444 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKV 444 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCee
Confidence 99995 49999999999999999887653
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.6e-20 Score=123.48 Aligned_cols=112 Identities=22% Similarity=0.434 Sum_probs=85.9
Q ss_pred eEEEEEeecCcE-EEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 10 TLGVIFMTVGAL-LTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 10 ~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
..+++|+|.... ++++. ++.|.+..-. ...+ .....|.++|.+++|+.+|. .++|+.|+.+++||+.++
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g----~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~ 104 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQNSG----QLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG 104 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEecCC----cccc-hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence 457899995444 43433 7777664321 1111 34456899999999997765 889999999999999988
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCC--EEEEEeCCCeEEEEeCCCCCc
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQ--LFVSASFDNSVKLWDLRSPKV 134 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~~dg~i~vwd~~~~~~ 134 (183)
+ ...+..|.++|.++.|-+ ... .|+||+.|.+|++||.|....
T Consensus 105 Q-------~~~v~~Hd~pvkt~~wv~-~~~~~cl~TGSWDKTlKfWD~R~~~p 149 (347)
T KOG0647|consen 105 Q-------VSQVAAHDAPVKTCHWVP-GMNYQCLVTGSWDKTLKFWDTRSSNP 149 (347)
T ss_pred C-------eeeeeecccceeEEEEec-CCCcceeEecccccceeecccCCCCe
Confidence 6 557888999999999977 444 899999999999999996643
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=129.82 Aligned_cols=133 Identities=22% Similarity=0.447 Sum_probs=113.0
Q ss_pred EEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCccC-ceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 46 ITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMKKG-AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 46 ~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
-.+.+|.++|..++|+|- ..+++||.|.+|.||++..+..... ..+...+.+|...|.-++|+|...+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 356799999999999964 4599999999999999876544322 2346678899999999999997788999999999
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCCCCCc
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKSGQK 180 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 180 (183)
+|.+||+.+++. +..+. |.+-|+++.|+ ++.++++.+.|.+|||||.++++...+.
T Consensus 155 ~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~ 211 (472)
T KOG0303|consen 155 TVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG 211 (472)
T ss_pred eEEEEeccCCce-eeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec
Confidence 999999999986 33444 99999999999 6699999999999999999998766543
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=128.08 Aligned_cols=161 Identities=21% Similarity=0.301 Sum_probs=130.5
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC-
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL- 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~- 82 (183)
...+++-+|.|.++.++. +.+| ....+..+..+.+|-.+|+++.|+.++. |++||.||.|.+|.+..
T Consensus 83 ~v~al~s~n~G~~l~ag~i~g~lYlW-------elssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 83 PVHALASSNLGYFLLAGTISGNLYLW-------ELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ceeeeecCCCceEEEeecccCcEEEE-------EeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEee
Confidence 367888999999999884 5566 5567888888899999999999997765 99999999999999743
Q ss_pred --CCCccCceeEEEeecCCcceEEEEEecCC--CCEEEEEeCCCeEEEEeCCCCCc------------------------
Q psy2113 83 --GGMKKGAIVKSTFSSHKEWVQSVRWSPID--PQLFVSASFDNSVKLWDLRSPKV------------------------ 134 (183)
Q Consensus 83 --~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~vwd~~~~~~------------------------ 134 (183)
........+.+.+..|.-+|+.+...+ + ...++|.+.|.++++||+..+..
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~-Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGS-GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecC-CCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEe
Confidence 112224556778899999999998877 4 35899999999999999987653
Q ss_pred --------------------------------ceEEeccCCC--cEEEEEec-CCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 135 --------------------------------PLFDMLGHED--KVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 135 --------------------------------~~~~~~~~~~--~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
....+.+|.+ +|+|++.+ ++..|++|+.||+++|||+.+.+..
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence 1233457777 99999999 6799999999999999998876543
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.4e-20 Score=129.68 Aligned_cols=153 Identities=18% Similarity=0.308 Sum_probs=131.3
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc-CCeEEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d~~v~vwd~~~~ 83 (183)
..++++.++++.+++.+. +.+| +..+.+.++.+.+|.+.|.+++|-. .+.+++++.|+.+++|++...
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw-------~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~ 276 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIW-------DCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL 276 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEe-------cCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHh
Confidence 467889999999999987 4456 5567788888999999999999984 467999999999999999876
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQD 163 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 163 (183)
.. ...+.+|...|..+.... -++.+..|+.|+++++|++.... ...+.++.+.+-|++|-++.++++|+.|
T Consensus 277 s~------vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~In~~HfvsGSdn 347 (479)
T KOG0299|consen 277 SY------VETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFINDEHFVSGSDN 347 (479)
T ss_pred HH------HHHHhCCccceeeechhc-ccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEecccceeeccCC
Confidence 54 557889999999998776 67777778899999999996554 4578889999999999999999999999
Q ss_pred CcEEEEEecCCCCC
Q psy2113 164 NSVRVFKTKHQPKS 177 (183)
Q Consensus 164 g~i~iwd~~~~~~~ 177 (183)
|.|.+|++.+++..
T Consensus 348 G~IaLWs~~KKkpl 361 (479)
T KOG0299|consen 348 GSIALWSLLKKKPL 361 (479)
T ss_pred ceEEEeeecccCce
Confidence 99999999877654
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-19 Score=126.79 Aligned_cols=152 Identities=25% Similarity=0.363 Sum_probs=119.7
Q ss_pred eeEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~ 81 (183)
.+...-|+|....+.... .+.|.+ .+......+.+|++.|.+.+|+|.+. +++||.||+|++||.+
T Consensus 112 pv~~~~f~~~d~t~l~s~sDd~v~k~~d~-------s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR 184 (487)
T KOG0310|consen 112 PVHVTKFSPQDNTMLVSGSDDKVVKYWDL-------STAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTR 184 (487)
T ss_pred ceeEEEecccCCeEEEecCCCceEEEEEc-------CCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEec
Confidence 445667888776655543 555543 33344668999999999999997643 8999999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEe
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSG 160 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~ 160 (183)
.... ...-..|..+|-.+.+-| .+.++++++. ..|+|||+-++...+.....|...|+|+++. ++..|+++
T Consensus 185 ~~~~------~v~elnhg~pVe~vl~lp-sgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~ 256 (487)
T KOG0310|consen 185 SLTS------RVVELNHGCPVESVLALP-SGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG 256 (487)
T ss_pred cCCc------eeEEecCCCceeeEEEcC-CCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec
Confidence 7642 223346999999999999 8889998874 6899999997776455555699999999998 55999999
Q ss_pred cCCCcEEEEEecCCC
Q psy2113 161 GQDNSVRVFKTKHQP 175 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~ 175 (183)
+-||.+++||+.+.+
T Consensus 257 sLD~~VKVfd~t~~K 271 (487)
T KOG0310|consen 257 SLDRHVKVFDTTNYK 271 (487)
T ss_pred ccccceEEEEccceE
Confidence 999999999966543
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.6e-19 Score=132.63 Aligned_cols=148 Identities=25% Similarity=0.395 Sum_probs=124.6
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~ 84 (183)
.+.+++|..-+..+..+. +++| +...+.....+.+|.+.|.++...+ ..+++|+.|.+|++|++.++.
T Consensus 251 ~V~~l~~~~~~~~lvsgS~D~t~rvW-------d~~sg~C~~~l~gh~stv~~~~~~~-~~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 251 GVWGLAFPSGGDKLVSGSTDKTERVW-------DCSTGECTHSLQGHTSSVRCLTIDP-FLLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CceeEEEecCCCEEEEEecCCcEEeE-------ecCCCcEEEEecCCCceEEEEEccC-ceEeeccCCceEEEEeccCcc
Confidence 445666665455555444 6667 5678889999999999999887532 457789999999999999877
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDN 164 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg 164 (183)
. +..+.+|..+|.++..+ +.++++|+.|++|++||+.+.++ +..+.+|...|.++.+.....+++|+.|+
T Consensus 323 ~------l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~c-l~sl~gH~~~V~sl~~~~~~~~~Sgs~D~ 392 (537)
T KOG0274|consen 323 C------LNLLRGHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGKC-LKSLSGHTGRVYSLIVDSENRLLSGSLDT 392 (537)
T ss_pred e------EEEeccccccEEEEEec---CCEEEEEecCceEEEEEhhhcee-eeeecCCcceEEEEEecCcceEEeeeecc
Confidence 6 66777799999999995 67999999999999999999887 89999999999999887658999999999
Q ss_pred cEEEEEecCC
Q psy2113 165 SVRVFKTKHQ 174 (183)
Q Consensus 165 ~i~iwd~~~~ 174 (183)
+|++||++++
T Consensus 393 ~IkvWdl~~~ 402 (537)
T KOG0274|consen 393 TIKVWDLRTK 402 (537)
T ss_pred ceEeecCCch
Confidence 9999999987
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.9e-19 Score=121.60 Aligned_cols=146 Identities=21% Similarity=0.366 Sum_probs=120.0
Q ss_pred cCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC---eEEEEeCCCeEEEEEcCCCCCccCce
Q psy2113 18 VGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD---EIITSSWDHTLKIWDAELGGMKKGAI 90 (183)
Q Consensus 18 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~l~s~~~d~~v~vwd~~~~~~~~~~~ 90 (183)
++.+++.+. |++| +......+..+-.|.+.|+++.|.+.- .|++|+.||.|.+|+.....+
T Consensus 52 s~~~~aSGssDetI~IY-------Dm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~----- 119 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIY-------DMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL----- 119 (362)
T ss_pred cceeEeccCCCCcEEEE-------eccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE-----
Confidence 455555544 6666 345666777888899999999999543 699999999999999987655
Q ss_pred eEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc------------------------------------
Q psy2113 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV------------------------------------ 134 (183)
Q Consensus 91 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~------------------------------------ 134 (183)
...+++|.+.|+.++.+| .+.+.++.+.|+.+++||+-+++.
T Consensus 120 -~~slK~H~~~Vt~lsiHP-S~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d 197 (362)
T KOG0294|consen 120 -LKSLKAHKGQVTDLSIHP-SGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLD 197 (362)
T ss_pred -eeeecccccccceeEecC-CCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecc
Confidence 778999999999999999 899999999999999999876653
Q ss_pred -------------------------------------------ceEEeccCCCcEEEEEec--CC-cEEEEecCCCcEEE
Q psy2113 135 -------------------------------------------PLFDMLGHEDKVMCVNWS--DY-RYIMSGGQDNSVRV 168 (183)
Q Consensus 135 -------------------------------------------~~~~~~~~~~~v~~~~~~--~~-~~l~~~~~dg~i~i 168 (183)
+...+.+|...|.++.+- |. .+|++++.||.|++
T Consensus 198 ~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~v 277 (362)
T KOG0294|consen 198 NASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKV 277 (362)
T ss_pred cHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEE
Confidence 556677899999999854 33 79999999999999
Q ss_pred EEecCCCCC
Q psy2113 169 FKTKHQPKS 177 (183)
Q Consensus 169 wd~~~~~~~ 177 (183)
||++...+.
T Consensus 278 Wd~~~~~k~ 286 (362)
T KOG0294|consen 278 WDIDMETKK 286 (362)
T ss_pred EEccccccC
Confidence 999987544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-18 Score=120.40 Aligned_cols=153 Identities=30% Similarity=0.493 Sum_probs=122.5
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
...+.|+|++..++++. +.+|++ ...+.+..+..|...|.++.|++++. +++++.++.+++||+++.+
T Consensus 54 i~~~~~~~~~~~l~~~~~~~~i~i~~~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 126 (289)
T cd00200 54 VRDVAASADGTYLASGSSDKTIRLWDL-------ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGK 126 (289)
T ss_pred eeEEEECCCCCEEEEEcCCCeEEEEEc-------CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcE
Confidence 45788999987666654 555543 33356677888999999999998866 5555569999999998655
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQD 163 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d 163 (183)
. ...+..|...+.+++|+| ++.++++++.|+.+++||+++.+. ...+..|...+.++.|+++ ..+++++.|
T Consensus 127 ~------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 127 C------LTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKC-VATLTGHTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred E------EEEeccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEcccccc-ceeEecCccccceEEECCCcCEEEEecCC
Confidence 3 455667889999999999 678888888899999999997765 6677788889999999976 588888889
Q ss_pred CcEEEEEecCCCCC
Q psy2113 164 NSVRVFKTKHQPKS 177 (183)
Q Consensus 164 g~i~iwd~~~~~~~ 177 (183)
+.|++||++..+..
T Consensus 199 ~~i~i~d~~~~~~~ 212 (289)
T cd00200 199 GTIKLWDLSTGKCL 212 (289)
T ss_pred CcEEEEECCCCcee
Confidence 99999999875543
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-20 Score=135.51 Aligned_cols=159 Identities=18% Similarity=0.332 Sum_probs=121.5
Q ss_pred EEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEc-cCC-eEEEEeCCCeEEEEEcCCCCC
Q psy2113 12 GVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWT-AVD-EIITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~-~l~s~~~d~~v~vwd~~~~~~ 85 (183)
.++.+..+..+.... +++|+.... ..-...++..|.+.|.|+++. +++ .+++|+.|+.|.+||+.++..
T Consensus 78 DiiL~~~~~tlIS~SsDtTVK~W~~~~~-----~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~ 152 (735)
T KOG0308|consen 78 DIILCGNGKTLISASSDTTVKVWNAHKD-----NTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA 152 (735)
T ss_pred hHHhhcCCCceEEecCCceEEEeecccC-----cchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcch
Confidence 344445553333322 677765321 124567788999999999994 554 478999999999999986532
Q ss_pred --c--cCceeEEEee-cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcEEEE
Q psy2113 86 --K--KGAIVKSTFS-SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYIMS 159 (183)
Q Consensus 86 --~--~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~ 159 (183)
. ........+. ++..+|.+++.++ .+..+++|+..+.+++||.++.+. +..+++|.+.|..+..++ +..+++
T Consensus 153 ~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~k-imkLrGHTdNVr~ll~~dDGt~~ls 230 (735)
T KOG0308|consen 153 TLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKK-IMKLRGHTDNVRVLLVNDDGTRLLS 230 (735)
T ss_pred hhhhhccccccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccc-eeeeeccccceEEEEEcCCCCeEee
Confidence 0 1111122233 7889999999999 889999999999999999999987 778889999999999995 489999
Q ss_pred ecCCCcEEEEEecCCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~~ 177 (183)
++.||+|++||+..++..
T Consensus 231 ~sSDgtIrlWdLgqQrCl 248 (735)
T KOG0308|consen 231 ASSDGTIRLWDLGQQRCL 248 (735)
T ss_pred cCCCceEEeeecccccee
Confidence 999999999999987654
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.3e-20 Score=128.03 Aligned_cols=130 Identities=25% Similarity=0.464 Sum_probs=106.4
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEE
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 117 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 117 (183)
+.++++++.++-+|.+.|..+.|+ +|.+++++.|.++.+||+.... ...+.+.+.+|...|+.+.|+ ..++++
T Consensus 263 Dv~tge~l~tlihHceaVLhlrf~-ng~mvtcSkDrsiaVWdm~sps---~it~rrVLvGHrAaVNvVdfd---~kyIVs 335 (499)
T KOG0281|consen 263 DVNTGEPLNTLIHHCEAVLHLRFS-NGYMVTCSKDRSIAVWDMASPT---DITLRRVLVGHRAAVNVVDFD---DKYIVS 335 (499)
T ss_pred eccCCchhhHHhhhcceeEEEEEe-CCEEEEecCCceeEEEeccCch---HHHHHHHHhhhhhheeeeccc---cceEEE
Confidence 455777777777788888888775 4777888888888888876543 223345677899999999994 469999
Q ss_pred EeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 118 ASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 118 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
++.|.+|++|++.+... +..+.+|...|.|+.+.. .++++|+.|.+|++||+..+..
T Consensus 336 ASgDRTikvW~~st~ef-vRtl~gHkRGIAClQYr~-rlvVSGSSDntIRlwdi~~G~c 392 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEF-VRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGAC 392 (499)
T ss_pred ecCCceEEEEeccceee-ehhhhcccccceehhccC-eEEEecCCCceEEEEeccccHH
Confidence 99999999999999987 889999999999988865 7999999999999999987753
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-19 Score=117.69 Aligned_cols=125 Identities=21% Similarity=0.421 Sum_probs=110.0
Q ss_pred EEeccCCCeeEEEEccC-CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEE
Q psy2113 47 TLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125 (183)
Q Consensus 47 ~~~~h~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 125 (183)
.+++|..+++.+.|+.+ +.|.+|+.|.+..||-..+++. +..+.+|.+.|+|+..+. +...+++|+.|.+++
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGer------lGty~GHtGavW~~Did~-~s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGER------LGTYDGHTGAVWCCDIDW-DSKHLITGSADQTAK 77 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCce------eeeecCCCceEEEEEecC-CcceeeeccccceeE
Confidence 46799999999999965 4588999999999999877776 778999999999999998 888999999999999
Q ss_pred EEeCCCCCc----------------------------------------------------ceEEeccCCCcEEEEEecC
Q psy2113 126 LWDLRSPKV----------------------------------------------------PLFDMLGHEDKVMCVNWSD 153 (183)
Q Consensus 126 vwd~~~~~~----------------------------------------------------~~~~~~~~~~~v~~~~~~~ 153 (183)
+||++++++ |...+..+.+.++.+.|.+
T Consensus 78 LWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~ 157 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP 157 (327)
T ss_pred EEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence 999999876 4555667778889999996
Q ss_pred -CcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 154 -YRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 154 -~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+++|++|..||.|.+||++++++..
T Consensus 158 l~~~ii~Ghe~G~is~~da~~g~~~v 183 (327)
T KOG0643|consen 158 LGETIIAGHEDGSISIYDARTGKELV 183 (327)
T ss_pred cCCEEEEecCCCcEEEEEcccCceee
Confidence 4899999999999999999975543
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-20 Score=131.23 Aligned_cols=169 Identities=21% Similarity=0.326 Sum_probs=135.6
Q ss_pred CCccceeceeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEecc--CCCeeEEEEccCCe-EEEEeCCCe
Q psy2113 1 MSTNKFGILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGH--KEAISAVQWTAVDE-IITSSWDHT 74 (183)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~-l~s~~~d~~ 74 (183)
|.|...|-++.++..+...+.+.++. +++|++... ....++..+... ...|+++...|+++ |++|+.-.+
T Consensus 413 ~~tL~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~p----g~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 413 INTLAHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQP----GNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred hhhhccCcEEEEEEecCCcceeEecCCCeEEEeeccCC----CCCCccccccccCcccceeeeEecCCCceEEeccccce
Confidence 34567788888888888888777765 999988753 344455555443 45789999998887 999999999
Q ss_pred EEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-
Q psy2113 75 LKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD- 153 (183)
Q Consensus 75 v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~- 153 (183)
+.|||+......- ...+.........++.+| +.....+++.||.|.|||+++... +..+++|.+.+.||+.++
T Consensus 489 lsiWDLAapTpri----kaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~-VrqfqGhtDGascIdis~d 562 (705)
T KOG0639|consen 489 LSIWDLAAPTPRI----KAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISKD 562 (705)
T ss_pred eeeeeccCCCcch----hhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEccccee-eecccCCCCCceeEEecCC
Confidence 9999998765421 223333445578899999 888999999999999999999876 899999999999999994
Q ss_pred CcEEEEecCCCcEEEEEecCCCCCCC
Q psy2113 154 YRYIMSGGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 154 ~~~l~~~~~dg~i~iwd~~~~~~~~~ 179 (183)
+..|-+|+-|.+||-||++++++..+
T Consensus 563 GtklWTGGlDntvRcWDlregrqlqq 588 (705)
T KOG0639|consen 563 GTKLWTGGLDNTVRCWDLREGRQLQQ 588 (705)
T ss_pred CceeecCCCccceeehhhhhhhhhhh
Confidence 58999999999999999999887654
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-19 Score=135.03 Aligned_cols=155 Identities=16% Similarity=0.307 Sum_probs=121.4
Q ss_pred eEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCC
Q psy2113 10 TLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~ 82 (183)
...+.|++....+.+.+ ++.|+ ....+...++.+..++|+.+.|+|. +.|+++...|.+.+||++.
T Consensus 136 ~~~ldfh~tep~iliSGSQDg~vK~~D-------lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRq 208 (839)
T KOG0269|consen 136 ANKLDFHSTEPNILISGSQDGTVKCWD-------LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQ 208 (839)
T ss_pred eeeeeeccCCccEEEecCCCceEEEEe-------eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccC
Confidence 45667888776666544 77774 4455666778889999999999964 5699999999999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEe
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSG 160 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~ 160 (183)
... ....+..|.++|.|+.|+| ++.+|+||+.|+.|+|||+.+.+........--.+|.+|+|.|. .+|+++
T Consensus 209 p~r-----~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtc 282 (839)
T KOG0269|consen 209 PDR-----CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATC 282 (839)
T ss_pred chh-----HHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhh
Confidence 654 2456788999999999999 89999999999999999998765422222233468999999976 677776
Q ss_pred cC--CCcEEEEEecCCCCC
Q psy2113 161 GQ--DNSVRVFKTKHQPKS 177 (183)
Q Consensus 161 ~~--dg~i~iwd~~~~~~~ 177 (183)
+. |..|+|||++.+-.+
T Consensus 283 smv~dtsV~VWDvrRPYIP 301 (839)
T KOG0269|consen 283 SMVVDTSVHVWDVRRPYIP 301 (839)
T ss_pred hccccceEEEEeecccccc
Confidence 55 778999999977544
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=119.83 Aligned_cols=158 Identities=17% Similarity=0.295 Sum_probs=126.1
Q ss_pred eeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 6 FGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
++-.+..+.|+.+|.++++++ +.+| ...++.....+...-+.|.=+.|+|.+. |++|+.||.+-+|.+
T Consensus 105 HKDSVt~~~FshdgtlLATGdmsG~v~v~-------~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~i 177 (399)
T KOG0296|consen 105 HKDSVTCCSFSHDGTLLATGDMSGKVLVF-------KVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQI 177 (399)
T ss_pred CCCceEEEEEccCceEEEecCCCccEEEE-------EcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEEC
Confidence 344567788999999999988 4444 3345666666665666778888898766 889999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc--------------------------
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV-------------------------- 134 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------- 134 (183)
.+... ...+.+|..++++=.|.| ++..++++..||+|++||+.++.+
T Consensus 178 p~~~~------~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~ 250 (399)
T KOG0296|consen 178 PSQAL------CKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTK 250 (399)
T ss_pred CCcce------eeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEe
Confidence 87543 667899999999999999 799999999999999999998764
Q ss_pred --------------------------------------------------------------------ceEEeccCCCcE
Q psy2113 135 --------------------------------------------------------------------PLFDMLGHEDKV 146 (183)
Q Consensus 135 --------------------------------------------------------------------~~~~~~~~~~~v 146 (183)
.......|...|
T Consensus 251 g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V 330 (399)
T KOG0296|consen 251 GNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGV 330 (399)
T ss_pred ccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCce
Confidence 122233677788
Q ss_pred EEEEecCCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 147 MCVNWSDYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 147 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
..+.|.+..+|++++.||.|+.||.|+++..
T Consensus 331 ~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 331 TKLKWLNTDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred EEEEEcCcchheeeccCceEEeeeccccceE
Confidence 8888888788888888888888888887654
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=117.55 Aligned_cols=155 Identities=18% Similarity=0.347 Sum_probs=120.1
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 85 (183)
..++.|+|.+..+.++. +.+|+++. ......+ .|..++.+++|.+...+++|+.||.|+.+|+.+++.
T Consensus 16 IS~v~f~~~~~~LLvssWDgslrlYdv~~-------~~l~~~~-~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSWDGSLRLYDVPA-------NSLKLKF-KHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred eeeEEEcCcCCcEEEEeccCcEEEEeccc-------hhhhhhe-ecCCceeeeeccCCceEEEeccCceEEEEEecCCcc
Confidence 45788888887776654 55554432 2233333 489999999999989999999999999999998773
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc-------------------------------
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV------------------------------- 134 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~------------------------------- 134 (183)
..+..|...+.|+.+++ ....+++|+.|++|++||.+....
T Consensus 88 -------~~igth~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~i 159 (323)
T KOG1036|consen 88 -------DQIGTHDEGIRCIEYSY-EVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLI 159 (323)
T ss_pred -------eeeccCCCceEEEEeec-cCCeEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEE
Confidence 46778999999999998 778999999999999999994322
Q ss_pred -------------------------------------------------------ceEEeccCCC---------cEEEEE
Q psy2113 135 -------------------------------------------------------PLFDMLGHED---------KVMCVN 150 (183)
Q Consensus 135 -------------------------------------------------------~~~~~~~~~~---------~v~~~~ 150 (183)
....++.|.. +|++++
T Consensus 160 yDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 160 YDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred EEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 1223334432 688999
Q ss_pred ecCC-cEEEEecCCCcEEEEEecCCCCCCCc
Q psy2113 151 WSDY-RYIMSGGQDNSVRVFKTKHQPKSGQK 180 (183)
Q Consensus 151 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 180 (183)
|+|- +.|+||+.||.|.+||+.+.++..+.
T Consensus 240 Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~ 270 (323)
T KOG1036|consen 240 FHPIHGTFATGGSDGIVNIWDLFNRKRLKQL 270 (323)
T ss_pred eccccceEEecCCCceEEEccCcchhhhhhc
Confidence 9976 88999999999999999888776554
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.9e-18 Score=129.79 Aligned_cols=130 Identities=27% Similarity=0.453 Sum_probs=113.5
Q ss_pred cccCccceEE-EeccCCCeeEEEEcc-CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEE
Q psy2113 38 LILQKTPLIT-LKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF 115 (183)
Q Consensus 38 ~~~~~~~~~~-~~~h~~~v~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 115 (183)
+..+...+.. +.+|.+.|.++++.. ++.+++|+.|.++++||..++.+ ...+.+|...+.++...+ ..+
T Consensus 234 ~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C------~~~l~gh~stv~~~~~~~---~~~ 304 (537)
T KOG0274|consen 234 DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC------THSLQGHTSSVRCLTIDP---FLL 304 (537)
T ss_pred ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcE------EEEecCCCceEEEEEccC---ceE
Confidence 3345555555 999999999999985 56799999999999999999887 778999999999998854 588
Q ss_pred EEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 116 VSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 116 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
++|+.|.+|++|+++++.. +..+.+|.++|+++..+ +.++++|+.|++|++||+++.+...
T Consensus 305 ~sgs~D~tVkVW~v~n~~~-l~l~~~h~~~V~~v~~~-~~~lvsgs~d~~v~VW~~~~~~cl~ 365 (537)
T KOG0274|consen 305 VSGSRDNTVKVWDVTNGAC-LNLLRGHTGPVNCVQLD-EPLLVSGSYDGTVKVWDPRTGKCLK 365 (537)
T ss_pred eeccCCceEEEEeccCcce-EEEeccccccEEEEEec-CCEEEEEecCceEEEEEhhhceeee
Confidence 8899999999999999887 78888899999999998 6899999999999999999776543
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=127.04 Aligned_cols=153 Identities=20% Similarity=0.306 Sum_probs=125.5
Q ss_pred ceeceeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcC
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAE 81 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~ 81 (183)
.....+.++++-|...+++++. +++|. .++.+++|.+|.+.|+++++-+++.|++|+.||.|++|++.
T Consensus 138 gH~asVWAv~~l~e~~~vTgsaDKtIklWk---------~~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ 208 (745)
T KOG0301|consen 138 GHTASVWAVASLPENTYVTGSADKTIKLWK---------GGTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLD 208 (745)
T ss_pred CcchheeeeeecCCCcEEeccCcceeeecc---------CCchhhhhccchhheeeeEEecCCCeEeecCCceEEEEecc
Confidence 3445566788888887777655 77774 46678899999999999999999999999999999999994
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEec
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGG 161 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 161 (183)
++. +....+|...+.+++..+ +...+++++.|+++++|+.. .+ .+.+.-..-.|+++.+.++.-+++|+
T Consensus 209 -ge~------l~~~~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~-~q~I~lPttsiWsa~~L~NgDIvvg~ 277 (745)
T KOG0301|consen 209 -GEV------LLEMHGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--EC-VQVITLPTTSIWSAKVLLNGDIVVGG 277 (745)
T ss_pred -Cce------eeeeeccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ce-EEEEecCccceEEEEEeeCCCEEEec
Confidence 443 667889999999999777 67799999999999999987 22 44444444589999988878899999
Q ss_pred CCCcEEEEEecCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKS 177 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~ 177 (183)
.||.||||..+..+..
T Consensus 278 SDG~VrVfT~~k~R~A 293 (745)
T KOG0301|consen 278 SDGRVRVFTVDKDRKA 293 (745)
T ss_pred cCceEEEEEecccccC
Confidence 9999999998765543
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-20 Score=137.89 Aligned_cols=154 Identities=31% Similarity=0.436 Sum_probs=133.9
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
..-++.|+++..+++++. +++|++ ...+.+.++.+|...+.++.|+|-+. .++|+.|..+.+||.+..
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDl-------eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDL-------EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeeh-------hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 345677888888887754 888854 46777889999999999999999877 678999999999999977
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQ 162 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~ 162 (183)
.+ ...+.+|..-|.++.|+| ++++++.|+.|..+++||...++. ...+..|++.+..+.|+|. -++++|+.
T Consensus 145 Gc------~~~~~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~-~~ef~~~e~~v~sle~hp~e~Lla~Gs~ 216 (825)
T KOG0267|consen 145 GC------SHTYKSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKL-SKEFKSHEGKVQSLEFHPLEVLLAPGSS 216 (825)
T ss_pred Cc------eeeecCCcceeEEEeecC-CCceeeccCCcceeeeeccccccc-ccccccccccccccccCchhhhhccCCC
Confidence 66 668888999999999999 999999999999999999999886 7788999999999999987 67789999
Q ss_pred CCcEEEEEecCCCCC
Q psy2113 163 DNSVRVFKTKHQPKS 177 (183)
Q Consensus 163 dg~i~iwd~~~~~~~ 177 (183)
|+++++||+++-+..
T Consensus 217 d~tv~f~dletfe~I 231 (825)
T KOG0267|consen 217 DRTVRFWDLETFEVI 231 (825)
T ss_pred CceeeeeccceeEEe
Confidence 999999999965444
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-17 Score=109.25 Aligned_cols=130 Identities=21% Similarity=0.339 Sum_probs=102.3
Q ss_pred CccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeec---CCcceEEEEEecCCCCEEEE
Q psy2113 41 QKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSS---HKEWVQSVRWSPIDPQLFVS 117 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~ 117 (183)
.+.....+.+|.+-|.++---++-.+++|+.|.+|++||++-+.+....- ..+.+ ....|.+++..| .++++++
T Consensus 172 ~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~--~~~~~~glessavaav~vdp-sgrll~s 248 (350)
T KOG0641|consen 172 RGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLD--NDFHDGGLESSAVAAVAVDP-SGRLLAS 248 (350)
T ss_pred CCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeecc--CcccCCCcccceeEEEEECC-Ccceeee
Confidence 34456666777777766643344568899999999999998665421000 01111 235789999999 9999999
Q ss_pred EeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 118 ASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 118 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
|..|....+||++.++. ++.+..|...|.++.|+|+ .++++++.|.+|++-|+...
T Consensus 249 g~~dssc~lydirg~r~-iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 249 GHADSSCMLYDIRGGRM-IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred ccCCCceEEEEeeCCce-eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99999999999999886 8999999999999999998 89999999999999998643
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=123.43 Aligned_cols=125 Identities=28% Similarity=0.505 Sum_probs=105.6
Q ss_pred EeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEE
Q psy2113 48 LKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125 (183)
Q Consensus 48 ~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 125 (183)
..+|++.|..+.|+.. +.|++||.|.+|.+||+.++++ ...+..|.+.|.++.|+|..+..+++|+.|+++.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p------~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~ 312 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP------KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVA 312 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc------ceehhhcCCceeEEEecCCCceEEEeccccceEE
Confidence 4579999999999854 5599999999999999999887 5577789999999999998899999999999999
Q ss_pred EEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCCCCCC
Q psy2113 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 126 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 179 (183)
+.|.|.... ....-.-.+.|..++|.+. ..++++..||.|+-+|+|+..++..
T Consensus 313 l~D~R~~~~-s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw 367 (463)
T KOG0270|consen 313 LKDCRDPSN-SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW 367 (463)
T ss_pred eeeccCccc-cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee
Confidence 999997544 2222234678999999965 7888999999999999999876543
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=125.75 Aligned_cols=156 Identities=19% Similarity=0.307 Sum_probs=126.4
Q ss_pred EEEE-eecCcEEEEEE----eccCCCCcccc---cccCccceEEEe-ccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 12 GVIF-MTVGALLTLTN----IEVTSLPSFFQ---LILQKTPLITLK-GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 12 ~~~~-~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
.+++ .++..+++.++ +.+|.+..... ..........+. ++..+|++++-++.+. +++|+..+-+++||.+
T Consensus 122 cla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDpr 201 (735)
T KOG0308|consen 122 CLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPR 201 (735)
T ss_pred eeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccc
Confidence 4455 55666666655 66666543211 112223334444 8999999999998887 7899999999999999
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
+.+. .-.+++|...|.++..++ +++.+++++.||+|++||+...++ +.++..|...|+++..++. .++++|
T Consensus 202 t~~k------imkLrGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrC-l~T~~vH~e~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 202 TCKK------IMKLRGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRC-LATYIVHKEGVWALQSSPSFTHVYSG 273 (735)
T ss_pred cccc------eeeeeccccceEEEEEcC-CCCeEeecCCCceEEeeeccccce-eeeEEeccCceEEEeeCCCcceEEec
Confidence 8776 557889999999999999 899999999999999999999888 8889999999999999988 999999
Q ss_pred cCCCcEEEEEecCCC
Q psy2113 161 GQDNSVRVFKTKHQP 175 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~ 175 (183)
+.||.|..=|+++..
T Consensus 274 ~rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 274 GRDGNIYRTDLRNPA 288 (735)
T ss_pred CCCCcEEecccCCch
Confidence 999999999998863
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=8e-18 Score=117.08 Aligned_cols=137 Identities=28% Similarity=0.495 Sum_probs=113.6
Q ss_pred cCccceEEEeccCCCeeEEEEc-cCC---eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEE
Q psy2113 40 LQKTPLITLKGHKEAISAVQWT-AVD---EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF 115 (183)
Q Consensus 40 ~~~~~~~~~~~h~~~v~~~~~~-~~~---~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 115 (183)
..++....+.+|.++|.+++|. ++. .|++++.|.++++|....+...... .....+|...|-+++..+ ++..+
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~--~~~~~GHk~~V~sVsv~~-sgtr~ 208 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKA--LKVCRGHKRSVDSVSVDS-SGTRF 208 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhH--HhHhcccccceeEEEecC-CCCeE
Confidence 3677888999999999999997 443 3999999999999998876543211 122349999999999999 89999
Q ss_pred EEEeCCCeEEEEeCCCCC------------------------cceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEe
Q psy2113 116 VSASFDNSVKLWDLRSPK------------------------VPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 116 ~~~~~dg~i~vwd~~~~~------------------------~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~ 171 (183)
++|+.|..+++|+..+.. .|+..+.+|..+|.++.|++...+++++.|.+|+.||+
T Consensus 209 ~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDl 288 (423)
T KOG0313|consen 209 CSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDL 288 (423)
T ss_pred EeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEe
Confidence 999999999999933211 16788899999999999999899999999999999999
Q ss_pred cCCCCCCC
Q psy2113 172 KHQPKSGQ 179 (183)
Q Consensus 172 ~~~~~~~~ 179 (183)
.+++....
T Consensus 289 etg~~~~~ 296 (423)
T KOG0313|consen 289 ETGGLKST 296 (423)
T ss_pred ecccceee
Confidence 99876643
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=117.60 Aligned_cols=126 Identities=20% Similarity=0.299 Sum_probs=109.1
Q ss_pred ccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCC--CEEEEEe
Q psy2113 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDP--QLFVSAS 119 (183)
Q Consensus 42 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~--~~l~~~~ 119 (183)
..++..+..|.++|++++.+ ...+++|+.|.+|+|||++.... ...+..|.+.|+++.|.+ .. +.|++|+
T Consensus 33 l~~lF~~~aH~~sitavAVs-~~~~aSGssDetI~IYDm~k~~q------lg~ll~HagsitaL~F~~-~~S~shLlS~s 104 (362)
T KOG0294|consen 33 LKPLFAFSAHAGSITALAVS-GPYVASGSSDETIHIYDMRKRKQ------LGILLSHAGSITALKFYP-PLSKSHLLSGS 104 (362)
T ss_pred eeccccccccccceeEEEec-ceeEeccCCCCcEEEEeccchhh------hcceeccccceEEEEecC-Ccchhheeeec
Confidence 34577788999999999974 24589999999999999987765 556778999999999988 44 3899999
Q ss_pred CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 120 FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 120 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.||.|.+|+...... +..+.+|...|+.++.+|. .+-++.+.|+.+++||+-.++.
T Consensus 105 dDG~i~iw~~~~W~~-~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~ 161 (362)
T KOG0294|consen 105 DDGHIIIWRVGSWEL-LKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV 161 (362)
T ss_pred CCCcEEEEEcCCeEE-eeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCcc
Confidence 999999999999866 8899999999999999987 6777899999999999887764
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.8e-18 Score=129.33 Aligned_cols=164 Identities=23% Similarity=0.376 Sum_probs=132.3
Q ss_pred eeceeEEEEEeecCcEEEEEE----eccCCCCc------c-----cccccCccceEEEeccCCCeeEEEEccCCe-EEEE
Q psy2113 6 FGILTLGVIFMTVGALLTLTN----IEVTSLPS------F-----FQLILQKTPLITLKGHKEAISAVQWTAVDE-IITS 69 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~------~-----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~ 69 (183)
+-.....+-|+|+|..++.+. +.+|.... + ..+.+..+.+..+.+|.+.|..++|+|++. |+++
T Consensus 68 h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~ 147 (942)
T KOG0973|consen 68 HDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV 147 (942)
T ss_pred ccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEe
Confidence 334456677999999999876 44465441 1 224456678899999999999999999876 8899
Q ss_pred eCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc---------------
Q psy2113 70 SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--------------- 134 (183)
Q Consensus 70 ~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~--------------- 134 (183)
+.|++|.+|+..+-+. ...+.+|.+.|..+.|.| -+++|++-+.|++|++|++.+...
T Consensus 148 s~DnsViiwn~~tF~~------~~vl~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T 220 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTFEL------LKVLRGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTT 220 (942)
T ss_pred cccceEEEEcccccee------eeeeecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcc
Confidence 9999999999988754 678899999999999999 899999999999999999654221
Q ss_pred ------------------------------------ceEEeccCCCcEEEEEecC------Cc------------EEEEe
Q psy2113 135 ------------------------------------PLFDMLGHEDKVMCVNWSD------YR------------YIMSG 160 (183)
Q Consensus 135 ------------------------------------~~~~~~~~~~~v~~~~~~~------~~------------~l~~~ 160 (183)
.-..+.+|..++.+++|+| .. .+++|
T Consensus 221 ~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 221 FFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVG 300 (942)
T ss_pred eeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEe
Confidence 2334559999999999985 12 67899
Q ss_pred cCCCcEEEEEecCCCC
Q psy2113 161 GQDNSVRVFKTKHQPK 176 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~~ 176 (183)
+.|+.|.||.....+.
T Consensus 301 SqDrSlSVW~T~~~RP 316 (942)
T KOG0973|consen 301 SQDRSLSVWNTALPRP 316 (942)
T ss_pred cCCccEEEEecCCCCc
Confidence 9999999999866554
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-18 Score=119.83 Aligned_cols=162 Identities=19% Similarity=0.322 Sum_probs=131.8
Q ss_pred eceeEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEE
Q psy2113 7 GILTLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWD 79 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd 79 (183)
-..++.++|+|......+.. +.+|.++.........+++..+.+|...|.-++|+|. +.|++++.|.+|.+|+
T Consensus 81 t~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWn 160 (472)
T KOG0303|consen 81 TAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWN 160 (472)
T ss_pred cccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEEe
Confidence 35678899999887666543 8899999877666777899999999999999999986 4599999999999999
Q ss_pred cCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCC-cEEEEEec-CCcEE
Q psy2113 80 AELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHED-KVMCVNWS-DYRYI 157 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l 157 (183)
+.+++. ...+. |...|.+++|+. ++.+++|.+.|..|+|||.++++. +....+|.+ ....+.|. ++..+
T Consensus 161 v~tgea------li~l~-hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~-v~e~~~heG~k~~Raifl~~g~i~ 231 (472)
T KOG0303|consen 161 VGTGEA------LITLD-HPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTV-VSEGVAHEGAKPARAIFLASGKIF 231 (472)
T ss_pred ccCCce------eeecC-CCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcE-eeecccccCCCcceeEEeccCcee
Confidence 998875 33454 999999999999 899999999999999999999986 666677875 34556666 44544
Q ss_pred EEe---cCCCcEEEEEecCCCCC
Q psy2113 158 MSG---GQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 158 ~~~---~~dg~i~iwd~~~~~~~ 177 (183)
-+| ..+.++.+||...-+.+
T Consensus 232 tTGfsr~seRq~aLwdp~nl~eP 254 (472)
T KOG0303|consen 232 TTGFSRMSERQIALWDPNNLEEP 254 (472)
T ss_pred eeccccccccceeccCcccccCc
Confidence 443 34788999998876655
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-18 Score=121.40 Aligned_cols=132 Identities=20% Similarity=0.353 Sum_probs=112.4
Q ss_pred cCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEE
Q psy2113 40 LQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118 (183)
Q Consensus 40 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 118 (183)
.+.+..+.+..|.+.|..+.|+++|+ ||+++.|.+.-+|++..... ..+..++.+|..+|.-+.|+| +.+++++|
T Consensus 212 ip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~---~kl~~tlvgh~~~V~yi~wSP-DdryLlaC 287 (519)
T KOG0293|consen 212 IPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH---FKLKKTLVGHSQPVSYIMWSP-DDRYLLAC 287 (519)
T ss_pred CCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc---eeeeeeeecccCceEEEEECC-CCCeEEec
Confidence 34455677889999999999998887 89999999999999876543 445678889999999999999 88899999
Q ss_pred eCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 119 SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 119 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+.|..+.+||+.++........++...+.+++|.|+ ..+++|+.|+.|..||+....
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI 345 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch
Confidence 999999999999998633334456689999999976 889999999999999987654
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=5e-18 Score=114.66 Aligned_cols=165 Identities=16% Similarity=0.268 Sum_probs=125.1
Q ss_pred ceeceeEEEEEeecCcEEE-EEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEE
Q psy2113 5 KFGILTLGVIFMTVGALLT-LTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKI 77 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~v 77 (183)
.|+....++.|+-....+. +.. ..+|++... ..+.....+-+|..+|+.++|..++ .|++.+.||.+|+
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~----~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRm 223 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG----VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRM 223 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeec----cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEE
Confidence 5677777777776554433 332 455654321 1223345677899999999999754 4999999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC-eEEEEeCCCCCcceEEeccCCCcEEEEEecCC--
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN-SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-- 154 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-- 154 (183)
||++..+... ++. .-.....+...++|++++.+++++-..|. .|.+.|+|.+..++..+++|.+.|+.++|.|.
T Consensus 224 FDLR~leHST--IIY-E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~ 300 (364)
T KOG0290|consen 224 FDLRSLEHST--IIY-EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS 300 (364)
T ss_pred EEecccccce--EEe-cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC
Confidence 9999866421 111 11112567889999998889999877665 79999999998889999999999999999986
Q ss_pred cEEEEecCCCcEEEEEecCCCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.+|.+++.|.++.+||+.+..+
T Consensus 301 ~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 301 SHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred ceeeecCCcceEEEEecccccc
Confidence 8999999999999999988765
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-17 Score=110.37 Aligned_cols=170 Identities=17% Similarity=0.294 Sum_probs=120.6
Q ss_pred cceeceeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccC-CeEEEEeCCCeEEEEEcCC
Q psy2113 4 NKFGILTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~ 82 (183)
.|||+.+.-....+ ...+...+ .++-...+....+.+-+.-+.||...|++|+.+|- +.+++++.|++|++||++.
T Consensus 55 kkyG~~~~~Fth~~-~~~i~sSt--k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~ 131 (311)
T KOG1446|consen 55 KKYGVDLACFTHHS-NTVIHSST--KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRV 131 (311)
T ss_pred ccccccEEEEecCC-ceEEEccC--CCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecC
Confidence 47777776654433 33333333 12222223355677888999999999999999986 4599999999999999996
Q ss_pred CCCc------------------------cC-ce-----------eEEEee---cCCcceEEEEEecCCCCEEEEEeCCCe
Q psy2113 83 GGMK------------------------KG-AI-----------VKSTFS---SHKEWVQSVRWSPIDPQLFVSASFDNS 123 (183)
Q Consensus 83 ~~~~------------------------~~-~~-----------~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~ 123 (183)
.++. .. .+ +...+. +.....+.+.|+| +|..++.+...+.
T Consensus 132 ~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~-dGK~iLlsT~~s~ 210 (311)
T KOG1446|consen 132 KKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP-DGKSILLSTNASF 210 (311)
T ss_pred CCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcC-CCCEEEEEeCCCc
Confidence 5543 00 00 001111 2245678999999 8888888889999
Q ss_pred EEEEeCCCCCcceEEeccCCCcE---EEEEecCC-cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 124 VKLWDLRSPKVPLFDMLGHEDKV---MCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 124 i~vwd~~~~~~~~~~~~~~~~~v---~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+++.|.-++.. ...+..+...- ....|.|+ +++++|+.||+|++|+++++.+..
T Consensus 211 ~~~lDAf~G~~-~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 211 IYLLDAFDGTV-KSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVA 268 (311)
T ss_pred EEEEEccCCcE-eeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEee
Confidence 99999999885 66666655332 56678877 899999999999999998887653
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-17 Score=118.40 Aligned_cols=156 Identities=15% Similarity=0.292 Sum_probs=124.6
Q ss_pred EEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEEEEcCCC
Q psy2113 11 LGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vwd~~~~ 83 (183)
++++++..-+.+.+.. +.+| +...+++..++..|.+.|.+++|+|.. .|++|+.|++|.+.|.|..
T Consensus 247 l~Ls~n~~~~nVLaSgsaD~TV~lW-------D~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~ 319 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSADKTVKLW-------DVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDP 319 (463)
T ss_pred HHHHhccccceeEEecCCCceEEEE-------EcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCc
Confidence 4455555544443332 6667 556888888999999999999999763 3999999999999999863
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEec
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGG 161 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~ 161 (183)
... ...-...+.|-.++|.|.....++++..||.++-+|+|....++..++.|.++|.+++++.. .++++++
T Consensus 320 ~~s------~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s 393 (463)
T KOG0270|consen 320 SNS------GKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS 393 (463)
T ss_pred ccc------CceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc
Confidence 321 11122467799999999888899999999999999999987779999999999999999954 7899999
Q ss_pred CCCcEEEEEecCCCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~~~ 179 (183)
.|+.+++|++........
T Consensus 394 ~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 394 TDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred ccceEEEEeecCCCCccc
Confidence 999999999887665433
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-17 Score=124.60 Aligned_cols=163 Identities=17% Similarity=0.318 Sum_probs=122.5
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
+|-.....++|+.+|.+++++. +++. +.........+.+|.++|.++.|+|.+. |++.+.||.|++||
T Consensus 94 Rftlp~r~~~v~g~g~~iaagsdD~~vK~~-------~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 94 RFTLPIRDLAVSGSGKMIAAGSDDTAVKLL-------NLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD 166 (933)
T ss_pred eeeccceEEEEecCCcEEEeecCceeEEEE-------eccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence 5667778889999999999876 4433 3344555678899999999999999877 77889999999999
Q ss_pred cCCCCCccCceeEEEee--cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe--ccCCCcEEEEEecCC-
Q psy2113 80 AELGGMKKGAIVKSTFS--SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM--LGHEDKVMCVNWSDY- 154 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~- 154 (183)
+.++...........-. .....+..++|+| ++..++..+.|+.|++|+...... ...+ ..+...+.++.|+|.
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~-~f~Lr~~~~ss~~~~~~wsPnG 244 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWEL-QFKLRDKLSSSKFSDLQWSPNG 244 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCcee-heeecccccccceEEEEEcCCC
Confidence 99876532211111111 1145678899999 555666677899999999998875 3333 234455899999976
Q ss_pred cEEEEecCCCcEEEEEecCCCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.|||+++.||.|.|||..+.+.
T Consensus 245 ~YiAAs~~~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 245 KYIAASTLDGQILVWNVDTHER 266 (933)
T ss_pred cEEeeeccCCcEEEEecccchh
Confidence 9999999999999999997443
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-18 Score=125.21 Aligned_cols=134 Identities=23% Similarity=0.407 Sum_probs=105.8
Q ss_pred ceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 44 PLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 44 ~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
.+.....|.+.|..+.|.|.. +|++++.|.++++||+.+.++.. ...+.+|.+.|.+++|.|.+...|++|+.||
T Consensus 92 ~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G----~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg 167 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVG----GRLNLGHTGSVKSECFMPTNPAVFCTGGRDG 167 (720)
T ss_pred hhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeec----ceeecccccccchhhhccCCCcceeeccCCC
Confidence 346667899999999999854 39999999999999999877633 2347799999999999998889999999999
Q ss_pred eEEEEeCCCCCc-------------------c-------eEEeccCC----CcEEEEEecCCcEEEEecC-CCcEEEEEe
Q psy2113 123 SVKLWDLRSPKV-------------------P-------LFDMLGHE----DKVMCVNWSDYRYIMSGGQ-DNSVRVFKT 171 (183)
Q Consensus 123 ~i~vwd~~~~~~-------------------~-------~~~~~~~~----~~v~~~~~~~~~~l~~~~~-dg~i~iwd~ 171 (183)
.|.|||++-... + ......+. +.|+.+.|-++..|++++. |+.|++||+
T Consensus 168 ~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDL 247 (720)
T KOG0321|consen 168 EILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDL 247 (720)
T ss_pred cEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEee
Confidence 999999984321 0 01111222 2466677778889998888 999999999
Q ss_pred cCCCCCCCcc
Q psy2113 172 KHQPKSGQKS 181 (183)
Q Consensus 172 ~~~~~~~~~~ 181 (183)
+......+++
T Consensus 248 Rk~~~~~r~e 257 (720)
T KOG0321|consen 248 RKNYTAYRQE 257 (720)
T ss_pred cccccccccC
Confidence 9988776554
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-18 Score=111.63 Aligned_cols=123 Identities=22% Similarity=0.366 Sum_probs=104.7
Q ss_pred eccCCCeeEEEEc-cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEE-ecCCCCEEEEEeCCCeEEE
Q psy2113 49 KGHKEAISAVQWT-AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRW-SPIDPQLFVSASFDNSVKL 126 (183)
Q Consensus 49 ~~h~~~v~~~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~p~~~~~l~~~~~dg~i~v 126 (183)
..|.+.|..+... -+.+|++|+.|++|+|+..++... ..++..+.+|.++|..++| +|.-+.+|++++.||.|.+
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~---s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIi 84 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ---SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC---ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEE
Confidence 4688888888776 445699999999999999987654 2347789999999999998 6777899999999999999
Q ss_pred EeCCCCCc-ceEEeccCCCcEEEEEecCC---cEEEEecCCCcEEEEEecCC
Q psy2113 127 WDLRSPKV-PLFDMLGHEDKVMCVNWSDY---RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 127 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~---~~l~~~~~dg~i~iwd~~~~ 174 (183)
|.-.+++- .......|...|++++|.|. -.|++++.||.|.|.+.+..
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 99988752 25567789999999999975 57899999999999998876
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-17 Score=117.65 Aligned_cols=161 Identities=23% Similarity=0.384 Sum_probs=124.2
Q ss_pred eeEEEEEeecCc--EEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEEEEc
Q psy2113 9 LTLGVIFMTVGA--LLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKIWDA 80 (183)
Q Consensus 9 ~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vwd~ 80 (183)
...+++|+|... ++++++ +.+|++. .+......+..+..|..+|.+|.|+|.+ ++++.|.||++++-|+
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~---~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~ 264 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFG---TQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF 264 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecC---CCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeee
Confidence 457889999775 555554 7778764 1344555677888999999999999764 5999999999999998
Q ss_pred CCCCCc---------------------------------------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 81 ELGGMK---------------------------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 81 ~~~~~~---------------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
+..... ........+..|+..|..++++|....+++|++.|
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D 344 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLD 344 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccC
Confidence 753221 00111222344777899999999888999999999
Q ss_pred CeEEEEeCCCCCc---ceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEec
Q psy2113 122 NSVKLWDLRSPKV---PLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 122 g~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~ 172 (183)
+++++||+|.... |......|...|.+..|+|. ..|++-+.|..|+|||..
T Consensus 345 ~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 345 QTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred cceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 9999999996432 23556689999999999975 669999999999999984
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=110.16 Aligned_cols=131 Identities=29% Similarity=0.459 Sum_probs=106.9
Q ss_pred CccceEEEeccCCCeeEEEEc-cC-C-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCC-CCEEE
Q psy2113 41 QKTPLITLKGHKEAISAVQWT-AV-D-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID-PQLFV 116 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~-~~-~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~ 116 (183)
...++.++.+|.++|..++|. |. | .|++++.||+|.||.-.++...+ ......|...|++++|.|.+ +-.|+
T Consensus 45 ~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k----~~e~~~h~~SVNsV~wapheygl~La 120 (299)
T KOG1332|consen 45 QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTK----AYEHAAHSASVNSVAWAPHEYGLLLA 120 (299)
T ss_pred CceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhh----hhhhhhhcccceeecccccccceEEE
Confidence 347788999999999999998 42 4 48999999999999988775433 44567899999999999943 34788
Q ss_pred EEeCCCeEEEEeCCCC--CcceEEeccCCCcEEEEEecCC---------------cEEEEecCCCcEEEEEecCCC
Q psy2113 117 SASFDNSVKLWDLRSP--KVPLFDMLGHEDKVMCVNWSDY---------------RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~v~~~~~~~~---------------~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+++.||.|.+.+.+.. -........|.-.|+++.|.|. ..|++|+.|..|+||+.....
T Consensus 121 casSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~ 196 (299)
T KOG1332|consen 121 CASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS 196 (299)
T ss_pred EeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc
Confidence 8999999999998865 1224456789999999999853 469999999999999988763
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=117.35 Aligned_cols=156 Identities=22% Similarity=0.366 Sum_probs=126.7
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEE--eCCCeEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITS--SWDHTLK 76 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~--~~d~~v~ 76 (183)
...-.+.++.|++++..++.+. +.+|+. ....+...+..|...|..++|+|- +.||+| +.|+.|+
T Consensus 299 ~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~-------~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~ 371 (484)
T KOG0305|consen 299 GHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG-------LSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIK 371 (484)
T ss_pred cccceeeeeEECCCCCeeccCCCccceEeccC-------CCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEE
Confidence 3556788999999999999876 666643 566778889999999999999975 558875 5699999
Q ss_pred EEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEE--eCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC
Q psy2113 77 IWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA--SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY 154 (183)
Q Consensus 77 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 154 (183)
+||..++.. +. .......|..+.|++ ....++++ ..+..|.||+..+.+. +..+.+|...|..++++|+
T Consensus 372 fwn~~~g~~------i~-~vdtgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~~-~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 372 FWNTNTGAR------ID-SVDTGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMKL-VAELLGHTSRVLYLALSPD 442 (484)
T ss_pred EEEcCCCcE------ec-ccccCCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccce-eeeecCCcceeEEEEECCC
Confidence 999987764 32 234567899999999 55444443 3467899999999765 8899999999999999977
Q ss_pred -cEEEEecCCCcEEEEEecCCCC
Q psy2113 155 -RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 155 -~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
..+++|+.|.++++|++=...+
T Consensus 443 g~~i~t~a~DETlrfw~~f~~~~ 465 (484)
T KOG0305|consen 443 GETIVTGAADETLRFWNLFDERP 465 (484)
T ss_pred CCEEEEecccCcEEeccccCCCC
Confidence 9999999999999999876533
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-17 Score=122.41 Aligned_cols=161 Identities=19% Similarity=0.253 Sum_probs=129.0
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEe-----ccCCCeeEEEEccCCe-EEEEeCCCeEEE
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLK-----GHKEAISAVQWTAVDE-IITSSWDHTLKI 77 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~-l~s~~~d~~v~v 77 (183)
....+++.+|++.-+.++. ++.|++........+.+.+..+. .-.+.|.|++++|+++ |+.+-.|.+++|
T Consensus 455 gaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkV 534 (888)
T KOG0306|consen 455 GAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKV 534 (888)
T ss_pred cceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEE
Confidence 4556788899998777655 77887765433222222222221 1356899999999998 566778999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cE
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RY 156 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 156 (183)
|-+.+-+. ...+.+|.-+|.|+..+| ++.+++||+.|..|++|-+.=+.+ -..+.+|.+.|.++.|.|. ..
T Consensus 535 yflDtlKF------flsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDC-HKS~fAHdDSvm~V~F~P~~~~ 606 (888)
T KOG0306|consen 535 YFLDTLKF------FLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDC-HKSFFAHDDSVMSVQFLPKTHL 606 (888)
T ss_pred EEecceee------eeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccchh-hhhhhcccCceeEEEEccccee
Confidence 99988765 667889999999999999 899999999999999999998887 6678899999999999987 78
Q ss_pred EEEecCCCcEEEEEecCCCC
Q psy2113 157 IMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~~~~ 176 (183)
+++++.|+.|+.||-..-+.
T Consensus 607 FFt~gKD~kvKqWDg~kFe~ 626 (888)
T KOG0306|consen 607 FFTCGKDGKVKQWDGEKFEE 626 (888)
T ss_pred EEEecCcceEEeechhhhhh
Confidence 89999999999999766544
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.4e-16 Score=106.64 Aligned_cols=155 Identities=21% Similarity=0.243 Sum_probs=121.9
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEc-cCCeEEEEeC--CCeEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWT-AVDEIITSSW--DHTLKI 77 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~--d~~v~v 77 (183)
.++.-..++.|+++|..+.+.. +.+| +...++.+.++..++-.+..++|. ++..++.++. |.+|+.
T Consensus 12 ~~~~~i~sl~fs~~G~~litss~dDsl~LY-------d~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 12 ETNGKINSLDFSDDGLLLITSSEDDSLRLY-------DSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY 84 (311)
T ss_pred cCCCceeEEEecCCCCEEEEecCCCeEEEE-------EcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence 3566778999999999988854 5555 556778888888888889999997 5556665555 899999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cE
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RY 156 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 156 (183)
-++.+++. ++.+.+|...|.+++.+| .+..+++++.|++|++||++..+++. .+.-.. -...+|.|. -+
T Consensus 85 Lsl~dNky------lRYF~GH~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg-~l~~~~--~pi~AfDp~GLi 154 (311)
T KOG1446|consen 85 LSLHDNKY------LRYFPGHKKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQG-LLNLSG--RPIAAFDPEGLI 154 (311)
T ss_pred EEeecCce------EEEcCCCCceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCce-EEecCC--CcceeECCCCcE
Confidence 99998886 788999999999999999 77899999999999999999877633 332222 234689977 45
Q ss_pred EEEecCCCcEEEEEecCCCC
Q psy2113 157 IMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~~~~ 176 (183)
+|++.....|++||+|..++
T Consensus 155 fA~~~~~~~IkLyD~Rs~dk 174 (311)
T KOG1446|consen 155 FALANGSELIKLYDLRSFDK 174 (311)
T ss_pred EEEecCCCeEEEEEecccCC
Confidence 56666666999999998743
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-18 Score=128.07 Aligned_cols=133 Identities=26% Similarity=0.444 Sum_probs=115.8
Q ss_pred cCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEE
Q psy2113 40 LQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118 (183)
Q Consensus 40 ~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 118 (183)
.....+..+.+|..+|.++.|+... .+++|+.+|+|++||++..+. .+.+.+|...+.++.|+| -+.+.++|
T Consensus 58 ~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~------vrtLtgh~~~~~sv~f~P-~~~~~a~g 130 (825)
T KOG0267|consen 58 GKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKI------VRTLTGHLLNITSVDFHP-YGEFFASG 130 (825)
T ss_pred cCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhh------hhhhhccccCcceeeecc-ceEEeccc
Confidence 3444556689999999999999654 588999999999999997765 668999999999999999 77888999
Q ss_pred eCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCCCCc
Q psy2113 119 SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKSGQK 180 (183)
Q Consensus 119 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 180 (183)
+.|..+++||.+...+ .+.+.+|...|..++|+|+ .++++|+.|..++|||+..++...+.
T Consensus 131 Stdtd~~iwD~Rk~Gc-~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef 192 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGC-SHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEF 192 (825)
T ss_pred cccccceehhhhccCc-eeeecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccc
Confidence 9999999999997666 7888899999999999987 69999999999999999888776543
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-17 Score=108.62 Aligned_cols=162 Identities=21% Similarity=0.191 Sum_probs=114.2
Q ss_pred EEEEeecCcEEEEEE----eccCCCCcc---cccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCC
Q psy2113 12 GVIFMTVGALLTLTN----IEVTSLPSF---FQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~ 84 (183)
+-+++|.+.++.+++ +.+.++... .....-+.++-..++|.++|+.++|. +..|++|+ ||.|+-|..+...
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~-d~~Lls~g-dG~V~gw~W~E~~ 92 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH-DDFLLSGG-DGLVYGWEWNEEE 92 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee-hhheeecc-CceEEEeeehhhh
Confidence 456788888888776 333333322 21223344566778999999999998 44566655 5999999875432
Q ss_pred Ccc-------CceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcE
Q psy2113 85 MKK-------GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRY 156 (183)
Q Consensus 85 ~~~-------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~ 156 (183)
... ...+.+.-...-..|+++...| .++-++.++.|+.++-||+++++. ...+++|.+.|.++.-. ....
T Consensus 93 es~~~K~lwe~~~P~~~~~~evPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i-~r~~rGHtDYvH~vv~R~~~~q 170 (325)
T KOG0649|consen 93 ESLATKRLWEVKIPMQVDAVEVPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRI-QREYRGHTDYVHSVVGRNANGQ 170 (325)
T ss_pred hhccchhhhhhcCccccCcccCCccceeEecc-CCCcEEEecCCeEEEEEEecCCEE-EEEEcCCcceeeeeeecccCcc
Confidence 211 1111111111234588999999 555555555899999999999987 78999999999999985 4589
Q ss_pred EEEecCCCcEEEEEecCCCCC
Q psy2113 157 IMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+++|+.||++|+||.++++..
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v 191 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHV 191 (325)
T ss_pred eeecCCCccEEEEecccccee
Confidence 999999999999999998754
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=115.64 Aligned_cols=159 Identities=23% Similarity=0.394 Sum_probs=128.6
Q ss_pred eeEEEEEee---cCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMT---VGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
.+..++|+| +|.++....-....+ ..+..++.=+.++.+|.+.|.+...+.+.. -++++.|-+.++||.-++.
T Consensus 16 pvvdl~~s~itp~g~flisa~kd~~pm---lr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgd 92 (334)
T KOG0278|consen 16 PVVDLAFSPITPDGYFLISASKDGKPM---LRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGD 92 (334)
T ss_pred ceeEEeccCCCCCceEEEEeccCCCch---hccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhh
Confidence 345677776 555555544322221 225567777899999999999998886654 6788999999999998876
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQD 163 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 163 (183)
. ++.+ .|+..|..++|+. +.++|++|+.+..+++||++..+.+...+.+|.+.|..+.|. .++.|++.+.|
T Consensus 93 e------lhsf-~hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd 164 (334)
T KOG0278|consen 93 E------LHSF-EHKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADD 164 (334)
T ss_pred h------hhhh-hhhheeeeEEecc-cchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccC
Confidence 5 4444 4888999999999 888999999999999999999988888999999999999998 55888999999
Q ss_pred CcEEEEEecCCCCCC
Q psy2113 164 NSVRVFKTKHQPKSG 178 (183)
Q Consensus 164 g~i~iwd~~~~~~~~ 178 (183)
++||+||.+++....
T Consensus 165 ~tVRLWD~rTgt~v~ 179 (334)
T KOG0278|consen 165 KTVRLWDHRTGTEVQ 179 (334)
T ss_pred CceEEEEeccCcEEE
Confidence 999999999987543
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-16 Score=116.27 Aligned_cols=156 Identities=15% Similarity=0.288 Sum_probs=126.5
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccC-CCeeEEEEccCCeEEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHK-EAISAVQWTAVDEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~ 83 (183)
...++||+.....+|++. +++|++... .-....+.++. ..|.+++|+++++|.+.+.+|.|.-||+.+.
T Consensus 27 ~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~------w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 27 EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN------WFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred ceEEEEEeccCCceeeeccCCcEEEEccCCC------ceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccC
Confidence 456889999999988865 888886542 22334455554 5799999999999999999999999999987
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcce-EEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL-FDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
+. ...+..-.+.|++++.+| .+..++.|+.||.+..++...+.... ..+....+.|.++.|++. ..+++|+
T Consensus 101 k~------~~~~d~~gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 101 KQ------KYNIDSNGGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred ce------eEEecCCCcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 76 556677788999999999 88899999999988888888776422 234556689999999976 6699999
Q ss_pred CCCcEEEEEecCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKS 177 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~ 177 (183)
.||.|++||...+...
T Consensus 174 ~Dg~Iriwd~~~~~t~ 189 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTL 189 (691)
T ss_pred cCceEEEEEcCCCceE
Confidence 9999999999887643
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-17 Score=112.78 Aligned_cols=120 Identities=25% Similarity=0.499 Sum_probs=103.3
Q ss_pred ccCCCeeEEEEc---cC-Ce-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeE
Q psy2113 50 GHKEAISAVQWT---AV-DE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 124 (183)
Q Consensus 50 ~h~~~v~~~~~~---~~-~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 124 (183)
.|.+..+.++|+ .. +. +++++.-|.|+|.|+...+. ...+.+|...|+.+.++|...+++++++.|..|
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~------~~~~~ghG~sINeik~~p~~~qlvls~SkD~sv 160 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC------SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSV 160 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh------ccceeccCccchhhhcCCCCCcEEEEecCCceE
Confidence 467788999998 22 33 78888999999999988876 557889999999999999888999999999999
Q ss_pred EEEeCCCCCcceEE---eccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCC
Q psy2113 125 KLWDLRSPKVPLFD---MLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 125 ~vwd~~~~~~~~~~---~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
++|++++..+ +.. ..+|.+.|.+++|+ ++.+|++++.|.+|.+|++..++.
T Consensus 161 RlwnI~~~~C-v~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f 215 (385)
T KOG1034|consen 161 RLWNIQTDVC-VAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEF 215 (385)
T ss_pred EEEeccCCeE-EEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHH
Confidence 9999999887 444 45899999999999 558999999999999999985543
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-16 Score=112.03 Aligned_cols=152 Identities=22% Similarity=0.263 Sum_probs=113.7
Q ss_pred eeEEEEEeecCcEEEEEE-eccCCCCcccccccCccceEEEecc--CCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN-IEVTSLPSFFQLILQKTPLITLKGH--KEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
.+.++..+|.|.++.... -..|-+. +...+..+...... .=.+++.+|+|+|. |.+|..|+.+++||+.+..
T Consensus 305 ~V~~ls~h~tgeYllsAs~d~~w~Fs----d~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~ 380 (506)
T KOG0289|consen 305 PVTGLSLHPTGEYLLSASNDGTWAFS----DISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQT 380 (506)
T ss_pred cceeeeeccCCcEEEEecCCceEEEE----EccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCcc
Confidence 456778888888776655 3334332 33344444443322 12489999999998 6789999999999998776
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcEEEEecCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYIMSGGQD 163 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d 163 (183)
. ...+.+|.++|..++|+. +|.++++++.|+.|++||+|..+..........-.+.++.|.+ +.+++.++.|
T Consensus 381 ~------~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 381 N------VAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred c------cccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce
Confidence 4 668899999999999999 8999999999999999999987752222223334799999995 5899998877
Q ss_pred CcEEEEEe
Q psy2113 164 NSVRVFKT 171 (183)
Q Consensus 164 g~i~iwd~ 171 (183)
=+|++++-
T Consensus 454 l~Vy~~~k 461 (506)
T KOG0289|consen 454 LQVYICKK 461 (506)
T ss_pred eEEEEEec
Confidence 77777663
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.7e-17 Score=110.51 Aligned_cols=152 Identities=18% Similarity=0.302 Sum_probs=109.7
Q ss_pred eccCCCCccccc--ccCccceEEEe-ccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceE
Q psy2113 27 IEVTSLPSFFQL--ILQKTPLITLK-GHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ 103 (183)
Q Consensus 27 ~~~~~~~~~~~~--~~~~~~~~~~~-~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~ 103 (183)
..+|.++..... ..+.+.+..+. .+-+.|.|+.|.|++.-+++-.|..|.+|++.................+....+
T Consensus 95 aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ft 174 (370)
T KOG1007|consen 95 AAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFT 174 (370)
T ss_pred EEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccceec
Confidence 445666653222 22344555565 567799999999986644444599999999987654221111112223566788
Q ss_pred EEEEec-CCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCCCCCC
Q psy2113 104 SVRWSP-IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 104 ~~~~~p-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 179 (183)
+-+|+| .+++.+++. .|+++..||+|+..+....-.+|...|..++|+|+ .+|++++.||.|+|||.|..+.+.+
T Consensus 175 sg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~ 252 (370)
T KOG1007|consen 175 SGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ 252 (370)
T ss_pred ccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc
Confidence 889998 456677766 48999999999987756667789999999999987 6899999999999999998877654
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.4e-16 Score=102.28 Aligned_cols=164 Identities=20% Similarity=0.283 Sum_probs=118.1
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCccccc------ccC--ccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEE
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQL------ILQ--KTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLK 76 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~--~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~ 76 (183)
.-+++|+|.|.+.+++. .++...|..... ... ....+.-+.|.++|+|.+|+|.|. +++|+.|.+|+
T Consensus 35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik 114 (350)
T KOG0641|consen 35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIK 114 (350)
T ss_pred eeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEE
Confidence 45789999999999876 333333322111 111 112334467899999999999987 78999999999
Q ss_pred EEEcCCCCCccCceeEEEeecCCcceEEEEEecC---CCCEEEEEe-CCCeEEEEeCCCCCcceEEeccCCCcEEEEEec
Q psy2113 77 IWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI---DPQLFVSAS-FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152 (183)
Q Consensus 77 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 152 (183)
+..+....+..... ...+..|.+.|..++|-.+ .+.++++++ .|..|++-|...+.. .+.+.+|.+-|..+---
T Consensus 115 ~l~fn~dt~~~~g~-dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghilalysw 192 (350)
T KOG0641|consen 115 VLPFNADTCNATGH-DLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHILALYSW 192 (350)
T ss_pred EEecccccccccCc-ceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEEEEEEe
Confidence 88776544322111 2356779999999999642 245666654 477888889988876 88899999999887544
Q ss_pred CCcEEEEecCCCcEEEEEecCCC
Q psy2113 153 DYRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 153 ~~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
.+-.+++|+.|.+|++||++-..
T Consensus 193 n~~m~~sgsqdktirfwdlrv~~ 215 (350)
T KOG0641|consen 193 NGAMFASGSQDKTIRFWDLRVNS 215 (350)
T ss_pred cCcEEEccCCCceEEEEeeeccc
Confidence 66789999999999999998654
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1e-16 Score=121.22 Aligned_cols=160 Identities=20% Similarity=0.339 Sum_probs=126.4
Q ss_pred ccceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEE---eccCCCeeEEEEccCCe-EEEEeCCCe
Q psy2113 3 TNKFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITL---KGHKEAISAVQWTAVDE-IITSSWDHT 74 (183)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~-l~s~~~d~~ 74 (183)
.++.++.+.+++.++.|.+..++. +..++ .+.+-....+ ..|.++|++++...-++ +++++.+|.
T Consensus 444 ~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fN-------mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gi 516 (910)
T KOG1539|consen 444 FKKDDINATAVCVSFCGNFVFIGYSKGTIDRFN-------MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGI 516 (910)
T ss_pred ccccCcceEEEEEeccCceEEEeccCCeEEEEE-------cccCeeecccccCccccCceeEEEecCCCceEEEccCcce
Confidence 356788999999999999988754 55553 3445555555 58999999999986555 899999999
Q ss_pred EEEEEcCCCCCc-----------------------------------cCceeEEEeecCCcceEEEEEecCCCCEEEEEe
Q psy2113 75 LKIWDAELGGMK-----------------------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS 119 (183)
Q Consensus 75 v~vwd~~~~~~~-----------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 119 (183)
+.+||....... .+....+.+.+|...|++++|+| +++.+++++
T Consensus 517 lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisas 595 (910)
T KOG1539|consen 517 LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISAS 595 (910)
T ss_pred EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEee
Confidence 999998765422 11223345678999999999999 999999999
Q ss_pred CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCC-CcEEEEEec
Q psy2113 120 FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQD-NSVRVFKTK 172 (183)
Q Consensus 120 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d-g~i~iwd~~ 172 (183)
.|++|++||+.++.. + ....-..+++.+.|+|+ ++|++...| .-|++|-=+
T Consensus 596 mD~tIr~wDlpt~~l-I-D~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk 648 (910)
T KOG1539|consen 596 MDSTIRTWDLPTGTL-I-DGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK 648 (910)
T ss_pred cCCcEEEEeccCcce-e-eeEecCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence 999999999999875 3 33345678899999976 999999998 569999643
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.7e-16 Score=105.86 Aligned_cols=154 Identities=19% Similarity=0.305 Sum_probs=122.2
Q ss_pred ccceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEE
Q psy2113 3 TNKFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKI 77 (183)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~v 77 (183)
..+|......+.|+.++.++...+ +++.+ ....++++.+++|.....||+|+|.|+ |++|+.|..+.+
T Consensus 143 ~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILs-------ypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSL 215 (313)
T KOG1407|consen 143 EEQFKFEVNEISWNNSNDLFFLTNGLGCVEILS-------YPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSL 215 (313)
T ss_pred hhcccceeeeeeecCCCCEEEEecCCceEEEEe-------ccccccccccccCCcceEEEEECCCCceEeeccccceeec
Confidence 346677778888887777665533 44332 236678899999999999999999987 999999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cE
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RY 156 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 156 (183)
||+...-+ .+.+..+.-+|..++|+. ++++|++++.|..|-+=+++++.. +..+ .+.++-..|+|+|. .+
T Consensus 216 WD~~ELiC------~R~isRldwpVRTlSFS~-dg~~lASaSEDh~IDIA~vetGd~-~~eI-~~~~~t~tVAWHPk~~L 286 (313)
T KOG1407|consen 216 WDVDELIC------ERCISRLDWPVRTLSFSH-DGRMLASASEDHFIDIAEVETGDR-VWEI-PCEGPTFTVAWHPKRPL 286 (313)
T ss_pred cChhHhhh------heeeccccCceEEEEecc-CcceeeccCccceEEeEecccCCe-EEEe-eccCCceeEEecCCCce
Confidence 99987665 567778899999999999 999999999999999999999986 5444 56788899999988 55
Q ss_pred EEEecCC---------CcEEEEEec
Q psy2113 157 IMSGGQD---------NSVRVFKTK 172 (183)
Q Consensus 157 l~~~~~d---------g~i~iwd~~ 172 (183)
|+-++.| |.+++|-+.
T Consensus 287 LAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 287 LAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred eeEEecCCCCccccccceeEEecCC
Confidence 5544443 456666543
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=115.77 Aligned_cols=130 Identities=23% Similarity=0.382 Sum_probs=110.3
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEE
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF 115 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 115 (183)
+.....|+..+.--.+.|.++.|+|... |++|+.|+.|.+||+++..+.. .+. -.-..+.|+|+| +...+
T Consensus 173 D~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~------KVi-~~mRTN~IswnP-eafnF 244 (433)
T KOG0268|consen 173 DEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLK------KVI-LTMRTNTICWNP-EAFNF 244 (433)
T ss_pred ccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccc------eee-eeccccceecCc-cccce
Confidence 3445567788888888999999998654 8888999999999999887633 211 123457899999 89999
Q ss_pred EEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 116 VSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 116 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
++|+.|..++.+|++....++....+|.+.|.+++|+|. +-+++|+.|.+|+||..+.+.
T Consensus 245 ~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~ 305 (433)
T KOG0268|consen 245 VAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH 305 (433)
T ss_pred eeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc
Confidence 999999999999999988889999999999999999975 899999999999999988654
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=118.95 Aligned_cols=166 Identities=16% Similarity=0.241 Sum_probs=128.0
Q ss_pred cceeceeEEEEEeecCcEEEEEEec--cCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 4 NKFGILTLGVIFMTVGALLTLTNIE--VTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
++.|....+++.+|++.+++..+-. .-......++......++.+.+|.-.|+.++|+|+++ |++.+.|+++.+|..
T Consensus 522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~ 601 (764)
T KOG1063|consen 522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV 601 (764)
T ss_pred ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence 4678899999999999999987611 0111112225556667778999999999999999987 889999999999998
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC--CcceE-EeccCCCcEEEEEecC----
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP--KVPLF-DMLGHEDKVMCVNWSD---- 153 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~--~~~~~-~~~~~~~~v~~~~~~~---- 153 (183)
....... ......+.|..-|.+..|+| ++.+++|++.|.+|++|...+. +.... ....+...|+.++|.+
T Consensus 602 ~~~~~~e--~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~ 678 (764)
T KOG1063|consen 602 QEDIKDE--FRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHN 678 (764)
T ss_pred ecccchh--hhhccccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccc
Confidence 5433211 01223678999999999999 8889999999999999999876 33222 4557888999999974
Q ss_pred C--cEEEEecCCCcEEEEEec
Q psy2113 154 Y--RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 154 ~--~~l~~~~~dg~i~iwd~~ 172 (183)
+ ..++.|-..|.|.+|...
T Consensus 679 e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 679 EKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred cccceEEEEecccEEEEEecc
Confidence 1 377899999999999965
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.2e-17 Score=109.40 Aligned_cols=159 Identities=21% Similarity=0.340 Sum_probs=119.3
Q ss_pred eeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEcc--CCeEEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA--VDEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~~~d~~v~vwd~~~~ 83 (183)
-...+.|.|++..++... +-+|++.....- ....+...-..|....++-+|+| ++..+....|+++..||+++.
T Consensus 125 ~i~cvew~Pns~klasm~dn~i~l~~l~ess~~-vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~ 203 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDNNIVLWSLDESSKI-VAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTM 203 (370)
T ss_pred ceeeEEEcCCCCeeEEeccCceEEEEcccCcch-heeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccch
Confidence 345678999988877654 445554321100 00000111122566788899997 455777778999999999975
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEec
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGG 161 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~ 161 (183)
... ...-..|...|..+.|+|+...+|++|+.||.|++||.|..+.++..+.+|...|++|+|+|. +++++|+
T Consensus 204 ~~~-----~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~ 278 (370)
T KOG1007|consen 204 KKN-----NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGG 278 (370)
T ss_pred hhh-----cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecC
Confidence 542 222346888899999999777799999999999999999999899999999999999999964 8999999
Q ss_pred CCCcEEEEEecC
Q psy2113 162 QDNSVRVFKTKH 173 (183)
Q Consensus 162 ~dg~i~iwd~~~ 173 (183)
.|..|.+|....
T Consensus 279 SDs~V~Lsca~s 290 (370)
T KOG1007|consen 279 SDSAVNLSCASS 290 (370)
T ss_pred CCceeEEEeccc
Confidence 999999998654
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-18 Score=115.60 Aligned_cols=150 Identities=21% Similarity=0.335 Sum_probs=126.8
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEe-ccCCCeeEEEEccC-CeEEEEeCCCeEEEEEcCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLK-GHKEAISAVQWTAV-DEIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~ 82 (183)
.++.+.|+.+..+++.+. +++|. ..++.++..+. +|...|+++.|+.+ .++++++.|.++++.-+.+
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWr-------i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKS 337 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWR-------IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKS 337 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEE-------EecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEecccc
Confidence 567788999999999876 88885 45677777776 89999999999965 4599999999999999999
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec--cCCCcEEEEEecCC--cEEE
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML--GHEDKVMCVNWSDY--RYIM 158 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~--~~l~ 158 (183)
+++ ...+++|...|+...|.+ ++..+++++.||+|++|+..+.++ +.+++ +..-+|+.+...|. .+++
T Consensus 338 GK~------LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC-~~Tfk~~~~d~~vnsv~~~PKnpeh~i 409 (508)
T KOG0275|consen 338 GKC------LKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTEC-LSTFKPLGTDYPVNSVILLPKNPEHFI 409 (508)
T ss_pred chh------HHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhh-hhhccCCCCcccceeEEEcCCCCceEE
Confidence 887 668999999999999999 899999999999999999999887 55554 34457888877754 7888
Q ss_pred EecCCCcEEEEEecC
Q psy2113 159 SGGQDNSVRVFKTKH 173 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~ 173 (183)
.+....+|.|-++..
T Consensus 410 VCNrsntv~imn~qG 424 (508)
T KOG0275|consen 410 VCNRSNTVYIMNMQG 424 (508)
T ss_pred EEcCCCeEEEEeccc
Confidence 889999999988654
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1e-15 Score=104.31 Aligned_cols=164 Identities=20% Similarity=0.330 Sum_probs=125.9
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEc-cC-Ce-EEEEeCCCeEEEEEc
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWT-AV-DE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~-~~-l~s~~~d~~v~vwd~ 80 (183)
-++..+.|.+-|+.++++. +++|+... +..+.......+.|.++|..+.|. |. |+ +++++.|+++.||.-
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~---~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE 90 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTS---DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEE 90 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccC---CCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeee
Confidence 4677888999999998876 77776522 445566777889999999999998 43 55 889999999999986
Q ss_pred CCCCC---ccCceeEEEeecCCcceEEEEEecCC-CCEEEEEeCCCeEEEEeCCCCCc----------------------
Q psy2113 81 ELGGM---KKGAIVKSTFSSHKEWVQSVRWSPID-PQLFVSASFDNSVKLWDLRSPKV---------------------- 134 (183)
Q Consensus 81 ~~~~~---~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~vwd~~~~~~---------------------- 134 (183)
..... .........+......|+.+.|.|.. +-.+++++.||.+++|+..+...
T Consensus 91 ~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~ 170 (361)
T KOG2445|consen 91 QEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQ 170 (361)
T ss_pred cccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccC
Confidence 43222 12344556677788899999999842 45789999999999997754321
Q ss_pred --------------------------------------------ceEEeccCCCcEEEEEecCC-----cEEEEecCCCc
Q psy2113 135 --------------------------------------------PLFDMLGHEDKVMCVNWSDY-----RYIMSGGQDNS 165 (183)
Q Consensus 135 --------------------------------------------~~~~~~~~~~~v~~~~~~~~-----~~l~~~~~dg~ 165 (183)
.+..+.+|.++|++++|.|+ ..|++++.||
T Consensus 171 ~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg- 249 (361)
T KOG2445|consen 171 PCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG- 249 (361)
T ss_pred cceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-
Confidence 23345588899999999975 6889999999
Q ss_pred EEEEEecCCC
Q psy2113 166 VRVFKTKHQP 175 (183)
Q Consensus 166 i~iwd~~~~~ 175 (183)
|+||+++...
T Consensus 250 v~I~~v~~~~ 259 (361)
T KOG2445|consen 250 VRIFKVKVAR 259 (361)
T ss_pred EEEEEEeecc
Confidence 9999998543
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-17 Score=113.64 Aligned_cols=162 Identities=19% Similarity=0.266 Sum_probs=121.2
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
.+..+.|+|-..+++.+. ++.+++. ....+.-...-....+|.++.|+|.|. ++.|..-.++++||+.+.
T Consensus 174 evn~l~FHPre~ILiS~srD~tvKlFDfs-----K~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 174 EVNDLDFHPRETILISGSRDNTVKLFDFS-----KTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred cccceeecchhheEEeccCCCeEEEEecc-----cHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccce
Confidence 456789999999888765 4444322 111122122223556899999999987 567777789999999886
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCC-CcEEEEEec-CCcEEEEec
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHE-DKVMCVNWS-DYRYIMSGG 161 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~ 161 (183)
++-.... .-..|.+.|+++.+++ .+++.++++.||.|++||--..++.-..-..|. ..|.+..|. +++++++.+
T Consensus 249 Qcfvsan---Pd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG 324 (430)
T KOG0640|consen 249 QCFVSAN---PDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG 324 (430)
T ss_pred eEeeecC---cccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC
Confidence 6522111 2246899999999999 899999999999999999988887334445665 578899999 559999999
Q ss_pred CCCcEEEEEecCCCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~~~ 179 (183)
.|..+++|.+.+++...+
T Consensus 325 ~DS~vkLWEi~t~R~l~~ 342 (430)
T KOG0640|consen 325 KDSTVKLWEISTGRMLKE 342 (430)
T ss_pred CcceeeeeeecCCceEEE
Confidence 999999999998876544
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=109.49 Aligned_cols=159 Identities=20% Similarity=0.262 Sum_probs=120.7
Q ss_pred eEEEEEeecCcEEEEEE---eccCCCCcccccccCcc-ceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEEEEcCCC
Q psy2113 10 TLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKT-PLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vwd~~~~ 83 (183)
..++.|+|||..+.++. +++++..........-. ....-.+..+-|.+++|+|.. .++.|+...++-|+.-...
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 45889999999988876 77776543222111111 111123457788999999764 4888888888888887665
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CCeEEEEeCCCCCcceEEeccCCC-cEEEEEec--C-CcEEE
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DNSVKLWDLRSPKVPLFDMLGHED-KVMCVNWS--D-YRYIM 158 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~--~-~~~l~ 158 (183)
.+ ...+.+|.+.|+.++|++ +++.|.+|.. |-.|..||+|..+.++..+..|.. .-..|-|. | +++|+
T Consensus 241 ~p------l~llggh~gGvThL~~~e-dGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~La 313 (406)
T KOG2919|consen 241 RP------LQLLGGHGGGVTHLQWCE-DGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILA 313 (406)
T ss_pred Cc------eeeecccCCCeeeEEecc-CcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceee
Confidence 54 667789999999999999 7888888875 679999999998877888888876 56677777 4 38999
Q ss_pred EecCCCcEEEEEecCCC
Q psy2113 159 SGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~ 175 (183)
+|+.||.|++||++...
T Consensus 314 sG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 314 SGDTDGSVRVWDLKDLG 330 (406)
T ss_pred ccCCCccEEEEecCCCC
Confidence 99999999999998843
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=8e-17 Score=110.28 Aligned_cols=132 Identities=23% Similarity=0.428 Sum_probs=92.1
Q ss_pred eEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCc-------------------------------cCce--
Q psy2113 45 LITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMK-------------------------------KGAI-- 90 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~-------------------------------~~~~-- 90 (183)
+..+++|.+.|++++|+.+|+ |++++.|+.|++|+++.-... ....
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 557789999999999998876 999999999999998752211 0000
Q ss_pred e-----------------E---EEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc----------------
Q psy2113 91 V-----------------K---STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV---------------- 134 (183)
Q Consensus 91 ~-----------------~---~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~---------------- 134 (183)
. . ..-..|...+..+-..- ++.+|++++.|..|.+|+++....
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~-~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavS 237 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG-NAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVS 237 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhcccceEEEeecC-CceEEEEecCCCcEEEEecCCceeeeeccccccccceeeC
Confidence 0 0 00011223333444433 556777788888888887762111
Q ss_pred --------------------------------ceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 135 --------------------------------PLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 135 --------------------------------~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
.+..+.+|.+.|...+|+++ ..+++.+.||++++||..-.-+.
T Consensus 238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 35667899999999999976 89999999999999997654333
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=117.73 Aligned_cols=118 Identities=32% Similarity=0.562 Sum_probs=102.8
Q ss_pred cceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 43 TPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
+....+++|..+|.+++.-|.+.+++|+.|.+|++|.-. +. ...+.+|..-|..+++-| + ..+++++.||
T Consensus 131 ~l~~~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~~--~~------l~tf~gHtD~VRgL~vl~-~-~~flScsNDg 200 (745)
T KOG0301|consen 131 ELVYSLQGHTASVWAVASLPENTYVTGSADKTIKLWKGG--TL------LKTFSGHTDCVRGLAVLD-D-SHFLSCSNDG 200 (745)
T ss_pred hhhcccCCcchheeeeeecCCCcEEeccCcceeeeccCC--ch------hhhhccchhheeeeEEec-C-CCeEeecCCc
Confidence 344568999999999999999999999999999999863 22 568899999999999987 3 3689999999
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEec
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~ 172 (183)
.|++|++ ++.+ +....+|..-|+++... ++..+++++.|++++||+..
T Consensus 201 ~Ir~w~~-~ge~-l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 201 SIRLWDL-DGEV-LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred eEEEEec-cCce-eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 9999999 5555 78899999999999955 67999999999999999966
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=6.3e-17 Score=119.74 Aligned_cols=162 Identities=21% Similarity=0.386 Sum_probs=129.6
Q ss_pred eeceeEEEEEeecC-cEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEE
Q psy2113 6 FGILTLGVIFMTVG-ALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIW 78 (183)
Q Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vw 78 (183)
-|-++..+.|.|.. ..++++. +++|.+...........+...+..|.+.|+++.|+|- +.|++++.|.+|++|
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeee
Confidence 35677888999844 4455543 8999988877677777888899999999999999975 569999999999999
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCC-CcEEEEEec-CCcE
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHE-DKVMCVNWS-DYRY 156 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~ 156 (183)
|+++... ...+.+|.+.|..++|+| +++.+++.+.||+++||+.+....++..-.+.. ..--.+.|. ++.+
T Consensus 706 Dl~~~~~------~~~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 706 DLANAKL------YSRLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRI 778 (1012)
T ss_pred ehhhhhh------hheeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence 9998776 667899999999999999 999999999999999999998887665544432 234567787 6677
Q ss_pred EEEecCC----CcEEEEEecCC
Q psy2113 157 IMSGGQD----NSVRVFKTKHQ 174 (183)
Q Consensus 157 l~~~~~d----g~i~iwd~~~~ 174 (183)
+++.+.| ++|.+||..+-
T Consensus 779 viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 779 VIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred EEEecccccchhhhhhhhhhhc
Confidence 7766554 45778876543
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-16 Score=109.44 Aligned_cols=133 Identities=21% Similarity=0.303 Sum_probs=105.0
Q ss_pred cccCccceEEEeccCCCeeEEEEccC---CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCC-cceEEEEEecCCCC
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAV---DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK-EWVQSVRWSPIDPQ 113 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~ 113 (183)
+..++..+..++++...++.+.|... ..+.+|+.||+|++||+|...... ......++ .+..+++.+- ..+
T Consensus 56 d~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a----~~~~~~~~~~~f~~ld~nc-k~~ 130 (376)
T KOG1188|consen 56 DKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA----RISWTQQSGTPFICLDLNC-KKN 130 (376)
T ss_pred eccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh----heeccCCCCCcceEeeccC-cCC
Confidence 34457788899999999999999853 338899999999999999765432 33344454 5677888776 567
Q ss_pred EEEEEeC----CCeEEEEeCCCCCcc-eEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCC
Q psy2113 114 LFVSASF----DNSVKLWDLRSPKVP-LFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 114 ~l~~~~~----dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 175 (183)
++++|.. +-.+.+||+|..+.+ -.....|.+.|++++|+|. +.|++|+.||.|.+||++...
T Consensus 131 ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~ 199 (376)
T KOG1188|consen 131 IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN 199 (376)
T ss_pred eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence 8888753 568999999988763 3456789999999999965 899999999999999998763
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-16 Score=105.52 Aligned_cols=133 Identities=25% Similarity=0.456 Sum_probs=106.4
Q ss_pred cccCccceEEEeccCCCeeEEEEccC---Ce-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCC
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAV---DE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQ 113 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~---~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 113 (183)
+..+.+....|+ ..+.|++-+++|- .. +++|..+-.|++-|+.++.. .+.+.+|...|.++.|+|..+-
T Consensus 130 DtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~------sH~LsGHr~~vlaV~Wsp~~e~ 202 (397)
T KOG4283|consen 130 DTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF------SHTLSGHRDGVLAVEWSPSSEW 202 (397)
T ss_pred ecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc------eeeeccccCceEEEEeccCcee
Confidence 344444444554 5678888888864 23 67888999999999999887 7789999999999999997777
Q ss_pred EEEEEeCCCeEEEEeCCCCC-------------cc-eEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 114 LFVSASFDNSVKLWDLRSPK-------------VP-LFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 114 ~l~~~~~dg~i~vwd~~~~~-------------~~-~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
.|++|+.||.|++||++... .+ +..-..|.+.|+.++|. ++.++++++.|..+++|+..+++..
T Consensus 203 vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt 281 (397)
T KOG4283|consen 203 VLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT 281 (397)
T ss_pred EEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc
Confidence 89999999999999998542 11 12245788999999999 5599999999999999998887643
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-16 Score=112.88 Aligned_cols=160 Identities=23% Similarity=0.330 Sum_probs=122.1
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCccccc---cc-------CccceEEE-eccCCCeeEEEEccCCe-EEEEe
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQL---IL-------QKTPLITL-KGHKEAISAVQWTAVDE-IITSS 70 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~-------~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~~ 70 (183)
-..+.+++++|+........ +--|.+...... .. ...+...- ++|...+.+++.+++++ |++|+
T Consensus 142 ~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylatgg 221 (479)
T KOG0299|consen 142 QLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLATGG 221 (479)
T ss_pred cCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEecC
Confidence 34677888889876655433 222333322110 00 11122222 48999999999999887 88999
Q ss_pred CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEE
Q psy2113 71 WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN 150 (183)
Q Consensus 71 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 150 (183)
.|..|.||+.++.+. ...+.+|.+.|.+++|-. +...+++++.|+.+++|++..... +.++.+|.+.|..+.
T Consensus 222 ~d~~v~Iw~~~t~eh------v~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 222 RDRHVQIWDCDTLEH------VKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGID 293 (479)
T ss_pred CCceEEEecCcccch------hhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeec
Confidence 999999999999886 557899999999999998 788999999999999999998765 778899999999998
Q ss_pred ecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 151 WSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 151 ~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
-..- ..+-+|+.|+++++|++...
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~ee 318 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPEE 318 (479)
T ss_pred hhcccceEEeccccceeEEEecccc
Confidence 7754 55556669999999999543
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=112.54 Aligned_cols=161 Identities=19% Similarity=0.236 Sum_probs=120.4
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~ 82 (183)
....++.|.+++..+.+.. ..+| +........++.+|.+.|+++.|.... ..++|+.|.++++||+..
T Consensus 220 g~it~~d~d~~~~~~iAas~d~~~r~W-------nvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k 292 (459)
T KOG0288|consen 220 GNITSIDFDSDNKHVIAASNDKNLRLW-------NVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK 292 (459)
T ss_pred CCcceeeecCCCceEEeecCCCceeee-------eccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence 3467888999998776654 5567 455667788999999999999998443 488899999999999876
Q ss_pred CCCccCce---------------------------------eEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 83 GGMKKGAI---------------------------------VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 83 ~~~~~~~~---------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
..+.+... ...... -.+.|+++..++ ++..+++++.|.++.+.|+
T Consensus 293 ~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~-~gg~vtSl~ls~-~g~~lLsssRDdtl~viDl 370 (459)
T KOG0288|consen 293 AYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVP-LGGRVTSLDLSM-DGLELLSSSRDDTLKVIDL 370 (459)
T ss_pred hheeccccccccccceEecceeeeecccccceEEEeccCCceeeEee-cCcceeeEeecc-CCeEEeeecCCCceeeeec
Confidence 44331100 011111 234799999999 8888999999999999999
Q ss_pred CCCCcceEEeccC----CCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 130 RSPKVPLFDMLGH----EDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 130 ~~~~~~~~~~~~~----~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
++... ...+.+. ....+.+.|+|+ .|+++|+.||.|+||++.+++...
T Consensus 371 Rt~eI-~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 371 RTKEI-RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred ccccE-EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 98764 3333321 235789999987 899999999999999999887654
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-17 Score=112.13 Aligned_cols=155 Identities=26% Similarity=0.383 Sum_probs=111.7
Q ss_pred eEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 10 TLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
..++.|+|....+.++. +-+++ ..+..++..+. -...-+.|+|+|... |++|+.|..++.||++..
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD-------~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYD-------LRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEe-------cccCCccceee-eeccccceecCccccceeeccccccceehhhhhh
Confidence 34566777665544433 22232 22333333332 233457899999665 899999999999999875
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQ 162 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~ 162 (183)
.. +.....+|.+.|.++.|+| .|+-+++|+.|.+|++|..+.+...-......-..|.++.|+ +.+++++|+.
T Consensus 262 ~~-----p~~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 262 SR-----PLNVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred cc-----cchhhcccceeEEEeccCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC
Confidence 54 2556788999999999999 899999999999999999987642111112223579999999 5599999999
Q ss_pred CCcEEEEEecCCCCCC
Q psy2113 163 DNSVRVFKTKHQPKSG 178 (183)
Q Consensus 163 dg~i~iwd~~~~~~~~ 178 (183)
|+.|++|.....++.+
T Consensus 336 d~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 336 DGNVRLWKAKASEKLG 351 (433)
T ss_pred CcceeeeecchhhhcC
Confidence 9999999977766544
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=103.79 Aligned_cols=118 Identities=31% Similarity=0.516 Sum_probs=98.5
Q ss_pred eccCCCeeEEEEcc--CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCC--CCEEEEEeCCCeE
Q psy2113 49 KGHKEAISAVQWTA--VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID--PQLFVSASFDNSV 124 (183)
Q Consensus 49 ~~h~~~v~~~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i 124 (183)
.+|.-.|.++.|-| .|.+.+++.|.+++|||..+.+. ...+ .-.+.|.+-+++|-. ..++++|..|-.|
T Consensus 98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~------a~~F-~me~~VYshamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQE------AVDF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred ccceeeeeeeEEeeecCceeecccccceEEEeeccccee------eEEe-ecCceeehhhcChhhhcceEEEEecCCCcE
Confidence 45777899999986 46689999999999999987664 2233 356678888888843 3478888889999
Q ss_pred EEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCC
Q psy2113 125 KLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 125 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 174 (183)
++.|+..+.. .+.+.+|.+.|.++.|+|. -.|++|+.||.|++||++..
T Consensus 171 rLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRra 221 (397)
T KOG4283|consen 171 RLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRA 221 (397)
T ss_pred EEEeccCCcc-eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecc
Confidence 9999999987 8999999999999999976 57789999999999999865
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-16 Score=114.38 Aligned_cols=164 Identities=17% Similarity=0.275 Sum_probs=119.6
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC-CeEEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~~ 83 (183)
.+.++++.|.|..++.+. ++.|++.-........+.+.. .....|+++.|++. +.|++.+.....+|+|-...
T Consensus 169 ~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P--~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~ 246 (641)
T KOG0772|consen 169 IVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQP--CETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGF 246 (641)
T ss_pred EEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCc--ccccccceeeecCCCCeEEEEecCcceeEEccCCc
Confidence 577899999999998877 666766544333333333333 34457899999976 45888888889999996543
Q ss_pred CCc---c---CceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec-----cCCCcEEEEEec
Q psy2113 84 GMK---K---GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML-----GHEDKVMCVNWS 152 (183)
Q Consensus 84 ~~~---~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~v~~~~~~ 152 (183)
... + ...-....++|...++|.+|+|.....++|++.||++++||+.+.+.....+. +..-+++.++|+
T Consensus 247 ~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~n 326 (641)
T KOG0772|consen 247 EIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWN 326 (641)
T ss_pred eeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecC
Confidence 221 1 11112234689999999999998888999999999999999987764333332 334578999999
Q ss_pred CC-cEEEEecCCCcEEEEEecCC
Q psy2113 153 DY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 153 ~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
++ ..|++|+.||.|.+|+.+..
T Consensus 327 rdg~~iAagc~DGSIQ~W~~~~~ 349 (641)
T KOG0772|consen 327 RDGKLIAAGCLDGSIQIWDKGSR 349 (641)
T ss_pred CCcchhhhcccCCceeeeecCCc
Confidence 65 88999999999999997554
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.3e-16 Score=105.80 Aligned_cols=152 Identities=22% Similarity=0.293 Sum_probs=118.9
Q ss_pred EEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeE
Q psy2113 14 IFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVK 92 (183)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~ 92 (183)
.|...|..+.++. |+-....++.+++.++..+.+|....+.++-+|..+ .++.+.|.+.++||++.... ..
T Consensus 279 dWL~gg~Q~vTaS---WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~-----sV 350 (481)
T KOG0300|consen 279 DWLAGGQQMVTAS---WDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQ-----SV 350 (481)
T ss_pred hhhcCcceeeeee---ccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcc-----ee
Confidence 3444444444433 333333447788999999999999999999888877 57899999999999985433 26
Q ss_pred EEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEe
Q psy2113 93 STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 93 ~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~ 171 (183)
..+++|...|+++.|.. +..+++|+.|.+|++||+++.+.++..+.. .++++.++.+.+ ..|+.--.+..|++||+
T Consensus 351 ~VFQGHtdtVTS~vF~~--dd~vVSgSDDrTvKvWdLrNMRsplATIRt-dS~~NRvavs~g~~iIAiPhDNRqvRlfDl 427 (481)
T KOG0300|consen 351 AVFQGHTDTVTSVVFNT--DDRVVSGSDDRTVKVWDLRNMRSPLATIRT-DSPANRVAVSKGHPIIAIPHDNRQVRLFDL 427 (481)
T ss_pred eeecccccceeEEEEec--CCceeecCCCceEEEeeeccccCcceeeec-CCccceeEeecCCceEEeccCCceEEEEec
Confidence 67899999999999987 347999999999999999998877777654 568899999976 56666677788999998
Q ss_pred cCCCC
Q psy2113 172 KHQPK 176 (183)
Q Consensus 172 ~~~~~ 176 (183)
...+.
T Consensus 428 nG~Rl 432 (481)
T KOG0300|consen 428 NGNRL 432 (481)
T ss_pred CCCcc
Confidence 86543
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.4e-16 Score=106.08 Aligned_cols=153 Identities=19% Similarity=0.298 Sum_probs=122.7
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccC-ccceEEEeccCCCeeEEEEccC-CeEEEEeCCCeEEEEEcC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQ-KTPLITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAE 81 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~ 81 (183)
-....+||++++..+++.. +++|.. ...+ .++..+++.|...|++++|+|. ++|++|+.|..-+||...
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~-----~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~ 85 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSM-----LGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQP 85 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEe-----cCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccC
Confidence 3567889999999999875 444433 3333 6788899999999999999976 579999999999999984
Q ss_pred -CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC---cceEEeccCCCcEEEEEecCC-cE
Q psy2113 82 -LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK---VPLFDMLGHEDKVMCVNWSDY-RY 156 (183)
Q Consensus 82 -~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~-~~ 156 (183)
.+... +...+..+....+++.|+| .++.|++|+....|.||=.+... ...+....+.+.|++++|+|+ -+
T Consensus 86 ~~~~Wk----ptlvLlRiNrAAt~V~WsP-~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVL 160 (361)
T KOG1523|consen 86 SGGTWK----PTLVLLRINRAATCVKWSP-KENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVL 160 (361)
T ss_pred CCCeec----cceeEEEeccceeeEeecC-cCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcce
Confidence 33332 2445566889999999999 89999999999999999877543 124456778899999999966 78
Q ss_pred EEEecCCCcEEEEE
Q psy2113 157 IMSGGQDNSVRVFK 170 (183)
Q Consensus 157 l~~~~~dg~i~iwd 170 (183)
+++|+.|++.|++.
T Consensus 161 laaGs~D~k~rVfS 174 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFS 174 (361)
T ss_pred ecccccCcceeEEE
Confidence 88999999999986
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=111.34 Aligned_cols=165 Identities=21% Similarity=0.337 Sum_probs=126.6
Q ss_pred EEEEEeecCcEEEEEE----eccCCCCcc-cccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 11 LGVIFMTVGALLTLTN----IEVTSLPSF-FQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
-+++|.|....++.++ +++|.+..- .......+++.+|.+|.++|.|+++.+++. +++|+.||+|+.|++....
T Consensus 298 r~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~ 377 (577)
T KOG0642|consen 298 RALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQ 377 (577)
T ss_pred hhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCC
Confidence 3567888887777766 778887321 113445678999999999999999997765 9999999999999776322
Q ss_pred Cc----cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc--------------------------
Q psy2113 85 MK----KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV-------------------------- 134 (183)
Q Consensus 85 ~~----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~-------------------------- 134 (183)
-. ........+.+|...|+.+++++ ....|++++.||+++.|+......
T Consensus 378 dp~ds~dp~vl~~~l~Ghtdavw~l~~s~-~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~ 456 (577)
T KOG0642|consen 378 DPDDSYDPSVLSGTLLGHTDAVWLLALSS-TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSL 456 (577)
T ss_pred CcccccCcchhccceeccccceeeeeecc-cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhh
Confidence 11 11233556789999999999999 778899999999999998764322
Q ss_pred ------------------------------------------------------------------ceEEeccCCCcEEE
Q psy2113 135 ------------------------------------------------------------------PLFDMLGHEDKVMC 148 (183)
Q Consensus 135 ------------------------------------------------------------------~~~~~~~~~~~v~~ 148 (183)
+++....|...+++
T Consensus 457 ~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svts 536 (577)
T KOG0642|consen 457 ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTS 536 (577)
T ss_pred hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecc
Confidence 34444577788899
Q ss_pred EEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 149 VNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 149 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+++.|+ .+|++++.|+.+++|.+..+..
T Consensus 537 lai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 537 LAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eeecCCCceEEeecCCceeehhhccchhe
Confidence 999965 8999999999999999865543
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.2e-16 Score=112.62 Aligned_cols=124 Identities=22% Similarity=0.313 Sum_probs=102.3
Q ss_pred ceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 44 PLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
++..+.--.+.|+..+|+|+++ |++.+.||.+||||..+.+. +..++.--+...|++|+| ++.+|++|+.|.
T Consensus 282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eL------lg~mkSYFGGLLCvcWSP-DGKyIvtGGEDD 354 (636)
T KOG2394|consen 282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQEL------LGVMKSYFGGLLCVCWSP-DGKYIVTGGEDD 354 (636)
T ss_pred ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHH------HHHHHhhccceEEEEEcC-CccEEEecCCcc
Confidence 4444544566899999999887 88999999999999987654 333444456789999999 999999999999
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEecC-------------------------------------------------
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD------------------------------------------------- 153 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~------------------------------------------------- 153 (183)
.|.||.+...+. +..-++|.+.|..|+|.|
T Consensus 355 LVtVwSf~erRV-VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v 433 (636)
T KOG2394|consen 355 LVTVWSFEERRV-VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSV 433 (636)
T ss_pred eEEEEEeccceE-EEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccce
Confidence 999999999886 888999999999999981
Q ss_pred CcEEEEecCCCcEEEEEecCCC
Q psy2113 154 YRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 154 ~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
.-.|.+.+.|.++.+||+....
T Consensus 434 ~YRfGSVGqDTqlcLWDlteD~ 455 (636)
T KOG2394|consen 434 TYRFGSVGQDTQLCLWDLTEDV 455 (636)
T ss_pred EEEeecccccceEEEEecchhh
Confidence 0146788999999999987654
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=122.08 Aligned_cols=168 Identities=19% Similarity=0.322 Sum_probs=122.2
Q ss_pred EEEEEeecCcE----EEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEc
Q psy2113 11 LGVIFMTVGAL----LTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDA 80 (183)
Q Consensus 11 ~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~ 80 (183)
..++|.+.+.. ++++. +..|+..... .......+.+...|.+.|..++|++. +.|++|+.||.|.|||+
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~-~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl 146 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII-ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL 146 (1049)
T ss_pred eeeeecccCCCccceeeccccCCceEEecchhhc-cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc
Confidence 56677776655 44433 5556544331 12344557778889999999999954 35899999999999999
Q ss_pred CCCCCc---------------------------------------cCceeEEEeecCC--cceEEEEEecCCCCEEEEEe
Q psy2113 81 ELGGMK---------------------------------------KGAIVKSTFSSHK--EWVQSVRWSPIDPQLFVSAS 119 (183)
Q Consensus 81 ~~~~~~---------------------------------------~~~~~~~~~~~~~--~~v~~~~~~p~~~~~l~~~~ 119 (183)
...+.. +...++..+..+. ..+..+.|+|+....+++++
T Consensus 147 nn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As 226 (1049)
T KOG0307|consen 147 NKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS 226 (1049)
T ss_pred CCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec
Confidence 753221 1111111222222 34779999997778888887
Q ss_pred CCC---eEEEEeCCCCCcceEEeccCCCcEEEEEecC-C-cEEEEecCCCcEEEEEecCCCCCCC
Q psy2113 120 FDN---SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-Y-RYIMSGGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 120 ~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~~~~ 179 (183)
.|. .|.+||+|....++..+.+|...|.++.|++ + .++++++.|+.|.+|+.++++...+
T Consensus 227 ~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~ 291 (1049)
T KOG0307|consen 227 GDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGE 291 (1049)
T ss_pred CCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeee
Confidence 654 7999999988877888999999999999993 3 8999999999999999999776544
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-15 Score=103.02 Aligned_cols=113 Identities=19% Similarity=0.445 Sum_probs=96.9
Q ss_pred CCCeeEEEEccC-CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 52 KEAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 52 ~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
.+.|.++.|+|. +.|++++.||.+++||...... .....|..++.+++|.+ ...+++|+.||.|+++|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-------~~~~~~~~plL~c~F~d--~~~~~~G~~dg~vr~~Dln 83 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-------KLKFKHGAPLLDCAFAD--ESTIVTGGLDGQVRRYDLN 83 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-------hhheecCCceeeeeccC--CceEEEeccCceEEEEEec
Confidence 567999999965 4588889999999999987643 23345899999999986 5689999999999999999
Q ss_pred CCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 131 SPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
++. ...+..|..+|.++.+.+. +.+++|+.|++|++||.+...
T Consensus 84 ~~~--~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~ 127 (323)
T KOG1036|consen 84 TGN--EDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV 127 (323)
T ss_pred CCc--ceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc
Confidence 987 5778889999999999965 899999999999999999643
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.2e-16 Score=108.00 Aligned_cols=165 Identities=24% Similarity=0.367 Sum_probs=129.3
Q ss_pred ceeEEEEEeecCc-EEEEEE----eccCCCCcccccc--cCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 8 ILTLGVIFMTVGA-LLTLTN----IEVTSLPSFFQLI--LQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
-...++.|.+.+. .++.+. +++|.+....... ...+.+..+..|...|+++.|+|+|. |++|+.+|.+.+|.
T Consensus 14 ~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 14 EPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred CceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEE
Confidence 3456677777666 666544 7888776543322 24455677889999999999999876 78899999999998
Q ss_pred cCCCCC----------ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEE
Q psy2113 80 AELGGM----------KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCV 149 (183)
Q Consensus 80 ~~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 149 (183)
...-.. .+.......+.+|...+..++|+| +++++++++.|..+++||+..+.. ...+..|...|..+
T Consensus 94 ~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgv 171 (434)
T KOG1009|consen 94 QGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGV 171 (434)
T ss_pred ecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecccee-Eeecccccccccee
Confidence 762111 123445566788999999999999 899999999999999999999986 78889999999999
Q ss_pred EecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 150 NWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 150 ~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
+|.|- +++++-+.|...+.+.+...
T Consensus 172 awDpl~qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 172 AWDPLNQYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred ecchhhhhhhhhccCcccceeeeeee
Confidence 99975 89999899987777665544
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.8e-15 Score=101.52 Aligned_cols=155 Identities=16% Similarity=0.249 Sum_probs=114.6
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
...+.|++-|.+++.+. +-+|++ .+...-..+.+|..+|.+++|+++|+ |+++|.|..+.+||+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~-------~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDF-------DTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEc-------cccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC
Confidence 67788999999999987 444543 33445567889999999999998887 8999999999999998765
Q ss_pred CccC---------------------------ceeEEEeec--C-----------CcceEEEEEecCCCCEEEEEeCCCeE
Q psy2113 85 MKKG---------------------------AIVKSTFSS--H-----------KEWVQSVRWSPIDPQLFVSASFDNSV 124 (183)
Q Consensus 85 ~~~~---------------------------~~~~~~~~~--~-----------~~~v~~~~~~p~~~~~l~~~~~dg~i 124 (183)
+... ......+.. | .....+..|.+ .+.++++|...|.+
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkl 177 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKL 177 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC-CCCEEEEecCcceE
Confidence 4310 000001100 0 00111223566 68899999999999
Q ss_pred EEEeCCCCCcceEEeccCC-CcEEEEEec-CCcEEEEecCCCcEEEEEecC
Q psy2113 125 KLWDLRSPKVPLFDMLGHE-DKVMCVNWS-DYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 125 ~vwd~~~~~~~~~~~~~~~-~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 173 (183)
.++|..+.++ +..++-.. ..|..+.++ .+.+|+.-+.|+.||.|+++.
T Consensus 178 lv~~a~t~e~-vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 178 LVYDAETLEC-VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred EEEecchhee-eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 9999999876 66555544 688899998 568999999999999999874
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=112.11 Aligned_cols=137 Identities=22% Similarity=0.394 Sum_probs=108.6
Q ss_pred CccceEEEeccCCCeeEEEEcc--CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEE
Q psy2113 41 QKTPLITLKGHKEAISAVQWTA--VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 118 (183)
..+.+..+.+|.+.|+.+.|+| ++.|++|+.|..|+||.+..+-...-..+...+.+....|-++.|+|....+++++
T Consensus 68 ~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~ 147 (1012)
T KOG1445|consen 68 RTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASG 147 (1012)
T ss_pred cccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEec
Confidence 3446677889999999999995 56799999999999999973322111122334444566789999999555555555
Q ss_pred eCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCCCCC
Q psy2113 119 SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 119 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 179 (183)
..|.+++||+.+.+. ...+.+|.+.|.+..|+ ++..+++++.|..|+|||.+......+
T Consensus 148 -a~g~v~i~D~stqk~-~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ 207 (1012)
T KOG1445|consen 148 -AHGSVYITDISTQKT-AVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQ 207 (1012)
T ss_pred -cCceEEEEEcccCce-eecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccc
Confidence 579999999999886 88899999999999999 569999999999999999998766654
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=6.8e-17 Score=113.60 Aligned_cols=155 Identities=22% Similarity=0.341 Sum_probs=121.6
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
.+..+.|-+....++.+. ++.|+. .......+.++.+..++|++++|.++++ +++++.|+.+++|++...
T Consensus 177 ev~~v~~l~~sdtlatgg~Dr~Ik~W~v-----~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~ 251 (459)
T KOG0288|consen 177 EVHDVEFLRNSDTLATGGSDRIIKLWNV-----LGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL 251 (459)
T ss_pred ccceeEEccCcchhhhcchhhhhhhhhc-----ccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccch
Confidence 355677888766666655 777765 3334556788888999999999997665 889999999999999887
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQD 163 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 163 (183)
.. .+++.+|...|+++.|.. ....+++|+.|.+|+.||+....+....+. .+.+.+|... ...+++|..|
T Consensus 252 r~------~~TLsGHtdkVt~ak~~~-~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~--~S~cnDI~~~-~~~~~SgH~D 321 (459)
T KOG0288|consen 252 RL------RHTLSGHTDKVTAAKFKL-SHSRVVSGSADRTIKLWDLQKAYCSKTVLP--GSQCNDIVCS-ISDVISGHFD 321 (459)
T ss_pred hh------hhhhcccccceeeehhhc-cccceeeccccchhhhhhhhhhheeccccc--cccccceEec-ceeeeecccc
Confidence 76 778999999999999987 555599999999999999998765333333 3456666665 4678899999
Q ss_pred CcEEEEEecCCCCCC
Q psy2113 164 NSVRVFKTKHQPKSG 178 (183)
Q Consensus 164 g~i~iwd~~~~~~~~ 178 (183)
++|++||.+......
T Consensus 322 kkvRfwD~Rs~~~~~ 336 (459)
T KOG0288|consen 322 KKVRFWDIRSADKTR 336 (459)
T ss_pred cceEEEeccCCceee
Confidence 999999998876543
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.7e-16 Score=115.09 Aligned_cols=158 Identities=18% Similarity=0.272 Sum_probs=125.3
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEc-cC---CeEEEEeCCCeEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWT-AV---DEIITSSWDHTLK 76 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~---~~l~s~~~d~~v~ 76 (183)
+||+.+. +.+|+|..++.++ ++++++ ...+....+++|...|.|+.|+ |. ..|++++.|+.|+
T Consensus 459 r~G~R~~--~vSp~gqhLAsGDr~GnlrVy~L-------q~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIH 529 (1080)
T KOG1408|consen 459 RFGFRAL--AVSPDGQHLASGDRGGNLRVYDL-------QELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIH 529 (1080)
T ss_pred ccceEEE--EECCCcceecccCccCceEEEEe-------hhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEE
Confidence 6777655 5789999999876 777743 4555667788999999999998 43 2378899999999
Q ss_pred EEEcCCCCCc----------------------------------------------------------------------
Q psy2113 77 IWDAELGGMK---------------------------------------------------------------------- 86 (183)
Q Consensus 77 vwd~~~~~~~---------------------------------------------------------------------- 86 (183)
|||....-..
T Consensus 530 V~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k 609 (1080)
T KOG1408|consen 530 VYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK 609 (1080)
T ss_pred EEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc
Confidence 9997542111
Q ss_pred ----------------cCceeEEEe---ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEE
Q psy2113 87 ----------------KGAIVKSTF---SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVM 147 (183)
Q Consensus 87 ----------------~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 147 (183)
...+....+ .+|.+....+...| .+.++++.+.|.++.++|.-++++ +....+|...|+
T Consensus 610 ~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEc-vA~m~GHsE~VT 687 (1080)
T KOG1408|consen 610 LVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGEC-VAQMTGHSEAVT 687 (1080)
T ss_pred eEEEEecccceEEEeccccceeeeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchh-hhhhcCcchhee
Confidence 111112223 34667788899999 899999999999999999999998 888899999999
Q ss_pred EEEecCC-cEEEEecCCCcEEEEEecC
Q psy2113 148 CVNWSDY-RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 148 ~~~~~~~-~~l~~~~~dg~i~iwd~~~ 173 (183)
.+.|.++ ++|++.+.||.|.||.+..
T Consensus 688 G~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 688 GVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeeecccchhheeecCCceEEEEECch
Confidence 9999977 9999999999999999765
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=102.98 Aligned_cols=90 Identities=23% Similarity=0.411 Sum_probs=76.3
Q ss_pred cccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEE
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF 115 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l 115 (183)
+....+....+.+|..+|+.+.++|.. .++++|.|..|++|++++..+. ....-+.+|...|.++.|++ ++.+|
T Consensus 121 d~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv---~VfGG~egHrdeVLSvD~~~-~gd~i 196 (385)
T KOG1034|consen 121 DVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCV---AVFGGVEGHRDEVLSVDFSL-DGDRI 196 (385)
T ss_pred ecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEE---EEecccccccCcEEEEEEcC-CCCee
Confidence 445667778899999999999999876 5899999999999999987651 12223467999999999999 88899
Q ss_pred EEEeCCCeEEEEeCCC
Q psy2113 116 VSASFDNSVKLWDLRS 131 (183)
Q Consensus 116 ~~~~~dg~i~vwd~~~ 131 (183)
++++.|..+++|++..
T Consensus 197 ~ScGmDhslk~W~l~~ 212 (385)
T KOG1034|consen 197 ASCGMDHSLKLWRLNV 212 (385)
T ss_pred eccCCcceEEEEecCh
Confidence 9999999999999983
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=6.2e-14 Score=93.44 Aligned_cols=155 Identities=20% Similarity=0.416 Sum_probs=102.7
Q ss_pred eeceeEEEEEeecCcEEEEEEe-cc-------C-CCCcccccccCccceEEEec-cCCCeeEEEEccCCe-EE--EEeCC
Q psy2113 6 FGILTLGVIFMTVGALLTLTNI-EV-------T-SLPSFFQLILQKTPLITLKG-HKEAISAVQWTAVDE-II--TSSWD 72 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~-~~-------~-~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-l~--s~~~d 72 (183)
|...-..+.|+++|..+++..- +. + ....+.. .....+...+.- ..++|.+++|+|++. |+ .|..+
T Consensus 4 f~~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~-~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~ 82 (194)
T PF08662_consen 4 FNVDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYL-NEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMP 82 (194)
T ss_pred cccceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEE-ecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCC
Confidence 3445577889999988776542 11 1 0111111 122334444433 345799999999865 44 35567
Q ss_pred CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC---CCeEEEEeCCCCCcceEEeccCCCcEEEE
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF---DNSVKLWDLRSPKVPLFDMLGHEDKVMCV 149 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 149 (183)
..+.+||++... ...+ +...+..+.|+| .++++++++. .|.+.+||.++.+. +... .| ..++.+
T Consensus 83 ~~v~lyd~~~~~-------i~~~--~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~-i~~~-~~-~~~t~~ 149 (194)
T PF08662_consen 83 AKVTLYDVKGKK-------IFSF--GTQPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKK-ISTF-EH-SDATDV 149 (194)
T ss_pred cccEEEcCcccE-------eEee--cCCCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEE-eecc-cc-CcEEEE
Confidence 899999996221 3333 456788999999 8889888864 46799999997654 3333 23 357899
Q ss_pred EecCC-cEEEEecC------CCcEEEEEecCC
Q psy2113 150 NWSDY-RYIMSGGQ------DNSVRVFKTKHQ 174 (183)
Q Consensus 150 ~~~~~-~~l~~~~~------dg~i~iwd~~~~ 174 (183)
+|+|+ .+++++.. |..++||+....
T Consensus 150 ~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 150 EWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred EEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 99976 88887764 788999998643
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-15 Score=109.57 Aligned_cols=155 Identities=21% Similarity=0.324 Sum_probs=124.3
Q ss_pred eceeEEEEEeecCcEEEEE----EeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLT----NIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
+..|.+++.+||..+.... ++.+|++ .+...+..|++|.+.+.||..+++|. |-+|+.|.+||-||++
T Consensus 509 apaCyALa~spDakvcFsccsdGnI~vwDL-------hnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr 581 (705)
T KOG0639|consen 509 APACYALAISPDAKVCFSCCSDGNIAVWDL-------HNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR 581 (705)
T ss_pred chhhhhhhcCCccceeeeeccCCcEEEEEc-------ccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence 5678999999999876553 3888854 46677899999999999999998876 9999999999999998
Q ss_pred CCCCc----------------------------------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEE
Q psy2113 82 LGGMK----------------------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 127 (183)
Q Consensus 82 ~~~~~----------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vw 127 (183)
.+... ........+.-|..-|.++.|.+ -+.++++.+.|..+-.|
T Consensus 582 egrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~-cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 582 EGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAW 660 (705)
T ss_pred hhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecc-cCceeeecCchhhhhhc
Confidence 76433 01111223445778899999999 89999999999999999
Q ss_pred eCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEe
Q psy2113 128 DLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 128 d~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~ 171 (183)
....+.. +... ...+.|.+++.+ ++++|++|+.|.+-.+|.+
T Consensus 661 rtPyGas-iFqs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 661 RTPYGAS-IFQS-KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCccccc-eeec-cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9988864 4333 346789999998 6699999999999988875
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-14 Score=106.45 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=120.2
Q ss_pred eEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~ 85 (183)
..+++|++.++++.++. +..| +..+.++...++...+.|.+++.+|.+. ++.|+.||.+..++...+..
T Consensus 72 IE~L~W~e~~RLFS~g~sg~i~Ew-------Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I 144 (691)
T KOG2048|consen 72 IESLAWAEGGRLFSSGLSGSITEW-------DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI 144 (691)
T ss_pred eeeEEEccCCeEEeecCCceEEEE-------ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE
Confidence 56788988888887754 5556 4557777888888999999999998765 78888999887777766554
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEE-------ecc-CCCcEEEEEecCCcEE
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFD-------MLG-HEDKVMCVNWSDYRYI 157 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-------~~~-~~~~v~~~~~~~~~~l 157 (183)
.. ...+...++.+.+++|+| ++..+++|+.||.|++||...+.. +.. +.. ...-|+++.|..+..|
T Consensus 145 ~~----~r~l~rq~sRvLslsw~~-~~~~i~~Gs~Dg~Iriwd~~~~~t-~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI 218 (691)
T KOG2048|consen 145 TY----KRSLMRQKSRVLSLSWNP-TGTKIAGGSIDGVIRIWDVKSGQT-LHIITMQLDRLSKREPTIVWSVLFLRDSTI 218 (691)
T ss_pred EE----EeecccccceEEEEEecC-CccEEEecccCceEEEEEcCCCce-EEEeeecccccccCCceEEEEEEEeecCcE
Confidence 22 333444568899999999 888999999999999999998865 331 111 2335688888877899
Q ss_pred EEecCCCcEEEEEecCCCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~~~ 177 (183)
++|...|+|.+||...+...
T Consensus 219 ~sgDS~G~V~FWd~~~gTLi 238 (691)
T KOG2048|consen 219 ASGDSAGTVTFWDSIFGTLI 238 (691)
T ss_pred EEecCCceEEEEcccCcchh
Confidence 99999999999998877544
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.1e-15 Score=105.52 Aligned_cols=134 Identities=14% Similarity=0.275 Sum_probs=103.5
Q ss_pred cceEEEeccCCCeeEEEEccCC---eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe
Q psy2113 43 TPLITLKGHKEAISAVQWTAVD---EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS 119 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~---~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 119 (183)
......+-+.++|++++|+|.. .+++|...|.|-+||+++.+..... ...+..|..+|.++.|+|.+...+++.+
T Consensus 177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~--v~~f~~hs~~Vs~l~F~P~n~s~i~ssS 254 (498)
T KOG4328|consen 177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDG--VYLFTPHSGPVSGLKFSPANTSQIYSSS 254 (498)
T ss_pred eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCc--eEEeccCCccccceEecCCChhheeeec
Confidence 3445567789999999999763 2788999999999999743322211 3356789999999999998888999999
Q ss_pred CCCeEEEEeCCCCCc--------------------------------------------ceEEeccCCCcEEEEEecCC-
Q psy2113 120 FDNSVKLWDLRSPKV--------------------------------------------PLFDMLGHEDKVMCVNWSDY- 154 (183)
Q Consensus 120 ~dg~i~vwd~~~~~~--------------------------------------------~~~~~~~~~~~v~~~~~~~~- 154 (183)
.||+|+.-|++.... ....+.-|.-.|.+|+++|-
T Consensus 255 yDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~ 334 (498)
T KOG4328|consen 255 YDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVC 334 (498)
T ss_pred cCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCC
Confidence 999999988874321 11222345668999999975
Q ss_pred -cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 155 -RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 155 -~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
.++++++.|++.+|||+|....+.
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~ 359 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKA 359 (498)
T ss_pred chheeecccCcceeeeehhhhcCCC
Confidence 799999999999999999866554
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.6e-14 Score=97.56 Aligned_cols=124 Identities=23% Similarity=0.413 Sum_probs=98.6
Q ss_pred eccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEe-cCCCCEEEEEeCCCeEEE
Q psy2113 49 KGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWS-PIDPQLFVSASFDNSVKL 126 (183)
Q Consensus 49 ~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-p~~~~~l~~~~~dg~i~v 126 (183)
.+|.+-|+++.|...|+ +++|+.|++++|||.+... .........+.|.+.|..+.|. |.-|+.+++++.|+++.+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s--~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~i 87 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDS--GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSI 87 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCC--CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceee
Confidence 47889999999997655 9999999999999975433 3444456678899999999984 545789999999999999
Q ss_pred EeCCCCC--------cceEEeccCCCcEEEEEecCC---cEEEEecCCCcEEEEEecCC
Q psy2113 127 WDLRSPK--------VPLFDMLGHEDKVMCVNWSDY---RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 127 wd~~~~~--------~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~dg~i~iwd~~~~ 174 (183)
|.-.... .....+....+.|++|.|.|. -.+++++.||.+|||+.-..
T Consensus 88 WEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp 146 (361)
T KOG2445|consen 88 WEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDP 146 (361)
T ss_pred eeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCc
Confidence 9763111 124456677889999999974 57899999999999986554
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.3e-15 Score=109.84 Aligned_cols=128 Identities=22% Similarity=0.326 Sum_probs=105.4
Q ss_pred cceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEE-eecCCcceEEEEEecCCC-CEEEEEe
Q psy2113 43 TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKST-FSSHKEWVQSVRWSPIDP-QLFVSAS 119 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~-~~l~~~~ 119 (183)
.....+.||.+.|++++|+.+|. |++|+.|-.+.|||.-..+. ++. -.+|...|.++.|-|..+ +++++|.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kl------lhsI~TgHtaNIFsvKFvP~tnnriv~sgA 114 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKL------LHSISTGHTANIFSVKFVPYTNNRIVLSGA 114 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcce------eeeeecccccceeEEeeeccCCCeEEEecc
Confidence 34567899999999999997766 88999999999999876554 333 468999999999999644 5889999
Q ss_pred CCCeEEEEeCCC---------CCcceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCCC
Q psy2113 120 FDNSVKLWDLRS---------PKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 120 ~dg~i~vwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.|..|+++|+.. ...+...+..|...|..++-.|+ +.+.+++.||+|+.+|++....
T Consensus 115 gDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~ 182 (758)
T KOG1310|consen 115 GDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHV 182 (758)
T ss_pred CcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCcc
Confidence 999999999985 22335567789999999998865 7889999999999999998543
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1e-14 Score=102.63 Aligned_cols=125 Identities=26% Similarity=0.416 Sum_probs=102.3
Q ss_pred CCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCcc---CceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEE
Q psy2113 52 KEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMKK---GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKL 126 (183)
Q Consensus 52 ~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~v 126 (183)
..+|.++.|.++ +.+++|+.|..|++|.+....... .......+..|...|+++.|+| ++.++++|+.+|.+.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p-~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSP-DGELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcC-CcCeeeecCCCceEEE
Confidence 458899999854 369999999999999987655433 3344556778999999999999 8999999999999999
Q ss_pred EeCC--------C-----C--CcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 127 WDLR--------S-----P--KVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 127 wd~~--------~-----~--~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
|-.. + . ......+.+|...|..++|+++ .++++++.|..+++||+..+...
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~ 158 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLL 158 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeE
Confidence 9776 2 1 0124466789999999999966 89999999999999999988654
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.3e-15 Score=107.04 Aligned_cols=132 Identities=27% Similarity=0.401 Sum_probs=108.2
Q ss_pred ceEEEeccCCCeeEEEEccC-CeEEEEeCCCeEEEEEcCCCCC--ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC
Q psy2113 44 PLITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAELGGM--KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 44 ~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
.-.++..|.+.|+.+.|.+. ..|++++.|+.+.+|+++.... .....++..+.+|.++|.|+++.+ .+..+.+|+.
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~-n~~~~ysgg~ 364 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPS-NGEHCYSGGI 364 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecC-CceEEEeecc
Confidence 34477789999999999965 5599999999999999943111 234556788999999999999999 8899999999
Q ss_pred CCeEEEEeCCC---------CCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 121 DNSVKLWDLRS---------PKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 121 dg~i~vwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
||+|+.|++.. .......+.+|.+.|+.++++.. ..|++++.||+++.|+......
T Consensus 365 Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP 430 (577)
T ss_pred CceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc
Confidence 99999996542 12234577899999999999955 7899999999999999877665
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.2e-15 Score=111.24 Aligned_cols=129 Identities=18% Similarity=0.289 Sum_probs=106.2
Q ss_pred ccCccceEEEeccCCCeeEEEEccCCe-EEEEeCC-----CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCC
Q psy2113 39 ILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWD-----HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDP 112 (183)
Q Consensus 39 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~ 112 (183)
.....++..+-||...|++++.+|++. ++++... ..|++|+..+... ...+.+|+-.|+.++|+| ++
T Consensus 512 ~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~------~~~L~~HsLTVT~l~FSp-dg 584 (764)
T KOG1063|consen 512 NTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ------VQELEGHSLTVTRLAFSP-DG 584 (764)
T ss_pred hccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh------hheecccceEEEEEEECC-CC
Confidence 334456778899999999999998877 5565543 3589999877654 446889999999999999 89
Q ss_pred CEEEEEeCCCeEEEEeCCCCCcce---EEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 113 QLFVSASFDNSVKLWDLRSPKVPL---FDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 113 ~~l~~~~~dg~i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
++|++.+.|+++.+|......... .....|..-|++.+|+|+ .+++|++.|.+|.+|.....
T Consensus 585 ~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 585 RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 999999999999999886543322 236789999999999987 77999999999999998876
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-14 Score=103.56 Aligned_cols=118 Identities=14% Similarity=0.271 Sum_probs=101.0
Q ss_pred cCCCeeEEEEccCCeEEEEe-CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 51 HKEAISAVQWTAVDEIITSS-WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 51 h~~~v~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
-.++|.++.-+|.|.++.++ -.|.+++|.+.++.. +..+..|=..|+|+.|+- ++.+|+||+.||.|.+|++
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~L------L~v~~aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l 152 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGIL------LNVLSAHYQSITCLKFSD-DGSHIITGSKDGAVLVWLL 152 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEeccccH------HHHHHhhccceeEEEEeC-CCcEEEecCCCccEEEEEE
Confidence 35679999999999866555 999999999999987 456678999999999999 8999999999999999977
Q ss_pred CC--------CCcceEEeccCCCcEEEEEecCC---cEEEEecCCCcEEEEEecCCC
Q psy2113 130 RS--------PKVPLFDMLGHEDKVMCVNWSDY---RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 130 ~~--------~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~ 175 (183)
.+ ...+...+..|.-+|+++...++ .++++++.|.++++||+..+.
T Consensus 153 ~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~ 209 (476)
T KOG0646|consen 153 TDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV 209 (476)
T ss_pred EeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce
Confidence 42 12357889999999999998854 799999999999999998764
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.1e-14 Score=107.00 Aligned_cols=161 Identities=18% Similarity=0.242 Sum_probs=117.4
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEc------------cCCeEEEEeCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWT------------AVDEIITSSWD 72 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------------~~~~l~s~~~d 72 (183)
.|.++.|.+....+...- +.+|++.. ..+......+-.|...|.++.-- |.+.|++|+.|
T Consensus 326 D~IA~~Fdet~~klscVYndhSlYvWDvrD----~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD 401 (1080)
T KOG1408|consen 326 DAIACQFDETTDKLSCVYNDHSLYVWDVRD----VNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSD 401 (1080)
T ss_pred ceeEEEecCCCceEEEEEcCceEEEEeccc----cccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCC
Confidence 567788998877765532 66776653 33344445556688877777643 33569999999
Q ss_pred CeEEEEEcCCCCCccC---c--------eeE--------------------EEeecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 73 HTLKIWDAELGGMKKG---A--------IVK--------------------STFSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~---~--------~~~--------------------~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
++|++||+........ . ++. ...-+....+.+++.+| ++++|++|..-
T Consensus 402 ~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~ 480 (1080)
T KOG1408|consen 402 GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRG 480 (1080)
T ss_pred CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCcc
Confidence 9999999976211100 0 000 00112234689999999 99999999999
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEec-CC---cEEEEecCCCcEEEEEecCCC
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DY---RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~---~~l~~~~~dg~i~iwd~~~~~ 175 (183)
|.++||++...+. .....+|++.|.|+.|+ |. ++|++++.|+.|++||+...-
T Consensus 481 GnlrVy~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny 537 (1080)
T KOG1408|consen 481 GNLRVYDLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY 537 (1080)
T ss_pred CceEEEEehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc
Confidence 9999999998775 66788999999999999 43 799999999999999987653
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-14 Score=97.11 Aligned_cols=156 Identities=17% Similarity=0.228 Sum_probs=110.1
Q ss_pred EEEEeecCcEEEEEE----eccCCCCcc-cccccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCCC
Q psy2113 12 GVIFMTVGALLTLTN----IEVTSLPSF-FQLILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~ 85 (183)
..+.+|+|++++... +++|.+-.. .........+..+++|...|..++|+++. ++++.+.||+.++||..-.-.
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~ 312 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE 312 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence 457899999999876 777765432 22334556678999999999999999775 599999999999999753211
Q ss_pred c-cCceeEE----EeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEE
Q psy2113 86 K-KGAIVKS----TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 86 ~-~~~~~~~----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~ 159 (183)
. +....+. .+....+....+.++| ++..|+.. ....++++..++++..-.....|+..|.+++|+++ .++++
T Consensus 313 ~~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~at 390 (420)
T KOG2096|consen 313 AGQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIAT 390 (420)
T ss_pred cCCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEee
Confidence 0 0000011 1122234455899999 77666554 45689999999887644455679999999999965 66666
Q ss_pred ecCCCcEEEEE
Q psy2113 160 GGQDNSVRVFK 170 (183)
Q Consensus 160 ~~~dg~i~iwd 170 (183)
+ .|..++++-
T Consensus 391 c-Gdr~vrv~~ 400 (420)
T KOG2096|consen 391 C-GDRYVRVIR 400 (420)
T ss_pred e-cceeeeeec
Confidence 5 578888865
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-15 Score=115.17 Aligned_cols=129 Identities=17% Similarity=0.332 Sum_probs=101.4
Q ss_pred cCCCeeEEEEccC-----CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEE
Q psy2113 51 HKEAISAVQWTAV-----DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125 (183)
Q Consensus 51 h~~~v~~~~~~~~-----~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 125 (183)
-....+.++|.+. |.|+.|..||.|-+||...-........+.....|.+.|..+.|++..++++++|+.||.|.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~ 142 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEIL 142 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEE
Confidence 3456889999832 45888899999999998753222233345567789999999999998788999999999999
Q ss_pred EEeCCCCCcceEE-eccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCCCCCC
Q psy2113 126 LWDLRSPKVPLFD-MLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 126 vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 179 (183)
+||+...+.+... -....+.|.+++|+.. ..|++++.+|.+.|||+|..+...+
T Consensus 143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ 199 (1049)
T KOG0307|consen 143 IWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIK 199 (1049)
T ss_pred EeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccc
Confidence 9999987653333 2335678999999954 7889999999999999999866543
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.4e-13 Score=102.33 Aligned_cols=152 Identities=14% Similarity=0.154 Sum_probs=120.0
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 85 (183)
...++|.|+|.++.+.+ ++.|..... ...++. +.-+...|.+++.. .+.|++|+.+++|.+|.+.....
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd---~e~P~t---i~~~g~~v~~ia~~-s~~f~~~s~~~tv~~y~fps~~~ 88 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSD---EEEPET---IDISGELVSSIACY-SNHFLTGSEQNTVLRYKFPSGEE 88 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCc---ccCCch---hhccCceeEEEeec-ccceEEeeccceEEEeeCCCCCc
Confidence 45788999999888866 666654321 112222 22277778777754 35899999999999999987664
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCC
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDN 164 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg 164 (183)
. ..+....-++.+++++. ++.+++.|+.|-.|++-+..+... ...+.+|..+|.++.|+|. .+|++.+.||
T Consensus 89 ~------~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~-~~~lrgh~apVl~l~~~p~~~fLAvss~dG 160 (933)
T KOG1274|consen 89 D------TILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQ-EKVLRGHDAPVLQLSYDPKGNFLAVSSCDG 160 (933)
T ss_pred c------ceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccch-heeecccCCceeeeeEcCCCCEEEEEecCc
Confidence 2 13344566789999999 899999999999999999998876 7889999999999999976 8999999999
Q ss_pred cEEEEEecCCCC
Q psy2113 165 SVRVFKTKHQPK 176 (183)
Q Consensus 165 ~i~iwd~~~~~~ 176 (183)
.|++||+.++..
T Consensus 161 ~v~iw~~~~~~~ 172 (933)
T KOG1274|consen 161 KVQIWDLQDGIL 172 (933)
T ss_pred eEEEEEcccchh
Confidence 999999987654
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.6e-15 Score=115.14 Aligned_cols=119 Identities=23% Similarity=0.397 Sum_probs=106.3
Q ss_pred cceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 43 TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
+.+..+.+|...|+|+.|...++ +++|+.|..++||.+++..+ .....+|.+.++.++.+. ...++++++.|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~------lAs~rGhs~ditdlavs~-~n~~iaaaS~D 253 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARC------LASCRGHSGDITDLAVSS-NNTMIAAASND 253 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhh------hccCCCCccccchhccch-hhhhhhhcccC
Confidence 34556778999999999997665 89999999999999988776 668899999999999988 77799999999
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEec
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~ 172 (183)
..|++|.++++.. +..+.+|.+.|++++|+|-. +.+.||++++||.+
T Consensus 254 ~vIrvWrl~~~~p-vsvLrghtgavtaiafsP~~---sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 254 KVIRVWRLPDGAP-VSVLRGHTGAVTAIAFSPRA---SSSDDGTCRIWDAR 300 (1113)
T ss_pred ceEEEEecCCCch-HHHHhccccceeeeccCccc---cCCCCCceEecccc
Confidence 9999999999876 89999999999999999843 78899999999988
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.6e-12 Score=90.75 Aligned_cols=128 Identities=15% Similarity=0.256 Sum_probs=96.2
Q ss_pred cCccceEEEe---ccCCCeeEEEEccCCe-EEE--EeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCC
Q psy2113 40 LQKTPLITLK---GHKEAISAVQWTAVDE-IIT--SSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQ 113 (183)
Q Consensus 40 ~~~~~~~~~~---~h~~~v~~~~~~~~~~-l~s--~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~ 113 (183)
..-+.+.++. .+...+..+..++.+. ++- ....|.|.+||..+.+. ...+..|++.+-+++|+| +|.
T Consensus 114 ~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~------v~~I~aH~~~lAalafs~-~G~ 186 (391)
T KOG2110|consen 114 KDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQP------VNTINAHKGPLAALAFSP-DGT 186 (391)
T ss_pred ccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEccccee------eeEEEecCCceeEEEECC-CCC
Confidence 3344444443 3344455555555444 442 33469999999987664 567889999999999999 999
Q ss_pred EEEEEeCCCe-EEEEeCCCCCcceEEeccC--CCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 114 LFVSASFDNS-VKLWDLRSPKVPLFDMLGH--EDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 114 ~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+++|++..|+ |+|+.+.+++. +..++.- ...|.+++|+++ ++|.+.+..++|++|.++...
T Consensus 187 llATASeKGTVIRVf~v~~G~k-l~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 187 LLATASEKGTVIRVFSVPEGQK-LYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEeccCceEEEEEEcCCccE-eeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9999999996 78999999886 5555432 356789999976 889999999999999998765
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-13 Score=97.24 Aligned_cols=154 Identities=19% Similarity=0.252 Sum_probs=119.9
Q ss_pred EEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCC
Q psy2113 11 LGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~ 85 (183)
..++|+++|..+++++ +++|+.|. ...+.....|...|.++.|+|+++ |++-+.| ..+||+.+++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-------~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-------MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-------chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch
Confidence 5789999999999885 88886553 333445667999999999999996 7788888 999999987611
Q ss_pred c--------------------c---CceeEE-----------Ee--------------ecCCcceEEEEEecCCCCEEEE
Q psy2113 86 K--------------------K---GAIVKS-----------TF--------------SSHKEWVQSVRWSPIDPQLFVS 117 (183)
Q Consensus 86 ~--------------------~---~~~~~~-----------~~--------------~~~~~~v~~~~~~p~~~~~l~~ 117 (183)
. . ...+.. .+ ..-...|++++.++ ++++++.
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~-dGkf~Al 298 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD-DGKFLAL 298 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC-CCcEEEE
Confidence 1 0 000000 00 00123689999999 8999999
Q ss_pred EeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecC
Q psy2113 118 ASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 118 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 173 (183)
|+.||.|-+++..+.+......+.|...|+.+.|+|+ +++++.+.|..+++..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9999999999999888756677889999999999988 8899999999999988776
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.7e-13 Score=97.41 Aligned_cols=155 Identities=15% Similarity=0.251 Sum_probs=114.3
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEecc-CCCeeEEEEccCCe--EEEEeCCCeEEEEEcCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGH-KEAISAVQWTAVDE--IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~ 82 (183)
+..+.|+-...+++... +-+. ....+....+|... ...|.-+.|++..+ |.+++.+|.|.+||+..
T Consensus 124 vt~v~YN~~DeyiAsvs~gGdiiih-------~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g 196 (673)
T KOG4378|consen 124 VTYVDYNNTDEYIASVSDGGDIIIH-------GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQG 196 (673)
T ss_pred eEEEEecCCcceeEEeccCCcEEEE-------ecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccC
Confidence 44555666666665543 2222 22333344455433 34677899998765 67899999999999976
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
.... ......|..+...|+|+|.++.+|++.+.|..|.+||.+..+. ........+...++|.++ .+|+.|.
T Consensus 197 ~sp~-----~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s--~~~l~y~~Plstvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 197 MSPI-----FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS--TDRLTYSHPLSTVAFSECGTYLCAGN 269 (673)
T ss_pred CCcc-----cchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc--cceeeecCCcceeeecCCceEEEeec
Confidence 5431 3445679999999999998888999999999999999997653 233344568899999965 8899999
Q ss_pred CCCcEEEEEecCCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~~ 178 (183)
..|.|..||+|..+.+.
T Consensus 270 s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 270 SKGELIAYDMRSTKAPV 286 (673)
T ss_pred CCceEEEEecccCCCCc
Confidence 99999999999887765
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-13 Score=93.37 Aligned_cols=109 Identities=20% Similarity=0.284 Sum_probs=85.9
Q ss_pred eeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC
Q psy2113 55 ISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK 133 (183)
Q Consensus 55 v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~ 133 (183)
-.|+.|++.|. |+.|..||.|-+||+.+... ...+.+|-.+|++++|++ +++.|+|.+.|..|.+||+..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i------ar~lsaH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI------ARMLSAHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch------hhhhhccccceeEEEecC-CCCEeeeecCCceeEEEeccCCC
Confidence 67999998876 88999999999999988764 456789999999999999 99999999999999999999998
Q ss_pred cceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEec
Q psy2113 134 VPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 134 ~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~ 172 (183)
+ +..+. ..++|+...|+|. +..++.-.+..-.+-++.
T Consensus 99 ~-l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s 137 (405)
T KOG1273|consen 99 P-LKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFS 137 (405)
T ss_pred c-eeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEec
Confidence 5 55443 4678999999964 444443333333333333
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=99.39 Aligned_cols=136 Identities=21% Similarity=0.280 Sum_probs=109.2
Q ss_pred eccCCCCcccccccCccceEEEeccCCCeeEEEEc-cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecC-CcceEE
Q psy2113 27 IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWT-AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH-KEWVQS 104 (183)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~-~~~v~~ 104 (183)
+++|++ ..+.....+++|.+.|+++.|+ .+..|++++..|.|.|..+.++.. ...+... ...|.-
T Consensus 103 Vkiwdl-------~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~------tt~f~~~sgqsvRl 169 (673)
T KOG4378|consen 103 VKIWDL-------RAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK------TTTFTIDSGQSVRL 169 (673)
T ss_pred eeehhh-------HHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc------ccceecCCCCeEEE
Confidence 677754 3455567789999999999999 556699999999999999987664 2234333 334557
Q ss_pred EEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCC
Q psy2113 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 105 ~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+.++|....+|.+++.+|.|.+||+............|..+...|+|+|. .+|++.+.|.+|.+||.+...
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~ 242 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA 242 (673)
T ss_pred eecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc
Confidence 89999666688889999999999999877656677889999999999965 788999999999999998654
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.9e-13 Score=91.76 Aligned_cols=146 Identities=17% Similarity=0.328 Sum_probs=106.4
Q ss_pred eccCCCCcccccccCccceEEEeccC-CCeeEEEEc-cCCeEEEEe----CCCeEEEEEcCCCCCccCceeEEEeecCCc
Q psy2113 27 IEVTSLPSFFQLILQKTPLITLKGHK-EAISAVQWT-AVDEIITSS----WDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100 (183)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~-~~~~l~s~~----~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~ 100 (183)
++.|++... ....+.....|. .+..+++-+ ..+.+++|. .+-.+.+||+|..+.. +......|..
T Consensus 96 Vr~wD~Rs~-----~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~----l~~~~eSH~D 166 (376)
T KOG1188|consen 96 VRLWDIRSQ-----AESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL----LRQLNESHND 166 (376)
T ss_pred EEEEEeecc-----hhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch----hhhhhhhccC
Confidence 777766432 223344555555 456677765 334455553 3668999999876542 1334567999
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc--ceEEeccCCCcEEEEEec-CC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--PLFDMLGHEDKVMCVNWS-DY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 101 ~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.|++++|+|.++++|++|+.||.|.++|++.... .+.....|...|.++.|. ++ +.|.+-+...+..+|+++.+..
T Consensus 167 DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~ 246 (376)
T KOG1188|consen 167 DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE 246 (376)
T ss_pred cceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh
Confidence 9999999999999999999999999999986532 233445677889999999 44 5899999999999999999876
Q ss_pred CCCcc
Q psy2113 177 SGQKS 181 (183)
Q Consensus 177 ~~~~~ 181 (183)
....+
T Consensus 247 ~~~~~ 251 (376)
T KOG1188|consen 247 ETWLE 251 (376)
T ss_pred hhccc
Confidence 55443
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.5e-12 Score=92.57 Aligned_cols=157 Identities=18% Similarity=0.231 Sum_probs=114.2
Q ss_pred cceeceeEEEEEeecCcEEEEEE-eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 4 NKFGILTLGVIFMTVGALLTLTN-IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
.+++-.+.+..|+|.| .++++. -..|-+. +.++...+..-. ..+++++++|+|+|. |+.|+.|+.|++|.+.
T Consensus 404 ~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~----d~e~~~lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs 477 (626)
T KOG2106|consen 404 KIIEDPAECADFHPSG-VVAVGTATGRWFVL----DTETQDLVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVS 477 (626)
T ss_pred EEecCceeEeeccCcc-eEEEeeccceEEEE----ecccceeEEEEe-cCCceEEEEEcCCCCEEEEecCCCeEEEEEEC
Confidence 4677788899999999 666655 2223211 333433343333 388999999999876 8899999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc---------------------------
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--------------------------- 134 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~--------------------------- 134 (183)
.+.... ...-..+..+|+.+.|++ +++++.+-+.|-.|..|.....+.
T Consensus 478 ~~g~~y----~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t 552 (626)
T KOG2106|consen 478 ANGRKY----SRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGT 552 (626)
T ss_pred CCCcEE----EEeeeecCceeEEeeecC-CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCc
Confidence 765421 222234558899999999 889999999999999994433221
Q ss_pred -----------------------------------ceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEe
Q psy2113 135 -----------------------------------PLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 135 -----------------------------------~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~ 171 (183)
+...+.+|++-|++++|. .+..+++.+.|..|..|++
T Consensus 553 ~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 553 DINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 345556888899999998 4477777779999999986
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-13 Score=95.97 Aligned_cols=130 Identities=12% Similarity=0.205 Sum_probs=103.5
Q ss_pred EEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEe-ecCCcceEEEEEecCCCCEEEEEeCCCe
Q psy2113 46 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTF-SSHKEWVQSVRWSPIDPQLFVSASFDNS 123 (183)
Q Consensus 46 ~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 123 (183)
+.+.+|.+.|+.+.|+.+++ |++|+.|..+++|.+......+..+++... ..|...|.|++|.. ..+++.+|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDL-ENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEcc-CCeeEecCCCcce
Confidence 45578999999999997777 889999999999998764443333334333 34568899999998 7889999999999
Q ss_pred EEEEeCCCCCcceEEeccCC---CcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 124 VKLWDLRSPKVPLFDMLGHE---DKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 124 i~vwd~~~~~~~~~~~~~~~---~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
|...|+++.+. +. ...|. +.|+.+.-+|. +.+++.+.++.|.+||.+......
T Consensus 129 VI~HDiEt~qs-i~-V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~ 185 (609)
T KOG4227|consen 129 VIKHDIETKQS-IY-VANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPI 185 (609)
T ss_pred eEeeeccccee-ee-eecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCC
Confidence 99999998764 32 33344 48999999975 899999999999999999876443
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.2e-11 Score=85.04 Aligned_cols=161 Identities=14% Similarity=0.256 Sum_probs=106.9
Q ss_pred eeceeEEEEEeecCcEEEEEE-eccCCCCcccccccCccceEEEeccC--CCeeEEEEccCCeEEE--EeCCCeEEEEEc
Q psy2113 6 FGILTLGVIFMTVGALLTLTN-IEVTSLPSFFQLILQKTPLITLKGHK--EAISAVQWTAVDEIIT--SSWDHTLKIWDA 80 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~l~s--~~~d~~v~vwd~ 80 (183)
|--...++.+.++.-.++..+ +.+|.++. +.+.+..+.... ..+.++.-..+..+++ |-.-|.|.|-|+
T Consensus 93 f~~~I~~V~l~r~riVvvl~~~I~VytF~~------n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL 166 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVVLENKIYVYTFPD------NPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDL 166 (346)
T ss_pred eccceeeEEEcCCeEEEEecCeEEEEEcCC------ChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEh
Confidence 334445555555443333333 66666542 223333333222 1222222222233333 456699999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCe-EEEEeCCCCCcceEEec-c-CCCcEEEEEecCC-cE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS-VKLWDLRSPKVPLFDML-G-HEDKVMCVNWSDY-RY 156 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~-~-~~~~v~~~~~~~~-~~ 156 (183)
....... ...+..|...|.|++.+. +|.+++|++..|+ |++||.+++.. +..++ + ....|.+++|+|+ .+
T Consensus 167 ~~~~~~~----p~~I~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~-l~E~RRG~d~A~iy~iaFSp~~s~ 240 (346)
T KOG2111|consen 167 ASTKPNA----PSIINAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTL-LQELRRGVDRADIYCIAFSPNSSW 240 (346)
T ss_pred hhcCcCC----ceEEEcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcE-eeeeecCCchheEEEEEeCCCccE
Confidence 8765421 246778999999999999 8999999999996 89999999986 44443 3 2357999999987 89
Q ss_pred EEEecCCCcEEEEEecCCCCCC
Q psy2113 157 IMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
|+++|..|+|+|+.++......
T Consensus 241 LavsSdKgTlHiF~l~~~~~~~ 262 (346)
T KOG2111|consen 241 LAVSSDKGTLHIFSLRDTENTE 262 (346)
T ss_pred EEEEcCCCeEEEEEeecCCCCc
Confidence 9999999999999998865443
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.8e-12 Score=88.38 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=98.7
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-E-EEEeCCCeEEEEEcCCCCCc
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-I-ITSSWDHTLKIWDAELGGMK 86 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~~~~~~ 86 (183)
...+++|+|++..+++..... ... ...+....+....+. .......+.|++++. + +++..++.+++||+++.+..
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~-~~~-~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~ 192 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETT-NMA-HFIDTKTYEIVDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVI 192 (300)
T ss_pred CcceEEECCCCCEEEEEecCC-CeE-EEEeCCCCeEEEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceee
Confidence 346788999999887765221 000 001222233333332 233457889998876 4 34456899999999876542
Q ss_pred cCceeEEEeecC-------CcceEEEEEecCCCCEE-EEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE
Q psy2113 87 KGAIVKSTFSSH-------KEWVQSVRWSPIDPQLF-VSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 87 ~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
..+..+ ......++|+| +++.+ ++...++.+.+||.++.+. .... .+...+.+++|+|+ .+|
T Consensus 193 ------~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~-~~~~-~~~~~~~~~~~~~~g~~l 263 (300)
T TIGR03866 193 ------KKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEV-LDYL-LVGQRVWQLAFTPDEKYL 263 (300)
T ss_pred ------eeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcE-EEEE-EeCCCcceEEECCCCCEE
Confidence 222111 11235688999 66654 4445567899999988764 3332 34457899999966 777
Q ss_pred EEe-cCCCcEEEEEecCCCC
Q psy2113 158 MSG-GQDNSVRVFKTKHQPK 176 (183)
Q Consensus 158 ~~~-~~dg~i~iwd~~~~~~ 176 (183)
+++ ..+|.|.+||+++++.
T Consensus 264 ~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 264 LTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EEEcCCCCeEEEEECCCCcE
Confidence 765 5689999999998764
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.9e-12 Score=91.82 Aligned_cols=149 Identities=15% Similarity=0.201 Sum_probs=102.5
Q ss_pred EEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCce
Q psy2113 12 GVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAI 90 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~ 90 (183)
.+..++++.++++.+...|-.. ....+++.+..++ -.+.|..+.|+.+++ |++++.+|.|.+||++...+
T Consensus 308 ~FeVShd~~fia~~G~~G~I~l---LhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~----- 378 (514)
T KOG2055|consen 308 RFEVSHDSNFIAIAGNNGHIHL---LHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC----- 378 (514)
T ss_pred eeEecCCCCeEEEcccCceEEe---ehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce-----
Confidence 3456777877777663322110 0233444555554 567899999997766 88888999999999998754
Q ss_pred eEEEeecCCcce--EEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc----------------------------------
Q psy2113 91 VKSTFSSHKEWV--QSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV---------------------------------- 134 (183)
Q Consensus 91 ~~~~~~~~~~~v--~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~---------------------------------- 134 (183)
.+.+.. .+.| ++++.++ ++.++++|+..|.|.|||..+...
T Consensus 379 -~~rf~D-~G~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 379 -LHRFVD-DGSVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred -EEEEee-cCccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 444432 2333 5667778 788999999999999999653211
Q ss_pred -----------c-eE---Eec---cCCCcEEEEEecCC-cEEEEecCCCcEEEEEec
Q psy2113 135 -----------P-LF---DML---GHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 135 -----------~-~~---~~~---~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~ 172 (183)
| .. .++ ..-+.|+|++|+|+ .+++.|..+|.+.+|.+.
T Consensus 456 ~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 0 00 011 12246899999985 999999999999999875
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.3e-13 Score=103.04 Aligned_cols=144 Identities=23% Similarity=0.430 Sum_probs=111.3
Q ss_pred eeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
....++|.|||..+.... +-++ +...+..++++++|++.|++++|+.+|+ +++|+.|..|.+|...-..
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliy-------D~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVY-------DTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEE-------eCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc
Confidence 456899999998776544 3333 5567888999999999999999997776 9999999999999865433
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQD 163 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d 163 (183)
. .. ..|...|.|+.|+| -...+++++- ..+-+|....... ........+.+++|. ++++++.|-.|
T Consensus 87 ~-------Lk-YSH~D~IQCMsFNP-~~h~LasCsL-sdFglWS~~qK~V---~K~kss~R~~~CsWtnDGqylalG~~n 153 (1081)
T KOG1538|consen 87 I-------LK-YSHNDAIQCMSFNP-ITHQLASCSL-SDFGLWSPEQKSV---SKHKSSSRIICCSWTNDGQYLALGMFN 153 (1081)
T ss_pred e-------ee-eccCCeeeEeecCc-hHHHhhhcch-hhccccChhhhhH---HhhhhheeEEEeeecCCCcEEEEeccC
Confidence 2 12 35999999999999 7778888875 4567887765442 122335678899998 56999999999
Q ss_pred CcEEEEEec
Q psy2113 164 NSVRVFKTK 172 (183)
Q Consensus 164 g~i~iwd~~ 172 (183)
|+|.+-+-.
T Consensus 154 GTIsiRNk~ 162 (1081)
T KOG1538|consen 154 GTISIRNKN 162 (1081)
T ss_pred ceEEeecCC
Confidence 999997643
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-13 Score=89.86 Aligned_cols=125 Identities=17% Similarity=0.274 Sum_probs=100.5
Q ss_pred cceEEEeccCCCeeEEEEccC-CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 43 TPLITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
+.......|..+|.++.|.+. +.=++|+.+..+..|.+......-+. .....-....|..+..-| ++..++|++.|
T Consensus 196 kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~--~~e~~lknpGv~gvrIRp-D~KIlATAGWD 272 (323)
T KOG0322|consen 196 KVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQI--RKEITLKNPGVSGVRIRP-DGKILATAGWD 272 (323)
T ss_pred ccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccc--cceEEecCCCccceEEcc-CCcEEeecccC
Confidence 445566789999999999854 55677888888889988654221111 112222345688899999 89999999999
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEe
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~ 171 (183)
+.|+||..++... +..+.-|.+.|++++|+|+ +.+++++.|+.|.+|++
T Consensus 273 ~RiRVyswrtl~p-LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 273 HRIRVYSWRTLNP-LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred CcEEEEEeccCCc-hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999886 8889999999999999988 99999999999999986
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=4e-12 Score=87.69 Aligned_cols=164 Identities=15% Similarity=0.279 Sum_probs=114.2
Q ss_pred eeceeEEEEEe-------ecCcEEEEEE----eccCCCCcccccccCccceEEEe--ccCC---CeeEEEEccCCeEEEE
Q psy2113 6 FGILTLGVIFM-------TVGALLTLTN----IEVTSLPSFFQLILQKTPLITLK--GHKE---AISAVQWTAVDEIITS 69 (183)
Q Consensus 6 ~~~~~~~~~~~-------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~h~~---~v~~~~~~~~~~l~s~ 69 (183)
+|..+....+- |+..++++.. |++|+ ..+++....+. .|.+ .-.+++|+|+|.-+-+
T Consensus 103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wd-------aftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfa 175 (406)
T KOG2919|consen 103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWD-------AFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFA 175 (406)
T ss_pred cCCEEEEEEeeeccccCCCccceeeeccccCceeeee-------ccccccccchhhhhhHHhhhhheeEEecCCCCeEee
Confidence 45555555544 4555655554 66663 34444444443 2443 3468999999997778
Q ss_pred eCCCeEEEEEcCC-CCCccCce-eEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEE
Q psy2113 70 SWDHTLKIWDAEL-GGMKKGAI-VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVM 147 (183)
Q Consensus 70 ~~d~~v~vwd~~~-~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 147 (183)
+..+.|++||+.. +...+... ....-.+..+-+.|++|+|.+...++.|+....+-+|.-..... +..+.+|.+.|+
T Consensus 176 GykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p-l~llggh~gGvT 254 (406)
T KOG2919|consen 176 GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP-LQLLGGHGGGVT 254 (406)
T ss_pred cccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-eeeecccCCCee
Confidence 8899999999943 32211000 00111234677899999997777999999888888888777664 888889999999
Q ss_pred EEEecC-CcEEEEecC-CCcEEEEEecCCCCC
Q psy2113 148 CVNWSD-YRYIMSGGQ-DNSVRVFKTKHQPKS 177 (183)
Q Consensus 148 ~~~~~~-~~~l~~~~~-dg~i~iwd~~~~~~~ 177 (183)
.+.|.+ ++.|++|.. |-+|..||+|.-+.+
T Consensus 255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p 286 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARKDDKILCWDIRYSRDP 286 (406)
T ss_pred eEEeccCcCeecccccCCCeEEEEeehhccch
Confidence 999995 488888877 778999999986654
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=7.4e-12 Score=95.48 Aligned_cols=118 Identities=16% Similarity=0.298 Sum_probs=101.0
Q ss_pred CeeEEEEccC---CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 54 AISAVQWTAV---DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 54 ~v~~~~~~~~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
.|+++. +|. ++++.|+.+|.+.+|++++++. +..++++...|+++.-+| --..++.|..+|.|.+++++
T Consensus 161 ~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~------v~~f~~~~s~IT~ieqsP-aLDVVaiG~~~G~ViifNlK 232 (910)
T KOG1539|consen 161 FITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKV------VYTFQEFFSRITAIEQSP-ALDVVAIGLENGTVIIFNLK 232 (910)
T ss_pred ceeeEe-cchhheeeEEEeecCCcEEEEEeccCcE------EEEecccccceeEeccCC-cceEEEEeccCceEEEEEcc
Confidence 377665 454 6799999999999999999887 788999999999999999 78899999999999999999
Q ss_pred CCCcceEEeccCCCcEEEEEec-CC-cEEEEecCCCcEEEEEecCCCCCCCc
Q psy2113 131 SPKVPLFDMLGHEDKVMCVNWS-DY-RYIMSGGQDNSVRVFKTKHQPKSGQK 180 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 180 (183)
.++. +..++...+.|+.++|. ++ ..+++|+..|.+.+||++..+....-
T Consensus 233 ~dki-l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~ 283 (910)
T KOG1539|consen 233 FDKI-LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVT 283 (910)
T ss_pred cCcE-EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeee
Confidence 9986 55555445999999999 55 78899999999999999988766543
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.3e-12 Score=91.62 Aligned_cols=153 Identities=17% Similarity=0.255 Sum_probs=107.4
Q ss_pred EEEEee--cCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccC
Q psy2113 12 GVIFMT--VGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKG 88 (183)
Q Consensus 12 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~ 88 (183)
.++|++ .|.++...+...-.+... ++-+.+......+..++.|....|+|.+. ++....-+.+.+|+.+.+...+.
T Consensus 159 ~vaFsk~~~G~~l~~vD~s~~h~lSV-WdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~ 237 (626)
T KOG2106|consen 159 CVAFSKINGGSLLCAVDDSNPHMLSV-WDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKR 237 (626)
T ss_pred eeeecccCCCceEEEecCCCccccch-hhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEE
Confidence 345555 556666655221111111 13345555666677788899999998754 55555578999999987765332
Q ss_pred ceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEE
Q psy2113 89 AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRV 168 (183)
Q Consensus 89 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i 168 (183)
..... +..+..|.|++|.+ ++ -++||..+|.|.+|+..+.+. ......|.+.|.++....+..|++|+.|+.|..
T Consensus 238 ~~~fe--k~ekk~Vl~v~F~e-ng-dviTgDS~G~i~Iw~~~~~~~-~k~~~aH~ggv~~L~~lr~GtllSGgKDRki~~ 312 (626)
T KOG2106|consen 238 QGIFE--KREKKFVLCVTFLE-NG-DVITGDSGGNILIWSKGTNRI-SKQVHAHDGGVFSLCMLRDGTLLSGGKDRKIIL 312 (626)
T ss_pred eeccc--cccceEEEEEEEcC-CC-CEEeecCCceEEEEeCCCceE-EeEeeecCCceEEEEEecCccEeecCccceEEe
Confidence 21111 11236799999999 55 578999999999999988776 444449999999999997778888999999999
Q ss_pred EE
Q psy2113 169 FK 170 (183)
Q Consensus 169 wd 170 (183)
||
T Consensus 313 Wd 314 (626)
T KOG2106|consen 313 WD 314 (626)
T ss_pred cc
Confidence 99
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-13 Score=100.63 Aligned_cols=118 Identities=19% Similarity=0.317 Sum_probs=95.3
Q ss_pred eEEEEc--cCC--eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q psy2113 56 SAVQWT--AVD--EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS 131 (183)
Q Consensus 56 ~~~~~~--~~~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 131 (183)
++..|+ ++. .|+.+..||.|.++|.+................|...|..+.|.| ....|++++.|.++++||+.+
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT 131 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-CceeEEEccCCceeeeeeecc
Confidence 346676 332 388899999999999876544322222344567999999999999 889999999999999999998
Q ss_pred CCcceE--EeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCC
Q psy2113 132 PKVPLF--DMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 132 ~~~~~~--~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 175 (183)
.+. .. .+.+|...|.+++|.+. ..|++|+.||.|.|||++-..
T Consensus 132 s~l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~ 178 (720)
T KOG0321|consen 132 SRL-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG 178 (720)
T ss_pred cee-ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc
Confidence 875 33 48899999999999954 789999999999999998765
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=6e-12 Score=85.68 Aligned_cols=127 Identities=19% Similarity=0.387 Sum_probs=96.3
Q ss_pred ccCCCeeEEEEccCCe-----EEEEeCCCeEEEEEcCCCCCc--cCc-eeEEEeecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 50 GHKEAISAVQWTAVDE-----IITSSWDHTLKIWDAELGGMK--KGA-IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 50 ~h~~~v~~~~~~~~~~-----l~s~~~d~~v~vwd~~~~~~~--~~~-~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
.|.-+++.+.|.|+.. |++ +.+-.+|+|.+...... ... .....-..+..++++..|+.-+.+++.+.+-|
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLA-Ts~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD 172 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLA-TSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID 172 (364)
T ss_pred CCCCCccceEecCCccccCcchhh-cccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc
Confidence 5788999999997642 333 33458999998742211 100 00111223567899999998888999999999
Q ss_pred CeEEEEeCCCCCc--ceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCCCC
Q psy2113 122 NSVKLWDLRSPKV--PLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 122 g~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
-+..+||++++.. ...++.+|..+|..++|..+ +.+++.+.||.+|+||+|..+..
T Consensus 173 TTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 173 TTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred CeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 9999999998632 35678899999999999964 89999999999999999987643
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-12 Score=90.87 Aligned_cols=159 Identities=17% Similarity=0.198 Sum_probs=121.9
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCCCcc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~~~~ 87 (183)
..++.|+|...++.+++.. -.+..+..+......++.+.--..+|.+..|.|+|. +++++....++.||+.+.+..+
T Consensus 216 I~sv~FHp~~plllvaG~d-~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k 294 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLD-GTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTK 294 (514)
T ss_pred ceEEEecCCCceEEEecCC-CcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccccc
Confidence 4578899999998887733 122222235556667788877888999999998876 8889999999999998877543
Q ss_pred CceeEEEeecC-CcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCc
Q psy2113 88 GAIVKSTFSSH-KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNS 165 (183)
Q Consensus 88 ~~~~~~~~~~~-~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~ 165 (183)
.....++ ...+.....+| ++++|+..+..|.|.+....+++. +..+ ..++.|..+.|+ ++..|++++.+|.
T Consensus 295 ----~~~~~g~e~~~~e~FeVSh-d~~fia~~G~~G~I~lLhakT~el-i~s~-KieG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 295 ----LKPPYGVEEKSMERFEVSH-DSNFIAIAGNNGHIHLLHAKTKEL-ITSF-KIEGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred ----ccCCCCcccchhheeEecC-CCCeEEEcccCceEEeehhhhhhh-hhee-eeccEEeeEEEecCCcEEEEEcCCce
Confidence 2333333 34567788899 888999999999999998888774 3333 456789999998 5588888899999
Q ss_pred EEEEEecCCCC
Q psy2113 166 VRVFKTKHQPK 176 (183)
Q Consensus 166 i~iwd~~~~~~ 176 (183)
|.+||+++...
T Consensus 368 V~v~nl~~~~~ 378 (514)
T KOG2055|consen 368 VYVWNLRQNSC 378 (514)
T ss_pred EEEEecCCcce
Confidence 99999998743
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.1e-12 Score=88.43 Aligned_cols=160 Identities=12% Similarity=0.120 Sum_probs=120.5
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEec-cCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKG-HKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
.+.++.|+..+.+++.+. ..+|.+..... ....+++..... |...|+|++|...+. +.+|..+++|.+.|+++
T Consensus 58 CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~-~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt 136 (609)
T KOG4227|consen 58 CINALQFSHNDRFLASGGDDMHGRVWNVDELMV-RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIET 136 (609)
T ss_pred ccceeeeccCCeEEeecCCcceeeeechHHHHh-hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeeccc
Confidence 467899999999999876 66787665432 223355555433 558999999996665 88999999999999998
Q ss_pred CCCccCceeEEEeecCC---cceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEE--eccCCCcEEEEEecCC--c
Q psy2113 83 GGMKKGAIVKSTFSSHK---EWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFD--MLGHEDKVMCVNWSDY--R 155 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~---~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~--~ 155 (183)
.+. + ....|. +.|..+..+| ..+.+++.+.++.|.+||.+....+... .......-..+-|+|. .
T Consensus 137 ~qs------i-~V~~~~~~~~~VY~m~~~P-~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~ 208 (609)
T KOG4227|consen 137 KQS------I-YVANENNNRGDVYHMDQHP-TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPA 208 (609)
T ss_pred cee------e-eeecccCcccceeecccCC-CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCce
Confidence 764 2 233343 4899999999 6889999999999999999976633332 2233456688889975 7
Q ss_pred EEEEecCCCcEEEEEecCCCCC
Q psy2113 156 YIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 156 ~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+|++.+..+-+.+||.+.+..+
T Consensus 209 Li~~~~~~~G~~~~D~R~~~~~ 230 (609)
T KOG4227|consen 209 LILVNSETGGPNVFDRRMQARP 230 (609)
T ss_pred eEEeccccCCCCceeeccccch
Confidence 8889999999999999987654
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.6e-12 Score=95.05 Aligned_cols=167 Identities=20% Similarity=0.254 Sum_probs=118.3
Q ss_pred ceeEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC---CeEEEEeCCCeEEEEE
Q psy2113 8 ILTLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV---DEIITSSWDHTLKIWD 79 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~~~d~~v~vwd 79 (183)
..+..+.|+|....+.+++ +-+|++....... ....-.....|..++..+.|..+ ..+++++.||.|..|+
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~-~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP-PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 3567788999776665554 5666655432211 11111223468899999999732 3499999999999999
Q ss_pred cCCCCCc---------------------------------------------------cCc------eeEEEeecCCcce
Q psy2113 80 AELGGMK---------------------------------------------------KGA------IVKSTFSSHKEWV 102 (183)
Q Consensus 80 ~~~~~~~---------------------------------------------------~~~------~~~~~~~~~~~~v 102 (183)
++.-... ... .....+..|.++|
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v 401 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPV 401 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcce
Confidence 7642221 001 1122345678899
Q ss_pred EEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCCC
Q psy2113 103 QSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 103 ~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.++.++|-...++++++ |..+++|.......|+..+..+...|++++|+|. ..++++..||.|.+||+.....
T Consensus 402 ~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~ 476 (555)
T KOG1587|consen 402 YAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE 476 (555)
T ss_pred EeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc
Confidence 99999996666666666 9999999988555568888888889999999976 6889999999999999887544
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.5e-12 Score=95.38 Aligned_cols=164 Identities=21% Similarity=0.290 Sum_probs=119.5
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccce-EEEeccCCCeeEEEEccC--C-eEEEEeCCCeEEEE
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPL-ITLKGHKEAISAVQWTAV--D-EIITSSWDHTLKIW 78 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~--~-~l~s~~~d~~v~vw 78 (183)
-..+..++|+.+|.+++.+. +-+|+. ...+++ ..-.+|...|+++.|-|. + .+++|+.|..|+++
T Consensus 50 ~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~-------~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 50 TGCVNCLEWNADGELLASGSDDTRLIVWDP-------FEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred cceecceeecCCCCEEeecCCcceEEeecc-------hhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 34567889999999999876 556753 233333 344789999999999863 3 38899999999999
Q ss_pred EcCCCCCc----cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceE---------EeccCCCc
Q psy2113 79 DAELGGMK----KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLF---------DMLGHEDK 145 (183)
Q Consensus 79 d~~~~~~~----~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~---------~~~~~~~~ 145 (183)
|+...+.. ........+.+|...|..++..|..++.+.+++.||+|+-+|++....... .+....-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 99852211 112224456789999999999996668999999999999999997432111 11122234
Q ss_pred EEEEEecCC--cEEEEecCCCcEEEEEecCCCCC
Q psy2113 146 VMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 146 v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
..++..+|. .+|+.|+.|-..++||.+...++
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks 236 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKS 236 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccC
Confidence 567778864 79999999999999997655443
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.6e-13 Score=97.62 Aligned_cols=152 Identities=25% Similarity=0.341 Sum_probs=120.0
Q ss_pred ceeceeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEc
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDA 80 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~ 80 (183)
+-+.....+.|+|....+.++. +++|++ .....+..+......|.+++.+|.| .|+.|+.|+.+..+|+
T Consensus 564 kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL-------~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDl 636 (733)
T KOG0650|consen 564 KSKGLVQRVKFHPSKPYLFVATQRSVRIYDL-------SKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDL 636 (733)
T ss_pred hcCCceeEEEecCCCceEEEEeccceEEEeh-------hHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEc
Confidence 3455677889999998888776 556643 3445555666667788999999765 5999999999999998
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC------CC--CcceEEeccCCCc----EEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR------SP--KVPLFDMLGHEDK----VMC 148 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~------~~--~~~~~~~~~~~~~----v~~ 148 (183)
.-... +...+..|...+..++|++ .-.++++|+.||.+.|+--. .. -.++..+.+|... |..
T Consensus 637 dlssk-----Pyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd 710 (733)
T KOG0650|consen 637 DLSSK-----PYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLD 710 (733)
T ss_pred ccCcc-----hhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEe
Confidence 75432 2567778999999999999 88899999999999988432 11 1356788888876 889
Q ss_pred EEecCC-cEEEEecCCCcEEEE
Q psy2113 149 VNWSDY-RYIMSGGQDNSVRVF 169 (183)
Q Consensus 149 ~~~~~~-~~l~~~~~dg~i~iw 169 (183)
+.|+|. ..|++++.||+|++|
T Consensus 711 ~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 711 TIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccCCCceEEecCCCceEEee
Confidence 999987 899999999999998
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.8e-11 Score=84.18 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=97.8
Q ss_pred eEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EE-EEeCCCeEEEEEcCC
Q psy2113 10 TLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-II-TSSWDHTLKIWDAEL 82 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~v~vwd~~~ 82 (183)
..+++|+|++..+.+.. +.+|+. ...+....+..+.. +..+.|+|++. ++ +++.++.+++||+++
T Consensus 33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~-------~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 33 PRGITLSKDGKLLYVCASDSDTIQVIDL-------ATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred CCceEECCCCCEEEEEECCCCeEEEEEC-------CCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 35688999998764332 444432 23344444544433 46788998876 43 456689999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC-eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEE-E
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN-SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIM-S 159 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~-~ 159 (183)
... ...+. +...+.+++|+| ++.+++++..++ .+.+||.++.+. ..... ....+..+.|+++ ..++ +
T Consensus 105 ~~~------~~~~~-~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~ 174 (300)
T TIGR03866 105 RKV------LAEIP-VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEI-VDNVL-VDQRPRFAEFTADGKELWVS 174 (300)
T ss_pred CeE------EeEee-CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeE-EEEEE-cCCCccEEEECCCCCEEEEE
Confidence 543 33333 234468899999 888888887765 577889987664 22222 2334577899965 5564 5
Q ss_pred ecCCCcEEEEEecCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~ 176 (183)
+..++.|++||+++++.
T Consensus 175 ~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKV 191 (300)
T ss_pred cCCCCEEEEEEcCccee
Confidence 55699999999987653
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.2e-12 Score=93.30 Aligned_cols=123 Identities=20% Similarity=0.392 Sum_probs=93.3
Q ss_pred CCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCc----------------------cCceeEEEeecCCcceEEEEE
Q psy2113 52 KEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMK----------------------KGAIVKSTFSSHKEWVQSVRW 107 (183)
Q Consensus 52 ~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~----------------------~~~~~~~~~~~~~~~v~~~~~ 107 (183)
+..|+++.|-|. +.++.+-.+|.++++|....... ....++..+.--.+.|+..+|
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~F 298 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAF 298 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeE
Confidence 368999999965 45888899999999986421110 000112222223457899999
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 108 ~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+| ++.+|++.+.||.++|+|..+.+. ....+..-+...|++|+|+ ++|++|+.|.-|.||.+...+.
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt~eL-lg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV 366 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDTQEL-LGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV 366 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccHHHH-HHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceE
Confidence 99 999999999999999999998764 4445555578899999976 9999999999999999887653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-10 Score=85.23 Aligned_cols=152 Identities=31% Similarity=0.519 Sum_probs=113.9
Q ss_pred EEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EE-EEeCCCeEEEEEcCCC
Q psy2113 11 LGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-II-TSSWDHTLKIWDAELG 83 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~v~vwd~~~~ 83 (183)
.++.|+|++..+.... +.+| +......+..+.+|...|.+++|+|++. ++ +++.|+.+++||....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~ 231 (466)
T COG2319 159 TSLAFSPDGKLLASGSSLDGTIKLW-------DLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231 (466)
T ss_pred EEEEECCCCCEEEecCCCCCceEEE-------EcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCC
Confidence 4788999997555542 3333 3333667788888999999999998875 44 4489999999987744
Q ss_pred CCccCceeEE-EeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcEEEEec
Q psy2113 84 GMKKGAIVKS-TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYIMSGG 161 (183)
Q Consensus 84 ~~~~~~~~~~-~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~ 161 (183)
.. .. .+.+|.... ...|+| ++..+++++.|+.+++|+.+...........|...+.++.|.| +..+++++
T Consensus 232 ~~------~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 303 (466)
T COG2319 232 KL------LRSTLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGS 303 (466)
T ss_pred cE------EeeecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEee
Confidence 32 33 466777765 338999 6678889999999999999976642333367889999999997 47777788
Q ss_pred CCCcEEEEEecCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKS 177 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~ 177 (183)
.|+.+.+||.+.....
T Consensus 304 ~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 304 SDGTVRLWDLETGKLL 319 (466)
T ss_pred CCCcEEEEEcCCCceE
Confidence 8988999988776543
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-13 Score=103.14 Aligned_cols=152 Identities=24% Similarity=0.434 Sum_probs=119.5
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
++..+|...|+.+..+. +++|+ ..+..++....||.+.|+.++.+.++. +++++.|..|++|.+..+.
T Consensus 193 Vyca~fDrtg~~Iitgsdd~lvKiwS-------~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~ 265 (1113)
T KOG0644|consen 193 VYCAIFDRTGRYIITGSDDRLVKIWS-------METARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA 265 (1113)
T ss_pred eeeeeeccccceEeecCccceeeeee-------ccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc
Confidence 45667889998887765 77775 456677888999999999999987665 7899999999999998877
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC-CCCc-----------------------------
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR-SPKV----------------------------- 134 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~-~~~~----------------------------- 134 (183)
. +..+.+|.+.|++++|+| -. +.+.||++++||.+ ....
T Consensus 266 p------vsvLrghtgavtaiafsP-~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tg 334 (1113)
T KOG0644|consen 266 P------VSVLRGHTGAVTAIAFSP-RA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTG 334 (1113)
T ss_pred h------HHHHhccccceeeeccCc-cc----cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccc
Confidence 5 667899999999999999 32 66789999999988 1110
Q ss_pred ----------------------------------------------------ceEEeccCCCcEEEEEecCC--cEEEEe
Q psy2113 135 ----------------------------------------------------PLFDMLGHEDKVMCVNWSDY--RYIMSG 160 (183)
Q Consensus 135 ----------------------------------------------------~~~~~~~~~~~v~~~~~~~~--~~l~~~ 160 (183)
..+.+.+|.+.+..+.++|- ....++
T Consensus 335 s~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msa 414 (1113)
T KOG0644|consen 335 SRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSA 414 (1113)
T ss_pred cCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhc
Confidence 12333467778888888853 566789
Q ss_pred cCCCcEEEEEecCCCCCCC
Q psy2113 161 GQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~~~~~ 179 (183)
+.||...|||+-.+.+...
T Consensus 415 g~dgst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 415 GYDGSTIIWDIWEGIPIKH 433 (1113)
T ss_pred cCCCceEeeecccCCccee
Confidence 9999999999887766543
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-11 Score=84.10 Aligned_cols=124 Identities=22% Similarity=0.369 Sum_probs=102.2
Q ss_pred EEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEE
Q psy2113 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125 (183)
Q Consensus 47 ~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 125 (183)
.+.--..+|+|.+|++++. ++.+-....+.||....... ....+.+..|...|+.++|+| ..+.|++|+.|..-+
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~---w~~~htls~Hd~~vtgvdWap-~snrIvtcs~drnay 80 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL---WEPAHTLSEHDKIVTGVDWAP-KSNRIVTCSHDRNAY 80 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCC---ceeceehhhhCcceeEEeecC-CCCceeEccCCCCcc
Confidence 3444567999999998876 77888888999999876552 223678889999999999999 888999999999999
Q ss_pred EEeCCCCC--cceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 126 LWDLRSPK--VPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 126 vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
||....+. .+...+..++..+++|.|+|. +.|++|+....|.||-++..
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence 99995432 235567778899999999976 89999999999999988765
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=8e-12 Score=95.50 Aligned_cols=157 Identities=19% Similarity=0.307 Sum_probs=119.2
Q ss_pred EEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC----eEEEEeCCCeEEEEEcCCCC
Q psy2113 12 GVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD----EIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~s~~~d~~v~vwd~~~~~ 84 (183)
.-.|++|++.+.+.. +.++ ...++..+..+.+|..++.++.+.|.. .+.+++.+|.|++||...+.
T Consensus 21 ~avfSnD~k~l~~~~~~~V~Vy-------S~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~ 93 (792)
T KOG1963|consen 21 PAVFSNDAKFLFLCTGNFVKVY-------STATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGE 93 (792)
T ss_pred ccccccCCcEEEEeeCCEEEEE-------ecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcE
Confidence 346888998877654 6666 445677778999999999999998542 36799999999999987654
Q ss_pred Cc------------------------------------------------------------------------------
Q psy2113 85 MK------------------------------------------------------------------------------ 86 (183)
Q Consensus 85 ~~------------------------------------------------------------------------------ 86 (183)
+.
T Consensus 94 Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge 173 (792)
T KOG1963|consen 94 LLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE 173 (792)
T ss_pred EEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce
Confidence 32
Q ss_pred ---------------cCce---e-EEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCC---CCcceEEeccCCC
Q psy2113 87 ---------------KGAI---V-KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS---PKVPLFDMLGHED 144 (183)
Q Consensus 87 ---------------~~~~---~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~---~~~~~~~~~~~~~ 144 (183)
+... . ...-..|...+++.+++| .++++++|..||.|.+|.=-. .......+.-|..
T Consensus 174 ~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~ 252 (792)
T KOG1963|consen 174 FKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD 252 (792)
T ss_pred EEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEeccc
Confidence 0000 0 000012445578999999 899999999999999995432 2233567888999
Q ss_pred cEEEEEec-CCcEEEEecCCCcEEEEEecCCCC
Q psy2113 145 KVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 145 ~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.|++++|+ ++.+|++|+.+|.+-+|.+.++++
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k 285 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK 285 (792)
T ss_pred ccceeEEecCCceEeecccceEEEEEeecCCCc
Confidence 99999999 559999999999999999999874
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.2e-12 Score=87.87 Aligned_cols=116 Identities=16% Similarity=0.220 Sum_probs=99.8
Q ss_pred CeeEEEEccC---CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 54 AISAVQWTAV---DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 54 ~v~~~~~~~~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
.++++.|-+. ..|++++..+.+++||.+.+.. +...+.--..+++++...| +++++++|..-+.+..+|.+
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-----PV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r 277 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-----PVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLR 277 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCc-----ceeEeccccCcceeeeecC-CCcEEEEecccchhheeccc
Confidence 3567788744 5599999999999999986554 2555655678899999999 89999999999999999999
Q ss_pred CCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 131 SPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
.++.+...+.+..+.+.++..+|+ .++++++-|+.+||+|+.+.+
T Consensus 278 ~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 278 GGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred CceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 998766678899999999999987 899999999999999999844
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=95.80 Aligned_cols=121 Identities=17% Similarity=0.272 Sum_probs=100.4
Q ss_pred EEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEE
Q psy2113 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125 (183)
Q Consensus 47 ~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 125 (183)
.+.+|.+.|+++.|+.++. +++.|.|+++|+|++++.+.. .....+|+..|..+.+.| . .+++++.|-+.+
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~-----~~~~fgHsaRvw~~~~~~-n--~i~t~gedctcr 241 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL-----GCTGFGHSARVWACCFLP-N--RIITVGEDCTCR 241 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc-----CcccccccceeEEEEecc-c--eeEEeccceEEE
Confidence 6789999999999996655 899999999999999987653 235568999999999998 4 999999999999
Q ss_pred EEeCCCCCcceEEeccCC-CcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 126 LWDLRSPKVPLFDMLGHE-DKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 126 vwd~~~~~~~~~~~~~~~-~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+|+..... ...+..|. ..+..++..++ ..+++++.|+.+++||+......
T Consensus 242 vW~~~~~~--l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e 293 (967)
T KOG0974|consen 242 VWGVNGTQ--LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLE 293 (967)
T ss_pred EEecccce--ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccc
Confidence 99776543 44666665 46788998866 78899999999999998765543
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=3e-12 Score=94.59 Aligned_cols=154 Identities=16% Similarity=0.284 Sum_probs=115.1
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGA 89 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 89 (183)
...+.|+..|.++++.....-.-..+.-+.........|.-..+.|.++.|+|....+-.+....|++||+.....
T Consensus 524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqel---- 599 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQEL---- 599 (733)
T ss_pred cceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHH----
Confidence 3467788889888876532211111111223333345555567789999999886644444567999999976544
Q ss_pred eeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEE
Q psy2113 90 IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRV 168 (183)
Q Consensus 90 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~i 168 (183)
...+......|..++.+| .|..++.|+.|+.+..+|+.-...+...+.-|...+++|+|++. .++++|+.||++.|
T Consensus 600 --vKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V 676 (733)
T KOG0650|consen 600 --VKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV 676 (733)
T ss_pred --HHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence 223444566799999999 88899999999999999999887778899999999999999987 89999999999988
Q ss_pred EE
Q psy2113 169 FK 170 (183)
Q Consensus 169 wd 170 (183)
+-
T Consensus 677 fh 678 (733)
T KOG0650|consen 677 FH 678 (733)
T ss_pred Ee
Confidence 74
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.5e-12 Score=91.88 Aligned_cols=139 Identities=16% Similarity=0.196 Sum_probs=103.7
Q ss_pred cccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCc-----ceEEEEEecCC
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE-----WVQSVRWSPID 111 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~ 111 (183)
+..++.-+..+....+.++++..++.+ .|++|+.+|.|..||.+........-....+..|.+ .|+++.|+- +
T Consensus 161 NLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d-~ 239 (703)
T KOG2321|consen 161 NLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRD-D 239 (703)
T ss_pred EccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecC-C
Confidence 667888888888888999999999764 577778899999999987654322111222233433 499999997 6
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC---cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 112 PQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY---RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+-.++.|..+|.+.+||+++.++....-.+..-+|..+.|.+. ..++ ......++|||-.+++...
T Consensus 240 gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~-S~Dk~~~kiWd~~~Gk~~a 308 (703)
T KOG2321|consen 240 GLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVV-SMDKRILKIWDECTGKPMA 308 (703)
T ss_pred ceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEE-ecchHHhhhcccccCCcee
Confidence 8899999999999999999988644444555678999999743 3444 3455679999988877543
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.5e-12 Score=91.64 Aligned_cols=122 Identities=22% Similarity=0.465 Sum_probs=94.7
Q ss_pred ccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC
Q psy2113 42 KTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 42 ~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
.+......+|.+.+.+-.|+|+|. |++++.||.|++|.- ++.. ...+.....+|.|++|.|+..+.+.+.+
T Consensus 94 ~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGML------RStl~Q~~~~v~c~~W~p~S~~vl~c~g- 165 (737)
T KOG1524|consen 94 ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGML------RSTVVQNEESIRCARWAPNSNSIVFCQG- 165 (737)
T ss_pred chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchH------HHHHhhcCceeEEEEECCCCCceEEecC-
Confidence 344456788999999999999988 999999999999974 3333 2334445678999999995555555443
Q ss_pred CCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecC
Q psy2113 121 DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 121 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 173 (183)
+.+.+=-+..... +...++|.+-|.+++|++. +.+++|+.|-..++||-..
T Consensus 166 -~h~~IKpL~~n~k-~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 166 -GHISIKPLAANSK-IIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG 217 (737)
T ss_pred -CeEEEeecccccc-eeEEeccCcEEEEeecCccccceeecCCceeEEeecccC
Confidence 4555555555444 6788999999999999965 8999999999999999653
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.5e-11 Score=91.64 Aligned_cols=126 Identities=21% Similarity=0.413 Sum_probs=97.3
Q ss_pred cceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC
Q psy2113 43 TPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
+.+..+..|.++|+.+.++|=.. +++++ |-+++||....... ++..+..+...+++++|+|.....|+++..
T Consensus 389 ~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~-----Pl~~~~~~~~~v~~vaWSptrpavF~~~d~ 462 (555)
T KOG1587|consen 389 KGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS-----PLLSLDSSPDYVTDVAWSPTRPAVFATVDG 462 (555)
T ss_pred cccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC-----cchhhhhccceeeeeEEcCcCceEEEEEcC
Confidence 44556778999999999997644 55555 99999999763221 144566677789999999977889999999
Q ss_pred CCeEEEEeCCCCC-cceEEeccCCCcEEEEEecC-CcEEEEecCCCcEEEEEecCC
Q psy2113 121 DNSVKLWDLRSPK-VPLFDMLGHEDKVMCVNWSD-YRYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 121 dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~ 174 (183)
||.+.+||+.... .|+....-+....+.+.|++ +..|++|...|.+++|++...
T Consensus 463 ~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 463 DGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 9999999997543 33444444455667888886 699999999999999999643
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-11 Score=86.24 Aligned_cols=90 Identities=16% Similarity=0.381 Sum_probs=74.9
Q ss_pred cccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEE
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 116 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 116 (183)
......++.++.+|.+.+.++.|.+.+ .|.+|..|..+.+||+...+.. ...+.+|...|..++..+ ....+.
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~-----~~el~gh~~kV~~l~~~~-~t~~l~ 256 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT-----AYELQGHNDKVQALSYAQ-HTRQLI 256 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce-----eeeeccchhhhhhhhhhh-hheeee
Confidence 445667788999999999999999765 5899999999999999765432 446778999999998887 677899
Q ss_pred EEeCCCeEEEEeCCCCC
Q psy2113 117 SASFDNSVKLWDLRSPK 133 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~~ 133 (183)
+++.||.|.+||++..+
T Consensus 257 S~~edg~i~~w~mn~~r 273 (404)
T KOG1409|consen 257 SCGEDGGIVVWNMNVKR 273 (404)
T ss_pred eccCCCeEEEEecccee
Confidence 99999999999997543
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.5e-11 Score=79.73 Aligned_cols=114 Identities=17% Similarity=0.295 Sum_probs=85.1
Q ss_pred CCeeEEEEccC-CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q psy2113 53 EAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS 131 (183)
Q Consensus 53 ~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 131 (183)
..|+++-..|. +.++.++.|+.++-||+++++. ...+++|...++++.... ....+++|+.||++++||.++
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i------~r~~rGHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt 187 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRI------QREYRGHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKT 187 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEE------EEEEcCCcceeeeeeecc-cCcceeecCCCccEEEEeccc
Confidence 36788888765 5577777999999999999886 668999999999998754 455899999999999999999
Q ss_pred CCcceEEeccCC----------CcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 132 PKVPLFDMLGHE----------DKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 132 ~~~~~~~~~~~~----------~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.++ +..+.... ..|-+++-+. ..+++|+ .-.+.+|.++..+.
T Consensus 188 ~k~-v~~ie~yk~~~~lRp~~g~wigala~~e-dWlvCGg-Gp~lslwhLrsse~ 239 (325)
T KOG0649|consen 188 QKH-VSMIEPYKNPNLLRPDWGKWIGALAVNE-DWLVCGG-GPKLSLWHLRSSES 239 (325)
T ss_pred cce-eEEeccccChhhcCcccCceeEEEeccC-ceEEecC-CCceeEEeccCCCc
Confidence 886 44443211 2234444332 4555554 46799999987654
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-11 Score=82.25 Aligned_cols=160 Identities=17% Similarity=0.258 Sum_probs=110.5
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCc
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMK 86 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~ 86 (183)
.++++.|++.+.-+.+...+. ++..........+.++..+.|.-++....|+.. +.+.+|+.|+.+.-||++.++.
T Consensus 123 ~~lslD~~~~~~~i~vs~s~G-~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~- 200 (339)
T KOG0280|consen 123 EALSLDISTSGTKIFVSDSRG-SISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT- 200 (339)
T ss_pred eeeEEEeeccCceEEEEcCCC-cEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc-
Confidence 478888999888877765221 111111122233445688999999999999833 4588999999999999983321
Q ss_pred cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEecCCC
Q psy2113 87 KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDN 164 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg 164 (183)
...+..+.|...|.++.-+|..+.+++||+.|..|++||.|+...|+..- ...+.|+.+.++|. ..++.++.-.
T Consensus 201 ---~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~~~~~lL~~CMh~ 276 (339)
T KOG0280|consen 201 ---FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPEIFHRLLAACMHN 276 (339)
T ss_pred ---eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecchhhhHHHHHHHhc
Confidence 12333556888999999998788999999999999999999765544432 33478999999975 3344444444
Q ss_pred cEEEEEecCC
Q psy2113 165 SVRVFKTKHQ 174 (183)
Q Consensus 165 ~i~iwd~~~~ 174 (183)
-.+|-+.+.+
T Consensus 277 G~ki~~~~~~ 286 (339)
T KOG0280|consen 277 GAKILDSSDK 286 (339)
T ss_pred CceEEEeccc
Confidence 4555555544
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=5e-11 Score=84.21 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=104.9
Q ss_pred eEEEEEeecCcEEEEEEeccCC-CCcccccccCccceEEEeccCCCeeEEEEccC-CeEE---EEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTS-LPSFFQLILQKTPLITLKGHKEAISAVQWTAV-DEII---TSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~---s~~~d~~v~vwd~~~~~ 84 (183)
.....+++++++++..+..--. +..+..+....+.+..... ...-+.+.|... .... ..+....+.+|....+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC
Confidence 3455678888998887733111 1111111111222222222 222234444422 2222 23344555566554332
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDN 164 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg 164 (183)
....-+|-..++.++++| ++++|+++..|..|++-.....-..-..+.||..-|..++.-++..|++++.|+
T Consensus 144 -------~~~~lGhvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~~LlS~sGD~ 215 (390)
T KOG3914|consen 144 -------CEPILGHVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNYLLLSGSGDK 215 (390)
T ss_pred -------cchhhhhhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCceeeecCCCC
Confidence 334668999999999999 789999999999999988776554345567899999999999998899999999
Q ss_pred cEEEEEecCCCCC
Q psy2113 165 SVRVFKTKHQPKS 177 (183)
Q Consensus 165 ~i~iwd~~~~~~~ 177 (183)
+|++||+++++..
T Consensus 216 tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 216 TLRLWDITSGKLL 228 (390)
T ss_pred cEEEEecccCCcc
Confidence 9999999998875
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.33 E-value=8e-10 Score=81.00 Aligned_cols=126 Identities=31% Similarity=0.563 Sum_probs=102.0
Q ss_pred ccceEEEeccCCCeeEEEEccCCe-EEEEeC-CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCC-EEEEE
Q psy2113 42 KTPLITLKGHKEAISAVQWTAVDE-IITSSW-DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQ-LFVSA 118 (183)
Q Consensus 42 ~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~ 118 (183)
......+..|...|..+.|+|++. +++++. ++.+++|+...... ...+.+|...+.+++|+| ++. .++++
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~-~~~~~~~~~ 217 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKP------LSTLAGHTDPVSSLAFSP-DGGLLIASG 217 (466)
T ss_pred CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCce------EEeeccCCCceEEEEEcC-CcceEEEEe
Confidence 566778889999999999999885 677775 99999999987443 556777999999999998 665 56666
Q ss_pred eCCCeEEEEeCCCCCcceE-EeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 119 SFDNSVKLWDLRSPKVPLF-DMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 119 ~~dg~i~vwd~~~~~~~~~-~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+.|+.+++||...+.. .. .+.+|...+ ...|++. ..+++++.|+.+++|+++....
T Consensus 218 ~~d~~i~~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 218 SSDGTIRLWDLSTGKL-LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred cCCCcEEEEECCCCcE-EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 8999999999886654 44 577887775 4478866 5888999999999999987654
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.6e-11 Score=86.98 Aligned_cols=114 Identities=20% Similarity=0.297 Sum_probs=87.9
Q ss_pred eEEEEccC-CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc
Q psy2113 56 SAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV 134 (183)
Q Consensus 56 ~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~ 134 (183)
..++|+.+ ..+++++.||++|+|+..+... ......|...|.++.|+| ++.+|++.+.| ..+||+.+++..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t------~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT------ILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAA 219 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh------hhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCch
Confidence 57889876 5599999999999999665443 445667999999999999 89999999999 999999998721
Q ss_pred c---------------------------e----------EE-----ec-----------cCCCcEEEEEecC-CcEEEEe
Q psy2113 135 P---------------------------L----------FD-----ML-----------GHEDKVMCVNWSD-YRYIMSG 160 (183)
Q Consensus 135 ~---------------------------~----------~~-----~~-----------~~~~~v~~~~~~~-~~~l~~~ 160 (183)
. + .. .. .....|.+++.++ +++++.|
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG 299 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG 299 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence 0 0 00 00 0123678888885 5999999
Q ss_pred cCCCcEEEEEecCCCCC
Q psy2113 161 GQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~~~ 177 (183)
+.||.|.|++..+.+..
T Consensus 300 T~dGsVai~~~~~lq~~ 316 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRL 316 (398)
T ss_pred ccCCcEEEEEeceeeee
Confidence 99999999998876543
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.5e-12 Score=92.33 Aligned_cols=148 Identities=14% Similarity=0.175 Sum_probs=110.4
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKG 88 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~ 88 (183)
+.-+.|.|-.-++++.+-..|- .+++...++.+..+..-.+.+..++-+|-+- +-.|...|+|.+|.....+.
T Consensus 212 v~rLeFLPyHfLL~~~~~~G~L---~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP--- 285 (545)
T KOG1272|consen 212 VARLEFLPYHFLLVAASEAGFL---KYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP--- 285 (545)
T ss_pred hhhhcccchhheeeecccCCce---EEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch---
Confidence 3445666666666665533221 1336667778888887888888898888765 67899999999999877665
Q ss_pred ceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEE
Q psy2113 89 AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRV 168 (183)
Q Consensus 89 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i 168 (183)
+..+.+|.++|.++++.| +|++++|.+.|..++|||+++-.. +..... .-+...++++....|+.+- ...+.|
T Consensus 286 ---LvKiLcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~q-l~t~~t-p~~a~~ls~SqkglLA~~~-G~~v~i 358 (545)
T KOG1272|consen 286 ---LVKILCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQ-LHTYRT-PHPASNLSLSQKGLLALSY-GDHVQI 358 (545)
T ss_pred ---HHHHHhcCCCcceEEECC-CCcEEeecccccceeEeeeccccc-cceeec-CCCccccccccccceeeec-CCeeee
Confidence 556778999999999999 999999999999999999998775 333333 3466778888766666544 457888
Q ss_pred EE
Q psy2113 169 FK 170 (183)
Q Consensus 169 wd 170 (183)
|.
T Consensus 359 w~ 360 (545)
T KOG1272|consen 359 WK 360 (545)
T ss_pred eh
Confidence 84
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-12 Score=91.13 Aligned_cols=126 Identities=19% Similarity=0.290 Sum_probs=102.9
Q ss_pred cceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 43 TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
.++..++.| ..|..+.|-|-.. |++++..|.++.-|+..++. ...+....+.+..++-+| -...+-+|...
T Consensus 201 tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl------Va~~~t~~G~~~vm~qNP-~NaVih~Ghsn 272 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL------VASIRTGAGRTDVMKQNP-YNAVIHLGHSN 272 (545)
T ss_pred cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhh------hHHHHccCCccchhhcCC-ccceEEEcCCC
Confidence 334444422 3577888888876 67888899999999998886 445666677888889999 66689999999
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
|+|.+|.....+. +..+..|.++|.++++.++ .+++|.+.|..++|||++...+.
T Consensus 273 GtVSlWSP~skeP-LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql 328 (545)
T KOG1272|consen 273 GTVSLWSPNSKEP-LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL 328 (545)
T ss_pred ceEEecCCCCcch-HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence 9999999987665 7788899999999999965 99999999999999999987643
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.3e-11 Score=88.34 Aligned_cols=134 Identities=19% Similarity=0.244 Sum_probs=93.1
Q ss_pred EEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCC
Q psy2113 11 LGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~ 85 (183)
++-.|+|+|.-+...+ +++|+- .+....++.....+|+|++|.|+.. ++-| ..+.+.+=.+..+..
T Consensus 108 ~~gRW~~dGtgLlt~GEDG~iKiWSr--------sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c-~g~h~~IKpL~~n~k 178 (737)
T KOG1524|consen 108 SSGRWSPDGAGLLTAGEDGVIKIWSR--------SGMLRSTVVQNEESIRCARWAPNSNSIVFC-QGGHISIKPLAANSK 178 (737)
T ss_pred hhcccCCCCceeeeecCCceEEEEec--------cchHHHHHhhcCceeEEEEECCCCCceEEe-cCCeEEEeecccccc
Confidence 3445788887665543 777753 3333344555677999999998755 4333 345666655543322
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecC
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQ 162 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 162 (183)
....+.|++-|.++.|+| ..+++++|+.|-..++||-.... +.....|+-+|++++|+|+..++.++.
T Consensus 179 ------~i~WkAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~G~~--Lf~S~~~ey~ITSva~npd~~~~v~S~ 246 (737)
T KOG1524|consen 179 ------IIRWRAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQGAN--LFTSAAEEYAITSVAFNPEKDYLLWSY 246 (737)
T ss_pred ------eeEEeccCcEEEEeecCc-cccceeecCCceeEEeecccCcc--cccCChhccceeeeeeccccceeeeee
Confidence 345788999999999999 88999999999999999986533 566667777888888887755555543
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.3e-10 Score=79.37 Aligned_cols=120 Identities=22% Similarity=0.282 Sum_probs=92.1
Q ss_pred eEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc
Q psy2113 56 SAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV 134 (183)
Q Consensus 56 ~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~ 134 (183)
.++.|++.+. ++++-.+|.+.+-+.......+ .+..+.|.-+.+...|+..+++++.+|+.|+.+..||+|-+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~----vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEK----VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeee----cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 4567776554 7888888888854443333211 3467789999999999987889999999999999999994443
Q ss_pred ceE-EeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCCCCCC
Q psy2113 135 PLF-DMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 135 ~~~-~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~ 179 (183)
.+. ..+.|...|.++.-+|. .++++|+.|-.|++||.|+..++-.
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~ 248 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF 248 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc
Confidence 233 35678889999998853 7999999999999999998776643
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-10 Score=88.04 Aligned_cols=158 Identities=15% Similarity=0.193 Sum_probs=105.6
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccC---CCeeEEEEccC---CeEEEEeCCCeEEEEE
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHK---EAISAVQWTAV---DEIITSSWDHTLKIWD 79 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~---~~l~s~~~d~~v~vwd 79 (183)
.-.+.|+|....+++.+ +.+|+ ....+.+..|..+. ..|+.+.+.+. ..+++|+.||.|+||+
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd-------~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWD-------WEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEe-------cccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 34566888888777766 55553 33444445554433 36888888733 3388999999999997
Q ss_pred cCCCCCc-------------------------------------cCceeEEEe------------ecCCcceEEEEEecC
Q psy2113 80 AELGGMK-------------------------------------KGAIVKSTF------------SSHKEWVQSVRWSPI 110 (183)
Q Consensus 80 ~~~~~~~-------------------------------------~~~~~~~~~------------~~~~~~v~~~~~~p~ 110 (183)
--..... .....+... .+....|+++.-+-.
T Consensus 1140 ~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1140 DYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred ccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 4322100 000000000 112334566655443
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCc--ceEEeccCCCc--EEEEEecC-C-cEEEEecCCCcEEEEEecCC
Q psy2113 111 DPQLFVSASFDNSVKLWDLRSPKV--PLFDMLGHEDK--VMCVNWSD-Y-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~--v~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
.++++++|..||.|++||.|.... ++...+.|... |..+.+.+ + ..|++|+.||.|++||+|..
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccC
Confidence 578999999999999999996543 57778888877 99998885 4 67999999999999999985
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.2e-10 Score=86.39 Aligned_cols=156 Identities=14% Similarity=0.168 Sum_probs=112.9
Q ss_pred EEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC-CCC
Q psy2113 11 LGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL-GGM 85 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~-~~~ 85 (183)
-.+++++.|....+.- +.+|..+... ........-..|...+++.+++|++. +++|..||+|.+|.--. ...
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~---~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~ 240 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHT---KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD 240 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccc---eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc
Confidence 4567777777655533 4444433211 01111112234667789999998876 78899999999997433 111
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCC
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDN 164 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg 164 (183)
.. ....+.-|...|.+++|++ +|.+|++|+.+|.+-+|.+.+++ ...++.-.++|..+.++|+ .+.+....|.
T Consensus 241 ~~---t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 241 SE---TCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred cc---cceEEEecccccceeEEec-CCceEeecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCc
Confidence 11 1345667999999999999 89999999999999999999987 4667778889999999976 7888888999
Q ss_pred cEEEEEecCCC
Q psy2113 165 SVRVFKTKHQP 175 (183)
Q Consensus 165 ~i~iwd~~~~~ 175 (183)
+|.+-...+..
T Consensus 315 qI~li~~~dl~ 325 (792)
T KOG1963|consen 315 QIHLIKASDLE 325 (792)
T ss_pred eEEEEeccchh
Confidence 99998875443
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=6e-10 Score=82.40 Aligned_cols=115 Identities=14% Similarity=0.200 Sum_probs=87.5
Q ss_pred EEEEc-cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcc
Q psy2113 57 AVQWT-AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP 135 (183)
Q Consensus 57 ~~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~ 135 (183)
.++++ ++--|+.++....|+-++++.+.. +..+....+.++++..++ ...+|++|+.+|.|.+||.++...
T Consensus 138 Dm~y~~~scDly~~gsg~evYRlNLEqGrf------L~P~~~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksr- 209 (703)
T KOG2321|consen 138 DMKYHKPSCDLYLVGSGSEVYRLNLEQGRF------LNPFETDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSR- 209 (703)
T ss_pred cccccCCCccEEEeecCcceEEEEcccccc------ccccccccccceeeeecC-ccceEEecccCceEEEecchhhhh-
Confidence 45555 333467777777888889988776 445555668899999999 667999999999999999998654
Q ss_pred eEEec------cCCC-----cEEEEEecC-CcEEEEecCCCcEEEEEecCCCCCCC
Q psy2113 136 LFDML------GHED-----KVMCVNWSD-YRYIMSGGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 136 ~~~~~------~~~~-----~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~ 179 (183)
+..+. .|.+ .|+++.|++ +-.+++|+.+|.+.|||+++.+..-.
T Consensus 210 v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~ 265 (703)
T KOG2321|consen 210 VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV 265 (703)
T ss_pred heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee
Confidence 33222 2222 499999996 58899999999999999998876543
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.1e-10 Score=88.01 Aligned_cols=123 Identities=15% Similarity=0.249 Sum_probs=89.7
Q ss_pred cCCCeeEEEEc-c-CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcc--eEEEEEecCCCCEEEEEeCCCeEEE
Q psy2113 51 HKEAISAVQWT-A-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW--VQSVRWSPIDPQLFVSASFDNSVKL 126 (183)
Q Consensus 51 h~~~v~~~~~~-~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~p~~~~~l~~~~~dg~i~v 126 (183)
....|+++.-+ . ++.+++|-.||.+++||.+..... ......+.|... |..+.+.+.+-..+++|+.||.|++
T Consensus 1207 s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d---s~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~ 1283 (1387)
T KOG1517|consen 1207 SSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD---SLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQL 1283 (1387)
T ss_pred CCccceeecccccCCceEEEeecCCceEEeecccCCcc---ccceeecccCCcccceeEEeecCCCcceeeeccCCeEEE
Confidence 34456777655 3 356899999999999998865432 234556778777 9999999844456999999999999
Q ss_pred EeCCCC-CcceEEeccCC---CcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 127 WDLRSP-KVPLFDMLGHE---DKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 127 wd~~~~-~~~~~~~~~~~---~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
||+|.. +.-......|. +..+++..++. ..+++|+. +.|.||++...+..
T Consensus 1284 ~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1284 LDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred EecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc
Confidence 999984 22122333333 35899999976 78888888 99999998765543
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.9e-10 Score=88.31 Aligned_cols=137 Identities=14% Similarity=0.166 Sum_probs=100.6
Q ss_pred cCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCc-cCceeEEEeecCCcceEEEEEecCCCCEEE
Q psy2113 40 LQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMK-KGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 116 (183)
Q Consensus 40 ~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 116 (183)
.++..+..+..|...+..++.++. ..|++||.||+|++|+.+.-... .......++......+.++.+.+ .++.++
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~-~~~~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG-NGDQFA 1114 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc-CCCeEE
Confidence 456778888889999999999844 45999999999999998754322 22222334444677899999999 888999
Q ss_pred EEeCCCeEEEEeCCCC--Cc----------------------------------------------------ceEEeccC
Q psy2113 117 SASFDNSVKLWDLRSP--KV----------------------------------------------------PLFDMLGH 142 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~--~~----------------------------------------------------~~~~~~~~ 142 (183)
.++.||.|.+.++... +. -.......
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 9999999999988751 11 00000122
Q ss_pred CCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 143 EDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 143 ~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
.+.|++++.+|. ..++.|+..|.+.+||+|-+...
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i 1230 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPI 1230 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCcee
Confidence 457888888876 78999999999999999866543
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.3e-09 Score=74.58 Aligned_cols=122 Identities=12% Similarity=0.155 Sum_probs=89.6
Q ss_pred cCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEee---cCCcceEEEEEecCCCCEEEEEe--CCCeEE
Q psy2113 51 HKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFS---SHKEWVQSVRWSPIDPQLFVSAS--FDNSVK 125 (183)
Q Consensus 51 h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~ 125 (183)
...+|.++.++. .+|+.+-.+ .|+|||+++-+. ++++. .+...+.+++.++ ...+++--+ ..|.|.
T Consensus 86 fpt~IL~VrmNr-~RLvV~Lee-~IyIydI~~Mkl------LhTI~t~~~n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~ 156 (391)
T KOG2110|consen 86 FPTSILAVRMNR-KRLVVCLEE-SIYIYDIKDMKL------LHTIETTPPNPKGLCALSPNN-ANCYLAYPGSTTSGDVV 156 (391)
T ss_pred cCCceEEEEEcc-ceEEEEEcc-cEEEEeccccee------ehhhhccCCCccceEeeccCC-CCceEEecCCCCCceEE
Confidence 445677777754 345554433 499999988665 33332 3444566666666 455665433 368999
Q ss_pred EEeCCCCCcceEEeccCCCcEEEEEecC-CcEEEEecCCCc-EEEEEecCCCCCCCccC
Q psy2113 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYIMSGGQDNS-VRVFKTKHQPKSGQKSK 182 (183)
Q Consensus 126 vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~ 182 (183)
+||..+-+. +..+..|.+++-+++|++ +.+||+++..|+ ||++.+.++++..|..|
T Consensus 157 l~d~~nl~~-v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR 214 (391)
T KOG2110|consen 157 LFDTINLQP-VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR 214 (391)
T ss_pred EEEccccee-eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC
Confidence 999998876 888999999999999995 599999999998 79999999888776554
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=9e-09 Score=71.17 Aligned_cols=118 Identities=15% Similarity=0.228 Sum_probs=84.6
Q ss_pred eEEEeccCCCeeEEEEccCCe-EEEEeCCCe-EEEEEcCCCCCccCceeEEEeec--CCcceEEEEEecCCCCEEEEEeC
Q psy2113 45 LITLKGHKEAISAVQWTAVDE-IITSSWDHT-LKIWDAELGGMKKGAIVKSTFSS--HKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
-..+.+|...|.|++.+-+|. ++++|..|+ |||||.+++.. +..++. ....|.+++|+| +..+++..+.
T Consensus 174 p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~------l~E~RRG~d~A~iy~iaFSp-~~s~LavsSd 246 (346)
T KOG2111|consen 174 PSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL------LQELRRGVDRADIYCIAFSP-NSSWLAVSSD 246 (346)
T ss_pred ceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE------eeeeecCCchheEEEEEeCC-CccEEEEEcC
Confidence 367789999999999996665 888988876 78999998875 334432 345799999999 8899999999
Q ss_pred CCeEEEEeCCCCCcceE-----------------------EeccCCCcEEEEEecCC-cEEEEecCCCcEEEE
Q psy2113 121 DNSVKLWDLRSPKVPLF-----------------------DMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVF 169 (183)
Q Consensus 121 dg~i~vwd~~~~~~~~~-----------------------~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iw 169 (183)
.|+++++.++....... .+.-..++..-++|..+ +.++..+.||.-+=+
T Consensus 247 KgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~ 319 (346)
T KOG2111|consen 247 KGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKF 319 (346)
T ss_pred CCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEE
Confidence 99999998876331011 11112334455667644 677777778875433
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.5e-09 Score=73.96 Aligned_cols=155 Identities=17% Similarity=0.293 Sum_probs=97.7
Q ss_pred eEEEEEeecC-cEEEEEE---eccCCCCcccccc-------cCccceEEEeccCCCeeEEEEccCCe-EEEEe-CCCeEE
Q psy2113 10 TLGVIFMTVG-ALLTLTN---IEVTSLPSFFQLI-------LQKTPLITLKGHKEAISAVQWTAVDE-IITSS-WDHTLK 76 (183)
Q Consensus 10 ~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~v~ 76 (183)
+.+++|-|-+ ..++++. +-+|......... .....+..-.+| .+|+++.|++++. +++++ .|..|+
T Consensus 143 vtclawRPlsaselavgCr~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~ 221 (445)
T KOG2139|consen 143 VTCLAWRPLSASELAVGCRAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIM 221 (445)
T ss_pred eeEEEeccCCcceeeeeecceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEE
Confidence 4567787854 3444443 6666654321111 111223333445 6899999998876 77766 468899
Q ss_pred EEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--
Q psy2113 77 IWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-- 154 (183)
Q Consensus 77 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-- 154 (183)
|||..++...+ +. .-..+.++-+.|+| ++.++.++..|+..++|+...... ........+.|..-.|+|.
T Consensus 222 iWdpdtg~~~p----L~--~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt-~erw~lgsgrvqtacWspcGs 293 (445)
T KOG2139|consen 222 IWDPDTGQKIP----LI--PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWT-KERWILGSGRVQTACWSPCGS 293 (445)
T ss_pred EEcCCCCCccc----cc--ccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccce-ecceeccCCceeeeeecCCCC
Confidence 99999877532 11 23456688999999 889999999999999996654432 2233333458999999976
Q ss_pred cEEEEecCCCcEEEEEecCCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~~ 175 (183)
.+|++.+. .=++|.+.-..
T Consensus 294 fLLf~~sg--sp~lysl~f~~ 312 (445)
T KOG2139|consen 294 FLLFACSG--SPRLYSLTFDG 312 (445)
T ss_pred EEEEEEcC--CceEEEEeecC
Confidence 34455543 44455544433
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-09 Score=76.51 Aligned_cols=167 Identities=21% Similarity=0.373 Sum_probs=119.4
Q ss_pred ceeEEEEEeecCcEEEEEEeccCCCCcc--cccccCccceEEEeccCCCeeEEEEc-cCCeEEEEeCCCeEEEEEcCCCC
Q psy2113 8 ILTLGVIFMTVGALLTLTNIEVTSLPSF--FQLILQKTPLITLKGHKEAISAVQWT-AVDEIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~v~vwd~~~~~ 84 (183)
-.|.++.|++..+.+.++-.. .....+ ..+.++.........|...+..+.|+ +...+++.+.|..+.---.+.++
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~n-gtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~ 147 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDN-GTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGN 147 (404)
T ss_pred CCceEeeeeccceEEEEEEec-ceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCC
Confidence 457788888888887776422 111111 11223344455566788888888888 55567777777665422222211
Q ss_pred Cc-----------------------------------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 85 MK-----------------------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 85 ~~-----------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
.. ....+...+.+|.+.+.+++|.| ....+.+|..|..+.+||+
T Consensus 148 ~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdi 226 (404)
T KOG1409|consen 148 RLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDI 226 (404)
T ss_pred cccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEec
Confidence 11 22334556788999999999999 8889999999999999999
Q ss_pred CCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 130 RSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 130 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
--.+.....+.+|...|..+...+. ..+++++.||.|-+||.+....
T Consensus 227 gg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~ 274 (404)
T KOG1409|consen 227 GGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRV 274 (404)
T ss_pred cCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceee
Confidence 8776657788999999999988865 8999999999999999876644
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.3e-09 Score=70.86 Aligned_cols=104 Identities=18% Similarity=0.453 Sum_probs=73.2
Q ss_pred eeEEEEEeecCcEEEEEE------eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeC---CCeEEEE
Q psy2113 9 LTLGVIFMTVGALLTLTN------IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSW---DHTLKIW 78 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~---d~~v~vw 78 (183)
.+.+++|+|+|..+++.. +.+|++ +.+++..+ +...++.+.|+|+|+ ++.++. .|.+.+|
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~--------~~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~w 130 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDV--------KGKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFW 130 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcC--------cccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEE
Confidence 478999999998876542 233322 24555555 456788999999987 555543 4779999
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC------CCeEEEEeCCC
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF------DNSVKLWDLRS 131 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~vwd~~~ 131 (183)
|.+..+. +... +...++.++|+| ++++++++.. |..+++|+...
T Consensus 131 d~~~~~~------i~~~--~~~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 131 DVRKKKK------ISTF--EHSDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred ECCCCEE------eecc--ccCcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEecC
Confidence 9985443 2222 233578999999 8899888864 77889999853
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-08 Score=72.09 Aligned_cols=158 Identities=11% Similarity=0.058 Sum_probs=94.2
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCc--cceEEEeccCCCeeEEEEccCCe-EEEEe-CCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQK--TPLITLKGHKEAISAVQWTAVDE-IITSS-WDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~v~vwd~~~~~ 84 (183)
....++++|+++.+.++......+..+..+ ..+ ..+.... ..+....+.++|+++ +++++ .++.+.+|++....
T Consensus 36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~-~~g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g 113 (330)
T PRK11028 36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIA-DDGALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDG 113 (330)
T ss_pred CCccEEECCCCCEEEEEECCCCcEEEEEEC-CCCceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence 345678999999887765322222111111 111 1222222 233456899998876 44444 58999999996432
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEE-EEEeCCCeEEEEeCCCCCcce------EEeccCCCcEEEEEecCC-cE
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF-VSASFDNSVKLWDLRSPKVPL------FDMLGHEDKVMCVNWSDY-RY 156 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~vwd~~~~~~~~------~~~~~~~~~v~~~~~~~~-~~ 156 (183)
.... ....+. +......++++| +++++ ++...++.|.+||+.+..... ... ........+.|+|+ ++
T Consensus 114 ~~~~--~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~-~~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 114 IPVA--PIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT-VEGAGPRHMVFHPNQQY 188 (330)
T ss_pred CCCC--ceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec-CCCCCCceEEECCCCCE
Confidence 2111 111222 234467888999 66666 555567999999998633211 111 12334678999976 77
Q ss_pred EEEecC-CCcEEEEEecC
Q psy2113 157 IMSGGQ-DNSVRVFKTKH 173 (183)
Q Consensus 157 l~~~~~-dg~i~iwd~~~ 173 (183)
++++.. ++.|.+||+..
T Consensus 189 lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKD 206 (330)
T ss_pred EEEEecCCCEEEEEEEeC
Confidence 777665 89999999974
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.6e-09 Score=84.74 Aligned_cols=100 Identities=23% Similarity=0.316 Sum_probs=87.5
Q ss_pred EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCc
Q psy2113 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK 145 (183)
Q Consensus 66 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 145 (183)
+++|+.-+.+.+|+....+. ...+.+|.+.+..+.++- +++++++.+.|..+++|++.+.+.......+|+..
T Consensus 148 i~~gsv~~~iivW~~~~dn~------p~~l~GHeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR 220 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNK------PIRLKGHEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR 220 (967)
T ss_pred EEeccccccEEEEeccccCC------cceecccCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccce
Confidence 78889999999999874332 225789999999999999 89999999999999999999988755577899999
Q ss_pred EEEEEecCCcEEEEecCCCcEEEEEecC
Q psy2113 146 VMCVNWSDYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 146 v~~~~~~~~~~l~~~~~dg~i~iwd~~~ 173 (183)
|+.+.|.|. .+++++.|.+.++|+...
T Consensus 221 vw~~~~~~n-~i~t~gedctcrvW~~~~ 247 (967)
T KOG0974|consen 221 VWACCFLPN-RIITVGEDCTCRVWGVNG 247 (967)
T ss_pred eEEEEeccc-eeEEeccceEEEEEeccc
Confidence 999999997 999999999999996543
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-10 Score=86.43 Aligned_cols=116 Identities=19% Similarity=0.338 Sum_probs=90.0
Q ss_pred CeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC
Q psy2113 54 AISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK 133 (183)
Q Consensus 54 ~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~ 133 (183)
.|+.++|-|+|.-+.-..+..+.+||...+.. ...+++|+..|.|++|+. +|..+++|+.|..|.+|...-.-
T Consensus 14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~l------lqtLKgHKDtVycVAys~-dGkrFASG~aDK~VI~W~~klEG 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTL------LQPLKGHKDTVYCVAYAK-DGKRFASGSADKSVIIWTSKLEG 86 (1081)
T ss_pred chheeEECCCCceEEEecCCEEEEEeCCCccc------ccccccccceEEEEEEcc-CCceeccCCCceeEEEecccccc
Confidence 78999999998733333456899999998876 678999999999999999 89999999999999999875432
Q ss_pred cceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCCCCc
Q psy2113 134 VPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKSGQK 180 (183)
Q Consensus 134 ~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~ 180 (183)
...-.|.+.|.|+.|+|- +.+++++- ...-+|...++....++
T Consensus 87 ---~LkYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~k 130 (1081)
T KOG1538|consen 87 ---ILKYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKHK 130 (1081)
T ss_pred ---eeeeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhhh
Confidence 234468999999999986 55665544 35667776655444433
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=4e-08 Score=73.55 Aligned_cols=156 Identities=10% Similarity=0.064 Sum_probs=91.3
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEE-EeCCC--eEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IIT-SSWDH--TLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s-~~~d~--~v~vwd~~~~~ 84 (183)
...+.+|+|+|..++..............+...++ ...+....+.+....|+|+|. |+. .+.++ .|++||+.++.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-~~~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~ 278 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-VRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 278 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-eEEccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence 56788999999988764321111111111222222 222223334455789999987 443 34444 58889987765
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-C--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-N--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
. ..+..+...+....|+| +++.|+..+.+ + .|+++|+.++. ...+...........|+|+ +.++..
T Consensus 279 ~-------~~lt~~~~~~~~~~wSP-DG~~I~f~s~~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~SpDG~~Ia~~ 348 (429)
T PRK03629 279 I-------RQVTDGRSNNTEPTWFP-DSQNLAYTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMV 348 (429)
T ss_pred E-------EEccCCCCCcCceEECC-CCCEEEEEeCCCCCceEEEEECCCCC--eEEeecCCCCccCEEECCCCCEEEEE
Confidence 3 33444455678899999 77777666543 4 45555776654 3333334445567889965 666554
Q ss_pred cC-C--CcEEEEEecCCC
Q psy2113 161 GQ-D--NSVRVFKTKHQP 175 (183)
Q Consensus 161 ~~-d--g~i~iwd~~~~~ 175 (183)
+. + ..|.+||+.++.
T Consensus 349 ~~~~g~~~I~~~dl~~g~ 366 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGG 366 (429)
T ss_pred EccCCCceEEEEECCCCC
Confidence 43 3 358888987664
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.9e-09 Score=78.09 Aligned_cols=121 Identities=17% Similarity=0.265 Sum_probs=98.9
Q ss_pred eccCCCeeEEEEccC-CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEE
Q psy2113 49 KGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 127 (183)
Q Consensus 49 ~~h~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vw 127 (183)
..|.+.|+++.++.+ +.|.+++.|..+-.|+...... .....+.+..+.+++.+| ++..+++++ +.|++|
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~------~~~~~~~~~~~~sl~is~-D~~~l~~as--~~ik~~ 169 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVI------IRIWKEQKPLVSSLCISP-DGKILLTAS--RQIKVL 169 (541)
T ss_pred CCCCCcceeeecccccCceEecCCceeEEEEeccccee------eeeeccCCCccceEEEcC-CCCEEEecc--ceEEEE
Confidence 468899999998844 7799999999999999987665 556777788899999999 788888886 699999
Q ss_pred eCCCCCcceEEeccCCCcEEEEEec-C-----CcEE-EEecCCCcEEEEEecCCCCCCC
Q psy2113 128 DLRSPKVPLFDMLGHEDKVMCVNWS-D-----YRYI-MSGGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 128 d~~~~~~~~~~~~~~~~~v~~~~~~-~-----~~~l-~~~~~dg~i~iwd~~~~~~~~~ 179 (183)
|+++.+. +..+.+|.++|.++.|. . +.++ .+...+..+.+|-++...+..+
T Consensus 170 ~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks 227 (541)
T KOG4547|consen 170 DIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKS 227 (541)
T ss_pred EccCceE-EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccch
Confidence 9999887 89999999999999997 2 3444 4455567789998887555544
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.4e-09 Score=77.81 Aligned_cols=120 Identities=15% Similarity=0.239 Sum_probs=81.0
Q ss_pred eEEEeccCCCeeEEEEccCCe-EEEEeCC---CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEE-e
Q psy2113 45 LITLKGHKEAISAVQWTAVDE-IITSSWD---HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA-S 119 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~-l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~ 119 (183)
...+..|...+....|+|++. ++..+.+ ..|++||+.+++.. .+....+....++|+| +++.|+.+ +
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------~l~~~~g~~~~~~wSP-DG~~La~~~~ 267 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------VVASFRGHNGAPAFSP-DGSRLAFASS 267 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE-------EEecCCCccCceeECC-CCCEEEEEEe
Confidence 345667888899999999986 6655433 47999999875431 2222233345789999 77777665 4
Q ss_pred CCCeEE--EEeCCCCCcceEEeccCCCcEEEEEecCC-cEEE-EecCCCcEEEEEecCC
Q psy2113 120 FDNSVK--LWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIM-SGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 120 ~dg~i~--vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~-~~~~dg~i~iwd~~~~ 174 (183)
.+|.+. +||+.++. ...+..+...+....|+|+ ..|+ ++..+|...||++...
T Consensus 268 ~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~ 324 (429)
T PRK01742 268 KDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSAS 324 (429)
T ss_pred cCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECC
Confidence 677655 45666554 4555667777889999976 5554 5556788899987643
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.7e-08 Score=73.37 Aligned_cols=155 Identities=14% Similarity=0.067 Sum_probs=95.3
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-E-EEEeCCCe--EEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-I-ITSSWDHT--LKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~--v~vwd~~~~~ 84 (183)
...+..|+|+|..++......-....+..+...++ ...+..+.+.+....|+|+|. | ++.+.++. |++||+.++.
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 281 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT 281 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence 45678899999987765421111111111222222 234555667778899999886 4 35555554 7777887655
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
...+..+........|+| +++.++..+. +| .|+++|+..+.. ..+..+...+....|+|+ +.|+..
T Consensus 282 -------~~~Lt~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~--~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 282 -------TTRLTDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNP--RRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred -------eEEccCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCe--EEeecCCCcccCeEECCCCCEEEEE
Confidence 334555666667789999 7777766653 33 688889876653 334334455677889965 666655
Q ss_pred cCC---CcEEEEEecCC
Q psy2113 161 GQD---NSVRVFKTKHQ 174 (183)
Q Consensus 161 ~~d---g~i~iwd~~~~ 174 (183)
..+ ..|.+||+..+
T Consensus 352 ~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGS 368 (435)
T ss_pred EcCCCceEEEEEECCCC
Confidence 433 35788887543
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.2e-09 Score=76.38 Aligned_cols=170 Identities=22% Similarity=0.324 Sum_probs=114.4
Q ss_pred cceeceeEEEEEeecCcEEEEEE---eccCCCCccccc--ccCccceEEEeccCCCeeEEEEccC--CeEEEEeCCCeEE
Q psy2113 4 NKFGILTLGVIFMTVGALLTLTN---IEVTSLPSFFQL--ILQKTPLITLKGHKEAISAVQWTAV--DEIITSSWDHTLK 76 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~--~~l~s~~~d~~v~ 76 (183)
|.......++.++.|+..+..++ +.+|.+....+. ...-+| ..+..-..-|++..|+|. +.|+-.+..|+|+
T Consensus 161 NaHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 161 NAHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred ccceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccc-cCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 34455678889999998877766 778887654321 111111 112223456899999976 4588889999999
Q ss_pred EEEcCCCCCccC----------ceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCC--
Q psy2113 77 IWDAELGGMKKG----------AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHED-- 144 (183)
Q Consensus 77 vwd~~~~~~~~~----------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-- 144 (183)
+-|++...+... ......+..--..|..+.|++ +|+++++-.. -+|++||+.....++...+-|..
T Consensus 240 LcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~-sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr 317 (433)
T KOG1354|consen 240 LCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSH-SGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLR 317 (433)
T ss_pred EeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEcc-CCcEEEEecc-ceeEEEeccccCCcceEEeehHhHH
Confidence 999985332110 001111222235688999999 8999997643 68999999877666777776632
Q ss_pred ----------cE---EEEEec-CCcEEEEecCCCcEEEEEecCCCC
Q psy2113 145 ----------KV---MCVNWS-DYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 145 ----------~v---~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.| ..++|+ ++.++++|+....++++++..+.+
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 22 456787 458999999999999999665544
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=5e-10 Score=75.54 Aligned_cols=73 Identities=26% Similarity=0.465 Sum_probs=64.0
Q ss_pred ccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 50 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 50 ~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
--+..|..+..-|+++ +++++.|+.+|||..++.+. +..+.-|+..|.+++|+| +..++++++.|+.|-+|+
T Consensus 249 lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p------LAVLkyHsagvn~vAfsp-d~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 249 LKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP------LAVLKYHSAGVNAVAFSP-DCELMAAASKDARISLWK 321 (323)
T ss_pred ecCCCccceEEccCCcEEeecccCCcEEEEEeccCCc------hhhhhhhhcceeEEEeCC-CCchhhhccCCceEEeee
Confidence 3445678888889888 78999999999999998776 667788999999999999 778999999999999998
Q ss_pred C
Q psy2113 129 L 129 (183)
Q Consensus 129 ~ 129 (183)
+
T Consensus 322 L 322 (323)
T KOG0322|consen 322 L 322 (323)
T ss_pred c
Confidence 6
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.9e-09 Score=52.64 Aligned_cols=37 Identities=35% Similarity=0.778 Sum_probs=34.4
Q ss_pred eEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 91 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
+...+.+|...|.+++|+| ++.++++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 3668899999999999999 799999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.9e-08 Score=73.75 Aligned_cols=156 Identities=12% Similarity=0.050 Sum_probs=92.6
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EE-EEeCCC--eEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-II-TSSWDH--TLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~--~v~vwd~~~~~ 84 (183)
...+.+|+|+|..++...........+..+...++ ...+....+......|+|++. ++ +.+.++ .|++||+.++.
T Consensus 205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~ 283 (433)
T PRK04922 205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-RELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ 283 (433)
T ss_pred ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-EEEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence 45677899999887765422111111111222222 223334444556789999886 43 445555 69999988765
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
. ..+..+.......+|+| +++.++..+. +| .|+++|+.+++. ..+..+.......+|+|+ +.++..
T Consensus 284 ~-------~~lt~~~~~~~~~~~sp-DG~~l~f~sd~~g~~~iy~~dl~~g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~ 353 (433)
T PRK04922 284 L-------TRLTNHFGIDTEPTWAP-DGKSIYFTSDRGGRPQIYRVAASGGSA--ERLTFQGNYNARASVSPDGKKIAMV 353 (433)
T ss_pred e-------EECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCe--EEeecCCCCccCEEECCCCCEEEEE
Confidence 2 34445555567789999 7777766653 44 477777776653 223223334456899965 666654
Q ss_pred cCC-C--cEEEEEecCCC
Q psy2113 161 GQD-N--SVRVFKTKHQP 175 (183)
Q Consensus 161 ~~d-g--~i~iwd~~~~~ 175 (183)
+.+ + .|.+||+.+++
T Consensus 354 ~~~~~~~~I~v~d~~~g~ 371 (433)
T PRK04922 354 HGSGGQYRIAVMDLSTGS 371 (433)
T ss_pred ECCCCceeEEEEECCCCC
Confidence 433 2 58999987654
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.9e-08 Score=69.32 Aligned_cols=160 Identities=11% Similarity=0.161 Sum_probs=94.4
Q ss_pred eEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-E-EEEeCCCeEEEEEcCC
Q psy2113 10 TLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-I-ITSSWDHTLKIWDAEL 82 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~~ 82 (183)
...++|+|+++.+.+.+ +.+|.+.. +....+.+..+. +.....+++++|+++ + ++...++.|.+||+.+
T Consensus 82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~---~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~ 157 (330)
T PRK11028 82 PTHISTDHQGRFLFSASYNANCVSVSPLDK---DGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSD 157 (330)
T ss_pred ceEEEECCCCCEEEEEEcCCCeEEEEEECC---CCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECC
Confidence 45788999999888765 23332210 000112222232 234467788998876 4 4566779999999976
Q ss_pred CCCccC-ceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CCeEEEEeCCCC--Cc-ceEEeccC------CCcEEEEEe
Q psy2113 83 GGMKKG-AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DNSVKLWDLRSP--KV-PLFDMLGH------EDKVMCVNW 151 (183)
Q Consensus 83 ~~~~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~vwd~~~~--~~-~~~~~~~~------~~~v~~~~~ 151 (183)
...... ........ .......+.|+| ++++++++.. ++.|.+||+... .. ....+..+ ......+.+
T Consensus 158 ~g~l~~~~~~~~~~~-~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~ 235 (330)
T PRK11028 158 DGHLVAQEPAEVTTV-EGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHI 235 (330)
T ss_pred CCcccccCCCceecC-CCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEE
Confidence 332110 00001111 123457889999 7777777665 899999999742 21 12222211 112346888
Q ss_pred cCC-cEEEEecC-CCcEEEEEecCCC
Q psy2113 152 SDY-RYIMSGGQ-DNSVRVFKTKHQP 175 (183)
Q Consensus 152 ~~~-~~l~~~~~-dg~i~iwd~~~~~ 175 (183)
+|+ ++++++.. ++.|.+|++....
T Consensus 236 ~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 236 TPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred CCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 876 77777754 7899999996543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-08 Score=74.87 Aligned_cols=152 Identities=16% Similarity=0.145 Sum_probs=88.9
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCcc--ceEEEeccCCCeeEEEEccCCe-EEEE-eCCCeEEEE--EcCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKT--PLITLKGHKEAISAVQWTAVDE-IITS-SWDHTLKIW--DAEL 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~-l~s~-~~d~~v~vw--d~~~ 82 (183)
...+..|+|+|..++.....--....+..+...++ .+..+.+ ....++|+|++. |+.+ +.++.+.|| |+.+
T Consensus 205 ~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g---~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~ 281 (429)
T PRK01742 205 PLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG---HNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG 281 (429)
T ss_pred ccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC---ccCceeECCCCCEEEEEEecCCcEEEEEEECCC
Confidence 45778999999988765421100001111222222 2333333 344689999986 5554 467766655 5544
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEE-eCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA-SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
+. ...+..+...+....|+| +++.++.. ..+|...+|++.........+ .+.. ....|+|+ +.++..
T Consensus 282 ~~-------~~~lt~~~~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ia~~ 350 (429)
T PRK01742 282 GT-------PSQLTSGAGNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKTLVMI 350 (429)
T ss_pred CC-------eEeeccCCCCcCCEEECC-CCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCEEEEE
Confidence 43 334556677788999999 67765544 457778888765432212223 3333 45678865 777776
Q ss_pred cCCCcEEEEEecCCC
Q psy2113 161 GQDNSVRVFKTKHQP 175 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~ 175 (183)
+.++ +.+||+.+++
T Consensus 351 ~~~~-i~~~Dl~~g~ 364 (429)
T PRK01742 351 NGDN-VVKQDLTSGS 364 (429)
T ss_pred cCCC-EEEEECCCCC
Confidence 6654 5568987764
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.9e-10 Score=76.99 Aligned_cols=123 Identities=18% Similarity=0.239 Sum_probs=91.6
Q ss_pred cCCCeeEEEEcc-CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 51 HKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 51 h~~~v~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
..+.|.++.|.. ++.+..|..+|.|...|++......... . ...-|+..|+++..-..++++|++.+.+|+|++||.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~-a-~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC-A-QRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc-e-EEEEcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 455788888885 5567889999999999999764332222 2 223488999998765546778888889999999999
Q ss_pred CCCCc--ceEEeccCCCcEEEEEec--CC-cEEEEecCCCcEEEEEecCCC
Q psy2113 130 RSPKV--PLFDMLGHEDKVMCVNWS--DY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 130 ~~~~~--~~~~~~~~~~~v~~~~~~--~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+.-++ -+....+|-..-.-+-++ +. ..++++++|...|||.++.+.
T Consensus 329 R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCc
Confidence 97654 256777886555444444 33 789999999999999998654
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.5e-09 Score=53.00 Aligned_cols=37 Identities=27% Similarity=0.691 Sum_probs=33.6
Q ss_pred cceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 43 TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
+++..+++|.++|++++|+|++. +++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788999999999999998854 89999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.5e-10 Score=74.88 Aligned_cols=73 Identities=19% Similarity=0.322 Sum_probs=66.6
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecC
Q psy2113 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 101 ~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~ 173 (183)
.|++++-+|...+++++|+.||.+-+||.++...+...+..|+.+++.+-|+|. ..|++++.||.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 399999999777788999999999999999998888999999999999999964 8999999999999999774
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.8e-09 Score=72.82 Aligned_cols=74 Identities=24% Similarity=0.381 Sum_probs=62.6
Q ss_pred CCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 53 EAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 53 ~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
..|.+++-+|. ..+++|+.||.+.+||.++... +...+..|+.+++.+-|+|.++..|++++.||.+..||..
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~-----p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas 254 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM-----PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAS 254 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccc-----hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCC
Confidence 34888888864 3477889999999999987643 2456788999999999999999999999999999999987
Q ss_pred C
Q psy2113 131 S 131 (183)
Q Consensus 131 ~ 131 (183)
+
T Consensus 255 ~ 255 (319)
T KOG4714|consen 255 T 255 (319)
T ss_pred C
Confidence 4
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-07 Score=70.45 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=94.1
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EE-EEeCCC--eEEEEEcCCCCC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-II-TSSWDH--TLKIWDAELGGM 85 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~--~v~vwd~~~~~~ 85 (183)
..+..|+|+|..++..............+...++ ...+..+.+.+.++.|+|++. |+ +.+.++ .|++||+.++..
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~ 270 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-REKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL 270 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCE
Confidence 4567799999988765422111111111222222 233444556677889999876 54 444444 588888876542
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
..+..+........|+| +++.++..+. ++ .|+++|+.+++ ...+..+...+....|+|+ .+++..+
T Consensus 271 -------~~l~~~~~~~~~~~~s~-dg~~l~~~s~~~g~~~iy~~d~~~~~--~~~l~~~~~~~~~~~~spdg~~i~~~~ 340 (417)
T TIGR02800 271 -------TRLTNGPGIDTEPSWSP-DGKSIAFTSDRGGSPQIYMMDADGGE--VRRLTFRGGYNASPSWSPDGDLIAFVH 340 (417)
T ss_pred -------EECCCCCCCCCCEEECC-CCCEEEEEECCCCCceEEEEECCCCC--EEEeecCCCCccCeEECCCCCEEEEEE
Confidence 23444444455678999 7777665543 33 68888887765 3344445566778899965 7777766
Q ss_pred CCC---cEEEEEecCC
Q psy2113 162 QDN---SVRVFKTKHQ 174 (183)
Q Consensus 162 ~dg---~i~iwd~~~~ 174 (183)
.++ .|.+||+.++
T Consensus 341 ~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 341 REGGGFNIAVMDLDGG 356 (417)
T ss_pred ccCCceEEEEEeCCCC
Confidence 665 7888888764
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.7e-08 Score=72.56 Aligned_cols=122 Identities=16% Similarity=0.129 Sum_probs=84.5
Q ss_pred cceEEEeccCCCeeEEEEccCCe-EEEEe---CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEE-EE
Q psy2113 43 TPLITLKGHKEAISAVQWTAVDE-IITSS---WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF-VS 117 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~ 117 (183)
.....+..|...+.+..|+|++. |+..+ .+..|++||+.++.. ..+..+.+.+...+|+| +++.+ ++
T Consensus 192 ~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~-------~~l~~~~g~~~~~~~SP-DG~~la~~ 263 (435)
T PRK05137 192 ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR-------ELVGNFPGMTFAPRFSP-DGRKVVMS 263 (435)
T ss_pred CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE-------EEeecCCCcccCcEECC-CCCEEEEE
Confidence 34455667888999999999886 55544 346899999987653 34555666778899999 66655 45
Q ss_pred EeCCC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec-CCC--cEEEEEecCC
Q psy2113 118 ASFDN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG-QDN--SVRVFKTKHQ 174 (183)
Q Consensus 118 ~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~-~dg--~i~iwd~~~~ 174 (183)
.+.++ .|++||+.++. ...+..+........|+|+ ..++..+ .+| .|.++|+..+
T Consensus 264 ~~~~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 264 LSQGGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred EecCCCceEEEEECCCCc--eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 55555 47888988765 3455556666677899965 6665544 344 5777887654
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.5e-08 Score=69.06 Aligned_cols=119 Identities=16% Similarity=0.337 Sum_probs=83.1
Q ss_pred cCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCCCc-c-------CceeEEEeecCCcceEEEEEecCCCCEEEEEeC
Q psy2113 51 HKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMK-K-------GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 51 h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~~~-~-------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
....|.+++|-|.+. |+.|.. +-|.+|........ . ....+....+| .+|++++|++ ++..+++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~-dgt~l~tAS~ 215 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNE-DGTILVTASF 215 (445)
T ss_pred hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcC-CCCEEeeccc
Confidence 345799999997643 666554 45678987542111 0 01112223344 6899999999 7878888775
Q ss_pred -CCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecC
Q psy2113 121 -DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 121 -dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 173 (183)
|..|.+||+.++.+ +-......+.+.-+.|+|+ .+|+++.-|+..++|+...
T Consensus 216 gsssi~iWdpdtg~~-~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q 269 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQK-IPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQ 269 (445)
T ss_pred CcceEEEEcCCCCCc-ccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcc
Confidence 66899999999875 3233345567888999976 8999999999999996544
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-07 Score=71.29 Aligned_cols=156 Identities=11% Similarity=0.066 Sum_probs=89.7
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EE-EEeCCCeEEEEEcC--CCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-II-TSSWDHTLKIWDAE--LGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~v~vwd~~--~~~ 84 (183)
...+.+|+|+|..++.....--.......+...++. ..+....+.+....|+|++. ++ +.+.++...||.+. .+.
T Consensus 197 ~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~ 275 (427)
T PRK02889 197 PIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-RVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG 275 (427)
T ss_pred CcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 456788999999887654221111111122223322 23333445667899999876 54 56777776666653 332
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CCeEEEEeC--CCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DNSVKLWDL--RSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~vwd~--~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
...+..+........|+| +++.++..+. +|...+|.+ .++.. ..+...........|+|+ +.++..
T Consensus 276 -------~~~lt~~~~~~~~~~wSp-DG~~l~f~s~~~g~~~Iy~~~~~~g~~--~~lt~~g~~~~~~~~SpDG~~Ia~~ 345 (427)
T PRK02889 276 -------LRRLTQSSGIDTEPFFSP-DGRSIYFTSDRGGAPQIYRMPASGGAA--QRVTFTGSYNTSPRISPDGKLLAYI 345 (427)
T ss_pred -------cEECCCCCCCCcCeEEcC-CCCEEEEEecCCCCcEEEEEECCCCce--EEEecCCCCcCceEECCCCCEEEEE
Confidence 234444555567788999 7776665553 455555544 44432 222222233446789965 777665
Q ss_pred cCCC---cEEEEEecCCC
Q psy2113 161 GQDN---SVRVFKTKHQP 175 (183)
Q Consensus 161 ~~dg---~i~iwd~~~~~ 175 (183)
+.++ .|.+||+.+++
T Consensus 346 s~~~g~~~I~v~d~~~g~ 363 (427)
T PRK02889 346 SRVGGAFKLYVQDLATGQ 363 (427)
T ss_pred EccCCcEEEEEEECCCCC
Confidence 5443 59999987654
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.8e-09 Score=81.26 Aligned_cols=127 Identities=26% Similarity=0.480 Sum_probs=100.6
Q ss_pred eEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 45 LITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
...+.+|...|+.+-|+|+.. +++++.|..+..||+++.... .-....-......++|+-.++..++ .+...
T Consensus 107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p-----~ys~~~w~s~asqVkwnyk~p~vla-sshg~ 180 (1081)
T KOG0309|consen 107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRP-----FYSTSSWRSAASQVKWNYKDPNVLA-SSHGN 180 (1081)
T ss_pred EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcc-----eeeeecccccCceeeecccCcchhh-hccCC
Confidence 345678999999999998755 899999999999999876541 2233334455688999885665554 44567
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEecC--CcEEEEecCCCcEEEEEecCCCCC
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD--YRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
.|++||.+.+..+...+++|-..|+.++|.. ...+.+.+.||+|++||.....+.
T Consensus 181 ~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 181 DIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred ceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc
Confidence 8999999999888999999999999999983 378899999999999998765443
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.4e-09 Score=78.11 Aligned_cols=88 Identities=25% Similarity=0.433 Sum_probs=68.4
Q ss_pred cceEEEeccCCCeeEEEEc-cCCeEEEEeCCCeEEEEEcCCCC-CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC
Q psy2113 43 TPLITLKGHKEAISAVQWT-AVDEIITSSWDHTLKIWDAELGG-MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~-~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
-.++.+.+|...|..+.-. +.+.+++++.|++|++|.++... ...+.....+++.|+.+|+.+.|-. +-+.++++
T Consensus 726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~-~lr~i~Sc-- 802 (1034)
T KOG4190|consen 726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLA-DLRSIASC-- 802 (1034)
T ss_pred eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeee-ccceeeec--
Confidence 3467888999999988765 45669999999999999997632 2334455667889999999999987 66667644
Q ss_pred CCeEEEEeCCCCC
Q psy2113 121 DNSVKLWDLRSPK 133 (183)
Q Consensus 121 dg~i~vwd~~~~~ 133 (183)
||-|++||.--++
T Consensus 803 D~giHlWDPFigr 815 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGR 815 (1034)
T ss_pred cCcceeecccccc
Confidence 8999999885443
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=74.08 Aligned_cols=168 Identities=15% Similarity=0.236 Sum_probs=113.1
Q ss_pred ceeEEEEEeecCc-EEEEEE----eccCCCCcccccccCccceEEEec------cCCCeeEEEEc-cCCeEEEEeCCCeE
Q psy2113 8 ILTLGVIFMTVGA-LLTLTN----IEVTSLPSFFQLILQKTPLITLKG------HKEAISAVQWT-AVDEIITSSWDHTL 75 (183)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~-~~~~l~s~~~d~~v 75 (183)
+-..+++..|... .++++. .++|..+......... .+..+.. ..-.|+++.|+ ..+.|++.-.|..|
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~-~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG-VLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc-hhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 4566777777665 455544 4555544433222222 2222222 23368999999 55668888899999
Q ss_pred EEEEcCCCCCc-------cCceeEEEeecCCc--ceEEEEE-ecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCc
Q psy2113 76 KIWDAELGGMK-------KGAIVKSTFSSHKE--WVQSVRW-SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK 145 (183)
Q Consensus 76 ~vwd~~~~~~~-------~~~~~~~~~~~~~~--~v~~~~~-~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 145 (183)
+++...-+... ........+++|.. .|..+-| -| ...++++|+.-|.|.+|+-.+++. +..+.+-..-
T Consensus 361 YLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~ei-i~~MegDr~V 438 (559)
T KOG1334|consen 361 YLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEI-IRFMEGDRHV 438 (559)
T ss_pred EEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccC-ccceEEecCccceEEEEecchhHH-HHHhhcccce
Confidence 99954332210 00111223678854 4777776 46 678999999999999999999876 6666666668
Q ss_pred EEEEEecCC-cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 146 VMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 146 v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
|+|+.-+|- ..|++++.|..|+||-....+...
T Consensus 439 VNCLEpHP~~PvLAsSGid~DVKIWTP~~~er~~ 472 (559)
T KOG1334|consen 439 VNCLEPHPHLPVLASSGIDHDVKIWTPLTAERAT 472 (559)
T ss_pred EeccCCCCCCchhhccCCccceeeecCCcccccc
Confidence 999999987 899999999999999986655443
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.6e-07 Score=75.45 Aligned_cols=164 Identities=13% Similarity=0.087 Sum_probs=111.4
Q ss_pred EEEEee-cCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCCC
Q psy2113 12 GVIFMT-VGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 12 ~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~ 85 (183)
.++.++ .+.+++.+. +++|+...........+...++......+.++..++.+ .++.++.||.|++.++...+.
T Consensus 1053 k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~ 1132 (1431)
T KOG1240|consen 1053 KLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV 1132 (1431)
T ss_pred ceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc
Confidence 344444 336666544 88998877655544555555665567789999998654 599999999999999875211
Q ss_pred c----------------------------cCcee-E--------------------EEeecCCcceEEEEEecCCCCEEE
Q psy2113 86 K----------------------------KGAIV-K--------------------STFSSHKEWVQSVRWSPIDPQLFV 116 (183)
Q Consensus 86 ~----------------------------~~~~~-~--------------------~~~~~~~~~v~~~~~~p~~~~~l~ 116 (183)
. ....+ . .......+.|++++.+| .++.++
T Consensus 1133 ~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~Wlv 1211 (1431)
T KOG1240|consen 1133 SKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLV 1211 (1431)
T ss_pred ccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEE
Confidence 1 00000 0 00112346799999999 888999
Q ss_pred EEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC--C--cEEE-Eec-CCCcEEEEEecCCCC
Q psy2113 117 SASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD--Y--RYIM-SGG-QDNSVRVFKTKHQPK 176 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~--~~l~-~~~-~dg~i~iwd~~~~~~ 176 (183)
.|...|.+.+||+|=.........++..+++.+..++ . ...+ +++ ..+.|.+|++.++..
T Consensus 1212 iGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1212 IGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 9999999999999977653444455667888777763 2 3444 444 578899999998754
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=6.2e-09 Score=85.98 Aligned_cols=141 Identities=16% Similarity=0.329 Sum_probs=103.4
Q ss_pred EEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEE---eCCCeEEEEEcCCCC
Q psy2113 12 GVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITS---SWDHTLKIWDAELGG 84 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~---~~d~~v~vwd~~~~~ 84 (183)
.+.|+..|....+.+ +..|.. .+++....+.|........|.. ..++++ +.++.+.+||.--..
T Consensus 2256 r~~f~~qGnk~~i~d~dg~l~l~q~--------~pk~~~s~qchnk~~~Df~Fi~-s~~~tag~s~d~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQA--------SPKPYTSWQCHNKALSDFRFIG-SLLATAGRSSDNRNVCLWDTLLPP 2326 (2439)
T ss_pred hhhhcccCCceeeeccCCceeeccc--------CCcceeccccCCccccceeeee-hhhhccccCCCCCcccchhcccCc
Confidence 455667776666544 555543 2677778889999999988876 334443 346899999964322
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDN 164 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg 164 (183)
. ..+++ .+|.+.++++++.| ..+++++|+.+|.|++||++..+. .+.++. +....++++|+..|
T Consensus 2327 ~---~s~v~--~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql-~h~~~~---------~~~~~~f~~~ss~g 2390 (2439)
T KOG1064|consen 2327 M---NSLVH--TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQL-RHTFQA---------LDTREYFVTGSSEG 2390 (2439)
T ss_pred c---cceee--eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHH-HHHhhh---------hhhhheeeccCccc
Confidence 1 11222 78999999999999 888999999999999999997654 444433 44458999999999
Q ss_pred cEEEEEecCCCCC
Q psy2113 165 SVRVFKTKHQPKS 177 (183)
Q Consensus 165 ~i~iwd~~~~~~~ 177 (183)
.|+||++......
T Consensus 2391 ~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2391 NIKIWRLSEFGLL 2403 (2439)
T ss_pred ceEEEEccccchh
Confidence 9999999876443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.7e-07 Score=69.24 Aligned_cols=120 Identities=17% Similarity=0.200 Sum_probs=79.7
Q ss_pred eEEEeccCCCeeEEEEccCCe-EEEEeC---CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEE-EEEe
Q psy2113 45 LITLKGHKEAISAVQWTAVDE-IITSSW---DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF-VSAS 119 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~-l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~ 119 (183)
...+..+...+.+..|+|++. |+..+. ...+++||+.++.. ..+....+.....+|+| +++.+ ++.+
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~-------~~l~~~~g~~~~~~~Sp-DG~~l~~~~s 267 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR-------ELVASFRGINGAPSFSP-DGRRLALTLS 267 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE-------EEeccCCCCccCceECC-CCCEEEEEEe
Confidence 345566777899999999876 665553 35799999977653 23334445556789999 66655 4555
Q ss_pred CCC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec-CCCc--EEEEEecCC
Q psy2113 120 FDN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG-QDNS--VRVFKTKHQ 174 (183)
Q Consensus 120 ~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~-~dg~--i~iwd~~~~ 174 (183)
.+| .|++||+.++. ...+..+.......+|+|+ ..++..+ .+|. |.++|+.++
T Consensus 268 ~~g~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 268 RDGNPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred CCCCceEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 555 69999998876 3445555555677899965 6665544 4555 566666544
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=6.7e-08 Score=67.55 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=98.0
Q ss_pred ceeEEEEEeecCcEEEEEEecc-CCCCcccccccCccceEEEeccC-CCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 8 ILTLGVIFMTVGALLTLTNIEV-TSLPSFFQLILQKTPLITLKGHK-EAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
+...++.++|+|..+++++.-+ +.+. .-|. -.+..++|+|.++ |+.|+.|+.+|+-+--+-+
T Consensus 179 ~DltgieWsPdg~~laVwd~~Leykv~---------------aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 179 IDLTGIEWSPDGNWLAVWDNVLEYKVY---------------AYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred ccccCceECCCCcEEEEecchhhheee---------------eeeeccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence 3457889999999999987221 2111 1122 3578899999777 7789999998876532211
Q ss_pred Cc------------------------------------------------------cCceeEE------EeecCCcceEE
Q psy2113 85 MK------------------------------------------------------KGAIVKS------TFSSHKEWVQS 104 (183)
Q Consensus 85 ~~------------------------------------------------------~~~~~~~------~~~~~~~~v~~ 104 (183)
.- ......+ ........+.-
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 00 0000011 11122445778
Q ss_pred EEEecCCCCEEEEEeCC--CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 105 VRWSPIDPQLFVSASFD--NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 105 ~~~~p~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
++|++ +..+++|-... ..+.+||++..+ +........+|....|+|+ ..|+.+...-.+++|.+...
T Consensus 324 lafs~-Ds~y~aTrnd~~PnalW~Wdlq~l~--l~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~ 393 (447)
T KOG4497|consen 324 LAFSC-DSTYAATRNDKYPNALWLWDLQNLK--LHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGP 393 (447)
T ss_pred eeecC-CceEEeeecCCCCceEEEEechhhh--hhhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCc
Confidence 99999 88788876533 478999999876 4444455678999999988 66776666667899987653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=6e-07 Score=67.31 Aligned_cols=119 Identities=13% Similarity=0.161 Sum_probs=76.7
Q ss_pred EEEeccCCCeeEEEEccCCe-EEEEe---CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEE-eC
Q psy2113 46 ITLKGHKEAISAVQWTAVDE-IITSS---WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA-SF 120 (183)
Q Consensus 46 ~~~~~h~~~v~~~~~~~~~~-l~s~~---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~ 120 (183)
..+..+...+....|+|+|. |+..+ .+..+++|++.+++. ..+....+.+....|+| +++.|+.. +.
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~-------~~l~~~~~~~~~~~~SP-DG~~La~~~~~ 263 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-------RQVASFPRHNGAPAFSP-DGSKLAFALSK 263 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-------EEccCCCCCcCCeEECC-CCCEEEEEEcC
Confidence 34455667889999999986 55332 345799999877653 22333344456789999 67666543 44
Q ss_pred CC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecC-CCcEEEE--EecCC
Q psy2113 121 DN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQ-DNSVRVF--KTKHQ 174 (183)
Q Consensus 121 dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~-dg~i~iw--d~~~~ 174 (183)
+| .|++||+.++.. ..+..+...+....|+|+ +.|+..+. ++...+| |+..+
T Consensus 264 ~g~~~I~~~d~~tg~~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g 321 (429)
T PRK03629 264 TGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG 321 (429)
T ss_pred CCCcEEEEEECCCCCE--EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC
Confidence 44 599999988763 444444556788999976 66655544 4555555 55443
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.5e-08 Score=68.82 Aligned_cols=82 Identities=27% Similarity=0.410 Sum_probs=66.7
Q ss_pred EEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeE
Q psy2113 46 ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 124 (183)
Q Consensus 46 ~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 124 (183)
..+-||-.-+..++|+|+++ ++++..|++|++-....... ......||...|..++.-+ ++.|++++.|+++
T Consensus 145 ~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~-----IesfclGH~eFVS~isl~~--~~~LlS~sGD~tl 217 (390)
T KOG3914|consen 145 EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFV-----IESFCLGHKEFVSTISLTD--NYLLLSGSGDKTL 217 (390)
T ss_pred chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccc-----hhhhccccHhheeeeeecc--CceeeecCCCCcE
Confidence 34458999999999998877 88999999999887654332 1223468999999999977 3468999999999
Q ss_pred EEEeCCCCCc
Q psy2113 125 KLWDLRSPKV 134 (183)
Q Consensus 125 ~vwd~~~~~~ 134 (183)
++||+++++.
T Consensus 218 r~Wd~~sgk~ 227 (390)
T KOG3914|consen 218 RLWDITSGKL 227 (390)
T ss_pred EEEecccCCc
Confidence 9999999886
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.2e-07 Score=68.73 Aligned_cols=118 Identities=14% Similarity=0.195 Sum_probs=76.5
Q ss_pred eEEEeccCCCeeEEEEccCCe-EEEEeC---CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEE-EEe
Q psy2113 45 LITLKGHKEAISAVQWTAVDE-IITSSW---DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFV-SAS 119 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~-l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~ 119 (183)
...+..+.+.+.+.+|+|++. |+..+. ...|++||+.+++. ..+....+.....+|+| +++.++ +.+
T Consensus 188 ~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~-------~~l~~~~g~~~~~~~SP-DG~~la~~~~ 259 (427)
T PRK02889 188 AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR-------RVVANFKGSNSAPAWSP-DGRTLAVALS 259 (427)
T ss_pred ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE-------EEeecCCCCccceEECC-CCCEEEEEEc
Confidence 344556778899999999886 555543 24699999987653 23333445667899999 676554 566
Q ss_pred CCCeEEEEe--CCCCCcceEEeccCCCcEEEEEecCC-cEEEEec-CCCcEEEEEec
Q psy2113 120 FDNSVKLWD--LRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG-QDNSVRVFKTK 172 (183)
Q Consensus 120 ~dg~i~vwd--~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~-~dg~i~iwd~~ 172 (183)
.+|...+|. ...+. ...+..+........|+|+ ..|+..+ .+|...+|.+.
T Consensus 260 ~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 260 RDGNSQIYTVNADGSG--LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred cCCCceEEEEECCCCC--cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 777655554 44443 3445555555677889965 5555444 45667777654
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.7e-06 Score=63.91 Aligned_cols=156 Identities=12% Similarity=0.062 Sum_probs=88.6
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EE-EEeCCC--eEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-II-TSSWDH--TLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~--~v~vwd~~~~~ 84 (183)
...+..|+|+|..++....+-.....+..+...++ ...+....+.+....|+|++. ++ +.+.++ .|+++|+.++.
T Consensus 200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~ 278 (430)
T PRK00178 200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-REQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ 278 (430)
T ss_pred ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-EEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence 45677899999988765422111111111222222 223333344556789999876 44 444444 68888988765
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEe-CCC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS-FDN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
. ..+..+........|+| +++.++..+ .+| .|+++|+.+++. ..+...........|+|+ +.++..
T Consensus 279 ~-------~~lt~~~~~~~~~~~sp-Dg~~i~f~s~~~g~~~iy~~d~~~g~~--~~lt~~~~~~~~~~~Spdg~~i~~~ 348 (430)
T PRK00178 279 L-------SRVTNHPAIDTEPFWGK-DGRTLYFTSDRGGKPQIYKVNVNGGRA--ERVTFVGNYNARPRLSADGKTLVMV 348 (430)
T ss_pred e-------EEcccCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCCccceEECCCCCEEEEE
Confidence 3 23444555566788999 666655444 333 678888877653 222212223345678865 666554
Q ss_pred cC-CC--cEEEEEecCCC
Q psy2113 161 GQ-DN--SVRVFKTKHQP 175 (183)
Q Consensus 161 ~~-dg--~i~iwd~~~~~ 175 (183)
+. ++ .|.+||+.+++
T Consensus 349 ~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 349 HRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred EccCCceEEEEEECCCCC
Confidence 43 33 47888887653
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.1e-07 Score=68.10 Aligned_cols=110 Identities=14% Similarity=0.366 Sum_probs=82.3
Q ss_pred CCCeeEEEEccCCe-E--EEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC---CCeEE
Q psy2113 52 KEAISAVQWTAVDE-I--ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF---DNSVK 125 (183)
Q Consensus 52 ~~~v~~~~~~~~~~-l--~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~ 125 (183)
.++|+++.|++++. + +-|-+-.++.|||++..- .+.-..++-+++-|+| .+++++.++. -|.+-
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~---------v~df~egpRN~~~fnp-~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP---------VFDFPEGPRNTAFFNP-HGNIILLAGFGNLPGDME 339 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE---------eEeCCCCCccceEECC-CCCEEEEeecCCCCCceE
Confidence 68999999998875 4 456677899999987532 2333566778999999 8888887765 47899
Q ss_pred EEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecC------CCcEEEEEecCC
Q psy2113 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQ------DNSVRVFKTKHQ 174 (183)
Q Consensus 126 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~------dg~i~iwd~~~~ 174 (183)
|||+.+.++ +..+... .-+-+.|+|+ .+|++++. |+.++||+....
T Consensus 340 vwDv~n~K~-i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 340 VWDVPNRKL-IAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEeccchhh-ccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCc
Confidence 999999655 5555443 3355789976 88887765 788999997643
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-07 Score=67.28 Aligned_cols=134 Identities=14% Similarity=0.194 Sum_probs=99.4
Q ss_pred eeceeEEEEEeec--CcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEE
Q psy2113 6 FGILTLGVIFMTV--GALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW 78 (183)
Q Consensus 6 ~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vw 78 (183)
-.+...++.|-+. ...+++.. +++|+ .....+|+..+.--..+|.++...|++. +++|..-+.+..|
T Consensus 201 VPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YD------t~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~F 274 (412)
T KOG3881|consen 201 VPVWITDIRFLEGSPNYKFATITRYHQVRLYD------TRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKF 274 (412)
T ss_pred eeeeeccceecCCCCCceEEEEecceeEEEec------CcccCcceeEeccccCcceeeeecCCCcEEEEecccchhhee
Confidence 3456678888887 44554433 44443 3456678888888888999999988766 7899999999999
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD 153 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 153 (183)
|.+.+... ...+.+..+.+.++..+| +..++++++-|.+++|+|+.+.+.....+ -...++++.+.+
T Consensus 275 D~r~~kl~-----g~~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvY--vKs~lt~il~~~ 341 (412)
T KOG3881|consen 275 DLRGGKLL-----GCGLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVY--VKSRLTFILLRD 341 (412)
T ss_pred cccCceee-----ccccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhh--hhccccEEEecC
Confidence 99987752 334778899999999999 88899999999999999999855322222 233456666643
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.3e-06 Score=64.56 Aligned_cols=155 Identities=13% Similarity=0.123 Sum_probs=85.3
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EE-EEeCCCe--EEEEEcCCCCC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-II-TSSWDHT--LKIWDAELGGM 85 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~--v~vwd~~~~~~ 85 (183)
..+..|+|+|..++.....-.....+..+...++. ..+....+......|+|++. |+ +.+.++. |+++|+.+++
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~- 297 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-EKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA- 297 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-EEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC-
Confidence 35678999999887654221111111112222222 22322233445789999876 54 4556664 7777877654
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
...+..+.......+|+| +++.++..+. ++ .|+++|+.+++. ..+..........+|+|+ ++++..+
T Consensus 298 ------~~~lt~~~~~~~~p~wSp-DG~~I~f~s~~~g~~~Iy~~dl~~g~~--~~Lt~~g~~~~~~~~SpDG~~l~~~~ 368 (448)
T PRK04792 298 ------LTRITRHRAIDTEPSWHP-DGKSLIFTSERGGKPQIYRVNLASGKV--SRLTFEGEQNLGGSITPDGRSMIMVN 368 (448)
T ss_pred ------eEECccCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCE--EEEecCCCCCcCeeECCCCCEEEEEE
Confidence 233444555567789999 6666655443 33 577778877653 222222223345688865 5655443
Q ss_pred C-CCc--EEEEEecCCC
Q psy2113 162 Q-DNS--VRVFKTKHQP 175 (183)
Q Consensus 162 ~-dg~--i~iwd~~~~~ 175 (183)
. ++. |.++|+.+++
T Consensus 369 ~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 369 RTNGKFNIARQDLETGA 385 (448)
T ss_pred ecCCceEEEEEECCCCC
Confidence 3 444 4556766553
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-06 Score=57.87 Aligned_cols=165 Identities=12% Similarity=0.125 Sum_probs=95.1
Q ss_pred EEEeecCcEEEEEEeccCCCCcccccccCccce-EEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCc----
Q psy2113 13 VIFMTVGALLTLTNIEVTSLPSFFQLILQKTPL-ITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMK---- 86 (183)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~---- 86 (183)
++.+.+|+++++-.-....+..-.++....... +.-+.-...-+.++|+|++. |+.+...|+|++||+...+.-
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p 82 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP 82 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence 456789999988652222222111121111111 11122333567899999887 677888999999998642211
Q ss_pred -------------------------------------------------cCceeEEEee---cCCcceEEEEEecCCCCE
Q psy2113 87 -------------------------------------------------KGAIVKSTFS---SHKEWVQSVRWSPIDPQL 114 (183)
Q Consensus 87 -------------------------------------------------~~~~~~~~~~---~~~~~v~~~~~~p~~~~~ 114 (183)
......+.+. .+...|.++.++| ..++
T Consensus 83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p-~h~L 161 (282)
T PF15492_consen 83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP-KHRL 161 (282)
T ss_pred ccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC-CCCE
Confidence 0000001111 1245789999999 6666
Q ss_pred EEEEeC-CC----------eEEEEeCCCCCcceE---------------------------Ee-ccCCCcEEEEEecCC-
Q psy2113 115 FVSASF-DN----------SVKLWDLRSPKVPLF---------------------------DM-LGHEDKVMCVNWSDY- 154 (183)
Q Consensus 115 l~~~~~-dg----------~i~vwd~~~~~~~~~---------------------------~~-~~~~~~v~~~~~~~~- 154 (183)
|+.|+. .. -+.-|.+-++..... .. ....+.|..|..+|+
T Consensus 162 LlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg 241 (282)
T PF15492_consen 162 LLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDG 241 (282)
T ss_pred EEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCC
Confidence 666543 21 255665543322000 00 112457888899976
Q ss_pred cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
..|++...+|.|.+|++..-+...
T Consensus 242 ~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 242 SLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred CEEEEEEcCCeEEEEecCcchhhc
Confidence 899999999999999988765543
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.4e-08 Score=71.46 Aligned_cols=132 Identities=20% Similarity=0.216 Sum_probs=104.0
Q ss_pred CccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCC-CEEEEE
Q psy2113 41 QKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDP-QLFVSA 118 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~ 118 (183)
.......|..|.+.|+.|.|+..| .|++|+.|..|.+||....... .....+|...|....|-|..+ +-++++
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~-----l~f~SGH~~NvfQaKFiP~s~d~ti~~~ 205 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK-----LSFESGHCNNVFQAKFIPFSGDRTIVTS 205 (559)
T ss_pred HhhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc-----cccccccccchhhhhccCCCCCcCceec
Confidence 344566788999999999999655 5899999999999998776542 334467888888888988543 578999
Q ss_pred eCCCeEEEEeCCCCCc-c-eEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCCCC
Q psy2113 119 SFDNSVKLWDLRSPKV-P-LFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 119 ~~dg~i~vwd~~~~~~-~-~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+.||.+++=.+..... . ...+..|.++|..++..|+ ..|.+++.|+.+.-+|++.....
T Consensus 206 s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa 268 (559)
T KOG1334|consen 206 SRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPA 268 (559)
T ss_pred cccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCcc
Confidence 9999999876654332 1 3456789999999999876 78999999999999999876543
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.7e-06 Score=64.64 Aligned_cols=121 Identities=17% Similarity=0.224 Sum_probs=77.8
Q ss_pred eEEEeccCCCeeEEEEccCCe-EEEEeCC---CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEE-EEEe
Q psy2113 45 LITLKGHKEAISAVQWTAVDE-IITSSWD---HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF-VSAS 119 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~-l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~ 119 (183)
...+..+...+....|+|+++ ++.++.+ ..|++||+.++.. ..+..+...+.+.+|+| ++..| ++.+
T Consensus 182 ~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~-------~~~~~~~~~~~~~~~sp-Dg~~l~~~~~ 253 (417)
T TIGR02800 182 PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR-------EKVASFPGMNGAPAFSP-DGSKLAVSLS 253 (417)
T ss_pred CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE-------EEeecCCCCccceEECC-CCCEEEEEEC
Confidence 344555666788999999887 5544432 5799999987652 23334556677889999 66655 4554
Q ss_pred CCC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec-CCC--cEEEEEecCCC
Q psy2113 120 FDN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG-QDN--SVRVFKTKHQP 175 (183)
Q Consensus 120 ~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~-~dg--~i~iwd~~~~~ 175 (183)
.++ .|++||+.++. ...+..+........|+++ ..|+..+ .++ .|.++|+.+++
T Consensus 254 ~~~~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~ 313 (417)
T TIGR02800 254 KDGNPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE 313 (417)
T ss_pred CCCCccEEEEECCCCC--EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 444 58899998765 3444445545556789865 6665443 344 47777776543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-07 Score=64.63 Aligned_cols=134 Identities=14% Similarity=0.232 Sum_probs=88.3
Q ss_pred EEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCCCccCce
Q psy2113 13 VIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKKGAI 90 (183)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~~~~~~~ 90 (183)
..|+|+|.+++...-. .+. ..+..+.+..+.+ .--+.|.-+.|.-+.. |.....++.|.+|++...+.
T Consensus 14 c~fSp~g~yiAs~~~y--rlv--iRd~~tlq~~qlf-~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew----- 83 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY--RLV--IRDSETLQLHQLF-LCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW----- 83 (447)
T ss_pred eeECCCCCeeeeeeee--EEE--EeccchhhHHHHH-HHHHHhhheeeeccceeeeeeeeccceEEEEEeeccee-----
Confidence 4599999999886621 110 0012221111111 1245677888985554 45567889999999987765
Q ss_pred eEEEeecCCcceEEEEEecCCC-CEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 91 VKSTFSSHKEWVQSVRWSPIDP-QLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 91 ~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
...+......+..++|+| ++ .++.+...|-.|.||.+.+.+. ..++.....+..++|+++ ++.+..
T Consensus 84 -~ckIdeg~agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~--~~~~~pK~~~kg~~f~~dg~f~ai~ 151 (447)
T KOG4497|consen 84 -YCKIDEGQAGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKG--YLLPHPKTNVKGYAFHPDGQFCAIL 151 (447)
T ss_pred -EEEeccCCCcceeeeECC-CcceEeeeecceeEEEEEEecccee--EEecccccCceeEEECCCCceeeee
Confidence 556677788899999999 56 5666777899999999998774 333333445688899976 444433
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.4e-06 Score=63.39 Aligned_cols=121 Identities=17% Similarity=0.267 Sum_probs=78.1
Q ss_pred eEEEeccCCCeeEEEEccCCe-EEEEeCC---CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEE-EEe
Q psy2113 45 LITLKGHKEAISAVQWTAVDE-IITSSWD---HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFV-SAS 119 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~-l~s~~~d---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~ 119 (183)
...+..+...+....|+|++. |+..+.+ ..|.+||+.+++. ..+....+.+....|+| +++.++ +..
T Consensus 191 ~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~-------~~l~~~~g~~~~~~~Sp-DG~~la~~~~ 262 (430)
T PRK00178 191 AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR-------EQITNFEGLNGAPAWSP-DGSKLAFVLS 262 (430)
T ss_pred ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE-------EEccCCCCCcCCeEECC-CCCEEEEEEc
Confidence 345556777889999999876 5554432 4688999987653 23333344556789999 676655 554
Q ss_pred CCC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEE-EecCCC--cEEEEEecCCC
Q psy2113 120 FDN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIM-SGGQDN--SVRVFKTKHQP 175 (183)
Q Consensus 120 ~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~-~~~~dg--~i~iwd~~~~~ 175 (183)
.+| .|++||+.++. ...+..+........|+|+ ..++ +...+| .|.++|+.+++
T Consensus 263 ~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 263 KDGNPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred cCCCceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 455 68888998875 3445555555667889965 5554 444444 46667766543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=8.3e-06 Score=61.21 Aligned_cols=157 Identities=13% Similarity=0.143 Sum_probs=87.7
Q ss_pred EEEEEeecCcEEEEEEecc--CCCCccccccc---CccceEEEeccCCCeeEEEEccCCe-EEEEe-CCCeEEEEEc--C
Q psy2113 11 LGVIFMTVGALLTLTNIEV--TSLPSFFQLIL---QKTPLITLKGHKEAISAVQWTAVDE-IITSS-WDHTLKIWDA--E 81 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~v~vwd~--~ 81 (183)
...+|+|||..++...-.. ..+.....+.. .+........+.+......|+|+|. |+..+ .++...+|.+ .
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 4578999998877643110 01111000111 1222222323334456789999987 55443 4665555543 3
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC---CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD---NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
..... ...+..+...+....|+| +++.|+..+.+ ..|.+||+.+++. ..+......+....|+|+ ..|
T Consensus 314 ~~g~~-----~~~lt~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~--~~Lt~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 314 PEGQS-----PRLLTKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRD--YQLTTSPENKESPSWAIDSLHL 385 (428)
T ss_pred ccccc-----eEEeccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCe--EEccCCCCCccceEECCCCCEE
Confidence 21110 223444455677889999 77777655432 3799999988764 333333345677899965 555
Q ss_pred E-EecC--CCcEEEEEecCCC
Q psy2113 158 M-SGGQ--DNSVRVFKTKHQP 175 (183)
Q Consensus 158 ~-~~~~--dg~i~iwd~~~~~ 175 (183)
+ +... ...|.++|+..++
T Consensus 386 ~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 386 VYSAGNSNESELYLISLITKK 406 (428)
T ss_pred EEEECCCCCceEEEEECCCCC
Confidence 4 4433 3468888887654
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.5e-07 Score=77.07 Aligned_cols=122 Identities=15% Similarity=0.236 Sum_probs=85.5
Q ss_pred ccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 50 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 50 ~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
.+-..|.++.-+|... +++|+.||.+++|....+... ...-......|+.+.|+. +|+.+..+..||.+.+|.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v-----~~~rt~g~s~vtr~~f~~-qGnk~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV-----VCFRTAGNSRVTRSRFNH-QGNKFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE-----EEeeccCcchhhhhhhcc-cCCceeeeccCCceeecc
Confidence 3455666776667655 889999999999998665431 111112236677777777 677777777777777776
Q ss_pred CCCCC-----c-------------------------------------ceEEeccCCCcEEEEEecCC-cEEEEecCCCc
Q psy2113 129 LRSPK-----V-------------------------------------PLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNS 165 (183)
Q Consensus 129 ~~~~~-----~-------------------------------------~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~ 165 (183)
..... + .-....+|.+.++++++.|. +.|++|+.+|.
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGE 2359 (2439)
T ss_pred cCCcceeccccCCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCc
Confidence 54211 0 11122678899999999987 89999999999
Q ss_pred EEEEEecCCCCC
Q psy2113 166 VRVFKTKHQPKS 177 (183)
Q Consensus 166 i~iwd~~~~~~~ 177 (183)
|++||++..+..
T Consensus 2360 v~l~D~rqrql~ 2371 (2439)
T KOG1064|consen 2360 VCLFDIRQRQLR 2371 (2439)
T ss_pred EEEeehHHHHHH
Confidence 999999876543
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.63 E-value=9e-07 Score=66.28 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=62.5
Q ss_pred cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 97 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 97 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
..+..|.+.+++| ++..++.|+.||.|.+||...+. .......-.++.++|+|+ ..+++|+..|.+.+||+.-..
T Consensus 257 pL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~---t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 257 PLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGV---TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred ecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCe---eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 4678899999999 88899999999999999998764 333345567899999976 788899999999999976544
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.3e-07 Score=70.41 Aligned_cols=122 Identities=19% Similarity=0.445 Sum_probs=93.5
Q ss_pred CeeEEEEccC---CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 54 AISAVQWTAV---DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 54 ~v~~~~~~~~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
.|-.+.|++. ...+.......-.+|++..... ..+...+.+|...|+.+.|+|+....+++++.|-.+..||++
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~---~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSS---NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCc---cceEEEEecCccceeccccCCCCCcceeeccccccceeeecc
Confidence 5778889854 3345555555666899864332 222445678999999999999888999999999999999999
Q ss_pred CCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 131 SPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
....+......-......|+|+ .+..+.+.+....|++||++.+..+.
T Consensus 146 Sp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl 194 (1081)
T KOG0309|consen 146 SPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPL 194 (1081)
T ss_pred CCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcce
Confidence 9988777777666777899999 44556666777789999999886553
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.9e-07 Score=64.01 Aligned_cols=82 Identities=21% Similarity=0.413 Sum_probs=69.8
Q ss_pred EeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CC-cEEEEecCCCcEEEEEe
Q psy2113 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DY-RYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 94 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~iwd~ 171 (183)
.+..+...|..++|+|....++..++.+.+|++.|+++... +..+..+ ..+++++|. ++ ++|++|-..|.|.|||+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-VSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEeccccee-eeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 45677888999999995555899999999999999999775 6666666 789999999 44 89999999999999999
Q ss_pred cCCCCC
Q psy2113 172 KHQPKS 177 (183)
Q Consensus 172 ~~~~~~ 177 (183)
+..+..
T Consensus 266 R~~~~~ 271 (463)
T KOG1645|consen 266 RQPEGP 271 (463)
T ss_pred cCCCch
Confidence 987654
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.59 E-value=6.5e-07 Score=68.77 Aligned_cols=121 Identities=17% Similarity=0.213 Sum_probs=90.7
Q ss_pred cCCCeeEEEEc-cCCeEEEEeCCCeEEEEEcCCCCCc---------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeC
Q psy2113 51 HKEAISAVQWT-AVDEIITSSWDHTLKIWDAELGGMK---------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 51 h~~~v~~~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
......+++|+ .+|.++.|+.||.+++-.+.+.... ......+.+.+|+..|..+.|+. ..+.+-|...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe-~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE-NNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc-ccccccccCC
Confidence 34467899999 5688999999999999988764322 11223456789999999999998 7788999999
Q ss_pred CCeEEEEeCCCCCcce-EEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEec
Q psy2113 121 DNSVKLWDLRSPKVPL-FDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 121 dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~ 172 (183)
+|.|.||-+-.+.-.- ..-....+.|.+++|+ ++..+...-.||.|.+=.+.
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvd 145 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVD 145 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeec
Confidence 9999999998775311 1223345788999999 66888888888887654443
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.6e-06 Score=62.17 Aligned_cols=74 Identities=14% Similarity=0.282 Sum_probs=59.9
Q ss_pred ccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 50 GHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 50 ~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
.....|.+.+++|+. +++.|..||.|.+||...+.. ......-.++.++|+| ++..++.|+..|.+.+||
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--------~~~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--------LLAKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFD 327 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--------eeeeecccceEEEEcC-CCcEEEEEcCCceEEEEE
Confidence 366788999999764 599999999999999875432 2223455678999999 899999999999999999
Q ss_pred CCCC
Q psy2113 129 LRSP 132 (183)
Q Consensus 129 ~~~~ 132 (183)
+.-.
T Consensus 328 ~ALs 331 (545)
T PF11768_consen 328 MALS 331 (545)
T ss_pred eecC
Confidence 9643
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=98.58 E-value=5.2e-07 Score=64.61 Aligned_cols=103 Identities=17% Similarity=0.273 Sum_probs=79.3
Q ss_pred cceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC
Q psy2113 43 TPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
++..-+.+|...|.+++|+|.+ .+..++.+.+|.|.|+++... ...+..+ ..+++++|..++.+++..|..
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~------vssy~a~-~~~wSC~wDlde~h~IYaGl~ 256 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV------VSSYIAY-NQIWSCCWDLDERHVIYAGLQ 256 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee------eeheecc-CCceeeeeccCCcceeEEecc
Confidence 3345667788899999999764 478899999999999998765 4455555 789999999978889999999
Q ss_pred CCeEEEEeCCCCCcceEEecc--CCCcEEEEEec
Q psy2113 121 DNSVKLWDLRSPKVPLFDMLG--HEDKVMCVNWS 152 (183)
Q Consensus 121 dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~ 152 (183)
+|.|.+||++..+.++..+.+ ...+|..++..
T Consensus 257 nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~ 290 (463)
T KOG1645|consen 257 NGMVLVYDMRQPEGPLMELVANVTINPVHKIAPV 290 (463)
T ss_pred CceEEEEEccCCCchHhhhhhhhccCcceeeccc
Confidence 999999999987754444443 23455555544
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.1e-05 Score=55.37 Aligned_cols=118 Identities=10% Similarity=0.075 Sum_probs=85.3
Q ss_pred eeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC
Q psy2113 55 ISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK 133 (183)
Q Consensus 55 v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~ 133 (183)
++++.+++++. +++.+....|..|.+......- ...........-.+.+|+. ....++++..||++.+||+|...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~---~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYI---ENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCcccee---eeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccc
Confidence 67888888887 5566777889999887644311 1112233344457788888 67799999999999999999765
Q ss_pred cce----EEeccCCCcEEEEEecCC---cEEEEecCCCcEEEEEecCCCC
Q psy2113 134 VPL----FDMLGHEDKVMCVNWSDY---RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 134 ~~~----~~~~~~~~~v~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.+. .....|.+.+..+.|++. .+|+-.-.-+.+++.|+|+...
T Consensus 237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence 432 344568899999999943 5666666667899999988653
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-05 Score=58.34 Aligned_cols=162 Identities=11% Similarity=0.121 Sum_probs=81.7
Q ss_pred eEEEEEeecCcEEEE--EEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEe-CCC----eEEEEEcC
Q psy2113 10 TLGVIFMTVGALLTL--TNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSS-WDH----TLKIWDAE 81 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~----~v~vwd~~ 81 (183)
..+-.|+|+|..++. ...+.-....+..+...+ ....+....+......|+|+|+ |+..+ .+| .+.+|++.
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~ 265 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-AGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE 265 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECCCC-CceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence 345689999975432 221111111111122222 2233333444556789999986 54332 222 33446665
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe-CCCeEEEE--eCCCCCcceEEeccCCCcEEEEEecCC-cEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS-FDNSVKLW--DLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~vw--d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
.+.... ...............+|+| +++.|+..+ .+|...+| ++.........+..+...+....|+|+ +.|
T Consensus 266 ~g~~g~---~~~lt~~~~~~~~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~L 341 (428)
T PRK01029 266 TGAIGK---PRRLLNEAFGTQGNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKI 341 (428)
T ss_pred cCCCCc---ceEeecCCCCCcCCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEE
Confidence 431111 1112222223446789999 777666554 45644444 543221113334444456678899976 666
Q ss_pred EEecC-C--CcEEEEEecCCCC
Q psy2113 158 MSGGQ-D--NSVRVFKTKHQPK 176 (183)
Q Consensus 158 ~~~~~-d--g~i~iwd~~~~~~ 176 (183)
+..+. + ..|.+||+.+++.
T Consensus 342 af~~~~~g~~~I~v~dl~~g~~ 363 (428)
T PRK01029 342 AFCSVIKGVRQICVYDLATGRD 363 (428)
T ss_pred EEEEcCCCCcEEEEEECCCCCe
Confidence 54433 3 3689999877643
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.53 E-value=6e-05 Score=55.48 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=94.0
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EE-EEeCCCeEEEEEcCCCCCc
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-II-TSSWDHTLKIWDAELGGMK 86 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~v~vwd~~~~~~~ 86 (183)
...++.|+|+|+.+.+.+... .....+..+.+.+.+++...+ -.+++++++|+ ++ +....+.+.++|.++.+.
T Consensus 38 ~h~~~~~s~Dgr~~yv~~rdg---~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~- 112 (369)
T PF02239_consen 38 PHAGLKFSPDGRYLYVANRDG---TVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEP- 112 (369)
T ss_dssp EEEEEE-TT-SSEEEEEETTS---EEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEETTT--E-
T ss_pred ceeEEEecCCCCEEEEEcCCC---eEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEeccccccc-
Confidence 466788999999888776211 111124556667777765444 57899999887 33 445789999999988765
Q ss_pred cCceeEEEeec-------CCcceEEEEEecCCCC-EEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE
Q psy2113 87 KGAIVKSTFSS-------HKEWVQSVRWSPIDPQ-LFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 87 ~~~~~~~~~~~-------~~~~v~~~~~~p~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
...+.. ....+..+..+| ... ++++--..+.|.+-|..+.+.+...............|+|+ +++
T Consensus 113 -----v~~I~~~~~~~~~~~~Rv~aIv~s~-~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~ 186 (369)
T PF02239_consen 113 -----VKTIPTGGMPVDGPESRVAAIVASP-GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYF 186 (369)
T ss_dssp -----EEEEE--EE-TTTS---EEEEEE-S-SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEE
T ss_pred -----eeecccccccccccCCCceeEEecC-CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCccccee
Confidence 223221 234577887788 454 55555556899888988776534444445567788999976 555
Q ss_pred E-EecCCCcEEEEEecCCC
Q psy2113 158 M-SGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 158 ~-~~~~dg~i~iwd~~~~~ 175 (183)
+ +...+..|-++|.++++
T Consensus 187 ~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 187 LVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp EEEEGGGTEEEEEETTTTE
T ss_pred eecccccceeEEEeeccce
Confidence 4 45667789999977654
|
... |
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=5.6e-06 Score=58.47 Aligned_cols=162 Identities=20% Similarity=0.321 Sum_probs=102.8
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCccccccc---CccceEEEeccC------------CCeeEEEEccCC---eEEEEeC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLIL---QKTPLITLKGHK------------EAISAVQWTAVD---EIITSSW 71 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~------------~~v~~~~~~~~~---~l~s~~~ 71 (183)
..++.|...|..+++++-. ..+..+.+... .-.....++.|. ..|+.+.|.+++ .++..+.
T Consensus 28 is~vef~~~Ge~LatGdkg-GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstN 106 (433)
T KOG1354|consen 28 ISAVEFDHYGERLATGDKG-GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTN 106 (433)
T ss_pred eeeEEeecccceEeecCCC-CeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecC
Confidence 4578899999999998711 11111111111 111223333443 468899999553 3788899
Q ss_pred CCeEEEEEcCCCCCcc-----------------------------CceeEEE-eecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 72 DHTLKIWDAELGGMKK-----------------------------GAIVKST-FSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 72 d~~v~vwd~~~~~~~~-----------------------------~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
|.++++|.+....... ...+.+. -..|...|.+++++. +...++++ .|
T Consensus 107 dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns-D~Et~lSA-Dd 184 (433)
T KOG1354|consen 107 DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS-DKETFLSA-DD 184 (433)
T ss_pred CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC-ccceEeec-cc
Confidence 9999999987543221 0111111 135778899999998 66677766 47
Q ss_pred CeEEEEeCCCCCcc--eEEeccC-----CCcEEEEEecCC--cEEEEecCCCcEEEEEecCC
Q psy2113 122 NSVKLWDLRSPKVP--LFDMLGH-----EDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 122 g~i~vwd~~~~~~~--~~~~~~~-----~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 174 (183)
=.|.+|+++-.... +...+.+ ..-|++..|+|. +.++-.+..|+|++.|+|..
T Consensus 185 LRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~ 246 (433)
T KOG1354|consen 185 LRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQS 246 (433)
T ss_pred eeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhh
Confidence 78999999754331 1122222 245788899975 78888889999999999943
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.3e-05 Score=60.60 Aligned_cols=119 Identities=13% Similarity=0.174 Sum_probs=73.7
Q ss_pred EEeccCCCeeEEEEccCCe-EEEEeC-C--CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEE-EEeCC
Q psy2113 47 TLKGHKEAISAVQWTAVDE-IITSSW-D--HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFV-SASFD 121 (183)
Q Consensus 47 ~~~~h~~~v~~~~~~~~~~-l~s~~~-d--~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~d 121 (183)
.+..+...+....|+|+|. ++..+. + ..|++||+.+++. ..+....+......|+| +++.|+ +.+.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~-------~~lt~~~g~~~~~~wSP-DG~~La~~~~~~ 283 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR-------EKVTSFPGINGAPRFSP-DGKKLALVLSKD 283 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe-------EEecCCCCCcCCeeECC-CCCEEEEEEeCC
Confidence 4445566788999999986 544432 2 3688889876553 12222233345789999 666554 55666
Q ss_pred C--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEE-EecCCCc--EEEEEecCCC
Q psy2113 122 N--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIM-SGGQDNS--VRVFKTKHQP 175 (183)
Q Consensus 122 g--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~-~~~~dg~--i~iwd~~~~~ 175 (183)
| .|+++|+.+++ ...+..+........|+|+ ..++ +...++. |.++|+.+++
T Consensus 284 g~~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 284 GQPEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred CCeEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 6 48888888765 3445555556677899965 5554 4444444 5666665543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.7e-05 Score=55.59 Aligned_cols=128 Identities=12% Similarity=0.121 Sum_probs=81.4
Q ss_pred ccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEE
Q psy2113 39 ILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 117 (183)
Q Consensus 39 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 117 (183)
..+.+.+..+......-..+.++|+++ ++.++.|+.|.++|+.+.+. ...+.. ......+++++ +++++++
T Consensus 23 ~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~------v~~i~~-G~~~~~i~~s~-DG~~~~v 94 (369)
T PF02239_consen 23 GATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV------VATIKV-GGNPRGIAVSP-DGKYVYV 94 (369)
T ss_dssp TTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE------EEEEE--SSEEEEEEE---TTTEEEE
T ss_pred CCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE------EEEEec-CCCcceEEEcC-CCCEEEE
Confidence 445666777776554445577888876 67778999999999998775 445543 34568899999 7777776
Q ss_pred Ee-CCCeEEEEeCCCCCcceEEecc-------CCCcEEEEEecCC-c-EEEEecCCCcEEEEEecCCC
Q psy2113 118 AS-FDNSVKLWDLRSPKVPLFDMLG-------HEDKVMCVNWSDY-R-YIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 118 ~~-~dg~i~vwd~~~~~~~~~~~~~-------~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~ 175 (183)
+. ..+.+.++|.++.+. +..+.. ..+.+..+..++. . ++++.-..+.|.+-|....+
T Consensus 95 ~n~~~~~v~v~D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 95 ANYEPGTVSVIDAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EEEETTEEEEEETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EecCCCceeEeccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 64 689999999999875 444432 2346677776654 4 55666666888888876653
|
... |
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-05 Score=52.99 Aligned_cols=158 Identities=11% Similarity=-0.001 Sum_probs=92.3
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC-CeEEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~ 84 (183)
..++++++++++++..+ +-.|.++. ....-+........+.-.+..|+.. ..++++..||++.|||++...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~----~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDD----ESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCC----ccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 56788999999988755 22222211 1111111233445556678899854 459999999999999998755
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCC-CEEEEEeCCCeEEEEeCCCCCcceEEec-------cCCCc-EEEEEecCC-
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDP-QLFVSASFDNSVKLWDLRSPKVPLFDML-------GHEDK-VMCVNWSDY- 154 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~-v~~~~~~~~- 154 (183)
.....+ ..+-..|.+.+..+.|+|.+. .+|.-.-.-+.+.+.|+|+.+. .+.+. .|... +..-.|++.
T Consensus 237 tpm~~~-sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~-~q~I~i~~d~~~~~~tq~ifgt~f~~~n 314 (344)
T KOG4532|consen 237 TPMAEI-SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN-HQVIVIPDDVERKHNTQHIFGTNFNNEN 314 (344)
T ss_pred cchhhh-cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce-eeEEecCccccccccccccccccccCCC
Confidence 422111 122345889999999998332 2444444457899999998864 22222 22222 666677733
Q ss_pred cEEEEecCCCcEEEEEecCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~ 174 (183)
..+.+.+. -.+.=|++.+.
T Consensus 315 ~s~~v~~e-~~~ae~ni~sr 333 (344)
T KOG4532|consen 315 ESNDVKNE-LQGAEYNILSR 333 (344)
T ss_pred cccccccc-hhhheeecccc
Confidence 33333332 23444554443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0001 Score=61.20 Aligned_cols=120 Identities=16% Similarity=0.207 Sum_probs=80.0
Q ss_pred CeeEEEEccCCe--EEEEeCCCeEEEEEcCCCCCccCc-------eeEEEeec--------CCcceEEEEEecCCCCEEE
Q psy2113 54 AISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKKGA-------IVKSTFSS--------HKEWVQSVRWSPIDPQLFV 116 (183)
Q Consensus 54 ~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~~~~~~-------~~~~~~~~--------~~~~v~~~~~~p~~~~~l~ 116 (183)
....|+++|++. +++-+.++.|++||+.++...... .....+.. .-.....+++++ ++++++
T Consensus 741 ~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEE
Confidence 346799998764 556677899999998765421000 00000000 011346889999 788888
Q ss_pred EEeCCCeEEEEeCCCCCcceEEecc--------------CCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 117 SASFDNSVKLWDLRSPKVPLFDMLG--------------HEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~~~~~~~~~~--------------~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+-..++.|++||..++.. ..+.+ .-.....++++++ ..+++-+.++.|++||+++++.
T Consensus 820 ADs~N~rIrviD~~tg~v--~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 820 ADSYNHKIKKLDPATKRV--TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred EECCCCEEEEEECCCCeE--EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 888899999999987653 22222 1235678899854 7778888899999999988654
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.2e-05 Score=57.97 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=85.8
Q ss_pred EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCc
Q psy2113 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK 145 (183)
Q Consensus 66 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 145 (183)
++-|...|.|-+|+...++... ...-..|.+.|.++.++. +-..|.+++.|+.+..|+...... .....+....
T Consensus 73 lvlgt~~g~v~~ys~~~g~it~----~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~-~~~~~~~~~~ 146 (541)
T KOG4547|consen 73 LVLGTPQGSVLLYSVAGGEITA----KLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVI-IRIWKEQKPL 146 (541)
T ss_pred EEeecCCccEEEEEecCCeEEE----EEecCCCCCcceeeeccc-ccCceEecCCceeEEEEeccccee-eeeeccCCCc
Confidence 6778889999999998877521 112246999999999988 777999999999999999998875 7777888889
Q ss_pred EEEEEecCC-cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 146 VMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 146 v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+.+++.+|+ ..+++++ ++|.+||+++++...
T Consensus 147 ~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~ 178 (541)
T KOG4547|consen 147 VSSLCISPDGKILLTAS--RQIKVLDIETKEVVI 178 (541)
T ss_pred cceEEEcCCCCEEEecc--ceEEEEEccCceEEE
Confidence 999999976 7777665 689999999887543
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=5.8e-05 Score=55.81 Aligned_cols=117 Identities=16% Similarity=0.204 Sum_probs=89.3
Q ss_pred ccCCCeeEEEEccC-CeEEEEeCCC-eEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEE
Q psy2113 50 GHKEAISAVQWTAV-DEIITSSWDH-TLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 127 (183)
Q Consensus 50 ~h~~~v~~~~~~~~-~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vw 127 (183)
+|.+.|.-..+..+ ..++.|..|| .+-|+|.++++ ...+...-+.|.++..+| ++..++.+.....+.+.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e-------~kr~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vi 428 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE-------VKRIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVI 428 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce-------EEEeeCCccceEEEEEcC-CCcEEEEEcCceEEEEE
Confidence 45556666666533 3588899998 89999998876 345566678899999999 88899999888899999
Q ss_pred eCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCC----cEEEEEecCCC
Q psy2113 128 DLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDN----SVRVFKTKHQP 175 (183)
Q Consensus 128 d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg----~i~iwd~~~~~ 175 (183)
|+.++.. ...-+...+-|+..+|+|+ ..++-+--+| .|+++|+..++
T Consensus 429 didngnv-~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 429 DIDNGNV-RLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred EecCCCe-eEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 9999985 3344455678999999987 6666554444 58999988754
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00012 Score=53.45 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=96.0
Q ss_pred eceeEEEEEeecCcEEEEEEeccCCCCcccccccC--ccceEEEec-cCCCeeEEEEccCCe--EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQ--KTPLITLKG-HKEAISAVQWTAVDE--IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~ 81 (183)
+-....+.|+|+++.+.+.++..-.+..+..+... ..+...+.. ....-+.+.|+|++. +++.-.++.|.++++.
T Consensus 143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence 44556789999999999887544333333222222 112223322 234568899999876 4567788999999988
Q ss_pred CCCCccCceeEEEeec----C--CcceEEEEEecCCCCEEEEE-eCCCeEEEEeCCC--CCc-ceEEeccCCCcEEEEEe
Q psy2113 82 LGGMKKGAIVKSTFSS----H--KEWVQSVRWSPIDPQLFVSA-SFDNSVKLWDLRS--PKV-PLFDMLGHEDKVMCVNW 151 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~----~--~~~v~~~~~~p~~~~~l~~~-~~dg~i~vwd~~~--~~~-~~~~~~~~~~~v~~~~~ 151 (183)
...... ........ . ......++++| +++++.+. ..++.|.+|++.. +.. .+............+.+
T Consensus 223 ~~~g~~--~~~~~~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~ 299 (345)
T PF10282_consen 223 PSDGSL--TEIQTISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAF 299 (345)
T ss_dssp TTTTEE--EEEEEEESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE
T ss_pred ccCCce--eEEEEeeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEE
Confidence 322211 11111111 1 22578999999 67665554 4567999999943 332 12233333445799999
Q ss_pred cCC-cEEEEec-CCCcEEEEEecC
Q psy2113 152 SDY-RYIMSGG-QDNSVRVFKTKH 173 (183)
Q Consensus 152 ~~~-~~l~~~~-~dg~i~iwd~~~ 173 (183)
+++ ++|+++. .++.|.+|++..
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEET
T ss_pred eCCCCEEEEEecCCCeEEEEEEeC
Confidence 965 6666555 577899998753
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.38 E-value=4.1e-06 Score=58.53 Aligned_cols=161 Identities=18% Similarity=0.271 Sum_probs=105.5
Q ss_pred cceeceeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEecc-----CCCeeEEEEccCC--eEEEEeCCC
Q psy2113 4 NKFGILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGH-----KEAISAVQWTAVD--EIITSSWDH 73 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~--~l~s~~~d~ 73 (183)
|.......++.|+.+...+..++ +.+|.+...... -.+-.++.| ...|++..|+|.. .+.-.+..|
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~s----FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG 244 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGS----FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKG 244 (460)
T ss_pred ccceeEeeeeeecCchheeeeccceeeeeccccccCCc----eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCC
Confidence 44556677888999888777666 778887643221 112223334 3468899999764 477788899
Q ss_pred eEEEEEcCCCCCccCce----------eEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCC
Q psy2113 74 TLKIWDAELGGMKKGAI----------VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHE 143 (183)
Q Consensus 74 ~v~vwd~~~~~~~~~~~----------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 143 (183)
.|++-|++......... ....+.+-...|..+.|++ +++++++-+. -++++||++..+.|+.+..-|.
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 99999998543211000 0011122345688999999 8889887653 5899999999887777775553
Q ss_pred ------------CcE---EEEEec-CCcEEEEecCCCcEEEEE
Q psy2113 144 ------------DKV---MCVNWS-DYRYIMSGGQDNSVRVFK 170 (183)
Q Consensus 144 ------------~~v---~~~~~~-~~~~l~~~~~dg~i~iwd 170 (183)
+.| ..+.|+ ++..+++|+.....-++-
T Consensus 323 ~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 323 DLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 223 345666 457888888777666654
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.9e-06 Score=64.13 Aligned_cols=119 Identities=19% Similarity=0.252 Sum_probs=94.0
Q ss_pred CeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCC-----------CCEEEEEeCCC
Q psy2113 54 AISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID-----------PQLFVSASFDN 122 (183)
Q Consensus 54 ~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----------~~~l~~~~~dg 122 (183)
.-.++.|+|+|.++-|+.. .|.+-|.++.+. ++.+..|+..|+.+.|.|.. .-+|+++...|
T Consensus 17 N~~A~Dw~~~GLiAygshs-lV~VVDs~s~q~------iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 17 NRNAADWSPSGLIAYGSHS-LVSVVDSRSLQL------IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccCccceEEEecCc-eEEEEehhhhhh------hhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3568899999998887654 677888887665 66777899999999998731 12567777889
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEecC---C--cEEEEecCCCcEEEEEecCCCCCCCc
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD---Y--RYIMSGGQDNSVRVFKTKHQPKSGQK 180 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~---~--~~l~~~~~dg~i~iwd~~~~~~~~~~ 180 (183)
.|.+||...... ...+..|.+++.++.|-+ . ..|++-....+|.+|+..++++--++
T Consensus 90 rIil~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~ 151 (1062)
T KOG1912|consen 90 RIILVDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKY 151 (1062)
T ss_pred cEEEEEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecc
Confidence 999999998876 667888899999999972 2 57777777889999999998876543
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-06 Score=61.47 Aligned_cols=101 Identities=13% Similarity=0.199 Sum_probs=77.7
Q ss_pred EEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC---cceEEeccCC
Q psy2113 67 ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK---VPLFDMLGHE 143 (183)
Q Consensus 67 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~ 143 (183)
++.+.+-.+-+-|++++-. ..+ ..++.|.++.|.. .++++..|+.+|.|...|++... .-.....-|.
T Consensus 228 fs~G~sqqv~L~nvetg~~-------qsf-~sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~ 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-------QSF-QSKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHD 298 (425)
T ss_pred ecccccceeEEEEeecccc-------ccc-ccchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEEcC
Confidence 5556677777777776542 123 3567789999988 78899999999999999999752 1134445688
Q ss_pred CcEEEEEec--CCcEEEEecCCCcEEEEEecCCCC
Q psy2113 144 DKVMCVNWS--DYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 144 ~~v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+.|+++.-. .+++|++.+.+|+|.+||+|.-+.
T Consensus 299 Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~ 333 (425)
T KOG2695|consen 299 SSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC 333 (425)
T ss_pred cchhhhhhhccccceEeeccCcCceeEeeehhhhc
Confidence 999998876 358999999999999999997665
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=3.5e-05 Score=60.97 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=91.9
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCeEEEEeC---------CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEe
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDEIITSSW---------DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWS 108 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~---------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 108 (183)
+....+.+.++.+|.+.|..+.. .++.|++|+. |.-|+|||++.-+.. ..+.-+.+ ..-+.|+
T Consensus 203 D~~s~~~iht~~aHs~siSDfDv-~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral------~PI~~~~~-P~flrf~ 274 (1118)
T KOG1275|consen 203 DPNSFETIHTFDAHSGSISDFDV-QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRAL------SPIQFPYG-PQFLRFH 274 (1118)
T ss_pred cCCcCceeeeeeccccceeeeec-cCCeEEEeecccccccccccchhhhhhhhhhhcc------CCcccccC-chhhhhc
Confidence 55677889999999999987765 3466777765 456899999875532 12222222 2557788
Q ss_pred cCCCCEEEEEeCCCeEEEEeC---CCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 109 PIDPQLFVSASFDNSVKLWDL---RSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 109 p~~~~~l~~~~~dg~i~vwd~---~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
|.-...++.++..|.+.+-|. .++..-+.......+.+..++++++ +.++.|..+|.|.+|--+..
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~ 344 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQ 344 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCC
Confidence 866678888888999999994 3333224444555566899999955 89999999999999984443
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00056 Score=57.00 Aligned_cols=119 Identities=12% Similarity=0.144 Sum_probs=73.9
Q ss_pred eEEEEcc-CCe-EEEEeCCCeEEEEEcCCCCCccCc--eeEEEeec------CCcceEEEEEecCCCC-EEEEEeCCCeE
Q psy2113 56 SAVQWTA-VDE-IITSSWDHTLKIWDAELGGMKKGA--IVKSTFSS------HKEWVQSVRWSPIDPQ-LFVSASFDNSV 124 (183)
Q Consensus 56 ~~~~~~~-~~~-l~s~~~d~~v~vwd~~~~~~~~~~--~~~~~~~~------~~~~v~~~~~~p~~~~-~l~~~~~dg~i 124 (183)
..++++| ++. +++.+.++.|++||..++...... -......+ .-.....++++| ++. ++++-..++.|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavsp-dG~~LYVADs~n~~I 764 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSP-DLKELYIADSESSSI 764 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeC-CCCEEEEEECCCCeE
Confidence 5789987 555 567778899999998765321000 00000000 112456799999 555 66677778999
Q ss_pred EEEeCCCCCcceEE------------ecc--------CCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 125 KLWDLRSPKVPLFD------------MLG--------HEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 125 ~vwd~~~~~~~~~~------------~~~--------~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
++||+.++...... +-. .-.....++++++ ..+++-..++.|++||..++.
T Consensus 765 rv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 765 RALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred EEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe
Confidence 99999876421100 000 0112467888854 777888889999999987643
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.4e-06 Score=57.96 Aligned_cols=127 Identities=21% Similarity=0.318 Sum_probs=85.3
Q ss_pred eccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCC-----cceEEEEEecCCCCEEEEEeCCCe
Q psy2113 49 KGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK-----EWVQSVRWSPIDPQLFVSASFDNS 123 (183)
Q Consensus 49 ~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~p~~~~~l~~~~~dg~ 123 (183)
..|.--|+++.++.+...+..+.|-.|.+|++.-... ...+..+++|. .-|++..|+|..-+.+.-.+..|.
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~---sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~ 245 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSADDLRINLWNLEIIDG---SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGE 245 (460)
T ss_pred ccceeEeeeeeecCchheeeeccceeeeeccccccCC---ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCc
Confidence 3566678899999887766667788999999864322 11233444553 347888999965667777778899
Q ss_pred EEEEeCCCCCcc-----eE----------EeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCCCC
Q psy2113 124 VKLWDLRSPKVP-----LF----------DMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 124 i~vwd~~~~~~~-----~~----------~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~ 179 (183)
|++-|+|....+ .. -+.+--+.|..+.|+++ .++++-. --++++||++..+.+..
T Consensus 246 Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pik 316 (460)
T COG5170 246 IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIK 316 (460)
T ss_pred EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCce
Confidence 999999954321 10 11122346788999977 4665543 46899999998776543
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=2.9e-05 Score=58.93 Aligned_cols=93 Identities=22% Similarity=0.267 Sum_probs=72.5
Q ss_pred CCeeEEEEccC-CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceE-EEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 53 EAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQ-SVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 53 ~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
-.|..+.|+|. ..+|.+..+|.+-+..+.-.+ +..+.-+...++ +++|.| +|.+++.|-.||+|++.|++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qR-------lwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQR-------LWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEeccce-------eEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEcc
Confidence 35778999987 458889999999888876322 566665666777 999999 89999999999999999999
Q ss_pred CCCcceEEeccCCCcEEEEEecC
Q psy2113 131 SPKVPLFDMLGHEDKVMCVNWSD 153 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~~~~~~ 153 (183)
++............+|.++-|.+
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCceeccccccccchheeeccc
Confidence 98763333344566788888863
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.5e-05 Score=37.47 Aligned_cols=36 Identities=44% Similarity=0.648 Sum_probs=31.4
Q ss_pred EEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 92 KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 92 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
...+..|...|.++.|+| .+..+++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 445667888999999999 678999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00041 Score=41.52 Aligned_cols=99 Identities=15% Similarity=0.232 Sum_probs=67.1
Q ss_pred eeEEEEc---cC--CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 55 ISAVQWT---AV--DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 55 v~~~~~~---~~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
|+++++. .+ +.|+.|+.|..||+|+-.. . ...+. ....|+++.-.. ...++.+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~------~~Ei~-e~~~v~~L~~~~--~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--I------VAEIT-ETDKVTSLCSLG--GGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--E------EEEEe-cccceEEEEEcC--CCEEEEEecCCEEEEEeC
Confidence 5667665 23 3499999999999998543 1 33333 445678877665 367899999999999987
Q ss_pred CCCCcceEEeccCCCcEEEEEecC----C-cEEEEecCCCcEEE
Q psy2113 130 RSPKVPLFDMLGHEDKVMCVNWSD----Y-RYIMSGGQDNSVRV 168 (183)
Q Consensus 130 ~~~~~~~~~~~~~~~~v~~~~~~~----~-~~l~~~~~dg~i~i 168 (183)
.... -..+ ....+.++.+.+ + ..|++|..+|.|-+
T Consensus 71 ~~Rl---WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 SQRL---WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred ccee---eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5432 2222 233466766652 2 58999999998753
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0021 Score=48.31 Aligned_cols=154 Identities=10% Similarity=0.078 Sum_probs=83.7
Q ss_pred eeEEEEEeecCcE-EEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EE-EEeC--CCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGAL-LTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-II-TSSW--DHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~--d~~v~vwd~~~~ 83 (183)
...+-.|+|+|.. ++....+.-....+..+...++. ..+....+......|+|++. ++ +.+. +..|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-EKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-EEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 5567889999984 55443321111112223333332 33333555566788999885 33 3433 356777787665
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe-CCC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEE
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS-FDN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~ 159 (183)
.. ..+..+........|+| +++.++-.+ ..+ .|++.|+.+++. ..+...... ...|+|+ +.++-
T Consensus 268 ~~-------~~LT~~~~~d~~p~~SP-DG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~~g~~--~~~~SPDG~~Ia~ 335 (419)
T PRK04043 268 TL-------TQITNYPGIDVNGNFVE-DDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVFHGKN--NSSVSTYKNYIVY 335 (419)
T ss_pred cE-------EEcccCCCccCccEECC-CCCEEEEEECCCCCceEEEEECCCCCe--EeCccCCCc--CceECCCCCEEEE
Confidence 42 23433443334567999 666555544 333 688888887663 222211111 2478965 55544
Q ss_pred ecCC---------CcEEEEEecCCC
Q psy2113 160 GGQD---------NSVRVFKTKHQP 175 (183)
Q Consensus 160 ~~~d---------g~i~iwd~~~~~ 175 (183)
.... ..|.+.|+.++.
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCC
Confidence 4332 257777876654
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00012 Score=57.25 Aligned_cols=129 Identities=16% Similarity=0.260 Sum_probs=90.8
Q ss_pred cccCccceEEEeccCCCeeEEEEccC-----------Ce--EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEE
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAV-----------DE--IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~-----------~~--l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~ 104 (183)
+....+.++.++.|...|+.+.|.|- .. |+++...|.|.+||...... ...+..|..++..
T Consensus 41 Ds~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~------~~~l~~~~~~~qd 114 (1062)
T KOG1912|consen 41 DSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV------INWLSHSNDSVQD 114 (1062)
T ss_pred ehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh------hhhhcCCCcchhh
Confidence 34455677888889999999999742 11 56777789999999987654 4467778888999
Q ss_pred EEEecC--CC-CEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC--CcEEEEecCCCcEEEEEecC
Q psy2113 105 VRWSPI--DP-QLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD--YRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 105 ~~~~p~--~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~l~~~~~dg~i~iwd~~~ 173 (183)
++|-|. +. ..++.-....++.+|+..++.. .-..........|+.+.| ..++..-+..|.+.+-+.-.
T Consensus 115 l~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 115 LCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred eeeeeccCcchheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccC
Confidence 998663 23 4666667778999999999875 434444444556677774 25666666677777766443
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=8.8e-07 Score=67.07 Aligned_cols=163 Identities=15% Similarity=0.274 Sum_probs=101.1
Q ss_pred ccceeceeEEEEEeec-CcEEEEEE--------eccCCCCcccccccCccceEEEec-cCCCeeEEEEccCCe-EEEEeC
Q psy2113 3 TNKFGILTLGVIFMTV-GALLTLTN--------IEVTSLPSFFQLILQKTPLITLKG-HKEAISAVQWTAVDE-IITSSW 71 (183)
Q Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~-l~s~~~ 71 (183)
|+++.-.|.+++|++- ...++++- +.+|+++..... ++.-..+.+ -.....+++|-.+.+ +++|..
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv---Pke~~~fs~~~l~gqns~cwlrd~klvlaGm~ 174 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV---PKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT 174 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCC---CccccccccccccCccccccccCcchhhcccc
Confidence 5677778999999885 34444432 666766654321 111122222 344556888885555 678888
Q ss_pred CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe-CCCCCcceEEeccCC----CcE
Q psy2113 72 DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD-LRSPKVPLFDMLGHE----DKV 146 (183)
Q Consensus 72 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd-~~~~~~~~~~~~~~~----~~v 146 (183)
.+.+.++|++..... ...-....+..+...|-.++++++-. ||.|-+|| .++-+.++......+ ..+
T Consensus 175 sr~~~ifdlRqs~~~-------~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l 246 (783)
T KOG1008|consen 175 SRSVHIFDLRQSLDS-------VSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQL 246 (783)
T ss_pred cchhhhhhhhhhhhh-------hhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccce
Confidence 889999999853321 11112234556677775666777665 99999999 555444343333333 348
Q ss_pred EEEEecCC--cEEEEecC-CCcEEEEEecCCCC
Q psy2113 147 MCVNWSDY--RYIMSGGQ-DNSVRVFKTKHQPK 176 (183)
Q Consensus 147 ~~~~~~~~--~~l~~~~~-dg~i~iwd~~~~~~ 176 (183)
..++|.|. ..+++... .++|+.+|+..-..
T Consensus 247 ~~~aycPtrtglla~l~RdS~tIrlydi~~v~t 279 (783)
T KOG1008|consen 247 FALAYCPTRTGLLAVLSRDSITIRLYDICVVGT 279 (783)
T ss_pred eeEEeccCCcchhhhhccCcceEEEecccccCC
Confidence 99999965 56666655 46799999876443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=98.04 E-value=2e-05 Score=37.03 Aligned_cols=37 Identities=35% Similarity=0.593 Sum_probs=30.8
Q ss_pred cceEEEeccCCCeeEEEEccC-CeEEEEeCCCeEEEEE
Q psy2113 43 TPLITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWD 79 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~-~~l~s~~~d~~v~vwd 79 (183)
.+...+..|...|.++.|.+. ..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667789999999999975 4588999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0019 Score=44.85 Aligned_cols=142 Identities=11% Similarity=0.070 Sum_probs=84.1
Q ss_pred eceeEEEEEeecCcEEEEEEeccCCCC----cccccccCccceEEEeccCCCeeEEEEccCCe-E-EEEeCCCeEEEEEc
Q psy2113 7 GILTLGVIFMTVGALLTLTNIEVTSLP----SFFQLILQKTPLITLKGHKEAISAVQWTAVDE-I-ITSSWDHTLKIWDA 80 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~ 80 (183)
...+.++++.++|.+..+......... ..+..... ..+..+...-...+.|+|+|++. | ++-+..+.|..+++
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~ 163 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDL 163 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEec
Confidence 346778999999997666542211111 11111112 22333333455678999999875 4 46778889999998
Q ss_pred CCCCC-ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec
Q psy2113 81 ELGGM-KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152 (183)
Q Consensus 81 ~~~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 152 (183)
..... .........+....+..-.+++.. ++++.++....+.|.++|.+ ++. +..+......+++++|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~-~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 164 DADGGELSNRRVFIDFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKL-LREIELPVPRPTNCAFG 233 (246)
T ss_dssp ETTTCCEEEEEEEEE-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCE-EEEEE-SSSSEEEEEEE
T ss_pred cccccceeeeeeEEEcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccE-EEEEcCCCCCEEEEEEE
Confidence 64332 111111112222223477899999 88888888888999999998 554 44444444589999995
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00022 Score=53.49 Aligned_cols=105 Identities=17% Similarity=0.409 Sum_probs=70.3
Q ss_pred eeEEEEEeecCcEEEEEE------eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEe---CCCeEEEE
Q psy2113 9 LTLGVIFMTVGALLTLTN------IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSS---WDHTLKIW 78 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~---~d~~v~vw 78 (183)
.+.++.|+|+++-+++.- +.++ ..++.++..+ -.++=+++-|+|.|. ++.++ ..|.|.||
T Consensus 272 PVhdv~W~~s~~EF~VvyGfMPAkvtif--------nlr~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvw 341 (566)
T KOG2315|consen 272 PVHDVTWSPSGREFAVVYGFMPAKVTIF--------NLRGKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVW 341 (566)
T ss_pred CceEEEECCCCCEEEEEEecccceEEEE--------cCCCCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEE
Confidence 456778899887776642 2222 2344555444 455667899999887 33333 45899999
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC------CCeEEEEeCCCC
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF------DNSVKLWDLRSP 132 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~vwd~~~~ 132 (183)
|..+.+. +..+.. ...+-+.|+| +|++|+|+.. |+.+++|+....
T Consensus 342 Dv~n~K~------i~~~~a--~~tt~~eW~P-dGe~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 342 DVPNRKL------IAKFKA--ANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred eccchhh------cccccc--CCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEecCc
Confidence 9988554 333333 2346678999 8899988864 678999998643
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00012 Score=56.45 Aligned_cols=111 Identities=14% Similarity=0.144 Sum_probs=74.1
Q ss_pred cCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 51 HKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 51 h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
-.+.+..+..++... .++|+..|.|.++-+..............-..|+..|++++|++ ++..+.+|...|+|..-.+
T Consensus 75 ~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L 153 (726)
T KOG3621|consen 75 ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTEL 153 (726)
T ss_pred ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEe
Confidence 344455556666666 56778889999988876333222222212234788999999999 8999999999999988777
Q ss_pred CCC---CcceEEeccCCCcEEEEEecCCcEEEEecC
Q psy2113 130 RSP---KVPLFDMLGHEDKVMCVNWSDYRYIMSGGQ 162 (183)
Q Consensus 130 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 162 (183)
... ....+.+..-.+.|-.+++.....|++...
T Consensus 154 ~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~ 189 (726)
T KOG3621|consen 154 DSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLT 189 (726)
T ss_pred chhhhhccccceeeccCcceEEeecccceehHhhhh
Confidence 652 122445555667888888877655554443
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00025 Score=55.46 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=72.7
Q ss_pred CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecC----CCCEEEEEeCCCeEEEEeCCC--CCcceE
Q psy2113 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI----DPQLFVSASFDNSVKLWDLRS--PKVPLF 137 (183)
Q Consensus 64 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~----~~~~l~~~~~dg~i~vwd~~~--~~~~~~ 137 (183)
..+++|+.||+|.|..+-+.+. ... .....++.+++++|+ ....+++|+..| +.++.-+- .+. ..
T Consensus 84 ey~asCS~DGkv~I~sl~~~~~------~~~-~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~-~v 154 (846)
T KOG2066|consen 84 EYVASCSDDGKVVIGSLFTDDE------ITQ-YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD-SV 154 (846)
T ss_pred ceEEEecCCCcEEEeeccCCcc------cee-EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc-ce
Confidence 3499999999999998877664 222 235678999999994 256899999888 66664431 111 12
Q ss_pred EeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 138 DMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 138 ~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
.+....++|.++.|.. ++++= ..|--|++||+...+...
T Consensus 155 ~l~~~eG~I~~i~W~g-~lIAW-and~Gv~vyd~~~~~~l~ 193 (846)
T KOG2066|consen 155 VLSEGEGPIHSIKWRG-NLIAW-ANDDGVKVYDTPTRQRLT 193 (846)
T ss_pred eeecCccceEEEEecC-cEEEE-ecCCCcEEEeccccceee
Confidence 4556678999999975 34444 445568999988776543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0034 Score=45.98 Aligned_cols=161 Identities=12% Similarity=0.080 Sum_probs=91.4
Q ss_pred EEEEEeecCcEEEEEEec---cCCCCcccccc--cCccceEEEeccCCCeeEEEEccCCe-EEEEe-CCCeEEEEEcCCC
Q psy2113 11 LGVIFMTVGALLTLTNIE---VTSLPSFFQLI--LQKTPLITLKGHKEAISAVQWTAVDE-IITSS-WDHTLKIWDAELG 83 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~v~vwd~~~~ 83 (183)
.-++++|++..+.+.+-. ...+..+..+. ...+.+.........-..++++|++. ++++. .+|.+.++++...
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~ 119 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDD 119 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCC
Confidence 346778888887776532 12222222222 22334444443344455788888876 44444 6899999999874
Q ss_pred CCccCceeEEEee--------cCCcceEEEEEecCCCCEEEEEe-CCCeEEEEeCCCCCcceE----EeccCCCcEEEEE
Q psy2113 84 GMKKGAIVKSTFS--------SHKEWVQSVRWSPIDPQLFVSAS-FDNSVKLWDLRSPKVPLF----DMLGHEDKVMCVN 150 (183)
Q Consensus 84 ~~~~~~~~~~~~~--------~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~vwd~~~~~~~~~----~~~~~~~~v~~~~ 150 (183)
............. ......+++.++| +++++++.. ....|.+|++......+. ...........+.
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~ 198 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA 198 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence 3211111011110 1234578999999 777666554 355899999987652121 1224445679999
Q ss_pred ecCC-cEEE-EecCCCcEEEEEec
Q psy2113 151 WSDY-RYIM-SGGQDNSVRVFKTK 172 (183)
Q Consensus 151 ~~~~-~~l~-~~~~dg~i~iwd~~ 172 (183)
|+|+ ++++ +.-.++.|.++++.
T Consensus 199 f~pdg~~~Yv~~e~s~~v~v~~~~ 222 (345)
T PF10282_consen 199 FSPDGKYAYVVNELSNTVSVFDYD 222 (345)
T ss_dssp E-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EcCCcCEEEEecCCCCcEEEEeec
Confidence 9976 5554 45558889999988
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.4e-05 Score=60.10 Aligned_cols=141 Identities=15% Similarity=0.184 Sum_probs=91.2
Q ss_pred eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCc-------------------
Q psy2113 27 IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMK------------------- 86 (183)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~------------------- 86 (183)
++.|++..-.+...+.....+++.|+.+|+++.|-.+.+ +++ .|+-+.+||.--+...
T Consensus 759 VKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~ 836 (1034)
T KOG4190|consen 759 VKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE 836 (1034)
T ss_pred EEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeee--ccCcceeecccccchhHhhhcCcccCCCceeEecc
Confidence 677777655555666677888899999999999986554 444 4889999996322211
Q ss_pred --------------c----------CceeEEEe---ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe
Q psy2113 87 --------------K----------GAIVKSTF---SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM 139 (183)
Q Consensus 87 --------------~----------~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 139 (183)
. ........ .+....+.+++..| .++.++.+-.+|.|.+.|.++++. +...
T Consensus 837 nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~v-INsw 914 (1034)
T KOG4190|consen 837 NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKV-INSW 914 (1034)
T ss_pred cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCce-eccC
Confidence 0 00000011 12234577888888 889999999999999999999985 5555
Q ss_pred ccCCCcEEEEEecCCcEEEEecCCCcEEE-EEe
Q psy2113 140 LGHEDKVMCVNWSDYRYIMSGGQDNSVRV-FKT 171 (183)
Q Consensus 140 ~~~~~~v~~~~~~~~~~l~~~~~dg~i~i-wd~ 171 (183)
+..+.....++--.++.++....|..+.+ |-.
T Consensus 915 rpmecdllqlaapsdq~L~~saldHslaVnWha 947 (1034)
T KOG4190|consen 915 RPMECDLLQLAAPSDQALAQSALDHSLAVNWHA 947 (1034)
T ss_pred CcccchhhhhcCchhHHHHhhcccceeEeeehh
Confidence 55444444333222356666666666666 643
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.6e-05 Score=62.89 Aligned_cols=125 Identities=15% Similarity=0.261 Sum_probs=91.7
Q ss_pred CccceEEEeccCCCeeEEEEcc-CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe
Q psy2113 41 QKTPLITLKGHKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS 119 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 119 (183)
..+....+..|....+|++|+- .+.|+.|+..|.|+++++.++.. .....+|...|+-+.-+. ++...++.+
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~------e~s~ncH~SavT~vePs~-dgs~~Ltss 1162 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM------EESVNCHQSAVTLVEPSV-DGSTQLTSS 1162 (1516)
T ss_pred hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc------cccccccccccccccccC-Ccceeeeec
Confidence 3456677888999999999994 56699999999999999998876 557889999999998888 565555544
Q ss_pred -CCC-eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 120 -FDN-SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 120 -~dg-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
... ..-+|+...--.+.+.+. .-.++.|++. ..-+.|+......+||+.+...
T Consensus 1163 s~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred cccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcH
Confidence 333 567999875333344443 3367888865 4445555556789999988654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00048 Score=56.54 Aligned_cols=161 Identities=15% Similarity=0.191 Sum_probs=93.8
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEe----ccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLK----GHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~ 84 (183)
+-..++|.|+|.+++........ ....-.+.++-....|. .....|..+.|++++.+++.-....|.+|-..+..
T Consensus 258 Le~~l~WrPsG~lIA~~q~~~~~-~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~vqLWt~~NYH 336 (928)
T PF04762_consen 258 LEGALSWRPSGNLIASSQRLPDR-HDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDRVQLWTRSNYH 336 (928)
T ss_pred ccCCccCCCCCCEEEEEEEcCCC-cEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCCceEEEeeCCE
Confidence 34578899999999987742211 11111122222222222 34567999999988875544445559999886543
Q ss_pred CccCceeEEEee-cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC----CCCCc-------------------------
Q psy2113 85 MKKGAIVKSTFS-SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL----RSPKV------------------------- 134 (183)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~----~~~~~------------------------- 134 (183)
. .+.+.+. .....+..+.|+|.....+.....+|.+..++. .....
T Consensus 337 W----YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 337 W----YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred E----EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEeccccc
Confidence 2 1122222 122334558899866666666666565543332 21100
Q ss_pred ----c-eEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 135 ----P-LFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 135 ----~-~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
| ......-..+|.+++|+++ ..+++-..||.|.+|.....
T Consensus 413 ~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 413 VVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred CCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 0 1111133578999999965 56889999999999986554
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=7e-05 Score=58.10 Aligned_cols=156 Identities=15% Similarity=0.191 Sum_probs=102.9
Q ss_pred EEEEEeecCcEEEEEE----eccCCCCccccccc--------CccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEE
Q psy2113 11 LGVIFMTVGALLTLTN----IEVTSLPSFFQLIL--------QKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKI 77 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~v 77 (183)
..++|+....+++.++ +++..+.....+.. +...-+++.||+++|.-+.|+.+. +|-+...+|.|.+
T Consensus 18 ~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiV 97 (1189)
T KOG2041|consen 18 HCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIV 97 (1189)
T ss_pred EEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEEE
Confidence 3456788777777765 44444433222211 122346789999999999999654 5888889999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cE
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RY 156 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 156 (183)
|-+-.+..-... .-...++-|.+++|+. +|+.+...-.||.|.|=.+...+.--..+.+. ....+.|+++ ..
T Consensus 98 WmlykgsW~EEM----iNnRnKSvV~SmsWn~-dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~ws~D~~~ 170 (1189)
T KOG2041|consen 98 WMLYKGSWCEEM----INNRNKSVVVSMSWNL-DGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLWSEDLEQ 170 (1189)
T ss_pred EeeecccHHHHH----hhCcCccEEEEEEEcC-CCcEEEEEEccCCEEEEeeccceecchhcchh--eccceeecccHHH
Confidence 987654431110 0112345688999999 88888888899988887776544211122221 2346889976 66
Q ss_pred EEEecCCCcEEEEEecC
Q psy2113 157 IMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~ 173 (183)
++.+-.+|.++++|...
T Consensus 171 ~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 171 ALFKKANGETHLYDNQG 187 (1189)
T ss_pred HHhhhcCCcEEEecccc
Confidence 77777889999998654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0031 Score=47.29 Aligned_cols=114 Identities=15% Similarity=0.302 Sum_probs=80.1
Q ss_pred ccCCCeeEEEEccCCe---EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC---Ce
Q psy2113 50 GHKEAISAVQWTAVDE---IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD---NS 123 (183)
Q Consensus 50 ~h~~~v~~~~~~~~~~---l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~ 123 (183)
+-.++|....|.|.+. +++|-.+-.+.++|++.+- .+......-..+-|+| .+++++.++.| |.
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl---------~~~~Pe~~rNT~~fsp-~~r~il~agF~nl~gn 341 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNL---------RFYFPEQKRNTIFFSP-HERYILFAGFDNLQGN 341 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccce---------EEecCCcccccccccC-cccEEEEecCCccccc
Confidence 5578999999997654 4556688899999998642 2333445557788999 88888887665 68
Q ss_pred EEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecC------CCcEEEEEecCCC
Q psy2113 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQ------DNSVRVFKTKHQP 175 (183)
Q Consensus 124 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~------dg~i~iwd~~~~~ 175 (183)
+-+||.......+..+.+.. ..-+.|+|+ +++.+... |..|.|||+....
T Consensus 342 i~i~~~~~rf~~~~~~~~~n--~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~ 398 (561)
T COG5354 342 IEIFDPAGRFKVAGAFNGLN--TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAK 398 (561)
T ss_pred eEEeccCCceEEEEEeecCC--ceEeeccCCceEEEecCCCcccccCcceEEEEecCch
Confidence 99999987655343554442 344679977 66555432 7789999987543
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00028 Score=56.13 Aligned_cols=96 Identities=15% Similarity=0.178 Sum_probs=73.5
Q ss_pred CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC---------CCeEEEEeCCCCCc
Q psy2113 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF---------DNSVKLWDLRSPKV 134 (183)
Q Consensus 64 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------dg~i~vwd~~~~~~ 134 (183)
..+.+|...|+|.+-|..+.+. .+.+..|.+.+..+.. .+++|++++. |..|+|||+|+.+.
T Consensus 188 r~lf~G~t~G~V~LrD~~s~~~------iht~~aHs~siSDfDv---~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 188 RNLFCGDTRGTVFLRDPNSFET------IHTFDAHSGSISDFDV---QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred cEEEeecccceEEeecCCcCce------eeeeeccccceeeeec---cCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 3477888999999999988765 7899999999998876 6788888863 66789999998764
Q ss_pred ceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEE
Q psy2113 135 PLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFK 170 (183)
Q Consensus 135 ~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd 170 (183)
+.-+.-+.++ .-+.|+|. ..+++.+..|...+-|
T Consensus 259 -l~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 259 -LSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred -cCCcccccCc-hhhhhcccccceEEEEecccceeecc
Confidence 3223333333 55677775 7788888889988888
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00054 Score=52.99 Aligned_cols=106 Identities=15% Similarity=0.185 Sum_probs=77.8
Q ss_pred cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe--
Q psy2113 62 AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM-- 139 (183)
Q Consensus 62 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-- 139 (183)
....++.|+.-|.+++|+-..+... .....+..+.+..+..++ ...+++.|+..|.|.++.+.....+-..+
T Consensus 44 t~~~l~~GsS~G~lyl~~R~~~~~~-----~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t 117 (726)
T KOG3621|consen 44 TEEYLAMGSSAGSVYLYNRHTGEMR-----KLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDLDYVT 117 (726)
T ss_pred CCceEEEecccceEEEEecCchhhh-----cccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence 3455888999999999987665542 112223455566677888 77889999999999999887643321111
Q ss_pred ---ccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecC
Q psy2113 140 ---LGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 140 ---~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 173 (183)
..|...|+++.|+++ ..+++|...|+|..-.+..
T Consensus 118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 236788999999955 9999999999998877765
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0035 Score=46.66 Aligned_cols=117 Identities=15% Similarity=0.166 Sum_probs=75.2
Q ss_pred CeeEEEEccC-CeEEEEeCCCeEEEEEcCCCCCc-------------------------------------cCceeEEEe
Q psy2113 54 AISAVQWTAV-DEIITSSWDHTLKIWDAELGGMK-------------------------------------KGAIVKSTF 95 (183)
Q Consensus 54 ~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~-------------------------------------~~~~~~~~~ 95 (183)
.|..+.|.+. ..|+.|...|.|-||....++.. ....+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4778888865 67999999999988876432111 112233334
Q ss_pred ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceE-Eecc------CCCcEEEEEec------CC---cEEEE
Q psy2113 96 SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLF-DMLG------HEDKVMCVNWS------DY---RYIMS 159 (183)
Q Consensus 96 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~------~~~~v~~~~~~------~~---~~l~~ 159 (183)
....++|++++.+- -| +++.|..+|.+.|.|+|.+..... .+.. ....|+++.|. ++ -.+++
T Consensus 83 ~~~~g~vtal~~S~-iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSD-IG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-B-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCC-Cc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 45578899999974 44 899999999999999988764222 1112 23468888886 22 47889
Q ss_pred ecCCCcEEEEEec
Q psy2113 160 GGQDNSVRVFKTK 172 (183)
Q Consensus 160 ~~~dg~i~iwd~~ 172 (183)
|...|.+.+|.+-
T Consensus 161 GTn~G~v~~fkIl 173 (395)
T PF08596_consen 161 GTNSGNVLTFKIL 173 (395)
T ss_dssp EETTSEEEEEEEE
T ss_pred EeCCCCEEEEEEe
Confidence 9999999999875
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0026 Score=50.98 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=84.1
Q ss_pred cccCccceEEEeccCCC-eeEEEEc------cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecC
Q psy2113 38 LILQKTPLITLKGHKEA-ISAVQWT------AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI 110 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~-v~~~~~~------~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 110 (183)
+...++.+...+.|... |..++=. .+..-+.|-.+..+..||.|-............+ .......|++-..
T Consensus 510 DLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~- 587 (794)
T PF08553_consen 510 DLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTE- 587 (794)
T ss_pred ecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecC-
Confidence 56677777788777654 5555422 0123566777888899999864311000001111 2345678888776
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcEEEEecCCCcEEEEEec
Q psy2113 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~ 172 (183)
+| +|+.|+.+|.|++||--. ..-...+++-..+|..|+.+. +..+++ ..+..|.+++..
T Consensus 588 ~G-~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI~~iDvt~DGkwila-Tc~tyLlLi~t~ 647 (794)
T PF08553_consen 588 DG-YIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPIIGIDVTADGKWILA-TCKTYLLLIDTL 647 (794)
T ss_pred Cc-eEEEEeCCCcEEeecccc-hhhhhcCCCCCCCeeEEEecCCCcEEEE-eecceEEEEEEe
Confidence 44 899999999999999543 333566778889999999994 455544 446778888754
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0073 Score=43.33 Aligned_cols=159 Identities=12% Similarity=0.092 Sum_probs=95.0
Q ss_pred EEEEeecCcEEEEEEec--cCCCCcccccccCc--cceEEEeccCCCeeEEEEccCCe-EEEEe-CCCeEEEEEcCCCCC
Q psy2113 12 GVIFMTVGALLTLTNIE--VTSLPSFFQLILQK--TPLITLKGHKEAISAVQWTAVDE-IITSS-WDHTLKIWDAELGGM 85 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~v~vwd~~~~~~ 85 (183)
=++++|+++.+.+.+-. ...+..+..+...+ ..+........+-..++.+++++ ++++. ..|.|.++-++....
T Consensus 44 yl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~ 123 (346)
T COG2706 44 YLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGS 123 (346)
T ss_pred eEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCc
Confidence 36788888777665522 33333333333222 22222222233337788888887 44443 458999999876432
Q ss_pred ccCceeEEEeecCCcc----------eEEEEEecCCCCEEEEEeC-CCeEEEEeCCCCCcce--EEeccCCCcEEEEEec
Q psy2113 86 KKGAIVKSTFSSHKEW----------VQSVRWSPIDPQLFVSASF-DNSVKLWDLRSPKVPL--FDMLGHEDKVMCVNWS 152 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~----------v~~~~~~p~~~~~l~~~~~-dg~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~ 152 (183)
... ......|.+. ++...+.| +++++++..- --.|.+|++..+.... ............|.|+
T Consensus 124 l~~---~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FH 199 (346)
T COG2706 124 LQP---VVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFH 199 (346)
T ss_pred ccc---ceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEc
Confidence 111 1122234443 88999999 8888877753 3479999998765311 1111334556899999
Q ss_pred CC-cEEEEecC-CCcEEEEEecCC
Q psy2113 153 DY-RYIMSGGQ-DNSVRVFKTKHQ 174 (183)
Q Consensus 153 ~~-~~l~~~~~-dg~i~iwd~~~~ 174 (183)
|+ ++.+..++ +++|.+|.....
T Consensus 200 pn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 200 PNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred CCCcEEEEEeccCCEEEEEEEcCC
Confidence 87 66655554 899999998875
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00036 Score=53.31 Aligned_cols=78 Identities=13% Similarity=0.283 Sum_probs=64.9
Q ss_pred CcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEE-EEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVM-CVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 99 ~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~-~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
...+..+.|+| .-.++|.+..+|.+.+..+. ... +-.+.-+...++ +++|.|+ +.|+.|-.||+|++-|+.++..
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qR-lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQR-LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cce-eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 45678899999 88899999999999999887 333 667776777776 9999965 8999999999999999998876
Q ss_pred CCC
Q psy2113 177 SGQ 179 (183)
Q Consensus 177 ~~~ 179 (183)
..+
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 554
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0081 Score=46.19 Aligned_cols=155 Identities=12% Similarity=0.257 Sum_probs=88.3
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCC-----eEEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD-----EIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~l~s~~~d~~v~vwd~~~~~ 84 (183)
..++|| .||..+....+...+-.-. ..... .-+.-+-|.++.|.|-+ .|++.-....|.||.+....
T Consensus 22 vhGlaW-TDGkqVvLT~L~l~~gE~k---fGds~----viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 22 VHGLAW-TDGKQVVLTDLQLHNGEPK---FGDSK----VIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred ccceEe-cCCCEEEEEeeeeeCCccc---cCCcc----EeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 445665 5677766666443321110 01111 23455578999999642 38888889999999986433
Q ss_pred CccCceeEEEeecC--Cc--ceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCc-EEE
Q psy2113 85 MKKGAIVKSTFSSH--KE--WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYR-YIM 158 (183)
Q Consensus 85 ~~~~~~~~~~~~~~--~~--~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~l~ 158 (183)
.........+.-.. .- -...+.|+| ....++.-..+..-.+++++.....+..-....+.|.|.+|. +++ +++
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVV 172 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVV 172 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEE
Confidence 22211111111111 11 124677999 565665555444545667765543344444567889999999 554 445
Q ss_pred EecCCCcEEEEEecC
Q psy2113 159 SGGQDNSVRVFKTKH 173 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~ 173 (183)
+.+..=.-++||-..
T Consensus 173 AvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 173 AVGSSLHSYIWDSAQ 187 (671)
T ss_pred EeCCeEEEEEecCch
Confidence 555556678998543
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0048 Score=50.91 Aligned_cols=157 Identities=15% Similarity=0.224 Sum_probs=88.4
Q ss_pred eeEEEEEeecCcEEEEEEeccCCC--CcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCC----CeEEEEEcCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSL--PSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWD----HTLKIWDAEL 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d----~~v~vwd~~~ 82 (183)
-...+.|-.||.++++..+....- ..+......+....+-+.-.+--..++|.|+|.++++... ..|.+|.-.
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN- 289 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERN- 289 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-
Confidence 346788999999999987532221 1111111222222222222222346789999986665432 455555532
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcc-eEEec-cCCCcEEEEEecCC--cEEE
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP-LFDML-GHEDKVMCVNWSDY--RYIM 158 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~-~~~~~v~~~~~~~~--~~l~ 158 (183)
+-. ...... .+......|..+.|++ ++..|+....|. |.+|-..+-.-. ++.+. .....+..+.|+|. ..|.
T Consensus 290 GLr-hgeF~l-~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 290 GLR-HGEFTL-RFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLH 365 (928)
T ss_pred CcE-eeeEec-CCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEE
Confidence 221 111111 1123456799999999 888888876554 999988775421 22222 22334555999964 6677
Q ss_pred EecCCCcEEEEE
Q psy2113 159 SGGQDNSVRVFK 170 (183)
Q Consensus 159 ~~~~dg~i~iwd 170 (183)
..+.+|.+..++
T Consensus 366 v~t~~g~~~~~~ 377 (928)
T PF04762_consen 366 VLTSNGQYEIYD 377 (928)
T ss_pred EEecCCcEEEEE
Confidence 777767765544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0021 Score=47.64 Aligned_cols=105 Identities=15% Similarity=0.105 Sum_probs=67.0
Q ss_pred cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc
Q psy2113 62 AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG 141 (183)
Q Consensus 62 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 141 (183)
.++.++.++.++.+..+|..+++. ................ ++..++.++.++.+..+|.++++. .-...
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~------~W~~~~~~~~~~~p~v---~~~~v~v~~~~g~l~ald~~tG~~-~W~~~- 132 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKR------LWRVDLDERLSGGVGA---DGGLVFVGTEKGEVIALDAEDGKE-LWRAK- 132 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcE------eeeecCCCCcccceEE---cCCEEEEEcCCCEEEEEECCCCcE-eeeec-
Confidence 357788889999999999888775 3333222211112222 345777788899999999998875 32222
Q ss_pred CCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 142 HEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 142 ~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
....+.+.....+..++.++.+|.|..||.++++..
T Consensus 133 ~~~~~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 133 LSSEVLSPPLVANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred cCceeecCCEEECCEEEEECCCCeEEEEEcCCCcee
Confidence 222222111112456777888999999999887653
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0035 Score=46.85 Aligned_cols=85 Identities=18% Similarity=0.290 Sum_probs=65.4
Q ss_pred cceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 43 TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
.++..+...-+.|.++..+++|+ ++.+.....+.+.|+.+++. ...-+...+.|+.+.|+| ++++++-+--+
T Consensus 392 ~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv------~~idkS~~~lItdf~~~~-nsr~iAYafP~ 464 (668)
T COG4946 392 GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV------RLIDKSEYGLITDFDWHP-NSRWIAYAFPE 464 (668)
T ss_pred ceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe------eEecccccceeEEEEEcC-CceeEEEecCc
Confidence 34556667778899999999988 66666678899999998875 222234567799999999 88888877655
Q ss_pred C----eEEEEeCCCCCc
Q psy2113 122 N----SVKLWDLRSPKV 134 (183)
Q Consensus 122 g----~i~vwd~~~~~~ 134 (183)
| .|+++|+..++.
T Consensus 465 gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 465 GYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ceeeeeEEEEecCCCeE
Confidence 5 689999998763
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0013 Score=48.69 Aligned_cols=96 Identities=8% Similarity=0.029 Sum_probs=58.9
Q ss_pred CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCC-cceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc
Q psy2113 63 VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK-EWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG 141 (183)
Q Consensus 63 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 141 (183)
++.++.++.+|.+..+|..+++. ........ ........ .+..+++++.+|.++++|..+++. +.....
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~------~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~-~~~~~~ 348 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSE------LWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSF-VARLKT 348 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcE------EEccccccCCccccCEE---ECCEEEEEeCCCEEEEEECCCCCE-EEEEEc
Confidence 34566677778888888766653 22221111 11111112 245788889999999999999886 555555
Q ss_pred CCCcEE-EEEecCCcEEEEecCCCcEEEE
Q psy2113 142 HEDKVM-CVNWSDYRYIMSGGQDNSVRVF 169 (183)
Q Consensus 142 ~~~~v~-~~~~~~~~~l~~~~~dg~i~iw 169 (183)
+...+. ...+.+ +.|+.++.||.|..|
T Consensus 349 ~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 349 DGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 544332 223333 568889999998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0046 Score=46.83 Aligned_cols=127 Identities=16% Similarity=0.141 Sum_probs=83.3
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCe--------EEEEeCCCeEEEEEcCCCCCccCceeEEEeecC----CcceEEE
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDE--------IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH----KEWVQSV 105 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~----~~~v~~~ 105 (183)
+...++.+.+.+-+.+ |+-+.+.|+.. =+.|-.+..|.-||++-.... .+...++| .....|.
T Consensus 362 DIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----kl~~~q~kqy~~k~nFsc~ 436 (644)
T KOG2395|consen 362 DIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----KLAVVQSKQYSTKNNFSCF 436 (644)
T ss_pred ecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----eeeeeecccccccccccee
Confidence 5566777777776666 66677776543 234556778888998853321 12222333 2345666
Q ss_pred EEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecC
Q psy2113 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 106 ~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 173 (183)
+-.. ..+++.|+.+|.|++||--. ..-...+++-..+|..|..+ ++..|++ ..+..+.+-++.-
T Consensus 437 aTT~--sG~IvvgS~~GdIRLYdri~-~~AKTAlPgLG~~I~hVdvtadGKwil~-Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 437 ATTE--SGYIVVGSLKGDIRLYDRIG-RRAKTALPGLGDAIKHVDVTADGKWILA-TCKTYLLLIDTLI 501 (644)
T ss_pred eecC--CceEEEeecCCcEEeehhhh-hhhhhcccccCCceeeEEeeccCcEEEE-ecccEEEEEEEec
Confidence 6544 34899999999999999844 33367788899999999998 4455544 4466777766543
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00026 Score=56.17 Aligned_cols=110 Identities=12% Similarity=0.160 Sum_probs=75.1
Q ss_pred EEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCcee
Q psy2113 13 VIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIV 91 (183)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~ 91 (183)
..|+|...++++..+..-.-........+++|..... ..-.+++++|+|... |+.|=.-|.+.+|...+.+.
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~------ 93 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET------ 93 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee------
Confidence 3588888898887755433222222222333221111 111246799999876 66777789999999876553
Q ss_pred EEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 92 KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 92 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
-.....|+.++..+.|+| +|..++++..-|.+.+|...
T Consensus 94 htv~~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 94 HTVVETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeeccCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 223456999999999999 89999999999999999776
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00042 Score=55.04 Aligned_cols=108 Identities=12% Similarity=0.254 Sum_probs=78.5
Q ss_pred eEEEEccCCe-EEEE----eCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 56 SAVQWTAVDE-IITS----SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 56 ~~~~~~~~~~-l~s~----~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
+-..|+|... |+.+ ...|.|.||- +++++.. -... +-.+++++|+| ..-.++.|-.-|.+.+|...
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr----~Vt~---P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR----DVTY---PVHATSLCWHP-EEFVLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc----cccc---ceehhhhccCh-HHHHHhhccccceeEEEecC
Confidence 3456887765 3333 3457888874 3444321 1111 22356799999 77788888889999999998
Q ss_pred CCCcceEEeccCCCcEEEEEecC-CcEEEEecCCCcEEEEEecC
Q psy2113 131 SPKVPLFDMLGHEDKVMCVNWSD-YRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 173 (183)
+.+. -.....|..++..+.|++ +..++++..=|.+.+|....
T Consensus 90 ~~e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 90 TTET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred Ccee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 7764 556678999999999995 49999999999999998763
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0021 Score=48.74 Aligned_cols=107 Identities=20% Similarity=0.359 Sum_probs=70.5
Q ss_pred eEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC----------C-CeE
Q psy2113 56 SAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF----------D-NSV 124 (183)
Q Consensus 56 ~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----------d-g~i 124 (183)
+-+.|+|-|..++.-.-.-|.+|--.+-.. .+.+ .|. .|.-+.||| .+.+|+|=+. + ..+
T Consensus 214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r------~~RF-~Hp-~Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQGIALWGGESFDR------IQRF-YHP-GVQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeEEecCCceEEEEEeccceeeecCccHHH------HHhc-cCC-CceeeecCC-ccceEEEecCCccccCcccCCCceE
Confidence 568899998866666666678896443222 2222 244 488899999 8889998542 2 479
Q ss_pred EEEeCCCCCcceEEecc--CCCcE-EEEEec-CCcEEEEecCCCcEEEEEecC
Q psy2113 125 KLWDLRSPKVPLFDMLG--HEDKV-MCVNWS-DYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 125 ~vwd~~~~~~~~~~~~~--~~~~v-~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 173 (183)
++||++++.. ...+.. ..-.+ .-..|+ +++++|.-.. ..|.||+..+
T Consensus 285 ~IWDI~tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtps 335 (698)
T KOG2314|consen 285 IIWDIATGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPS 335 (698)
T ss_pred EEEEccccch-hcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCc
Confidence 9999999975 444443 22222 335788 5578776655 5788887554
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.024 Score=42.77 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=69.1
Q ss_pred CeeEEEEccCCe--EEEEeC---CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEE-EEEeCC--CeEE
Q psy2113 54 AISAVQWTAVDE--IITSSW---DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF-VSASFD--NSVK 125 (183)
Q Consensus 54 ~v~~~~~~~~~~--l~s~~~---d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~d--g~i~ 125 (183)
......|+|++. ++..+. +..|+++|+.+++. ..+....+......|+| +++.+ ++.+.+ ..|.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-------~~lt~~~g~~~~~~~SP-DG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK-------EKIASSQGMLVVSDVSK-DGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE-------EEEecCCCcEEeeEECC-CCCEEEEEEccCCCcEEE
Confidence 677899999875 333332 45788999877653 33444556667788999 66544 444433 4788
Q ss_pred EEeCCCCCcceEEeccCCCcEEEEEecCC-cEE-EEecCCC--cEEEEEecCCCC
Q psy2113 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI-MSGGQDN--SVRVFKTKHQPK 176 (183)
Q Consensus 126 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l-~~~~~dg--~i~iwd~~~~~~ 176 (183)
++|+.++. ...+..+........|+|+ +.| ++....+ .|.+.|+.+++.
T Consensus 261 ~~dl~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~ 313 (419)
T PRK04043 261 LYDTNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSV 313 (419)
T ss_pred EEECCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 88987765 3334333333345579965 444 4444444 477777766543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.014 Score=41.57 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=89.8
Q ss_pred ceeceeEEEEEeecCcEEEEEE--eccC--------CCCcc-----cccccCccceEE--E--eccCCCeeEEEEccCCe
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN--IEVT--------SLPSF-----FQLILQKTPLIT--L--KGHKEAISAVQWTAVDE 65 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~-----~~~~~~~~~~~~--~--~~h~~~v~~~~~~~~~~ 65 (183)
.+||---.+.+.|+|..+++++ +... ++... +.+..+++.+.. + ..|.-+|..+++.++|.
T Consensus 96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence 4677777888999998888876 3221 11110 112334444444 4 34777899999988888
Q ss_pred EEEEeCC--------CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEE-EEEeCCCeEEEEeCCCCCcce
Q psy2113 66 IITSSWD--------HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF-VSASFDNSVKLWDLRSPKVPL 136 (183)
Q Consensus 66 l~s~~~d--------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~vwd~~~~~~~~ 136 (183)
.+.+... -.+-+++.... ......+......-.+.+-+|++++ ++..+ +|+-.-+.+.+||..+++. +
T Consensus 176 V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~-~ 252 (305)
T PF07433_consen 176 VAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRL-L 252 (305)
T ss_pred EEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCE-e
Confidence 6655332 12333332221 1000000011123356789999999 66554 6666778999999999874 3
Q ss_pred EEeccCCCcEEEEEecCCcEEEEecCCCcEEE
Q psy2113 137 FDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRV 168 (183)
Q Consensus 137 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i 168 (183)
... .-..+..++..++.++++.+. |.+..
T Consensus 253 ~~~--~l~D~cGva~~~~~f~~ssG~-G~~~~ 281 (305)
T PF07433_consen 253 GSV--PLPDACGVAPTDDGFLVSSGQ-GQLIR 281 (305)
T ss_pred ecc--ccCceeeeeecCCceEEeCCC-ccEEE
Confidence 222 234567777776666665544 55433
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00072 Score=54.82 Aligned_cols=100 Identities=18% Similarity=0.191 Sum_probs=71.2
Q ss_pred CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCC
Q psy2113 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHE 143 (183)
Q Consensus 64 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 143 (183)
..++.|+..|.+...|+...-. + ...-..-.++|++++|+. ++..++.|-.+|.|.+||+...+. ...+..|.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~-~----~~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ 172 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLG-P----LHQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHG 172 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccc-h----hhcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcc-eeeeeecC
Confidence 4578888889999998865321 0 122233467899999999 899999999999999999998775 66666565
Q ss_pred CcEEEEEe---c-CCcEEEEecCCCcEEEEEec
Q psy2113 144 DKVMCVNW---S-DYRYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 144 ~~v~~~~~---~-~~~~l~~~~~dg~i~iwd~~ 172 (183)
.+++.+-+ . .+..++++..-|. +|.+.
T Consensus 173 ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 173 APVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred CccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 55554443 3 3466788777776 55543
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0071 Score=36.31 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=47.4
Q ss_pred eEEEEEec---CCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEe
Q psy2113 102 VQSVRWSP---IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 102 v~~~~~~p---~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~ 171 (183)
|+++++.. ++.+.|+.|+.|..|++|+-... +... .-.+.|+.+.-.....++-+..+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---~~Ei-~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---VAEI-TETDKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE---EEEE-ecccceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 45555543 23468999999999999976532 3333 3456788888887788998889998877764
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.02 Score=40.85 Aligned_cols=155 Identities=14% Similarity=0.123 Sum_probs=91.1
Q ss_pred EEeecCcEEEEEE---------eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC-eEEEEe-------------
Q psy2113 14 IFMTVGALLTLTN---------IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD-EIITSS------------- 70 (183)
Q Consensus 14 ~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~------------- 70 (183)
+|+++|.++.+.. +.+|+. ....+.+.++..|.-.-..+.+.|++ .|+.+.
T Consensus 57 ~fs~dG~~LytTEnd~~~g~G~IgVyd~------~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~k 130 (305)
T PF07433_consen 57 VFSPDGRLLYTTENDYETGRGVIGVYDA------ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAK 130 (305)
T ss_pred EEcCCCCEEEEeccccCCCcEEEEEEEC------cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCcee
Confidence 4899999988865 333332 22456667777776666788888888 455542
Q ss_pred -----CCCeEEEEEcCCCCCccCceeEEEe--ecCCcceEEEEEecCCCCEEEEEeCCC-------eEEEEeCCCCCc--
Q psy2113 71 -----WDHTLKIWDAELGGMKKGAIVKSTF--SSHKEWVQSVRWSPIDPQLFVSASFDN-------SVKLWDLRSPKV-- 134 (183)
Q Consensus 71 -----~d~~v~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg-------~i~vwd~~~~~~-- 134 (183)
++..+.+-|..+++... ...+ ..|..++.-+++.+ ++..++..-..| .+-+++....-.
T Consensus 131 LNl~tM~psL~~ld~~sG~ll~----q~~Lp~~~~~lSiRHLa~~~-~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~ 205 (305)
T PF07433_consen 131 LNLDTMQPSLVYLDARSGALLE----QVELPPDLHQLSIRHLAVDG-DGTVAFAMQYQGDPGDAPPLVALHRRGGALRLL 205 (305)
T ss_pred cChhhcCCceEEEecCCCceee----eeecCccccccceeeEEecC-CCcEEEEEecCCCCCccCCeEEEEcCCCcceec
Confidence 12234444444444321 2223 33667788888888 665555544333 233333322110
Q ss_pred --ceEEeccCCCcEEEEEecCC-c-EEEEecCCCcEEEEEecCCCCCCC
Q psy2113 135 --PLFDMLGHEDKVMCVNWSDY-R-YIMSGGQDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 135 --~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~~~~ 179 (183)
+......-...+-+|+++++ . ..+|+-..+.+.+||..++.....
T Consensus 206 ~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~ 254 (305)
T PF07433_consen 206 PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGS 254 (305)
T ss_pred cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeec
Confidence 00111233467889999955 4 557777889999999988875543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.026 Score=40.61 Aligned_cols=163 Identities=11% Similarity=0.152 Sum_probs=95.7
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCccccccc--CccceEEEeccCCCeeEEEEccCCeE--EEEeCCCeEEEEEcCCCCC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLIL--QKTPLITLKGHKEAISAVQWTAVDEI--ITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~l--~s~~~d~~v~vwd~~~~~~ 85 (183)
+-...|.|+++++.+.++..-.+..+..... .......++ -...-+.|.|+|++++ +.+-.+++|.+|.......
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~-~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g 225 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVK-PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG 225 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccC-CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc
Confidence 4566789999999988855433333222211 111122222 2234578999999984 4667899999999887421
Q ss_pred c-cCceeEEEee---cCCcceEEEEEecCCCCEEEEEeC-CCeEEEEeCCCCCcce---EEeccCCCcEEEEEecCC-cE
Q psy2113 86 K-KGAIVKSTFS---SHKEWVQSVRWSPIDPQLFVSASF-DNSVKLWDLRSPKVPL---FDMLGHEDKVMCVNWSDY-RY 156 (183)
Q Consensus 86 ~-~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~ 156 (183)
. ........+. ........|..+| ++++|.++.+ ...|-++.+......+ .....+........++++ ++
T Consensus 226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~-dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 226 KFEELQTIDTLPEDFTGTNWAAAIHISP-DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred eEEEeeeeccCccccCCCCceeEEEECC-CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence 1 1001111111 1234577888999 8888877653 3378888776543212 222333344677888865 77
Q ss_pred EEEecCCC-cEEEEEecCC
Q psy2113 157 IMSGGQDN-SVRVFKTKHQ 174 (183)
Q Consensus 157 l~~~~~dg-~i~iwd~~~~ 174 (183)
|+++.+++ .|.+|.+...
T Consensus 305 Liaa~q~sd~i~vf~~d~~ 323 (346)
T COG2706 305 LIAANQKSDNITVFERDKE 323 (346)
T ss_pred EEEEccCCCcEEEEEEcCC
Confidence 77776654 5888876543
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.022 Score=45.21 Aligned_cols=112 Identities=18% Similarity=0.270 Sum_probs=75.5
Q ss_pred cCCCeeEEEEccC------CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeE
Q psy2113 51 HKEAISAVQWTAV------DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 124 (183)
Q Consensus 51 h~~~v~~~~~~~~------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 124 (183)
...++.+++++|+ +++++|+.-| +.++.-. ........ .+....++|.++.| .+++++-++.+ -|
T Consensus 111 f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~---wlgnk~~v-~l~~~eG~I~~i~W---~g~lIAWand~-Gv 181 (846)
T KOG2066|consen 111 FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN---WLGNKDSV-VLSEGEGPIHSIKW---RGNLIAWANDD-GV 181 (846)
T ss_pred cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh---hhcCccce-eeecCccceEEEEe---cCcEEEEecCC-Cc
Confidence 4568889999976 4599999888 7666522 11111111 34556789999999 56788888755 57
Q ss_pred EEEeCCCCCcceEEeccCCCc------EEEEEecCCcEEEEecCCCcEEEEEecC
Q psy2113 125 KLWDLRSPKVPLFDMLGHEDK------VMCVNWSDYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 125 ~vwd~~~~~~~~~~~~~~~~~------v~~~~~~~~~~l~~~~~dg~i~iwd~~~ 173 (183)
+|||+.+.+. +..++..... ...+.|.+...++.|..| +|+|..++.
T Consensus 182 ~vyd~~~~~~-l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d-~v~i~~I~~ 234 (846)
T KOG2066|consen 182 KVYDTPTRQR-LTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGD-SVKICSIKK 234 (846)
T ss_pred EEEeccccce-eeccCCCCCCCCcccCCCceEecCCCeEEEecCC-eEEEEEEec
Confidence 9999998775 3333322222 356788888888887665 788888883
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.037 Score=40.64 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=69.1
Q ss_pred CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEee-------cCCcceEEEEEecCCCCEEEEEe---------CCCeEEE
Q psy2113 63 VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFS-------SHKEWVQSVRWSPIDPQLFVSAS---------FDNSVKL 126 (183)
Q Consensus 63 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~~~~---------~dg~i~v 126 (183)
++..+-.+..|.|++-|+........ .....+. -..+...-++++|++.++++... ..+.|.+
T Consensus 205 dg~~~~vs~eG~V~~id~~~~~~~~~-~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V 283 (352)
T TIGR02658 205 SGRLVWPTYTGKIFQIDLSSGDAKFL-PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV 283 (352)
T ss_pred CCcEEEEecCCeEEEEecCCCcceec-ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence 56644444459999999755432211 1111111 12333445999994444444231 1258999
Q ss_pred EeCCCCCcceEEeccCCCcEEEEEecCC-c-EEEEec-CCCcEEEEEecCCCCCC
Q psy2113 127 WDLRSPKVPLFDMLGHEDKVMCVNWSDY-R-YIMSGG-QDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 127 wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~-~dg~i~iwd~~~~~~~~ 178 (183)
+|..+.+. +..+. -...+..++++++ + +|++.. .++.|.+.|..+.+...
T Consensus 284 iD~~t~kv-i~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~ 336 (352)
T TIGR02658 284 VDAKTGKR-LRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELS 336 (352)
T ss_pred EECCCCeE-EEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEe
Confidence 99999886 44333 2448899999965 5 666555 68889999998886554
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.02 Score=43.43 Aligned_cols=136 Identities=13% Similarity=0.094 Sum_probs=70.7
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEE-EcCCCCCccC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIW-DAELGGMKKG 88 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vw-d~~~~~~~~~ 88 (183)
.-++.++|.|+.+++.+-..|.+.. ....... ..+.-....|.+.+.+++-...++|.++ ++.....
T Consensus 35 p~~ls~npngr~v~V~g~geY~iyt------~~~~r~k---~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~--- 102 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGDGEYEIYT------ALAWRNK---AFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVV--- 102 (443)
T ss_dssp -SEEEE-TTSSEEEEEETTEEEEEE------TTTTEEE---EEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT---
T ss_pred CeeEEECCCCCEEEEEcCCEEEEEE------ccCCccc---ccCceeEEEEecCccEEEEECCCeEEEEEcCccccc---
Confidence 4578899999999997644333321 1111111 1234457889888889998889999996 3322110
Q ss_pred ceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEE
Q psy2113 89 AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVR 167 (183)
Q Consensus 89 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~ 167 (183)
..+.. +..+..+- + |.+|...+ ++.|.+||+.+++. +..+... +|..+.|+++ .+++-.+. ..+.
T Consensus 103 ----k~i~~-~~~~~~If--~--G~LL~~~~-~~~i~~yDw~~~~~-i~~i~v~--~vk~V~Ws~~g~~val~t~-~~i~ 168 (443)
T PF04053_consen 103 ----KSIKL-PFSVEKIF--G--GNLLGVKS-SDFICFYDWETGKL-IRRIDVS--AVKYVIWSDDGELVALVTK-DSIY 168 (443)
T ss_dssp ----------SS-EEEEE-----SSSEEEEE-TTEEEEE-TTT--E-EEEESS---E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred ----eEEcC-CcccceEE--c--CcEEEEEC-CCCEEEEEhhHcce-eeEEecC--CCcEEEEECCCCEEEEEeC-CeEE
Confidence 01111 11233332 2 55666555 45899999999875 5555433 4899999976 66666654 4666
Q ss_pred EEEe
Q psy2113 168 VFKT 171 (183)
Q Consensus 168 iwd~ 171 (183)
+++.
T Consensus 169 il~~ 172 (443)
T PF04053_consen 169 ILKY 172 (443)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0019 Score=43.62 Aligned_cols=106 Identities=12% Similarity=0.141 Sum_probs=64.0
Q ss_pred CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCC
Q psy2113 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHE 143 (183)
Q Consensus 64 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 143 (183)
..++.|+.+|.|++|....-... ...+..-..++-+.--.-.++.+..+++.||.|+.|++...+. +.....|.
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~-----~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~ 144 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAH-----SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHN 144 (238)
T ss_pred ceEEeecccceEEEecCCccchH-----HHhhhcccccceeccccccccceeEEeccCCceeeeccccCce-eeeecccc
Confidence 45899999999999987521110 0011111222333222222455889999999999999988775 44555555
Q ss_pred -CcEEEEEec-CCcEEEEe--cCCCcEEEEEecCCC
Q psy2113 144 -DKVMCVNWS-DYRYIMSG--GQDNSVRVFKTKHQP 175 (183)
Q Consensus 144 -~~v~~~~~~-~~~~l~~~--~~dg~i~iwd~~~~~ 175 (183)
.++...... .+..++.. +.|..++.|++..-.
T Consensus 145 ~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 145 FESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred CCCcceeEEecCCceEEeeccccchhhhhcchhhhh
Confidence 344443333 44666666 777778888776543
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.042 Score=39.86 Aligned_cols=114 Identities=16% Similarity=0.172 Sum_probs=71.6
Q ss_pred ccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCC-CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 50 GHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGG-MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 50 ~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
...++|++++-. ++.|+.+ .++.+.+|++...+ .. ..........+.++... +++++.|.....+.++.
T Consensus 86 ~~~g~V~ai~~~-~~~lv~~-~g~~l~v~~l~~~~~l~-----~~~~~~~~~~i~sl~~~---~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 86 EVKGPVTAICSF-NGRLVVA-VGNKLYVYDLDNSKTLL-----KKAFYDSPFYITSLSVF---KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EESS-EEEEEEE-TTEEEEE-ETTEEEEEEEETTSSEE-----EEEEE-BSSSEEEEEEE---TTEEEEEESSSSEEEEE
T ss_pred eecCcceEhhhh-CCEEEEe-ecCEEEEEEccCcccch-----hhheecceEEEEEEecc---ccEEEEEEcccCEEEEE
Confidence 357889998866 4554444 45899999998766 21 22222233466777664 45888888877777664
Q ss_pred CCC--CCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecC
Q psy2113 129 LRS--PKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 129 ~~~--~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 173 (183)
.+. .+............++++.+. +++.++.+..+|.+.++....
T Consensus 156 ~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 156 YDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 443 222111222334568888887 446999999999999998864
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0022 Score=32.26 Aligned_cols=31 Identities=23% Similarity=0.419 Sum_probs=28.0
Q ss_pred CCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 98 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
....|.+++|+| ...+++.+..+|.|.++.+
T Consensus 10 l~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 10 LPSRVSCMSWCP-TMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCCcEEEEEECC-CCCEEEEEECCCeEEEEEC
Confidence 345699999999 8889999999999999998
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0046 Score=45.82 Aligned_cols=81 Identities=21% Similarity=0.279 Sum_probs=61.7
Q ss_pred cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC-Ccc-------------eEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 97 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP-KVP-------------LFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 97 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~-~~~-------------~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
-|..+|.++.++| .+..+++....|.|.-|..+.. +.+ +..+........++.|++. ..+.+-+
T Consensus 142 lH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred cccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 4788999999999 8888999888899999988731 100 1122334456788999965 7888888
Q ss_pred CCCcEEEEEecCCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~~ 178 (183)
.|.+|++++.++++...
T Consensus 221 ~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 221 PDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred cccEEEEEEeccchhhh
Confidence 99999999999887543
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.038 Score=38.39 Aligned_cols=112 Identities=13% Similarity=0.090 Sum_probs=73.0
Q ss_pred eeEEEEc-cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEee--c-CCcceEEEEEecCCCCEEEEEeCC--------C
Q psy2113 55 ISAVQWT-AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFS--S-HKEWVQSVRWSPIDPQLFVSASFD--------N 122 (183)
Q Consensus 55 v~~~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--~-~~~~v~~~~~~p~~~~~l~~~~~d--------g 122 (183)
..++.+. +++.++.+...+... +|..+++... ..... . .....+.+++.| ++++.++.... |
T Consensus 42 ~~G~~~~~~~g~l~v~~~~~~~~-~d~~~g~~~~----~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g 115 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVADSGGIAV-VDPDTGKVTV----LADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPG 115 (246)
T ss_dssp EEEEEEECTTSEEEEEETTCEEE-EETTTTEEEE----EEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSE
T ss_pred CceEEEEccCCEEEEEEcCceEE-EecCCCcEEE----EeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccccccc
Confidence 6677887 788888887765544 4887764321 22221 1 345678999999 78888776644 5
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE-EEecCCCcEEEEEecCCC
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI-MSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l-~~~~~dg~i~iwd~~~~~ 175 (183)
.+..++.. ++ +......-...+.++|+++ +.| ++-+..+.|..+++....
T Consensus 116 ~v~~~~~~-~~--~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 116 SVYRIDPD-GK--VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG 167 (246)
T ss_dssp EEEEEETT-SE--EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred ceEEECCC-Ce--EEEEecCcccccceEECCcchheeecccccceeEEEeccccc
Confidence 57777776 33 3333334456799999966 545 567788889999987544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00015 Score=55.48 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=84.1
Q ss_pred CCCeeEEEEc-cCC-e-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe----CCCeE
Q psy2113 52 KEAISAVQWT-AVD-E-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS----FDNSV 124 (183)
Q Consensus 52 ~~~v~~~~~~-~~~-~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----~dg~i 124 (183)
...+.|+++. ..+ . ++.|..+|.|.+-..+...-.. .....++..+.++++|++-+.+.|+.|- .|..+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs----~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~ 131 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS----AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSL 131 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc----ceecccccccccccccccccHHHHHhhhhhhcccCCc
Confidence 4467788877 333 3 6788899999998887644321 2345678889999999997777777773 36689
Q ss_pred EEEeCCCCC-cce--EEec-cCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 125 KLWDLRSPK-VPL--FDML-GHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 125 ~vwd~~~~~-~~~--~~~~-~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
.+||+.+.- .|. -.+. +......+++|..+ +.+.+|...+.++++|+|..
T Consensus 132 ~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs 186 (783)
T KOG1008|consen 132 KIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQS 186 (783)
T ss_pred cceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhh
Confidence 999998761 111 1122 23455678889844 88889999999999999843
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.041 Score=37.79 Aligned_cols=106 Identities=16% Similarity=0.095 Sum_probs=66.1
Q ss_pred EccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEE-
Q psy2113 60 WTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFD- 138 (183)
Q Consensus 60 ~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~- 138 (183)
...++.+++++.++.++.||..+++. ...... ...+...... .+..++.+..++.+..+|.++++. .-.
T Consensus 33 ~~~~~~v~~~~~~~~l~~~d~~tG~~------~W~~~~-~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~-~W~~ 102 (238)
T PF13360_consen 33 VPDGGRVYVASGDGNLYALDAKTGKV------LWRFDL-PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKV-LWSI 102 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSEE------EEEEEC-SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCE-EEEE
T ss_pred EEeCCEEEEEcCCCEEEEEECCCCCE------EEEeec-cccccceeee--cccccccccceeeeEecccCCcce-eeee
Confidence 33667888889999999999988775 334332 2211111111 334566666788999999999986 433
Q ss_pred eccCCC-----cEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 139 MLGHED-----KVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 139 ~~~~~~-----~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
...... ......+. +..++.+..++.|..+|+++++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 103 YLTSSPPAGVRSSSSPAVD-GDRLYVGTSSGKLVALDPKTGKL 144 (238)
T ss_dssp EE-SSCTCSTB--SEEEEE-TTEEEEEETCSEEEEEETTTTEE
T ss_pred ccccccccccccccCceEe-cCEEEEEeccCcEEEEecCCCcE
Confidence 222211 11122222 56777777799999999888765
|
... |
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0019 Score=47.74 Aligned_cols=120 Identities=23% Similarity=0.167 Sum_probs=73.5
Q ss_pred ccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CCeEEEEe
Q psy2113 50 GHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DNSVKLWD 128 (183)
Q Consensus 50 ~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~vwd 128 (183)
-|.+.|+.+.......+.+++.||.++.|-...-... .....+..|-..+.+++.+- ++.++.|++. |..++++|
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGv---EfVKhFraHL~~I~sl~~S~-dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGV---EFVKHFRAHLGVILSLAVSY-DGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccce---eehhhhHHHHHHHHhhhccc-cceeEeeccCcccceeEEE
Confidence 3777888777666677999999999999975431110 01112334444444554444 4444555444 55555554
Q ss_pred CC----------------------------------------------CCCcc-eEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 129 LR----------------------------------------------SPKVP-LFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 129 ~~----------------------------------------------~~~~~-~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
+. ...++ .....-|..+|..+.+.+- ..+++.
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 44 33222 2233457778888888854 777888
Q ss_pred cCCCcEEEEEecC
Q psy2113 161 GQDNSVRVFKTKH 173 (183)
Q Consensus 161 ~~dg~i~iwd~~~ 173 (183)
...|-|-.|....
T Consensus 163 D~~gmVEyWs~e~ 175 (558)
T KOG0882|consen 163 DISGMVEYWSAEG 175 (558)
T ss_pred cccceeEeecCCC
Confidence 8888899998773
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0037 Score=31.44 Aligned_cols=29 Identities=28% Similarity=0.631 Sum_probs=26.6
Q ss_pred CCcEEEEEecCC-cEEEEecCCCcEEEEEe
Q psy2113 143 EDKVMCVNWSDY-RYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 143 ~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~ 171 (183)
...|..++|+|. ++++.++.+|.|.++.+
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl 40 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL 40 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC
Confidence 457899999988 99999999999999998
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0015 Score=52.35 Aligned_cols=84 Identities=13% Similarity=0.162 Sum_probs=66.7
Q ss_pred EEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcE-EEEecCCC-cEEE
Q psy2113 92 KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRY-IMSGGQDN-SVRV 168 (183)
Q Consensus 92 ~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~-l~~~~~dg-~i~i 168 (183)
...+..|....+|++|+- +.+.++.|+..|.|+++++.++.. .....+|.++|+-+.-+ ++.. |.+++... -..+
T Consensus 1094 w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred chhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchHHH
Confidence 445677888999999999 889999999999999999999986 67788999999999988 5544 44444444 5688
Q ss_pred EEecCCCCC
Q psy2113 169 FKTKHQPKS 177 (183)
Q Consensus 169 wd~~~~~~~ 177 (183)
|++..-..+
T Consensus 1172 W~~~s~~~~ 1180 (1516)
T KOG1832|consen 1172 WDASSTGGP 1180 (1516)
T ss_pred hccccccCc
Confidence 988764433
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.069 Score=37.43 Aligned_cols=112 Identities=14% Similarity=0.190 Sum_probs=72.1
Q ss_pred EEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceE
Q psy2113 58 VQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLF 137 (183)
Q Consensus 58 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 137 (183)
++.+++|++++.-.|..|.+-..+..-..-... ....+....+=..++|+| ++.+++.+...|+|+++|+.... +.
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~k-cqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~--lf 78 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGK-CQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE--LF 78 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEE-EecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce--eE
Confidence 445578888888889888887765432110000 111122233457899999 89999999999999999998643 22
Q ss_pred Eecc-------CCCcEEEEEecCC-------cEEEEecCCCcEEEEEecC
Q psy2113 138 DMLG-------HEDKVMCVNWSDY-------RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 138 ~~~~-------~~~~v~~~~~~~~-------~~l~~~~~dg~i~iwd~~~ 173 (183)
.+.. -...|..+.|.+- ..|++-..+|.++=|-+..
T Consensus 79 ~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~ 128 (282)
T PF15492_consen 79 VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSV 128 (282)
T ss_pred EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEc
Confidence 2221 2246677777631 2567777888888777643
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.12 Score=41.72 Aligned_cols=155 Identities=11% Similarity=0.055 Sum_probs=91.6
Q ss_pred EEEeecCcEEEEEE--eccCCCCcccccccCccceEEEeccCCCeeEEEEc-cC-CeEEEEeCCC-----eEEEEEcCCC
Q psy2113 13 VIFMTVGALLTLTN--IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWT-AV-DEIITSSWDH-----TLKIWDAELG 83 (183)
Q Consensus 13 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~-~~l~s~~~d~-----~v~vwd~~~~ 83 (183)
-.+++.+..++++. .+++.+ ....+.+..++.+...+-..-|. .+ +.|++.+.|+ .+++|+++..
T Consensus 29 sc~~s~~~~vvigt~~G~V~~L------n~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~ 102 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVIL------NSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKV 102 (933)
T ss_pred eEEcCCCceEEEeeccccEEEe------cccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEeccccc
Confidence 34677777777766 333322 22333446677777773333344 33 3477766654 5899999765
Q ss_pred CCccCceeE--EEeec-----CCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC--CCCc-ceEEeccCCCcEEEEEec-
Q psy2113 84 GMKKGAIVK--STFSS-----HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR--SPKV-PLFDMLGHEDKVMCVNWS- 152 (183)
Q Consensus 84 ~~~~~~~~~--~~~~~-----~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~--~~~~-~~~~~~~~~~~v~~~~~~- 152 (183)
......... +.+.. ...++.+++.+. +-..++.|-.+|.|..+.-. ..+. .........++|+.+.+.
T Consensus 103 ~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~ 181 (933)
T KOG2114|consen 103 DKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRS 181 (933)
T ss_pred CCCCCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEec
Confidence 332212222 22222 245688899998 67899999999999988432 1111 122333446799999998
Q ss_pred CCcE-EEEecCCCcEEEEEecCCC
Q psy2113 153 DYRY-IMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 153 ~~~~-l~~~~~dg~i~iwd~~~~~ 175 (183)
++.. ++++. -..|.+|.+....
T Consensus 182 d~~s~lFv~T-t~~V~~y~l~gr~ 204 (933)
T KOG2114|consen 182 DGKSVLFVAT-TEQVMLYSLSGRT 204 (933)
T ss_pred CCceeEEEEe-cceeEEEEecCCC
Confidence 4433 33333 3578888888444
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.067 Score=39.33 Aligned_cols=96 Identities=13% Similarity=0.035 Sum_probs=62.9
Q ss_pred CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEE-Ee---------CCCeEEEEeCCCCCcceEEeccC
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS-AS---------FDNSVKLWDLRSPKVPLFDMLGH 142 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~-~~---------~dg~i~vwd~~~~~~~~~~~~~~ 142 (183)
++|.+.|..+.+. ...+..-..+- .+ ++| ++..++. .+ .+..|.+||..+.+. +..+.-.
T Consensus 27 ~~v~ViD~~~~~v------~g~i~~G~~P~-~~-~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p 96 (352)
T TIGR02658 27 TQVYTIDGEAGRV------LGMTDGGFLPN-PV-VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELP 96 (352)
T ss_pred ceEEEEECCCCEE------EEEEEccCCCc-ee-ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccC
Confidence 8999999988664 33444332222 24 899 5555544 45 578999999999886 4444321
Q ss_pred C-------CcEEEEEecCC-cEEEEec-C-CCcEEEEEecCCCCCC
Q psy2113 143 E-------DKVMCVNWSDY-RYIMSGG-Q-DNSVRVFKTKHQPKSG 178 (183)
Q Consensus 143 ~-------~~v~~~~~~~~-~~l~~~~-~-dg~i~iwd~~~~~~~~ 178 (183)
. .....++++++ ++++... . +..|.+.|+.+++...
T Consensus 97 ~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ 142 (352)
T TIGR02658 97 EGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVR 142 (352)
T ss_pred CCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEE
Confidence 1 12346788865 6777655 3 7889999999876543
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.094 Score=39.69 Aligned_cols=154 Identities=16% Similarity=0.182 Sum_probs=78.0
Q ss_pred eeEEEEEeecCcEEEEEEeccCC-CCcccccccCc--cceEEEeccCCCeeEEEEccCCe--EEEEeCCCe--EEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTS-LPSFFQLILQK--TPLITLKGHKEAISAVQWTAVDE--IITSSWDHT--LKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~--v~vwd~~ 81 (183)
+...-.|+|++..++........ ...+..+.... ..+..+.+ .-..-+|+|+|+ +++...|+. |++.|+.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g---~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~ 270 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNG---NNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLD 270 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCC---ccCCccCCCCCCEEEEEECCCCCccEEEEcCC
Confidence 44455677777776665533322 11222222222 22333333 334568899877 445666665 5566666
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe-CCC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS-FDN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
..+. ..+....+.-..=.|+| +++.++-.+ ..| .|.+.|.+.... ..+......-..-.|+|+ .++
T Consensus 271 ~~~~-------~~Lt~~~gi~~~Ps~sp-dG~~ivf~Sdr~G~p~I~~~~~~g~~~--~riT~~~~~~~~p~~SpdG~~i 340 (425)
T COG0823 271 GKNL-------PRLTNGFGINTSPSWSP-DGSKIVFTSDRGGRPQIYLYDLEGSQV--TRLTFSGGGNSNPVWSPDGDKI 340 (425)
T ss_pred CCcc-------eecccCCccccCccCCC-CCCEEEEEeCCCCCcceEEECCCCCce--eEeeccCCCCcCccCCCCCCEE
Confidence 5542 12332333333567899 666655554 444 566667766553 333222222225667765 555
Q ss_pred EEecC-CCc--EEEEEecCCC
Q psy2113 158 MSGGQ-DNS--VRVFKTKHQP 175 (183)
Q Consensus 158 ~~~~~-dg~--i~iwd~~~~~ 175 (183)
+..+. +|. |.+.|+.++.
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred EEEeccCCceeeEEeccCCCC
Confidence 54443 455 5555554443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.012 Score=44.19 Aligned_cols=113 Identities=17% Similarity=0.298 Sum_probs=77.3
Q ss_pred EeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC-----
Q psy2113 48 LKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN----- 122 (183)
Q Consensus 48 ~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----- 122 (183)
+..-.-++..+.|+|.|.++....-..|.+|+-..... +..+. ...|..+.|+| .+.+|.+=+..+
T Consensus 28 ~~~~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~------l~~~~--~~~V~~~~fSP-~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 28 FESENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAK------LVRFR--HPDVKYLDFSP-NEKYLVTWSREPIIEPE 98 (561)
T ss_pred ccccCcchhheeecCcchheehhhccceEEccccchhh------eeeee--cCCceecccCc-ccceeeeeccCCccChh
Confidence 33355678899999999977777778899998765442 32332 34589999999 888988865444
Q ss_pred ----------eEEEEeCCCCCcceEEeccCCCc--EE-EEEec-CCcEEEEecCCCcEEEEEe
Q psy2113 123 ----------SVKLWDLRSPKVPLFDMLGHEDK--VM-CVNWS-DYRYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 123 ----------~i~vwd~~~~~~~~~~~~~~~~~--v~-~~~~~-~~~~l~~~~~dg~i~iwd~ 171 (183)
.+.+||+.++.. +..+.....+ .+ -+.|+ ++.+++-. ....++|+++
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~ 159 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI 159 (561)
T ss_pred hccCCccccCceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec
Confidence 489999999875 6666555544 34 56677 44444333 3346788876
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.079 Score=42.72 Aligned_cols=78 Identities=15% Similarity=0.152 Sum_probs=52.9
Q ss_pred CcceEEEEEecCCCCEEEEEeCCCeEEEEeCCC---------CCc--ceEEe--------ccCCCcEEEEEecCC----c
Q psy2113 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS---------PKV--PLFDM--------LGHEDKVMCVNWSDY----R 155 (183)
Q Consensus 99 ~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~---------~~~--~~~~~--------~~~~~~v~~~~~~~~----~ 155 (183)
.-.|..|..+| ++.+++..+..|.+.+.=.+. ++. .+... ..+...|..+.|+|. .
T Consensus 84 ~f~v~~i~~n~-~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNP-TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECC-CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34688999999 888888877766544433321 111 01111 134468899999964 7
Q ss_pred EEEEecCCCcEEEEEecCCCCC
Q psy2113 156 YIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 156 ~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+|+.-..|+.+|+||+.....+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCC
Confidence 8999999999999999765544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.056 Score=40.46 Aligned_cols=58 Identities=5% Similarity=0.019 Sum_probs=39.1
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEE-EEecCCcEEEEecCCCcEEEEEe
Q psy2113 112 PQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMC-VNWSDYRYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 112 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~dg~i~iwd~ 171 (183)
+..++.++.||.+...|..+++. +....-....+.. ... .++.|+.++.||.|..+++
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~-~~~~~~~~~~~~s~P~~-~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRF-VAQQKVDSSGFLSEPVV-ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCE-EEEEEcCCCcceeCCEE-ECCEEEEEeCCceEEEEeC
Confidence 34677888999999999999875 4443322222222 122 2468888999999988764
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.13 Score=35.99 Aligned_cols=101 Identities=10% Similarity=0.118 Sum_probs=66.1
Q ss_pred EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCc
Q psy2113 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK 145 (183)
Q Consensus 66 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 145 (183)
++.|+..+.+.--|..+++.. .. ..-...+-+-+.- -+++++.|+..|.+++.+..++.. ...+..- +.
T Consensus 26 v~igSHs~~~~avd~~sG~~~------We-~ilg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs~-~w~f~~~-~~ 94 (354)
T KOG4649|consen 26 VVIGSHSGIVIAVDPQSGNLI------WE-AILGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGSQ-IWNFVIL-ET 94 (354)
T ss_pred EEEecCCceEEEecCCCCcEE------ee-hhhCceeeeeeEE--ECCEEEEEEccCcEEEEEecchhh-eeeeeeh-hh
Confidence 667888888888888777642 11 1122233333322 245799999999999999999965 4443322 23
Q ss_pred EEEE-Eec-CCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 146 VMCV-NWS-DYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 146 v~~~-~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
|.+- ... ++..+..|+.|+..+..|.++....
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 3222 222 3489999999999999998876543
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.028 Score=41.99 Aligned_cols=74 Identities=18% Similarity=0.235 Sum_probs=49.6
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc------------------------------------------ceEE
Q psy2113 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV------------------------------------------PLFD 138 (183)
Q Consensus 101 ~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~------------------------------------------~~~~ 138 (183)
.|+.+.|.+ +..-++.|...|.|.+|.....+. |...
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 477788888 556777777788877774432110 3333
Q ss_pred eccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCC
Q psy2113 139 MLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 139 ~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+....++|++++.++=.+++.|..+|.+.|.|+|.+.
T Consensus 82 ~~~~~g~vtal~~S~iGFvaigy~~G~l~viD~RGPa 118 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIGFVAIGYESGSLVVIDLRGPA 118 (395)
T ss_dssp E---S-SEEEEEE-BTSEEEEEETTSEEEEEETTTTE
T ss_pred eeccCCcEeEEecCCCcEEEEEecCCcEEEEECCCCe
Confidence 4455789999999877999999999999999998764
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.018 Score=28.23 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=26.4
Q ss_pred cceEEEEEecCCC--CEEEEEeCCCeEEEEeCCC
Q psy2113 100 EWVQSVRWSPIDP--QLFVSASFDNSVKLWDLRS 131 (183)
Q Consensus 100 ~~v~~~~~~p~~~--~~l~~~~~dg~i~vwd~~~ 131 (183)
+.|.++.|+|..+ .+|+-.-..|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3578999998555 5888888889999999995
|
It contains a characteristic DLL sequence motif. |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.096 Score=39.21 Aligned_cols=102 Identities=11% Similarity=0.036 Sum_probs=62.3
Q ss_pred CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccC
Q psy2113 63 VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGH 142 (183)
Q Consensus 63 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 142 (183)
++.++.++.++.+...|..+++. ..... . .....+.. .+..++.++.+|.+..+|..+++. +-....-
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~------~W~~~-~-~~~~~~~~---~~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~ 323 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQI------VWKRE-Y-GSVNDFAV---DGGRIYLVDQNDRVYALDTRGGVE-LWSQSDL 323 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCE------EEeec-C-CCccCcEE---ECCEEEEEcCCCeEEEEECCCCcE-EEccccc
Confidence 45677778889999999988764 22211 1 11112222 344677777899999999998864 2221111
Q ss_pred CC-cEEEEEecCCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 143 ED-KVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 143 ~~-~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
.. ...+.... +..++.++.||.|...|..+++..
T Consensus 324 ~~~~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG~~~ 358 (394)
T PRK11138 324 LHRLLTAPVLY-NGYLVVGDSEGYLHWINREDGRFV 358 (394)
T ss_pred CCCcccCCEEE-CCEEEEEeCCCEEEEEECCCCCEE
Confidence 11 11111122 467888899999999998887644
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.024 Score=45.77 Aligned_cols=70 Identities=14% Similarity=0.136 Sum_probs=52.4
Q ss_pred CCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 52 KEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 52 ~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
.....|++-..+|.+|.|+.+|.||+||--..+. ...+.+-..+|..|..+. +|+++++.+ +..+.+++.
T Consensus 577 ~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~A------KT~lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 577 KNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRA------KTALPGLGDPIIGIDVTA-DGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCceEEEecCCceEEEEeCCCcEEeecccchhh------hhcCCCCCCCeeEEEecC-CCcEEEEee-cceEEEEEE
Confidence 3457778777889999999999999999432211 224556788999999999 787776655 567777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.44 Score=38.68 Aligned_cols=86 Identities=19% Similarity=0.307 Sum_probs=53.0
Q ss_pred CCeeEEEEccCCeEEEEeCCCeEEEEEcCCC-C----C--ccCceeEEEe--------ecCCcceEEEEEecCC--CCEE
Q psy2113 53 EAISAVQWTAVDEIITSSWDHTLKIWDAELG-G----M--KKGAIVKSTF--------SSHKEWVQSVRWSPID--PQLF 115 (183)
Q Consensus 53 ~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~-~----~--~~~~~~~~~~--------~~~~~~v~~~~~~p~~--~~~l 115 (183)
-.|..|..+++|.+++-.....|.|-.+... . . .+..+..+.+ ..+...|..+.|+|.. +..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 4688889999988555444455555555321 0 0 0111111111 1345578999999953 4678
Q ss_pred EEEeCCCeEEEEeCCCCCcceEE
Q psy2113 116 VSASFDNSVKLWDLRSPKVPLFD 138 (183)
Q Consensus 116 ~~~~~dg~i~vwd~~~~~~~~~~ 138 (183)
+.-..|+.+++||+.....+...
T Consensus 165 ~vLtsdn~lR~y~~~~~~~p~~v 187 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQHPWQV 187 (717)
T ss_pred EEEecCCEEEEEecCCCCCCeEE
Confidence 88888999999999876554433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.19 Score=34.45 Aligned_cols=126 Identities=15% Similarity=0.048 Sum_probs=70.9
Q ss_pred ccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEe-ecCC---cceEEEEEecCCCCE
Q psy2113 39 ILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTF-SSHK---EWVQSVRWSPIDPQL 114 (183)
Q Consensus 39 ~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~~~---~~v~~~~~~p~~~~~ 114 (183)
..+++.+..... .+.+.......++.++.++.++.++.+|..+++. .... .... .......... .+..
T Consensus 53 ~~tG~~~W~~~~-~~~~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~------~W~~~~~~~~~~~~~~~~~~~~-~~~~ 124 (238)
T PF13360_consen 53 AKTGKVLWRFDL-PGPISGAPVVDGGRVYVGTSDGSLYALDAKTGKV------LWSIYLTSSPPAGVRSSSSPAV-DGDR 124 (238)
T ss_dssp TTTSEEEEEEEC-SSCGGSGEEEETTEEEEEETTSEEEEEETTTSCE------EEEEEE-SSCTCSTB--SEEEE-ETTE
T ss_pred CCCCCEEEEeec-cccccceeeecccccccccceeeeEecccCCcce------eeeeccccccccccccccCceE-ecCE
Confidence 345566655554 3332222233567777777888999999888875 3332 2111 1112222222 3567
Q ss_pred EEEEeCCCeEEEEeCCCCCcceEEeccCCCc-----------EEEEEecCCcEEEEecCCCc-EEEEEecCCC
Q psy2113 115 FVSASFDNSVKLWDLRSPKVPLFDMLGHEDK-----------VMCVNWSDYRYIMSGGQDNS-VRVFKTKHQP 175 (183)
Q Consensus 115 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-----------v~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~ 175 (183)
++.+..++.+..+|+++++. +-........ ...+.+..+ .++.++.++. +.+ |+++++
T Consensus 125 ~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~ 194 (238)
T PF13360_consen 125 LYVGTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGE 194 (238)
T ss_dssp EEEEETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTE
T ss_pred EEEEeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCC
Confidence 78888899999999999875 3333332211 122333333 6666666675 444 777765
|
... |
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.34 Score=40.80 Aligned_cols=147 Identities=11% Similarity=0.167 Sum_probs=78.8
Q ss_pred EEEEeecCcEEEEEE---------eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEE----eCCCeEEEE
Q psy2113 12 GVIFMTVGALLTLTN---------IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITS----SWDHTLKIW 78 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~----~~d~~v~vw 78 (183)
++.|--+|.++++.. +++|+-. +..-..-....+-=.+++|-|.|.++++ +.|+.|.+|
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drE--------g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDRE--------GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEeccc--------chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEE
Confidence 477888998888854 3333221 1111111111223357899998874433 456678888
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEE---EeCCCeEEEEeCCCCCcce-EEeccCCCcEEEEEecCC
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS---ASFDNSVKLWDLRSPKVPL-FDMLGHEDKVMCVNWSDY 154 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~---~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~ 154 (183)
.-...... ... ..+......+..++|+. ++..|+. ......|++|-+.+-.-.. ..+.-..... +.|+|.
T Consensus 272 ErNGL~hg-~f~--l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~ 345 (1265)
T KOG1920|consen 272 ERNGLRHG-EFV--LPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPV 345 (1265)
T ss_pred ecCCcccc-ccc--cCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCC
Confidence 74332211 000 01122233489999999 7778877 4444569999887654211 1222222222 778764
Q ss_pred --cEEEEecCCCcEEEEEec
Q psy2113 155 --RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 155 --~~l~~~~~dg~i~iwd~~ 172 (183)
..+..-..+|...++|..
T Consensus 346 ~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 346 TEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred CceeEEEEecCCcEEEEEEE
Confidence 444444467776666543
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.28 Score=34.36 Aligned_cols=97 Identities=12% Similarity=0.049 Sum_probs=60.2
Q ss_pred cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEE-EEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec
Q psy2113 62 AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS-VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML 140 (183)
Q Consensus 62 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 140 (183)
-++.++.|...|.+++-+..++.. ...+... ..|.+ ....+ ++.++..|+.|+.++..|.++..+ +...+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~------~w~f~~~-~~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~c-Vyksk 132 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQ------IWNFVIL-ETVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGC-VYKSK 132 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhh------eeeeeeh-hhhccceEEcC-CCceEEEecCCCcEEEecccccce-EEecc
Confidence 345688899999999999988764 3333322 22322 23455 778999999999999999998776 54443
Q ss_pred cCCCcEEEEEecCC-cEEEEecCCCcEE
Q psy2113 141 GHEDKVMCVNWSDY-RYIMSGGQDNSVR 167 (183)
Q Consensus 141 ~~~~~v~~~~~~~~-~~l~~~~~dg~i~ 167 (183)
...+.-.+-+..++ ..|+.+...|.+.
T Consensus 133 cgG~~f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 133 CGGGTFVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cCCceeccceecCCCceEEEEeccceEE
Confidence 33222222233332 4444445555543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.079 Score=40.29 Aligned_cols=86 Identities=14% Similarity=0.211 Sum_probs=44.6
Q ss_pred CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC---------Cc
Q psy2113 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP---------KV 134 (183)
Q Consensus 64 ~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~---------~~ 134 (183)
|.++....++.|.+||..+++. +..+.. ..|..+.|++ ++++++..+. ..+.+++.... -.
T Consensus 117 G~LL~~~~~~~i~~yDw~~~~~------i~~i~v--~~vk~V~Ws~-~g~~val~t~-~~i~il~~~~~~~~~~~~~g~e 186 (443)
T PF04053_consen 117 GNLLGVKSSDFICFYDWETGKL------IRRIDV--SAVKYVIWSD-DGELVALVTK-DSIYILKYNLEAVAAIPEEGVE 186 (443)
T ss_dssp SSSEEEEETTEEEEE-TTT--E------EEEESS---E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-G
T ss_pred CcEEEEECCCCEEEEEhhHcce------eeEEec--CCCcEEEEEC-CCCEEEEEeC-CeEEEEEecchhcccccccCch
Confidence 6655555566899999998765 444442 2389999999 7888887764 46666655432 00
Q ss_pred -ceEEeccCCCcEEEEEecCCcEEEE
Q psy2113 135 -PLFDMLGHEDKVMCVNWSDYRYIMS 159 (183)
Q Consensus 135 -~~~~~~~~~~~v~~~~~~~~~~l~~ 159 (183)
...........|.+..|..+-++++
T Consensus 187 ~~f~~~~E~~~~IkSg~W~~d~fiYt 212 (443)
T PF04053_consen 187 DAFELIHEISERIKSGCWVEDCFIYT 212 (443)
T ss_dssp GGEEEEEEE-S--SEEEEETTEEEEE
T ss_pred hceEEEEEecceeEEEEEEcCEEEEE
Confidence 1222222256777777775433333
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.017 Score=47.43 Aligned_cols=66 Identities=20% Similarity=0.179 Sum_probs=51.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCC
Q psy2113 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
....++.|+..|.+...|....-.+...-..-.++|++++|+ ++..++.|-.+|.|.+||+..++.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~ 164 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI 164 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc
Confidence 445788888889999999887544344444456799999999 558889999999999999987654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.66 Score=36.95 Aligned_cols=118 Identities=21% Similarity=0.394 Sum_probs=73.0
Q ss_pred EEeccCCCeeEEEEccCCeEEEEe-CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEe--cCCCCEEEEEeCCCe
Q psy2113 47 TLKGHKEAISAVQWTAVDEIITSS-WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWS--PIDPQLFVSASFDNS 123 (183)
Q Consensus 47 ~~~~h~~~v~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~l~~~~~dg~ 123 (183)
++........-+.-+.-++++... ....+.|||.+...... ...+ ...+.|..+.|. | +++.+++.+....
T Consensus 24 ~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~----~~~f-~~~~~I~dLDWtst~-d~qsiLaVGf~~~ 97 (631)
T PF12234_consen 24 TFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEY----EESF-SEDDPIRDLDWTSTP-DGQSILAVGFPHH 97 (631)
T ss_pred EEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEE----eeee-cCCCceeeceeeecC-CCCEEEEEEcCcE
Confidence 333333444445545556655444 44679999998766321 2222 457789999985 5 6778888888999
Q ss_pred EEEEeCC-----CCC---cceE--EeccCC-CcEEEEEecCCcEEEEecCCCcEEEEEe
Q psy2113 124 VKLWDLR-----SPK---VPLF--DMLGHE-DKVMCVNWSDYRYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 124 i~vwd~~-----~~~---~~~~--~~~~~~-~~v~~~~~~~~~~l~~~~~dg~i~iwd~ 171 (183)
|.++--. ... .++. .+..+. .+|.+..|.++..++.|+ +.++.|+|-
T Consensus 98 v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s-GNqlfv~dk 155 (631)
T PF12234_consen 98 VLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS-GNQLFVFDK 155 (631)
T ss_pred EEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe-CCEEEEECC
Confidence 9988552 111 1121 223333 578899999887777766 357777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.33 Score=33.50 Aligned_cols=102 Identities=10% Similarity=0.209 Sum_probs=64.4
Q ss_pred eeEEEEccCCe--EEEEeCCCeEEEEE--cCCCCCccCceeEEEeec---CCc-ceEEEEEecCCCCEEEEEeCCCeEEE
Q psy2113 55 ISAVQWTAVDE--IITSSWDHTLKIWD--AELGGMKKGAIVKSTFSS---HKE-WVQSVRWSPIDPQLFVSASFDNSVKL 126 (183)
Q Consensus 55 v~~~~~~~~~~--l~s~~~d~~v~vwd--~~~~~~~~~~~~~~~~~~---~~~-~v~~~~~~p~~~~~l~~~~~dg~i~v 126 (183)
-+.++|..+.+ .++-+.+-+|.-|| ..++.......+. .++. ... ..-.++..- ++++.+++-..++|..
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~-dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~ 237 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIF-DLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQK 237 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeE-EeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEE
Confidence 45778885544 56778888888888 4444433221111 1111 111 112333444 7888888888899999
Q ss_pred EeCCCCCcceEEeccCCCcEEEEEec-CC-cEEEE
Q psy2113 127 WDLRSPKVPLFDMLGHEDKVMCVNWS-DY-RYIMS 159 (183)
Q Consensus 127 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~ 159 (183)
.|+.+++. +..+.-....+++++|- ++ ..+++
T Consensus 238 ~dp~tGK~-L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 238 VDPTTGKI-LLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred ECCCCCcE-EEEEEcCCCceEEEEecCCCccEEEE
Confidence 99999987 55666568899999998 54 44443
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.11 Score=35.63 Aligned_cols=63 Identities=6% Similarity=0.134 Sum_probs=42.0
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcceEE------ec-------cCCCcEEEEEecCCcEEEEecCCCcEEEEEecC
Q psy2113 111 DPQLFVSASFDNSVKLWDLRSPKVPLFD------ML-------GHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~------~~-------~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~ 173 (183)
.+.++++.+.+|.+++||+.+.+..... +. .....|..+...+++..+..-.+|....|+..-
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 5678888899999999999987642111 11 244677777777543333344567888887543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.79 Score=37.36 Aligned_cols=120 Identities=12% Similarity=0.147 Sum_probs=74.7
Q ss_pred CCCeeEEEEccC-CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 52 KEAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 52 ~~~v~~~~~~~~-~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
..++.+++.+.+ ..++.|-.+|.|..+.-.-..... . -.........+|+.+.+.- ++..++-...-..|.+|.+.
T Consensus 125 ~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg-s-r~~~~~~~~~pITgL~~~~-d~~s~lFv~Tt~~V~~y~l~ 201 (933)
T KOG2114|consen 125 PSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG-S-RQDYSHRGKEPITGLALRS-DGKSVLFVATTEQVMLYSLS 201 (933)
T ss_pred CCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc-c-ceeeeccCCCCceeeEEec-CCceeEEEEecceeEEEEec
Confidence 346788888855 447888899999887532111100 0 0112233567899999987 44442222334678999888
Q ss_pred CCCcceEEeccCCCcEEEEEecCCcE-EEEecCCCcEEEEEecCCC
Q psy2113 131 SPKVPLFDMLGHEDKVMCVNWSDYRY-IMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~ 175 (183)
...+....+..|...++|..+++... +++++ +..+.+||....+
T Consensus 202 gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 202 GRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred CCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 54422444778888999999997633 54443 3468888876443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.71 Score=36.62 Aligned_cols=107 Identities=10% Similarity=0.062 Sum_probs=65.9
Q ss_pred cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCE-EEEEeCCCeEEEEeCCCCCc------
Q psy2113 62 AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQL-FVSASFDNSVKLWDLRSPKV------ 134 (183)
Q Consensus 62 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l~~~~~dg~i~vwd~~~~~~------ 134 (183)
++|+...- .+++|.+.|.++.... ... ...+-.-....+.+.++| ++.+ ++++..+..+.|.|+.+.+.
T Consensus 286 kdGK~~~V-~gn~V~VID~~t~~~~-~~~-v~~yIPVGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 286 KAGKFKTI-GGSKVPVVDGRKAANA-GSA-LTRYVPVPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hCCCEEEE-CCCEEEEEECCccccC-Ccc-eEEEEECCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 34543322 3678999998861000 000 222333566789999999 6655 55556689999999987542
Q ss_pred -----ceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecC
Q psy2113 135 -----PLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 135 -----~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 173 (183)
.+....- .......+|.+. ....+--.|.+|..||+..
T Consensus 362 ~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 1111111 223456778744 6666777799999999886
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=95.67 E-value=1.2 Score=37.88 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=51.6
Q ss_pred CCCeeEEEEcc-CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 52 KEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 52 ~~~v~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
.+.|.++.|.- .+.++.+...|.|.+-|..+... .....-...|.+++|+| ++..++..+.++++.+-+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-------eivg~vd~GI~aaswS~-Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL-------EIVGNVDNGISAASWSP-DEELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccce-------eeeeeccCceEEEeecC-CCcEEEEEeCCcEEEEEe
Confidence 35789999984 45688888889998888776542 23344567899999999 888888887777776653
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.06 Score=41.29 Aligned_cols=113 Identities=16% Similarity=0.312 Sum_probs=66.4
Q ss_pred eeEEEEEeecCcEEEEEE-eccCCCCccc---ccccCccceEEEeccCCCeeEEEEccCCeEE-E---EeCCCeEEEEEc
Q psy2113 9 LTLGVIFMTVGALLTLTN-IEVTSLPSFF---QLILQKTPLITLKGHKEAISAVQWTAVDEII-T---SSWDHTLKIWDA 80 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~-s---~~~d~~v~vwd~ 80 (183)
....++|-|.|..+++-. ...-.-..++ ......+.+..+.. ...+.+-|+|.|+++ . +|..|.+.++|.
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEec
Confidence 356778888887766533 1111111111 12233444555433 456889999998833 2 356889999998
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC------eEEEEeCC
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN------SVKLWDLR 130 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg------~i~vwd~~ 130 (183)
....... .....| ...+.+-|.| .|++++|++.-. --++|+.+
T Consensus 525 ~~a~~k~-----~~~~eh-~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfq 573 (698)
T KOG2314|consen 525 DYADLKD-----TASPEH-FAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQ 573 (698)
T ss_pred chhhhhh-----ccCccc-cccccceECC-CCCEEEEeeehhhhccccceEEEEee
Confidence 7533311 111123 3467899999 999999997633 34555554
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.76 Score=37.06 Aligned_cols=116 Identities=10% Similarity=0.056 Sum_probs=72.7
Q ss_pred CeeEEEEcc---CCeEEEEeCCCeEEEEEcCC-------C---CC----ccCceeEEEeecCCcceEEEEEe--cCCCCE
Q psy2113 54 AISAVQWTA---VDEIITSSWDHTLKIWDAEL-------G---GM----KKGAIVKSTFSSHKEWVQSVRWS--PIDPQL 114 (183)
Q Consensus 54 ~v~~~~~~~---~~~l~s~~~d~~v~vwd~~~-------~---~~----~~~~~~~~~~~~~~~~v~~~~~~--p~~~~~ 114 (183)
.|+-|.... ...|+.|..||.|.+|..+. . .. .....+...+. ....++.++++ . ..++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~-~~rl 179 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYK-KSRL 179 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecC-cceE
Confidence 466665552 23388999999999997632 0 00 00111111222 34578999998 6 6778
Q ss_pred EEEEeCCCeEEEEeCCC--CCcceEEeccCCCcEEEEEecCC----c---EEEEecCCCcEEEEEe
Q psy2113 115 FVSASFDNSVKLWDLRS--PKVPLFDMLGHEDKVMCVNWSDY----R---YIMSGGQDNSVRVFKT 171 (183)
Q Consensus 115 l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~~~v~~~~~~~~----~---~l~~~~~dg~i~iwd~ 171 (183)
||.++....|.||-... .+.....-..+...|-+|.|.++ . .+++++-.|.+.+|++
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888777775543 22211112235667888888732 2 7788999999999888
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.73 Score=34.90 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=45.9
Q ss_pred EEEEeecCcEEEEEEec--cCC----CCc-ccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcC
Q psy2113 12 GVIFMTVGALLTLTNIE--VTS----LPS-FFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAE 81 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~~~--~~~----~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~ 81 (183)
-++.+|.|..+|+..-. ... .+. .......++++..+.-..+.|.++.|..+..|+.-..||.++++|+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCCCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 45667777776665411 110 111 22233455666666555588999999988889999999999999984
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.25 Score=41.42 Aligned_cols=128 Identities=14% Similarity=0.154 Sum_probs=80.0
Q ss_pred EEEeccCC-CeeEEEEccCCe---EEEEeCCCeEEEEEcCCCCCccC--cee---EEEeecCCcceEEEEEecCCCCEEE
Q psy2113 46 ITLKGHKE-AISAVQWTAVDE---IITSSWDHTLKIWDAELGGMKKG--AIV---KSTFSSHKEWVQSVRWSPIDPQLFV 116 (183)
Q Consensus 46 ~~~~~h~~-~v~~~~~~~~~~---l~s~~~d~~v~vwd~~~~~~~~~--~~~---~~~~~~~~~~v~~~~~~p~~~~~l~ 116 (183)
..+.-|.. +|..+...++.. ++..+.+..|..||++.-..... ..+ ............++.|+|.-....+
T Consensus 93 ~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~a 172 (1405)
T KOG3630|consen 93 LTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSA 172 (1405)
T ss_pred cceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhh
Confidence 44444443 444555455544 33444566899999875332110 000 1111223445678899995566778
Q ss_pred EEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 117 SASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
....|+.|++..+......+.. ......+++++|+|. ..++.|-..|++..|...-.
T Consensus 173 v~l~dlsl~V~~~~~~~~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le 230 (1405)
T KOG3630|consen 173 VDLSDLSLRVKSTKQLAQNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE 230 (1405)
T ss_pred hhccccchhhhhhhhhhhhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccc
Confidence 8888999999877654432222 234567899999965 89999999999998876554
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.67 Score=33.47 Aligned_cols=109 Identities=15% Similarity=0.217 Sum_probs=54.3
Q ss_pred CCCeeEEEEccCCeEEEEeCCCeEE-EEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 52 KEAISAVQWTAVDEIITSSWDHTLK-IWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 52 ~~~v~~~~~~~~~~l~s~~~d~~v~-vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
.+.+..+.-++++.+++.+..|.+. -||.-.... ...-+.-...|..+.|.| ++.+.+.+ ..|.|++=+..
T Consensus 144 ~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w------~~~~r~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~ 215 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW------QPHNRNSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDP 215 (302)
T ss_dssp ---EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-------EEEE--SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-T
T ss_pred cceeEeEEECCCCcEEEEECcccEEEEecCCCccc------eEEccCccceehhceecC-CCCEEEEe-CCcEEEEccCC
Confidence 4567777777888877777777665 566433222 112223567899999999 66665544 78888887722
Q ss_pred C-CC---cceEEeccCCCcEEEEEecCCcEEEEecCCCcEEE
Q psy2113 131 S-PK---VPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRV 168 (183)
Q Consensus 131 ~-~~---~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i 168 (183)
. .. .+........-.+..++|.++..+.+++..|.+..
T Consensus 216 ~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~ 257 (302)
T PF14870_consen 216 DDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV 257 (302)
T ss_dssp TEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE
T ss_pred CCccccccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE
Confidence 1 11 10111112223478999997655555555665543
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.69 Score=33.53 Aligned_cols=117 Identities=10% Similarity=0.115 Sum_probs=70.0
Q ss_pred ceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCC-CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC
Q psy2113 44 PLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELG-GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
.+..+..+-..-++|+|+|+++ +++=+..+.+..|++... ................+..-.++... ++++.+++..
T Consensus 154 ~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDa-dG~lw~~a~~ 232 (307)
T COG3386 154 VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDA-DGNLWVAAVW 232 (307)
T ss_pred EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeC-CCCEEEeccc
Confidence 3344444445567899999985 445566688888887631 11111111222223445555666666 7777765554
Q ss_pred CC-eEEEEeCCCCCcceEEeccCCCcEEEEEec-CC--cEEEEecCC
Q psy2113 121 DN-SVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DY--RYIMSGGQD 163 (183)
Q Consensus 121 dg-~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~--~~l~~~~~d 163 (183)
+| .|.+|+.. ++. .....-....+++++|- ++ .+++++...
T Consensus 233 ~g~~v~~~~pd-G~l-~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 233 GGGRVVRFNPD-GKL-LGEIKLPVKRPTNPAFGGPDLNTLYITSARS 277 (307)
T ss_pred CCceEEEECCC-CcE-EEEEECCCCCCccceEeCCCcCEEEEEecCC
Confidence 54 89999998 554 55555444778889997 43 455555444
|
|
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.63 Score=36.01 Aligned_cols=75 Identities=12% Similarity=0.071 Sum_probs=50.3
Q ss_pred cceEEEEEecCCCCEEEEEeCCCeEEEEeCC---------CCCcceEEec-----------cCCCcEEEEEecCC----c
Q psy2113 100 EWVQSVRWSPIDPQLFVSASFDNSVKLWDLR---------SPKVPLFDML-----------GHEDKVMCVNWSDY----R 155 (183)
Q Consensus 100 ~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~---------~~~~~~~~~~-----------~~~~~v~~~~~~~~----~ 155 (183)
-.|..+..++ .|..++-.+.+|.+.++-.+ +++. ....+ ...-.+..++|+|+ .
T Consensus 104 feV~~vl~s~-~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~-~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 104 FEVYQVLLSP-TGSHVALIGIKGLMVMELPKRWGKNSEFEDGKS-TVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEEecC-CCceEEEecCCeeEEEEchhhcCccceecCCCc-eEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 3577888899 78888888888877665422 2221 11111 11235677889964 5
Q ss_pred EEEEecCCCcEEEEEecCCCC
Q psy2113 156 YIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 156 ~l~~~~~dg~i~iwd~~~~~~ 176 (183)
++..-+.|..||+||+.....
T Consensus 182 hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 182 HLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred eEEEEecCcEEEEEecCCcch
Confidence 888888999999999887643
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.11 Score=25.43 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=25.1
Q ss_pred CcEEEEEecCC----cEEEEecCCCcEEEEEecCC
Q psy2113 144 DKVMCVNWSDY----RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 144 ~~v~~~~~~~~----~~l~~~~~dg~i~iwd~~~~ 174 (183)
+.+.++.|+|+ .+|+-.-..|.|.++|+++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46889999953 57787888899999999963
|
It contains a characteristic DLL sequence motif. |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.1 Score=35.58 Aligned_cols=106 Identities=15% Similarity=0.212 Sum_probs=57.3
Q ss_pred CCe-EEEEeCC------CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC-----eEEEEeCC
Q psy2113 63 VDE-IITSSWD------HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN-----SVKLWDLR 130 (183)
Q Consensus 63 ~~~-l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~vwd~~ 130 (183)
+++ ++.|+.+ ..+..||..++....... ............+ ++.+.+.|+.|+ .|..||.+
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~----M~~~R~~~g~a~~---~~~iYvvGG~~~~~~~~~VE~ydp~ 499 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP----MNTRRSGFGVAVL---NGKIYVVGGFDGTSALSSVERYDPE 499 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCC----cccccccceEEEE---CCEEEEECCccCCCccceEEEEcCC
Confidence 355 5666644 457788888766532111 1111111222222 567888888776 37889998
Q ss_pred CCCcceEEeccCCCcEEEEEecCCcEEEEecCCCc-----EEEEEecCCC
Q psy2113 131 SPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNS-----VRVFKTKHQP 175 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~ 175 (183)
+.+-..............++-..+...+.|+.||. |-.||..+.+
T Consensus 500 ~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 500 TNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred CCceeEcccCccccccccEEEECCEEEEEecccCccccceeEEcCCCCCc
Confidence 87642222122222223333345577788888774 6667766543
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.15 Score=34.99 Aligned_cols=69 Identities=10% Similarity=0.108 Sum_probs=47.1
Q ss_pred cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEE-ee-------cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q psy2113 62 AVDEIITSSWDHTLKIWDAELGGMKKGAIVKST-FS-------SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP 132 (183)
Q Consensus 62 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~-------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~ 132 (183)
.+..+++-+.+|.+++||+...+..-....+.. +. .....|..+.++. +|.-+++-+ +|..+.|+..-.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~~L~ 97 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSPDLG 97 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEeccccc
Confidence 345588889999999999988765322211111 11 3556788888887 777777665 578899988754
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.68 Score=35.21 Aligned_cols=114 Identities=8% Similarity=0.046 Sum_probs=70.5
Q ss_pred eeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc
Q psy2113 55 ISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV 134 (183)
Q Consensus 55 v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~ 134 (183)
-+.+-|...++.+-+...|.+.=|.....+... +...-....++|.++.|++ +...++.--.|..|.+++......
T Consensus 25 sngvFfDDaNkqlfavrSggatgvvvkgpndDV---piSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 25 SNGVFFDDANKQLFAVRSGGATGVVVKGPNDDV---PISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred ccceeeccCcceEEEEecCCeeEEEEeCCCCCC---CceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCch
Confidence 345566655665555566667777766544211 1222233567999999999 888999999999999998843332
Q ss_pred ---ceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecC
Q psy2113 135 ---PLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 135 ---~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~ 173 (183)
.....+.....|....|....-++-.+..| +-+|....
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSSTEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecCeeEEEEecCC-eEEEEEch
Confidence 123334445568888898664454444333 44444433
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.5 Score=34.95 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=44.3
Q ss_pred CCcceEEEEEecCCCCEEEEEeCCCeEEE---EeCCCCCcce---EEe-ccCCCcEEEEEecCCcEEEEecCCCcEEEEE
Q psy2113 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKL---WDLRSPKVPL---FDM-LGHEDKVMCVNWSDYRYIMSGGQDNSVRVFK 170 (183)
Q Consensus 98 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~v---wd~~~~~~~~---~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd 170 (183)
..+.|..+.|+| ++..++... ++.|.+ -....+...+ ..+ ..-...+.++.|.++..|+.+..++.-.+|.
T Consensus 446 ~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~ 523 (591)
T PRK13616 446 VPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWY 523 (591)
T ss_pred cCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEecCCEEEEEecCCCCceEE
Confidence 356799999999 777666554 577776 3333333111 112 2233446889999775566666666555665
Q ss_pred ecC
Q psy2113 171 TKH 173 (183)
Q Consensus 171 ~~~ 173 (183)
+.-
T Consensus 524 v~v 526 (591)
T PRK13616 524 VNL 526 (591)
T ss_pred Eec
Confidence 443
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.04 Score=44.77 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=80.1
Q ss_pred EEEeccCCCCcccccccCccceEEEeccCCCeeEEEEcc---CCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCC
Q psy2113 24 LTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA---VDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK 99 (183)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~ 99 (183)
++.+.+|++..........-.+.........+.-+.|+| +.- +..+-.++.+++....+... ..+.+|.
T Consensus 152 vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-------~l~rsHs 224 (1283)
T KOG1916|consen 152 VGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-------SLFRSHS 224 (1283)
T ss_pred hhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-------HHHHhcC
Confidence 344666766554333333334444444555667788884 222 44556678888777654321 1233454
Q ss_pred cceEEE-----------EEecCCCCEEEEEeCCCeEEEEeCC-----CCCcceEEeccCC-CcEEEEEecCC--------
Q psy2113 100 EWVQSV-----------RWSPIDPQLFVSASFDNSVKLWDLR-----SPKVPLFDMLGHE-DKVMCVNWSDY-------- 154 (183)
Q Consensus 100 ~~v~~~-----------~~~p~~~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~~-~~v~~~~~~~~-------- 154 (183)
..+..+ ..+| +|..+++.+.||.+++|.+. ..++ .+....|. .+-.|..+++.
T Consensus 225 ~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rc-lhewkphd~~p~vC~lc~~~~~~~v~i~ 302 (1283)
T KOG1916|consen 225 QRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGKIVHRC-LHEWKPHDKHPRVCWLCHKQEILVVSIG 302 (1283)
T ss_pred CCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeeccccHhh-hhccCCCCCCCceeeeeccccccCCccc
Confidence 443322 2678 88999999999998888664 2223 44555555 33333334321
Q ss_pred --cEEEEecC-CCcEEEEEecCCC
Q psy2113 155 --RYIMSGGQ-DNSVRVFKTKHQP 175 (183)
Q Consensus 155 --~~l~~~~~-dg~i~iwd~~~~~ 175 (183)
.++++++. +..+++|.-...+
T Consensus 303 ~w~~~Itttd~nre~k~w~~a~w~ 326 (1283)
T KOG1916|consen 303 KWVLRITTTDVNREEKFWAEAPWQ 326 (1283)
T ss_pred eeEEEEecccCCcceeEeeccchh
Confidence 34555554 4568888765443
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.31 Score=36.72 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=48.0
Q ss_pred CCeEEEEEcCCCCCccCceeEEEeec--CCcceEEEEEec--CCCCEEEEEeCCCeEEEEeC-CCCCc---ceEEecc--
Q psy2113 72 DHTLKIWDAELGGMKKGAIVKSTFSS--HKEWVQSVRWSP--IDPQLFVSASFDNSVKLWDL-RSPKV---PLFDMLG-- 141 (183)
Q Consensus 72 d~~v~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p--~~~~~l~~~~~dg~i~vwd~-~~~~~---~~~~~~~-- 141 (183)
..++.+||+...+. .+.+.- ....+..+.|.. ....-++.+.-..+|..|-- +.++- .+..+..
T Consensus 221 G~~l~vWD~~~r~~------~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~ 294 (461)
T PF05694_consen 221 GHSLHVWDWSTRKL------LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKK 294 (461)
T ss_dssp --EEEEEETTTTEE------EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE
T ss_pred cCeEEEEECCCCcE------eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcc
Confidence 46899999988775 333332 223466777754 22223444444555555533 33321 1112211
Q ss_pred ---------------CCCcEEEEEec-CCcEE-EEecCCCcEEEEEecCCCCCC
Q psy2113 142 ---------------HEDKVMCVNWS-DYRYI-MSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 142 ---------------~~~~v~~~~~~-~~~~l-~~~~~dg~i~iwd~~~~~~~~ 178 (183)
-..-|+.+..+ ++++| ++.-.+|.|+.||+.....++
T Consensus 295 v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk 348 (461)
T PF05694_consen 295 VEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK 348 (461)
T ss_dssp --SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred cCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence 13457888888 55666 556669999999999877654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.61 E-value=1.3 Score=35.44 Aligned_cols=53 Identities=19% Similarity=0.413 Sum_probs=39.1
Q ss_pred eCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec--CC-cEEEEecCCCcEEEEEe
Q psy2113 119 SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS--DY-RYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 119 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~~-~~l~~~~~dg~i~iwd~ 171 (183)
+....+.+||.+.+...........+.|.+++|. |+ +.+++.+....|.++--
T Consensus 48 ~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 48 SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 3345799999998764233333557899999998 44 88888888999988854
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.56 Score=39.51 Aligned_cols=96 Identities=11% Similarity=0.149 Sum_probs=63.5
Q ss_pred CeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q psy2113 54 AISAVQWTAV--DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS 131 (183)
Q Consensus 54 ~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 131 (183)
-..++.|+|. ...+.+..|+.|++..+...... . .-.......++++|+| .+..++.|-..|++.-|...-
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~-----v-~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l 229 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQN-----V-TSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL 229 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhh-----h-cccCcccceeeEEecc-ccceeeEecCCCeEEEeeccc
Confidence 3457788865 34677888999998876532221 1 1123456689999999 899999999999999887653
Q ss_pred CCcceEEecc----CCCcEEEEEecCC-cEEE
Q psy2113 132 PKVPLFDMLG----HEDKVMCVNWSDY-RYIM 158 (183)
Q Consensus 132 ~~~~~~~~~~----~~~~v~~~~~~~~-~~l~ 158 (183)
.. +..+.+ ....|.+|.|... .+++
T Consensus 230 ei--k~~ip~Pp~~e~yrvl~v~Wl~t~eflv 259 (1405)
T KOG3630|consen 230 EI--KSEIPEPPVEENYRVLSVTWLSTQEFLV 259 (1405)
T ss_pred ce--eecccCCCcCCCcceeEEEEecceeEEE
Confidence 31 111111 1357899999854 4444
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.27 Score=36.30 Aligned_cols=54 Identities=26% Similarity=0.486 Sum_probs=38.3
Q ss_pred CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC
Q psy2113 71 WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK 133 (183)
Q Consensus 71 ~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~ 133 (183)
..+.+.++|+.++.. ..+......+....|+| +++.++-.. ++.|.+++..++.
T Consensus 21 ~~~~y~i~d~~~~~~-------~~l~~~~~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 21 FKGDYYIYDIETGEI-------TPLTPPPPKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEEEEETTTTEE-------EESS-EETTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSE
T ss_pred cceeEEEEecCCCce-------EECcCCccccccceeec-CCCeeEEEe-cCceEEEECCCCC
Confidence 346789999988653 23332356788899999 788887775 6899999887664
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.24 E-value=1.4 Score=31.91 Aligned_cols=104 Identities=12% Similarity=0.194 Sum_probs=55.2
Q ss_pred eeEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEE-EEeCCC-eEEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEII-TSSWDH-TLKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~-s~~~d~-~v~vwd~~ 81 (183)
...+++|||+++.+...+ +..+.+...............+....+.--.++...+|.+. ++..+| .|.+|+..
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd 243 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD 243 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC
Confidence 457899999998887776 22222221101111112122222334445556666666655 444443 89999887
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCC-CCEEEEEe
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPID-PQLFVSAS 119 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~ 119 (183)
++. ...+......+++++|--.+ ..+++|..
T Consensus 244 -G~l------~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 244 -GKL------LGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred -CcE------EEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 443 44454444677888884323 33444444
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.5 Score=33.30 Aligned_cols=82 Identities=16% Similarity=0.101 Sum_probs=54.9
Q ss_pred EeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec--C-----------------C
Q psy2113 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS--D-----------------Y 154 (183)
Q Consensus 94 ~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~--~-----------------~ 154 (183)
.+......+.+++.+| .+++.++...=|.|.++|+.++.. +...++..+.=..-... + .
T Consensus 302 ~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~v-vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 302 GLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIV-VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChh-hhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 3445566789999999 788888887778999999998765 55555554332110000 0 0
Q ss_pred c-EEEEecCCCcEEEEEecCCCCC
Q psy2113 155 R-YIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 155 ~-~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
. +++-...-|.|-||.++++.+.
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv 403 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRV 403 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEE
Confidence 1 2344566788999999988764
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=93.71 E-value=0.45 Score=36.69 Aligned_cols=69 Identities=14% Similarity=0.172 Sum_probs=49.3
Q ss_pred CeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 54 AISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 54 ~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
...|.+-..+|.++.||.+|.|++||--..+. ...+.+...+|..+..+. +|..|++.+ +.++.+-++.
T Consensus 432 nFsc~aTT~sG~IvvgS~~GdIRLYdri~~~A------KTAlPgLG~~I~hVdvta-dGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 432 NFSCFATTESGYIVVGSLKGDIRLYDRIGRRA------KTALPGLGDAIKHVDVTA-DGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccceeeecCCceEEEeecCCcEEeehhhhhhh------hhcccccCCceeeEEeec-cCcEEEEec-ccEEEEEEEe
Confidence 34555555788999999999999999632222 234667788899999988 776665544 6677777664
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=93.68 E-value=2.4 Score=32.20 Aligned_cols=42 Identities=10% Similarity=0.014 Sum_probs=31.6
Q ss_pred ceEEEeccCCCeeEEEEccCCeEEEEe-CCCeEEEEEcCCCCC
Q psy2113 44 PLITLKGHKEAISAVQWTAVDEIITSS-WDHTLKIWDAELGGM 85 (183)
Q Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~ 85 (183)
....+......+.++..+|++.+++.+ .-|.|.++|+.+...
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~v 341 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIV 341 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChh
Confidence 344556666778999999998876654 458999999987654
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=0.94 Score=35.80 Aligned_cols=66 Identities=6% Similarity=0.039 Sum_probs=39.4
Q ss_pred CCCEEEEEeCC------CeEEEEeCCC-CCc-ceEEeccCCCcEEEEEecCCcEEEEecCCC--cEEEEEecCCCCC
Q psy2113 111 DPQLFVSASFD------NSVKLWDLRS-PKV-PLFDMLGHEDKVMCVNWSDYRYIMSGGQDN--SVRVFKTKHQPKS 177 (183)
Q Consensus 111 ~~~~l~~~~~d------g~i~vwd~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~ 177 (183)
++.+.+.|+.+ ..+..||+++ .+- .+..+.... ....++...+...+.|+.|| .+-.||+.+.+-.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r-~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL-SALHTILHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc-ccceeEEECCEEEEEeeecceeehhhcCccccccc
Confidence 55666777654 2467899987 442 122222222 22334444667888898888 6778888776543
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.19 Score=34.30 Aligned_cols=102 Identities=11% Similarity=-0.009 Sum_probs=50.9
Q ss_pred EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCc
Q psy2113 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK 145 (183)
Q Consensus 66 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 145 (183)
+..-+.++.|+-++++..+.. .+...-+. +..--+.....++.|+.+|.|.+|..............-...
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s-----~rse~~~~----e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~ 103 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKES-----CRSERFID----EGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEES 103 (238)
T ss_pred hccccCCcccccchhhhhhhh-----hhhhhhhh----cceeecccCceEEeecccceEEEecCCccchHHHhhhccccc
Confidence 445567778777777644321 11111111 111112245578899999999999886322111111111222
Q ss_pred EEEEEec--CCcEEEEecCCCcEEEEEecCCCC
Q psy2113 146 VMCVNWS--DYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 146 v~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+.++... .+.+..+++.||.|+.|++...+.
T Consensus 104 i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~ 136 (238)
T KOG2444|consen 104 IDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV 136 (238)
T ss_pred ceeccccccccceeEEeccCCceeeeccccCce
Confidence 2222222 124666666677777776655443
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.84 E-value=3.7 Score=32.01 Aligned_cols=127 Identities=14% Similarity=0.098 Sum_probs=72.5
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCe--------EEEEeCCCeEEEEEcCCCCCccCceeEEEeec--CCcceEEEEE
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDE--------IITSSWDHTLKIWDAELGGMKKGAIVKSTFSS--HKEWVQSVRW 107 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~--------l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 107 (183)
+...++.+.....|.+. -+.|.|... -+.|-.+..|.--|.+.... + ........ ......+..-
T Consensus 496 DIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gN-K--i~v~esKdY~tKn~Fss~~t 570 (776)
T COG5167 496 DIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGN-K--IKVVESKDYKTKNKFSSGMT 570 (776)
T ss_pred ecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCC-c--eeeeeehhcccccccccccc
Confidence 55667777777766665 456665421 23343444444445553321 0 00111111 1222333332
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecC
Q psy2113 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 108 ~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 173 (183)
. ...+++.++..|-|++||.-..+. ...+++-...|..+... ++.++++.|. ..+.+-|++-
T Consensus 571 T--esGyIa~as~kGDirLyDRig~rA-KtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~i 633 (776)
T COG5167 571 T--ESGYIAAASRKGDIRLYDRIGKRA-KTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVPI 633 (776)
T ss_pred c--cCceEEEecCCCceeeehhhcchh-hhcCcccccceeeeEeecCCcEEEEeec-ceEEEEeccc
Confidence 2 344899999999999999866554 56677888889999888 5565555443 4666666543
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=92.78 E-value=2 Score=32.56 Aligned_cols=48 Identities=17% Similarity=0.344 Sum_probs=36.3
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEec
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~ 172 (183)
.|.+|+..... +....-..+.+.++.|.++..|++...||.++++|+.
T Consensus 62 ~I~iys~sG~l--l~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSSSGKL--LSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECCCCCE--eEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCC
Confidence 47788776543 3333333378999999988888899999999999985
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=92.68 E-value=2.4 Score=31.16 Aligned_cols=54 Identities=9% Similarity=0.223 Sum_probs=33.9
Q ss_pred eeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeE-EEeecCCcceEEEEEec
Q psy2113 55 ISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVK-STFSSHKEWVQSVRWSP 109 (183)
Q Consensus 55 v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p 109 (183)
-..|+|.|++.++.+...|.|++++.. +......... ............++++|
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~~~-g~~~~~v~~~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVDKD-GSLKTPVADLPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEETT-TEECEEEEE-TTTBTSTTBSEEEEEE-T
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEeCC-CcCcceecccccccccccCCcccceecc
Confidence 468999999998888889999999932 2210100000 01123455689999999
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=92.66 E-value=2.6 Score=29.76 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=59.1
Q ss_pred CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEE----
Q psy2113 63 VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFD---- 138 (183)
Q Consensus 63 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---- 138 (183)
++.|+.|..+| +.+++...... .... .+...|..+...| +-+.++.-+ |+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~------~~~i-~~~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSK------PTRI-LKLSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCcc------ceeE-eecceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccc
Confidence 45688888888 88998832221 1111 2333499999998 666665554 699999999865431210
Q ss_pred ---------eccCCCcEEEEE---ecCCcEEEEecCCCcEEEEEecCC
Q psy2113 139 ---------MLGHEDKVMCVN---WSDYRYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 139 ---------~~~~~~~v~~~~---~~~~~~l~~~~~dg~i~iwd~~~~ 174 (183)
.......+...+ -..+...++......|.+|.....
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~ 124 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDP 124 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECC
Confidence 111222344444 112334444445568999888774
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=92.41 E-value=3.9 Score=31.24 Aligned_cols=118 Identities=14% Similarity=0.151 Sum_probs=64.9
Q ss_pred eEEEeccCCCeeEEEEccCCe-EE--EE-eCC-CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe
Q psy2113 45 LITLKGHKEAISAVQWTAVDE-II--TS-SWD-HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS 119 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~-l~--s~-~~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 119 (183)
...+..-...+..-+|+|++. ++ += ... ..+.++|+.++.... +....+.-..-+|+|++..++++..
T Consensus 185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-------i~~~~g~~~~P~fspDG~~l~f~~~ 257 (425)
T COG0823 185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-------ILNFNGNNGAPAFSPDGSKLAFSSS 257 (425)
T ss_pred eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-------eeccCCccCCccCCCCCCEEEEEEC
Confidence 334444445566778887765 22 21 122 468899988776422 2223344456789994444555666
Q ss_pred CCC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEe
Q psy2113 120 FDN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 120 ~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~ 171 (183)
.|| .|++.|+..... ..+....+.-..=.|+|+ ..+++.+..|.-.||-.
T Consensus 258 rdg~~~iy~~dl~~~~~--~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 258 RDGSPDIYLMDLDGKNL--PRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred CCCCccEEEEcCCCCcc--eecccCCccccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence 677 466777776653 223222222234567755 45556666776444433
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=92.34 E-value=3.1 Score=32.38 Aligned_cols=105 Identities=13% Similarity=0.202 Sum_probs=59.7
Q ss_pred CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCc------ceE--EEEEecCCCCEEEEEeCCCeEEEEeCCCCCc
Q psy2113 63 VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE------WVQ--SVRWSPIDPQLFVSASFDNSVKLWDLRSPKV 134 (183)
Q Consensus 63 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~------~v~--~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~ 134 (183)
++.++.++.++.++-.|.++++. ...+..... .+. .+... ++..++.++.++.|.-+|.++++.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~------~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKV------LWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChh------hceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCE
Confidence 57788888899999999988765 222221111 010 11111 225777788899999999999875
Q ss_pred ceEEeccCCCc-----EE-EEEecCCcEEEEec---------CCCcEEEEEecCCCCC
Q psy2113 135 PLFDMLGHEDK-----VM-CVNWSDYRYIMSGG---------QDNSVRVFKTKHQPKS 177 (183)
Q Consensus 135 ~~~~~~~~~~~-----v~-~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~ 177 (183)
+-........ +. ...+.+ ..++.++ .+|.+.-+|..+++..
T Consensus 133 -~W~~~~~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~ 188 (488)
T cd00216 133 -VWKFGNNDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLL 188 (488)
T ss_pred -eeeecCCCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence 3333222110 11 111112 3444443 3577888888777654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=91.95 E-value=1.3 Score=34.94 Aligned_cols=23 Identities=9% Similarity=0.317 Sum_probs=21.1
Q ss_pred CcEEEEecCCCcEEEEEecCCCC
Q psy2113 154 YRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 154 ~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
..++++.+.|+++|+||+.+++.
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCE
T ss_pred CCEEEEEeCCCeEEEEECCCCeE
Confidence 48999999999999999999876
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.68 Score=34.21 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=27.5
Q ss_pred EEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCC
Q psy2113 46 ITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 46 ~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~ 83 (183)
..+......+....|+|++..++--.++.|++++..++
T Consensus 36 ~~l~~~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~ 73 (353)
T PF00930_consen 36 TPLTPPPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATG 73 (353)
T ss_dssp EESS-EETTBSEEEE-SSSTEEEEEETTEEEEESSTTS
T ss_pred EECcCCccccccceeecCCCeeEEEecCceEEEECCCC
Confidence 33333367788999999998777667899999987655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=91.72 E-value=4 Score=32.49 Aligned_cols=112 Identities=15% Similarity=0.192 Sum_probs=61.6
Q ss_pred eeEEEEccCCeEEEEeCC------CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC-----e
Q psy2113 55 ISAVQWTAVDEIITSSWD------HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN-----S 123 (183)
Q Consensus 55 v~~~~~~~~~~l~s~~~d------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~ 123 (183)
-.+++..++..+++|+.| ..+..||.+.++... ...+...........+ ++.+.+.|+.|| .
T Consensus 325 ~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~----~a~M~~~R~~~~v~~l---~g~iYavGG~dg~~~l~s 397 (571)
T KOG4441|consen 325 RVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP----VAPMNTKRSDFGVAVL---DGKLYAVGGFDGEKSLNS 397 (571)
T ss_pred cccEEEECCEEEEEccccCCCcccceEEEecCCCCceec----cCCccCccccceeEEE---CCEEEEEecccccccccc
Confidence 345555555557888888 357788887766432 1122212222222222 677888888886 5
Q ss_pred EEEEeCCCCCcceEEeccCCCcE--EEEEecCCcEEEEecCCC------cEEEEEecCCC
Q psy2113 124 VKLWDLRSPKVPLFDMLGHEDKV--MCVNWSDYRYIMSGGQDN------SVRVFKTKHQP 175 (183)
Q Consensus 124 i~vwd~~~~~~~~~~~~~~~~~v--~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~ 175 (183)
+..||.++.+-. ......... ..++-..+...+.|+.++ .+..||+.+..
T Consensus 398 vE~YDp~~~~W~--~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 398 VECYDPVTNKWT--PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred EEEecCCCCccc--ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 778888876531 111111122 223333556677777554 36777777654
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=91.72 E-value=5.9 Score=31.79 Aligned_cols=79 Identities=10% Similarity=0.075 Sum_probs=53.8
Q ss_pred cCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCCC------ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 51 HKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGM------KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 51 h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
-......+.++|+++ ++++..+.++.|.|++..+. ...........- .......+|.+ +++...|-.-|.
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~ds 396 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDS 396 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecc
Confidence 344567899999987 55677799999999976432 111222222222 22334567888 677888888899
Q ss_pred eEEEEeCCC
Q psy2113 123 SVKLWDLRS 131 (183)
Q Consensus 123 ~i~vwd~~~ 131 (183)
.|..||+.+
T Consensus 397 qv~kwn~~~ 405 (635)
T PRK02888 397 QIVKWNIEA 405 (635)
T ss_pred eeEEEehHH
Confidence 999999875
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=91.09 E-value=4 Score=28.69 Aligned_cols=157 Identities=9% Similarity=0.105 Sum_probs=77.4
Q ss_pred eeEEEEEeecCc-EEEEEEeccCCCCcccccccCccceEEEecc-CCCeeEEEEccCCeEEEEe-CCCeEEEEEcCCCCC
Q psy2113 9 LTLGVIFMTVGA-LLTLTNIEVTSLPSFFQLILQKTPLITLKGH-KEAISAVQWTAVDEIITSS-WDHTLKIWDAELGGM 85 (183)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~ 85 (183)
...+++|+|+.. ++++.+ +.-.+.. ...+++.+..+.-. .+-...|++..++.++... .++.+.++++.....
T Consensus 23 e~SGLTy~pd~~tLfaV~d-~~~~i~e---ls~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~ 98 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD-EPGEIYE---LSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTT 98 (248)
T ss_dssp -EEEEEEETTTTEEEEEET-TTTEEEE---EETT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----T
T ss_pred CccccEEcCCCCeEEEEEC-CCCEEEE---EcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccc
Confidence 368999999765 555544 2111111 12244555555433 3457889998888876665 588999999854332
Q ss_pred ccCceeEEEe-----ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCC--C--CcceEEec------cCCCcEEEEE
Q psy2113 86 KKGAIVKSTF-----SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS--P--KVPLFDML------GHEDKVMCVN 150 (183)
Q Consensus 86 ~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~--~--~~~~~~~~------~~~~~v~~~~ 150 (183)
.........+ ..+...+-.++|+| ..+.++.+-......+|.++. . ........ .....+..+.
T Consensus 99 ~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 99 SLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp T--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred ccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 1111111111 12445689999999 555555555555555665543 1 11011111 1234567888
Q ss_pred ecCC--cEEEEecCCCcEEEEE
Q psy2113 151 WSDY--RYIMSGGQDNSVRVFK 170 (183)
Q Consensus 151 ~~~~--~~l~~~~~dg~i~iwd 170 (183)
++|. ++++.+..+..|..+|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d 199 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD 199 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE-
T ss_pred EcCCCCeEEEEECCCCeEEEEC
Confidence 8854 5666677777777777
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=91.01 E-value=2.6 Score=26.44 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=60.8
Q ss_pred eEEEEeCCCeEEEEEcCCCCCcc--CceeEEEeecCCcceEEEEEec---C-CCCEEEEEeCCCeEEEEeCCCCCcceEE
Q psy2113 65 EIITSSWDHTLKIWDAELGGMKK--GAIVKSTFSSHKEWVQSVRWSP---I-DPQLFVSASFDNSVKLWDLRSPKVPLFD 138 (183)
Q Consensus 65 ~l~s~~~d~~v~vwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~~p---~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 138 (183)
.|++++.-++|.|++........ ..... .+..-...|++++-.| . +...|+.|+ ...+..||+.+... + .
T Consensus 12 cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i-~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d-~-F 87 (136)
T PF14781_consen 12 CLACATTGGKVFIHNPHERGQRTGRQDSDI-SFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSD-L-F 87 (136)
T ss_pred eEEEEecCCEEEEECCCccccccccccCce-eEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCch-h-h
Confidence 48888899999999977543211 11112 2233566788876544 2 234566665 57899999998764 2 3
Q ss_pred eccCCCcEEEEEec-----CCcEEEEecCCCcEEEEEec
Q psy2113 139 MLGHEDKVMCVNWS-----DYRYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 139 ~~~~~~~v~~~~~~-----~~~~l~~~~~dg~i~iwd~~ 172 (183)
.+.-.+.|+++.+- +...++.| .+..|.=||..
T Consensus 88 yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~ 125 (136)
T PF14781_consen 88 YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE 125 (136)
T ss_pred hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence 34445677877774 23444444 34555555533
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=4.4 Score=32.15 Aligned_cols=50 Identities=10% Similarity=-0.063 Sum_probs=25.1
Q ss_pred eEEEEeCCCCCcc-eEEeccCCCcEEEEEecCCcEEEEecCCC------cEEEEEecC
Q psy2113 123 SVKLWDLRSPKVP-LFDMLGHEDKVMCVNWSDYRYIMSGGQDN------SVRVFKTKH 173 (183)
Q Consensus 123 ~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~l~~~~~dg------~i~iwd~~~ 173 (183)
.+..||+++.+-. +........ -.+++...+...+.|+.++ .+..||+++
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~-~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTI-RPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccc-cCcEEEECCEEEEEeCCCCCCccceeEEEecCCC
Confidence 4778888876421 111111111 1223334556666666542 366788886
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=90.79 E-value=2.1 Score=30.25 Aligned_cols=64 Identities=11% Similarity=0.130 Sum_probs=43.2
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
.++.++.|..+| +.+++......+.... +...|..+...+. +.+++-+ |+.++++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 567888888888 8999984433322222 2334999998876 5554443 5999999987765544
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.65 E-value=5.6 Score=29.65 Aligned_cols=148 Identities=11% Similarity=0.113 Sum_probs=70.4
Q ss_pred eEEEEEeecCcEEEEEEecc----------C-CCCcccccccCcc--ceEEEeccCCCeeEEEEccCCeEEEEeCCCeEE
Q psy2113 10 TLGVIFMTVGALLTLTNIEV----------T-SLPSFFQLILQKT--PLITLKGHKEAISAVQWTAVDEIITSSWDHTLK 76 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~ 76 (183)
..+++|.++|+++++..... - .+..+.+....++ ....+.........+++.+++ ++.+......+
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~~~i~~ 94 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATPPDILF 94 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCCCeEEE
Confidence 34688999999887753110 0 0111111111111 223333333445788888888 55555444333
Q ss_pred EEEcCCCCC-c-cCceeEEEeec----CCcceEEEEEecCCCCEEEEEeCC-------------------CeEEEEeCCC
Q psy2113 77 IWDAELGGM-K-KGAIVKSTFSS----HKEWVQSVRWSPIDPQLFVSASFD-------------------NSVKLWDLRS 131 (183)
Q Consensus 77 vwd~~~~~~-~-~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~~d-------------------g~i~vwd~~~ 131 (183)
+.|...... . ....+...+.. +......+.|.| ++.+.++-+.. |.|.-+|...
T Consensus 95 ~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg 173 (367)
T TIGR02604 95 LRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG 173 (367)
T ss_pred EeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC
Confidence 445432211 1 11111222222 133477899999 77666554421 3455555554
Q ss_pred CCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 132 PKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 132 ~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
.+ ...+...-.....++|++. .++++-.
T Consensus 174 ~~--~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 174 GK--LRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred Ce--EEEEecCcCCCccceECCCCCEEEEcc
Confidence 43 2222222234578888865 5555433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=90.47 E-value=3.6 Score=27.07 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=24.8
Q ss_pred ceEEEEEecCC-----CCEEEEEeCCCeEEEEeCCC
Q psy2113 101 WVQSVRWSPID-----PQLFVSASFDNSVKLWDLRS 131 (183)
Q Consensus 101 ~v~~~~~~p~~-----~~~l~~~~~dg~i~vwd~~~ 131 (183)
.+..++|+|.+ +.+|++...++.+.+|....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68899999932 34788888999999997764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=90.33 E-value=4.8 Score=28.31 Aligned_cols=120 Identities=6% Similarity=0.094 Sum_probs=67.3
Q ss_pred EEEeccCCCeeEEEEccC-CeE-EEEeCCCeEEEEEcCCCCCccCceeEEEeec-CCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 46 ITLKGHKEAISAVQWTAV-DEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSS-HKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 46 ~~~~~h~~~v~~~~~~~~-~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
..+.+-...+.+|+|+|+ +.| +.....+.|.-.+.. ++. +..+.- ..+..-.|++.. ++.++++--.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~v------lr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~ 86 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKV------LRRIPLDGFGDYEGITYLG-NGRYVLSEERDQ 86 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---E------EEEEE-SS-SSEEEEEE-S-TTEEEEEETTTT
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCE------EEEEeCCCCCCceeEEEEC-CCEEEEEEcCCC
Confidence 345566667999999986 554 556667788777754 333 222221 134577888876 666666555688
Q ss_pred eEEEEeCCCCCcc--eE---Ee-----ccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecC
Q psy2113 123 SVKLWDLRSPKVP--LF---DM-----LGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 123 ~i~vwd~~~~~~~--~~---~~-----~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 173 (183)
.+.++++...... .. .+ ..++.....++|++. +.|+.+-......+|.++.
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 9999988433211 11 11 123456889999965 6777777777777777664
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=90.32 E-value=3.7 Score=32.36 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=24.5
Q ss_pred eEEEEEec---CCCCEEEEEeCCCeEEEEeCCCCCc
Q psy2113 102 VQSVRWSP---IDPQLFVSASFDNSVKLWDLRSPKV 134 (183)
Q Consensus 102 v~~~~~~p---~~~~~l~~~~~dg~i~vwd~~~~~~ 134 (183)
+..++.++ ++..++++.+.|+.+++||+.++.+
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~ 252 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQC 252 (547)
T ss_dssp EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCE
T ss_pred cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeE
Confidence 44444443 2456899999999999999999886
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=90.22 E-value=6.1 Score=30.78 Aligned_cols=99 Identities=14% Similarity=0.149 Sum_probs=56.2
Q ss_pred EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEE------------------eCCCeEEEE
Q psy2113 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA------------------SFDNSVKLW 127 (183)
Q Consensus 66 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~------------------~~dg~i~vw 127 (183)
++.++.+|.+...|.++++. +...... ...++..| ..+..+ ..+|.+.-.
T Consensus 304 V~~g~~~G~l~ald~~tG~~------~W~~~~~---~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~Al 371 (488)
T cd00216 304 IVHAPKNGFFYVLDRTTGKL------ISARPEV---EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAAL 371 (488)
T ss_pred EEEECCCceEEEEECCCCcE------eeEeEee---ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEE
Confidence 66788899999999998875 2222110 01122222 122211 235677777
Q ss_pred eCCCCCcceEEeccC--C------CcE--EEEEecCCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 128 DLRSPKVPLFDMLGH--E------DKV--MCVNWSDYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 128 d~~~~~~~~~~~~~~--~------~~v--~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
|..+++. +-..... . .+. ..+.. .+..++.++.||.|+.+|.++++..-
T Consensus 372 D~~tG~~-~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 372 DPKTGKV-VWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred eCCCCcE-eeEeeCCccccccccCCcccCcceEe-cCCeEEEECCCCeEEEEECCCCceee
Confidence 8887764 2222111 0 111 11222 34688888999999999999887654
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=90.20 E-value=8.4 Score=30.92 Aligned_cols=103 Identities=12% Similarity=0.090 Sum_probs=52.9
Q ss_pred CCeeEEEEccCCe-EEEEe------CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC----
Q psy2113 53 EAISAVQWTAVDE-IITSS------WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD---- 121 (183)
Q Consensus 53 ~~v~~~~~~~~~~-l~s~~------~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---- 121 (183)
..+...+.+|++. ++... .|..-.||-...+... .....+ ...+.-.|+| ++..+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-----~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~ 421 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-----VQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVV 421 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-----eeeecC--CCCCCceECC-CCCceEEEecCcceE
Confidence 3567888888876 33222 2433344433222211 111222 2377888999 65555554322
Q ss_pred --------CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEE
Q psy2113 122 --------NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRV 168 (183)
Q Consensus 122 --------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~i 168 (183)
+.+.+.++..+.. .. .....|..+.|+++ ..++... +|+|.+
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~--~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V 472 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAV--AS--RVPGPISELQLSRDGVRAAMII-GGKVYL 472 (591)
T ss_pred EEeccCCCceEEEEeccCchh--hh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence 2333334443332 11 33457999999965 5555433 467766
|
|
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=89.55 E-value=7.5 Score=33.73 Aligned_cols=75 Identities=8% Similarity=0.206 Sum_probs=48.9
Q ss_pred CcceEEEEEecCCCCEEEEEeCCCeEE--EEeCCCCC----c---------------ceEEec-cCCCcEEEEEecCC-c
Q psy2113 99 KEWVQSVRWSPIDPQLFVSASFDNSVK--LWDLRSPK----V---------------PLFDML-GHEDKVMCVNWSDY-R 155 (183)
Q Consensus 99 ~~~v~~~~~~p~~~~~l~~~~~dg~i~--vwd~~~~~----~---------------~~~~~~-~~~~~v~~~~~~~~-~ 155 (183)
...|.|+.... +|+.+.+|- ||.++ +|....+- + .+..+. .+.++|..+...+. +
T Consensus 178 g~~V~~I~~t~-nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 178 GVSVNCITYTE-NGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred CceEEEEEecc-CCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 44577888555 788777775 55433 22222210 1 011222 55678999998865 8
Q ss_pred EEEEecCCCcEEEEEecCCC
Q psy2113 156 YIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 156 ~l~~~~~dg~i~iwd~~~~~ 175 (183)
.+.+-+..|+|.+||+....
T Consensus 256 IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred eeeeeccCceEEEEEccCCC
Confidence 89999999999999998743
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.33 E-value=8.4 Score=29.98 Aligned_cols=62 Identities=15% Similarity=0.195 Sum_probs=34.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCC-----CcEEEEEecCCC
Q psy2113 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQD-----NSVRVFKTKHQP 175 (183)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 175 (183)
++.+.+.| |.+.+||.++.+-....-..+...-.+++..++...+.|+.+ ..+..||+.+.+
T Consensus 407 ~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 407 GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred CCEEEEEC---CceEEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 55566666 356789988765311111111111223444466777777754 357788887654
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=89.00 E-value=12 Score=31.07 Aligned_cols=107 Identities=15% Similarity=0.125 Sum_probs=62.2
Q ss_pred CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCc--------ceEEEEEec---------------CCCCEEEEEe
Q psy2113 63 VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE--------WVQSVRWSP---------------IDPQLFVSAS 119 (183)
Q Consensus 63 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~--------~v~~~~~~p---------------~~~~~l~~~~ 119 (183)
++.++.++.++.|.-.|.++++. +..+..... ....+++.. .....++.++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~------lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T 267 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE------KWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT 267 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE------EEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec
Confidence 56788888888999899888775 333221110 011222211 0234777888
Q ss_pred CCCeEEEEeCCCCCcceEEeccCCCcEE-------------EEEecC---CcEEEEecC----------CCcEEEEEecC
Q psy2113 120 FDNSVKLWDLRSPKVPLFDMLGHEDKVM-------------CVNWSD---YRYIMSGGQ----------DNSVRVFKTKH 173 (183)
Q Consensus 120 ~dg~i~vwd~~~~~~~~~~~~~~~~~v~-------------~~~~~~---~~~l~~~~~----------dg~i~iwd~~~ 173 (183)
.|+.+.-.|.++++. +-.+. ..+.|. .+.-.| +..++.|+. +|.|+-+|.++
T Consensus 268 ~Dg~LiALDA~TGk~-~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 268 SDARLIALDADTGKL-CEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred CCCeEEEEECCCCCE-EEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC
Confidence 899999999999985 33321 111110 011111 345666643 68899999998
Q ss_pred CCCC
Q psy2113 174 QPKS 177 (183)
Q Consensus 174 ~~~~ 177 (183)
++..
T Consensus 346 Gkl~ 349 (764)
T TIGR03074 346 GALV 349 (764)
T ss_pred CcEe
Confidence 8754
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=88.76 E-value=0.1 Score=39.68 Aligned_cols=107 Identities=10% Similarity=0.200 Sum_probs=71.5
Q ss_pred CCeeEEEEccCC-e-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 53 EAISAVQWTAVD-E-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 53 ~~v~~~~~~~~~-~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
+....++|..++ . ++.+-..+.+++||+.+..... ...-..+.... +.|++ +...++.+...|.+.+++..
T Consensus 75 g~aldm~wDkegdvlavlAek~~piylwd~n~eytqq----LE~gg~~s~sl--l~wsK-g~~el~ig~~~gn~viynhg 147 (615)
T KOG2247|consen 75 GKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQ----LESGGTSSKSL--LAWSK-GTPELVIGNNAGNIVIYNHG 147 (615)
T ss_pred hhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHH----HhccCcchHHH--Hhhcc-CCccccccccccceEEEecc
Confidence 344567777443 3 5667788999999997643211 11111122222 67888 77778888889999999998
Q ss_pred CCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEE
Q psy2113 131 SPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVR 167 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~ 167 (183)
+.+. ....-.|...+++++|.+.++.+.++.|..+.
T Consensus 148 tsR~-iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~ 183 (615)
T KOG2247|consen 148 TSRR-IIVMGKHQRRGTQIAVTLEDYVILCDCDNTLS 183 (615)
T ss_pred chhh-hhhhcccccceeEEEecccceeeecCcHHHHH
Confidence 8775 33344488899999999877777777665543
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=88.51 E-value=7 Score=27.73 Aligned_cols=112 Identities=7% Similarity=0.059 Sum_probs=63.8
Q ss_pred eeEEEEccCCe-EEEEeCCC--eEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCC
Q psy2113 55 ISAVQWTAVDE-IITSSWDH--TLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS 131 (183)
Q Consensus 55 v~~~~~~~~~~-l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 131 (183)
..++.|.+++. +-+.+..| .++.+|+.+++... ...+. ..-.--.+... +..+..-.=.++...+||..+
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~----~~~l~-~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~t 119 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQ----SVPLP-PRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNT 119 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEE----EEE-T-TT--EEEEEEE--TTEEEEEESSSSEEEEEETTT
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEE----EEECC-ccccceeEEEE--CCEEEEEEecCCeEEEEcccc
Confidence 45788866676 45777766 68888988876421 11111 11122233333 334555556788999999998
Q ss_pred CCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 132 PKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 132 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
-+. +..+. ....-+.++. ++..|+.+.....|+++|+.+.+.
T Consensus 120 l~~-~~~~~-y~~EGWGLt~-dg~~Li~SDGS~~L~~~dP~~f~~ 161 (264)
T PF05096_consen 120 LKK-IGTFP-YPGEGWGLTS-DGKRLIMSDGSSRLYFLDPETFKE 161 (264)
T ss_dssp TEE-EEEEE--SSS--EEEE-CSSCEEEE-SSSEEEEE-TTT-SE
T ss_pred ceE-EEEEe-cCCcceEEEc-CCCEEEEECCccceEEECCcccce
Confidence 764 44443 3456677774 445555555567899999876543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=88.47 E-value=8.8 Score=30.20 Aligned_cols=64 Identities=16% Similarity=0.223 Sum_probs=32.8
Q ss_pred CCCEEEEEeCC--------CeEEEEeCCCCCcce-EEeccCCCcEEEEEecCCcEEEEecCC-----CcEEEEEecCCC
Q psy2113 111 DPQLFVSASFD--------NSVKLWDLRSPKVPL-FDMLGHEDKVMCVNWSDYRYIMSGGQD-----NSVRVFKTKHQP 175 (183)
Q Consensus 111 ~~~~l~~~~~d--------g~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~ 175 (183)
++.+++.|+.+ ..+..||+.+.+-.. ......... ..+...++..++.|+.+ ..+.+||+.+..
T Consensus 437 ~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 437 DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN-ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccccc-ceEEEECCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 45566666542 238889988765211 111111111 11222255666666654 468888877653
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.46 E-value=4.2 Score=27.79 Aligned_cols=47 Identities=19% Similarity=0.308 Sum_probs=32.1
Q ss_pred EEEEEeCCCeEEEEeCCCCCcc-eEEeccCCCcEEEEEec-CCcEEEEec
Q psy2113 114 LFVSASFDNSVKLWDLRSPKVP-LFDMLGHEDKVMCVNWS-DYRYIMSGG 161 (183)
Q Consensus 114 ~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~-~~~~l~~~~ 161 (183)
.+..+...+.|.+|++.+..++ ...+.. -+.|..+.++ .++++++-=
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE 78 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLE 78 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEE
Confidence 4433345678999999955443 334443 4889999999 568998853
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=88.43 E-value=6.9 Score=27.55 Aligned_cols=145 Identities=13% Similarity=0.080 Sum_probs=73.7
Q ss_pred eeEEEEEeecCcEEEEEE--eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEE-EeCCCeEEEEE-cCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN--IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIIT-SSWDHTLKIWD-AELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s-~~~d~~v~vwd-~~~~~ 84 (183)
...+.+.++++..++... -....+.. . ........+. ....+..-.|.+++.+.+ ...+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~---~-~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYV---G-PAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEE---E-cCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence 456788999998777654 11011100 0 1111111211 223677788888877544 44455666663 22222
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEe---CCCeEEEEeCCCCC--------cceEEeccCCCcEEEEEecC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS---FDNSVKLWDLRSPK--------VPLFDMLGHEDKVMCVNWSD 153 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~vwd~~~~~--------~~~~~~~~~~~~v~~~~~~~ 153 (183)
... . ......-...|..+.++| ++..++... .++.|.+--+.... .+..........+..++|.+
T Consensus 100 ~~~--~-~v~~~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 100 GEP--V-EVDWPGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred cee--E-EecccccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 211 0 011111112899999999 666555544 35677766543211 11222223356889999996
Q ss_pred C-cEEEEecC
Q psy2113 154 Y-RYIMSGGQ 162 (183)
Q Consensus 154 ~-~~l~~~~~ 162 (183)
+ .+++.+..
T Consensus 176 ~~~L~V~~~~ 185 (253)
T PF10647_consen 176 DSTLVVLGRS 185 (253)
T ss_pred CCEEEEEeCC
Confidence 6 44444433
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.29 E-value=4.2 Score=31.74 Aligned_cols=61 Identities=11% Similarity=0.173 Sum_probs=42.8
Q ss_pred cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 62 AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 62 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
.+|.++++|..|-|++||--..+. ...+.+....|..+.... +|..+++.+ ..++.+-|++
T Consensus 572 esGyIa~as~kGDirLyDRig~rA------KtalP~lG~aIk~idvta-~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRA------KTALPGLGDAIKHIDVTA-NGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchh------hhcCcccccceeeeEeec-CCcEEEEee-cceEEEEecc
Confidence 568899999999999999543332 224556667788888888 666555444 4677777775
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=88.12 E-value=7.4 Score=29.05 Aligned_cols=101 Identities=11% Similarity=0.074 Sum_probs=48.9
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccc-c--Cccc-eEEEec----cCCCeeEEEEccCCeEEEEeCC---------
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLI-L--QKTP-LITLKG----HKEAISAVQWTAVDEIITSSWD--------- 72 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~-~~~~~~----h~~~v~~~~~~~~~~l~s~~~d--------- 72 (183)
..++++.+++ ++++..-.++.+.....+. . ..+. +..+.. +....+.+.|.|+|.|..+-.+
T Consensus 74 p~Gi~~~~~G-lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~ 152 (367)
T TIGR02604 74 VTGLAVAVGG-VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRP 152 (367)
T ss_pred ccceeEecCC-EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccC
Confidence 3678888888 5554433333332111111 1 1111 122222 2344778999999885432221
Q ss_pred -----------CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe
Q psy2113 73 -----------HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS 119 (183)
Q Consensus 73 -----------~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 119 (183)
+.+..++....+ ...+...-.....++|+| +++++++-.
T Consensus 153 ~~~~~~~~~~~g~i~r~~pdg~~-------~e~~a~G~rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 153 GTSDESRQGLGGGLFRYNPDGGK-------LRVVAHGFQNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred CCccCcccccCceEEEEecCCCe-------EEEEecCcCCCccceECC-CCCEEEEcc
Confidence 233444443322 112222234457899999 787776644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=87.91 E-value=12 Score=29.63 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=32.3
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
|.+.-+|+.+++. .-.........-......+..++.+..||.++.+|.++++..-
T Consensus 441 g~l~AiD~~tGk~-~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 441 GSLIAWDPITGKI-VWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred eeEEEEeCCCCce-eeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeE
Confidence 3566667776653 2222211111111111234577788889999999999998654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=87.76 E-value=11 Score=29.12 Aligned_cols=101 Identities=8% Similarity=0.095 Sum_probs=61.9
Q ss_pred eccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEE
Q psy2113 49 KGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 127 (183)
Q Consensus 49 ~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vw 127 (183)
....++|.++.|+++++ ++.--.+.+|.+++....+... .....-+.....|....|.. + .-++-... .-+-+|
T Consensus 63 m~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l--~~~~~ck~k~~~IlGF~W~~-s-~e~A~i~~-~G~e~y 137 (657)
T KOG2377|consen 63 MDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL--EYTQECKTKNANILGFCWTS-S-TEIAFITD-QGIEFY 137 (657)
T ss_pred ecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh--HHHHHhccCcceeEEEEEec-C-eeEEEEec-CCeEEE
Confidence 34567999999999988 6667789999999985443211 00111222344588888876 3 34444443 334555
Q ss_pred eCCCCCcceEEeccCCCcEEEEEecCC
Q psy2113 128 DLRSPKVPLFDMLGHEDKVMCVNWSDY 154 (183)
Q Consensus 128 d~~~~~~~~~~~~~~~~~v~~~~~~~~ 154 (183)
.+...+..+.....|...|+=-.|.++
T Consensus 138 ~v~pekrslRlVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 138 QVLPEKRSLRLVKSHNLNVNWYMYCPE 164 (657)
T ss_pred EEchhhhhhhhhhhcccCccEEEEccc
Confidence 554443335556667777766667754
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=87.59 E-value=9.5 Score=28.18 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=33.3
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEe-cCCCcEEEEEecCCCCCC
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSG-GQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~~ 178 (183)
.|.++|+.+.+. +..+.. ..++.+|..+.+ .+|++. ..++.|.+||..+++...
T Consensus 270 eVWv~D~~t~kr-v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~ 326 (342)
T PF06433_consen 270 EVWVYDLKTHKR-VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVR 326 (342)
T ss_dssp EEEEEETTTTEE-EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEE
T ss_pred EEEEEECCCCeE-EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEe
Confidence 466667777665 444432 235668888833 567654 558999999999986543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.74 E-value=14 Score=29.14 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=32.6
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCC------CcEEEEEecCC
Q psy2113 111 DPQLFVSASFD-----NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQD------NSVRVFKTKHQ 174 (183)
Q Consensus 111 ~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~iwd~~~~ 174 (183)
++.+++.|+.+ ..+..||+.+.+-.......+...-.+++...+...+.|+.+ ..+..||+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 56677777754 357788887654211000011111122233355666666632 35788887754
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=86.69 E-value=0.32 Score=39.96 Aligned_cols=120 Identities=14% Similarity=0.164 Sum_probs=68.7
Q ss_pred EeccCCCeeEEEEccCC--eEEEEeCCCeEEEEEcCCCCCc-cCceeEEEeecCCcceEEEEEecC--CCCEEEEEeCCC
Q psy2113 48 LKGHKEAISAVQWTAVD--EIITSSWDHTLKIWDAELGGMK-KGAIVKSTFSSHKEWVQSVRWSPI--DPQLFVSASFDN 122 (183)
Q Consensus 48 ~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~--~~~~l~~~~~dg 122 (183)
+++..+.|-.+.|-..+ ++. -.-|.+.|||+.--+.. ...............+.-+.|.|. +..++..+-.++
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~ 205 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGG 205 (1283)
T ss_pred HhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCC
Confidence 35566777777775221 222 33467889998642111 111122223333444555666553 345666677788
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEe-----------cC-CcEEEEecCCCcEEEEEe
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNW-----------SD-YRYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-----------~~-~~~l~~~~~dg~i~iwd~ 171 (183)
.+++....+.. ...+.+|...+..++| +| +..++..+.||.+++|.+
T Consensus 206 ~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 206 EIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 88887776544 2445668777766655 33 367777777777777764
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=86.38 E-value=18 Score=30.14 Aligned_cols=129 Identities=12% Similarity=0.101 Sum_probs=75.1
Q ss_pred ccceEEEecc---CCCeeEEEEccC--CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCc----------ceEEEE
Q psy2113 42 KTPLITLKGH---KEAISAVQWTAV--DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE----------WVQSVR 106 (183)
Q Consensus 42 ~~~~~~~~~h---~~~v~~~~~~~~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~----------~v~~~~ 106 (183)
..++..+..+ ..+...++|+|. ++||.....|.-.||++.......... ......+.+ .-..+.
T Consensus 132 ~~~l~~i~~~~tgg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~-~~~~~~~~gsi~~d~~e~s~w~rI~ 210 (765)
T PF10214_consen 132 PNPLLTISSSDTGGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSN-LRLSRNISGSIIFDPEELSNWKRIL 210 (765)
T ss_pred cceeEEechhhcCCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcc-eeeccCCCccccCCCcccCcceeeE
Confidence 3445555432 346778999976 469999999999999992211111000 111111112 234778
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCCCCCcce-EEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCC
Q psy2113 107 WSPIDPQLFVSASFDNSVKLWDLRSPKVPL-FDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 107 ~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~ 174 (183)
|.+ +.+.++.++ ...+.++|+++..... .......+.|.++.-++. .+++.-+ ...|...++...
T Consensus 211 W~~-~~~~lLv~~-r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 211 WVS-DSNRLLVCN-RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred ecC-CCCEEEEEc-CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 877 555565554 5688999998876412 223334567888887754 3333322 356777777663
|
These proteins are found in fungi. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=85.58 E-value=12 Score=27.28 Aligned_cols=111 Identities=13% Similarity=0.109 Sum_probs=63.1
Q ss_pred CeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC-
Q psy2113 54 AISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP- 132 (183)
Q Consensus 54 ~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~- 132 (183)
.+.++... .+.++.|.....+.++..+.... ...+. .-......++++.+-+ +++.++.+..+|.+.++.....
T Consensus 131 ~i~sl~~~-~~~I~vgD~~~sv~~~~~~~~~~--~l~~v-a~d~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~~~~ 205 (321)
T PF03178_consen 131 YITSLSVF-KNYILVGDAMKSVSLLRYDEENN--KLILV-ARDYQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYNPEI 205 (321)
T ss_dssp SEEEEEEE-TTEEEEEESSSSEEEEEEETTTE---EEEE-EEESS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-SS-
T ss_pred EEEEEecc-ccEEEEEEcccCEEEEEEEccCC--EEEEE-EecCCCccEEEEEEec-CCcEEEEEcCCCeEEEEEECCCC
Confidence 55666554 45788998888888886554211 11111 1223456688998887 4469999999999999877631
Q ss_pred ------C-cceE-EeccCCCcEEEE---EecC--C-------cEEEEecCCCcEEEE
Q psy2113 133 ------K-VPLF-DMLGHEDKVMCV---NWSD--Y-------RYIMSGGQDNSVRVF 169 (183)
Q Consensus 133 ------~-~~~~-~~~~~~~~v~~~---~~~~--~-------~~l~~~~~dg~i~iw 169 (183)
. .... ......+.|+++ .+.+ + ..++-++.+|.|-..
T Consensus 206 ~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 206 PNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred cccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 1 1111 112234567777 4334 1 247888889998743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG1896|consensus | Back alignment and domain information |
|---|
Probab=85.57 E-value=24 Score=30.80 Aligned_cols=162 Identities=14% Similarity=0.134 Sum_probs=86.6
Q ss_pred ceeceeEEEEEeecCcEEEEEEeccCCCCccccccc---CccceEE--EeccCCCeeEEEEccCCeEEEEeCCCeEEEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTNIEVTSLPSFFQLIL---QKTPLIT--LKGHKEAISAVQWTAVDEIITSSWDHTLKIWD 79 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd 79 (183)
+.+.++.+.+|......-+-+.+.++++.....+.. +.-.++. .+..+++|..++= -+|.|+++. ..+|.+|+
T Consensus 1045 ~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G~l~~~~-GqKI~v~~ 1122 (1366)
T KOG1896|consen 1045 KKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRGHLLSSQ-GQKIIVRK 1122 (1366)
T ss_pred CcceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-eccEEEEcc-CcEEEEEE
Confidence 456777777776655555555555555443221111 1111222 2345677776653 347777754 56889999
Q ss_pred cCC-CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec--cCCCcEEEEEec-CC-
Q psy2113 80 AEL-GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML--GHEDKVMCVNWS-DY- 154 (183)
Q Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~-~~- 154 (183)
++. ..... . .+-.-.-.++++ .- -.++|+.|.--..|.+............+. ...-.+.++.|. ++
T Consensus 1123 l~r~~~lig----V-aFiD~~~yv~s~--~~-vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~ 1194 (1366)
T KOG1896|consen 1123 LDRDSELIG----V-AFIDLPLYVHSM--KV-VKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGS 1194 (1366)
T ss_pred eccCCccee----e-EEeccceeEEeh--hh-hhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCC
Confidence 943 33211 1 122222223332 22 356777776656665554443221122222 122367888887 44
Q ss_pred -cEEEEecCCCcEEEEEecCCCC
Q psy2113 155 -RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 155 -~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
-.++++..|+.|+++-......
T Consensus 1195 ~L~flvsDa~rNi~vy~Y~Pe~~ 1217 (1366)
T KOG1896|consen 1195 NLSFLVSDADRNIHVYMYAPENI 1217 (1366)
T ss_pred eeEEEEEcCCCcEEEEEeCCCCc
Confidence 5778889999999987655443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.23 E-value=10 Score=28.00 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=34.2
Q ss_pred EEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe-CCCeEEEEeCCCCCcceEEec
Q psy2113 75 LKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS-FDNSVKLWDLRSPKVPLFDML 140 (183)
Q Consensus 75 v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~ 140 (183)
|-++|+.+.+. +..+.. ..++.+|..+.++..+|++.+ .++.+.+||..+++. +....
T Consensus 271 VWv~D~~t~kr------v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~-~~~~~ 329 (342)
T PF06433_consen 271 VWVYDLKTHKR------VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL-VRSIE 329 (342)
T ss_dssp EEEEETTTTEE------EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E-EEEE-
T ss_pred EEEEECCCCeE------EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE-Eeehh
Confidence 55555555543 223321 235778888885555666554 579999999999975 54444
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=85.19 E-value=2.8 Score=19.78 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=16.3
Q ss_pred CCEEEEEeCCCeEEEEeCCCCCc
Q psy2113 112 PQLFVSASFDNSVKLWDLRSPKV 134 (183)
Q Consensus 112 ~~~l~~~~~dg~i~vwd~~~~~~ 134 (183)
..++++...++.|.++|..+.+.
T Consensus 4 ~~lyv~~~~~~~v~~id~~~~~~ 26 (42)
T TIGR02276 4 TKLYVTNSGSNTVSVIDTATNKV 26 (42)
T ss_pred CEEEEEeCCCCEEEEEECCCCeE
Confidence 33555555678999999987764
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=85.09 E-value=18 Score=28.94 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=41.2
Q ss_pred eEEEEccCCeEEEE-eCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q psy2113 56 SAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP 132 (183)
Q Consensus 56 ~~~~~~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~ 132 (183)
.++-|+|...+++. .....--+++++..... ....+ ...+.|+|.+|.+++.+++++.+..=.-++||-...
T Consensus 116 QGCVWHPk~~iL~VLT~~dvSV~~sV~~d~sr----VkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 116 QGCVWHPKKAILTVLTARDVSVLPSVHCDSSR----VKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CcccccCCCceEEEEecCceeEeeeeeeCCce----EEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 35778887764443 22222234555543321 12233 356789999999944445555454456789987654
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.98 E-value=13 Score=27.37 Aligned_cols=114 Identities=4% Similarity=-0.055 Sum_probs=63.1
Q ss_pred CCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEe-ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 52 KEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTF-SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 52 ~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
...++++.+.+++.++..+..|.+++=....+.. ......- ..-...+..+.+.| ++..++.| .+|.+.. ...
T Consensus 214 ~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~s---W~~~~~~~~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~~-S~d 287 (334)
T PRK13684 214 SRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLES---WSKPIIPEITNGYGYLDLAYRT-PGEIWAGG-GNGTLLV-SKD 287 (334)
T ss_pred cccceeeeEcCCCCEEEEecCCEEEEccCCCCCc---cccccCCccccccceeeEEEcC-CCCEEEEc-CCCeEEE-eCC
Confidence 4578899999888876667778775422222211 0000000 00123467888888 66655554 5676553 233
Q ss_pred CCCcceEEe---ccCCCcEEEEEecCCcEEEEecCCCcEEEEEec
Q psy2113 131 SPKVPLFDM---LGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 131 ~~~~~~~~~---~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~ 172 (183)
.++. =... ..-....+.+.|.+++..+..+..|.|.-|+-.
T Consensus 288 ~G~t-W~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 288 GGKT-WEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCCC-CeECCcCCCCCcceEEEEEeCCCceEEECCCceEEEecCC
Confidence 3332 1111 122245778888866555667778998887643
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.69 E-value=14 Score=27.30 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=58.8
Q ss_pred CCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q psy2113 53 EAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP 132 (183)
Q Consensus 53 ~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~ 132 (183)
+.++.+.+.+++.++..+..|.+..- .+.... .. ......-...++.+.+.| +++.++.+ ..|.+.+=....+
T Consensus 173 g~~~~i~~~~~g~~v~~g~~G~i~~s-~~~gg~--tW--~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G 245 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSRGNFYST-WEPGQT--AW--TPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDL 245 (334)
T ss_pred ceEEEEEECCCCeEEEEeCCceEEEE-cCCCCC--eE--EEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCC
Confidence 45777888888777776777766532 111111 01 111123346788999998 67776665 4577653223333
Q ss_pred Ccce-EEec--cCCCcEEEEEecCCcEEEEecCCCcEEE
Q psy2113 133 KVPL-FDML--GHEDKVMCVNWSDYRYIMSGGQDNSVRV 168 (183)
Q Consensus 133 ~~~~-~~~~--~~~~~v~~~~~~~~~~l~~~~~dg~i~i 168 (183)
..-. .... .....+..+.+.++..++.++.+|.+..
T Consensus 246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~ 284 (334)
T PRK13684 246 ESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV 284 (334)
T ss_pred CccccccCCccccccceeeEEEcCCCCEEEEcCCCeEEE
Confidence 2100 0111 1123467888886655666667776653
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.02 E-value=14 Score=26.78 Aligned_cols=77 Identities=8% Similarity=0.157 Sum_probs=48.1
Q ss_pred ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc-CCCcEEEEEec-CCcEEEEecCCCcEEEEEecC
Q psy2113 96 SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG-HEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 96 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 173 (183)
.+-...+.++.|+| +.+.|.+......-.|+=..+++. +....- --.....+.|. ++.+.++--.++.+.++.+..
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 44555699999999 666776666667767776666654 333221 12234556776 445666666677777776655
Q ss_pred C
Q psy2113 174 Q 174 (183)
Q Consensus 174 ~ 174 (183)
.
T Consensus 160 ~ 160 (316)
T COG3204 160 D 160 (316)
T ss_pred C
Confidence 4
|
|
| >PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length | Back alignment and domain information |
|---|
Probab=83.03 E-value=2.9 Score=18.22 Aligned_cols=26 Identities=12% Similarity=0.381 Sum_probs=19.6
Q ss_pred CcEEEEEecCCcEEEEecCCCcEEEEE
Q psy2113 144 DKVMCVNWSDYRYIMSGGQDNSVRVFK 170 (183)
Q Consensus 144 ~~v~~~~~~~~~~l~~~~~dg~i~iwd 170 (183)
..|.+++..+ .+++.+.+.+.+|+|.
T Consensus 2 E~i~aia~g~-~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD-SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC-CEEEEEeCCCeEEecC
Confidence 3567777666 5888888889999873
|
The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important. |
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=82.42 E-value=16 Score=26.32 Aligned_cols=94 Identities=14% Similarity=0.232 Sum_probs=58.6
Q ss_pred CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe------CCCeEEEEeCCCCCcceEEecc----
Q psy2113 72 DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS------FDNSVKLWDLRSPKVPLFDMLG---- 141 (183)
Q Consensus 72 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~------~dg~i~vwd~~~~~~~~~~~~~---- 141 (183)
-..+.+||..+.+.. ..-.+-.+.|+.+.|.. +.++++.|. ....+..||..+..- ..+.+
T Consensus 15 C~~lC~yd~~~~qW~------~~g~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w--~~~~~~~s~ 85 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWS------SPGNGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTW--SSLGGGSSN 85 (281)
T ss_pred CCEEEEEECCCCEee------cCCCCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCee--eecCCcccc
Confidence 356889998876652 12233567899999986 666777774 345788999987652 23333
Q ss_pred -CCCcEEEEEec--CC-cEEEEec-C--CCcEEEEEecCC
Q psy2113 142 -HEDKVMCVNWS--DY-RYIMSGG-Q--DNSVRVFKTKHQ 174 (183)
Q Consensus 142 -~~~~v~~~~~~--~~-~~l~~~~-~--dg~i~iwd~~~~ 174 (183)
-.++|..+.+. +. +..++|. . +..|..||=.+.
T Consensus 86 ~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W 125 (281)
T PF12768_consen 86 SIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSW 125 (281)
T ss_pred cCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCce
Confidence 24688888875 33 4554443 2 334677764443
|
|
| >smart00564 PQQ beta-propeller repeat | Back alignment and domain information |
|---|
Probab=82.28 E-value=3.3 Score=18.36 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=18.7
Q ss_pred cEEEEecCCCcEEEEEecCCCCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
..++.++.+|.+..+|.++++..
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEE
Confidence 46788888999999999887654
|
Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=82.21 E-value=12 Score=24.64 Aligned_cols=29 Identities=7% Similarity=0.236 Sum_probs=23.3
Q ss_pred CeeEEEEccCCe-------EEEEeCCCeEEEEEcCC
Q psy2113 54 AISAVQWTAVDE-------IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 54 ~v~~~~~~~~~~-------l~s~~~d~~v~vwd~~~ 82 (183)
.|..++|+|.|. |++.+.++.+.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 688999997432 77889999999998653
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=81.93 E-value=18 Score=26.48 Aligned_cols=71 Identities=7% Similarity=0.056 Sum_probs=49.2
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEeCC------CCCcceEEecc-----CCCcEEEEEecCC-------------cE
Q psy2113 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLR------SPKVPLFDMLG-----HEDKVMCVNWSDY-------------RY 156 (183)
Q Consensus 101 ~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~------~~~~~~~~~~~-----~~~~v~~~~~~~~-------------~~ 156 (183)
.-+.|+++| .+.+.++....+...+||.. .....+..+.. .....+.+.|+.. ..
T Consensus 24 N~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 357899999 77888888888999999997 12221333332 2346788888732 23
Q ss_pred EEEecCCCcEEEEEec
Q psy2113 157 IMSGGQDNSVRVFKTK 172 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~ 172 (183)
++.+++||+|.-|...
T Consensus 103 Fif~tEdGTisaW~p~ 118 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPA 118 (336)
T ss_pred EEEEeCCceEEeecCc
Confidence 5778899999999853
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=81.71 E-value=24 Score=27.95 Aligned_cols=104 Identities=12% Similarity=0.064 Sum_probs=58.9
Q ss_pred CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecC-CcceE----------EEEEecCCCCEEEEEeCCCeEEEEeCCC
Q psy2113 63 VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH-KEWVQ----------SVRWSPIDPQLFVSASFDNSVKLWDLRS 131 (183)
Q Consensus 63 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~-~~~v~----------~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 131 (183)
++.++.++.++.|+-.|..+++. +..+... ...+. .+++. +..++.++.|+.+.-.|.++
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~------lW~~~~~~~~~~~~~~~~~~~~rg~av~---~~~v~v~t~dg~l~ALDa~T 139 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKE------LWKYDPKLPDDVIPVMCCDVVNRGVALY---DGKVFFGTLDARLVALDAKT 139 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCce------eeEecCCCCcccccccccccccccceEE---CCEEEEEcCCCEEEEEECCC
Confidence 57788888888999999988775 3332211 00111 12221 23566777899999999999
Q ss_pred CCcceEEecc--CC--CcEEE-EEecCCcEEEEecC------CCcEEEEEecCCCCC
Q psy2113 132 PKVPLFDMLG--HE--DKVMC-VNWSDYRYIMSGGQ------DNSVRVFKTKHQPKS 177 (183)
Q Consensus 132 ~~~~~~~~~~--~~--~~v~~-~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~ 177 (183)
++. +-.... +. ..+.+ -... +..++.+.. +|.|.-+|.++++..
T Consensus 140 Gk~-~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~~~~~G~v~AlD~~TG~~l 194 (527)
T TIGR03075 140 GKV-VWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGEFGVRGYVTAYDAKTGKLV 194 (527)
T ss_pred CCE-EeecccccccccccccCCcEEE-CCEEEEeecccccCCCcEEEEEECCCCcee
Confidence 885 322221 11 01111 1111 234444432 688998888887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=81.60 E-value=18 Score=26.27 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=38.0
Q ss_pred EEccCCeEEEEeC------CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEE
Q psy2113 59 QWTAVDEIITSSW------DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118 (183)
Q Consensus 59 ~~~~~~~l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 118 (183)
.|+++|.++-++. -|.|-|||.+..-. . ...+..|.-..+.+.+.+ +++.++.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fq-r----vgE~~t~GiGpHev~lm~-DGrtlvva 179 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ-R----VGEFSTHGIGPHEVTLMA-DGRTLVVA 179 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccc-e----ecccccCCcCcceeEEec-CCcEEEEe
Confidence 5788888655543 36789999885332 1 445667777788999999 78777765
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=81.09 E-value=5 Score=32.98 Aligned_cols=68 Identities=16% Similarity=0.267 Sum_probs=42.2
Q ss_pred CcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEE
Q psy2113 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFK 170 (183)
Q Consensus 99 ~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd 170 (183)
...++++.-+| .++-++.++.||.|.+|+.-..+. ..+.....+-..+.|.+ .-+++...|+.+.-|.
T Consensus 14 ~e~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~q--ski~~~~~p~~nlv~tn-hgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQ--SKICEEAKPKENLVFTN-HGLVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecC-CCceEEEEecCCcEEEEeecccch--hhhhhhcCCccceeeec-cceEEEeccchhheee
Confidence 44577888899 899999999999999998865442 11111122333444543 2345555566555554
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=80.56 E-value=23 Score=26.96 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=63.9
Q ss_pred CCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEee--cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 52 KEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFS--SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 52 ~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
...+..+.|.+++.++..+.+|.+..-+ ..+..-. ........ .....+..+.+.+ ++..+++| .+|.+....
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~~G~l~~S~-d~G~~~~-~~~f~~~~~~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~- 354 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTRGGGLYVSK-GTGLTEE-DFDFEEADIKSRGFGILDVGYRS-KKEAWAAG-GSGILLRST- 354 (398)
T ss_pred ccceeeeeEcCCCCEEEEeCCceEEEec-CCCCccc-ccceeecccCCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeC-
Confidence 4567899999888887777888876433 2221100 00011111 1223488888887 66666555 567766553
Q ss_pred CCCCcceEE--eccCCCcEEEEEecCCcEEEEecCCCcEEEE
Q psy2113 130 RSPKVPLFD--MLGHEDKVMCVNWSDYRYIMSGGQDNSVRVF 169 (183)
Q Consensus 130 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iw 169 (183)
..++.-... ...-....+.+.|.+++.....+.+|.|.-|
T Consensus 355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 355 DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEEe
Confidence 223210111 1223456789999876666666778887655
|
|
| >PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A | Back alignment and domain information |
|---|
Probab=80.30 E-value=3.4 Score=19.52 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=15.5
Q ss_pred CcEEEEecCCCcEEEEEecC
Q psy2113 154 YRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 154 ~~~l~~~~~dg~i~iwd~~~ 173 (183)
+..++.++.||.++.+|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 46888899999999999764
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=80.04 E-value=37 Score=29.03 Aligned_cols=106 Identities=14% Similarity=0.213 Sum_probs=59.2
Q ss_pred CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecC--CCC---EEEEEeCCCeEEEEeCCCCCc-ce
Q psy2113 63 VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI--DPQ---LFVSASFDNSVKLWDLRSPKV-PL 136 (183)
Q Consensus 63 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~--~~~---~l~~~~~dg~i~vwd~~~~~~-~~ 136 (183)
..+++.++.++.+...++...... ...-......|.|+.++|. +.+ +++.|..+..+.+--...... ..
T Consensus 499 ~sqVvvA~~~~~l~y~~i~~~~l~-----e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~ 573 (1096)
T KOG1897|consen 499 ASQVVVAGGGLALFYLEIEDGGLR-----EVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT 573 (1096)
T ss_pred ceEEEEecCccEEEEEEeecccee-----eeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee
Confidence 345666666677766666554421 1111223567899999874 233 788888776655443332222 12
Q ss_pred EEeccCCCcEEEEEec----CCcEEEEecCCCcEEEEEecC
Q psy2113 137 FDMLGHEDKVMCVNWS----DYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 137 ~~~~~~~~~v~~~~~~----~~~~l~~~~~dg~i~iwd~~~ 173 (183)
.....-+....++.+. +..+|.++..||.+..|.+..
T Consensus 574 ~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 574 HEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDI 614 (1096)
T ss_pred eeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEc
Confidence 2212223333444443 358999999999987765443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 183 | ||||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-13 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-13 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-13 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 3e-13 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 3e-13 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 3e-13 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 3e-13 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 4e-13 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-13 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-13 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 4e-13 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 4e-13 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 4e-13 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 4e-13 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 4e-13 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 4e-13 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 5e-13 | ||
| 3iz6_a | 380 | Localization Of The Small Subunit Ribosomal Protein | 1e-10 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 3e-09 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 2e-08 | ||
| 1p22_A | 435 | Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex | 9e-04 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-08 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 3e-08 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-07 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 2e-07 | ||
| 2xzm_R | 343 | Crystal Structure Of The Eukaryotic 40s Ribosomal S | 3e-07 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 4e-07 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 4e-07 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 4e-07 | ||
| 3sn6_B | 351 | Crystal Structure Of The Beta2 Adrenergic Receptor- | 5e-07 | ||
| 1got_B | 340 | Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer | 5e-07 | ||
| 1gg2_B | 340 | G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet | 5e-07 | ||
| 2bcj_B | 340 | Crystal Structure Of G Protein-coupled Receptor Kin | 5e-07 | ||
| 1a0r_B | 340 | Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA- | 6e-07 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-06 | ||
| 2pm9_A | 416 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 4e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 1e-06 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 2e-06 | ||
| 2ovp_B | 445 | Structure Of The Skp1-Fbw7 Complex Length = 445 | 3e-06 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-06 | ||
| 3dm0_A | 694 | Maltose Binding Protein Fusion With Rack1 From A. T | 4e-06 | ||
| 3mkq_A | 814 | Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco | 6e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 6e-06 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 9e-06 | ||
| 2ynp_A | 604 | Yeast Betaprime Cop 1-604 With Ktktn Motif Length = | 1e-05 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 1e-05 | ||
| 2yno_A | 310 | Yeast Betaprime Cop 1-304h6 Length = 310 | 2e-05 | ||
| 2ynn_A | 304 | Yeast Betaprime Cop 1-304 With Ktktn Motif Length = | 2e-05 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 2e-05 | ||
| 1r5m_A | 425 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 3e-05 | ||
| 2hes_X | 330 | Cytosolic Iron-sulphur Assembly Protein- 1 Length = | 3e-05 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 3e-05 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 3e-05 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 4e-05 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-05 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-05 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 5e-05 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-05 | ||
| 4a11_B | 408 | Structure Of The Hsddb1-Hscsa Complex Length = 408 | 7e-05 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 7e-05 | ||
| 4aow_A | 340 | Crystal Structure Of The Human Rack1 Protein At A R | 8e-05 | ||
| 2pbi_B | 354 | The Multifunctional Nature Of Gbeta5RGS9 REVEALED F | 9e-05 | ||
| 2zkq_a | 317 | Structure Of A Mammalian Ribosomal 40s Subunit With | 1e-04 | ||
| 1nr0_A | 611 | Two Seven-Bladed Beta-Propeller Domains Revealed By | 2e-04 | ||
| 4gqb_B | 344 | Crystal Structure Of The Human Prmt5:mep50 Complex | 2e-04 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 3e-04 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 4e-04 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 4e-04 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 4e-04 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 4e-04 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 4e-04 | ||
| 3odt_A | 313 | Crystal Structure Of Wd40 Beta Propeller Domain Of | 6e-04 |
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351 | Back alignment and structure |
|
| >pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340 | Back alignment and structure |
|
| >pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340 | Back alignment and structure |
|
| >pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 416 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694 | Back alignment and structure |
|
| >pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310 | Back alignment and structure |
|
| >pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425 | Back alignment and structure |
|
| >pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex Length = 408 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340 | Back alignment and structure |
|
| >pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354 | Back alignment and structure |
|
| >pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317 | Back alignment and structure |
|
| >pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611 | Back alignment and structure |
|
| >pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex Length = 344 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1 Length = 313 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 183 | |||
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.96 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.96 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.96 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.96 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.96 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.96 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.96 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.95 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.95 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.95 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.95 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.95 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.95 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.95 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.95 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.95 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.94 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.94 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.94 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.94 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.94 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.94 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.94 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.94 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.94 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.94 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.94 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.93 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.93 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.93 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.93 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.93 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.93 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.93 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.93 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.93 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.93 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.93 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.92 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.92 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.92 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.92 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.92 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.92 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.92 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.92 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.92 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.91 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.91 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.91 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.91 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.91 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.91 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.91 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.91 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.91 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.91 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.91 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.91 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.91 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.91 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.91 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.91 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.91 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.91 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.9 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.9 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.9 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.9 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.9 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.9 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.9 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.9 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.9 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.9 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.9 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.9 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.9 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.89 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.89 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.89 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.89 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.89 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.89 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.89 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.89 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.89 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.89 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.89 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.89 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.89 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.88 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.88 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.88 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.88 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.88 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.88 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.88 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.88 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.88 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.88 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.88 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.88 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.87 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.87 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.87 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.87 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.86 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.86 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.86 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.85 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.85 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.85 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.85 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.84 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.82 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.76 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.75 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.74 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.73 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.73 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.68 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.61 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.57 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.56 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.54 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.54 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.54 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.54 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.53 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.52 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.51 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.51 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.5 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.49 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.49 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.48 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.47 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.45 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.44 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.44 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.43 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.43 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.41 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.4 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.4 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.39 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.39 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.39 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.34 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.33 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.32 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.31 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.29 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.27 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.27 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.26 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.23 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.21 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.19 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.18 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.13 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.12 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.08 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.07 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.06 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.06 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.06 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.04 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.01 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 98.99 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.98 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.96 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.95 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.93 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.92 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.88 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.88 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.85 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.85 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.84 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.78 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.78 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.78 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.77 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.76 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.72 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.71 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.7 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.7 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.67 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.62 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.6 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.58 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.57 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.55 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.55 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.52 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.5 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.5 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.48 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.45 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.44 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.42 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.39 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.29 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.24 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.16 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.16 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.13 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.06 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 97.98 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.97 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.96 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.95 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.92 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.91 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.87 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.87 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.83 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.81 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.77 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.74 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.72 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.68 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.64 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.64 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.61 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.59 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.58 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.57 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.53 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.5 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.46 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.44 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.34 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.29 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.27 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.26 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.2 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.17 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 97.07 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.04 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.02 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 96.92 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 96.91 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.9 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.9 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 96.88 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.81 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.8 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.78 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.77 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.69 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.67 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 96.59 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 96.5 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 96.5 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 96.49 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.44 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.37 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.32 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.14 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.05 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.01 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.86 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 95.85 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.79 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 95.78 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 95.74 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.73 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.73 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 95.69 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 95.67 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 95.64 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.5 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 95.43 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.41 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.12 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 95.06 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 94.67 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 94.66 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 94.61 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 94.49 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 94.41 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.3 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 94.07 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 93.77 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 93.69 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 93.66 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 93.65 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.49 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 93.05 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 92.68 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 92.66 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 92.4 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 92.32 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 91.68 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 91.51 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 90.9 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 90.67 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 90.04 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 89.07 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 88.41 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 88.26 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 88.13 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 88.02 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 87.64 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 87.42 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 87.05 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 87.01 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 86.74 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 85.09 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 84.09 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 83.76 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 83.41 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 82.46 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 81.17 | |
| 4gq2_M | 950 | Nucleoporin NUP120; beta propeller alpha helical, | 81.0 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 81.0 |
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=173.53 Aligned_cols=157 Identities=22% Similarity=0.316 Sum_probs=136.5
Q ss_pred eeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 6 FGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
..-.+.+++|+|++.+++++. +++|+ ......+..+..|..+|.+++|+|++. |++|+.|+.|++||+
T Consensus 12 h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~ 84 (304)
T 2ynn_A 12 RSDRVKGIDFHPTEPWVLTTLYSGRVELWN-------YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY 84 (304)
T ss_dssp ECSCEEEEEECSSSSEEEEEETTSEEEEEE-------TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred CCCceEEEEECCCCCEEEEEcCCCcEEEEE-------CCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence 334578899999999988876 77774 345667788999999999999998755 899999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-C-cEEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-Y-RYIM 158 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~ 158 (183)
.+++. ...+.+|...|.+++|+| ++.++++|+.|+.|++||++++......+.+|...|.+++|+| + ..|+
T Consensus 85 ~~~~~------~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 85 NTGEK------VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp TTCCE------EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred CCCcE------EEEEeCCCCcEEEEEEcC-CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence 88765 667889999999999999 8889999999999999999987655677889999999999997 3 7999
Q ss_pred EecCCCcEEEEEecCCCC
Q psy2113 159 SGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~~ 176 (183)
+|+.|++|++||+++...
T Consensus 158 sgs~D~~v~iwd~~~~~~ 175 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQSTP 175 (304)
T ss_dssp EEETTSEEEEEETTCSSC
T ss_pred EEeCCCeEEEEECCCCCc
Confidence 999999999999976653
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=172.23 Aligned_cols=149 Identities=29% Similarity=0.523 Sum_probs=132.1
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
.+.+++|+|++..++.+. +++|+ ....+.+..+.+|..+|.+++|+|++. |++|+.|+.|++||++..
T Consensus 166 ~v~~~~~spdg~~lasg~~dg~i~iwd-------~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~ 238 (321)
T 3ow8_A 166 FILSIAYSPDGKYLASGAIDGIINIFD-------IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA 238 (321)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-------TTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEE-------CCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc
Confidence 467899999999999876 66664 446677888999999999999998876 889999999999999876
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQ 162 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~ 162 (183)
+. ...+.+|...|.+++|+| ++.+|++++.|+.|++||++++++ +..+.+|...|.+++|+++ .+|++++.
T Consensus 239 ~~------~~~~~~h~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 239 NL------AGTLSGHASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTC-VHTFFDHQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp CE------EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ce------eEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEE-EEEEcCCCCcEEEEEECCCCCEEEEEeC
Confidence 64 567889999999999999 889999999999999999998876 7888899999999999975 89999999
Q ss_pred CCcEEEEEec
Q psy2113 163 DNSVRVFKTK 172 (183)
Q Consensus 163 dg~i~iwd~~ 172 (183)
||.|++||..
T Consensus 311 d~~i~vwd~p 320 (321)
T 3ow8_A 311 DQEIHIYDCP 320 (321)
T ss_dssp TCCEEEEECC
T ss_pred CCeEEEEeCC
Confidence 9999999963
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=173.92 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=128.3
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEEEEcCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vwd~~~ 82 (183)
.+.+++|+|++..++.+. +++|+ ....+.+..+.+|.+.|.+++|++++ .|++++.|++|++||+++
T Consensus 129 ~V~~v~~spdg~~l~sgs~d~~i~iwd-------~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~ 201 (344)
T 4gqb_B 129 IVSTVSVLSSGTQAVSGSKDICIKVWD-------LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC 201 (344)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-------TTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEE-------CCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccc
Confidence 567899999999998876 67774 45677889999999999999999775 378999999999999988
Q ss_pred CCCccCceeEEEe--ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEE
Q psy2113 83 GGMKKGAIVKSTF--SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIM 158 (183)
Q Consensus 83 ~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~ 158 (183)
++. ...+ ..+...+.+++|+|+++.++++|+.||.|++||+++++. +..+.+|...|++++|+|+ .+|+
T Consensus 202 ~~~------~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~fsp~g~~~la 274 (344)
T 4gqb_B 202 PKP------ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC-VLSSAVHSQCVTGLVFSPHSVPFLA 274 (344)
T ss_dssp SSC------EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C-CEEEECCSSCEEEEEECSSSSCCEE
T ss_pred cce------eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCeEEE
Confidence 765 3333 345667999999997778999999999999999999886 7889999999999999975 5799
Q ss_pred EecCCCcEEEEEecCCC
Q psy2113 159 SGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~ 175 (183)
+|+.|++|++||+++++
T Consensus 275 sgs~D~~i~vwd~~~~~ 291 (344)
T 4gqb_B 275 SLSEDCSLAVLDSSLSE 291 (344)
T ss_dssp EEETTSCEEEECTTCCE
T ss_pred EEeCCCeEEEEECCCCc
Confidence 99999999999988764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=170.89 Aligned_cols=165 Identities=19% Similarity=0.217 Sum_probs=130.3
Q ss_pred eeEEEEEeecCcEEEEEE---eccCCCCcccc----cccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTN---IEVTSLPSFFQ----LILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~ 81 (183)
...+++|+|+|.+++.+. +++|+...... .............|...|.+++|+|++.|++|+.||.|+|||++
T Consensus 32 ~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~ 111 (344)
T 4gqb_B 32 QLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELD 111 (344)
T ss_dssp EEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEEEEEecc
Confidence 467899999999988765 55565321110 01111122233457788999999999999999999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMS 159 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~ 159 (183)
+++... .......+|...|++++|+| ++++|++|+.|+.|++||+++++. +..+.+|...|++++|+++ .++++
T Consensus 112 ~~~~~~--~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~-~~~~~~h~~~V~~~~~~~~~~~~l~s 187 (344)
T 4gqb_B 112 ENETLI--VSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVV-LSSYRAHAAQVTCVAASPHKDSVFLS 187 (344)
T ss_dssp TTSSCE--EEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECSSCTTEEEE
T ss_pred CCCcee--EeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE-EEEEcCcCCceEEEEecCCCCCceee
Confidence 876422 11234568999999999999 899999999999999999999876 8889999999999999964 57899
Q ss_pred ecCCCcEEEEEecCCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~~ 177 (183)
++.|++|++||+++++..
T Consensus 188 ~s~D~~v~iwd~~~~~~~ 205 (344)
T 4gqb_B 188 CSEDNRILLWDTRCPKPA 205 (344)
T ss_dssp EETTSCEEEEETTSSSCE
T ss_pred ecccccccccccccccee
Confidence 999999999999987654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-27 Score=167.47 Aligned_cols=156 Identities=26% Similarity=0.418 Sum_probs=134.6
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~ 84 (183)
.+.+++|+|++..++++. +++|++... .........+.+|.+.|.++.|++++.+++++.|+.|++||+++++
T Consensus 99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~ 175 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTR---EGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ 175 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTC---SBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECccC---CCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc
Confidence 356789999999998876 666765421 1223456678899999999999999999999999999999998766
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQD 163 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d 163 (183)
. ...+.+|...|.+++|+| ++.++++|+.|+.|++||++++.. ...+.+|...|++++|+|+ .+|++++.|
T Consensus 176 ~------~~~~~~h~~~v~~~~~~~-~~~~l~sg~~d~~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l~s~s~d 247 (340)
T 1got_B 176 Q------TTTFTGHTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAFATGSDD 247 (340)
T ss_dssp E------EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCSE-EEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred E------EEEEcCCCCceEEEEECC-CCCEEEEEeCCCcEEEEECCCCee-EEEEcCCcCCEEEEEEcCCCCEEEEEcCC
Confidence 4 567889999999999999 889999999999999999999876 7788999999999999976 899999999
Q ss_pred CcEEEEEecCCC
Q psy2113 164 NSVRVFKTKHQP 175 (183)
Q Consensus 164 g~i~iwd~~~~~ 175 (183)
|.|++||+++.+
T Consensus 248 ~~v~iwd~~~~~ 259 (340)
T 1got_B 248 ATCRLFDLRADQ 259 (340)
T ss_dssp SCEEEEETTTTE
T ss_pred CcEEEEECCCCc
Confidence 999999998754
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-27 Score=172.32 Aligned_cols=153 Identities=26% Similarity=0.342 Sum_probs=135.0
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
..+.+++|+|++.+++.+. +++|+ ....+....+.+|.+.|.+++|+|++. |++|+.|++|++||+.+
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd-------~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~ 181 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWD-------YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG 181 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEE-------TTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEE-------CCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence 3577889999999988875 77774 345667788999999999999998765 88999999999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
.+. ...+.+|...|.+++|+| ++.++++|+.|+.|++||++++.+ +..+.+|...|.++.|+++ .++++++
T Consensus 182 ~~~------~~~~~~h~~~V~~v~~~p-~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~~~~g~~l~s~s 253 (410)
T 1vyh_C 182 FEC------IRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASCS 253 (410)
T ss_dssp SCE------EECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred Cce------eEEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcE-EEEEeCCCccEEEEEECCCCCEEEEEc
Confidence 654 567789999999999999 889999999999999999999886 7788999999999999965 8999999
Q ss_pred CCCcEEEEEecCCC
Q psy2113 162 QDNSVRVFKTKHQP 175 (183)
Q Consensus 162 ~dg~i~iwd~~~~~ 175 (183)
.|+.|++||+++++
T Consensus 254 ~D~~v~vwd~~~~~ 267 (410)
T 1vyh_C 254 NDQTVRVWVVATKE 267 (410)
T ss_dssp TTSCEEEEETTTCC
T ss_pred CCCeEEEEECCCCc
Confidence 99999999998764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=168.09 Aligned_cols=152 Identities=20% Similarity=0.331 Sum_probs=132.4
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
+.+++|+|++..++++. +.+|+ ....+....+..|...|.+++|+|++. |++|+.|+.|++||+++++
T Consensus 125 ~~~~~~spdg~~l~~g~~dg~v~i~~-------~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~ 197 (321)
T 3ow8_A 125 AWTLAFSPDSQYLATGTHVGKVNIFG-------VESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGK 197 (321)
T ss_dssp CCCEEECTTSSEEEEECTTSEEEEEE-------TTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEE-------cCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence 45688999999998865 55563 345566778888999999999999876 8899999999999998776
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQD 163 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d 163 (183)
. ...+.+|...|.+++|+| ++.+|++|+.|+.|++||+++... ...+.+|...|.+++|+|+ .+|++++.|
T Consensus 198 ~------~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s~s~D 269 (321)
T 3ow8_A 198 L------LHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANL-AGTLSGHASWVLNVAFCPDDTHFVSSSSD 269 (321)
T ss_dssp E------EEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred E------EEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcce-eEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence 4 667889999999999999 889999999999999999998876 7788999999999999976 899999999
Q ss_pred CcEEEEEecCCCC
Q psy2113 164 NSVRVFKTKHQPK 176 (183)
Q Consensus 164 g~i~iwd~~~~~~ 176 (183)
+.|++||+++++.
T Consensus 270 ~~v~iwd~~~~~~ 282 (321)
T 3ow8_A 270 KSVKVWDVGTRTC 282 (321)
T ss_dssp SCEEEEETTTTEE
T ss_pred CcEEEEeCCCCEE
Confidence 9999999987653
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=165.99 Aligned_cols=164 Identities=23% Similarity=0.379 Sum_probs=126.7
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
-.+.+++|+|++.+++.+. +++|++..........+.+..+.+|.+.|.+++|+|++. |++|+.|++|++||++.
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~ 138 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCT
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccC
Confidence 3577899999999988876 777765422111123456778899999999999998876 89999999999999954
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC-cceEEeccCCCcEEEEEecCC---cEEE
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDMLGHEDKVMCVNWSDY---RYIM 158 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~~---~~l~ 158 (183)
... .......+.+|...|.+++|+| ++.+|++|+.|+.|++||.+++. .++..+.+|...|.+++|+|+ ..|+
T Consensus 139 ~~~--~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 215 (330)
T 2hes_X 139 SGE--EYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLC 215 (330)
T ss_dssp TCC--CCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEE
T ss_pred CCC--CeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEE
Confidence 321 1123456788999999999999 88999999999999999997652 236788899999999999964 5799
Q ss_pred EecCCCcEEEEEecCC
Q psy2113 159 SGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~ 174 (183)
+++.|++|++||++..
T Consensus 216 s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 216 SGSDDSTVRVWKYMGD 231 (330)
T ss_dssp EEETTSCEEEEEEEEE
T ss_pred EEeCCCeEEEEEecCC
Confidence 9999999999999764
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-26 Score=161.74 Aligned_cols=154 Identities=31% Similarity=0.495 Sum_probs=134.5
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
-.+.+++|+|++..++++. +++|+. ...+....+.+|...|.+++|+|++. |++++.|+.|++||+++
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~ 96 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGA-------YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS 96 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEET-------TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeC-------CCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence 3567889999999988876 666643 34566778899999999999998865 88999999999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
.+. ...+.+|...|.+++|+| +++++++|+.|+.|++||+++++. ...+..|..+|.+++|+++ .++++++
T Consensus 97 ~~~------~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~ 168 (312)
T 4ery_A 97 GKC------LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKC-LKTLPAHSDPVSAVHFNRDGSLIVSSS 168 (312)
T ss_dssp CCE------EEEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred CcE------EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEE-EEEecCCCCcEEEEEEcCCCCEEEEEe
Confidence 765 667889999999999999 889999999999999999998876 7788899999999999965 8999999
Q ss_pred CCCcEEEEEecCCCC
Q psy2113 162 QDNSVRVFKTKHQPK 176 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~ 176 (183)
.||.|++||+++++.
T Consensus 169 ~d~~i~~wd~~~~~~ 183 (312)
T 4ery_A 169 YDGLCRIWDTASGQC 183 (312)
T ss_dssp TTSCEEEEETTTCCE
T ss_pred CCCcEEEEECCCCce
Confidence 999999999987653
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.95 E-value=9e-27 Score=168.25 Aligned_cols=166 Identities=20% Similarity=0.217 Sum_probs=124.6
Q ss_pred eeEEEEEeecCcEEEEEE---eccCCCCccccc----ccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTN---IEVTSLPSFFQL----ILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~ 81 (183)
.+.+++|+|+|.+++.+. .++|+....... ...........+|...|.+++|+|++.+++++.|++|++||+.
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~ 123 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEIL 123 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC---
T ss_pred CEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeecc
Confidence 367899999999999875 223332111111 1122334455679999999999999999999999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMS 159 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~ 159 (183)
+++.... ......+|...|.+++|+| ++++|++|+.|+.|++||+++++. +..+.+|...|++++|+++ ..+++
T Consensus 124 ~~~~~~~--~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~-~~~~~~h~~~v~~v~~s~~~~~~~~s 199 (357)
T 4g56_B 124 EKESLLV--NKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAV-LKSYNAHSSEVNCVAACPGKDTIFLS 199 (357)
T ss_dssp -----CC--CCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTCSSCEEE
T ss_pred ccceeEE--EeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEccCCCceeee
Confidence 7654221 1224457999999999999 899999999999999999999876 7888999999999999954 58999
Q ss_pred ecCCCcEEEEEecCCCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~~~ 178 (183)
++.||.|++||+++++...
T Consensus 200 ~~~dg~v~~wd~~~~~~~~ 218 (357)
T 4g56_B 200 CGEDGRILLWDTRKPKPAT 218 (357)
T ss_dssp EETTSCEEECCTTSSSCBC
T ss_pred eccCCceEEEECCCCceee
Confidence 9999999999998876543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-26 Score=160.83 Aligned_cols=162 Identities=21% Similarity=0.369 Sum_probs=131.2
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc---CCeEEEEeCCCeEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA---VDEIITSSWDHTLKI 77 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~l~s~~~d~~v~v 77 (183)
...-.+.+++|+|+|..++++. +++|++. ....+.+..+.+|.++|.+++|++ +..|++|+.|++|++
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~-----~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i 81 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVE-----GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI 81 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBC-----SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecC-----CCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence 3444677899999999998876 7777542 123456788999999999999984 345999999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCC-CCEEEEEeCCCeEEEEeCCCCCc-ceEEeccCCCcEEEEEecCC-
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID-PQLFVSASFDNSVKLWDLRSPKV-PLFDMLGHEDKVMCVNWSDY- 154 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~- 154 (183)
||++++.... ...+..|...|.+++|+|+. +.++++++.|+.|++||+++... ....+.+|...|.+++|+|.
T Consensus 82 Wd~~~~~~~~----~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 157 (297)
T 2pm7_B 82 WKEENGRWSQ----IAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 157 (297)
T ss_dssp EEBSSSCBCC----CEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC
T ss_pred EEcCCCceEE----EEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCc
Confidence 9998654211 34567899999999999932 78999999999999999987632 24567899999999999974
Q ss_pred -------------cEEEEecCCCcEEEEEecCCC
Q psy2113 155 -------------RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 155 -------------~~l~~~~~dg~i~iwd~~~~~ 175 (183)
.+|++|+.|+.|++||+++.+
T Consensus 158 ~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 158 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp ------------CCEEEEEETTSCEEEEEEETTT
T ss_pred ccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 589999999999999998765
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=161.20 Aligned_cols=156 Identities=21% Similarity=0.386 Sum_probs=131.5
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
.+.+++|+|++..++++. +++|+ ....+.+..+.+|.+.|.+++|+|++. +++|+.|++|++||+++.
T Consensus 57 ~v~~~~~~~~~~~l~s~s~d~~i~vwd-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 129 (304)
T 2ynn_A 57 PVRAGKFIARKNWIIVGSDDFRIRVFN-------YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN 129 (304)
T ss_dssp CEEEEEEEGGGTEEEEEETTSEEEEEE-------TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT
T ss_pred cEEEEEEeCCCCEEEEECCCCEEEEEE-------CCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC
Confidence 466889999999988876 77774 446677889999999999999998865 899999999999999765
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC--C-cEEEEe
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD--Y-RYIMSG 160 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~l~~~ 160 (183)
.. +...+.+|...|.+++|+|.++..+++|+.|+.|++||+++.........+|...+..+.|.+ + .+|+++
T Consensus 130 ~~-----~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~ 204 (304)
T 2ynn_A 130 WA-----LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITA 204 (304)
T ss_dssp TE-----EEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEE
T ss_pred cc-----hhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEE
Confidence 32 245678999999999999966789999999999999999887764555567778899999984 3 799999
Q ss_pred cCCCcEEEEEecCCCC
Q psy2113 161 GQDNSVRVFKTKHQPK 176 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~~ 176 (183)
+.|+.|++||+++++.
T Consensus 205 s~D~~i~iWd~~~~~~ 220 (304)
T 2ynn_A 205 SDDLTIKIWDYQTKSC 220 (304)
T ss_dssp ETTSEEEEEETTTTEE
T ss_pred cCCCeEEEEeCCCCcc
Confidence 9999999999987643
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.9e-26 Score=166.09 Aligned_cols=156 Identities=15% Similarity=0.161 Sum_probs=117.8
Q ss_pred eEEEEEeecCcEEEEEE------eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCC
Q psy2113 10 TLGVIFMTVGALLTLTN------IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~ 83 (183)
.-.++|+|+|.+++++. +++|++ ...+++..+. |.+.|.+++|+|++.+++.+.++.+.+|+..++
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~-------~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~ 207 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDP-------SDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGSSLEVISTVTG 207 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEET-------TTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSSCEEEEETTTC
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeEC-------CCCcEEEEeC-CCCceEEEEEccCCceEEeccceeEEEEEeccC
Confidence 34689999999886543 677743 4555666665 777899999999887544444556666665543
Q ss_pred CCc------------------------------c----------------CceeEEEeecCCcceEEEEEecCCCCEEEE
Q psy2113 84 GMK------------------------------K----------------GAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 117 (183)
Q Consensus 84 ~~~------------------------------~----------------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 117 (183)
... . .......+.+|...|++++|+| ++++|++
T Consensus 208 ~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~las 286 (365)
T 4h5i_A 208 SCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVL 286 (365)
T ss_dssp CEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEE
T ss_pred cceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEE
Confidence 321 0 0001223557888999999999 8999999
Q ss_pred EeCCCeEEEEeCCCCCcceEE-eccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 118 ASFDNSVKLWDLRSPKVPLFD-MLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 118 ~~~dg~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
|+.|+.|++||+++++. +.. +.+|...|++++|+|+ .+|++|+.|++|+|||+....
T Consensus 287 gs~D~~V~iwd~~~~~~-~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~ 345 (365)
T 4h5i_A 287 ASNDNSIALVKLKDLSM-SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNY 345 (365)
T ss_dssp EETTSCEEEEETTTTEE-EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTT
T ss_pred EcCCCEEEEEECCCCcE-EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 99999999999999876 444 5789999999999976 899999999999999996543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-26 Score=163.34 Aligned_cols=158 Identities=23% Similarity=0.362 Sum_probs=130.1
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
-.+.+++|+|++.+++.+. +++|+.. ....+.+..+.+|.+.|.+++|+|++. |++|+.|+.|++||++.
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~-----~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~ 136 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKN-----QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEEC-----CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECT
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEcc-----CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCC
Confidence 3567899999999998876 5666432 122345678899999999999998865 89999999999999976
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc-ceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV-PLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
... ......+.+|...|.+++|+| ++.+|++++.|+.|++||.++... ....+.+|...|++++|+|+ .+|+++
T Consensus 137 ~~~---~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~ 212 (345)
T 3fm0_A 137 EDE---YECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASC 212 (345)
T ss_dssp TSC---EEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred CCC---eEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEE
Confidence 542 122456778999999999999 889999999999999999987642 24678899999999999976 899999
Q ss_pred cCCCcEEEEEecCC
Q psy2113 161 GQDNSVRVFKTKHQ 174 (183)
Q Consensus 161 ~~dg~i~iwd~~~~ 174 (183)
+.|++|++||....
T Consensus 213 s~D~~v~iW~~~~~ 226 (345)
T 3fm0_A 213 SDDRTVRIWRQYLP 226 (345)
T ss_dssp ETTSCEEEEEEECT
T ss_pred eCCCeEEEeccccC
Confidence 99999999997654
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=165.65 Aligned_cols=157 Identities=16% Similarity=0.232 Sum_probs=132.1
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEEEEcC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKIWDAE 81 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vwd~~ 81 (183)
-.+.+++|+|++..++.+. +++| +....+.+..+.+|...|++++|++++ .+++++.|+.|++||++
T Consensus 140 ~~V~~v~~spdg~~l~sgs~dg~v~iw-------d~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~ 212 (357)
T 4g56_B 140 DIVKTLSVFSDGTQAVSGGKDFSVKVW-------DLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTR 212 (357)
T ss_dssp SCEEEEEECSSSSEEEEEETTSCEEEE-------ETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTT
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEE-------ECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECC
Confidence 3577899999999988876 6666 445677888999999999999999765 48999999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMS 159 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~ 159 (183)
+++... ......+...+.+++|+|+++.++++|+.|+.|++||+++++. ...+.+|...|++++|+|+ .+|++
T Consensus 213 ~~~~~~----~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~l~~sp~~~~~las 287 (357)
T 4g56_B 213 KPKPAT----RIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS-AQTSAVHSQNITGLAYSYHSSPFLAS 287 (357)
T ss_dssp SSSCBC----BCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG-CEEECCCSSCEEEEEECSSSSCCEEE
T ss_pred CCceee----eeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcE-eEEEeccceeEEEEEEcCCCCCEEEE
Confidence 766522 2233457788999999996678999999999999999999876 7888999999999999964 57999
Q ss_pred ecCCCcEEEEEecCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~ 176 (183)
|+.|++|+|||+++++.
T Consensus 288 gs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 288 ISEDCTVAVLDADFSEV 304 (357)
T ss_dssp EETTSCEEEECTTSCEE
T ss_pred EeCCCEEEEEECCCCcE
Confidence 99999999999987643
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-26 Score=165.54 Aligned_cols=153 Identities=25% Similarity=0.501 Sum_probs=134.1
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
-.+.+++|+|++.+++.+. +++|++ ...+.+..+.+|...|.+++|+|++. +++|+.|++|++||+++
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~-------~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~ 223 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDF-------QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 223 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEET-------TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeC-------CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC
Confidence 3567889999999988876 666743 45567778899999999999998765 89999999999999988
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC---------
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD--------- 153 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--------- 153 (183)
+.. ...+.+|...|.++.++| ++.++++|+.|+.|++||+++.+. ...+.+|...|.+++|+|
T Consensus 224 ~~~------~~~~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~ 295 (410)
T 1vyh_C 224 GYC------VKTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKEC-KAELREHRHVVECISWAPESSYSSISE 295 (410)
T ss_dssp CCE------EEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECCSCGGGGGGG
T ss_pred CcE------EEEEeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCce-eeEecCCCceEEEEEEcCcccccchhh
Confidence 765 667889999999999999 899999999999999999999876 778899999999999997
Q ss_pred ------------CcEEEEecCCCcEEEEEecCCC
Q psy2113 154 ------------YRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 154 ------------~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+.++++|+.|+.|++||++++.
T Consensus 296 ~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 296 ATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp CCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred hccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 4589999999999999998764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=161.94 Aligned_cols=158 Identities=23% Similarity=0.339 Sum_probs=132.3
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~ 84 (183)
..+++|+|++..++++. +.+|.+.... ..........+.+|.+.|.++.|+|++ .|++++.|++|++||+++++
T Consensus 109 v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~ 187 (354)
T 2pbi_B 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDK-NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187 (354)
T ss_dssp CCEEEECTTSSEEEEESTTSEEEEEECCCCT-TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEECCCCCEEEEeeCCCCEEEEEEeccc-cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe
Confidence 56789999999998876 5566543211 112234567788999999999999876 59999999999999998876
Q ss_pred CccCceeEEEeecCCcceEEEEEecC-CCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPI-DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQ 162 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~ 162 (183)
. ...+.+|...|.+++++|. +++++++|+.||.|++||+++++. +..+.+|...|++++|+|+ .+|++++.
T Consensus 188 ~------~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~-~~~~~~h~~~v~~v~~~p~~~~l~s~s~ 260 (354)
T 2pbi_B 188 L------LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC-VQAFETHESDVNSVRYYPSGDAFASGSD 260 (354)
T ss_dssp E------EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred E------EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE-EEEecCCCCCeEEEEEeCCCCEEEEEeC
Confidence 5 6678899999999999884 357999999999999999999886 7788999999999999976 89999999
Q ss_pred CCcEEEEEecCCC
Q psy2113 163 DNSVRVFKTKHQP 175 (183)
Q Consensus 163 dg~i~iwd~~~~~ 175 (183)
|++|++||++..+
T Consensus 261 D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 261 DATCRLYDLRADR 273 (354)
T ss_dssp TSCEEEEETTTTE
T ss_pred CCeEEEEECCCCc
Confidence 9999999998754
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.8e-26 Score=162.25 Aligned_cols=148 Identities=18% Similarity=0.243 Sum_probs=125.7
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
..+.+++|+|++.+++.+. +++|++ .....+..+.+|...|.+++|+|++. |++|+.|+.|++||++.
T Consensus 185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~-------~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~ 257 (340)
T 1got_B 185 GDVMSLSLAPDTRLFVSGACDASAKLWDV-------REGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA 257 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEET-------TTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEEC-------CCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC
Confidence 3567889999999888776 677743 45667788999999999999998865 89999999999999987
Q ss_pred CCCccCceeEEEee--cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEE
Q psy2113 83 GGMKKGAIVKSTFS--SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 83 ~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~ 159 (183)
.+. ...+. .+...|.+++|+| ++.++++|+.|+.|++||+.+.+. ...+.+|...|.+++|+|+ .+|++
T Consensus 258 ~~~------~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~d~~i~vwd~~~~~~-~~~~~~h~~~v~~~~~s~dg~~l~s 329 (340)
T 1got_B 258 DQE------LMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVAT 329 (340)
T ss_dssp TEE------EEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSCEEE
T ss_pred CcE------EEEEccCCcccceEEEEECC-CCCEEEEECCCCeEEEEEcccCcE-eeEeecCCCcEEEEEEcCCCCEEEE
Confidence 653 22332 2335799999999 899999999999999999998876 7788999999999999976 89999
Q ss_pred ecCCCcEEEEE
Q psy2113 160 GGQDNSVRVFK 170 (183)
Q Consensus 160 ~~~dg~i~iwd 170 (183)
|+.||.|++||
T Consensus 330 ~s~D~~i~iWd 340 (340)
T 1got_B 330 GSWDSFLKIWN 340 (340)
T ss_dssp EETTSCEEEEC
T ss_pred EcCCccEEecC
Confidence 99999999997
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=159.15 Aligned_cols=153 Identities=24% Similarity=0.393 Sum_probs=130.7
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
.+.+++|+|++.+++.+. +++|+ ....+.+..+.+|...|.+++|+|++. +++|+.|++|++||++..
T Consensus 67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~ 139 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASWDKTLRLWD-------VATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQ 139 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEE-------TTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSC
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEE-------CCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 456789999999988776 77784 446677888999999999999998765 899999999999999743
Q ss_pred CCccCceeEEEeecCCcceEEEEEecC-----CCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPI-----DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~-----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
. ...+.+|...|.+++++|. ++..+++++.|+.|++||+++.+. ...+.+|...|.+++|+|+ .+|
T Consensus 140 ~-------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~h~~~v~~~~~sp~g~~l 211 (319)
T 3frx_A 140 C-------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI-EADFIGHNSNINTLTASPDGTLI 211 (319)
T ss_dssp E-------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEE-EEEECCCCSCEEEEEECTTSSEE
T ss_pred e-------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchh-heeecCCCCcEEEEEEcCCCCEE
Confidence 2 5577889999999999983 234899999999999999998765 6778899999999999976 899
Q ss_pred EEecCCCcEEEEEecCCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~~ 176 (183)
++++.||.|++||+++++.
T Consensus 212 ~s~~~dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 212 ASAGKDGEIMLWNLAAKKA 230 (319)
T ss_dssp EEEETTCEEEEEETTTTEE
T ss_pred EEEeCCCeEEEEECCCCcE
Confidence 9999999999999987653
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=160.77 Aligned_cols=155 Identities=21% Similarity=0.419 Sum_probs=127.3
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCcc---ceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKT---PLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
.+..++|+|++.+++.+. +++|++. ... ......+|...|.+++|+|++. |++|+.|+.+++||.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~-------~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~ 90 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTE-------GDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEE-------TTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcC-------CCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEc
Confidence 577899999999998876 7777542 221 1122368999999999998875 899999999999998
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc--ceEEeccCCCcEEEEEecCC-cEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--PLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
..... .....+.+|...|.+++|+| ++++|++|+.|+.|++||+++... ....+.+|...|.+++|+|+ .+|
T Consensus 91 ~~~~~----~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l 165 (345)
T 3fm0_A 91 NQDDF----ECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL 165 (345)
T ss_dssp CCC-E----EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred cCCCe----EEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence 76532 12556789999999999999 899999999999999999987643 24567889999999999976 899
Q ss_pred EEecCCCcEEEEEecCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~ 175 (183)
++++.|+.|++||++.++
T Consensus 166 ~s~s~d~~i~~w~~~~~~ 183 (345)
T 3fm0_A 166 ASASYDDTVKLYREEEDD 183 (345)
T ss_dssp EEEETTSCEEEEEEETTE
T ss_pred EEEeCCCcEEEEEecCCC
Confidence 999999999999988653
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-25 Score=154.66 Aligned_cols=154 Identities=23% Similarity=0.412 Sum_probs=131.3
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
..+.+++|+|++..++++. +++|++ ...+.+..+.+|...|.++.|+|++. +++|+.|+.|++||+++
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~ 138 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDV-------SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT 138 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEET-------TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEEC-------CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC
Confidence 3467889999999988875 677743 45667788999999999999998765 88999999999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
.+. ...+..|...|.+++|+| ++.++++++.||.|++||+++++........+...+..++|+|+ .++++++
T Consensus 139 ~~~------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 211 (312)
T 4ery_A 139 GKC------LKTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAAT 211 (312)
T ss_dssp CCE------EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEE
T ss_pred CEE------EEEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEc
Confidence 764 567788999999999999 88999999999999999999887633344566778999999976 8999999
Q ss_pred CCCcEEEEEecCCC
Q psy2113 162 QDNSVRVFKTKHQP 175 (183)
Q Consensus 162 ~dg~i~iwd~~~~~ 175 (183)
.||.|++||+++++
T Consensus 212 ~d~~i~iwd~~~~~ 225 (312)
T 4ery_A 212 LDNTLKLWDYSKGK 225 (312)
T ss_dssp TTTEEEEEETTTTE
T ss_pred CCCeEEEEECCCCc
Confidence 99999999998764
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=155.91 Aligned_cols=160 Identities=24% Similarity=0.344 Sum_probs=117.8
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEE-ec-cCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITL-KG-HKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
.-.+.+++|+|+ +++.+. +++|++.. ........+ .+ |.+.|.+++|+|++. |++|+.|++|++||
T Consensus 14 ~~~v~~~~~s~~--~las~~~D~~i~lw~~~~-----~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~ 86 (330)
T 2hes_X 14 KEKIWSFDFSQG--ILATGSTDRKIKLVSVKY-----DDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWA 86 (330)
T ss_dssp SSCEEEEEEETT--EEEEEESSSCEEEEECSS-----SCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred CCceeeeccCCC--EEEEEcCCCEEEEEEecC-----CCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 345677888887 555544 77776532 112334445 34 999999999998876 88999999999999
Q ss_pred cCCCCCc-cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC---cceEEeccCCCcEEEEEecCC-
Q psy2113 80 AELGGMK-KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK---VPLFDMLGHEDKVMCVNWSDY- 154 (183)
Q Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~---~~~~~~~~~~~~v~~~~~~~~- 154 (183)
++..... ....+...+.+|...|.+++|+| ++++|++|+.|+.|++||++... ..+..+.+|...|.+++|+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 165 (330)
T 2hes_X 87 KEESADRTFEMDLLAIIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE 165 (330)
T ss_dssp C-------CCCEEEEEEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS
T ss_pred cccCcCccccceeEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC
Confidence 8643211 12233556789999999999999 88999999999999999995432 225678899999999999976
Q ss_pred cEEEEecCCCcEEEEEecCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~ 174 (183)
.+|++++.|++|++||++.+
T Consensus 166 ~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 166 ALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp SEEEEEETTSCEEEEEEETT
T ss_pred CEEEEEcCCCeEEEEECCCC
Confidence 89999999999999998764
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-24 Score=159.05 Aligned_cols=152 Identities=26% Similarity=0.456 Sum_probs=125.3
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
.+.+++|+|++..++++. +++|+ ....+.+..+.+|...|.+++|+|++. |++++.|++|++||++++
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd-------~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~ 197 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWD-------IENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG 197 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEE-------TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEE-------CCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC
Confidence 367899999999998876 66674 345667788999999999999998765 899999999999999876
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe-------ccCCCcEEEEEecCC-c
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM-------LGHEDKVMCVNWSDY-R 155 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~-~ 155 (183)
+. ...+ .+...+.+++|+|.++.++++|+.|+.|++||++++.. +..+ .+|...|.+++|+|+ .
T Consensus 198 ~~------~~~~-~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~-~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 198 QC------SLTL-SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL-VERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp EE------EEEE-ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCE-EEEEC------CCCSSCEEEEEECTTSS
T ss_pred ee------EEEE-EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcE-EEeecccccCCCCCCCCEEEEEECCCCC
Confidence 54 3333 36678999999997788999999999999999998765 4444 578999999999965 8
Q ss_pred EEEEecCCCcEEEEEecCCC
Q psy2113 156 YIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 156 ~l~~~~~dg~i~iwd~~~~~ 175 (183)
+|++++.||.|++||+++..
T Consensus 270 ~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 270 SVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEEEEETTSEEEEEEC----
T ss_pred EEEEEeCCCEEEEEECCCCC
Confidence 99999999999999998754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-26 Score=166.18 Aligned_cols=160 Identities=26% Similarity=0.377 Sum_probs=130.6
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEEEEcCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vwd~~~~ 83 (183)
+.+++|+|++..++.+. +++|++...............+.+|.+.|.++.|.|++ .|++|+.|++|++||++++
T Consensus 111 v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~ 190 (380)
T 3iz6_a 111 VMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG 190 (380)
T ss_dssp CCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC
T ss_pred EEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC
Confidence 45678999999998876 66676543322222334455678999999999999753 4999999999999999887
Q ss_pred CCccCceeEEEe-----ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE
Q psy2113 84 GMKKGAIVKSTF-----SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 84 ~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
+. ...+ .+|...|.+++++|.+++++++|+.|+.|++||++.....+..+.+|...|++++|+|+ .+|
T Consensus 191 ~~------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l 264 (380)
T 3iz6_a 191 QR------ISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRF 264 (380)
T ss_dssp CE------EEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEE
T ss_pred cE------EEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeE
Confidence 64 3333 57889999999988678899999999999999998654457889999999999999976 899
Q ss_pred EEecCCCcEEEEEecCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~ 175 (183)
++++.||+|++||+++++
T Consensus 265 ~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 265 GTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp EEECSSSCEEEEETTTTE
T ss_pred EEEcCCCeEEEEECCCCc
Confidence 999999999999998764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=169.84 Aligned_cols=151 Identities=23% Similarity=0.321 Sum_probs=127.3
Q ss_pred ceeEEEEEeecCcEEEEEE--------eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEE
Q psy2113 8 ILTLGVIFMTVGALLTLTN--------IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKI 77 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~v 77 (183)
..+.+++|+|++..+++.. +.+|+ .......+.+|.+.|++++|+|++ .|++|+.|++|++
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd---------~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~l 174 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFD---------TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI 174 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETT---------TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred CceEEEEECCCCCEEEEEECCCCceeEEEEee---------CCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEE
Confidence 3567899999999988654 34443 233445678999999999999986 4999999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec-------cCCCcEEEEE
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML-------GHEDKVMCVN 150 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-------~~~~~v~~~~ 150 (183)
||..+.+. ...+.+|...|.+++|+| ++++|++++.|+.|++||+++++. ...+. +|...|.+++
T Consensus 175 wd~~~~~~------~~~l~~H~~~V~~v~fsp-dg~~las~s~D~~i~lwd~~~g~~-~~~~~~~~~~~~~h~~~V~~v~ 246 (611)
T 1nr0_A 175 FEGPPFKF------KSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLT 246 (611)
T ss_dssp EETTTBEE------EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEE
T ss_pred EECCCCeE------eeeeccccCceEEEEECC-CCCEEEEEECCCcEEEEECCCCcE-eeeeccccccccccCCCEEEEE
Confidence 99876543 567889999999999999 899999999999999999998875 45553 7999999999
Q ss_pred ecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 151 WSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 151 ~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
|+|+ .+|++++.|++|++||+++++
T Consensus 247 ~spdg~~l~s~s~D~~v~lWd~~~~~ 272 (611)
T 1nr0_A 247 WSPDGTKIASASADKTIKIWNVATLK 272 (611)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred ECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 9976 899999999999999998764
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.6e-25 Score=155.58 Aligned_cols=158 Identities=25% Similarity=0.369 Sum_probs=130.4
Q ss_pred eceeEEEEEeecC-cEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 7 GILTLGVIFMTVG-ALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
.-.+.+++|+|++ .+++.+. +++|++... ......++..+.+|...|.+++|+|++. +++|+.|++|++||+
T Consensus 17 ~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~--~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~ 94 (319)
T 3frx_A 17 NGWVTSLATSAGQPNLLLSASRDKTLISWKLTGD--DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDV 94 (319)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEE--TTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred cceEEEEEccCCCccEEEEecCCccEEEecCCCC--CccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 3456788999965 6666654 777865321 1122356778999999999999998876 889999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC------
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY------ 154 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~------ 154 (183)
++++. ...+.+|...|.+++|+| ++.++++|+.|+.|++||++.. . +..+.+|...|.++.|.|.
T Consensus 95 ~~~~~------~~~~~~h~~~v~~~~~~~-~~~~l~s~s~D~~i~vwd~~~~-~-~~~~~~h~~~v~~~~~~~~~~~~~~ 165 (319)
T 3frx_A 95 ATGET------YQRFVGHKSDVMSVDIDK-KASMIISGSRDKTIKVWTIKGQ-C-LATLLGHNDWVSQVRVVPNEKADDD 165 (319)
T ss_dssp TTTEE------EEEEECCSSCEEEEEECT-TSCEEEEEETTSCEEEEETTSC-E-EEEECCCSSCEEEEEECCC------
T ss_pred CCCCe------eEEEccCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEECCCC-e-EEEEeccCCcEEEEEEccCCCCCCC
Confidence 88764 667889999999999999 8899999999999999999754 3 6788899999999999863
Q ss_pred -cEEEEecCCCcEEEEEecCCC
Q psy2113 155 -RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 155 -~~l~~~~~dg~i~iwd~~~~~ 175 (183)
..+++++.|+.|++||+++.+
T Consensus 166 ~~~l~s~~~d~~i~~wd~~~~~ 187 (319)
T 3frx_A 166 SVTIISAGNDKMVKAWNLNQFQ 187 (319)
T ss_dssp CCEEEEEETTSCEEEEETTTTE
T ss_pred ccEEEEEeCCCEEEEEECCcch
Confidence 379999999999999998754
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-24 Score=166.40 Aligned_cols=154 Identities=18% Similarity=0.257 Sum_probs=126.6
Q ss_pred ceeEEEEEeecCcE-EEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 8 ILTLGVIFMTVGAL-LTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
-.+.+++|+|++.. ++.+. +++|+. ...+....+.+|.+.|.+++|+|++. |++++.|++|++||+.
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~-------~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~ 220 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEG-------PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV 220 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEET-------TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEEC-------CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence 35678999999863 55544 666743 34566778999999999999999876 8899999999999998
Q ss_pred CCCCccCceeEEEee-------cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcc-------------------
Q psy2113 82 LGGMKKGAIVKSTFS-------SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP------------------- 135 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~-------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~------------------- 135 (183)
+++. ...+. +|...|.+++|+| ++.+|++++.|++|++||+++++..
T Consensus 221 ~g~~------~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (611)
T 1nr0_A 221 DGTK------TGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWT 293 (611)
T ss_dssp TCCE------EEECBCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEEC
T ss_pred CCcE------eeeeccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEc
Confidence 7664 33442 7999999999999 8999999999999999999876431
Q ss_pred -----------------------eEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 136 -----------------------LFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 136 -----------------------~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
...+.+|...|++++|+|+ .+|++++.|+.|++||+++++
T Consensus 294 ~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 294 KQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp SSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred CCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 1234579999999999975 899999999999999998764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-24 Score=154.56 Aligned_cols=161 Identities=16% Similarity=0.242 Sum_probs=134.4
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
.-.+.+++|+|++..++.+. +++|+. ...+....+..|...|.+++|+|++. +++++.|+.+++|++.
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~-------~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~ 136 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDS-------FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLT 136 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEET-------TTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEEC-------CCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEe
Confidence 34578899999999988876 777743 34556677888999999999999876 8899999999999987
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC---CcEEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD---YRYIM 158 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~l~ 158 (183)
.............+..|...|.+++|+| ++..+++++.|+.|++||+++++. +..+.+|...|.+++|++ +.+|+
T Consensus 137 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~s~D~~v~lwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~g~~l~ 214 (354)
T 2pbi_B 137 FDKNENMAAKKKSVAMHTNYLSACSFTN-SDMQILTASGDGTCALWDVESGQL-LQSFHGHGADVLCLDLAPSETGNTFV 214 (354)
T ss_dssp CCTTCCSGGGCEEEEECSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred ccccccccccceeeeccCCcEEEEEEeC-CCCEEEEEeCCCcEEEEeCCCCeE-EEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence 5433222223456778999999999999 888999999999999999999876 788899999999999985 37999
Q ss_pred EecCCCcEEEEEecCCCC
Q psy2113 159 SGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~~ 176 (183)
+|+.||.|++||+++++.
T Consensus 215 sgs~Dg~v~~wd~~~~~~ 232 (354)
T 2pbi_B 215 SGGCDKKAMVWDMRSGQC 232 (354)
T ss_dssp EEETTSCEEEEETTTCCE
T ss_pred EEeCCCeEEEEECCCCcE
Confidence 999999999999988653
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.5e-25 Score=159.06 Aligned_cols=155 Identities=17% Similarity=0.306 Sum_probs=125.1
Q ss_pred ceeEEEEEee-cCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 8 ILTLGVIFMT-VGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 8 ~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
..+.+++|++ ++.+++.+. +++|++. .....+..+.+|.+.|++++|+|++. |++|+.|++|++||++
T Consensus 206 ~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~------~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~ 279 (380)
T 3iz6_a 206 ADVLSLSINSLNANMFISGSCDTTVRLWDLR------ITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMR 279 (380)
T ss_dssp SCEEEEEECSSSCCEEEEEETTSCEEEEETT------TTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETT
T ss_pred cCeEEEEeecCCCCEEEEEECCCeEEEEECC------CCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECC
Confidence 3567778876 677777765 6777542 23456778899999999999999875 8999999999999998
Q ss_pred CCCCccCceeEEEeecC-------CcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe----ccCCCcEEEEE
Q psy2113 82 LGGMKKGAIVKSTFSSH-------KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM----LGHEDKVMCVN 150 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~v~~~~ 150 (183)
++.. ...+..+ ...|.+++|+| ++.++++|+.||.|++||+.+++. ...+ .+|...|++++
T Consensus 280 ~~~~------~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~g~~dg~i~vwd~~~~~~-~~~~~~~~~~h~~~v~~l~ 351 (380)
T 3iz6_a 280 TGHQ------LQVYNREPDRNDNELPIVTSVAFSI-SGRLLFAGYSNGDCYVWDTLLAEM-VLNLGTLQNSHEGRISCLG 351 (380)
T ss_dssp TTEE------EEEECCCCSSSCCSSCSCSEEEECS-SSSEEEEECTTSCEEEEETTTCCE-EEEECCSCSSCCCCCCEEE
T ss_pred CCcE------EEEecccccccccccCceEEEEECC-CCCEEEEEECCCCEEEEECCCCce-EEEEecccCCCCCceEEEE
Confidence 7654 3333322 23489999999 899999999999999999988775 4444 68999999999
Q ss_pred ecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 151 WSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 151 ~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|+|+ .+|++|+.||.|++|++...++
T Consensus 352 ~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 352 LSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp ECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred ECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 9966 8999999999999999987654
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-24 Score=151.17 Aligned_cols=160 Identities=21% Similarity=0.324 Sum_probs=126.8
Q ss_pred eceeEEEEEeec--CcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--C-eEEEEeCCCeEEE
Q psy2113 7 GILTLGVIFMTV--GALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--D-EIITSSWDHTLKI 77 (183)
Q Consensus 7 ~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~~~d~~v~v 77 (183)
.-.+.+++|++. +..++.+. +++|++.. .....+..+.+|...|.+++|+|+ + .|++++.|+.|++
T Consensus 53 ~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~ 127 (297)
T 2pm7_B 53 EGPVWRVDWAHPKFGTILASCSYDGKVMIWKEEN-----GRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127 (297)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSS-----SCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred cCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCC-----CceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEE
Confidence 345678899864 77777765 77786532 122355678889999999999975 4 5899999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCC------------CCEEEEEeCCCeEEEEeCCCCCc---ceEEeccC
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID------------PQLFVSASFDNSVKLWDLRSPKV---PLFDMLGH 142 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~------------~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~ 142 (183)
||++...... ...+.+|...|.+++|+|+. +++|++|+.|+.|++||+++... ....+.+|
T Consensus 128 wd~~~~~~~~----~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H 203 (297)
T 2pm7_B 128 VEFKENGTTS----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (297)
T ss_dssp EEBCSSSCBC----CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEecCCCcee----eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC
Confidence 9998653211 23567899999999999932 46999999999999999987652 24577899
Q ss_pred CCcEEEEEecCC----cEEEEecCCCcEEEEEecCCC
Q psy2113 143 EDKVMCVNWSDY----RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 143 ~~~v~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~ 175 (183)
...|.+++|+|+ .+|++++.|++|++||++...
T Consensus 204 ~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~ 240 (297)
T 2pm7_B 204 SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ 240 (297)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC
Confidence 999999999975 689999999999999998743
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.93 E-value=5.1e-24 Score=152.95 Aligned_cols=153 Identities=19% Similarity=0.392 Sum_probs=123.8
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
.+.+++|+|++.+++.+. +++|++ ...+.+..+.+|.+.|.+++|+|++. |++++.|+.|++||+...
T Consensus 78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~-------~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 78 FVSDLALSQENCFAISSSWDKTLRLWDL-------RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSEEEEEET-------TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEEC-------CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 467889999999988765 777744 45667788999999999999998865 899999999999998732
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCC----------CEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDP----------QLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD 153 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----------~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 153 (183)
... .......|...|.+++|+| .+ .++++++.|+.|++||.+. . ....+.+|...|.+++|+|
T Consensus 151 ~~~----~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~-~-~~~~~~~h~~~v~~~~~s~ 223 (343)
T 2xzm_R 151 CKF----SSAEKENHSDWVSCVRYSP-IMKSANKVQPFAPYFASVGWDGRLKVWNTNF-Q-IRYTFKAHESNVNHLSISP 223 (343)
T ss_dssp EEE----ECCTTTSCSSCEEEEEECC-CCCSCSCCCSSCCEEEEEETTSEEEEEETTT-E-EEEEEECCSSCEEEEEECT
T ss_pred cee----eeecccCCCceeeeeeecc-ccccccccCCCCCEEEEEcCCCEEEEEcCCC-c-eeEEEcCccccceEEEECC
Confidence 210 0111236888999999999 54 6899999999999999543 3 2667889999999999997
Q ss_pred C-cEEEEecCCCcEEEEEecCCC
Q psy2113 154 Y-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 154 ~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+ .+|++|+.||.|++||++...
T Consensus 224 ~g~~l~sgs~dg~v~iwd~~~~~ 246 (343)
T 2xzm_R 224 NGKYIATGGKDKKLLIWDILNLT 246 (343)
T ss_dssp TSSEEEEEETTCEEEEEESSCCS
T ss_pred CCCEEEEEcCCCeEEEEECCCCc
Confidence 6 899999999999999996543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=164.54 Aligned_cols=145 Identities=29% Similarity=0.469 Sum_probs=124.3
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
-...+++|+|++..++.+. +.+|+. ..+.+..+.+|...|.+++|+|++. |++++.|+.|++||..
T Consensus 427 ~~v~~~~~s~d~~~l~~~~~d~~v~~w~~--------~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~- 497 (577)
T 2ymu_A 427 SSVWGVAFSPDDQTIASASDDKTVKLWNR--------NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN- 497 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEET--------TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-
T ss_pred CCeEEEEECCCCCEEEEEcCCCEEEEEEC--------CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-
Confidence 3456789999999988765 555642 4466788899999999999999876 8899999999999964
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
++. ...+.+|...|++++|+| ++++|++++.||.|++||. +++. +..+.+|.+.|++++|+|+ .+|++++
T Consensus 498 ~~~------~~~~~~h~~~v~~l~~s~-dg~~l~s~~~dg~v~lwd~-~~~~-~~~~~~h~~~v~~~~fs~dg~~l~s~~ 568 (577)
T 2ymu_A 498 GQL------LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQL-LQTLTGHSSSVWGVAFSPDGQTIASAS 568 (577)
T ss_dssp SCE------EEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TSCE-EEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred CCE------EEEEeCCCCCEEEEEEcC-CCCEEEEEECcCEEEEEeC-CCCE-EEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 332 567889999999999999 8899999999999999996 4444 7888999999999999966 8999999
Q ss_pred CCCcEEEEE
Q psy2113 162 QDNSVRVFK 170 (183)
Q Consensus 162 ~dg~i~iwd 170 (183)
.|+.|++||
T Consensus 569 ~D~~i~~Wd 577 (577)
T 2ymu_A 569 SDKTVKLWN 577 (577)
T ss_dssp TTSCEEEEC
T ss_pred CCCEEEEeC
Confidence 999999997
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-24 Score=155.07 Aligned_cols=158 Identities=24% Similarity=0.405 Sum_probs=123.8
Q ss_pred eeEEEEEee-cCcEEEEEE----eccCCCCcccccccCccceEEE-------eccCCCeeEEEEccCCe-EEEEeCCCeE
Q psy2113 9 LTLGVIFMT-VGALLTLTN----IEVTSLPSFFQLILQKTPLITL-------KGHKEAISAVQWTAVDE-IITSSWDHTL 75 (183)
Q Consensus 9 ~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~-l~s~~~d~~v 75 (183)
...+++|+| ++.+++++. +++|++. ....+..+ .+|...|.+++|+|++. |++|+.|+.|
T Consensus 208 ~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~-------~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v 280 (393)
T 1erj_A 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSE-------TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSV 280 (393)
T ss_dssp CEEEEEECSTTCCEEEEEETTSCEEEEETT-------TCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CcEEEEEECCCCCEEEEEcCCCcEEEEECC-------CCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEE
Confidence 356788999 888888776 6667543 23333333 67999999999998876 8999999999
Q ss_pred EEEEcCCCCCcc------CceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEE
Q psy2113 76 KIWDAELGGMKK------GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCV 149 (183)
Q Consensus 76 ~vwd~~~~~~~~------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 149 (183)
++||++...... .......+.+|...|.+++|+| ++.++++|+.|+.|++||.++++. +..+.+|...|.++
T Consensus 281 ~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~iwd~~~~~~-~~~l~~h~~~v~~v 358 (393)
T 1erj_A 281 KLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISV 358 (393)
T ss_dssp EEEEC---------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEE
T ss_pred EEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEEEECCCCeE-EEEECCCCCCEEEE
Confidence 999997643211 1123446778999999999999 888999999999999999999876 77889999999999
Q ss_pred EecC-------CcEEEEecCCCcEEEEEecCCC
Q psy2113 150 NWSD-------YRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 150 ~~~~-------~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+|++ +.+|++|+.||+|++|+++...
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~~ 391 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKKIA 391 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEEC-
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECcccccC
Confidence 9985 3789999999999999987643
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.93 E-value=6e-24 Score=152.55 Aligned_cols=155 Identities=28% Similarity=0.430 Sum_probs=125.0
Q ss_pred eeEEEEE-----ee-cCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEE
Q psy2113 9 LTLGVIF-----MT-VGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKI 77 (183)
Q Consensus 9 ~~~~~~~-----~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~v 77 (183)
.+.+++| ++ ++.+++.+. +++|++...........+...+.+|...|.+++|+|++. +++++.|++|++
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~l 102 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRL 102 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEE
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEE
Confidence 4567777 65 888888776 778876432222223456678899999999999998765 789999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe---ccCCCcEEEEEecCC
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM---LGHEDKVMCVNWSDY 154 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~ 154 (183)
||+++++. ...+.+|...|.+++|+| +++++++++.|+.|++||+.... .... ..|...|.+++|+|.
T Consensus 103 wd~~~~~~------~~~~~~h~~~v~~v~~sp-~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~ 173 (343)
T 2xzm_R 103 WDLRTGTT------YKRFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSPI 173 (343)
T ss_dssp EETTSSCE------EEEEECCCSCEEEEEECS-STTEEEEEETTSCEEEEESSSCE--EEECCTTTSCSSCEEEEEECCC
T ss_pred EECCCCcE------EEEEcCCCCcEEEEEECC-CCCEEEEEcCCCEEEEEeccCCc--eeeeecccCCCceeeeeeeccc
Confidence 99988764 667889999999999999 88999999999999999998432 2222 378899999999964
Q ss_pred -----------cEEEEecCCCcEEEEEec
Q psy2113 155 -----------RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 155 -----------~~l~~~~~dg~i~iwd~~ 172 (183)
.++++++.||.|++||.+
T Consensus 174 ~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 202 (343)
T 2xzm_R 174 MKSANKVQPFAPYFASVGWDGRLKVWNTN 202 (343)
T ss_dssp CCSCSCCCSSCCEEEEEETTSEEEEEETT
T ss_pred cccccccCCCCCEEEEEcCCCEEEEEcCC
Confidence 589999999999999943
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-23 Score=149.20 Aligned_cols=166 Identities=20% Similarity=0.333 Sum_probs=130.7
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc---CCeEEEEeCCCeEEEEE
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA---VDEIITSSWDHTLKIWD 79 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~l~s~~~d~~v~vwd 79 (183)
.-.+.+++|+|++.+++++. +++|++... ....+....+.+|...|.+++|+| +..|++++.|+.|++||
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd 87 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKD---TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSS---SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCC---CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence 34577889999999988876 777754321 112245677889999999999997 34599999999999999
Q ss_pred cCCCCCcc---CceeEEEeecCCcceEEEEEecCC--CCEEEEEeCCCeEEEEeCCCCCc--------------------
Q psy2113 80 AELGGMKK---GAIVKSTFSSHKEWVQSVRWSPID--PQLFVSASFDNSVKLWDLRSPKV-------------------- 134 (183)
Q Consensus 80 ~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~vwd~~~~~~-------------------- 134 (183)
++...... .......+..|...|.+++|+| + +.++++++.||.|++||+++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (351)
T 3f3f_A 88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAP-AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH 166 (351)
T ss_dssp ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECC-GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred cCCCcccccccCcceeeeecccCCceeEEEEcC-CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence 98764321 1133566778999999999999 7 88999999999999999876542
Q ss_pred ---------------------------------------ceEEeccCCCcEEEEEecCC-----cEEEEecCCCcEEEEE
Q psy2113 135 ---------------------------------------PLFDMLGHEDKVMCVNWSDY-----RYIMSGGQDNSVRVFK 170 (183)
Q Consensus 135 ---------------------------------------~~~~~~~~~~~v~~~~~~~~-----~~l~~~~~dg~i~iwd 170 (183)
....+.+|...|++++|+|+ .+|++++.||.|++||
T Consensus 167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd 246 (351)
T 3f3f_A 167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK 246 (351)
T ss_dssp SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence 13445678999999999976 5899999999999999
Q ss_pred ecCCCC
Q psy2113 171 TKHQPK 176 (183)
Q Consensus 171 ~~~~~~ 176 (183)
++....
T Consensus 247 ~~~~~~ 252 (351)
T 3f3f_A 247 ITEKLS 252 (351)
T ss_dssp EEECC-
T ss_pred CCCCcC
Confidence 987643
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-25 Score=157.34 Aligned_cols=161 Identities=20% Similarity=0.329 Sum_probs=126.6
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc---CCeEEEEeCCCeEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA---VDEIITSSWDHTLKI 77 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~l~s~~~d~~v~v 77 (183)
...-.+.+++|+|++..++.+. +++|++.. .....+..+.+|.+.|.+++|++ +..|++|+.|++|++
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~-----~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRN-----GGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEET-----TEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecC-----CCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 3445678899999999998876 77775421 11234678899999999999974 345999999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCC-CCEEEEEeCCCeEEEEeCCCCCc--ceEEeccCCCcEEEEEecCC
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID-PQLFVSASFDNSVKLWDLRSPKV--PLFDMLGHEDKVMCVNWSDY 154 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~ 154 (183)
||++++... ....+.+|...|.+++|+|+. +.++++|+.|+.|++||++.... ....+.+|...|.+++|+|+
T Consensus 86 Wd~~~~~~~----~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 161 (316)
T 3bg1_A 86 WREENGTWE----KSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPA 161 (316)
T ss_dssp ECCSSSCCC----EEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCC
T ss_pred EECCCCcce----EEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccc
Confidence 999865421 244677899999999999942 77999999999999999987632 13455789999999999964
Q ss_pred ------------------cEEEEecCCCcEEEEEecCC
Q psy2113 155 ------------------RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 155 ------------------~~l~~~~~dg~i~iwd~~~~ 174 (183)
.+|++|+.|+.|++||++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 162 VVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp CCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred cCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 58999999999999999754
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.93 E-value=6.9e-24 Score=151.22 Aligned_cols=168 Identities=23% Similarity=0.341 Sum_probs=122.7
Q ss_pred eeceeEEEEEeec-CcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 6 FGILTLGVIFMTV-GALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
..-.+.+++|+|+ +.+++.+. +++|++.... .....+...+.+|...|.+++|+|++. |++++.|+.+++|+
T Consensus 37 H~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~--~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~ 114 (340)
T 4aow_A 37 HNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE--TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWD 114 (340)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSS--SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC--cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEe
Confidence 3446788999998 56777654 7888764321 223445678899999999999998876 78888888888888
Q ss_pred cCCCCCc-------------------------------------------------------------------------
Q psy2113 80 AELGGMK------------------------------------------------------------------------- 86 (183)
Q Consensus 80 ~~~~~~~------------------------------------------------------------------------- 86 (183)
.......
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d 194 (340)
T 4aow_A 115 LTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWD 194 (340)
T ss_dssp TTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETT
T ss_pred ecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCC
Confidence 7543211
Q ss_pred --------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcc-----------------------
Q psy2113 87 --------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP----------------------- 135 (183)
Q Consensus 87 --------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~----------------------- 135 (183)
........+.+|...|.+++|+| ++++|++|+.|+.|++||+++.+..
T Consensus 195 ~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 273 (340)
T 4aow_A 195 KLVKVWNLANCKLKTNHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA 273 (340)
T ss_dssp SCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEE
T ss_pred CEEEEEECCCCceeeEecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeec
Confidence 11223345567889999999999 8899999999999999999865430
Q ss_pred ----------------e---------EEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 136 ----------------L---------FDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 136 ----------------~---------~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
. ....+|...|++++|+|+ .+|++|+.||.|++||++++.+
T Consensus 274 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp EETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred cCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence 0 011256778899999965 8999999999999999998753
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=160.79 Aligned_cols=158 Identities=15% Similarity=0.234 Sum_probs=122.4
Q ss_pred ceeEEEEEeec-CcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc-C-CeEEEEeCCCeEEEEEc
Q psy2113 8 ILTLGVIFMTV-GALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-V-DEIITSSWDHTLKIWDA 80 (183)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~-~~l~s~~~d~~v~vwd~ 80 (183)
-.+.+++|+|. +.+++++. +.+|++.. ........+.+|.+.|++|+|+| + ..|++|+.|++|++||+
T Consensus 120 ~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~-----~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~ 194 (435)
T 4e54_B 120 RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGI-----KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDF 194 (435)
T ss_dssp SCEEEEEECSSCTTCEEEEETTSCEEEECSSC-----CSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEET
T ss_pred CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCC-----CCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeec
Confidence 34788999995 56777765 78886532 23334455678999999999997 3 45999999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIM 158 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~ 158 (183)
+..... .......+...+.+++|+| ++.++++|+.||.|++||++... +..+.+|...|++++|+|. .+++
T Consensus 195 ~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~~~--~~~~~~h~~~v~~v~~~p~~~~~~~ 267 (435)
T 4e54_B 195 KGNILR----VFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDGKE--LWNLRMHKKKVTHVALNPCCDWFLA 267 (435)
T ss_dssp TSCEEE----EEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSSCB--CCCSBCCSSCEEEEEECTTCSSEEE
T ss_pred cCCcee----EEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCcce--eEEEecccceEEeeeecCCCceEEE
Confidence 764321 0111122345678999999 88999999999999999997643 5678899999999999965 5888
Q ss_pred EecCCCcEEEEEecCCCCC
Q psy2113 159 SGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~~~ 177 (183)
+++.|+.|++||+++.+..
T Consensus 268 s~s~d~~v~iwd~~~~~~~ 286 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGK 286 (435)
T ss_dssp EEETTSBCCEEETTTCCSS
T ss_pred EecCcceeeEEeccccccc
Confidence 9999999999999886644
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.2e-24 Score=154.68 Aligned_cols=163 Identities=21% Similarity=0.390 Sum_probs=133.6
Q ss_pred eeceeEEEEEee-cCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEEE
Q psy2113 6 FGILTLGVIFMT-VGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKIW 78 (183)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vw 78 (183)
....+.+++|+| ++.+++++. +.+|++..........+++..+.+|...|.+++|+|++ .|++++.|+.|++|
T Consensus 80 h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp CSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred CCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEE
Confidence 344678899999 888888876 77887654322222226678899999999999999885 58999999999999
Q ss_pred EcCCCCCccCceeEEEe--ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe-ccCCCc-EEEEEecCC
Q psy2113 79 DAELGGMKKGAIVKSTF--SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM-LGHEDK-VMCVNWSDY 154 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~~~~-v~~~~~~~~ 154 (183)
|+++++. ...+ ..|...|.+++|+| ++.++++++.|+.|++||+++++. +..+ ..|... +.++.|+++
T Consensus 160 d~~~~~~------~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 231 (402)
T 2aq5_A 160 DVGTGAA------VLTLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTV-VAEKDRPHEGTRPVHAVFVSE 231 (402)
T ss_dssp ETTTTEE------EEEECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEE-EEEEECSSCSSSCCEEEECST
T ss_pred ECCCCCc------cEEEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCce-eeeeccCCCCCcceEEEEcCC
Confidence 9987664 5566 67999999999999 889999999999999999999876 5555 678765 899999976
Q ss_pred -cEEEEe---cCCCcEEEEEecCCCC
Q psy2113 155 -RYIMSG---GQDNSVRVFKTKHQPK 176 (183)
Q Consensus 155 -~~l~~~---~~dg~i~iwd~~~~~~ 176 (183)
.++++| +.|+.|++||+++.+.
T Consensus 232 ~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 232 GKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp TEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred CcEEEEeccCCCCceEEEEcCccccC
Confidence 777787 7999999999988765
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-25 Score=158.46 Aligned_cols=156 Identities=15% Similarity=0.224 Sum_probs=120.3
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCc--cceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQK--TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
.+.+++|+|++.+++++. +.+|++ ... +.+..+.+|.+.|.+++|+|++. |++++.|+.|++||+.
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~-------~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~ 85 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQ-------DGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR 85 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEE-------ETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEc-------cCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence 456788999999998874 555643 233 56677889999999999998865 9999999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc--ceEEecc-CCCcEEEEEecCC-cEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--PLFDMLG-HEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~-~~~~v~~~~~~~~-~~l 157 (183)
+... ......+..|...|.+++|+| +++++++++.|+.|++||+++... ....+.. |...|.+++|+|+ .+|
T Consensus 86 ~~~~---~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 161 (377)
T 3dwl_C 86 PDGT---WKQTLVLLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL 161 (377)
T ss_dssp ---C---CCCEEECCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred CCCc---eeeeeEecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence 7651 111456778999999999999 889999999999999999998752 2556666 9999999999976 899
Q ss_pred EEecCCCcEEEEEecCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~ 175 (183)
++++.||.|++||++...
T Consensus 162 ~~~~~d~~i~iwd~~~~~ 179 (377)
T 3dwl_C 162 AAGCADRKAYVLSAYVRD 179 (377)
T ss_dssp EEEESSSCEEEEEECCSS
T ss_pred EEEeCCCEEEEEEEEecc
Confidence 999999999999997443
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=149.45 Aligned_cols=169 Identities=18% Similarity=0.288 Sum_probs=130.6
Q ss_pred eceeEEEEEee--cCcEEEEEE----eccCCCCccccc--ccCccceEEEeccCCCeeEEEEccC--Ce-EEEEeCCCeE
Q psy2113 7 GILTLGVIFMT--VGALLTLTN----IEVTSLPSFFQL--ILQKTPLITLKGHKEAISAVQWTAV--DE-IITSSWDHTL 75 (183)
Q Consensus 7 ~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~--~~-l~s~~~d~~v 75 (183)
...+.+++|+| ++..++++. +.+|++...... ....+.+..+..|.+.|.+++|+|+ +. +++++.|+.|
T Consensus 57 ~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v 136 (351)
T 3f3f_A 57 DSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGIL 136 (351)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEE
T ss_pred CCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcE
Confidence 34577889999 588888765 667765432110 1112557788899999999999986 54 8999999999
Q ss_pred EEEEcCCCCCccC------------------------------------------------------ceeEEEeecCCcc
Q psy2113 76 KIWDAELGGMKKG------------------------------------------------------AIVKSTFSSHKEW 101 (183)
Q Consensus 76 ~vwd~~~~~~~~~------------------------------------------------------~~~~~~~~~~~~~ 101 (183)
++||+++.+.... ......+.+|...
T Consensus 137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 216 (351)
T 3f3f_A 137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL 216 (351)
T ss_dssp EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC
T ss_pred EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc
Confidence 9999876543211 1124456679999
Q ss_pred eEEEEEecCCC----CEEEEEeCCCeEEEEeCCCCC--------------------------------------------
Q psy2113 102 VQSVRWSPIDP----QLFVSASFDNSVKLWDLRSPK-------------------------------------------- 133 (183)
Q Consensus 102 v~~~~~~p~~~----~~l~~~~~dg~i~vwd~~~~~-------------------------------------------- 133 (183)
|.+++|+| ++ .++++|+.||.|++||+++..
T Consensus 217 i~~~~~~p-~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (351)
T 3f3f_A 217 IRSISWAP-SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ 295 (351)
T ss_dssp EEEEEECC-CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEE
T ss_pred eeEEEECC-CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc
Confidence 99999999 65 799999999999999998742
Q ss_pred -cceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 134 -VPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 134 -~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
..+..+.+|...|++++|+|+ .+|++++.||.|++||+.+++.
T Consensus 296 ~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 340 (351)
T 3f3f_A 296 VELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNE 340 (351)
T ss_dssp EEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred ccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence 235567789999999999965 8999999999999999998654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-23 Score=151.43 Aligned_cols=161 Identities=23% Similarity=0.380 Sum_probs=132.7
Q ss_pred eeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC---CeEEEEeCCCeEEEE
Q psy2113 6 FGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV---DEIITSSWDHTLKIW 78 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~l~s~~~d~~v~vw 78 (183)
..-.+.+++|+|++..++++. +.+|++. ....+.+..+.+|.+.|.+++|+++ ..|++++.|+.|++|
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iw 84 (379)
T 3jrp_A 10 HNELIHDAVLDYYGKRLATCSSDKTIKIFEVE-----GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW 84 (379)
T ss_dssp CCCCEEEEEECSSSSEEEEEETTSCEEEEEEE-----TTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred CcccEEEEEEcCCCCEEEEEECCCcEEEEecC-----CCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEE
Confidence 344677889999999998875 6666542 2245667788999999999999844 459999999999999
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecCC--CCEEEEEeCCCeEEEEeCCCCCc-ceEEeccCCCcEEEEEecC--
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID--PQLFVSASFDNSVKLWDLRSPKV-PLFDMLGHEDKVMCVNWSD-- 153 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~-- 153 (183)
|+.+++.. ....+..|...|.+++|+| + +.++++++.|+.|++||+++... ....+..|...|.+++|+|
T Consensus 85 d~~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 85 KEENGRWS----QIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEETTEEE----EEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EcCCCcee----EeeeecCCCcceEEEEeCC-CCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 99876421 2556778999999999999 6 88999999999999999998742 2556778999999999997
Q ss_pred ------------CcEEEEecCCCcEEEEEecCCCC
Q psy2113 154 ------------YRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 154 ------------~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+.++++++.||.|++||++....
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 58999999999999999987653
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=163.49 Aligned_cols=157 Identities=25% Similarity=0.410 Sum_probs=129.2
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
.+.+++|+|++.+++.+. +++|++ .....+..+.+|.+.|.+++|+|++. |++|+.|++|++||....
T Consensus 432 ~v~~v~~s~~g~~l~sgs~Dg~v~vwd~-------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~ 504 (694)
T 3dm0_A 432 FVEDVVLSSDGQFALSGSWDGELRLWDL-------AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGE 504 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEET-------TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEEC-------CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCC
Confidence 467889999999988876 777854 45667788899999999999998865 999999999999997643
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCC-CCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPID-PQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
... .......+|...|.+++|+|+. ...+++++.|+.|++||+++.+. ...+.+|...|++++|+|+ .+|++++
T Consensus 505 ~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~-~~~~~~h~~~v~~v~~spdg~~l~sg~ 580 (694)
T 3dm0_A 505 CKY---TISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL-RSTLAGHTGYVSTVAVSPDGSLCASGG 580 (694)
T ss_dssp EEE---EECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cce---eeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE-EEEEcCCCCCEEEEEEeCCCCEEEEEe
Confidence 210 0011124688899999999943 25899999999999999998876 7788999999999999976 8999999
Q ss_pred CCCcEEEEEecCCCC
Q psy2113 162 QDNSVRVFKTKHQPK 176 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~ 176 (183)
.||.|++||+++++.
T Consensus 581 ~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 581 KDGVVLLWDLAEGKK 595 (694)
T ss_dssp TTSBCEEEETTTTEE
T ss_pred CCCeEEEEECCCCce
Confidence 999999999987754
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-24 Score=156.03 Aligned_cols=157 Identities=13% Similarity=0.223 Sum_probs=126.3
Q ss_pred eeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 6 FGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
..-.+.+++|+|++..++++. +.+|++ ...+.+..+.+|.+.|.+++|+|++. |++++.|+.|++||+
T Consensus 138 h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~ 210 (420)
T 3vl1_A 138 HVSEITKLKFFPSGEALISSSQDMQLKIWSV-------KDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWEC 210 (420)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTSEEEEEET-------TTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEET
T ss_pred ccCccEEEEECCCCCEEEEEeCCCeEEEEeC-------CCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeEC
Confidence 344577899999999888765 667744 45567788899999999999998765 899999999999999
Q ss_pred CCCCCccCceeEEEeec---CCcceEE---------------------EEEecCCCCEEEEEeCCCeEEEEeCCCCCcce
Q psy2113 81 ELGGMKKGAIVKSTFSS---HKEWVQS---------------------VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL 136 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~---~~~~v~~---------------------~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~ 136 (183)
++++. ...+.. +...+.+ ++|+| ++.++++|+.||.|++||+++++...
T Consensus 211 ~~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 211 GTGTT------IHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT-YGKYVIAGHVSGVITVHNVFSKEQTI 283 (420)
T ss_dssp TTTEE------EEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-TTEEEEEEETTSCEEEEETTTCCEEE
T ss_pred CCCce------eEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-CCCEEEEEcCCCeEEEEECCCCceeE
Confidence 87654 334432 3344444 45567 78899999999999999999988644
Q ss_pred EEeccCCCcEEEEEecCC-c-EEEEecCCCcEEEEEecCCCC
Q psy2113 137 FDMLGHEDKVMCVNWSDY-R-YIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 137 ~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.....|...|.+++|+|+ . +|++++.||.|++||+++++.
T Consensus 284 ~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 284 QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence 555668899999999976 5 999999999999999998765
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.2e-23 Score=145.42 Aligned_cols=156 Identities=21% Similarity=0.307 Sum_probs=115.3
Q ss_pred EEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEE--eccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 11 LGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITL--KGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
..++|++++ +++++. +++|+ ..+++.+..+ .+|...|++++|+|++. +++|+.|++|++||+++++
T Consensus 29 ~~l~WS~~~-~lAvg~D~tV~iWd-------~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 29 NLVDWSSGN-VLAVALDNSVYLWS-------ASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEE-------TTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred eEEEECCCC-EEEEEeCCEEEEEE-------CCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence 347899887 666654 77774 3455555555 46788899999998876 8999999999999998764
Q ss_pred Cc-----------------------------------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 85 MK-----------------------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 85 ~~-----------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
.. ........+.+|...+..+.+++ .+.++++++.|+.|++||+
T Consensus 101 ~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i~iwd~ 179 (318)
T 4ggc_A 101 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLVNVWPS 179 (318)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEES
T ss_pred eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcceeEEEC
Confidence 32 01122334556777777777777 6777777777888888877
Q ss_pred CCCCc---------------------------------------------------------------------------
Q psy2113 130 RSPKV--------------------------------------------------------------------------- 134 (183)
Q Consensus 130 ~~~~~--------------------------------------------------------------------------- 134 (183)
++++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s 259 (318)
T 4ggc_A 180 APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH 259 (318)
T ss_dssp SCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred CCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEE
Confidence 65431
Q ss_pred ----------------ceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 135 ----------------PLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 135 ----------------~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
++..+.+|.+.|++++|+|+ .+|++|+.||+|++||+.+.+
T Consensus 260 g~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp CTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred EcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 35566789999999999965 899999999999999987654
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=152.28 Aligned_cols=153 Identities=18% Similarity=0.348 Sum_probs=128.0
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEec---c---CCCeeEEEEccCCe-EEEEeCC---
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKG---H---KEAISAVQWTAVDE-IITSSWD--- 72 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---h---~~~v~~~~~~~~~~-l~s~~~d--- 72 (183)
...+.+++|+|++ .++++. +.+|++ ...+.+..+.. | ...|.+++|+|++. |++++.|
T Consensus 186 ~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~-------~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~ 257 (397)
T 1sq9_A 186 SQFATSVDISERG-LIATGFNNGTVQISEL-------STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSF 257 (397)
T ss_dssp CCCCCEEEECTTS-EEEEECTTSEEEEEET-------TTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTE
T ss_pred CCCceEEEECCCc-eEEEEeCCCcEEEEEC-------CCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCC
Confidence 4456788999999 777754 666643 45667788888 9 99999999998765 8889999
Q ss_pred CeEEEEEcCCCCCccCceeEEEeec-------------CCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTFSS-------------HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM 139 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~~~-------------~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 139 (183)
+.|++||+++.+. ...+.. |...|.+++|+| ++.+|++++.||.|++||+++++. +..+
T Consensus 258 g~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-~~~~ 329 (397)
T 1sq9_A 258 GCITLYETEFGER------IGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKER-ITTL 329 (397)
T ss_dssp EEEEEEETTTCCE------EEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEE-EEEE
T ss_pred ceEEEEECCCCcc------cceeccCcccccccccccccCCcEEEEEECC-CCCEEEEEeCCCeEEEEEcCCCce-eEEE
Confidence 9999999987664 556677 999999999999 889999999999999999998876 6777
Q ss_pred c------cC---------------CCcEEEEEecCC-----------cEEEEecCCCcEEEEEecCCC
Q psy2113 140 L------GH---------------EDKVMCVNWSDY-----------RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 140 ~------~~---------------~~~v~~~~~~~~-----------~~l~~~~~dg~i~iwd~~~~~ 175 (183)
. +| ...|++++|+|+ .+|++++.||.|++||+++++
T Consensus 330 ~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 330 NMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp ECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred ecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 7 77 899999999976 599999999999999998763
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-23 Score=144.34 Aligned_cols=154 Identities=18% Similarity=0.272 Sum_probs=128.5
Q ss_pred ceeEEEEEee-cCcEEEEEE----eccCCCCcccccccCccceEEEec-cCCCeeEEEEccCCeEEEEeCCCeEEEEEcC
Q psy2113 8 ILTLGVIFMT-VGALLTLTN----IEVTSLPSFFQLILQKTPLITLKG-HKEAISAVQWTAVDEIITSSWDHTLKIWDAE 81 (183)
Q Consensus 8 ~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~ 81 (183)
....+++|.| ++..++++. +.+|+ ..+....+.. |...|.+++|+|++.+++++.|+.|++||++
T Consensus 143 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d---------~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~i~d~~ 213 (313)
T 3odt_A 143 ASVWDAKVVSFSENKFLTASADKTIKLWQ---------NDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDMH 213 (313)
T ss_dssp SCEEEEEEEETTTTEEEEEETTSCEEEEE---------TTEEEEEECSSCSSCEEEEEEEETTEEEEEETTSEEEEEETT
T ss_pred CceeEEEEccCCCCEEEEEECCCCEEEEe---------cCceEEEEeccCcccEEEEEEcCCCeEEEccCCCeEEEEECC
Confidence 3456777877 777777765 55553 3445566666 8999999999999999999999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEec
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGG 161 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~ 161 (183)
+.+. ...+..|...|.+++|+| ++ .+++++.||.|++||+++++. ...+..|...|.+++|+++..+++++
T Consensus 214 ~~~~------~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 284 (313)
T 3odt_A 214 TGDV------LRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGSL-KQVITLPAISIWSVDCMSNGDIIVGS 284 (313)
T ss_dssp TCCE------EEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCCE-EEEEECSSSCEEEEEECTTSCEEEEE
T ss_pred chhh------hhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCce-eEEEeccCceEEEEEEccCCCEEEEe
Confidence 7764 667888999999999999 66 688999999999999999876 77888999999999999875688899
Q ss_pred CCCcEEEEEecCCCCCCC
Q psy2113 162 QDNSVRVFKTKHQPKSGQ 179 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~~~~ 179 (183)
.||.|++||+++++...+
T Consensus 285 ~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 285 SDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp TTSCEEEEESCGGGCCC-
T ss_pred CCCcEEEEeCCCCceeeh
Confidence 999999999998765543
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-23 Score=163.66 Aligned_cols=157 Identities=22% Similarity=0.328 Sum_probs=136.0
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
.-.+.+++|+|++..++++. +.+|+ ...+..+..+.+|.++|.+++|+|++. |++++.|+.|++||+.
T Consensus 13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd-------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 85 (814)
T 3mkq_A 13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWN-------YETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN 85 (814)
T ss_dssp CSCEEEEEECSSSSEEEEEETTSEEEEEE-------TTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred CCceEEEEECCCCCEEEEEeCCCEEEEEE-------CCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence 34578899999999999875 55664 445677888999999999999998765 8999999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-C-cEEEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-Y-RYIMS 159 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~ 159 (183)
+++. ...+.+|...|.+++|+| ++.++++++.||.|++||++++......+.+|...|.+++|+| + ..+++
T Consensus 86 ~~~~------~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 158 (814)
T 3mkq_A 86 TGEK------VVDFEAHPDYIRSIAVHP-TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158 (814)
T ss_dssp TCCE------EEEEECCSSCEEEEEECS-SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEE
T ss_pred CCcE------EEEEecCCCCEEEEEEeC-CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEE
Confidence 8765 567788999999999999 8889999999999999999987554778889999999999998 4 79999
Q ss_pred ecCCCcEEEEEecCCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~~ 177 (183)
++.||.|++||++++...
T Consensus 159 ~~~dg~v~vwd~~~~~~~ 176 (814)
T 3mkq_A 159 GCLDRTVKVWSLGQSTPN 176 (814)
T ss_dssp EETTSEEEEEETTCSSCS
T ss_pred EeCCCeEEEEECCCCcce
Confidence 999999999999876543
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-23 Score=156.25 Aligned_cols=147 Identities=29% Similarity=0.453 Sum_probs=125.3
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
..+.+++|+|++..++.+. +++|+. ..+.+..+.+|...|.+++|+|++. |++++.|+.+++||...
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~--------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~ 457 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDDKTVKLWNR--------NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG 457 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECT--------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeC--------CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 3467889999999988765 666642 4456788899999999999998875 88999999999999643
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
+. ...+.+|...|.+++|+| ++.++++++.|+.|++||. +++. +..+.+|...|++++|+|+ .+|++++
T Consensus 458 -~~------~~~~~~~~~~v~~~~~sp-d~~~las~~~d~~i~iw~~-~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~ 527 (577)
T 2ymu_A 458 -QL------LQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQL-LQTLTGHSSSVRGVAFSPDGQTIASAS 527 (577)
T ss_dssp -CE------EEEEECCSSCEEEEEECT-TSCEEEEEETTSEEEEEET-TSCE-EEEEECCSSCEEEEEECTTSSCEEEEE
T ss_pred -CE------EEEEcCCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEcC-CCCE-EEEEeCCCCCEEEEEEcCCCCEEEEEE
Confidence 22 567889999999999999 8999999999999999996 4444 7788999999999999976 8999999
Q ss_pred CCCcEEEEEec
Q psy2113 162 QDNSVRVFKTK 172 (183)
Q Consensus 162 ~dg~i~iwd~~ 172 (183)
.||.|++||..
T Consensus 528 ~dg~v~lwd~~ 538 (577)
T 2ymu_A 528 DDKTVKLWNRN 538 (577)
T ss_dssp TTSEEEEECTT
T ss_pred CcCEEEEEeCC
Confidence 99999999953
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=153.50 Aligned_cols=153 Identities=20% Similarity=0.280 Sum_probs=123.9
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
....+|++++..++++. +.+|++ ...+....+.+|.+.|.+++|+|++. |++++.|+.|++||+++.+
T Consensus 100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~ 172 (420)
T 3vl1_A 100 TAVDTAKLQMRRFILGTTEGDIKVLDS-------NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS 172 (420)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEECT-------TSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred eEEEEEecCCCEEEEEECCCCEEEEeC-------CCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence 34446899999988876 666754 34555666689999999999998875 8999999999999998876
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc---CCCcEEEEEe----------
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG---HEDKVMCVNW---------- 151 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v~~~~~---------- 151 (183)
. ...+.+|...|.+++|+| ++.++++++.|+.|++||+++++. ...+.. +...+.+++|
T Consensus 173 ~------~~~~~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 244 (420)
T 3vl1_A 173 N------PRTLIGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTT-IHTFNRKENPHDGVNSIALFVGTDRQLHE 244 (420)
T ss_dssp C------CEEEECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEE-EEEECBTTBTTCCEEEEEEEECCCSSCGG
T ss_pred C------ceEEcCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCce-eEEeecCCCCCCCccEEEEecCCcceeee
Confidence 5 557789999999999999 889999999999999999998875 555553 4445555554
Q ss_pred -----------cCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 152 -----------SDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 152 -----------~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+|+ .++++++.||.|++||+++++..
T Consensus 245 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~ 282 (420)
T 3vl1_A 245 ISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQT 282 (420)
T ss_dssp GCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEE
T ss_pred cccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 544 79999999999999999887643
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-24 Score=153.41 Aligned_cols=161 Identities=13% Similarity=0.109 Sum_probs=122.6
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
...+.+++|+|++..++.+. +++|++.... ...+...+.+|...|.+++|+|++. |++++.|+.|++||++
T Consensus 55 ~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~ 130 (377)
T 3dwl_C 55 DKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG----TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFE 130 (377)
T ss_dssp SSCEEEEEECTTTCCEEEEETTSSEEEC----------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-
T ss_pred CceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC----ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEEC
Confidence 34577889999998888765 7778654211 1335677888999999999998865 8999999999999998
Q ss_pred CCCCccCceeEEEeec-CCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC-----------------cceEEeccCC
Q psy2113 82 LGGMKKGAIVKSTFSS-HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-----------------VPLFDMLGHE 143 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~-----------------~~~~~~~~~~ 143 (183)
..+.. .....+.. |...|.+++|+| +++++++++.|+.|++||++... .+...+ +|.
T Consensus 131 ~~~~~---~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 205 (377)
T 3dwl_C 131 QENDW---WVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG 205 (377)
T ss_dssp ----C---CCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS
T ss_pred Ccccc---eeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC
Confidence 76521 01335556 999999999999 88999999999999999986321 113344 899
Q ss_pred CcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 144 DKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 144 ~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
..|.+++|+|+ .+|++++.||.|++||+++++.
T Consensus 206 ~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 206 GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp SSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 99999999976 8999999999999999998876
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-23 Score=153.36 Aligned_cols=160 Identities=23% Similarity=0.347 Sum_probs=123.1
Q ss_pred EEEeecCcEEEEE-----EeccCCCCcccccccCccceEEEeccCCCeeEEEEcc-CC-eEEEEeCCCeEEEEEcCCCCC
Q psy2113 13 VIFMTVGALLTLT-----NIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-VD-EIITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 13 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~~~d~~v~vwd~~~~~~ 85 (183)
++++|+...+... .+.+|++.... .....+..+.+|.+.|.+++|+| ++ .|++|+.|+.|++||+.+...
T Consensus 40 ~~~~~~~~~~~~~~~~~g~i~v~~~~~~~---~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~ 116 (402)
T 2aq5_A 40 CAVNPKFMALICEASGGGAFLVLPLGKTG---RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116 (402)
T ss_dssp EEECSSEEEEEBCCSSSCCEEEEETTCCE---ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCC
T ss_pred EEECCCeEEEEEEEcCCCEEEEEECccCC---CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCC
Confidence 5666666554431 26666543211 11234556789999999999998 65 489999999999999987643
Q ss_pred ccC-ceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe--ccCCCcEEEEEecCC-cEEEEec
Q psy2113 86 KKG-AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM--LGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 86 ~~~-~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
... ..+...+.+|...|.+++|+|++.+++++++.|+.|++||+++++. ...+ ..|...|.+++|+|+ .+|++++
T Consensus 117 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 195 (402)
T 2aq5_A 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGALICTSC 195 (402)
T ss_dssp SSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred ccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence 111 1125577899999999999994347999999999999999998876 6667 789999999999965 8999999
Q ss_pred CCCcEEEEEecCCCC
Q psy2113 162 QDNSVRVFKTKHQPK 176 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~ 176 (183)
.||.|++||+++++.
T Consensus 196 ~d~~i~iwd~~~~~~ 210 (402)
T 2aq5_A 196 RDKRVRVIEPRKGTV 210 (402)
T ss_dssp TTSEEEEEETTTTEE
T ss_pred cCCcEEEEeCCCCce
Confidence 999999999987653
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=149.56 Aligned_cols=153 Identities=21% Similarity=0.369 Sum_probs=126.3
Q ss_pred eeEEEEEeec----CcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc-CCe-EEEEeCCCeEEEE
Q psy2113 9 LTLGVIFMTV----GALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-VDE-IITSSWDHTLKIW 78 (183)
Q Consensus 9 ~~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~-l~s~~~d~~v~vw 78 (183)
.+.+++|+|+ +.+++++. +.+|++ ...+.+..+.+|...|.+++|+| ++. |++++.|+.|++|
T Consensus 71 ~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~-------~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw 143 (366)
T 3k26_A 71 NFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP-------ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW 143 (366)
T ss_dssp CEEEEEEEECTTTCCEEEEEEETTCEEEEECT-------TTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEE
T ss_pred cEEEEEeccCCCCCCCEEEEecCCCEEEEEEc-------hhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence 4678899999 56777765 777754 35567788899999999999998 654 8999999999999
Q ss_pred EcCCCCCccCceeEEEe---ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcc--------------------
Q psy2113 79 DAELGGMKKGAIVKSTF---SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP-------------------- 135 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~-------------------- 135 (183)
|+++++. ...+ ..|...|.+++|+| ++.++++++.||.|++||+++++..
T Consensus 144 d~~~~~~------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (366)
T 3k26_A 144 NIQTDTL------VAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 216 (366)
T ss_dssp ETTTTEE------EEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCC
T ss_pred EeecCeE------EEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccc
Confidence 9987654 4445 57999999999999 8899999999999999999876431
Q ss_pred -------eEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 136 -------LFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 136 -------~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
......|...|.+++|+ +.++++++.||.|++||+++...
T Consensus 217 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~ 263 (366)
T 3k26_A 217 QKIHFPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMED 263 (366)
T ss_dssp EEECCCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTC
T ss_pred eeeccCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccc
Confidence 12233489999999999 67999999999999999988765
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-23 Score=151.46 Aligned_cols=165 Identities=22% Similarity=0.335 Sum_probs=129.2
Q ss_pred ceeEEEEEeecCc-EEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc-CC-eEEEEeCCCeEEEEEc
Q psy2113 8 ILTLGVIFMTVGA-LLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-VD-EIITSSWDHTLKIWDA 80 (183)
Q Consensus 8 ~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~-~l~s~~~d~~v~vwd~ 80 (183)
..+.+++|+|++. .++++. +.+|.+...............+.+|...|.+++|+| ++ .|++++.|+.|++||+
T Consensus 182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~ 261 (430)
T 2xyi_A 182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDT 261 (430)
T ss_dssp SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEET
T ss_pred CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 3457789999988 776654 777766532111112233567789999999999998 33 4889999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIM 158 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~ 158 (183)
+...... ....+..|...|.+++|+|++..++++|+.||.|++||+++...++..+..|...|.+++|+|+ .+++
T Consensus 262 ~~~~~~~---~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~ 338 (430)
T 2xyi_A 262 RNNNTSK---PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILA 338 (430)
T ss_dssp TCSCSSS---CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEE
T ss_pred CCCCCCc---ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEE
Confidence 8763111 1445678999999999999544589999999999999999866568888999999999999975 4799
Q ss_pred EecCCCcEEEEEecCCC
Q psy2113 159 SGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~ 175 (183)
+++.||.|++||++...
T Consensus 339 s~~~d~~i~iwd~~~~~ 355 (430)
T 2xyi_A 339 SSGTDRRLHVWDLSKIG 355 (430)
T ss_dssp EEETTSCCEEEEGGGTT
T ss_pred EEeCCCcEEEEeCCCCc
Confidence 99999999999998743
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=144.52 Aligned_cols=160 Identities=21% Similarity=0.358 Sum_probs=130.0
Q ss_pred eceeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEe--ccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 7 GILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLK--GHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
.-.+.+++|+|++.+++++. +.+|++... .....+..+. .|...|.+++|+|++. +++++.|+.|++||+
T Consensus 51 ~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~ 126 (337)
T 1gxr_A 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHP----GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBSEEEEEETTST----TCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEEC
T ss_pred CCceEEEEEecCCcEEEEcCCCeEEEEECCCC----CceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence 34567889999999988865 666655321 1223344444 7899999999998875 889999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~ 159 (183)
++.+.. ....+..|...+.+++|+| +++++++++.||.|++||+++++. ...+..|...|.+++|+|+ .++++
T Consensus 127 ~~~~~~----~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~ 200 (337)
T 1gxr_A 127 AAPTPR----IKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWT 200 (337)
T ss_dssp CCC--E----EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CCCCcc----eeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCce-eeeeecccCceEEEEECCCCCEEEE
Confidence 876531 2456778999999999999 889999999999999999998765 7788889999999999966 89999
Q ss_pred ecCCCcEEEEEecCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~ 176 (183)
++.||.|++||+++++.
T Consensus 201 ~~~dg~i~~~d~~~~~~ 217 (337)
T 1gxr_A 201 GGLDNTVRSWDLREGRQ 217 (337)
T ss_dssp EETTSEEEEEETTTTEE
T ss_pred EecCCcEEEEECCCCce
Confidence 99999999999987653
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=157.44 Aligned_cols=161 Identities=9% Similarity=0.064 Sum_probs=125.4
Q ss_pred eeEEEEEeec------CcEEEEEE----eccCCCCccccc----ccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCe
Q psy2113 9 LTLGVIFMTV------GALLTLTN----IEVTSLPSFFQL----ILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHT 74 (183)
Q Consensus 9 ~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~ 74 (183)
.+.+++|+|+ +.+++.+. +++|++...... .....+...+.+|...|.+++|++++.|++|+.||+
T Consensus 209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~Dgt 288 (524)
T 2j04_B 209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKNGF 288 (524)
T ss_dssp SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEETTSE
T ss_pred cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeCCCE
Confidence 3678899997 45777655 778876532110 012234567889999999999998888999999999
Q ss_pred EEEEEcCCCCCccCceeEEEeecCCcceEEE--EEecCCC-CEEEEEeCCCeEEEEeCCCCCcceEEeccCCC--cEEEE
Q psy2113 75 LKIWDAELGGMKKGAIVKSTFSSHKEWVQSV--RWSPIDP-QLFVSASFDNSVKLWDLRSPKVPLFDMLGHED--KVMCV 149 (183)
Q Consensus 75 v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~p~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~v~~~ 149 (183)
|++||++++.. +...+.+|...|.++ .|+| ++ .+|++|+.|++|++||+++++. ...+.+|.. .|.++
T Consensus 289 V~lWD~~~~~~-----~~~~~~~H~~~V~sv~~~~s~-~g~~~laS~S~D~tvklWD~~~~~~-~~~~~~~~~~~~v~~v 361 (524)
T 2j04_B 289 VAEFDLTDPEV-----PSFYDQVHDSYILSVSTAYSD-FEDTVVSTVAVDGYFYIFNPKDIAT-TKTTVSRFRGSNLVPV 361 (524)
T ss_dssp EEEEETTBCSS-----CSEEEECSSSCEEEEEEECCT-TSCCEEEEEETTSEEEEECGGGHHH-HCEEEEECSCCSCCCE
T ss_pred EEEEECCCCCC-----ceEEeecccccEEEEEEEcCC-CCCeEEEEeccCCeEEEEECCCCCc-ccccccccccCcccce
Confidence 99999986532 134578899999999 4677 66 8999999999999999998765 444555543 58899
Q ss_pred EecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 150 NWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 150 ~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+|+|+ ..+++++.|++|++||++++..
T Consensus 362 ~fsp~~~~l~s~~~d~tv~lwd~~~~~~ 389 (524)
T 2j04_B 362 VYCPQIYSYIYSDGASSLRAVPSRAAFA 389 (524)
T ss_dssp EEETTTTEEEEECSSSEEEEEETTCTTC
T ss_pred EeCCCcCeEEEeCCCCcEEEEECccccc
Confidence 99985 7899999999999999988654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=144.99 Aligned_cols=155 Identities=19% Similarity=0.369 Sum_probs=123.9
Q ss_pred eceeEEEEEeec---Cc--EEEEEE---eccCCCCcccccccCccceEEEec-----cCCCeeEEEEccC----Ce-EEE
Q psy2113 7 GILTLGVIFMTV---GA--LLTLTN---IEVTSLPSFFQLILQKTPLITLKG-----HKEAISAVQWTAV----DE-IIT 68 (183)
Q Consensus 7 ~~~~~~~~~~~~---~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~~~----~~-l~s 68 (183)
.-.+.+++|+|+ +. ++++.. +.+|++. ....+..+.. |...|.+++|+|+ +. |++
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~ 90 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECH-------SQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAV 90 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEEC-------GGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEE
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcC-------CCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEE
Confidence 446788999984 33 444443 6666543 3333444443 5678999999977 33 899
Q ss_pred EeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe---ccCCCc
Q psy2113 69 SSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM---LGHEDK 145 (183)
Q Consensus 69 ~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---~~~~~~ 145 (183)
|+.|+.|++||+.+.+. ...+.+|...|.+++|+|.++.++++++.||.|++||+++++. ...+ ..|...
T Consensus 91 ~~~dg~i~v~d~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~ 163 (366)
T 3k26_A 91 AGSRGIIRIINPITMQC------IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-VAIFGGVEGHRDE 163 (366)
T ss_dssp EETTCEEEEECTTTCCE------EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-EEEECSTTSCSSC
T ss_pred ecCCCEEEEEEchhceE------eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-EEEecccccccCc
Confidence 99999999999987664 6678889999999999996678999999999999999998875 5555 689999
Q ss_pred EEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 146 VMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 146 v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
|.+++|+|+ .+|++++.||.|++||+++++
T Consensus 164 v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~ 194 (366)
T 3k26_A 164 VLSADYDLLGEKIMSCGMDHSLKLWRINSKR 194 (366)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESCSHH
T ss_pred eeEEEECCCCCEEEEecCCCCEEEEECCCCc
Confidence 999999965 899999999999999998653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-22 Score=145.35 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=122.8
Q ss_pred eceeEEEEEeecC-cEEEEEE----eccCCCCcccccccCccceEEE--eccCCCeeEEEEcc-CC-eEEEEeCCCeEEE
Q psy2113 7 GILTLGVIFMTVG-ALLTLTN----IEVTSLPSFFQLILQKTPLITL--KGHKEAISAVQWTA-VD-EIITSSWDHTLKI 77 (183)
Q Consensus 7 ~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~-~~-~l~s~~~d~~v~v 77 (183)
.-.+.+++|+|++ .+++++. +.+|++. ..+....+ .+|.+.|.+++|+| ++ .|++++.|+.|++
T Consensus 73 ~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i 145 (383)
T 3ei3_B 73 DRRVTSLEWHPTHPTTVAVGSKGGDIILWDYD-------VQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL 145 (383)
T ss_dssp SSCEEEEEECSSCTTEEEEEEBTSCEEEEETT-------STTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred CCCEEEEEECCCCCCEEEEEcCCCeEEEEeCC-------CcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence 3456788999999 7777765 6677543 33334444 36999999999998 43 4899999999999
Q ss_pred EEcCCCCCccCceeEEEee---cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC
Q psy2113 78 WDAELGGMKKGAIVKSTFS---SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY 154 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 154 (183)
||++... ...+. .|...|.+++|+| ++.++++|+.|+.|++||++ ++. ...+.+|...|.+++|+|+
T Consensus 146 wd~~~~~-------~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~-~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 146 RDFSGSV-------IQVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHE-IFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp EETTSCE-------EEEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCE-EEEEECSSSCEEEEEECSS
T ss_pred EECCCCc-------eEEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCE-EEEeccCCCcEEEEEECCC
Confidence 9998532 33343 3458899999999 88999999999999999995 343 7788899999999999976
Q ss_pred -c-EEEEecCCCcEEEEEecCCCC
Q psy2113 155 -R-YIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 155 -~-~l~~~~~dg~i~iwd~~~~~~ 176 (183)
. ++++++.|+.|++||+++.+.
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~ 239 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKD 239 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCS
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCc
Confidence 5 899999999999999998543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=166.16 Aligned_cols=155 Identities=23% Similarity=0.386 Sum_probs=134.9
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
.-.+.+++|+|++..++++. +.+|+ ....+.+..+.+|.+.|.+++|+|++. +++++.|+.|++||+.
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~-------~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~ 687 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFK-------AETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSA 687 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEE-------TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEE-------CCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECC
Confidence 34577889999999998876 66664 456677888999999999999998875 8899999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecC-CCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPI-DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~ 159 (183)
+++. ...+.+|...|.+++|+|+ +..++++|+.|+.|++||++++.. ...+.+|...|++++|+|+ .++++
T Consensus 688 ~~~~------~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~-~~~~~~h~~~v~~~~~sp~~~~l~s 760 (1249)
T 3sfz_A 688 TGKL------VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC-RNTMFGHTNSVNHCRFSPDDELLAS 760 (1249)
T ss_dssp TCCE------EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE-EEEECCCSSCEEEEEECSSTTEEEE
T ss_pred CCce------EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch-hheecCCCCCEEEEEEecCCCEEEE
Confidence 8765 6678899999999999994 345889999999999999999876 7788899999999999976 89999
Q ss_pred ecCCCcEEEEEecCCC
Q psy2113 160 GGQDNSVRVFKTKHQP 175 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~ 175 (183)
++.||.|++||+++++
T Consensus 761 ~s~dg~v~vwd~~~~~ 776 (1249)
T 3sfz_A 761 CSADGTLRLWDVRSAN 776 (1249)
T ss_dssp EESSSEEEEEEGGGTE
T ss_pred EECCCeEEEEeCCCCc
Confidence 9999999999998764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-22 Score=150.75 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=127.4
Q ss_pred eeEEEEEeecCcEE-EEEE----eccCCCCcccccccCccceEEEe--ccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 9 LTLGVIFMTVGALL-TLTN----IEVTSLPSFFQLILQKTPLITLK--GHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 9 ~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
.+.+++|+|++..+ +++. +.+|++.. .....+..+. .|...|.+++|+|++. |++++.++.+++|++
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~ 178 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDK-----TSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDI 178 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECS-----SSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcC-----CCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEec
Confidence 47889999999986 5553 66675421 1445556665 5678999999998875 889999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCC---CCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPID---PQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYI 157 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~---~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l 157 (183)
.+...... ....+.+|...|.+++|+| + +.+|++|+.|+.|++||++++......+.+|...|.+++|+++.+|
T Consensus 179 ~~~~~~~~--~~~~~~~h~~~v~~~~~sp-~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd~~~l 255 (450)
T 2vdu_B 179 NSIPEEKF--TQEPILGHVSMLTDVHLIK-DSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGKDYLL 255 (450)
T ss_dssp TSCCCSSC--CCCCSEECSSCEEEEEEEE-CTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECSTTEE
T ss_pred CCcccccc--cceeeecccCceEEEEEcC-CCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECCCCEE
Confidence 87654210 1225667999999999999 7 8899999999999999999887633336689999999999944899
Q ss_pred EEecCCCcEEEEEecCCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~~ 176 (183)
++++.|+.|++||+++++.
T Consensus 256 ~s~~~d~~v~vwd~~~~~~ 274 (450)
T 2vdu_B 256 LSAGGDDKIFAWDWKTGKN 274 (450)
T ss_dssp EEEESSSEEEEEETTTCCE
T ss_pred EEEeCCCeEEEEECCCCcE
Confidence 9999999999999988763
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=148.40 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=129.7
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~ 83 (183)
..+.+++|+|++..++++. +.+|++ ...+.+..+..|...|.+++|+|++.+++++.|+.|++||+++.
T Consensus 248 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~-------~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 320 (425)
T 1r5m_A 248 GPISVLEFNDTNKLLLSASDDGTLRIWHG-------GNGNSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN 320 (425)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEECS-------SSBSCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEEC-------CCCccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC
Confidence 3567889999999888876 666644 34566778889999999999999889999999999999999876
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC-------------------cceEEeccCCC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-------------------VPLFDMLGHED 144 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~-------------------~~~~~~~~~~~ 144 (183)
+. ...+..|...+.+++|+| +++++++++.||.|++||+++.. .++..+..|..
T Consensus 321 ~~------~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (425)
T 1r5m_A 321 TL------LALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQD 393 (425)
T ss_dssp EE------EEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTC
T ss_pred cE------eEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCccc
Confidence 64 567778999999999999 88999999999999999998765 13677888876
Q ss_pred --cEEEEEecCC-cEEEEecCCCcEEEEEec
Q psy2113 145 --KVMCVNWSDY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 145 --~v~~~~~~~~-~~l~~~~~dg~i~iwd~~ 172 (183)
.|++++|+++ .+|++++.||.|++||++
T Consensus 394 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 394 NDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp CCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred CCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 9999999966 899999999999999986
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-22 Score=145.47 Aligned_cols=155 Identities=21% Similarity=0.421 Sum_probs=130.4
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~ 82 (183)
...+.+++|+|++..++++. +.+|+ ....+.+..+.+|...|.+++|+ ...+++++.|+.|++||++.
T Consensus 134 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd-------~~~~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~dg~i~i~d~~~ 205 (401)
T 4aez_A 134 STYVASVKWSHDGSFLSVGLGNGLVDIYD-------VESQTKLRTMAGHQARVGCLSWN-RHVLSSGSRSGAIHHHDVRI 205 (401)
T ss_dssp TCCEEEEEECTTSSEEEEEETTSCEEEEE-------TTTCCEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTS
T ss_pred CCCEEEEEECCCCCEEEEECCCCeEEEEE-------CcCCeEEEEecCCCCceEEEEEC-CCEEEEEcCCCCEEEEeccc
Confidence 34577899999999998876 56664 34567788889999999999994 46799999999999999985
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEe
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSG 160 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~ 160 (183)
... ....+.+|...|.+++|+| ++.++++|+.|+.|++||+++... ...+..|...|.+++|+|+ ..++++
T Consensus 206 ~~~-----~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~~~~~~v~~~~~~p~~~~ll~~~ 278 (401)
T 4aez_A 206 ANH-----QIGTLQGHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSIP-KFTKTNHNAAVKAVAWCPWQSNLLATG 278 (401)
T ss_dssp SSC-----EEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSSE-EEEECCCSSCCCEEEECTTSTTEEEEE
T ss_pred Ccc-----eeeEEcCCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCCc-cEEecCCcceEEEEEECCCCCCEEEEe
Confidence 432 2567788999999999999 889999999999999999998775 7778899999999999974 677776
Q ss_pred c--CCCcEEEEEecCCCC
Q psy2113 161 G--QDNSVRVFKTKHQPK 176 (183)
Q Consensus 161 ~--~dg~i~iwd~~~~~~ 176 (183)
+ .|+.|++||+++++.
T Consensus 279 ~gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 279 GGTMDKQIHFWNAATGAR 296 (401)
T ss_dssp CCTTTCEEEEEETTTCCE
T ss_pred cCCCCCEEEEEECCCCCE
Confidence 5 799999999987654
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=156.94 Aligned_cols=159 Identities=25% Similarity=0.319 Sum_probs=127.0
Q ss_pred ceeEEEEEeecC-cEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 8 ILTLGVIFMTVG-ALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 8 ~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
-.+.+++|+|++ .+++++. +++|++.... .........+.+|...|.+++|+|++. |++|+.|+.|++||+.
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~--~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~ 460 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDD--KAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA 460 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCST--TCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCC--cccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 346788899875 5666554 7888764321 122344567899999999999998876 8899999999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEE---eccCCCcEEEEEecCC---c
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFD---MLGHEDKVMCVNWSDY---R 155 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~~v~~~~~~~~---~ 155 (183)
++.. ...+.+|...|.+++|+| +++++++|+.|+.|++||...... ... ..+|...|.+++|+|+ .
T Consensus 461 ~~~~------~~~~~~h~~~v~~~~~s~-~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 461 AGVS------TRRFVGHTKDVLSVAFSL-DNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp TTEE------EEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred CCcc------eeEEeCCCCCEEEEEEeC-CCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 7664 567889999999999999 889999999999999999875432 222 2468889999999975 5
Q ss_pred EEEEecCCCcEEEEEecCCCC
Q psy2113 156 YIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 156 ~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.+++++.|+.|++||+++.+.
T Consensus 533 ~l~s~s~d~~v~vwd~~~~~~ 553 (694)
T 3dm0_A 533 TIVSASWDKTVKVWNLSNCKL 553 (694)
T ss_dssp EEEEEETTSCEEEEETTTCCE
T ss_pred eEEEEeCCCeEEEEECCCCcE
Confidence 899999999999999987653
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.7e-22 Score=142.88 Aligned_cols=162 Identities=19% Similarity=0.232 Sum_probs=128.6
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
.-.+.+++|+|++.+++++. +.+|+ ....+.+..+.+|.+.|.+++|+|++. |++++.|+.|++||+.
T Consensus 32 ~~~v~~~~~s~~~~~l~~~~~dg~i~vwd-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 32 ERPLTQVKYNKEGDLLFSCSKDSSASVWY-------SLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp SSCEEEEEECTTSCEEEEEESSSCEEEEE-------TTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred eceEEEEEEcCCCCEEEEEeCCCEEEEEe-------CCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 34577889999999988876 66663 446677888999999999999998765 8999999999999998
Q ss_pred CCCCccC-------------------------------ce--------------------eEEEeecCCc--ceEEEEEe
Q psy2113 82 LGGMKKG-------------------------------AI--------------------VKSTFSSHKE--WVQSVRWS 108 (183)
Q Consensus 82 ~~~~~~~-------------------------------~~--------------------~~~~~~~~~~--~v~~~~~~ 108 (183)
+.+.... .. ....+..|.. .+.+++|+
T Consensus 105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (369)
T 3zwl_B 105 NGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS 184 (369)
T ss_dssp TCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred CCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence 7543210 00 0111122222 78899999
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 109 PIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 109 p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
| +++++++++.||.|++||+++.......+..|...|.+++|+|+ .+|++++.||.|++||+++.+.
T Consensus 185 ~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 185 T-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp G-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred C-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 9 88899999999999999999854447888899999999999966 8999999999999999987654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=145.12 Aligned_cols=153 Identities=14% Similarity=0.228 Sum_probs=125.3
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCcc--ceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKT--PLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
.+.+++|+|++.+++++. +.+|++ ...+ .+..+.+|...|.+++|+|++. |++++.|+.|++||++
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~-------~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~ 82 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEK-------SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK 82 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEE-------ETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeC-------CCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence 456789999999998874 666643 3333 7788899999999999998765 8899999999999997
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc---ceEEeccCCCcEEEEEecCC-cEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV---PLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
+.+.. ....+..|...|.+++|+| +++++++++.|+.|++||++.... .......|...|.+++|+|+ .++
T Consensus 83 ~~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 157 (372)
T 1k8k_C 83 GRTWK----PTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157 (372)
T ss_dssp TTEEE----EEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEE
T ss_pred CCeee----eeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEE
Confidence 66531 1233467899999999999 889999999999999999998763 13344678999999999966 899
Q ss_pred EEecCCCcEEEEEecC
Q psy2113 158 MSGGQDNSVRVFKTKH 173 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~ 173 (183)
++++.||.|++||++.
T Consensus 158 ~~~~~dg~i~~~d~~~ 173 (372)
T 1k8k_C 158 AAGSCDFKCRIFSAYI 173 (372)
T ss_dssp EEEETTSCEEEEECCC
T ss_pred EEEcCCCCEEEEEccc
Confidence 9999999999999763
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=147.19 Aligned_cols=124 Identities=23% Similarity=0.385 Sum_probs=101.0
Q ss_pred EEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecC-CCCEEEEEeCCCeE
Q psy2113 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI-DPQLFVSASFDNSV 124 (183)
Q Consensus 47 ~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i 124 (183)
.+.+|.+.|++++|+|++. |++|+.|++|++||++++.. .....+.+|...|.+++|+|. ++++|++|+.|+.|
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~----~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v 83 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ----ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE----EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc----EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEE
Confidence 4568999999999998765 89999999999999976532 124568899999999999762 47899999999999
Q ss_pred EEEeCCCCC-cceEEeccCCCcEEEEEecC---CcEEEEecCCCcEEEEEecCC
Q psy2113 125 KLWDLRSPK-VPLFDMLGHEDKVMCVNWSD---YRYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 125 ~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~---~~~l~~~~~dg~i~iwd~~~~ 174 (183)
++||++++. .....+.+|...|++++|+| +.+|++++.|+.|++||++..
T Consensus 84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 999999864 23566788999999999996 368999999999999999865
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=154.07 Aligned_cols=155 Identities=17% Similarity=0.215 Sum_probs=120.1
Q ss_pred eceeEEEEEee-cCcEEEEEE----eccCCCCcccccccCccceEEEe---ccCCCeeEEEEccCCe-EEEEeCCCeEEE
Q psy2113 7 GILTLGVIFMT-VGALLTLTN----IEVTSLPSFFQLILQKTPLITLK---GHKEAISAVQWTAVDE-IITSSWDHTLKI 77 (183)
Q Consensus 7 ~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~-l~s~~~d~~v~v 77 (183)
.-.+.+++|+| ++..++.+. +++|++. . .....+. .+...+.+++|+|++. |++|+.|+.|++
T Consensus 164 ~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~ 235 (435)
T 4e54_B 164 GGSITGLKFNPLNTNQFYASSMEGTTRLQDFK-------G-NILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVIL 235 (435)
T ss_dssp SCCCCEEEECSSCTTEEEEECSSSCEEEEETT-------S-CEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEE
T ss_pred CCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc-------C-CceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEee
Confidence 34567889998 577777654 7777542 1 1222222 2344678999998765 889999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcc--eEEeccCCCcEEEEEecCC-
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP--LFDMLGHEDKVMCVNWSDY- 154 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~- 154 (183)
||++... ...+.+|...|.+++|+|++..++++|+.|+.|++||+++.+.. .....+|...|++++|+|+
T Consensus 236 wd~~~~~-------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg 308 (435)
T 4e54_B 236 LNMDGKE-------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308 (435)
T ss_dssp EESSSCB-------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS
T ss_pred eccCcce-------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCC
Confidence 9987543 34577899999999999955668999999999999999886542 2334679999999999965
Q ss_pred cEEEEecCCCcEEEEEecCCCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.+|++++.||.|++||+++++.
T Consensus 309 ~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 309 ARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp SEEEEEESSSCEEEEESSSSSS
T ss_pred CeeEEEcCCCEEEEEECCCCcc
Confidence 8999999999999999987653
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-21 Score=139.39 Aligned_cols=152 Identities=16% Similarity=0.283 Sum_probs=128.5
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
.+.+++|+|++..++++. +.+|+ ....+.+..+..|.+.|.+++|+|++. +++++.|+.|++||+++.
T Consensus 143 ~i~~~~~~~~~~~l~~~~~dg~v~~~d-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 215 (337)
T 1gxr_A 143 ACYALAISPDSKVCFSCCSDGNIAVWD-------LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEE-------TTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred ceEEEEECCCCCEEEEEeCCCcEEEEe-------CCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence 467889999999888775 55553 345667788889999999999998865 889999999999999876
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQ 162 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~ 162 (183)
+. ... ..+...+.+++|+| ++.++++++.|+.|++||+++.+ ...+..|...|.+++|+|+ .++++++.
T Consensus 216 ~~------~~~-~~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 285 (337)
T 1gxr_A 216 RQ------LQQ-HDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp EE------EEE-EECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ce------Eee-ecCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecC
Confidence 53 333 34788899999999 88999999999999999999876 4577889999999999965 89999999
Q ss_pred CCcEEEEEecCCCCC
Q psy2113 163 DNSVRVFKTKHQPKS 177 (183)
Q Consensus 163 dg~i~iwd~~~~~~~ 177 (183)
||.|++||+++++..
T Consensus 286 dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 286 DNLLNAWRTPYGASI 300 (337)
T ss_dssp TSEEEEEETTTCCEE
T ss_pred CCcEEEEECCCCeEE
Confidence 999999999887543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-22 Score=145.87 Aligned_cols=156 Identities=20% Similarity=0.254 Sum_probs=123.3
Q ss_pred eeceeEEEEEee-cCcEEEEEE----eccCCCCcccccccCccceEEEec---cCCCeeEEEEccCCe-EEEEeCCCeEE
Q psy2113 6 FGILTLGVIFMT-VGALLTLTN----IEVTSLPSFFQLILQKTPLITLKG---HKEAISAVQWTAVDE-IITSSWDHTLK 76 (183)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~-l~s~~~d~~v~ 76 (183)
....+.+++|+| ++..++++. +.+|++. ...+..+.. |...|.+++|+|++. |++++.|+.|+
T Consensus 117 h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~ 188 (383)
T 3ei3_B 117 PGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS--------GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL 188 (383)
T ss_dssp TTCBEEEEEEETTEEEEEEEEETTTEEEEEETT--------SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEE
T ss_pred cCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC--------CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEE
Confidence 344677889999 677777765 6677553 233444544 448899999998765 89999999999
Q ss_pred EEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCC-EEEEEeCCCeEEEEeCCCCCc--ceEEeccCCCcEEEEEecC
Q psy2113 77 IWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQ-LFVSASFDNSVKLWDLRSPKV--PLFDMLGHEDKVMCVNWSD 153 (183)
Q Consensus 77 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~ 153 (183)
+||++ .+. ...+..|...|.+++|+| ++. ++++++.|+.|++||+++.+. ......+|...|.+++|+|
T Consensus 189 i~d~~-~~~------~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 260 (383)
T 3ei3_B 189 LLGLD-GHE------IFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNP 260 (383)
T ss_dssp EEETT-SCE------EEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECT
T ss_pred EEECC-CCE------EEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcC
Confidence 99984 322 567888999999999999 666 999999999999999997321 1233337999999999998
Q ss_pred -C-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 154 -Y-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 154 -~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+ .+|++++.|+.|++||+++.+..
T Consensus 261 ~~~~~l~~~~~d~~i~iwd~~~~~~~ 286 (383)
T 3ei3_B 261 TDSTKLLTTDQRNEIRVYSSYDWSKP 286 (383)
T ss_dssp TTSCEEEEEESSSEEEEEETTBTTSC
T ss_pred CCCCEEEEEcCCCcEEEEECCCCccc
Confidence 5 89999999999999999887654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-23 Score=157.94 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=121.2
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEE--EEccCC--eEEEEeCCCeEEEEE
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAV--QWTAVD--EIITSSWDHTLKIWD 79 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~--~l~s~~~d~~v~vwd 79 (183)
..+.+++|++++ .++++. +++|++.. ...+...+.+|.+.|.++ .|++++ .|++|+.|++|+|||
T Consensus 267 ~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~------~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD 339 (524)
T 2j04_B 267 SLITTFDFLSPT-TVVCGFKNGFVAEFDLTD------PEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN 339 (524)
T ss_dssp TCEEEEEESSSS-EEEEEETTSEEEEEETTB------CSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred CCEEEEEecCCC-eEEEEeCCCEEEEEECCC------CCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence 457789999876 455544 77786532 123456788999999999 466765 489999999999999
Q ss_pred cCCCCCccCceeEEEeecCCc--ceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cE
Q psy2113 80 AELGGMKKGAIVKSTFSSHKE--WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RY 156 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 156 (183)
+++.+. ...+.+|.. .|.+++|+| ++..+++++.|+.|++||++++.+ ...+.+|...|++++|+|+ ..
T Consensus 340 ~~~~~~------~~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~-~~~l~gH~~~V~sva~Sp~g~~ 411 (524)
T 2j04_B 340 PKDIAT------TKTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFA-VHPLVSRETTITAIGVSRLHPM 411 (524)
T ss_dssp GGGHHH------HCEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTC-CEEEEECSSCEEEEECCSSCCB
T ss_pred CCCCCc------ccccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECccccc-ceeeecCCCceEEEEeCCCCCe
Confidence 987554 223445543 588999999 788899999999999999999876 5677899999999999976 89
Q ss_pred EEEecCCCcEEEEEecCC
Q psy2113 157 IMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~~ 174 (183)
|++|+.||+|++||+...
T Consensus 412 l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 412 VLAGSADGSLIITNAARR 429 (524)
T ss_dssp CEEEETTTEEECCBSCSS
T ss_pred EEEEECCCEEEEEechHh
Confidence 999999999999998654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.2e-23 Score=150.77 Aligned_cols=167 Identities=16% Similarity=0.261 Sum_probs=126.7
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccc----cccCccceEEEeccC------------CCeeEEEEccCC---
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQ----LILQKTPLITLKGHK------------EAISAVQWTAVD--- 64 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~h~------------~~v~~~~~~~~~--- 64 (183)
-.+.+++|+|++.+++++. +.+|++..... .....+....+.+|. +.|.+++|+|++
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 3577899999999999876 77776543211 011223577888998 889999999875
Q ss_pred eEEEEeCCCeEEEEEcCCCCCccC---------------------------------ceeEEE-eecCCcceEEEEEecC
Q psy2113 65 EIITSSWDHTLKIWDAELGGMKKG---------------------------------AIVKST-FSSHKEWVQSVRWSPI 110 (183)
Q Consensus 65 ~l~s~~~d~~v~vwd~~~~~~~~~---------------------------------~~~~~~-~~~~~~~v~~~~~~p~ 110 (183)
.|++++.|+.|++||+........ ..+... ..+|...|.+++|+|
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~- 187 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS- 187 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT-
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC-
Confidence 599999999999999875322000 000112 357999999999999
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcceE-------EeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCCC
Q psy2113 111 DPQLFVSASFDNSVKLWDLRSPKVPLF-------DMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
++.++++| .|+.|++||+++...... .+.+|...|++++|+|+ .+|++++.||.|++||+++++.
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~ 261 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL 261 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence 88899998 799999999995433233 25689999999999965 7999999999999999998764
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.90 E-value=3.3e-22 Score=147.62 Aligned_cols=168 Identities=20% Similarity=0.375 Sum_probs=130.7
Q ss_pred eeEEEEEeec-CcEEEEEE----eccCCCCccccc---ccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEEEE
Q psy2113 9 LTLGVIFMTV-GALLTLTN----IEVTSLPSFFQL---ILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLKIW 78 (183)
Q Consensus 9 ~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~vw 78 (183)
.+..++|+|+ +.+++++. +.+|++...... .....++..+.+|...|.+++|+|++ .|++|+.||.|++|
T Consensus 130 ~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 209 (430)
T 2xyi_A 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLW 209 (430)
T ss_dssp CCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEE
T ss_pred cEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEE
Confidence 4667899997 56676654 666655321100 12256788899999999999999865 58999999999999
Q ss_pred EcCCCCCc-cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC--cceEEeccCCCcEEEEEecCC-
Q psy2113 79 DAELGGMK-KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK--VPLFDMLGHEDKVMCVNWSDY- 154 (183)
Q Consensus 79 d~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~v~~~~~~~~- 154 (183)
|+...... ........+.+|...|.+++|+|.++.++++++.||.|++||+++.. .+...+..|...|++++|+|.
T Consensus 210 d~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 289 (430)
T 2xyi_A 210 DINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYS 289 (430)
T ss_dssp ETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSC
T ss_pred eCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCC
Confidence 99874321 11112345668999999999999777899999999999999999873 346777899999999999975
Q ss_pred -cEEEEecCCCcEEEEEecCCCC
Q psy2113 155 -RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 155 -~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
..+++|+.||.|++||++....
T Consensus 290 ~~~l~tg~~dg~v~vwd~~~~~~ 312 (430)
T 2xyi_A 290 EFILATGSADKTVALWDLRNLKL 312 (430)
T ss_dssp TTEEEEEETTSEEEEEETTCTTS
T ss_pred CCEEEEEeCCCeEEEEeCCCCCC
Confidence 3789999999999999998543
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-21 Score=141.36 Aligned_cols=160 Identities=21% Similarity=0.327 Sum_probs=128.8
Q ss_pred eceeEEEEEeec--CcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--C-eEEEEeCCCeEEE
Q psy2113 7 GILTLGVIFMTV--GALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--D-EIITSSWDHTLKI 77 (183)
Q Consensus 7 ~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~~~d~~v~v 77 (183)
...+.+++|+++ +..++++. +.+|++.. .....+..+..|...|.+++|+|+ + .+++++.|+.|++
T Consensus 55 ~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 55 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-----GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp SSCEEEEEECCGGGCSEEEEEETTSCEEEEEEET-----TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred CCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCC-----CceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEE
Confidence 345678889877 88888765 66664321 122367778889999999999986 4 4899999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecC------------CCCEEEEEeCCCeEEEEeCCCCCc---ceEEeccC
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI------------DPQLFVSASFDNSVKLWDLRSPKV---PLFDMLGH 142 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------------~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~ 142 (183)
||++...... ...+..|...|.+++|+|. ++.++++++.||.|++||+++... ....+.+|
T Consensus 130 ~d~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h 205 (379)
T 3jrp_A 130 VEFKENGTTS----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 205 (379)
T ss_dssp EECCTTSCCC----EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EecCCCCcee----eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc
Confidence 9998764322 4456789999999999994 478999999999999999987653 24567789
Q ss_pred CCcEEEEEecC----CcEEEEecCCCcEEEEEecCCC
Q psy2113 143 EDKVMCVNWSD----YRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 143 ~~~v~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
...|.+++|+| +.+|++++.||.|++||++...
T Consensus 206 ~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 206 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence 99999999996 4789999999999999999864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-22 Score=145.30 Aligned_cols=158 Identities=21% Similarity=0.346 Sum_probs=122.8
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEE--EeCCCeEEEEEc
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IIT--SSWDHTLKIWDA 80 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s--~~~d~~v~vwd~ 80 (183)
....+.++|++..++.+. +.+|.... .......+.....|...|.+++|+|.+. +++ |+.|+.|++||+
T Consensus 232 ~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~---~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~ 308 (420)
T 4gga_A 232 EVCGLRWAPDGRHLASGGNDNLVNVWPSAP---GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEESSC---CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred ceeeeeecCCCCeeeeeeccccceEEeecc---ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence 456788999999988765 55554432 1123345677788999999999997643 444 457999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe--CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS--FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
.++.. ...+. +...+.++.|+| ++..+++++ .|+.|++||+++++. +..+.+|.+.|++++|+|+ .+|
T Consensus 309 ~t~~~------~~~~~-~~~~v~~~~~~~-~~~~lv~~sg~~d~~I~iwd~~~~~~-v~~l~gH~~~V~~l~~spdg~~l 379 (420)
T 4gga_A 309 CSGAC------LSAVD-AHSQVCSILWSP-HYKELISGHGFAQNQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATV 379 (420)
T ss_dssp TTTEE------EEEEE-CSSCEEEEEEET-TTTEEEEEECTTTCCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCE
T ss_pred Ccccc------ceeec-cccceeeeeecC-CCCeEEEEEecCCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEE
Confidence 88764 44444 456789999999 666666654 689999999999886 8889999999999999975 899
Q ss_pred EEecCCCcEEEEEecCCCCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~~~~ 178 (183)
++|+.|++|++||+.......
T Consensus 380 ~S~s~D~tvriWdv~~~~~~~ 400 (420)
T 4gga_A 380 ASAAADETLRLWRCFELDPAR 400 (420)
T ss_dssp EEEETTTEEEEECCSCSSCC-
T ss_pred EEEecCCeEEEEECCCCCccc
Confidence 999999999999998765443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=150.07 Aligned_cols=155 Identities=14% Similarity=0.164 Sum_probs=121.0
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCC-----CeeEEEEccCCe-EEEEeCCCeEE
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKE-----AISAVQWTAVDE-IITSSWDHTLK 76 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~~~~~~~~~-l~s~~~d~~v~ 76 (183)
.-...+++|+|+|..++++. +.+|+.. ..+..+. |.. .|.+++|+|+|+ |++|+.||+|+
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~---------~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk 154 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN---------KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ 154 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETT---------EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCC---------ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence 34578999999999999876 5666421 1455556 665 599999999987 89999999999
Q ss_pred EEEcCCCCCcc-CceeEEEe----ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc--ceEEe-ccCCCcEEE
Q psy2113 77 IWDAELGGMKK-GAIVKSTF----SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--PLFDM-LGHEDKVMC 148 (183)
Q Consensus 77 vwd~~~~~~~~-~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~-~~~~~~v~~ 148 (183)
+||+..+.... .......+ .+|...|.+++|+| ++ +++++.|+.|++||+.+... ....+ .+|...|.+
T Consensus 155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITD 231 (588)
T ss_dssp EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCC
T ss_pred EEECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEE
Confidence 99998764311 11224454 66788999999999 66 88888999999999988763 12445 478899999
Q ss_pred EEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 149 VNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 149 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
++|+ ++.+++++ +++|++||+..++.
T Consensus 232 vaFs-g~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 232 LKIV-DYKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp EEEE-TTEEEEEC-SSEEEEEETTTTEE
T ss_pred EEEE-CCEEEEEe-CCeEEEEECCCCeE
Confidence 9999 78888887 69999999887654
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-22 Score=144.03 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=104.5
Q ss_pred CccceEEEe-ccCCCeeEEEEcc--CCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEe-ecCCcceEEEEEecCCCCEE
Q psy2113 41 QKTPLITLK-GHKEAISAVQWTA--VDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTF-SSHKEWVQSVRWSPIDPQLF 115 (183)
Q Consensus 41 ~~~~~~~~~-~h~~~v~~~~~~~--~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l 115 (183)
..+.+..+. +|.+.|.+++|+| ++. +++++.|+.|++||+++++. .... ..+...+.+++|+| ++.++
T Consensus 113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~------~~~~~~~~~~~i~~~~~~p-dg~~l 185 (343)
T 3lrv_A 113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ------YIVHSAKSDVEYSSGVLHK-DSLLL 185 (343)
T ss_dssp TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE------EEEECCCSSCCCCEEEECT-TSCEE
T ss_pred CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE------EEEEecCCCCceEEEEECC-CCCEE
Confidence 333344443 6778999999999 765 88899999999999987664 2233 34566899999999 89999
Q ss_pred EEEeCCCeEEEEeCCCCCcceEEecc-CCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 116 VSASFDNSVKLWDLRSPKVPLFDMLG-HEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 116 ~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
++|+.||.|++||+++++.....+.. |..+|++++|+|+ .+|++++ |+.|++||+++.+..
T Consensus 186 asg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 186 ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGT 248 (343)
T ss_dssp EEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTC
T ss_pred EEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcc
Confidence 99999999999999998874367777 9999999999976 7888888 559999999987654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=157.61 Aligned_cols=161 Identities=23% Similarity=0.376 Sum_probs=132.7
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--C-eEEEEeCCCeEEE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--D-EIITSSWDHTLKI 77 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~~~d~~v~v 77 (183)
...-.+.+++|+|++..++++. +.+|++. ......+..+.+|.+.|.+++|+++ + .+++|+.||.|++
T Consensus 7 gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~-----~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v 81 (753)
T 3jro_A 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVE-----GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI 81 (753)
T ss_dssp -CCCCEEEECCCSSSCCEEEEETTTEEEEEEEE-----TTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred cCcceeEEEEECCCCCeEEEEECCCcEEEEecC-----CCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence 3445678889999999888875 6777542 2245667888999999999999864 4 5999999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCC--CCEEEEEeCCCeEEEEeCCCCC-cceEEeccCCCcEEEEEecC-
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID--PQLFVSASFDNSVKLWDLRSPK-VPLFDMLGHEDKVMCVNWSD- 153 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~--~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~v~~~~~~~- 153 (183)
||+.++... ....+.+|...|.+++|+| + +..+++|+.||.|++||+++.. .......+|...|.+++|+|
T Consensus 82 wd~~~~~~~----~~~~~~~h~~~V~~v~~sp-~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~ 156 (753)
T 3jro_A 82 WKEENGRWS----QIAVHAVHSASVNSVQWAP-HEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 156 (753)
T ss_dssp EEEETTEEE----EEEEECCCSSCEEEEEECC-GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCC
T ss_pred EECCCCccc----ccccccCCCCCeEEEEECC-CCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCc
Confidence 999876421 2556778999999999999 6 8899999999999999999873 22556788999999999997
Q ss_pred -------------CcEEEEecCCCcEEEEEecCCC
Q psy2113 154 -------------YRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 154 -------------~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+..+++|+.||.|++||++++.
T Consensus 157 ~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~ 191 (753)
T 3jro_A 157 TIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (753)
T ss_dssp C---------CGGGCCEEEEETTSCEEEEEEETTT
T ss_pred ccccccccccCCCCCEEEEEECCCeEEEEeccCCc
Confidence 4899999999999999998764
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-22 Score=144.53 Aligned_cols=160 Identities=18% Similarity=0.172 Sum_probs=124.6
Q ss_pred ceeEEEEEe----ecCcE-EEEEE----eccCCCCcccccccCccceE-----EE-------eccCCCeeEEEEccCCeE
Q psy2113 8 ILTLGVIFM----TVGAL-LTLTN----IEVTSLPSFFQLILQKTPLI-----TL-------KGHKEAISAVQWTAVDEI 66 (183)
Q Consensus 8 ~~~~~~~~~----~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~-------~~h~~~v~~~~~~~~~~l 66 (183)
..+.+++|+ |++.. ++++. +.+|++...... ...+.+. .+ ..|...|.+++|+|++.+
T Consensus 122 ~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l 200 (397)
T 1sq9_A 122 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE-SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLI 200 (397)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSH-HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTSEE
T ss_pred CcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccc-cccceeeccCcceeeeeeccccCCCCCceEEEECCCceE
Confidence 456788999 99998 77765 666654320000 0022222 55 448899999999987777
Q ss_pred EEEeCCCeEEEEEcCCCCCccCceeEEEeec---C---CcceEEEEEecCCCCEEEEEeCC---CeEEEEeCCCCCcceE
Q psy2113 67 ITSSWDHTLKIWDAELGGMKKGAIVKSTFSS---H---KEWVQSVRWSPIDPQLFVSASFD---NSVKLWDLRSPKVPLF 137 (183)
Q Consensus 67 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~p~~~~~l~~~~~d---g~i~vwd~~~~~~~~~ 137 (183)
++++.|+.|++||+++.+. ...+.. | ...|.+++|+| ++.++++++.| +.|++||+++++. +.
T Consensus 201 ~~~~~dg~i~i~d~~~~~~------~~~~~~~~~h~~~~~~i~~i~~~~-~~~~l~~~~~d~~~g~i~i~d~~~~~~-~~ 272 (397)
T 1sq9_A 201 ATGFNNGTVQISELSTLRP------LYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLYETEFGER-IG 272 (397)
T ss_dssp EEECTTSEEEEEETTTTEE------EEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEEETTTCCE-EE
T ss_pred EEEeCCCcEEEEECCCCce------eEEEeccccccccCCccceEEECC-CCCEEEEEecCCCCceEEEEECCCCcc-cc
Confidence 8899999999999987654 566777 8 99999999999 88999999999 9999999998876 77
Q ss_pred Eecc-------------CCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 138 DMLG-------------HEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 138 ~~~~-------------~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.+.. |...|.+++|+|+ .+|++++.||.|++||+++++.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 325 (397)
T 1sq9_A 273 SLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 325 (397)
T ss_dssp EECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred eeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCce
Confidence 7777 9999999999965 8999999999999999987653
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.9e-22 Score=145.85 Aligned_cols=159 Identities=18% Similarity=0.303 Sum_probs=130.3
Q ss_pred eceeEEEEEeec-CcEEEEEE----eccCCCCcccccccCccceEEEecc------CCCeeEEEEccCC--eEEEEeCCC
Q psy2113 7 GILTLGVIFMTV-GALLTLTN----IEVTSLPSFFQLILQKTPLITLKGH------KEAISAVQWTAVD--EIITSSWDH 73 (183)
Q Consensus 7 ~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~~~~~~~~--~l~s~~~d~ 73 (183)
...+.+++|+|+ +..++++. +.+|++ ...+.+..+..| ...|.+++|+|++ .+++++.|+
T Consensus 165 ~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~-------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~ 237 (416)
T 2pm9_A 165 VDEVISLAWNQSLAHVFASAGSSNFASIWDL-------KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237 (416)
T ss_dssp SCCCCEEEECSSCTTEEEEESSSSCEEEEET-------TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS
T ss_pred CCCeeEEEeCCCCCcEEEEEcCCCCEEEEEC-------CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC
Confidence 345678999999 67777654 666643 345566677666 7899999999885 488999998
Q ss_pred ---eEEEEEcCCCCCccCceeEEEee-cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEE
Q psy2113 74 ---TLKIWDAELGGMKKGAIVKSTFS-SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCV 149 (183)
Q Consensus 74 ---~v~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 149 (183)
.|++||++..... ...+. +|...|.+++|+|.++.++++++.|+.|++||+++++. +..+..|...|.++
T Consensus 238 ~~~~i~~~d~~~~~~~-----~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-~~~~~~~~~~v~~~ 311 (416)
T 2pm9_A 238 NDPSILIWDLRNANTP-----LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-LSQFPARGNWCFKT 311 (416)
T ss_dssp SSCCCCEEETTSTTSC-----SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-EEEEECSSSCCCCE
T ss_pred CCceEEEEeCCCCCCC-----cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-ceeecCCCCceEEE
Confidence 9999999875321 34566 79999999999996788999999999999999999876 78888999999999
Q ss_pred EecCC--cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 150 NWSDY--RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 150 ~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+|+|+ .++++++.||.|++||++......
T Consensus 312 ~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 312 KFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred EECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 99965 699999999999999998876543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=141.12 Aligned_cols=115 Identities=22% Similarity=0.374 Sum_probs=91.8
Q ss_pred eeceeEEEEEeec---CcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEE
Q psy2113 6 FGILTLGVIFMTV---GALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKI 77 (183)
Q Consensus 6 ~~~~~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~v 77 (183)
..-.+.+++|+|+ |..++++. +.+|++.. ........+.+|.+.|.+++|+|++. |++++.|+.|++
T Consensus 38 h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~-----~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~i 112 (368)
T 3mmy_A 38 PDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQD-----SGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKM 112 (368)
T ss_dssp CSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECT-----TSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCC-----CCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEE
Confidence 3456788999999 58887765 66775421 12233367889999999999998865 899999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEE--ecCCCCEEEEEeCCCeEEEEeCCCCC
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRW--SPIDPQLFVSASFDNSVKLWDLRSPK 133 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~p~~~~~l~~~~~dg~i~vwd~~~~~ 133 (183)
||+++... ..+..|...|.+++| +| ++.++++++.||.|++||+++++
T Consensus 113 wd~~~~~~-------~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 113 WDLSSNQA-------IQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp EETTTTEE-------EEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSS
T ss_pred EEcCCCCc-------eeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCc
Confidence 99987653 345679999999999 77 78899999999999999998764
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-21 Score=140.99 Aligned_cols=162 Identities=19% Similarity=0.333 Sum_probs=122.5
Q ss_pred eeEEEEEeecCc---EEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEE
Q psy2113 9 LTLGVIFMTVGA---LLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWD 79 (183)
Q Consensus 9 ~~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd 79 (183)
...++.+++.+. .++++. +.+|+ ....+.+..+.+|.+.|.+++|+|++. +++++.|+.|++||
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d 215 (408)
T 4a11_B 143 TVYSHHMSPVSTKHCLVAVGTRGPKVQLCD-------LKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWD 215 (408)
T ss_dssp CEEEEEECSSCSSCCEEEEEESSSSEEEEE-------SSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred ceeeeEeecCCCCCcEEEEEcCCCeEEEEe-------CCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEE
Confidence 456677777554 666654 55553 345567788899999999999998864 78999999999999
Q ss_pred cCCCCCcc----------CceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc---------------
Q psy2113 80 AELGGMKK----------GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV--------------- 134 (183)
Q Consensus 80 ~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~--------------- 134 (183)
++...... ..........|...|.+++|+| ++.++++++.||.|++||+++++.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 294 (408)
T 4a11_B 216 VRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS-DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKG 294 (408)
T ss_dssp TTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSC
T ss_pred CCCCCcccccccccccccceeeccccccccCceeEEEEcC-CCCEEEEecCCCeEEEEECCCCccceecccccccccccc
Confidence 98654210 0000112256889999999999 889999999999999999986542
Q ss_pred -------------------------------ceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 135 -------------------------------PLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 135 -------------------------------~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
++..+.+|...|++++|+|+ .+|++++.||.|++||+++.+...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 295 LKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp CCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred ceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 24455779999999999976 899999999999999999887654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.90 E-value=8.8e-22 Score=141.91 Aligned_cols=160 Identities=16% Similarity=0.148 Sum_probs=125.2
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
..+.+++|+|++..++++. +.+|++. .........+..|...|.+++|+|++. +++++.|+.+++||++.
T Consensus 53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~-----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~ 127 (372)
T 1k8k_C 53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-----GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 127 (372)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEE-----TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred CcccEEEEeCCCCEEEEEcCCCeEEEEECC-----CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecC
Confidence 4567889999999988866 5556431 111122344467999999999998765 88999999999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC------------------CCCcceEEeccCCC
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR------------------SPKVPLFDMLGHED 144 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~------------------~~~~~~~~~~~~~~ 144 (183)
..... ........|...|.+++|+| ++.++++++.||.|++||++ .++. ...+..|..
T Consensus 128 ~~~~~--~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 203 (372)
T 1k8k_C 128 ENDWW--VCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL-MFESSSSCG 203 (372)
T ss_dssp TTTEE--EEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE-EEECCCCSS
T ss_pred CCcce--eeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh-eEecCCCCC
Confidence 65210 11223356889999999999 88999999999999999964 3333 677779999
Q ss_pred cEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 145 KVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 145 ~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.|.+++|+|+ .+|++++.||.|++||+++++.
T Consensus 204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 236 (372)
T 1k8k_C 204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMA 236 (372)
T ss_dssp CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred eEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence 9999999966 7999999999999999987654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=4e-21 Score=138.01 Aligned_cols=152 Identities=15% Similarity=0.125 Sum_probs=129.0
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~ 83 (183)
...+++|+|++..++++. +.+|++. .....+..+..|...|.+++|+|++. |++++.|+.|++||+++.
T Consensus 177 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 177 AATVAGWSTKGKYIIAGHKDGKISKYDVS------NNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp CEEEEEECGGGCEEEEEETTSEEEEEETT------TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ceeEEEEcCCCCEEEEEcCCCEEEEEECC------CCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 567889999999988865 5566432 12567788889999999999998876 889999999999999877
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC--------------eEEEEeCCCCCcceEEeccCCCcEEEE
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN--------------SVKLWDLRSPKVPLFDMLGHEDKVMCV 149 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~v~~~ 149 (183)
+. ...+. +...+.+++|+| ++.++++++.++ .+++||..+++. ...+.+|...|+++
T Consensus 251 ~~------~~~~~-~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~v~~~ 321 (369)
T 3zwl_B 251 QV------LKKYE-TDCPLNTAVITP-LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE-IGRVQGHFGPLNTV 321 (369)
T ss_dssp CE------EEEEE-CSSCEEEEEECS-SSSEEEEEECCC-------------CEEEEEETTTCCE-EEEEECCSSCEEEE
T ss_pred ce------eeeec-CCCCceeEEecC-CCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc-hhheecccCcEEEE
Confidence 64 33444 788899999999 888999999888 899999999876 77889999999999
Q ss_pred EecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 150 NWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 150 ~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+|+|+ .+|++++.||.|++|+++.+.
T Consensus 322 ~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 322 AISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp EECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred EECCCCCEEEEEcCCCeEEEEECcccc
Confidence 99966 899999999999999998653
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.4e-22 Score=142.14 Aligned_cols=132 Identities=20% Similarity=0.446 Sum_probs=112.0
Q ss_pred ccCccceEEEeccCCCeeEEEEccC----CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCE
Q psy2113 39 ILQKTPLITLKGHKEAISAVQWTAV----DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQL 114 (183)
Q Consensus 39 ~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~ 114 (183)
....+.+..+.+|.+.|++++|+|+ ..|++|+.|+.|++||+.+... .....+.+|...|.+++|+| ++++
T Consensus 26 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~----~~~~~~~~h~~~v~~~~~~~-~~~~ 100 (368)
T 3mmy_A 26 HNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ----TIPKAQQMHTGPVLDVCWSD-DGSK 100 (368)
T ss_dssp SCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC----EEEEEEEECSSCEEEEEECT-TSSE
T ss_pred CCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc----eeEEEeccccCCEEEEEECc-CCCE
Confidence 3455667788999999999999987 3489999999999999986332 11356788999999999999 8899
Q ss_pred EEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEe--cCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 115 FVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW--SDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 115 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
|++++.||.|++||+++++. .....|...|.+++| +++ .++++++.||.|++||+++++..
T Consensus 101 l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 164 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQA--IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164 (368)
T ss_dssp EEEEETTSEEEEEETTTTEE--EEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCS
T ss_pred EEEEcCCCcEEEEEcCCCCc--eeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEE
Confidence 99999999999999998774 456789999999999 655 78999999999999999987644
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-22 Score=148.51 Aligned_cols=154 Identities=12% Similarity=0.228 Sum_probs=122.0
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEec--cCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKG--HKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
+....+++++..++++. +.+|+ ....+.+..+.+ |.+.|.+++|+|++. |++|+.|+.|++||++.
T Consensus 173 ~~~~~~~~~~~~l~~~~~d~~i~iwd-------~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 173 RMRAFVNEEKSLLVALTNLSRVIIFD-------IRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp EEEEEECSSCEEEEEEETTSEEEEEE-------TTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEe-------CCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence 33444667888888766 66664 445677788888 899999999998866 88999999999999987
Q ss_pred CCCccCceeEEEee-cCCcceEEEEEecC---CCCEEEEEeCCCeEEEEeCCCCCcceEEecc-----------------
Q psy2113 83 GGMKKGAIVKSTFS-SHKEWVQSVRWSPI---DPQLFVSASFDNSVKLWDLRSPKVPLFDMLG----------------- 141 (183)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~v~~~~~~p~---~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----------------- 141 (183)
... ...+. .|...|.+++|+|. ++.++++|+.||.|++||+++++. ...+.+
T Consensus 246 ~~~------~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 318 (437)
T 3gre_A 246 NVL------IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC-QYAFINSDEQPSMEHFLPIEKGL 318 (437)
T ss_dssp TEE------EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE-EEEEESSSSCCCGGGGSCBCSSG
T ss_pred ccE------EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE-EEEEEcCCCCCccceeccccccc
Confidence 654 44554 67889999977652 567999999999999999998764 333332
Q ss_pred ---------CCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 142 ---------HEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 142 ---------~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
|...|++++|+++.+|++++.||.|++||+++++..
T Consensus 319 ~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 319 EELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp GGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred ccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccc
Confidence 566788999997789999999999999999887644
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=139.93 Aligned_cols=154 Identities=15% Similarity=0.136 Sum_probs=115.2
Q ss_pred ceeEEEEEee--cCcEEEEEE----eccCCCCcccccccCccceEEEe-ccCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 8 ILTLGVIFMT--VGALLTLTN----IEVTSLPSFFQLILQKTPLITLK-GHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 8 ~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
..+.+++|+| ++..++.+. +.+|++ ...+.+.... .|...|.+++|+|++. |++|+.|+.|++||
T Consensus 126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~-------~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd 198 (343)
T 3lrv_A 126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSY-------EDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYN 198 (343)
T ss_dssp SCEEEEECCC---CCEEEEEETTCCEEEEES-------SSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEE
T ss_pred CCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC-------CCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence 3477899999 999888765 666754 3444444443 3556899999999876 77889999999999
Q ss_pred cCCCCCccCceeEEEeec-CCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc---CCCcE--EEEEecC
Q psy2113 80 AELGGMKKGAIVKSTFSS-HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG---HEDKV--MCVNWSD 153 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~---~~~~v--~~~~~~~ 153 (183)
+++++.. ...+.. |...|.+++|+| ++.++++++ |+.|++||+++.+. ...+.. |...+ .+++|+|
T Consensus 199 ~~~~~~~-----~~~~~~~h~~~v~~l~fs~-~g~~l~s~~-~~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 270 (343)
T 3lrv_A 199 LSSPDQA-----SSRFPVDEEAKIKEVKFAD-NGYWMVVEC-DQTVVCFDLRKDVG-TLAYPTYTIPEFKTGTVTYDIDD 270 (343)
T ss_dssp SSCTTSC-----CEECCCCTTSCEEEEEECT-TSSEEEEEE-SSBEEEEETTSSTT-CBSSCCCBC-----CCEEEEECT
T ss_pred CCCCCCC-----ccEEeccCCCCEEEEEEeC-CCCEEEEEe-CCeEEEEEcCCCCc-ceeecccccccccccceEEEECC
Confidence 9987652 145666 999999999999 889999999 55999999998765 333322 33344 3699996
Q ss_pred C-cEEEEecC-CCcEEEEEecCCCC
Q psy2113 154 Y-RYIMSGGQ-DNSVRVFKTKHQPK 176 (183)
Q Consensus 154 ~-~~l~~~~~-dg~i~iwd~~~~~~ 176 (183)
+ .+|++++. |+.|++|++....+
T Consensus 271 ~g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCCEEEEecCCCCcEEEEEEccccc
Confidence 5 88999888 99999999976654
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-22 Score=148.99 Aligned_cols=116 Identities=13% Similarity=0.202 Sum_probs=98.2
Q ss_pred ccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCc-----ceEEEEEecCCCCEEEEEeCCCe
Q psy2113 50 GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE-----WVQSVRWSPIDPQLFVSASFDNS 123 (183)
Q Consensus 50 ~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~p~~~~~l~~~~~dg~ 123 (183)
.|.+.|.+++|+|+|. |++++.||.|++||... ....+. |.. .+.+++|+| ++++|++|+.||.
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--------~l~~l~-~~~~~~~~sv~svafSP-DG~~LAsgs~DGt 152 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--------MLTNLD-SKGNLSSRTYHCFEWNP-IESSIVVGNEDGE 152 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--------EEEECC-CSSCSTTTCEEEEEECS-SSSCEEEEETTSE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--------eeeecc-CCCccccccEEEEEEcC-CCCEEEEEcCCCE
Confidence 4578899999999987 99999999999999543 244455 555 599999999 8999999999999
Q ss_pred EEEEeCCCCCc------ceEEe----ccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 124 VKLWDLRSPKV------PLFDM----LGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 124 i~vwd~~~~~~------~~~~~----~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|++||+.++.. .+..+ .+|.+.|.+++|+|+. +++++.|+.|++||+..+..
T Consensus 153 VkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~ 214 (588)
T 2j04_A 153 LQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSH 214 (588)
T ss_dssp EEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSS
T ss_pred EEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCcc
Confidence 99999998752 24554 6788899999999888 99999999999999987763
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.8e-21 Score=139.96 Aligned_cols=171 Identities=23% Similarity=0.369 Sum_probs=125.7
Q ss_pred eeceeEEEEEee-cCcEEEEEE----eccCCCCccccccc-CccceEEE-----eccCCCeeEEEEcc-CC-eEEEEeCC
Q psy2113 6 FGILTLGVIFMT-VGALLTLTN----IEVTSLPSFFQLIL-QKTPLITL-----KGHKEAISAVQWTA-VD-EIITSSWD 72 (183)
Q Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~-----~~h~~~v~~~~~~~-~~-~l~s~~~d 72 (183)
..-.+.+++|+| ++..++++. +.+|++........ ........ .+|...|.+++|+| ++ .|++++.|
T Consensus 42 h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d 121 (408)
T 4a11_B 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD 121 (408)
T ss_dssp CSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT
T ss_pred cCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC
Confidence 345677889999 999988876 77776543211000 00000001 25999999999998 44 48999999
Q ss_pred CeEEEEEcCCCCCc--------------------------------------cCceeEEEeecCCcceEEEEEecCCCC-
Q psy2113 73 HTLKIWDAELGGMK--------------------------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQ- 113 (183)
Q Consensus 73 ~~v~vwd~~~~~~~--------------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~- 113 (183)
+.|++||+++.+.. ........+..|...|.+++|+| ++.
T Consensus 122 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 200 (408)
T 4a11_B 122 KTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDY 200 (408)
T ss_dssp SEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTT
T ss_pred CeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCc
Confidence 99999998764321 01122335567889999999999 555
Q ss_pred EEEEEeCCCeEEEEeCCCCCcceEEe---------------ccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 114 LFVSASFDNSVKLWDLRSPKVPLFDM---------------LGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 114 ~l~~~~~dg~i~vwd~~~~~~~~~~~---------------~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
++++++.||.|++||+++...+...+ ..|...|.+++|+|+ .+|++++.||.|++||+++++..
T Consensus 201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 280 (408)
T 4a11_B 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280 (408)
T ss_dssp EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence 79999999999999998876434444 578899999999976 89999999999999999987643
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-22 Score=141.16 Aligned_cols=158 Identities=18% Similarity=0.256 Sum_probs=119.6
Q ss_pred eeEEEE----EeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc---CC-eEEEEeCCCeEE
Q psy2113 9 LTLGVI----FMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA---VD-EIITSSWDHTLK 76 (183)
Q Consensus 9 ~~~~~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~-~l~s~~~d~~v~ 76 (183)
.+.+++ |+|++..++++. +.+|++. ..+. .....|...|.+++|+| ++ .+++++.|+.|+
T Consensus 166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-------~~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~ 237 (357)
T 3i2n_A 166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLR-------NMAL-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFH 237 (357)
T ss_dssp CEEEEEEECCCC-CCCEEEEEETTSEEEEEETT-------TTEE-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEE
T ss_pred ceEEEEEEeccCCCCCEEEEEccCCeEEEEECc-------cCce-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEE
Confidence 344555 788999988875 6666543 2333 34467899999999998 54 489999999999
Q ss_pred EEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCC-EEEEEeCCCeEEEEeCCCCCc------------------ceE
Q psy2113 77 IWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQ-LFVSASFDNSVKLWDLRSPKV------------------PLF 137 (183)
Q Consensus 77 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~vwd~~~~~~------------------~~~ 137 (183)
+||+++........ ...+.+|...|.+++|+| ++. ++++++.||.|++||+++... .+.
T Consensus 238 i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~ 315 (357)
T 3i2n_A 238 VFDMRTQHPTKGFA-SVSEKAHKSTVWQVRHLP-QNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQ 315 (357)
T ss_dssp EEEEEEEETTTEEE-EEEEECCSSCEEEEEEET-TEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEE
T ss_pred EEeCcCCCccccee-eeccCCCcCCEEEEEECC-CCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceee
Confidence 99998755422111 123458999999999999 666 899999999999999986542 256
Q ss_pred EeccCCCcEEEEEecCC-cEEE-EecCCCcEEEEEecCCCC
Q psy2113 138 DMLGHEDKVMCVNWSDY-RYIM-SGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 138 ~~~~~~~~v~~~~~~~~-~~l~-~~~~dg~i~iwd~~~~~~ 176 (183)
.+.+|...|++++|+|+ .+++ +++.||.|++||+.+.+.
T Consensus 316 ~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 316 NVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp EEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred ccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 67889999999999976 6776 899999999999987653
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-21 Score=142.61 Aligned_cols=157 Identities=20% Similarity=0.381 Sum_probs=123.5
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEe--CCCeEEEE
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSS--WDHTLKIW 78 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~--~d~~v~vw 78 (183)
...+.+++|+|++..++++. +.+|++ ...+++..+..|...|.+++|+|++. +++++ .|+.|++|
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~-------~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~ 289 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDA-------RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEET-------TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccC-------CCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence 34567889999999988876 666643 45667788889999999999998653 55654 79999999
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEE--EeCCCeEEEEeCCCCCc-ceEEeccCCCcEEEEEecCC-
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS--ASFDNSVKLWDLRSPKV-PLFDMLGHEDKVMCVNWSDY- 154 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~--~~~dg~i~vwd~~~~~~-~~~~~~~~~~~v~~~~~~~~- 154 (183)
|+++++. ...+ .+...|.+++|+| ++..+++ |+.||.|++||++++.. ....+.+|...|.+++|+|+
T Consensus 290 d~~~~~~------~~~~-~~~~~v~~~~~s~-~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg 361 (401)
T 4aez_A 290 NAATGAR------VNTV-DAGSQVTSLIWSP-HSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDG 361 (401)
T ss_dssp ETTTCCE------EEEE-ECSSCEEEEEECS-SSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTS
T ss_pred ECCCCCE------EEEE-eCCCcEEEEEECC-CCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCC
Confidence 9987764 4344 3677899999999 7888888 44899999999998643 13446789999999999965
Q ss_pred cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
.+|++++.||.|++||+.+++...
T Consensus 362 ~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 362 RILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp SEEEEECTTSEEEEEECCC-----
T ss_pred CEEEEEeCCCcEEEEECCCCcccc
Confidence 899999999999999999877554
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=142.82 Aligned_cols=155 Identities=14% Similarity=0.245 Sum_probs=130.0
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCC---------------eeEEEEccCCeEE
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEA---------------ISAVQWTAVDEII 67 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~~~~~~~~~l~ 67 (183)
...+.+++|+|++..++++. +.+|++ ...+.+..+..+... +.++.|++++.++
T Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (425)
T 1r5m_A 149 RAPIVSVKWNKDGTHIISMDVENVTILWNV-------ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV 221 (425)
T ss_dssp CSCEEEEEECTTSSEEEEEETTCCEEEEET-------TTTEEEEEECCC---------------CCCBSCCEEEETTEEE
T ss_pred CccEEEEEECCCCCEEEEEecCCeEEEEEC-------CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEE
Confidence 34577889999999888765 555643 455666677777666 9999999999999
Q ss_pred EEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEE
Q psy2113 68 TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVM 147 (183)
Q Consensus 68 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 147 (183)
+++.++.|++||++.... ...+..|...|.+++|+| ++.++++++.|+.|++||+++.+. ...+..|...|.
T Consensus 222 ~~~~~g~i~~~d~~~~~~------~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~ 293 (425)
T 1r5m_A 222 IPGPKGAIFVYQITEKTP------TGKLIGHHGPISVLEFND-TNKLLLSASDDGTLRIWHGGNGNS-QNCFYGHSQSIV 293 (425)
T ss_dssp EECGGGCEEEEETTCSSC------SEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEECSSSBSC-SEEECCCSSCEE
T ss_pred EEcCCCeEEEEEcCCCce------eeeeccCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCcc-ceEecCCCccEE
Confidence 999999999999987665 456778999999999999 888999999999999999998876 777888999999
Q ss_pred EEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 148 CVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 148 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+++|+|+..+++++.||.|++||+++++.
T Consensus 294 ~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 322 (425)
T 1r5m_A 294 SASWVGDDKVISCSMDGSVRLWSLKQNTL 322 (425)
T ss_dssp EEEEETTTEEEEEETTSEEEEEETTTTEE
T ss_pred EEEECCCCEEEEEeCCCcEEEEECCCCcE
Confidence 99999766999999999999999987643
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.8e-22 Score=144.53 Aligned_cols=163 Identities=18% Similarity=0.329 Sum_probs=126.7
Q ss_pred ceeEEEEEeec-CcEEEEEE----eccCCCCccccccc--CccceEEEeccCCCeeEEEEccC-C-eEEEEeCCCeEEEE
Q psy2113 8 ILTLGVIFMTV-GALLTLTN----IEVTSLPSFFQLIL--QKTPLITLKGHKEAISAVQWTAV-D-EIITSSWDHTLKIW 78 (183)
Q Consensus 8 ~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~-~-~l~s~~~d~~v~vw 78 (183)
..+.+++|+|+ +.+++++. +.+|++........ .......+..|...|.+++|+|+ + .+++++.|+.|++|
T Consensus 114 ~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iw 193 (416)
T 2pm9_A 114 SSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIW 193 (416)
T ss_dssp SCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEE
T ss_pred cceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEE
Confidence 35678899998 77777764 77787653220000 11122234679999999999987 3 48899999999999
Q ss_pred EcCCCCCccCceeEEEeecC------CcceEEEEEecCCCCEEEEEeCCC---eEEEEeCCCCCcceEEec-cCCCcEEE
Q psy2113 79 DAELGGMKKGAIVKSTFSSH------KEWVQSVRWSPIDPQLFVSASFDN---SVKLWDLRSPKVPLFDML-GHEDKVMC 148 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~p~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~-~~~~~v~~ 148 (183)
|+++.+. ...+..+ ...+.+++|+|++..++++++.|+ .|++||+++...+...+. +|...|.+
T Consensus 194 d~~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 194 DLKAKKE------VIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267 (416)
T ss_dssp ETTTTEE------EEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE
T ss_pred ECCCCCc------ceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeE
Confidence 9987654 4455544 788999999994457999999998 999999998755567777 89999999
Q ss_pred EEecC-C-cEEEEecCCCcEEEEEecCCCC
Q psy2113 149 VNWSD-Y-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 149 ~~~~~-~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
++|+| + .+|++++.||.|++||+++++.
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~ 297 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQ 297 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSCCE
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCCcc
Confidence 99997 4 8999999999999999987654
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-21 Score=136.77 Aligned_cols=144 Identities=12% Similarity=0.111 Sum_probs=104.6
Q ss_pred EEEEee---cCcEEEEEE----eccCCCCcccccccCccceEEEeccC---CCeeEEEEccCCeE-------------EE
Q psy2113 12 GVIFMT---VGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHK---EAISAVQWTAVDEI-------------IT 68 (183)
Q Consensus 12 ~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~l-------------~s 68 (183)
.++|++ ++..++.+. +++| +..+++.+.++.+|. ..+.+++|+|++.+ ++
T Consensus 183 ~l~fs~~~g~~~~LaSgS~D~TIkIW-------Dl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laS 255 (356)
T 2w18_A 183 ILTFAEVQGMQEALLGTTIMNNIVIW-------NLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESL 255 (356)
T ss_dssp EEEEEEEETSTTEEEEEETTSEEEEE-------ETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC----------
T ss_pred eEEeeccCCCCceEEEecCCCcEEEE-------ECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeec
Confidence 445555 456666544 7777 455778888888754 36777899998873 56
Q ss_pred EeCCCeEEEEEcCCCCCccCceeEEEe-----ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCC
Q psy2113 69 SSWDHTLKIWDAELGGMKKGAIVKSTF-----SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHE 143 (183)
Q Consensus 69 ~~~d~~v~vwd~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 143 (183)
|+.|+++++||..+++. ...+ .+|...+.+..+ ++.++++|+.|++|++||+.+++. +..+.+|.
T Consensus 256 Gs~D~tIklWd~~tgk~------l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~-l~tL~gH~ 325 (356)
T 2w18_A 256 RSPVFQLIVINPKTTLS------VGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQC-TALLPPVS 325 (356)
T ss_dssp --CCEEEEEEETTTTEE------EEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSE-EEEECCC-
T ss_pred cCCCcEEEEEECCCCEE------EEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcE-EEEecCCC
Confidence 88999999999987664 2222 356555544443 367899999999999999999987 78888888
Q ss_pred CcEE-EEEecCC-cEEEEecCCCcEEEEEec
Q psy2113 144 DKVM-CVNWSDY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 144 ~~v~-~~~~~~~-~~l~~~~~dg~i~iwd~~ 172 (183)
..+. .++|+|+ ++|++|+.|++|+|||+.
T Consensus 326 ~~vvs~vafSPDG~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 326 DQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp -CCCCEEEECSSSSEEEEECTTSCEEEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEECCCcEEEecCC
Confidence 7665 5899976 899999999999999963
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=148.53 Aligned_cols=154 Identities=14% Similarity=0.140 Sum_probs=109.4
Q ss_pred EeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc--------CCe-EEEEeCCCeEEEEEcC
Q psy2113 15 FMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA--------VDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 15 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~-l~s~~~d~~v~vwd~~ 81 (183)
+.+++.+++.+. +++|+.... .......+..+.+|.+.|++++|+| +++ |++|+.|++|+|||++
T Consensus 97 ~~~~~~~las~~~d~~v~lw~~~~~--~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 97 SPVYSLFLACVCQDNTVRLIITKNE--TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp CCEEEEEEEEEETTSCEEEEEEETT--EEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred cCCCCCEEEEEeCCCcEEEEECCCC--ccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 444555566554 666643211 0111123344678999999999986 444 8999999999999997
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcce------------------------E
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL------------------------F 137 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------------~ 137 (183)
+... ...+..|...+.+++|+|++..++++++.|+.|++||+++++... .
T Consensus 175 ~~~~------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~ 248 (393)
T 4gq1_A 175 DEGP------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTC 248 (393)
T ss_dssp TTEE------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC---
T ss_pred CCce------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeee
Confidence 6654 456678999999999999555689999999999999998775311 1
Q ss_pred EeccCCCcEEEEEec-C-CcEEEEecCCCcEEEEEecCCCC
Q psy2113 138 DMLGHEDKVMCVNWS-D-YRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 138 ~~~~~~~~v~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
...+|...+.++.|. + +..+++++.|+.+++||+...+.
T Consensus 249 ~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 249 HSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND 289 (393)
T ss_dssp ---CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred ecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC
Confidence 124677888999997 4 48999999999999999987654
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=156.25 Aligned_cols=158 Identities=15% Similarity=0.159 Sum_probs=122.3
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
..+.+++|+| +.+++.+. +++|++ ...+.+..+. |.+.|++++|+|++. +++|+.||.|++||+++
T Consensus 59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~-------~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~ 129 (902)
T 2oaj_A 59 SAIKEMRFVK-GIYLVVINAKDTVYVLSL-------YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDR 129 (902)
T ss_dssp CCEEEEEEET-TTEEEEEETTCEEEEEET-------TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTT
T ss_pred CCEEEEEEcC-CCEEEEEECcCeEEEEEC-------CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 3577899999 77666554 777854 3455666665 778999999998866 88999999999999987
Q ss_pred CCCccCcee----E-EEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccC---------------
Q psy2113 83 GGMKKGAIV----K-STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGH--------------- 142 (183)
Q Consensus 83 ~~~~~~~~~----~-~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------- 142 (183)
......... . ..+.+|.+.|.+++|+|+++..+++|+.||.| +||+++.+. ...+..|
T Consensus 130 ~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~-~~~~~~~~~~g~~~~~~~~~~~ 207 (902)
T 2oaj_A 130 DQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEI-KQSFIYELPPFAPGGDFSEKTN 207 (902)
T ss_dssp TEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEE-EEEECCCBCTTCCCSTTCCCTT
T ss_pred CccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCce-EEEEecccCCcCCCcccccccc
Confidence 653100000 0 12367889999999999556789999999999 999998765 5555544
Q ss_pred ---CCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 143 ---EDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 143 ---~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
...|++++|+|+ .+|++++.||.|++||+++++.
T Consensus 208 ~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 208 EKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp SCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred cccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 578999999976 8999999999999999987653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.6e-21 Score=136.61 Aligned_cols=106 Identities=13% Similarity=0.212 Sum_probs=83.6
Q ss_pred EeCCCeEEEEEcCCCCCc---------cCcee-EEEeecCCcceEEEEEecCCCCEEEEEeCCCe-EEEEeCCCCCcceE
Q psy2113 69 SSWDHTLKIWDAELGGMK---------KGAIV-KSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS-VKLWDLRSPKVPLF 137 (183)
Q Consensus 69 ~~~d~~v~vwd~~~~~~~---------~~~~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~-i~vwd~~~~~~~~~ 137 (183)
|+.+|.|++||+.+.... ....+ ...+.+|...|.+++|+| ++.+|++|+.|++ |++||+++++. +.
T Consensus 155 g~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~-~~ 232 (355)
T 3vu4_A 155 EFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVL-VR 232 (355)
T ss_dssp SSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCE-EE
T ss_pred CCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcE-EE
Confidence 456677777776653310 00011 456789999999999999 8999999999998 99999999886 66
Q ss_pred Eec-c-CCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 138 DML-G-HEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 138 ~~~-~-~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.+. + |...|++++|+|+ .+|++++.|++|++||++....
T Consensus 233 ~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~ 274 (355)
T 3vu4_A 233 EFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQD 274 (355)
T ss_dssp EEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSC
T ss_pred EEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCC
Confidence 666 5 9999999999975 8999999999999999987643
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.9e-21 Score=137.20 Aligned_cols=157 Identities=18% Similarity=0.319 Sum_probs=121.3
Q ss_pred eeceeEEEEEeecCc-EEEEE-----E--eccCCCCcccccccCccce-EEEeccCCCeeEEEEccC----CeEEEEeCC
Q psy2113 6 FGILTLGVIFMTVGA-LLTLT-----N--IEVTSLPSFFQLILQKTPL-ITLKGHKEAISAVQWTAV----DEIITSSWD 72 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~-~~~~~-----~--~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~----~~l~s~~~d 72 (183)
..-.+.+++|+|++. +++++ + +.+|++. ..+.. ....+|...|.+++|+|+ ..+++++.|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d 89 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQ-------HGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG 89 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEEC-------SSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCC-------CCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC
Confidence 344678899999995 44444 2 6666432 33222 223379999999999987 459999999
Q ss_pred CeEEEEEcCCCC-CccCceeEEEeecCCcceEEEEE------ecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCC-
Q psy2113 73 HTLKIWDAELGG-MKKGAIVKSTFSSHKEWVQSVRW------SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHED- 144 (183)
Q Consensus 73 ~~v~vwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~------~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~- 144 (183)
+.|++||+.+.+ . ...+.+|...|.++.| +| +++++++++.||.|++||+++...+...+..|..
T Consensus 90 g~i~iwd~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~s~-~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 162 (357)
T 3i2n_A 90 GNLHIWNLEAPEMP------VYSVKGHKEIINAIDGIGGLGIGE-GAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162 (357)
T ss_dssp SCEEEECTTSCSSC------SEEECCCSSCEEEEEEESGGGCC--CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred CeEEEEeCCCCCcc------EEEEEecccceEEEeeccccccCC-CccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence 999999998766 3 5567889999999965 67 7889999999999999999988755677766554
Q ss_pred ---cEEEEE----ecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 145 ---KVMCVN----WSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 145 ---~v~~~~----~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.+.+++ |+++ .++++++.||.|++||+++++.
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 202 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL 202 (357)
T ss_dssp CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE
T ss_pred CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce
Confidence 889998 5544 8999999999999999988654
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=138.22 Aligned_cols=133 Identities=29% Similarity=0.440 Sum_probs=112.0
Q ss_pred cCccceEEEeccCCCeeEEEEccC-C-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEE
Q psy2113 40 LQKTPLITLKGHKEAISAVQWTAV-D-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 117 (183)
Q Consensus 40 ~~~~~~~~~~~h~~~v~~~~~~~~-~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 117 (183)
++.....+|++|.+.|++|+|+|+ + .|++|+.|++|+|||+...+. ....+...+.+|...|.+++|+| +++++++
T Consensus 26 ~~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~-~~~~~~~~l~~h~~~V~~~~~s~-dg~~l~s 103 (340)
T 4aow_A 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET-NYGIPQRALRGHSHFVSDVVISS-DGQFALS 103 (340)
T ss_dssp CEEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS-CSEEEEEEECCCSSCEEEEEECT-TSSEEEE
T ss_pred CceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc-ccceeeEEEeCCCCCEEEEEECC-CCCEEEE
Confidence 344556789999999999999986 3 488999999999999987553 22334567889999999999999 8999999
Q ss_pred EeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 118 ASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 118 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
++.|+.|++|+...... ......+...+..+.+.+. .++++++.|+.+++||+....
T Consensus 104 ~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~ 161 (340)
T 4aow_A 104 GSWDGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVC 161 (340)
T ss_dssp EETTSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred EcccccceEEeecccce-eeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCc
Confidence 99999999999998765 6667778888888888855 899999999999999987543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.88 E-value=9.4e-21 Score=144.65 Aligned_cols=153 Identities=16% Similarity=0.246 Sum_probs=129.5
Q ss_pred eceeEEEEEeecCcEEEEEE--------eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--eEEEEeCCCeEE
Q psy2113 7 GILTLGVIFMTVGALLTLTN--------IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWDHTLK 76 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d~~v~ 76 (183)
.....+++|+|++..++++. +.+|+ ..+.+..+.+|...|.+++|+|++ .+++++.|+.|+
T Consensus 116 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~ 186 (615)
T 1pgu_A 116 AGPISDISWDFEGRRLCVVGEGRDNFGVFISWD---------SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVV 186 (615)
T ss_dssp SSCEEEEEECTTSSEEEEEECCSSCSEEEEETT---------TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEE
T ss_pred cccEEEEEEeCCCCEEEEeccCCCCccEEEEEE---------CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEE
Confidence 34567889999999988764 33332 445677889999999999999887 589999999999
Q ss_pred EEEcCCCCCccCceeEEEeecCCc---ceEEEEEecCC-CCEEEEEeCCCeEEEEeCCCCCcceEEe-c---cCCCcEEE
Q psy2113 77 IWDAELGGMKKGAIVKSTFSSHKE---WVQSVRWSPID-PQLFVSASFDNSVKLWDLRSPKVPLFDM-L---GHEDKVMC 148 (183)
Q Consensus 77 vwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~---~~~~~v~~ 148 (183)
+||+.+.+. ...+.+|.. .|.+++|+| + ++++++++.||.|++||+++++. ...+ . .|...|.+
T Consensus 187 vwd~~~~~~------~~~~~~~~~~~~~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~v~~ 258 (615)
T 1pgu_A 187 FYQGPPFKF------SASDRTHHKQGSFVRDVEFSP-DSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFA 258 (615)
T ss_dssp EEETTTBEE------EEEECSSSCTTCCEEEEEECS-TTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEE
T ss_pred EEeCCCcce------eeeecccCCCCceEEEEEECC-CCCCEEEEEeCCCeEEEEECCCCCE-eEEecccccccCCceEE
Confidence 999877654 567788988 999999999 6 89999999999999999999876 5666 5 89999999
Q ss_pred EEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 149 VNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 149 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
++|+++.++++++.||.|++||+++++.
T Consensus 259 ~~~~~~~~l~~~~~d~~i~~wd~~~~~~ 286 (615)
T 1pgu_A 259 LSWLDSQKFATVGADATIRVWDVTTSKC 286 (615)
T ss_dssp EEESSSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEEcCCCEEEEEcCCCcEEEEECCCCcE
Confidence 9999448999999999999999987643
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=144.41 Aligned_cols=161 Identities=9% Similarity=0.120 Sum_probs=120.9
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccc----cccCccceEEEe--c--cCCCeeEEEEc--cCCe-EEEEeC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQ----LILQKTPLITLK--G--HKEAISAVQWT--AVDE-IITSSW 71 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~--~--h~~~v~~~~~~--~~~~-l~s~~~ 71 (183)
...+.+++|+|++..++++. +++|++..... .......+..+. . +...+.++.+. +++. +++++.
T Consensus 111 ~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 190 (437)
T 3gre_A 111 SSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTN 190 (437)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEET
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeC
Confidence 44578899999999888765 77776531100 000111222222 1 45567777744 5554 899999
Q ss_pred CCeEEEEEcCCCCCccCceeEEEeec--CCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec-cCCCcEEE
Q psy2113 72 DHTLKIWDAELGGMKKGAIVKSTFSS--HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML-GHEDKVMC 148 (183)
Q Consensus 72 d~~v~vwd~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~ 148 (183)
|+.|++||+++.+. ...+.. |...|.+++|+| ++.++++|+.||.|++||+++++. +..+. .|...|.+
T Consensus 191 d~~i~iwd~~~~~~------~~~~~~~~h~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~ 262 (437)
T 3gre_A 191 LSRVIIFDIRTLER------LQIIENSPRHGAVSSICIDE-ECCVLILGTTRGIIDIWDIRFNVL-IRSWSFGDHAPITH 262 (437)
T ss_dssp TSEEEEEETTTCCE------EEEEECCGGGCCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEE-EEEEBCTTCEEEEE
T ss_pred CCeEEEEeCCCCee------eEEEccCCCCCceEEEEECC-CCCEEEEEcCCCeEEEEEcCCccE-EEEEecCCCCceEE
Confidence 99999999988765 556666 889999999999 899999999999999999998765 55554 78889999
Q ss_pred EEecC----C-cEEEEecCCCcEEEEEecCCC
Q psy2113 149 VNWSD----Y-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 149 ~~~~~----~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
++|+| + .++++++.||.|++||+++++
T Consensus 263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~ 294 (437)
T 3gre_A 263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH 294 (437)
T ss_dssp EEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred EEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence 97763 3 599999999999999998765
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=155.08 Aligned_cols=151 Identities=9% Similarity=0.123 Sum_probs=122.1
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~ 83 (183)
-.+.+++|+|++.+++++. +++|+.. ..+.... ..|...|.+++|+|+..|++++.|++|++||++++
T Consensus 18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~-------~~~~~~~-~~~~~~V~~l~fspg~~L~S~s~D~~v~lWd~~~~ 89 (902)
T 2oaj_A 18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQ-------QVEVVIK-LEDRSAIKEMRFVKGIYLVVINAKDTVYVLSLYSQ 89 (902)
T ss_dssp SCEEEEEEETTTTEEEEEETTSEEEEECST-------TCEEEEE-CSSCCCEEEEEEETTTEEEEEETTCEEEEEETTTC
T ss_pred CCcEEEEECCCCCEEEEEeCCCEEEEEeCC-------CcEEEEE-cCCCCCEEEEEEcCCCEEEEEECcCeEEEEECCCC
Confidence 3578899999999999876 7777543 2222233 34788999999999444999999999999999876
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcce----------EEeccCCCcEEEEEecC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL----------FDMLGHEDKVMCVNWSD 153 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~v~~~~~~~ 153 (183)
+. ...+. |...|++++|+| +++++++|+.||.|++||+++..... ....+|.+.|++++|+|
T Consensus 90 ~~------~~~~~-~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp 161 (902)
T 2oaj_A 90 KV------LTTVF-VPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNP 161 (902)
T ss_dssp SE------EEEEE-CSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEET
T ss_pred cE------EEEEc-CCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEcc
Confidence 64 44454 678899999999 89999999999999999999875311 22367889999999998
Q ss_pred C--cEEEEecCCCcEEEEEecCCC
Q psy2113 154 Y--RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 154 ~--~~l~~~~~dg~i~iwd~~~~~ 175 (183)
. ..+++|+.||.| +||+++++
T Consensus 162 ~~~~~l~~g~~dg~v-lWd~~~~~ 184 (902)
T 2oaj_A 162 RDIGTVLISYEYVTL-TYSLVENE 184 (902)
T ss_dssp TEEEEEEEECSSCEE-EEETTTTE
T ss_pred CCCCEEEEEeCCCcE-EEECCCCc
Confidence 5 689999999999 99998764
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.2e-21 Score=148.93 Aligned_cols=160 Identities=21% Similarity=0.327 Sum_probs=129.2
Q ss_pred eceeEEEEEeec--CcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC--C-eEEEEeCCCeEEE
Q psy2113 7 GILTLGVIFMTV--GALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV--D-EIITSSWDHTLKI 77 (183)
Q Consensus 7 ~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~~~d~~v~v 77 (183)
.-.+.+++|+|+ +..++++. +.+|++.. .....+..+.+|...|.+++|+|+ + .+++|+.||.|++
T Consensus 53 ~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~-----~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~v 127 (753)
T 3jro_A 53 EGPVWRVDWAHPKFGTILASCSYDGKVLIWKEEN-----GRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127 (753)
T ss_dssp SSCEEEEEECCTTSCSEEEEEETTSCEEEEEEET-----TEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEE
T ss_pred cCceEEEEecCCCCCCEEEEEeCCCeEEEEECCC-----CcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEE
Confidence 345678899988 88887766 66665321 122367788899999999999986 4 4899999999999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecC------------CCCEEEEEeCCCeEEEEeCCCCCc---ceEEeccC
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI------------DPQLFVSASFDNSVKLWDLRSPKV---PLFDMLGH 142 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~------------~~~~l~~~~~dg~i~vwd~~~~~~---~~~~~~~~ 142 (183)
||++...... ...+.+|...|.+++|+|. ++.++++|+.||.|++||++++.. +...+.+|
T Consensus 128 wdl~~~~~~~----~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h 203 (753)
T 3jro_A 128 VEFKENGTTS----PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203 (753)
T ss_dssp EECCSSSCCC----CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred EEeecCCCcc----eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence 9998764322 3456789999999999994 378999999999999999988752 24567889
Q ss_pred CCcEEEEEecCC----cEEEEecCCCcEEEEEecCCC
Q psy2113 143 EDKVMCVNWSDY----RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 143 ~~~v~~~~~~~~----~~l~~~~~dg~i~iwd~~~~~ 175 (183)
...|++++|+|+ .++++++.||.|++||++++.
T Consensus 204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 999999999954 789999999999999999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-21 Score=150.36 Aligned_cols=157 Identities=20% Similarity=0.387 Sum_probs=130.7
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
...+.+++|+|++..++++. +.+|+ ...++.+..+.+|.+.|.+++|+|++. +++++.|+.|++||++
T Consensus 55 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~-------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~ 127 (814)
T 3mkq_A 55 ETPVRAGKFIARKNWIIVGSDDFRIRVFN-------YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE 127 (814)
T ss_dssp SSCEEEEEEEGGGTEEEEEETTSEEEEEE-------TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGG
T ss_pred CCcEEEEEEeCCCCEEEEEeCCCeEEEEE-------CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECC
Confidence 34567899999999988876 66664 446677888999999999999998875 8999999999999997
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC--C-cEEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD--Y-RYIM 158 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~l~ 158 (183)
++.. ....+.+|...|.+++|+|.++..+++++.||.|++||++++.........+...+..++|+| + .+++
T Consensus 128 ~~~~-----~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 202 (814)
T 3mkq_A 128 NNWA-----LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMI 202 (814)
T ss_dssp GTSE-----EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEE
T ss_pred CCce-----EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEE
Confidence 6532 255678899999999999966789999999999999999887763444444558999999996 4 8999
Q ss_pred EecCCCcEEEEEecCCC
Q psy2113 159 SGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~ 175 (183)
+++.||.|++||+++++
T Consensus 203 ~~~~dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 203 TASDDLTIKIWDYQTKS 219 (814)
T ss_dssp EECTTSEEEEEETTTTE
T ss_pred EEeCCCEEEEEECCCCc
Confidence 99999999999988764
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-21 Score=136.93 Aligned_cols=155 Identities=12% Similarity=0.117 Sum_probs=123.8
Q ss_pred eeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEE
Q psy2113 6 FGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWD 79 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd 79 (183)
..-.+.+++|+|++..++++. +.+|++... ........+.+|...|.+++|+|++. |++++.|+.|++||
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQ----AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETT----TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCC----CccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 344678899999999888765 666654311 11123455668999999999998765 88999999999999
Q ss_pred c-CCCCCccCceeEEEeec--CCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCC---------CCcceEEeccCCCcEE
Q psy2113 80 A-ELGGMKKGAIVKSTFSS--HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRS---------PKVPLFDMLGHEDKVM 147 (183)
Q Consensus 80 ~-~~~~~~~~~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~---------~~~~~~~~~~~~~~v~ 147 (183)
+ .... ...+.+ |...|.+++|+| +.++++++.|+.|++||+++ .+. +..+. |...|.
T Consensus 86 ~~~~~~-------~~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~ 154 (342)
T 1yfq_A 86 LIGSPS-------FQALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIF 154 (342)
T ss_dssp SSSSSS-------EEECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEE
T ss_pred eccCCc-------eEeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceE
Confidence 9 7654 356777 999999999999 67999999999999999987 553 33444 889999
Q ss_pred EEEecCCcEEEEecCCCcEEEEEecC-CCC
Q psy2113 148 CVNWSDYRYIMSGGQDNSVRVFKTKH-QPK 176 (183)
Q Consensus 148 ~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~ 176 (183)
+++|+++. +++++.|+.|++||+++ ...
T Consensus 155 ~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~ 183 (342)
T 1yfq_A 155 TMDTNSSR-LIVGMNNSQVQWFRLPLCEDD 183 (342)
T ss_dssp EEEECSSE-EEEEESTTEEEEEESSCCTTC
T ss_pred EEEecCCc-EEEEeCCCeEEEEECCccccc
Confidence 99999866 99999999999999998 443
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=140.22 Aligned_cols=121 Identities=13% Similarity=0.133 Sum_probs=100.7
Q ss_pred ccCCCeeEEEEccCCe-E-EEEeCCCeEEEEEcC--CCCCccCceeEEEee--cCCcceEEEEEecCCCCEEEEEeCCCe
Q psy2113 50 GHKEAISAVQWTAVDE-I-ITSSWDHTLKIWDAE--LGGMKKGAIVKSTFS--SHKEWVQSVRWSPIDPQLFVSASFDNS 123 (183)
Q Consensus 50 ~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~--~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~ 123 (183)
+|.+.|.+++|+|++. | ++++.|+.|++||+. ++.. ...+. .|...|.+++|+| ++.+|++|+.||.
T Consensus 100 ~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~------~~~~~~~~~~~~v~~~~~sp-~~~~l~~~~~~g~ 172 (450)
T 2vdu_B 100 PIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV------LKLRKRFCFSKRPNAISIAE-DDTTVIIADKFGD 172 (450)
T ss_dssp CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC------EEEEEEEECSSCEEEEEECT-TSSEEEEEETTSE
T ss_pred ccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce------eeeeecccCCCCceEEEEcC-CCCEEEEEeCCCc
Confidence 4566899999999876 4 788899999999998 5544 33443 5778999999999 8899999999999
Q ss_pred EEEEeCCCCCc---ceEEeccCCCcEEEEEecC----CcEEEEecCCCcEEEEEecCCCCC
Q psy2113 124 VKLWDLRSPKV---PLFDMLGHEDKVMCVNWSD----YRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 124 i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+++|++.+... +...+.+|...|++++|+| +.+|++++.|+.|++||+++++..
T Consensus 173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~ 233 (450)
T 2vdu_B 173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIV 233 (450)
T ss_dssp EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCE
T ss_pred EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCcee
Confidence 99999987764 1236778999999999995 459999999999999999877543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.2e-21 Score=145.63 Aligned_cols=160 Identities=14% Similarity=0.213 Sum_probs=124.7
Q ss_pred eeEEEEEeecCcEEEEEE---eccCCCCcccccccCc----cceEEEeccCCC-eeEEEEcc--CCe-EEEEeCCCeEEE
Q psy2113 9 LTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQK----TPLITLKGHKEA-ISAVQWTA--VDE-IITSSWDHTLKI 77 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~h~~~-v~~~~~~~--~~~-l~s~~~d~~v~v 77 (183)
.+.+++|+|++..++.+. +.+|++ ... +....+.+|.+. |.+++|+| ++. |++++.|+.|++
T Consensus 20 ~v~~~~~spdg~~l~~~~~~~v~v~~~-------~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~v 92 (615)
T 1pgu_A 20 FTTHLSYDPTTNAIAYPCGKSAFVRCL-------DDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIV 92 (615)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEEC-------CSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEC-------CCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEE
Confidence 356788999999988876 555543 344 678889999999 99999999 876 889999999999
Q ss_pred EEcCCC--------CCcc--------------------------------------CceeEEEeecCCcceEEEEEecCC
Q psy2113 78 WDAELG--------GMKK--------------------------------------GAIVKSTFSSHKEWVQSVRWSPID 111 (183)
Q Consensus 78 wd~~~~--------~~~~--------------------------------------~~~~~~~~~~~~~~v~~~~~~p~~ 111 (183)
||+.++ .... .......+.+|...|.+++|+| +
T Consensus 93 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~-~ 171 (615)
T 1pgu_A 93 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQ-S 171 (615)
T ss_dssp EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECS-S
T ss_pred EeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECC-C
Confidence 999633 1100 0011223345667778888888 4
Q ss_pred CC-EEEEEeCCCeEEEEeCCCCCcceEEeccCCC---cEEEEEecCC--cEEEEecCCCcEEEEEecCCCCC
Q psy2113 112 PQ-LFVSASFDNSVKLWDLRSPKVPLFDMLGHED---KVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 112 ~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+. .+++++.|+.|++||+++.+. ...+.+|.. .|.+++|+|+ .++++++.||.|++||+++++..
T Consensus 172 ~~~~l~~~~~d~~v~vwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 242 (615)
T 1pgu_A 172 RPMRSMTVGDDGSVVFYQGPPFKF-SASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 242 (615)
T ss_dssp SSCEEEEEETTTEEEEEETTTBEE-EEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE
T ss_pred CCcEEEEEeCCCcEEEEeCCCcce-eeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe
Confidence 44 899999999999999998775 778888998 9999999954 78999999999999999877643
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-20 Score=138.91 Aligned_cols=147 Identities=22% Similarity=0.334 Sum_probs=121.4
Q ss_pred eecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCcee
Q psy2113 16 MTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIV 91 (183)
Q Consensus 16 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~ 91 (183)
.+++..++++. +++|+ ....+.+..+.+|.+.|.+++|++++.+++|+.|++|++||+++++.
T Consensus 129 ~~~~~~l~sgs~dg~i~vwd-------~~~~~~~~~~~~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~------ 195 (464)
T 3v7d_B 129 QFEDNYVITGADDKMIRVYD-------SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCC------ 195 (464)
T ss_dssp EEETTEEEEEETTSCEEEEE-------TTTTEEEEEECCCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEE------
T ss_pred EECCCEEEEEcCCCcEEEEE-------CCCCcEEEEEeCCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcE------
Confidence 33566776655 77774 45667788899999999999999988999999999999999987764
Q ss_pred EEEeecCCcceEEEEEecC-CCCEEEEEeCCCeEEEEeCCCCCcc----------------------eEEeccCCCcEEE
Q psy2113 92 KSTFSSHKEWVQSVRWSPI-DPQLFVSASFDNSVKLWDLRSPKVP----------------------LFDMLGHEDKVMC 148 (183)
Q Consensus 92 ~~~~~~~~~~v~~~~~~p~-~~~~l~~~~~dg~i~vwd~~~~~~~----------------------~~~~~~~~~~v~~ 148 (183)
...+.+|...|.+++|+|. ++.++++|+.|+.|++||+++.... .....+|...|.+
T Consensus 196 ~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 275 (464)
T 3v7d_B 196 THVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275 (464)
T ss_dssp EEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE
T ss_pred EEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE
Confidence 6678889999999999852 5689999999999999999976532 4467788899988
Q ss_pred EEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 149 VNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 149 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+... +.++++++.||.|++||+++++.
T Consensus 276 ~~~~-~~~l~~~~~d~~i~vwd~~~~~~ 302 (464)
T 3v7d_B 276 VSGH-GNIVVSGSYDNTLIVWDVAQMKC 302 (464)
T ss_dssp EEEE-TTEEEEEETTSCEEEEETTTTEE
T ss_pred EcCC-CCEEEEEeCCCeEEEEECCCCcE
Confidence 8544 47999999999999999987653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=139.49 Aligned_cols=157 Identities=20% Similarity=0.361 Sum_probs=124.4
Q ss_pred eEEEEEe--ecCcEEEEEE----eccCCCCcccccc----------------cCccceEEEeccCCCeeEEEEccCCeEE
Q psy2113 10 TLGVIFM--TVGALLTLTN----IEVTSLPSFFQLI----------------LQKTPLITLKGHKEAISAVQWTAVDEII 67 (183)
Q Consensus 10 ~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~----------------~~~~~~~~~~~h~~~v~~~~~~~~~~l~ 67 (183)
+.+++|+ +++..++++. +.+|++....... .....+..+.+|...|.++.. .+..++
T Consensus 206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~ 284 (464)
T 3v7d_B 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG-HGNIVV 284 (464)
T ss_dssp EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE-ETTEEE
T ss_pred cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC-CCCEEE
Confidence 3445555 5777777765 6667654321110 111136678889999988853 235699
Q ss_pred EEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEE
Q psy2113 68 TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVM 147 (183)
Q Consensus 68 s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 147 (183)
+++.|+.|++||+++.+. ...+.+|...|.+++|+| ++.++++|+.||.|++||+++++. +..+.+|...|.
T Consensus 285 ~~~~d~~i~vwd~~~~~~------~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~ 356 (464)
T 3v7d_B 285 SGSYDNTLIVWDVAQMKC------LYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVG 356 (464)
T ss_dssp EEETTSCEEEEETTTTEE------EEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEE
T ss_pred EEeCCCeEEEEECCCCcE------EEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcE-EEEEeCCCCcEE
Confidence 999999999999987664 667888999999999999 889999999999999999999876 788899999999
Q ss_pred EEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 148 CVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 148 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
++.|++ .++++++.||.|++||+++...
T Consensus 357 ~~~~~~-~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 357 LLRLSD-KFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp EEEECS-SEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEcC-CEEEEEeCCCcEEEEECCCCce
Confidence 999984 7999999999999999987653
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.1e-21 Score=141.70 Aligned_cols=160 Identities=17% Similarity=0.261 Sum_probs=120.4
Q ss_pred eceeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceE-------EEeccCCCeeEEEEccCC--eEEEEeCCCe
Q psy2113 7 GILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLI-------TLKGHKEAISAVQWTAVD--EIITSSWDHT 74 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~~~h~~~v~~~~~~~~~--~l~s~~~d~~ 74 (183)
...+.+++|+|++..++.+. +.+|++.. ....+. .+.+|...|.+++|+|++ .|++|+.|+.
T Consensus 177 ~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 177 TYHINSISINSDYETYLSADDLRINLWHLEI------TDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT 250 (447)
T ss_dssp SSCCCEEEECTTSSEEEEECSSEEEEEETTE------EEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC
T ss_pred CcceEEEEEcCCCCEEEEeCCCeEEEEECCC------CCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe
Confidence 34567899999999888764 66665431 112222 256899999999999876 4899999999
Q ss_pred EEEEEcCCCCCccCceeEEEeecCCc------------ceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccC
Q psy2113 75 LKIWDAELGGMKKGAIVKSTFSSHKE------------WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGH 142 (183)
Q Consensus 75 v~vwd~~~~~~~~~~~~~~~~~~~~~------------~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 142 (183)
|++||+++...... ....+..|.. .|.+++|+| ++.++++++. +.|++||+++...++..+.+|
T Consensus 251 i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 251 IRLCDMRASALCDR--HSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEEETTTCSSSCT--TCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTCCSSCSCCEESC
T ss_pred EEEEECcCCccccc--eeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCCCccccceeecc
Confidence 99999987663111 1234556665 899999999 8999999998 999999999733336677777
Q ss_pred CCc---------------EEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 143 EDK---------------VMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 143 ~~~---------------v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
... +..++|+|+ .+|++|+.||.|++||+++++.
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~ 376 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRD 376 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCE
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcc
Confidence 532 334899966 8999999999999999987653
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-20 Score=136.86 Aligned_cols=150 Identities=21% Similarity=0.332 Sum_probs=123.4
Q ss_pred EEEEEeecCcEEEEEE---eccCCCCcccccccCccceEE--EeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 11 LGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLIT--LKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
.-++|++.+ +++++. +++|+. .+++.... +.+|...|++|+|+|++. |++|+.|+.|++||+++++
T Consensus 109 ~~l~wS~~n-~lAvgld~tV~lWd~-------~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~ 180 (420)
T 4gga_A 109 NLVDWSSGN-VLAVALDNSVYLWSA-------SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK 180 (420)
T ss_dssp BCEEECTTS-EEEEEETTEEEEEET-------TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred eeEEECCCC-EEEEEeCCEEEEEEC-------CCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc
Confidence 346788765 666654 777743 44444444 456788999999998876 8899999999999998876
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQD 163 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d 163 (183)
. ...+.+|...+.+++++ +.++++|+.|+.+++||.+.....+..+.+|...+..+.|.+. .++++++.|
T Consensus 181 ~------~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D 251 (420)
T 4gga_A 181 R------LRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND 251 (420)
T ss_dssp E------EEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred E------EEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeecc
Confidence 5 66788999999998885 4699999999999999999877767888999999999999965 899999999
Q ss_pred CcEEEEEecCCCCC
Q psy2113 164 NSVRVFKTKHQPKS 177 (183)
Q Consensus 164 g~i~iwd~~~~~~~ 177 (183)
+.+++||...++..
T Consensus 252 ~~v~i~~~~~~~~~ 265 (420)
T 4gga_A 252 NLVNVWPSAPGEGG 265 (420)
T ss_dssp SCEEEEESSCCSSC
T ss_pred ccceEEeecccccc
Confidence 99999999877543
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-20 Score=136.40 Aligned_cols=144 Identities=27% Similarity=0.403 Sum_probs=120.9
Q ss_pred EeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCce
Q psy2113 15 FMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAI 90 (183)
Q Consensus 15 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~ 90 (183)
+.+++..++++. +.+|+ ..+.+.+..+.+|.+.|.+++| .++.+++|+.||.|++||+.+++.
T Consensus 139 ~~~d~~~l~~g~~dg~i~iwd-------~~~~~~~~~~~~h~~~v~~l~~-~~~~l~sg~~dg~i~vwd~~~~~~----- 205 (435)
T 1p22_A 139 LQYDDQKIVSGLRDNTIKIWD-------KNTLECKRILTGHTGSVLCLQY-DERVIITGSSDSTVRVWDVNTGEM----- 205 (435)
T ss_dssp EECCSSEEEEEESSSCEEEEE-------SSSCCEEEEECCCSSCEEEEEC-CSSEEEEEETTSCEEEEESSSCCE-----
T ss_pred EEECCCEEEEEeCCCeEEEEe-------CCCCeEEEEEcCCCCcEEEEEE-CCCEEEEEcCCCeEEEEECCCCcE-----
Confidence 344788887765 66664 4466778889999999999999 456799999999999999988765
Q ss_pred eEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcce--EEeccCCCcEEEEEecCCcEEEEecCCCcEEE
Q psy2113 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL--FDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRV 168 (183)
Q Consensus 91 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~i 168 (183)
...+.+|...|.+++|++ ..+++|+.||.|++||++++.... ..+.+|...|.+++| ++.++++|+.||.|++
T Consensus 206 -~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 206 -LNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF-DDKYIVSASGDRTIKV 280 (435)
T ss_dssp -EEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-ETTEEEEEETTSEEEE
T ss_pred -EEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-CCCEEEEEeCCCeEEE
Confidence 667888999999999965 499999999999999999876522 667899999999999 5589999999999999
Q ss_pred EEecCCCC
Q psy2113 169 FKTKHQPK 176 (183)
Q Consensus 169 wd~~~~~~ 176 (183)
||+++++.
T Consensus 281 wd~~~~~~ 288 (435)
T 1p22_A 281 WNTSTCEF 288 (435)
T ss_dssp EETTTCCE
T ss_pred EECCcCcE
Confidence 99987654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-21 Score=144.16 Aligned_cols=161 Identities=14% Similarity=0.190 Sum_probs=115.8
Q ss_pred eEEEEEeecCcEEEEEE---eccCCCCcccc---------cccCccceEEEeccCCCeeEEEEccCCe-EE----EEeCC
Q psy2113 10 TLGVIFMTVGALLTLTN---IEVTSLPSFFQ---------LILQKTPLITLKGHKEAISAVQWTAVDE-II----TSSWD 72 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---------~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~----s~~~d 72 (183)
+..+++++.+.+++++. +.++....... ..........+ .+...|.+++|+|++. |+ +++.|
T Consensus 39 ~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sgs~d 117 (434)
T 2oit_A 39 SSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSSEYG 117 (434)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred ccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence 45567888888887766 33322111000 00001111222 3567899999998876 66 67889
Q ss_pred CeEEEEEcCCC-----CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEE
Q psy2113 73 HTLKIWDAELG-----GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVM 147 (183)
Q Consensus 73 ~~v~vwd~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 147 (183)
+.|++||+++. +..........+.+|...|.+++|+|+++.++++++.||.|++||++++.. .....+|...|.
T Consensus 118 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-~~~~~~~~~~v~ 196 (434)
T 2oit_A 118 SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-VCATLPSTVAVT 196 (434)
T ss_dssp EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-EEEEECGGGCEE
T ss_pred ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-eeeccCCCCcee
Confidence 99999998654 111111223456679999999999995488999999999999999998754 555667889999
Q ss_pred EEEecCC-cEEEEecCCCcEEEEEec
Q psy2113 148 CVNWSDY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 148 ~~~~~~~-~~l~~~~~dg~i~iwd~~ 172 (183)
+++|+|+ .+|++|+.||.|++||++
T Consensus 197 ~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 197 SVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECTT
T ss_pred EEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 9999965 899999999999999988
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-20 Score=136.84 Aligned_cols=143 Identities=29% Similarity=0.455 Sum_probs=120.9
Q ss_pred EEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCc
Q psy2113 14 IFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGA 89 (183)
Q Consensus 14 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 89 (183)
++.+++..++++. +++|+ ....+.+..+.+|.+.|.++.|+ ++.+++|+.|+.|++||+.+++.
T Consensus 124 ~~~~~g~~l~sg~~dg~i~vwd-------~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~---- 191 (445)
T 2ovr_B 124 CLQFCGNRIVSGSDDNTLKVWS-------AVTGKCLRTLVGHTGGVWSSQMR-DNIIISGSTDRTLKVWNAETGEC---- 191 (445)
T ss_dssp EEEEETTEEEEEETTSCEEEEE-------TTTCCEEEECCCCSSCEEEEEEE-TTEEEEEETTSCEEEEETTTTEE----
T ss_pred EEEEcCCEEEEEECCCcEEEEE-------CCCCcEEEEEcCCCCCEEEEEec-CCEEEEEeCCCeEEEEECCcCcE----
Confidence 3556788888766 66674 34667788899999999999997 56899999999999999987764
Q ss_pred eeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEE
Q psy2113 90 IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVF 169 (183)
Q Consensus 90 ~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iw 169 (183)
...+.+|...|.++.+++ ..+++|+.||.|++||+++++. ...+.+|...|.+++| ++.++++++.||.|++|
T Consensus 192 --~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~iw 264 (445)
T 2ovr_B 192 --IHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQC-LHVLMGHVAAVRCVQY-DGRRVVSGAYDFMVKVW 264 (445)
T ss_dssp --EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCE-EEEEECCSSCEEEEEE-CSSCEEEEETTSCEEEE
T ss_pred --EEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcE-EEEEcCCcccEEEEEE-CCCEEEEEcCCCEEEEE
Confidence 667888999999999964 5799999999999999998876 7788899999999999 55789999999999999
Q ss_pred EecCCC
Q psy2113 170 KTKHQP 175 (183)
Q Consensus 170 d~~~~~ 175 (183)
|+++++
T Consensus 265 d~~~~~ 270 (445)
T 2ovr_B 265 DPETET 270 (445)
T ss_dssp EGGGTE
T ss_pred ECCCCc
Confidence 988764
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=128.06 Aligned_cols=154 Identities=23% Similarity=0.366 Sum_probs=123.5
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~ 83 (183)
-.+.+++|+|++..++++. +.+|++. .....+.+..+.+|...|.++.| .++.+++++.|+.+++|| ..
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d--~~ 132 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLF----ATSGEDPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK--EG 132 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETT----CCTTSCC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--TT
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEee----ecCCCCcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--CC
Confidence 4567889999999998876 4555443 22344566788899999999999 456799999999999999 22
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc-CCCcEEEEEecCCcEEEEecC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG-HEDKVMCVNWSDYRYIMSGGQ 162 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~l~~~~~ 162 (183)
.. ...+..|...+.++.+.|.++..+++++.||.|++||... . ...+.. |...+.+++|+++..+++++.
T Consensus 133 ~~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 203 (313)
T 3odt_A 133 SL------VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK--V-IKTFSGIHNDVVRHLAVVDDGHFISCSN 203 (313)
T ss_dssp EE------EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE--E-EEEECSSCSSCEEEEEEEETTEEEEEET
T ss_pred cE------EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc--e-EEEEeccCcccEEEEEEcCCCeEEEccC
Confidence 22 5567889999999999886788999999999999999432 2 455555 899999999998766999999
Q ss_pred CCcEEEEEecCCCCC
Q psy2113 163 DNSVRVFKTKHQPKS 177 (183)
Q Consensus 163 dg~i~iwd~~~~~~~ 177 (183)
||.|++||+++++..
T Consensus 204 dg~i~i~d~~~~~~~ 218 (313)
T 3odt_A 204 DGLIKLVDMHTGDVL 218 (313)
T ss_dssp TSEEEEEETTTCCEE
T ss_pred CCeEEEEECCchhhh
Confidence 999999999876543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-20 Score=131.45 Aligned_cols=164 Identities=14% Similarity=0.145 Sum_probs=123.5
Q ss_pred eeceeEEEEEeecCcEEEEEE----eccCCCCcccccc--cCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEE
Q psy2113 6 FGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLI--LQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWD 79 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd 79 (183)
....+.+++|+| +..++++. +.+|++....... ...+++..+. |...|.+++|++++ +++++.++.|++||
T Consensus 100 ~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~-l~~~~~d~~i~i~d 176 (342)
T 1yfq_A 100 ANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR-LIVGMNNSQVQWFR 176 (342)
T ss_dssp CCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE-EEEEESTTEEEEEE
T ss_pred CCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc-EEEEeCCCeEEEEE
Confidence 344567889999 87777765 6667653210000 0033333444 88899999999877 99999999999999
Q ss_pred cCC-CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC-----CcceEEeccCCC---------
Q psy2113 80 AEL-GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP-----KVPLFDMLGHED--------- 144 (183)
Q Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~-----~~~~~~~~~~~~--------- 144 (183)
++. ..... ......|...+.+++|+|.++.++++++.||.|++||++.. ......+..|..
T Consensus 177 ~~~~~~~~~----~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (342)
T 1yfq_A 177 LPLCEDDNG----TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252 (342)
T ss_dssp SSCCTTCCC----EEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCC
T ss_pred CCccccccc----eeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccce
Confidence 987 43211 33445688899999999833579999999999999999876 234777777765
Q ss_pred cEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 145 KVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 145 ~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.|.+++|+|+ .+|++++.||.|++||+++++.
T Consensus 253 ~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~ 285 (342)
T 1yfq_A 253 PVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKK 285 (342)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTTTEE
T ss_pred eEEEEEEcCCCCEEEEecCCceEEEEcCccHhH
Confidence 9999999975 8899999999999999987654
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.9e-19 Score=132.89 Aligned_cols=149 Identities=22% Similarity=0.402 Sum_probs=122.3
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~ 85 (183)
+.+++| ++..++++. +.+|+ ....+.+..+.+|.+.|.+++|++ +.+++|+.|+.|++||+++...
T Consensus 176 v~~l~~--~~~~l~sg~~dg~i~vwd-------~~~~~~~~~~~~h~~~v~~l~~~~-~~l~s~s~dg~i~vwd~~~~~~ 245 (435)
T 1p22_A 176 VLCLQY--DERVIITGSSDSTVRVWD-------VNTGEMLNTLIHHCEAVLHLRFNN-GMMVTCSKDRSIAVWDMASPTD 245 (435)
T ss_dssp EEEEEC--CSSEEEEEETTSCEEEEE-------SSSCCEEEEECCCCSCEEEEECCT-TEEEEEETTSCEEEEECSSSSC
T ss_pred EEEEEE--CCCEEEEEcCCCeEEEEE-------CCCCcEEEEEcCCCCcEEEEEEcC-CEEEEeeCCCcEEEEeCCCCCC
Confidence 445555 677777765 66664 345677888999999999999974 5899999999999999987654
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCc
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNS 165 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~ 165 (183)
. .....+.+|...|.++++ +++++++|+.||.|++||+++++. +..+.+|...|.++.|+ +.++++|+.||.
T Consensus 246 ~---~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~v~~~~~~-~~~l~~g~~dg~ 317 (435)
T 1p22_A 246 I---TLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEF-VRTLNGHKRGIACLQYR-DRLVVSGSSDNT 317 (435)
T ss_dssp C---EEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEE-TTEEEEEETTSC
T ss_pred c---eeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcE-EEEEcCCCCcEEEEEeC-CCEEEEEeCCCe
Confidence 2 123567789999999999 456999999999999999999876 77888999999999995 479999999999
Q ss_pred EEEEEecCCCC
Q psy2113 166 VRVFKTKHQPK 176 (183)
Q Consensus 166 i~iwd~~~~~~ 176 (183)
|++||+++++.
T Consensus 318 i~iwd~~~~~~ 328 (435)
T 1p22_A 318 IRLWDIECGAC 328 (435)
T ss_dssp EEEEETTTCCE
T ss_pred EEEEECCCCCE
Confidence 99999987654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9.8e-20 Score=149.11 Aligned_cols=126 Identities=20% Similarity=0.384 Sum_probs=112.9
Q ss_pred cceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 43 TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
.....+.+|.+.|++++|+|++. +++|+.|+.|++||+.+++. ...+.+|...|.+++|+| ++.++++++.|
T Consensus 606 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~------~~~~~~h~~~v~~~~~s~-~~~~l~s~~~d 678 (1249)
T 3sfz_A 606 LSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK------LLDIKAHEDEVLCCAFSS-DDSYIATCSAD 678 (1249)
T ss_dssp CCSEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE------EEEECCCSSCEEEEEECT-TSSEEEEEETT
T ss_pred cceEEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE------EEEeccCCCCEEEEEEec-CCCEEEEEeCC
Confidence 34557789999999999998876 88999999999999988765 667889999999999999 88999999999
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC---cEEEEecCCCcEEEEEecCCCC
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY---RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+.|++||+.+++. +..+.+|...|.+++|+++ ..+++|+.||.|++||+++++.
T Consensus 679 ~~v~vwd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~ 735 (1249)
T 3sfz_A 679 KKVKIWDSATGKL-VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKEC 735 (1249)
T ss_dssp SEEEEEETTTCCE-EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSE
T ss_pred CeEEEEECCCCce-EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcch
Confidence 9999999999876 7888999999999999963 5899999999999999987653
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.3e-20 Score=131.99 Aligned_cols=125 Identities=15% Similarity=0.264 Sum_probs=101.6
Q ss_pred eEEEeccCCCeeEEEEccCCe-EEEEeCCCe-EEEEEcCCCCCccCceeEEEee-c-CCcceEEEEEecCCCCEEEEEeC
Q psy2113 45 LITLKGHKEAISAVQWTAVDE-IITSSWDHT-LKIWDAELGGMKKGAIVKSTFS-S-HKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
+..+.+|.+.|.+++|+|++. |++|+.|++ |++||+++++. ...+. + |...|.+++|+| ++.+|++++.
T Consensus 188 ~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~------~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~ 260 (355)
T 3vu4_A 188 GVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL------VREFRRGLDRADVVDMKWST-DGSKLAVVSD 260 (355)
T ss_dssp CEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE------EEEEECTTCCSCEEEEEECT-TSCEEEEEET
T ss_pred cEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE------EEEEEcCCCCCcEEEEEECC-CCCEEEEEEC
Confidence 678899999999999999876 899999998 99999998765 55666 5 999999999999 8999999999
Q ss_pred CCeEEEEeCCCCCcc-eEEec---------------------cCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 121 DNSVKLWDLRSPKVP-LFDML---------------------GHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 121 dg~i~vwd~~~~~~~-~~~~~---------------------~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|+.|++||++..... ...+. ........++|+++ ..+++++.||.+++|++...+.
T Consensus 261 d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 261 KWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp TCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred CCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 999999999865320 11111 11223467899965 7999999999999999887554
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.8e-19 Score=126.70 Aligned_cols=159 Identities=8% Similarity=0.008 Sum_probs=108.2
Q ss_pred eeEEEEEeec----CcEEEEEE--eccCCCCcc---------------cccc-cCccceEEEeccCCCeeEEEEcc---C
Q psy2113 9 LTLGVIFMTV----GALLTLTN--IEVTSLPSF---------------FQLI-LQKTPLITLKGHKEAISAVQWTA---V 63 (183)
Q Consensus 9 ~~~~~~~~~~----~~~~~~~~--~~~~~~~~~---------------~~~~-~~~~~~~~~~~h~~~v~~~~~~~---~ 63 (183)
...+++|+|+ +..++.+. +.+|.++.. .... ..++.+..+.+|...++.++|++ +
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~ 192 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGM 192 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETS
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCC
Confidence 4457788888 77666544 333332211 0111 33556667778888888888886 3
Q ss_pred C-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCC---cceEEEEEecCCCCEE------------EEEeCCCeEEEE
Q psy2113 64 D-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK---EWVQSVRWSPIDPQLF------------VSASFDNSVKLW 127 (183)
Q Consensus 64 ~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~p~~~~~l------------~~~~~dg~i~vw 127 (183)
+ .|++++.|++|+|||+.+++. ...+.+|. ..+.+++|+| ++.++ ++|+.|++|++|
T Consensus 193 ~~~LaSgS~D~TIkIWDl~TGk~------l~tL~g~~~~v~~v~~vafSp-dG~~lvs~s~~~~~w~laSGs~D~tIklW 265 (356)
T 2w18_A 193 QEALLGTTIMNNIVIWNLKTGQL------LKKMHIDDSYQASVCHKAYSE-MGLLFIVLSHPCAKESESLRSPVFQLIVI 265 (356)
T ss_dssp TTEEEEEETTSEEEEEETTTCCE------EEEEECCC---CCCEEEEEEE-TTEEEEEEC------------CCEEEEEE
T ss_pred CceEEEecCCCcEEEEECCCCcE------EEEEcCCCcceeeeEEEEECC-CCCEEEEeccCCCcceeeccCCCcEEEEE
Confidence 3 388999999999999998876 56676543 3677889999 77765 668889999999
Q ss_pred eCCCCCcceEEe-----ccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 128 DLRSPKVPLFDM-----LGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 128 d~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|..+++. +..+ .+|.....+..++ +..+++++.|++|+|||+++++.
T Consensus 266 d~~tgk~-l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~ 317 (356)
T 2w18_A 266 NPKTTLS-VGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQC 317 (356)
T ss_dssp ETTTTEE-EEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSE
T ss_pred ECCCCEE-EEEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcE
Confidence 9998875 3332 3666665555554 57899999999999999998764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.3e-19 Score=130.77 Aligned_cols=147 Identities=24% Similarity=0.406 Sum_probs=121.4
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~ 84 (183)
.+.+++|+ +..++++. +.+|+ ....+.+..+.+|...|.++.|+ ++.+++|+.|+.|++||+++++
T Consensus 161 ~v~~~~~~--~~~l~s~~~dg~i~vwd-------~~~~~~~~~~~~h~~~v~~~~~~-~~~l~s~s~dg~i~~wd~~~~~ 230 (445)
T 2ovr_B 161 GVWSSQMR--DNIIISGSTDRTLKVWN-------AETGECIHTLYGHTSTVRCMHLH-EKRVVSGSRDATLRVWDIETGQ 230 (445)
T ss_dssp CEEEEEEE--TTEEEEEETTSCEEEEE-------TTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEESSSCC
T ss_pred CEEEEEec--CCEEEEEeCCCeEEEEE-------CCcCcEEEEECCCCCcEEEEEec-CCEEEEEeCCCEEEEEECCCCc
Confidence 34556665 45555554 66664 34567788899999999999995 4679999999999999998776
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDN 164 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg 164 (183)
. ...+.+|...|.++++ ++.++++|+.||.|++||+++++. +..+.+|...|.++.| ++.++++++.||
T Consensus 231 ~------~~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~v~~~~~-~~~~l~~~~~d~ 299 (445)
T 2ovr_B 231 C------LHVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETC-LHTLQGHTNRVYSLQF-DGIHVVSGSLDT 299 (445)
T ss_dssp E------EEEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEE-EEEECCCSSCEEEEEE-CSSEEEEEETTS
T ss_pred E------EEEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcE-eEEecCCCCceEEEEE-CCCEEEEEeCCC
Confidence 5 5677889999999998 467899999999999999998875 7788899999999999 568999999999
Q ss_pred cEEEEEecCCCC
Q psy2113 165 SVRVFKTKHQPK 176 (183)
Q Consensus 165 ~i~iwd~~~~~~ 176 (183)
.|++||+++++.
T Consensus 300 ~i~i~d~~~~~~ 311 (445)
T 2ovr_B 300 SIRVWDVETGNC 311 (445)
T ss_dssp CEEEEETTTCCE
T ss_pred eEEEEECCCCCE
Confidence 999999987754
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=132.61 Aligned_cols=163 Identities=11% Similarity=0.124 Sum_probs=108.1
Q ss_pred eceeEEEEEee--------cCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--eEEEEeCC
Q psy2113 7 GILTLGVIFMT--------VGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD--EIITSSWD 72 (183)
Q Consensus 7 ~~~~~~~~~~~--------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~~~d 72 (183)
.-.+.+++|+| ++.+++.+. +++|+ .....++..+..|...|.+++|+|++ .|++++.|
T Consensus 136 ~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd-------~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d 208 (393)
T 4gq1_A 136 HNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR-------LTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERN 208 (393)
T ss_dssp SSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE-------EETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETT
T ss_pred CCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE-------CCCCceeeeecCCCCCcEEEEECCCCCceEEecCCC
Confidence 34578899998 788888765 88884 34556667778899999999999875 48999999
Q ss_pred CeEEEEEcCCCCCccCc-------------------eeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC
Q psy2113 73 HTLKIWDAELGGMKKGA-------------------IVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK 133 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~-------------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~ 133 (183)
++|++||+++++..... .......+|...+.++.|++.++..+++++.|+.+++||+....
T Consensus 209 ~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~ 288 (393)
T 4gq1_A 209 GNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN 288 (393)
T ss_dssp SEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----
T ss_pred CEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC
Confidence 99999999876532110 01112346788899999984488999999999999999998765
Q ss_pred cceEEeccCCCcEEEEE------------------ecC--C-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 134 VPLFDMLGHEDKVMCVN------------------WSD--Y-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 134 ~~~~~~~~~~~~v~~~~------------------~~~--~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
. ...+..|...+..+. |.+ + .++++|+.||.|++||+.+++..
T Consensus 289 ~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 289 D-YNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp ----------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred C-CceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 4 334444444333332 332 2 46778899999999999887654
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=134.25 Aligned_cols=158 Identities=12% Similarity=0.071 Sum_probs=114.0
Q ss_pred eeEEEEEeecCcEEEE--------EEeccCCCCcccccc----cCccceEEEeccCCCeeEEEEccC-C-eEEEEeCCCe
Q psy2113 9 LTLGVIFMTVGALLTL--------TNIEVTSLPSFFQLI----LQKTPLITLKGHKEAISAVQWTAV-D-EIITSSWDHT 74 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~-~-~l~s~~~d~~ 74 (183)
.+.+++|+|++..+++ +.+++|++....... .....+..+.+|...|.+++|+|+ + .|++++.|++
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~ 173 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS 173 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence 4788999999999984 227777654321000 111124556679999999999986 3 4889999999
Q ss_pred EEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccC-------CCcEE
Q psy2113 75 LKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGH-------EDKVM 147 (183)
Q Consensus 75 v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-------~~~v~ 147 (183)
|++||+++... .....+|...|.+++|+| ++.+|++|+.||.|++||++ +.. ...+..| ...|.
T Consensus 174 v~iwD~~~~~~------~~~~~~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~-~~~-~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 174 IAVLQVTETVK------VCATLPSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT-LQE-KKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp EEEEEESSSEE------EEEEECGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT-CCE-EEEECCCTTCCTTSCEEEE
T ss_pred EEEEEcCCCcc------eeeccCCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC-Ccc-cccccCCcccCCCCceeEE
Confidence 99999987632 334567889999999999 79999999999999999998 332 3333333 33899
Q ss_pred EEEecCCc-EEEE-ecCCC------cEEEEEecCCC
Q psy2113 148 CVNWSDYR-YIMS-GGQDN------SVRVFKTKHQP 175 (183)
Q Consensus 148 ~~~~~~~~-~l~~-~~~dg------~i~iwd~~~~~ 175 (183)
++.|+++. ++++ ...|| .+++|+++..+
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~ 280 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKE 280 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccCC
Confidence 99999664 4432 33343 38999998754
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=126.64 Aligned_cols=117 Identities=23% Similarity=0.501 Sum_probs=93.5
Q ss_pred CeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC
Q psy2113 54 AISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK 133 (183)
Q Consensus 54 ~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~ 133 (183)
.++.|+|++++.|++ +.|++|+|||+.+++... ...+.+|...|.+++|+| +++++++|+.||.|++||+++++
T Consensus 27 y~~~l~WS~~~~lAv-g~D~tV~iWd~~tg~~~~----~~~~~~~~~~V~~v~~~~-~~~~l~sgs~Dg~v~iw~~~~~~ 100 (318)
T 4ggc_A 27 YLNLVDWSSGNVLAV-ALDNSVYLWSASSGDILQ----LLQMEQPGEYISSVAWIK-EGNYLAVGTSSAEVQLWDVQQQK 100 (318)
T ss_dssp TCBCEEECTTSEEEE-EETTEEEEEETTTCCEEE----EEECCSTTCCEEEEEECT-TSSEEEEEETTSEEEEEETTTTE
T ss_pred cceEEEECCCCEEEE-EeCCEEEEEECCCCCEEE----EEEecCCCCeEEEEEECC-CCCEEEEEECCCcEEEeecCCce
Confidence 467899998886655 469999999999877521 223456888899999999 89999999999999999998765
Q ss_pred c----------------------------------------ceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEec
Q psy2113 134 V----------------------------------------PLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 134 ~----------------------------------------~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~ 172 (183)
. ....+.+|...+..+.+.+. .++++++.||.|++||++
T Consensus 101 ~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 180 (318)
T 4ggc_A 101 RLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180 (318)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESS
T ss_pred eEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECC
Confidence 3 12334567777888888854 899999999999999998
Q ss_pred CCCC
Q psy2113 173 HQPK 176 (183)
Q Consensus 173 ~~~~ 176 (183)
+++.
T Consensus 181 ~~~~ 184 (318)
T 4ggc_A 181 PGEG 184 (318)
T ss_dssp CBTT
T ss_pred CCcc
Confidence 7654
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-19 Score=128.09 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=90.6
Q ss_pred ceeEEEEEeecCcEEEEEEec--------cCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEE
Q psy2113 8 ILTLGVIFMTVGALLTLTNIE--------VTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW 78 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vw 78 (183)
....+++|+|++..++.+... .|.+.. ..........+.+|...|++++|+|++. |++|+.|++|+||
T Consensus 220 ~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~---~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iw 296 (365)
T 4h5i_A 220 WSLSKINFIADDTVLIAASLKKGKGIVLTKISIKS---GNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALV 296 (365)
T ss_dssp EEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEET---TEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEE
T ss_pred CCEEEEEEcCCCCEEEEEecCCcceeEEeeccccc---ceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEE
Confidence 456789999999998876532 222111 1112223456788999999999999887 8899999999999
Q ss_pred EcCCCCCccCceeEEE-eecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q psy2113 79 DAELGGMKKGAIVKST-FSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP 132 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~ 132 (183)
|+++.+. ... +.+|...|++++|+| ++++|++|+.|++|+|||+...
T Consensus 297 d~~~~~~------~~~~~~gH~~~V~~v~fSp-dg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 297 KLKDLSM------SKIFKQAHSFAITEVTISP-DSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp ETTTTEE------EEEETTSSSSCEEEEEECT-TSCEEEEEETTSEEEEEECCTT
T ss_pred ECCCCcE------EEEecCcccCCEEEEEECC-CCCEEEEEeCCCeEEEEEcCCC
Confidence 9988764 444 478999999999999 8999999999999999999754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=114.94 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=111.1
Q ss_pred eEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-E-EEEeCCCeEEEEEcCC
Q psy2113 10 TLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-I-ITSSWDHTLKIWDAEL 82 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~~ 82 (183)
..+++|+|++..+.+.. +.+|+ ....+.+..+..+. .+.+++|+|++. + ++++.++.|++||+.+
T Consensus 34 ~~~~~~s~dg~~l~~~~~~d~~i~v~d-------~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~ 105 (391)
T 1l0q_A 34 PMGAVISPDGTKVYVANAHSNDVSIID-------TATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTS 105 (391)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEE-------TTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEECCCCCEEEEECCCCCeEEEEE-------CCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCC
Confidence 57889999998775433 55553 34556666666555 899999998876 5 4555779999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEE-EEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE-EE
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF-VSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI-MS 159 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l-~~ 159 (183)
++. ...+. +...+.+++|+| +++.+ ++++.|+.|++||+++++. ...+..+ ..+..++|+++ ..+ ++
T Consensus 106 ~~~------~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~-~~~~~~~~~~dg~~l~~~ 175 (391)
T 1l0q_A 106 NTV------AGTVK-TGKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAV-INTVSVG-RSPKGIAVTPDGTKVYVA 175 (391)
T ss_dssp TEE------EEEEE-CSSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEE-EEEEECC-SSEEEEEECTTSSEEEEE
T ss_pred CeE------EEEEe-CCCCcceEEECC-CCCEEEEEeCCCCEEEEEECCCCcE-EEEEecC-CCcceEEECCCCCEEEEE
Confidence 654 33444 445789999999 66655 7888899999999998775 5555544 46799999966 555 67
Q ss_pred ecCCCcEEEEEecCCC
Q psy2113 160 GGQDNSVRVFKTKHQP 175 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~ 175 (183)
++.|+.|++||+++++
T Consensus 176 ~~~~~~v~~~d~~~~~ 191 (391)
T 1l0q_A 176 NFDSMSISVIDTVTNS 191 (391)
T ss_dssp ETTTTEEEEEETTTTE
T ss_pred eCCCCEEEEEECCCCe
Confidence 8889999999998764
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.5e-17 Score=119.76 Aligned_cols=149 Identities=10% Similarity=0.118 Sum_probs=112.6
Q ss_pred EEEEEeecCcEEEEEE----eccCCCCcccccccCccceE-----EEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc
Q psy2113 11 LGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLI-----TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~ 80 (183)
.+++|+|++.+++++. +.+|++ ...+.+. .+.+|.+.|.+++|++++. +++++.|+.|++||+
T Consensus 126 ~~~~~s~~~~~~~~~~~~~~i~~~d~-------~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~ 198 (433)
T 3bws_A 126 KSVRFIDNTRLAIPLLEDEGMDVLDI-------NSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDL 198 (433)
T ss_dssp CCCEESSSSEEEEEBTTSSSEEEEET-------TTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEET
T ss_pred eEEEEeCCCeEEEEeCCCCeEEEEEC-------CCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEEC
Confidence 4678999666666543 555543 2333333 3457888999999998877 778889999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEecCCCCEE-EEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEE
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF-VSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIM 158 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~ 158 (183)
++.+. ...+..|...+.+++|+| ++..+ ++++.|+.|++||+++++. ...+.. ...+.+++|+|+ ..++
T Consensus 199 ~~~~~------~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~ 269 (433)
T 3bws_A 199 KTLAY------KATVDLTGKWSKILLYDP-IRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELY 269 (433)
T ss_dssp TTCCE------EEEEECSSSSEEEEEEET-TTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEE
T ss_pred CCceE------EEEEcCCCCCeeEEEEcC-CCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEE
Confidence 87664 556678889999999999 66655 5666899999999998764 444444 456899999966 6888
Q ss_pred Eec--------CCCcEEEEEecCCC
Q psy2113 159 SGG--------QDNSVRVFKTKHQP 175 (183)
Q Consensus 159 ~~~--------~dg~i~iwd~~~~~ 175 (183)
+++ .||.|++||+++++
T Consensus 270 ~~~~~~~~~~~~dg~i~~~d~~~~~ 294 (433)
T 3bws_A 270 IAQFSASNQESGGGRLGIYSMDKEK 294 (433)
T ss_dssp EEEEESCTTCSCCEEEEEEETTTTE
T ss_pred EEECCCCccccCCCeEEEEECCCCc
Confidence 777 58899999998764
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=9.6e-16 Score=111.28 Aligned_cols=149 Identities=14% Similarity=0.131 Sum_probs=111.6
Q ss_pred eeEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-E-EEEeCCCeEEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-I-ITSSWDHTLKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~ 81 (183)
...+++|+|++..+.+.. +.+| +....+.+..+..+ ..+.+++|+|++. + ++++.++.|++||++
T Consensus 117 ~~~~~~~s~dg~~l~~~~~~~~~v~~~-------d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~ 188 (391)
T 1l0q_A 117 SPLGLALSPDGKKLYVTNNGDKTVSVI-------NTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTV 188 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEE-------ETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEE-------ECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence 457889999999775433 4444 33445566666655 4568999998875 4 577889999999998
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe---CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS---FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
+.+. ...+ .+...+.+++|+| +++++++++ .++.|++||+++++. ...+..+. .+.+++|+|+ +++
T Consensus 189 ~~~~------~~~~-~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~~~~s~dg~~l 258 (391)
T 1l0q_A 189 TNSV------IDTV-KVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKI-TARIPVGP-DPAGIAVTPDGKKV 258 (391)
T ss_dssp TTEE------EEEE-ECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEE-EEEEECCS-SEEEEEECTTSSEE
T ss_pred CCeE------EEEE-ecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeE-EEEEecCC-CccEEEEccCCCEE
Confidence 7653 3333 3566889999999 777777776 689999999998765 55565554 5789999975 555
Q ss_pred -EEecCCCcEEEEEecCCC
Q psy2113 158 -MSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 158 -~~~~~dg~i~iwd~~~~~ 175 (183)
++++.|+.|++||+++++
T Consensus 259 ~~s~~~d~~v~v~d~~~~~ 277 (391)
T 1l0q_A 259 YVALSFXNTVSVIDTATNT 277 (391)
T ss_dssp EEEETTTTEEEEEETTTTE
T ss_pred EEEcCCCCEEEEEECCCCc
Confidence 677899999999998754
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.9e-15 Score=111.08 Aligned_cols=157 Identities=10% Similarity=0.049 Sum_probs=113.1
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EE-EEeCCC--eEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-II-TSSWDH--TLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~--~v~vwd~~~~~ 84 (183)
...+++|+|+|..++..............+...++. ..+..|.+.+.+++|+|++. |+ +++.++ .|++||+.+++
T Consensus 180 ~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~ 258 (415)
T 2hqs_A 180 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ 258 (415)
T ss_dssp CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC
T ss_pred cceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCC
Confidence 567889999999888765321111111113333333 45677888999999999987 55 566555 49999998765
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
...+..|...+.+++|+| +++.|+.++. ++ .|++||+.+++ ...+..+...+..++|+|+ ++|+.+
T Consensus 259 -------~~~l~~~~~~~~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdG~~l~~~ 328 (415)
T 2hqs_A 259 -------IRQVTDGRSNNTEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMV 328 (415)
T ss_dssp -------EEECCCCSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEE
T ss_pred -------EEeCcCCCCcccceEECC-CCCEEEEEECCCCCcEEEEEECCCCC--EEEEecCCCcccCeEECCCCCEEEEE
Confidence 345667888999999999 7888887775 44 78888998876 3455667778999999976 777777
Q ss_pred cCC---CcEEEEEecCCCC
Q psy2113 161 GQD---NSVRVFKTKHQPK 176 (183)
Q Consensus 161 ~~d---g~i~iwd~~~~~~ 176 (183)
+.+ ..|.+||+.+++.
T Consensus 329 ~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp EECSSCEEEEEEETTTCCE
T ss_pred ECcCCceEEEEEECCCCCE
Confidence 654 5899999987653
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.3e-16 Score=113.31 Aligned_cols=150 Identities=9% Similarity=0.056 Sum_probs=115.2
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-E-EEEeCCCeEEEEEcCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-I-ITSSWDHTLKIWDAEL 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~~ 82 (183)
.+.+++|++++.+++.+. +.+|+ ....+.+..+..|...+.+++|+|++. + ++++.++.|++||+++
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFD-------LKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT 243 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEE-------TTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEE-------CCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC
Confidence 456788999998887764 55564 345566778888999999999998875 4 4556899999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe--------CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS--------FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY 154 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~--------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 154 (183)
++. ...+. +...+.+++|+| ++..+++++ .|+.|++||+++++. .....+...+..++|+|+
T Consensus 244 ~~~------~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~ 313 (433)
T 3bws_A 244 KLE------IRKTD-KIGLPRGLLLSK-DGKELYIAQFSASNQESGGGRLGIYSMDKEKL--IDTIGPPGNKRHIVSGNT 313 (433)
T ss_dssp TEE------EEECC-CCSEEEEEEECT-TSSEEEEEEEESCTTCSCCEEEEEEETTTTEE--EEEEEEEECEEEEEECSS
T ss_pred CcE------EEEec-CCCCceEEEEcC-CCCEEEEEECCCCccccCCCeEEEEECCCCcE--EeeccCCCCcceEEECCC
Confidence 653 33443 345699999999 787888877 488999999998764 333456668899999965
Q ss_pred -c-EEEEecCCCcEEEEEecCCC
Q psy2113 155 -R-YIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 155 -~-~l~~~~~dg~i~iwd~~~~~ 175 (183)
+ .+++++.|+.|++||+++++
T Consensus 314 g~~l~~~~~~~~~v~v~d~~~~~ 336 (433)
T 3bws_A 314 ENKIYVSDMCCSKIEVYDLKEKK 336 (433)
T ss_dssp TTEEEEEETTTTEEEEEETTTTE
T ss_pred CCEEEEEecCCCEEEEEECCCCc
Confidence 3 55777999999999998654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-14 Score=106.16 Aligned_cols=155 Identities=11% Similarity=0.048 Sum_probs=108.6
Q ss_pred ceeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeC-CC--eEEEEEcCCC
Q psy2113 8 ILTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSW-DH--TLKIWDAELG 83 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~-d~--~v~vwd~~~~ 83 (183)
....+++|+|+|..++...-.-........+.... ....+..|...+.+++|+|++. |+.++. ++ .|++||+.++
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~-~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~ 301 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGG 301 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCC-CEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCC
Confidence 34678899999998774331101100111122223 3356778888999999999987 666665 44 6777888765
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC---CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEE
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD---NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~ 159 (183)
+. ..+..+...+.+++|+| ++++|+.++.+ ..|++||+.+++. ..+..+. .+.+++|+|+ ..|+.
T Consensus 302 ~~-------~~l~~~~~~~~~~~~sp-dG~~l~~~~~~~g~~~i~~~d~~~~~~--~~l~~~~-~~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 302 AP-------QRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSSTF-LDETPSLAPNGTMVIY 370 (415)
T ss_dssp CC-------EECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCCE--EECCCSS-SCEEEEECTTSSEEEE
T ss_pred CE-------EEEecCCCcccCeEECC-CCCEEEEEECcCCceEEEEEECCCCCE--EEecCCC-CcCCeEEcCCCCEEEE
Confidence 52 23455677889999999 78888877764 5899999998764 4455554 8899999976 77888
Q ss_pred ecCCC---cEEEEEecCC
Q psy2113 160 GGQDN---SVRVFKTKHQ 174 (183)
Q Consensus 160 ~~~dg---~i~iwd~~~~ 174 (183)
++.++ .|.+||+...
T Consensus 371 ~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 371 SSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp EEEETTEEEEEEEETTSC
T ss_pred EEcCCCccEEEEEECCCC
Confidence 77776 7999998744
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.7e-14 Score=96.46 Aligned_cols=160 Identities=10% Similarity=0.078 Sum_probs=107.9
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EE-EEeCCCeEEEEEcCCCCCcc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-II-TSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~-s~~~d~~v~vwd~~~~~~~~ 87 (183)
..+++|+|++..++............+.-.........+..+ ..+..++|+|++. ++ +++.++.+++|++......
T Consensus 87 ~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~- 164 (297)
T 2ojh_A 87 NNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV- 164 (297)
T ss_dssp CSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-
T ss_pred ccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-
Confidence 456789999998887662111111111111112223444433 3488999999876 54 7788999999997532211
Q ss_pred CceeEEEeecCCcceEEEEEecCCCCEEEEEe-CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCC--
Q psy2113 88 GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS-FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQD-- 163 (183)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d-- 163 (183)
...+..+...+.+++|+| +++.++.++ .++.+.+|++.........+..+...+..++|+|+ .+|+.++.+
T Consensus 165 ----~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 239 (297)
T 2ojh_A 165 ----ETRLTHGEGRNDGPDYSP-DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDAD 239 (297)
T ss_dssp ----EEECCCSSSCEEEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETT
T ss_pred ----ceEcccCCCccccceECC-CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCC
Confidence 345666788899999999 777666555 58899999886333336677778888999999966 777777765
Q ss_pred ---------CcEEEEEecCCCC
Q psy2113 164 ---------NSVRVFKTKHQPK 176 (183)
Q Consensus 164 ---------g~i~iwd~~~~~~ 176 (183)
+.|.+||+.+++.
T Consensus 240 ~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 240 VFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CCSCCSSEEEEEEEEETTSCSC
T ss_pred CCcccccCceEEEEEecCCCCc
Confidence 5699999987653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.57 E-value=3.4e-13 Score=93.67 Aligned_cols=150 Identities=13% Similarity=0.085 Sum_probs=101.8
Q ss_pred ceeEEEEEeecCcEEEEEE---eccCCCCcccccccC-ccceEEEecc-CCCeeEEEEccCCe-EEEEe--CCCeEEEEE
Q psy2113 8 ILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQ-KTPLITLKGH-KEAISAVQWTAVDE-IITSS--WDHTLKIWD 79 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~h-~~~v~~~~~~~~~~-l~s~~--~d~~v~vwd 79 (183)
....+++|+|++..++... +.+|+ ... .+.......+ ...+.+++|+|++. +++++ .++...||.
T Consensus 42 ~~v~~~~~spdg~~l~~~~~~~i~~~d-------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~ 114 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNSEGLLYRLS-------LAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL 114 (297)
T ss_dssp SCCEEEEECTTSSEEEEEETTEEEEEE-------SSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred cceEeeEECCCCCEEEEEcCCeEEEEe-------CCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence 3467889999999888765 44443 233 3444444455 36789999999876 66666 334555555
Q ss_pred c--CCCCCccCceeEEEeecCCcceEEEEEecCCCCEEE-EEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-c
Q psy2113 80 A--ELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFV-SASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-R 155 (183)
Q Consensus 80 ~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 155 (183)
+ .... ...+..+ ..+..++|+| +++.++ ++..++.+.+|+++........+..+...+.+++|+|+ .
T Consensus 115 ~~~~~~~-------~~~~~~~-~~~~~~~~sp-dg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~ 185 (297)
T 2ojh_A 115 LPSTGGT-------PRLMTKN-LPSYWHGWSP-DGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGR 185 (297)
T ss_dssp EETTCCC-------CEECCSS-SSEEEEEECT-TSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSS
T ss_pred EECCCCc-------eEEeecC-CCccceEECC-CCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCC
Confidence 4 4333 2233333 3488999999 676655 78889999999865332225667778889999999976 6
Q ss_pred EEEEec-CCCcEEEEEecC
Q psy2113 156 YIMSGG-QDNSVRVFKTKH 173 (183)
Q Consensus 156 ~l~~~~-~dg~i~iwd~~~ 173 (183)
.++.++ .++.+++|++..
T Consensus 186 ~l~~~~~~~~~~~i~~~~~ 204 (297)
T 2ojh_A 186 WIYFNSSRTGQMQIWRVRV 204 (297)
T ss_dssp EEEEEECTTSSCEEEEEET
T ss_pred EEEEEecCCCCccEEEECC
Confidence 666554 699999999873
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=5.2e-13 Score=101.37 Aligned_cols=155 Identities=20% Similarity=0.247 Sum_probs=112.1
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEcc----CCe-EEEEe-CCCeEEEEE
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA----VDE-IITSS-WDHTLKIWD 79 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~-l~s~~-~d~~v~vwd 79 (183)
..+++|+|+|+.+.+.+ +.+|++ ...+.+.+.++. +......++|+| +++ +++++ .+++|.+||
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~-----~~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D 254 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDL-----WAKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD 254 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEET-----TSSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEEC-----cCCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEe
Confidence 56889999999998877 444432 113456667776 455679999999 876 66665 589999999
Q ss_pred cCCCCCccCceeEEEeec----------C-CcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEE
Q psy2113 80 AELGGMKKGAIVKSTFSS----------H-KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMC 148 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~----------~-~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 148 (183)
..+.+. ...+.. | ...+..+.++|++..++++...++.|.+||..+.+........+...+..
T Consensus 255 ~~t~~~------~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~ 328 (543)
T 1nir_A 255 GETLEP------KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHD 328 (543)
T ss_dssp TTTCCE------EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCC
T ss_pred cccccc------ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccC
Confidence 987665 333332 2 23689999999666778888889999999998876533223345667889
Q ss_pred EEecCC-cEEE-EecCCCcEEEEEecCCCC
Q psy2113 149 VNWSDY-RYIM-SGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 149 ~~~~~~-~~l~-~~~~dg~i~iwd~~~~~~ 176 (183)
+.|+|+ ++++ ++..+++|.+||+.+++.
T Consensus 329 ~~~spdg~~l~va~~~~~~v~v~D~~tg~l 358 (543)
T 1nir_A 329 GGWDSSHRYFMTAANNSNKVAVIDSKDRRL 358 (543)
T ss_dssp EEECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred ceECCCCCEEEEEecCCCeEEEEECCCCeE
Confidence 999976 6555 556689999999987653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.2e-14 Score=111.80 Aligned_cols=145 Identities=10% Similarity=0.066 Sum_probs=99.8
Q ss_pred ceeceeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCC---CeeEEEEccCCe-EEEEeCC-----
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKE---AISAVQWTAVDE-IITSSWD----- 72 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~-l~s~~~d----- 72 (183)
++.....+++|+|+|.+++... +.+| +...++....+..|.. .|.+++|+|+++ |++++.+
T Consensus 14 ~~~~~~~~~~~spdg~~~~~~~dg~i~~~-------d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~ 86 (723)
T 1xfd_A 14 DFKIHDPEAKWISDTEFIYREQKGTVRLW-------NVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQ 86 (723)
T ss_dssp TTCCCCCCCCBSSSSCBCCCCSSSCEEEB-------CGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSS
T ss_pred CCcccccccEEcCCCcEEEEeCCCCEEEE-------ECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCcccee
Confidence 3444567889999999765521 4444 3345555566666665 499999999987 6777654
Q ss_pred ----CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCc---
Q psy2113 73 ----HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK--- 145 (183)
Q Consensus 73 ----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--- 145 (183)
+.+++||+.+++... +.....|...+..++|+| +++.|+.++. +.|++||+.+++. ......+...
T Consensus 87 ~~~~~~i~~~d~~~~~~~~----l~~~~~~~~~~~~~~~SP-dG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 87 HSYTGYYVLSKIPHGDPQS----LDPPEVSNAKLQYAGWGP-KGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIY 159 (723)
T ss_dssp SCCCSEEEEEESSSCCCEE----CCCTTCCSCCCSBCCBCS-STTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEE
T ss_pred ecceeeEEEEECCCCceEe----ccCCccccccccccEECC-CCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceE
Confidence 788899998766310 111223445588999999 8888888875 8999999998765 4444443332
Q ss_pred ---------------EEEEEecCC-cEEEEecCC
Q psy2113 146 ---------------VMCVNWSDY-RYIMSGGQD 163 (183)
Q Consensus 146 ---------------v~~~~~~~~-~~l~~~~~d 163 (183)
+..++|+|+ +.|+.++.|
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~ 193 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIN 193 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEE
T ss_pred CcccceeEEEEeccCcceEEECCCCCEEEEEEEC
Confidence 378999976 788877654
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-12 Score=93.08 Aligned_cols=160 Identities=6% Similarity=-0.014 Sum_probs=109.5
Q ss_pred ceeEEEEEeecCcEEEEEEeccC----CCCcccccccCccceEEEeccCCCeeEEEEccCCe-E-EEEeCCCeEEEEEcC
Q psy2113 8 ILTLGVIFMTVGALLTLTNIEVT----SLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-I-ITSSWDHTLKIWDAE 81 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~ 81 (183)
....+++|+|++..+.+.....+ .-.....+....+.+..+.. ...+..++|+|++. + ++...++.|.+||..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 119 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDAK 119 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence 34567899999988776652211 00011113344555555553 34578899998875 4 455668999999998
Q ss_pred CCCCccCceeEEEeecCCc---------ceEEEEEecCCCCEEEEEe--CCCeEEEEeCCCCCcceEEeccCCCcEEEEE
Q psy2113 82 LGGMKKGAIVKSTFSSHKE---------WVQSVRWSPIDPQLFVSAS--FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN 150 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~---------~v~~~~~~p~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 150 (183)
+++. ...+..+.. .+.+++|+| +++.++.+. .++.|.+||.++++. ...+..+...+..++
T Consensus 120 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 120 TGEV------KGRLVLDDRKRTEEVRPLQPRELVADD-ATNTVYISGIGKESVIWVVDGGNIKL-KTAIQNTGKMSTGLA 191 (353)
T ss_dssp TCCE------EEEEESCCCCCCSSCCCCEEEEEEEET-TTTEEEEEEESSSCEEEEEETTTTEE-EEEECCCCTTCCCCE
T ss_pred CCee------EEEEecCCCccccccCCCCCceEEECC-CCCEEEEEecCCCceEEEEcCCCCce-EEEecCCCCccceEE
Confidence 7764 334443322 278899999 666655554 478999999998775 555554566688899
Q ss_pred ecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 151 WSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 151 ~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|+++ +.+++++.++.|.+||+.+++.
T Consensus 192 ~s~dg~~l~~~~~~~~i~~~d~~~~~~ 218 (353)
T 3vgz_A 192 LDSEGKRLYTTNADGELITIDTADNKI 218 (353)
T ss_dssp EETTTTEEEEECTTSEEEEEETTTTEE
T ss_pred ECCCCCEEEEEcCCCeEEEEECCCCeE
Confidence 9965 7888888999999999887653
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-12 Score=92.84 Aligned_cols=157 Identities=10% Similarity=0.013 Sum_probs=107.9
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCC---------eeEEEEccCCe-EEEEe--CCCeEEE
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEA---------ISAVQWTAVDE-IITSS--WDHTLKI 77 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------v~~~~~~~~~~-l~s~~--~d~~v~v 77 (183)
..+++|+|++..+.+.+..-..+ ...+....+.+..+..+... +.++.|+|++. ++.++ .++.|.+
T Consensus 91 ~~~~~~s~dg~~l~v~~~~~~~v--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~ 168 (353)
T 3vgz_A 91 PFGATINNTTQTLWFGNTVNSAV--TAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWV 168 (353)
T ss_dssp CCSEEEETTTTEEEEEETTTTEE--EEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEE
T ss_pred cceEEECCCCCEEEEEecCCCEE--EEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEE
Confidence 45788999998766654211111 11133455555666654432 68899998865 55444 5789999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc----CCCcEEEEEecC
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG----HEDKVMCVNWSD 153 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~~~v~~~~~~~ 153 (183)
||..+.+. ...+..+...+..++|+| +++.+++++.++.+.+||..+++. ...... +...+..++|+|
T Consensus 169 ~d~~~~~~------~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~s~ 240 (353)
T 3vgz_A 169 VDGGNIKL------KTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKI-LSRKKLLDDGKEHFFINISLDT 240 (353)
T ss_dssp EETTTTEE------EEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEE-EEEEECCCSSSCCCEEEEEEET
T ss_pred EcCCCCce------EEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeE-EEEEEcCCCCCCcccceEEECC
Confidence 99987654 444544556688999999 888888888899999999998875 433332 455688899996
Q ss_pred C-cEEEEe-cCCCcEEEEEecCCCC
Q psy2113 154 Y-RYIMSG-GQDNSVRVFKTKHQPK 176 (183)
Q Consensus 154 ~-~~l~~~-~~dg~i~iwd~~~~~~ 176 (183)
+ ++++.+ ..++.|.+||+.+++.
T Consensus 241 dg~~l~~~~~~~~~v~~~d~~~~~~ 265 (353)
T 3vgz_A 241 ARQRAFITDSKAAEVLVVDTRNGNI 265 (353)
T ss_dssp TTTEEEEEESSSSEEEEEETTTCCE
T ss_pred CCCEEEEEeCCCCEEEEEECCCCcE
Confidence 5 555554 4569999999987653
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4e-13 Score=108.92 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=113.7
Q ss_pred eEEEEEe-ecCcEEEEEE---eccCCCCcccccccCccceEEEeccCC-CeeEEEEccCCe-EEEEeCCCeEE-EEEcCC
Q psy2113 10 TLGVIFM-TVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKE-AISAVQWTAVDE-IITSSWDHTLK-IWDAEL 82 (183)
Q Consensus 10 ~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~-l~s~~~d~~v~-vwd~~~ 82 (183)
..+++|+ |+|..++... +.++.. ... ....+..|.. .+..+.|+ ++. ++.++.+..+. +||+..
T Consensus 298 v~~~~~S~pdG~~la~~~~~~i~~~~~-------~~~-~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 298 KFAEDFSPLDGDLIAFVSRGQAFIQDV-------SGT-YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp GGEEEEEECGGGCEEEEETTEEEEECT-------TSS-BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred cceeeecCCCCCEEEEEEcCEEEEEcC-------CCC-ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence 5678999 9999877765 222322 122 2344667777 89999999 876 77777788888 889876
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
.. ...+.+|...+..++|+| +++.+++++.++.|++||+.+++. ......|...+..++|+|+ ++|++++
T Consensus 369 ~~-------~~~l~~~~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~-~~~~~~~~~~v~~~~~SpDG~~la~~~ 439 (1045)
T 1k32_A 369 GK-------AEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGF 439 (1045)
T ss_dssp CC-------EEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEE
T ss_pred CC-------ceEecCCccceeeeEECC-CCCEEEEECCCCeEEEEECCCCce-EEeccCCCCCccceEECCCCCeEEEEe
Confidence 54 234447778899999999 899999999999999999998875 5555588889999999976 7787776
Q ss_pred CCC----------cEEEEEecCCC
Q psy2113 162 QDN----------SVRVFKTKHQP 175 (183)
Q Consensus 162 ~dg----------~i~iwd~~~~~ 175 (183)
.++ .|++||+.+++
T Consensus 440 ~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 440 PLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EECSSTTCSCCEEEEEEEETTTTE
T ss_pred cCccccccCCCCCeEEEEECCCCc
Confidence 644 89999998754
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-13 Score=105.92 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=97.6
Q ss_pred eeEEEEEeecCcEEEEEEeccC---CCCcccccccCccceEEEeccCC------------------------CeeEEEEc
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVT---SLPSFFQLILQKTPLITLKGHKE------------------------AISAVQWT 61 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~------------------------~v~~~~~~ 61 (183)
...+++|+|+|..++.....-. .......+...++....+..+.. .|.+++|+
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S 117 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS 117 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence 4678899999998887553100 00011113334444444444433 37899999
Q ss_pred cCCe-EEEEeCCCeEEEEEcCCCC--CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEE
Q psy2113 62 AVDE-IITSSWDHTLKIWDAELGG--MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFD 138 (183)
Q Consensus 62 ~~~~-l~s~~~d~~v~vwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 138 (183)
|+++ |++++. +.|++||+.++. . ...+..+...+..++|+| +++.|+.++ ++.|++||+.+++. ...
T Consensus 118 pDg~~l~~~~~-~~i~~~d~~~~~~~~------~~~l~~~~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~-~~~ 187 (741)
T 2ecf_A 118 PDAQRLLFPLG-GELYLYDLKQEGKAA------VRQLTHGEGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQ-MQL 187 (741)
T ss_dssp TTSSEEEEEET-TEEEEEESSSCSTTS------CCBCCCSSSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEE-EEC
T ss_pred CCCCEEEEEeC-CcEEEEECCCCCcce------EEEcccCCcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCE-EEe
Confidence 9987 555554 999999998762 1 234566778899999999 888888887 56999999988753 322
Q ss_pred eccCCCc----------------EEEEEecCC-cEEEEecCCC
Q psy2113 139 MLGHEDK----------------VMCVNWSDY-RYIMSGGQDN 164 (183)
Q Consensus 139 ~~~~~~~----------------v~~~~~~~~-~~l~~~~~dg 164 (183)
...+... +..+.|+|+ ++|+.++.|+
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~ 230 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE 230 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence 2333322 477999976 7788877665
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-12 Score=88.62 Aligned_cols=155 Identities=12% Similarity=0.161 Sum_probs=101.9
Q ss_pred EEEEeecCcEEEEEEeccCCCCcccccccCccc-eEEEeccCCCeeEEEEccCCe-EEEEeCC-C--eEEEEEcCCCCCc
Q psy2113 12 GVIFMTVGALLTLTNIEVTSLPSFFQLILQKTP-LITLKGHKEAISAVQWTAVDE-IITSSWD-H--TLKIWDAELGGMK 86 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~-l~s~~~d-~--~v~vwd~~~~~~~ 86 (183)
+++|+|++..+.+.......+. ..+....+. ...+..+..+..+++|+|++. ++++..+ + .|.+||+.+++.
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~--~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~- 120 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLV--QIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF- 120 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEE--EEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-
T ss_pred eEEEcCCCCEEEEEeCCCCeEE--EEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-
Confidence 8899999997666552111111 112334444 566666777766699999887 5544334 2 899999987654
Q ss_pred cCceeEEEeecCCcceEEEEEecCCCC-EEEEEeCCCe-EEEEeCCCCCcce---EEeccCCCcEEEEEecCC-cE-EEE
Q psy2113 87 KGAIVKSTFSSHKEWVQSVRWSPIDPQ-LFVSASFDNS-VKLWDLRSPKVPL---FDMLGHEDKVMCVNWSDY-RY-IMS 159 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~-i~vwd~~~~~~~~---~~~~~~~~~v~~~~~~~~-~~-l~~ 159 (183)
...+. ......+++|+| +++ ++++...++. +.+|++....... .........+..++|+|+ ++ +++
T Consensus 121 -----~~~~~-~~~~~~~~~~sp-dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~ 193 (331)
T 3u4y_A 121 -----ISTIP-IPYDAVGIAISP-NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA 193 (331)
T ss_dssp -----EEEEE-CCTTEEEEEECT-TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE
T ss_pred -----EEEEE-CCCCccceEECC-CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE
Confidence 33343 344578999999 665 5555566678 9999998644311 122234456899999976 54 455
Q ss_pred ecCCCcEEEEEecCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~ 176 (183)
+..++.|++||+++++.
T Consensus 194 ~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 194 NLIGNSIGILETQNPEN 210 (331)
T ss_dssp ETTTTEEEEEECSSTTS
T ss_pred eCCCCeEEEEECCCCcc
Confidence 66789999999987665
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=105.60 Aligned_cols=150 Identities=13% Similarity=0.197 Sum_probs=104.3
Q ss_pred eeEEEEEeecCcEEEEEE--eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCC----
Q psy2113 9 LTLGVIFMTVGALLTLTN--IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAEL---- 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~---- 82 (183)
...+++|+|++.++...+ +.+|++ ...+ ...+..+...+.+++|+|++..++.+.++.|++||+.+
T Consensus 83 ~v~~~~~spd~~~~~~~~~~i~~~d~-------~~~~-~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQGGLVGFDM-------LARK-VTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEG 154 (706)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEET-------TTTE-EEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSC
T ss_pred CceeEEECCCCeEEEEECCEEEEEEC-------CCCc-eEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCccccc
Confidence 367889999954444433 444432 2332 34455677789999999998744446789999999987
Q ss_pred -CCCccCceeEEEeecCCcc--------------eEEEEEecCCCCEEEEEe----------------------------
Q psy2113 83 -GGMKKGAIVKSTFSSHKEW--------------VQSVRWSPIDPQLFVSAS---------------------------- 119 (183)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~--------------v~~~~~~p~~~~~l~~~~---------------------------- 119 (183)
++. ......+... +.+++|+| +++.|++++
T Consensus 155 ~g~~------~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~ 227 (706)
T 2z3z_A 155 MSRA------IAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPM 227 (706)
T ss_dssp CCCC------EESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCB
T ss_pred CCCc------EEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCC
Confidence 543 2112222222 58899999 888888887
Q ss_pred -----CCCeEEEEeCCCCCcceEEe--ccCCCcEEEEEecCC-cEEEEecCCC-----cEEEEEecCC
Q psy2113 120 -----FDNSVKLWDLRSPKVPLFDM--LGHEDKVMCVNWSDY-RYIMSGGQDN-----SVRVFKTKHQ 174 (183)
Q Consensus 120 -----~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~-~~l~~~~~dg-----~i~iwd~~~~ 174 (183)
.+..|++||+.+++. .... ..|...+..++|+|+ +.|++++.++ .|.+||+.++
T Consensus 228 ~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 228 AGTPSHHVTVGIYHLATGKT-VYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp TTSCCCEEEEEEEETTTTEE-EECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred CCCCCCeeEEEEEECCCCce-EeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 346899999988763 2222 246678999999976 7788877765 8999999876
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-12 Score=97.51 Aligned_cols=145 Identities=10% Similarity=0.015 Sum_probs=106.2
Q ss_pred EEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEc--CCCCCc
Q psy2113 14 IFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDA--ELGGMK 86 (183)
Q Consensus 14 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~--~~~~~~ 86 (183)
+|+|++.+++... +.+| +....+.+.++..+.. +..++|+|+++ +++++.|+.|++||+ .+.+.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~-------D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~- 214 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALV-------DGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK- 214 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEE-------ETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE-
T ss_pred ccCCCCEEEEEEcCCCeEEEE-------ECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcE-
Confidence 3778887666543 4444 4456667778874433 88999999876 888999999999999 55443
Q ss_pred cCceeEEEeecCCcceEEEEEec----CCCCEEEEEe-CCCeEEEEeCCCCCcceEEecc----------CC-CcEEEEE
Q psy2113 87 KGAIVKSTFSSHKEWVQSVRWSP----IDPQLFVSAS-FDNSVKLWDLRSPKVPLFDMLG----------HE-DKVMCVN 150 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~----------~~-~~v~~~~ 150 (183)
...+. +...+..++|+| + ++++++++ .++.|.+||..+.+. +..+.. |. ..+..+.
T Consensus 215 -----~~~i~-~g~~p~~va~sp~~~~d-g~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~ 286 (543)
T 1nir_A 215 -----VAEIK-IGIEARSVESSKFKGYE-DRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAII 286 (543)
T ss_dssp -----EEEEE-CCSEEEEEEECCSTTCT-TTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEE
T ss_pred -----EEEEe-cCCCcceEEeCCCcCCC-CCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEE
Confidence 44555 455689999998 5 45666665 589999999998875 555443 22 3788999
Q ss_pred ecCC--cEEEEecCCCcEEEEEecCCC
Q psy2113 151 WSDY--RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 151 ~~~~--~~l~~~~~dg~i~iwd~~~~~ 175 (183)
++++ .++++...++.|.+||+.+.+
T Consensus 287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 287 ASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp ECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred ECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 9963 677888899999999998754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.50 E-value=4.4e-13 Score=102.36 Aligned_cols=106 Identities=15% Similarity=0.097 Sum_probs=88.2
Q ss_pred eEEEEccCCe-EEEEeCC----CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC--eEEEEe
Q psy2113 56 SAVQWTAVDE-IITSSWD----HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN--SVKLWD 128 (183)
Q Consensus 56 ~~~~~~~~~~-l~s~~~d----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~vwd 128 (183)
.++.|+|+|+ +++++.+ +.|++||+.+++. ..+..|...+..++|+| +++.|+++..++ .|++||
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-------~~l~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~i~~~d 224 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-------RVFDSGEGSFSSASISP-GMKVTAGLETAREARLVTVD 224 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-------EEECCSSCEEEEEEECT-TSCEEEEEECSSCEEEEEEC
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-------eEeecCCCccccceECC-CCCEEEEccCCCeeEEEEEc
Confidence 7899999987 6656666 7899999987763 35677888899999999 888888888888 899999
Q ss_pred CCCCCcceEEeccCCCcEEEEE--------ecCC-cEEEEecCCCcEEEEEe
Q psy2113 129 LRSPKVPLFDMLGHEDKVMCVN--------WSDY-RYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 129 ~~~~~~~~~~~~~~~~~v~~~~--------~~~~-~~l~~~~~dg~i~iwd~ 171 (183)
+.+++. . .+..|...+..+. |+|+ ..+++++.|+.+++|++
T Consensus 225 ~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 225 PRDGSV-E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp TTTCCE-E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CCCCcE-E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 998875 3 6677777777777 9976 78889999999999998
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.3e-13 Score=104.58 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=101.8
Q ss_pred eEEEEEeecCcEEEEEEec--cCC----CCcccccccCccceEEE---eccCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 10 TLGVIFMTVGALLTLTNIE--VTS----LPSFFQLILQKTPLITL---KGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
..+++|+|+|..++..... .+. -....++...++. ..+ .+|...+..++|+|+|+ |+.++. +.|++||
T Consensus 63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~ 140 (723)
T 1xfd_A 63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCA 140 (723)
T ss_dssp CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEES
T ss_pred cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEE
Confidence 5678999999988876421 110 0011112223322 233 34455688999999986 666554 8999999
Q ss_pred cCCCCCccCceeEEEeecCCcc------------------eEEEEEecCCCCEEEEEeCCC-------------------
Q psy2113 80 AELGGMKKGAIVKSTFSSHKEW------------------VQSVRWSPIDPQLFVSASFDN------------------- 122 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~------------------v~~~~~~p~~~~~l~~~~~dg------------------- 122 (183)
+.+++. ......+... +.+++|+| +++.|+.++.|+
T Consensus 141 ~~~g~~------~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (723)
T 1xfd_A 141 HVGKQA------IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSP-DGTRLAYAAINDSRVPIMELPTYTGSIYPTV 213 (723)
T ss_dssp SSSSCC------EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECT-TSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred CCCCce------EEEecCCCCCceECcccceeEEEEeccCcceEEECC-CCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence 987654 2223333322 37899999 888888887543
Q ss_pred ---------------eEEEEeCCCCCcceEEeccC------CCcEEEEEecCC-cEEEEec----CCCcEEEEEecCCC
Q psy2113 123 ---------------SVKLWDLRSPKVPLFDMLGH------EDKVMCVNWSDY-RYIMSGG----QDNSVRVFKTKHQP 175 (183)
Q Consensus 123 ---------------~i~vwd~~~~~~~~~~~~~~------~~~v~~~~~~~~-~~l~~~~----~dg~i~iwd~~~~~ 175 (183)
.|++||+.+++. ...+..+ ...+..++|+|+ +++++.. .+..|++||+.+++
T Consensus 214 ~~~~~~~~G~~~~~~~l~~~d~~~~~~-~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~ 291 (723)
T 1xfd_A 214 KPYHYPKAGSENPSISLHVIGLNGPTH-DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGV 291 (723)
T ss_dssp EEEECCBTTSCCCEEEEEEEESSSSCC-CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCC
T ss_pred eeccCCCCCCCCCeeEEEEEECCCCce-eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCc
Confidence 799999988764 3444443 567899999976 5665543 23579999988765
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-12 Score=91.84 Aligned_cols=156 Identities=10% Similarity=0.011 Sum_probs=100.5
Q ss_pred eeEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEe-CCCeEEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSS-WDHTLKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~v~vwd~~ 81 (183)
...+++|+|++..+++.. +.+|.+.. .....+.+..+..+. .+..++|+|++. +++++ .++.|.+||+.
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~ 114 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP---DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLE 114 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECT---TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecC---CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECC
Confidence 345688999999877765 33332210 011223344555444 788999999876 55554 58899999995
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe-CCCeEEEEeCCC-CCcce-E--Eec-cCCCcEEEEEecCC-
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS-FDNSVKLWDLRS-PKVPL-F--DML-GHEDKVMCVNWSDY- 154 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~vwd~~~-~~~~~-~--~~~-~~~~~v~~~~~~~~- 154 (183)
.+.. ......+. ....+.+++|+| +++.+++++ .++.|.+||+.+ ++... . ... .....+..++|+|+
T Consensus 115 ~~~~---~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg 189 (343)
T 1ri6_A 115 DGLP---VGVVDVVE-GLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNE 189 (343)
T ss_dssp TTEE---EEEEEEEC-CCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTS
T ss_pred CCcc---cccccccc-CCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCC
Confidence 2211 11122333 344588999999 777676666 899999999987 44211 1 222 23457889999976
Q ss_pred cEE-EEecCCCcEEEEEecC
Q psy2113 155 RYI-MSGGQDNSVRVFKTKH 173 (183)
Q Consensus 155 ~~l-~~~~~dg~i~iwd~~~ 173 (183)
.++ +++..++.|.+||+..
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp SEEEEEETTTTEEEEEESSC
T ss_pred CEEEEEeCCCCEEEEEEecC
Confidence 555 4555899999999964
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-13 Score=104.97 Aligned_cols=150 Identities=11% Similarity=0.091 Sum_probs=104.3
Q ss_pred eEEEEEeecCcEEEEEE---eccCCCCcccccccCcc--ceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKT--PLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~ 84 (183)
..+++|+|+|..++... +.+|++ .... ....+..|...+..++|+|+|+.++...++.|++||+.+++
T Consensus 111 v~~~~~SpDg~~l~~~~~~~i~~~d~-------~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLGGELYLYDL-------KQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGR 183 (741)
T ss_dssp SCCCEECTTSSEEEEEETTEEEEEES-------SSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTE
T ss_pred cceeEECCCCCEEEEEeCCcEEEEEC-------CCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCC
Confidence 45788999999888765 444433 2221 33456678888999999999884443446799999998754
Q ss_pred CccCceeEEEeecCCcc----------------eEEEEEecCCCCEEEEEeCCC--------------------------
Q psy2113 85 MKKGAIVKSTFSSHKEW----------------VQSVRWSPIDPQLFVSASFDN-------------------------- 122 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~----------------v~~~~~~p~~~~~l~~~~~dg-------------------------- 122 (183)
. ......+... +..++|+| +++.|++++.|+
T Consensus 184 ~------~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp-Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~ 256 (741)
T 2ecf_A 184 Q------MQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAP-DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAA 256 (741)
T ss_dssp E------EECCCCCCSSEEESCCCHHHHHHSCCCCSEEECT-TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBT
T ss_pred E------EEeccCCccceeccccceeeeeccccccceEECC-CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCC
Confidence 3 1112222221 47799999 888888887665
Q ss_pred -------eEEEEeCCC-CCcceEEec--cCCCcEEEEEecCC-cEEEEecC-----CCcEEEEEecCCC
Q psy2113 123 -------SVKLWDLRS-PKVPLFDML--GHEDKVMCVNWSDY-RYIMSGGQ-----DNSVRVFKTKHQP 175 (183)
Q Consensus 123 -------~i~vwd~~~-~~~~~~~~~--~~~~~v~~~~~~~~-~~l~~~~~-----dg~i~iwd~~~~~ 175 (183)
.|++||+.+ ++. ..... .|...+..++| |+ +.|+.++. +..|.+||+.+++
T Consensus 257 g~~~~~~~l~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 257 GDANVQVKLGVISPAEQAQT-QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp TSCCCEEEEEEECSSTTCCC-EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred CCCCCeeEEEEEECCCCCce-EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence 889999988 764 33222 47788999999 87 67775543 5679999988765
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.8e-12 Score=88.31 Aligned_cols=161 Identities=13% Similarity=0.137 Sum_probs=103.6
Q ss_pred eeEEEEEeecCcEEEEEEec-----cC----CCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEE
Q psy2113 9 LTLGVIFMTVGALLTLTNIE-----VT----SLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW 78 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vw 78 (183)
...+++|+|++..+.+.... .+ .-.....+....+.+..+.. ...+.+++|+|++. ++++ ++.+++|
T Consensus 83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~ 159 (337)
T 1pby_B 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVM 159 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEE
Confidence 34568899999877766311 00 00001112334445555543 45678899999887 6665 6889999
Q ss_pred EcCCCCCccC----c--e--------------------------------------------e----------EEEeecC
Q psy2113 79 DAELGGMKKG----A--I--------------------------------------------V----------KSTFSSH 98 (183)
Q Consensus 79 d~~~~~~~~~----~--~--------------------------------------------~----------~~~~~~~ 98 (183)
|+.+++.... . . . ...+..+
T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~ 239 (337)
T 1pby_B 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence 9876542100 0 0 0 0011123
Q ss_pred CcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 99 ~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
...+.+++|+| ++++++++ ++.|.+||+.+++. ...+. ....+.+++|+++ +++++++.++.|.+||+++++..
T Consensus 240 ~~~~~~~~~s~-dg~~l~~~--~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 240 DVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNAS-IKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp SSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CCceeeEEECC-CCCEEEEe--CCeEEEEECCCCcC-cceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence 34566799999 78888777 69999999998764 44443 3346789999965 78888888999999999887643
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.4e-11 Score=88.02 Aligned_cols=156 Identities=8% Similarity=0.031 Sum_probs=97.4
Q ss_pred eEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccC-CCeeEEEEccCCe-EE-EEeCCCeEEEEEcC
Q psy2113 10 TLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHK-EAISAVQWTAVDE-II-TSSWDHTLKIWDAE 81 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~-l~-s~~~d~~v~vwd~~ 81 (183)
..+++|+|+|. +.+.+ +.+|.+.. .........+..+. .....++|+|+++ ++ +...++.+.+|++.
T Consensus 143 ~~~~~~spdg~-l~v~~~~~~~v~~~~~~~----~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 217 (347)
T 3hfq_A 143 IHYTDLTPDNR-LAVIDLGSDKVYVYNVSD----AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYD 217 (347)
T ss_dssp EEEEEECTTSC-EEEEETTTTEEEEEEECT----TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ceEEEECCCCc-EEEEeCCCCEEEEEEECC----CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence 56789999999 44443 44443320 01112222233332 3678899999987 44 45678999999987
Q ss_pred CCCCccCceeEEEeecCC------cceEEEEEecCCCCEE-EEEeCCCeEEEEeCCCC-C-cceEEeccCCCcEEEEEec
Q psy2113 82 LGGMKKGAIVKSTFSSHK------EWVQSVRWSPIDPQLF-VSASFDNSVKLWDLRSP-K-VPLFDMLGHEDKVMCVNWS 152 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~------~~v~~~~~~p~~~~~l-~~~~~dg~i~vwd~~~~-~-~~~~~~~~~~~~v~~~~~~ 152 (183)
..... ......+.... ..+..++|+| +++++ ++...++.|.+||+... . ..+..+..+...+..++|+
T Consensus 218 ~~~g~--~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~s 294 (347)
T 3hfq_A 218 TQTGA--FTQLGIVKTIPADYTAHNGAAAIRLSH-DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLD 294 (347)
T ss_dssp TTTTE--EEEEEEEESSCTTCCSCCEEEEEEECT-TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEEC
T ss_pred CCCCc--eEEeeeeeecCCCCCCCCcceeEEECC-CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEEC
Confidence 52211 01122222222 4588999999 77755 66667899999999732 2 1244455556678999999
Q ss_pred CC-cEEEEecC-CCcEEEEEecC
Q psy2113 153 DY-RYIMSGGQ-DNSVRVFKTKH 173 (183)
Q Consensus 153 ~~-~~l~~~~~-dg~i~iwd~~~ 173 (183)
|+ ++|++++. ++.|.+|++..
T Consensus 295 pdg~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 295 PTEAFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp TTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCCEEEEEEcCCCcEEEEEEeC
Confidence 76 66776665 58999996643
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.1e-11 Score=86.18 Aligned_cols=155 Identities=9% Similarity=0.054 Sum_probs=97.1
Q ss_pred eEEEEEeecCcEEEEEE-----eccCCCCcccccccCc----c-c------eEEEeccCCCeeEEEEccCCe-EEEEe-C
Q psy2113 10 TLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQK----T-P------LITLKGHKEAISAVQWTAVDE-IITSS-W 71 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----~-~------~~~~~~h~~~v~~~~~~~~~~-l~s~~-~ 71 (183)
..+++|+|+|..+.+.+ +.+|.+. .... + . ......+......++|+|+++ +++++ .
T Consensus 157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~ 231 (361)
T 3scy_A 157 LHCVRITPDGKYLLADDLGTDQIHKFNIN-----PNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEI 231 (361)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEEC-----TTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEECCCCCEEEEEeCCCCEEEEEEEc-----CCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCC
Confidence 36789999999776655 3334322 1111 1 1 111223445678999999986 55555 6
Q ss_pred CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC--CCeEEEEeCC--CCCc-ceEEeccCCCcE
Q psy2113 72 DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF--DNSVKLWDLR--SPKV-PLFDMLGHEDKV 146 (183)
Q Consensus 72 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~vwd~~--~~~~-~~~~~~~~~~~v 146 (183)
++.|.+|++.++.... .........+......++|+| ++++++++.. ++.|.+|++. +++. .+..... ...+
T Consensus 232 ~~~v~v~~~~~g~~~~-~~~~~~~~~~~~~~~~i~~sp-dg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~ 308 (361)
T 3scy_A 232 GGTVIAFRYADGMLDE-IQTVAADTVNAQGSGDIHLSP-DGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHP 308 (361)
T ss_dssp TCEEEEEEEETTEEEE-EEEEESCSSCCCCEEEEEECT-TSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCC
T ss_pred CCeEEEEEecCCceEE-eEEEecCCCCCCCcccEEECC-CCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCC
Confidence 8999999998543211 000111122334578999999 7877765554 5899999996 3332 1233333 4577
Q ss_pred EEEEecCC-cEEEEec-CCCcEEEEEec
Q psy2113 147 MCVNWSDY-RYIMSGG-QDNSVRVFKTK 172 (183)
Q Consensus 147 ~~~~~~~~-~~l~~~~-~dg~i~iwd~~ 172 (183)
..++|+|+ ++|++++ .++.|.+|++.
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 309 RNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp CEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred ceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 89999976 6677666 67899997665
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=5.6e-12 Score=102.30 Aligned_cols=149 Identities=6% Similarity=-0.042 Sum_probs=109.8
Q ss_pred eeEEEEEeecCcEEEEEEe--ccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNI--EVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~ 85 (183)
....++|+ +|..++...- .+|.+ .+... .....+.+|...+..++|+|++. |++++.++.+++||+.+++.
T Consensus 339 ~~~~~~~s-dg~~l~~~s~~~~l~~~----~d~~~-~~~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~ 412 (1045)
T 1k32_A 339 RYVRRGGD-TKVAFIHGTREGDFLGI----YDYRT-GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 412 (1045)
T ss_dssp EEEEECSS-SEEEEEEEETTEEEEEE----EETTT-CCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred eEEeeeEc-CCCeEEEEECCCceEEE----EECCC-CCceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce
Confidence 44566777 7766665431 11100 01112 22334457888999999999876 78899999999999987764
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC----------eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN----------SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY- 154 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----------~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~- 154 (183)
......|...+..++|+| +++++++++.++ .|++||+.+++ ...+..|...+..++|+|+
T Consensus 413 ------~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG 483 (1045)
T 1k32_A 413 ------TVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADS 483 (1045)
T ss_dssp ------EEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTS
T ss_pred ------EEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCC
Confidence 334557888999999999 888888876644 89999999875 5677788888999999965
Q ss_pred cEEEEecCCCcEEEEEec
Q psy2113 155 RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~ 172 (183)
.+|+.++.++...+|+..
T Consensus 484 ~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 484 KNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp CEEEEEESCCCCCEECSS
T ss_pred CEEEEEecccCCcCcchh
Confidence 788888888888888754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-12 Score=97.83 Aligned_cols=147 Identities=12% Similarity=0.043 Sum_probs=103.3
Q ss_pred EEEEEeecCcEEEEEEeccCC-CCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCC--eEEEEEcCCCCCc
Q psy2113 11 LGVIFMTVGALLTLTNIEVTS-LPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDH--TLKIWDAELGGMK 86 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~--~v~vwd~~~~~~~ 86 (183)
.+.+|+|+|+.++........ ...+..+...++ ...+..|.+.+..++|+|+|+ |+++..++ .|++||+.+++.
T Consensus 153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~-~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~- 230 (582)
T 3o4h_A 153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSV- 230 (582)
T ss_dssp CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCC-CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCE-
T ss_pred ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCC-ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcE-
Confidence 578899999998855422111 001111222333 347788889999999999987 67777788 899999987663
Q ss_pred cCceeEEEeecCCcceEEEE--------EecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEE
Q psy2113 87 KGAIVKSTFSSHKEWVQSVR--------WSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~--------~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~ 158 (183)
. .+..|...+..+. |+| ++.++++++.|+.+++|++ ++. .. .....+.+++|+++..++
T Consensus 231 -----~-~~~~~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~g~~~l~~~--g~~-~~---~~~~~v~~~~~sdg~~l~ 297 (582)
T 3o4h_A 231 -----E-DLELPSKDFSSYRPTAITWLGYLP-DGRLAVVARREGRSAVFID--GER-VE---APQGNHGRVVLWRGKLVT 297 (582)
T ss_dssp -----E-ECCCSCSHHHHHCCSEEEEEEECT-TSCEEEEEEETTEEEEEET--TEE-EC---CCSSEEEEEEEETTEEEE
T ss_pred -----E-EccCCCcChhhhhhccccceeEcC-CCcEEEEEEcCCcEEEEEE--CCe-ec---cCCCceEEEEecCCEEEE
Confidence 3 5566766666666 999 6689999999999999999 432 21 344678899999557777
Q ss_pred EecCCCc---EEEEEec
Q psy2113 159 SGGQDNS---VRVFKTK 172 (183)
Q Consensus 159 ~~~~dg~---i~iwd~~ 172 (183)
+++.+.. +.+||..
T Consensus 298 ~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 298 SHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEETTEEEEEEEETTC
T ss_pred EEcCCCCCCeEEEEcCC
Confidence 7777644 5666654
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-11 Score=86.81 Aligned_cols=155 Identities=11% Similarity=0.097 Sum_probs=100.3
Q ss_pred eEEEEEeecCcEEEEEE------eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEe-CCCeEEEEEcC
Q psy2113 10 TLGVIFMTVGALLTLTN------IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSS-WDHTLKIWDAE 81 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~v~vwd~~ 81 (183)
...++|+|+|.++++.. +.+|++ .....+.+..+..+...+..++|+|++. |++++ .++.+.+|++.
T Consensus 42 p~~~a~spdg~l~~~~~~~~~~~v~~~~~-----~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 42 PTYLALSAKDCLYSVDKEDDEGGIAAWQI-----DGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp CCCEEECTTCEEEEEEEETTEEEEEEEEE-----ETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred cceEEEccCCeEEEEEecCCCceEEEEEe-----cCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeC
Confidence 44688999999554432 334432 1112234555566788899999999886 66666 78999999996
Q ss_pred CCCCccCceeEEEeec---------CCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC-CCCcc-eEEecc-CCCcEEEE
Q psy2113 82 LGGMKKGAIVKSTFSS---------HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR-SPKVP-LFDMLG-HEDKVMCV 149 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~---------~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~-~~~~~-~~~~~~-~~~~v~~~ 149 (183)
...... ....+.. +...+.+++|+| +++++++...++.|.+||+. +++.. ...... ....+..+
T Consensus 117 ~~g~~~---~~~~~~~~~~~p~~~~~~~~~~~~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~ 192 (347)
T 3hfq_A 117 ADGALT---LTDTVQHSGHGPRPEQDGSHIHYTDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHL 192 (347)
T ss_dssp TTSCEE---EEEEEECCCCCSSTTCSSCCEEEEEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEE
T ss_pred CCCCee---ecceeecCCCCCCccccCCCceEEEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceE
Confidence 432211 1222211 123488999999 66777777778999999998 44321 111122 23467889
Q ss_pred EecCC-cEE-EEecCCCcEEEEEecC
Q psy2113 150 NWSDY-RYI-MSGGQDNSVRVFKTKH 173 (183)
Q Consensus 150 ~~~~~-~~l-~~~~~dg~i~iwd~~~ 173 (183)
+|+|+ +++ ++...++.|.+|++..
T Consensus 193 ~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 193 VFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EECCCCCEEEEEeCCCCEEEEEEecC
Confidence 99976 544 4567789999999885
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.6e-13 Score=103.27 Aligned_cols=142 Identities=17% Similarity=0.190 Sum_probs=94.2
Q ss_pred eeceeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCC---CeeEEEEccCCe-EEEEeC-------
Q psy2113 6 FGILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKE---AISAVQWTAVDE-IITSSW------- 71 (183)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~-l~s~~~------- 71 (183)
|.....+..|+|++.+++... +.+| +...++....+..|.. .+.+++|+|+|+ |+.++.
T Consensus 14 ~~~~~~~~~~s~dg~~~~~~~d~~i~~~-------~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 14 FSYKTFFPNWISGQEYLHQSADNNIVLY-------NIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRY 86 (719)
T ss_dssp TCCCCCCCEESSSSEEEEECTTSCEEEE-------ESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSS
T ss_pred ccCCCCccEECCCCeEEEEcCCCCEEEE-------EcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEe
Confidence 344445788999997665532 3333 3344555555555543 489999999987 666655
Q ss_pred --CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcE---
Q psy2113 72 --DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKV--- 146 (183)
Q Consensus 72 --d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v--- 146 (183)
++.+++||+.+++.... ..+ ...+..++|+| +++.|+.+. ++.|++||+.+++.......++...+
T Consensus 87 s~~~~i~~~d~~~g~~~~~----~~l---~~~~~~~~~SP-DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g 157 (719)
T 1z68_A 87 SYTATYYIYDLSNGEFVRG----NEL---PRPIQYLCWSP-VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNG 157 (719)
T ss_dssp CEEEEEEEEETTTTEECCS----SCC---CSSBCCEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEES
T ss_pred ecceEEEEEECCCCccccc----eec---CcccccceECC-CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcc
Confidence 68999999987653100 111 24588899999 888888875 78999999988764211122333322
Q ss_pred --------------EEEEecCC-cEEEEecCC
Q psy2113 147 --------------MCVNWSDY-RYIMSGGQD 163 (183)
Q Consensus 147 --------------~~~~~~~~-~~l~~~~~d 163 (183)
..++|+|+ +.|+.++.|
T Consensus 158 ~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 158 IPDWVYEEEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp SCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred cccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence 48999976 788887765
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-11 Score=84.68 Aligned_cols=155 Identities=7% Similarity=0.118 Sum_probs=95.4
Q ss_pred eEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceE--EEec-cCCCeeEEEEccCCe-EE-EEeCCCeEEEEE
Q psy2113 10 TLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLI--TLKG-HKEAISAVQWTAVDE-II-TSSWDHTLKIWD 79 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~--~~~~-h~~~v~~~~~~~~~~-l~-s~~~d~~v~vwd 79 (183)
+.+++|+|++..+.+.. +.+|++.. ........ .+.. ....+..++|+|++. ++ ++..++.+.+|+
T Consensus 131 ~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~ 206 (343)
T 1ri6_A 131 CHSANISPDNRTLWVPALKQDRICLFTVSD----DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWE 206 (343)
T ss_dssp BCCCEECTTSSEEEEEEGGGTEEEEEEECT----TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ceEEEECCCCCEEEEecCCCCEEEEEEecC----CCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence 45678999998777654 44443321 01111111 2333 334788999999886 54 455889999999
Q ss_pred cCCCCCccCceeEEEee---cC---CcceEEEEEecCCCCEEE-EEeCCCeEEEEeCCC--CCc-ceEEeccCCCcEEEE
Q psy2113 80 AELGGMKKGAIVKSTFS---SH---KEWVQSVRWSPIDPQLFV-SASFDNSVKLWDLRS--PKV-PLFDMLGHEDKVMCV 149 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~---~~---~~~v~~~~~~p~~~~~l~-~~~~dg~i~vwd~~~--~~~-~~~~~~~~~~~v~~~ 149 (183)
+....... ....... .. ...+..++|+| ++++++ ++..++.|.+||+.. +.. .+..+..+.. +..+
T Consensus 207 ~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~ 282 (343)
T 1ri6_A 207 LKDPHGNI--ECVQTLDMMPENFSDTRWAADIHITP-DGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGF 282 (343)
T ss_dssp SSCTTSCC--EEEEEEECSCTTCCSCCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCE
T ss_pred ecCCCCcE--EEEeeccccCccccccCCccceEECC-CCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceE
Confidence 96422111 0111111 11 23567899999 666555 555789999999983 221 1333434433 8899
Q ss_pred EecCC-cEEEEec-CCCcEEEEEec
Q psy2113 150 NWSDY-RYIMSGG-QDNSVRVFKTK 172 (183)
Q Consensus 150 ~~~~~-~~l~~~~-~dg~i~iwd~~ 172 (183)
+|+++ .++++++ .++.|.+|++.
T Consensus 283 ~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 283 NVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp EECTTSSEEEEECTTTCEEEEEEEE
T ss_pred EECCCCCEEEEecCCCCeEEEEEEc
Confidence 99965 6676666 68999999665
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-12 Score=98.14 Aligned_cols=156 Identities=12% Similarity=0.182 Sum_probs=100.4
Q ss_pred eEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCC--------------eeEEEEccCCe-EEEEe-
Q psy2113 10 TLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEA--------------ISAVQWTAVDE-IITSS- 70 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------------v~~~~~~~~~~-l~s~~- 70 (183)
..+++|+|+|..++... +.+|++... .....+.......+... +.++.|+|+++ |++++
T Consensus 123 ~~~~~~SpdG~~la~~~~~~i~v~~~~~~--~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~ 200 (706)
T 2z3z_A 123 TASLDFSPVGDRVAYVRNHNLYIARGGKL--GEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRM 200 (706)
T ss_dssp CTTCEECTTSSEEEEEETTEEEEEECBCT--TSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEE
T ss_pred ccCCcCCCCCCEEEEEECCeEEEEecCcc--cccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEE
Confidence 34578999999887754 444433210 00002222222223332 58999999987 66666
Q ss_pred --------------------------------CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEE
Q psy2113 71 --------------------------------WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118 (183)
Q Consensus 71 --------------------------------~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 118 (183)
.+..|++||+.+++... ......|...+..++|+| +++.++++
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~----~~~~~~~~~~~~~~~~sp-dg~~l~~~ 275 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVY----LQTGEPKEKFLTNLSWSP-DENILYVA 275 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEE----CCCCSCTTCEEEEEEECT-TSSEEEEE
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEe----eccCCCCceeEeeEEEEC-CCCEEEEE
Confidence 44689999998765311 111124667899999999 88888887
Q ss_pred eCCC-----eEEEEeCCCCCcceEEec-cCCC---cEEEEEecC--C-cEEEEecCCCcEEEEEec
Q psy2113 119 SFDN-----SVKLWDLRSPKVPLFDML-GHED---KVMCVNWSD--Y-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 119 ~~dg-----~i~vwd~~~~~~~~~~~~-~~~~---~v~~~~~~~--~-~~l~~~~~dg~i~iwd~~ 172 (183)
+.++ .|++||+.+++....... .+.. .+..+.|+| + .+++++..||.+++|++.
T Consensus 276 ~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 276 EVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp EECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred EeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 7665 999999998843122221 2222 246789998 6 788888899999999886
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=3.3e-11 Score=87.47 Aligned_cols=147 Identities=16% Similarity=0.065 Sum_probs=104.0
Q ss_pred eEEEEEeecCcEEEEEE---eccCCCCcccccc----cCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCC
Q psy2113 10 TLGVIFMTVGALLTLTN---IEVTSLPSFFQLI----LQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~ 82 (183)
+..+++++...++++++ +.+|......... ...++.... .+.. |+.++| .+..|+++ .++.|++||+++
T Consensus 40 ~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f-d~~~L~v~-~~~~l~v~dv~s 115 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF-HGDQVLVS-TRNALYSLDLEE 115 (388)
T ss_dssp CBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE-ETTEEEEE-ESSEEEEEESSS
T ss_pred ccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE-CCCEEEEE-cCCcEEEEEchh
Confidence 56678888888888776 4445433322100 001222233 3556 999999 55557776 889999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecC
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQ 162 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 162 (183)
... ......|...+.++.+.+ . .++++..||.+.+||+.++.. .. +...|.+++|+|.. ++.|..
T Consensus 116 l~~------~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~-~~----~~~~Vs~v~WSpkG-~~vg~~ 180 (388)
T 1xip_A 116 LSE------FRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKST-KQ----LAQNVTSFDVTNSQ-LAVLLK 180 (388)
T ss_dssp TTC------EEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCE-EE----EEESEEEEEECSSE-EEEEET
T ss_pred hhc------cCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcc-cc----ccCCceEEEEcCCc-eEEEEc
Confidence 653 334556777788887765 2 388889999999999997764 22 45689999999877 788999
Q ss_pred CCcEEEEEecCCC
Q psy2113 163 DNSVRVFKTKHQP 175 (183)
Q Consensus 163 dg~i~iwd~~~~~ 175 (183)
||++++|+....+
T Consensus 181 dg~i~~~~~~~~~ 193 (388)
T 1xip_A 181 DRSFQSFAWRNGE 193 (388)
T ss_dssp TSCEEEEEEETTE
T ss_pred CCcEEEEcCCCcc
Confidence 9999999887665
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-10 Score=82.76 Aligned_cols=146 Identities=16% Similarity=0.129 Sum_probs=96.4
Q ss_pred EEeecCcEEEEEE-----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEe-CCCeEEEEEcCCCCCc
Q psy2113 14 IFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSS-WDHTLKIWDAELGGMK 86 (183)
Q Consensus 14 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~-~d~~v~vwd~~~~~~~ 86 (183)
.|.+++..+.+.+ +.+| +....+.+..+..+.... .++|+|++. +++++ .++.|.+||..+++..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~-------d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 75 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFF-------STDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK 75 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEE-------ETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred eEcCCCCEEEEEecCCCeEEEE-------eCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence 4555555554443 4444 333455556666666667 999999876 55544 4899999999876531
Q ss_pred cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC---eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-c-EEEEec
Q psy2113 87 KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN---SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-R-YIMSGG 161 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~ 161 (183)
...+..+..+..+++|+| ++++++++..++ .|.+||+.+++. ...+.. ...+..++|+|+ + .+++..
T Consensus 76 -----~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~spdg~~l~~~~~ 147 (331)
T 3u4y_A 76 -----VVAIQEGQSSMADVDITP-DDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIPI-PYDAVGIAISPNGNGLILIDR 147 (331)
T ss_dssp -----EEEEEECSSCCCCEEECT-TSSEEEECCCSSSSCEEEEEETTTTEE-EEEEEC-CTTEEEEEECTTSSCEEEEEE
T ss_pred -----EEecccCCCCccceEECC-CCCEEEEecCCCCcccEEEEECCCCCe-EEEEEC-CCCccceEECCCCCEEEEEec
Confidence 234445555555599999 788888555553 999999998764 444443 445689999976 4 445556
Q ss_pred CCCc-EEEEEecCCC
Q psy2113 162 QDNS-VRVFKTKHQP 175 (183)
Q Consensus 162 ~dg~-i~iwd~~~~~ 175 (183)
.++. |.+|++....
T Consensus 148 ~~~~~i~~~~~~~~g 162 (331)
T 3u4y_A 148 SSANTVRRFKIDADG 162 (331)
T ss_dssp TTTTEEEEEEECTTC
T ss_pred CCCceEEEEEECCCC
Confidence 6688 9999987543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.39 E-value=2.6e-11 Score=86.39 Aligned_cols=160 Identities=15% Similarity=0.127 Sum_probs=97.2
Q ss_pred eEEEEEeecCcEEEEEEec--c----C---CCCcccccccC---ccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEE
Q psy2113 10 TLGVIFMTVGALLTLTNIE--V----T---SLPSFFQLILQ---KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKI 77 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~--~----~---~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~v 77 (183)
..+++|+|+|..+++.... . + .-.....+... .+.+..+. +...+.+++|+|++.+++++. .|.+
T Consensus 94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~l~~~~~--~i~~ 170 (349)
T 1jmx_B 94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAADDGSLYVAGP--DIYK 170 (349)
T ss_dssp SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECTTSCEEEESS--SEEE
T ss_pred ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECCCCcEEEccC--cEEE
Confidence 5678999999888776521 0 0 00000111122 22333443 334688999999888666543 4999
Q ss_pred EEcCCCCCccCce-----------------------------eE---------------------------------EEe
Q psy2113 78 WDAELGGMKKGAI-----------------------------VK---------------------------------STF 95 (183)
Q Consensus 78 wd~~~~~~~~~~~-----------------------------~~---------------------------------~~~ 95 (183)
||..+++...... +. ..+
T Consensus 171 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (349)
T 1jmx_B 171 MDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEF 250 (349)
T ss_dssp ECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEE
T ss_pred EeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccc
Confidence 9987765321000 00 000
Q ss_pred ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 96 SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 96 ~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
..+...+..++++|.++++++++ ++.|.+||+.+++. ...+. ....+.+++|+++ ++|++++.++.|.+||+++.
T Consensus 251 ~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 251 ADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKL-IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp EECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEE-EEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred ccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeE-EEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 00112455677778345566666 78999999998764 33333 3345778999965 77888888999999999876
Q ss_pred CC
Q psy2113 175 PK 176 (183)
Q Consensus 175 ~~ 176 (183)
+.
T Consensus 327 ~~ 328 (349)
T 1jmx_B 327 EK 328 (349)
T ss_dssp EE
T ss_pred ce
Confidence 54
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-09 Score=76.17 Aligned_cols=150 Identities=12% Similarity=0.187 Sum_probs=100.1
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEe--ccCCCeeEEEEccCCeE-EEEeCCCeEEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLK--GHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~l-~s~~~d~~v~vwd~~ 81 (183)
...++++++++.++.+.. +..++. ..+.+..+. .+...+.++++++++.+ ++...++.|++||..
T Consensus 122 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~--------~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 193 (286)
T 1q7f_A 122 HPRGVTVDNKGRIIVVECKVMRVIIFDQ--------NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE 193 (286)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT--------TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred CceEEEEeCCCCEEEEECCCCEEEEEcC--------CCCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence 356788999998666532 333321 233344443 34557899999998875 555678999999975
Q ss_pred CCCCccCceeEEEeecC--CcceEEEEEecCCCCEEEEEeCCC-eEEEEeCCCCCcceEEeccCC--CcEEEEEecCCcE
Q psy2113 82 LGGMKKGAIVKSTFSSH--KEWVQSVRWSPIDPQLFVSASFDN-SVKLWDLRSPKVPLFDMLGHE--DKVMCVNWSDYRY 156 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~--~~~v~~~~~~p~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~ 156 (183)
... ...+..+ ...+..++++| +++++++...++ .|.+||.. ++. +..+..+. ..+..++++++..
T Consensus 194 g~~-------~~~~~~~g~~~~p~~i~~d~-~G~l~v~~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~~i~~~~~g~ 263 (286)
T 1q7f_A 194 GQY-------LRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQD-GQL-ISALESKVKHAQCFDVALMDDGS 263 (286)
T ss_dssp CCE-------EEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECTT-SCE-EEEEEESSCCSCEEEEEEETTTE
T ss_pred CCE-------EEEEccCCccCCCcEEEECC-CCCEEEEeCCCCEEEEEECCC-CCE-EEEEcccCCCCcceeEEECCCCc
Confidence 322 3333322 35789999999 788888887776 99999964 333 44444333 3478999997644
Q ss_pred EEEecCCCcEEEEEecCCCC
Q psy2113 157 IMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~~~~ 176 (183)
++.++.|+.|++|++.....
T Consensus 264 l~vs~~~~~v~v~~~~~~~p 283 (286)
T 1q7f_A 264 VVLASKDYRLYIYRYVQLAP 283 (286)
T ss_dssp EEEEETTTEEEEEECSCCCC
T ss_pred EEEECCCCeEEEEEcccccc
Confidence 44446799999999876543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=8.2e-11 Score=84.94 Aligned_cols=160 Identities=6% Similarity=-0.042 Sum_probs=97.6
Q ss_pred eeEEEEEeecCcEEEEEE-----eccCCCCcccccccCccceEEEe--ccCCCeeEEEEccCCe-EEEEe-CCCeEEEEE
Q psy2113 9 LTLGVIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITLK--GHKEAISAVQWTAVDE-IITSS-WDHTLKIWD 79 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~~~~~-l~s~~-~d~~v~vwd 79 (183)
...+++|+|+|..+.+.+ +.+|.+.. ......+..+. .|...+..++|+|+++ +++++ .++.+.+|+
T Consensus 146 ~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~----~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~ 221 (365)
T 1jof_A 146 GIHGMVFDPTETYLYSADLTANKLWTHRKLA----SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYV 221 (365)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECT----TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred cceEEEECCCCCEEEEEcCCCCEEEEEEECC----CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEE
Confidence 466889999999887765 33332210 11112223333 2456789999999986 55555 478999998
Q ss_pred cCC--CCCccCceeEEEee----cCCc------ceEEEE-EecCCCCEEEEEeCC-C-----eEEEEeCC-CCCcceE--
Q psy2113 80 AEL--GGMKKGAIVKSTFS----SHKE------WVQSVR-WSPIDPQLFVSASFD-N-----SVKLWDLR-SPKVPLF-- 137 (183)
Q Consensus 80 ~~~--~~~~~~~~~~~~~~----~~~~------~v~~~~-~~p~~~~~l~~~~~d-g-----~i~vwd~~-~~~~~~~-- 137 (183)
+.. ++..........+. +|.. .+..++ |+| ++++++++..+ . .|.+|++. +++. ..
T Consensus 222 ~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp-dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~-~~~~ 299 (365)
T 1jof_A 222 IDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSI-EKQL 299 (365)
T ss_dssp ECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCE-EEEE
T ss_pred EeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC-CCCEEEEECCCCCCCCCCeEEEEEECCCCCE-EEee
Confidence 753 32110000011111 1222 588999 999 78777665532 3 89999996 4442 21
Q ss_pred -EeccCCCcEEEEEecC----CcEEEEecC-CCcEEEEEecCC
Q psy2113 138 -DMLGHEDKVMCVNWSD----YRYIMSGGQ-DNSVRVFKTKHQ 174 (183)
Q Consensus 138 -~~~~~~~~v~~~~~~~----~~~l~~~~~-dg~i~iwd~~~~ 174 (183)
....+...+..++|+| +++|++++. ++.|.+|++...
T Consensus 300 ~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 300 FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 1333444566788887 588888876 489999998764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-11 Score=85.68 Aligned_cols=148 Identities=10% Similarity=0.016 Sum_probs=97.2
Q ss_pred EEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccC-CCeeEEEEccCCe-E-EEEeCCCeEEEEEcCCCC
Q psy2113 12 GVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHK-EAISAVQWTAVDE-I-ITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~~~~ 84 (183)
++++++++.++++.. +.+| +....+.+..+..+. ..+..++|+|++. + ++...++.|.+||+.+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~-------d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~ 76 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVV-------DVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK 76 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEE-------ETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred cccccCCCEEEEEeCCCCeEEEE-------ECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc
Confidence 445667777666654 4444 333455555665443 2578999999875 4 456678999999998765
Q ss_pred CccCceeEEEeec-C-----CcceEEEEEecCCCCEEEEEeCC------------CeEEEEeCCCCCc--ceEEeccCCC
Q psy2113 85 MKKGAIVKSTFSS-H-----KEWVQSVRWSPIDPQLFVSASFD------------NSVKLWDLRSPKV--PLFDMLGHED 144 (183)
Q Consensus 85 ~~~~~~~~~~~~~-~-----~~~v~~~~~~p~~~~~l~~~~~d------------g~i~vwd~~~~~~--~~~~~~~~~~ 144 (183)
. ...+.. + ...+..++|+| +++++++++.+ +.|.+||+.+++. ...... +..
T Consensus 77 ~------~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~ 148 (349)
T 1jmx_B 77 N------TFHANLSSVPGEVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPR 148 (349)
T ss_dssp E------EEEEESCCSTTEEEECSSCEEECT-TSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCS
T ss_pred E------EEEEEcccccccccccccceEECC-CCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCC
Confidence 3 223332 2 23377899999 78888888765 8999999987432 122332 334
Q ss_pred cEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 145 KVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 145 ~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.+.+++|+|+..+++++ +.|.+||+.+++.
T Consensus 149 ~~~~~~~s~dg~l~~~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 149 QVYLMRAADDGSLYVAG--PDIYKMDVKTGKY 178 (349)
T ss_dssp SCCCEEECTTSCEEEES--SSEEEECTTTCCE
T ss_pred cccceeECCCCcEEEcc--CcEEEEeCCCCce
Confidence 68889999763366654 3499999887653
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-09 Score=78.13 Aligned_cols=162 Identities=11% Similarity=0.025 Sum_probs=96.5
Q ss_pred EEEEEeecCcEEEEEEec---cCCCCccccccc--CccceEEEeccCCCeeEEEEccCCeEEEEe-CCCeEEEEEcCCCC
Q psy2113 11 LGVIFMTVGALLTLTNIE---VTSLPSFFQLIL--QKTPLITLKGHKEAISAVQWTAVDEIITSS-WDHTLKIWDAELGG 84 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~ 84 (183)
..++|+|++..+.+.+.. ...+..+..+.. ..+.+.....+......+++ .+..+++++ .++.+.+|++....
T Consensus 53 ~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~-dg~~l~~~~~~~~~v~~~~~~~~g 131 (361)
T 3scy_A 53 SYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT-NGKNIVTANYSGGSITVFPIGQDG 131 (361)
T ss_dssp CSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE-CSSEEEEEETTTTEEEEEEBCTTS
T ss_pred ceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE-CCCEEEEEECCCCEEEEEEeCCCC
Confidence 457899999987776532 011111111111 12334444445566777888 444455554 68899999997543
Q ss_pred CccCceeEEEeec--------CCcceEEEEEecCCCCEE-EEEeCCCeEEEEeCCCCCc------c------eEEeccCC
Q psy2113 85 MKKGAIVKSTFSS--------HKEWVQSVRWSPIDPQLF-VSASFDNSVKLWDLRSPKV------P------LFDMLGHE 143 (183)
Q Consensus 85 ~~~~~~~~~~~~~--------~~~~v~~~~~~p~~~~~l-~~~~~dg~i~vwd~~~~~~------~------~~~~~~~~ 143 (183)
............+ +...+++++|+| +++++ ++...++.|.+|++..... . ........
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 210 (361)
T 3scy_A 132 ALLPASDVIEFKGSGPDKERQTMPHLHCVRITP-DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPG 210 (361)
T ss_dssp CBCSCSEEEECCCCCSCTTTCSSCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTT
T ss_pred cCcccceeEEccCCCCCccccCCCcceEEEECC-CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCC
Confidence 3221111111111 223468899999 77755 4455588999998875431 1 12223445
Q ss_pred CcEEEEEecCC-cEEEEec-CCCcEEEEEecCC
Q psy2113 144 DKVMCVNWSDY-RYIMSGG-QDNSVRVFKTKHQ 174 (183)
Q Consensus 144 ~~v~~~~~~~~-~~l~~~~-~dg~i~iwd~~~~ 174 (183)
..+..++|+|+ +++++++ .++.|.+||+.++
T Consensus 211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 56789999976 6666655 6899999999854
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.5e-11 Score=91.24 Aligned_cols=149 Identities=13% Similarity=0.061 Sum_probs=97.1
Q ss_pred eecCcE-EEEEEeccCCCCccccccc-Cc-cceEEEec-----cCCCeeEEEEccCCe-EEEEeCC----------CeEE
Q psy2113 16 MTVGAL-LTLTNIEVTSLPSFFQLIL-QK-TPLITLKG-----HKEAISAVQWTAVDE-IITSSWD----------HTLK 76 (183)
Q Consensus 16 ~~~~~~-~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-----h~~~v~~~~~~~~~~-l~s~~~d----------~~v~ 76 (183)
||+|.. ++...-....+. ..+.. .. .....+.. |...+..++|+|+++ |+.++.+ ..|+
T Consensus 87 SPDg~~~la~~~~~~~~l~--~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~ 164 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLY--AFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLA 164 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEE--EECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEE--EEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEE
Confidence 499988 776542211111 11111 01 23345555 566788999999886 7777665 5899
Q ss_pred EEEcCC------CCCccCceeEEEee-cCCcceEEEEEecCCCCEEEEEeCC--------CeEEEEeCC-CCC--cceEE
Q psy2113 77 IWDAEL------GGMKKGAIVKSTFS-SHKEWVQSVRWSPIDPQLFVSASFD--------NSVKLWDLR-SPK--VPLFD 138 (183)
Q Consensus 77 vwd~~~------~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~vwd~~-~~~--~~~~~ 138 (183)
+||+.+ +. ...+. .+...+..++|+| +++.|+.++.+ ..|++||+. ++. .....
T Consensus 165 ~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~~Sp-DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l 236 (662)
T 3azo_A 165 AVPLDGSAAADRSA-------VRELSDDAHRFVTGPRLSP-DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTL 236 (662)
T ss_dssp EEETTSTTTTCGGG-------SEESSCSCSSEECCCEECT-TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEE
T ss_pred EEECCCCccccCCc-------eeEEEecCCCcccCceECC-CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEe
Confidence 999976 33 22344 5566788899999 88888877654 379999998 451 21333
Q ss_pred eccCCCcEEEEEecCC-cEEEEecCCC--cEEEEEecCC
Q psy2113 139 MLGHEDKVMCVNWSDY-RYIMSGGQDN--SVRVFKTKHQ 174 (183)
Q Consensus 139 ~~~~~~~v~~~~~~~~-~~l~~~~~dg--~i~iwd~~~~ 174 (183)
...+...+..+.|+|+ ++++++..++ .|.+||+.++
T Consensus 237 ~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~ 275 (662)
T 3azo_A 237 LGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATG 275 (662)
T ss_dssp EEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTC
T ss_pred CCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCC
Confidence 4455788999999965 7777888888 4555555443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=2.7e-10 Score=80.58 Aligned_cols=124 Identities=10% Similarity=0.031 Sum_probs=86.5
Q ss_pred CccceEEEeccCC--CeeEEEEccCCe-E-EEEeCCCeEEEEEcCCCCCccCceeEEEeec-C----CcceEEEEEecCC
Q psy2113 41 QKTPLITLKGHKE--AISAVQWTAVDE-I-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSS-H----KEWVQSVRWSPID 111 (183)
Q Consensus 41 ~~~~~~~~~~h~~--~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~-~----~~~v~~~~~~p~~ 111 (183)
..+.+..+..... .+..++|+|++. + ++++.++.|.+||+.+++. ...+.. + ...+..++|+| +
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~s~-d 92 (337)
T 1pby_B 20 KMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET------LGRIDLSTPEERVKSLFGAALSP-D 92 (337)
T ss_dssp TTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE------EEEEECCBTTEEEECTTCEEECT-T
T ss_pred CCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe------EeeEEcCCcccccccccceEECC-C
Confidence 3444555543221 478999999874 4 5666789999999987664 223321 1 22567899999 7
Q ss_pred CCEEEEEe------------CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 112 PQLFVSAS------------FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 112 ~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
++.++++. .++.|.+||+.+++. ...+.. ...+..++|+|+ .+++++ ++.|.+||+++++
T Consensus 93 g~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~ 165 (337)
T 1pby_B 93 GKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGT 165 (337)
T ss_dssp SSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTE
T ss_pred CCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCc
Confidence 87777775 579999999988764 434433 456788899966 667666 6899999998764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-10 Score=88.77 Aligned_cols=160 Identities=11% Similarity=0.073 Sum_probs=99.9
Q ss_pred eceeEEEEEeecCcEEEEEEeccC------C-CCcccccccCc-----cceEEEe-ccCCCeeEEEEccCCe-EEEEeCC
Q psy2113 7 GILTLGVIFMTVGALLTLTNIEVT------S-LPSFFQLILQK-----TPLITLK-GHKEAISAVQWTAVDE-IITSSWD 72 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~-----~~~~~~~-~h~~~v~~~~~~~~~~-l~s~~~d 72 (183)
+....+++|+|+|..++....... . ......+.... .....+. .+...+..+.|+|+|+ |+.++.+
T Consensus 129 ~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~ 208 (662)
T 3azo_A 129 GLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWD 208 (662)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEEC
T ss_pred CccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECC
Confidence 345678899999998876542210 0 00011122220 2334555 5667788899999987 6656544
Q ss_pred --------CeEEEEEcC-CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC--eEEEEeCCCCCcceEEecc
Q psy2113 73 --------HTLKIWDAE-LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN--SVKLWDLRSPKVPLFDMLG 141 (183)
Q Consensus 73 --------~~v~vwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~ 141 (183)
..|++||+. ++.... .......+...+..+.|+| ++++++++..++ .|.+||..+++. ......
T Consensus 209 ~~~~~~~~~~i~~~d~~~~g~~~~---~~~l~~~~~~~~~~~~~sp-dg~l~~~~~~~~~~~l~~~~~~~~~~-~~l~~~ 283 (662)
T 3azo_A 209 HPRMPWEGTELKTARVTEDGRFAD---TRTLLGGPEEAIAQAEWAP-DGSLIVATDRTGWWNLHRVDPATGAA-TQLCRR 283 (662)
T ss_dssp TTCCTTTCEEEEEEEECTTSCEEE---EEEEEEETTBCEEEEEECT-TSCEEEEECTTSSCEEEEECTTTCCE-EESSCC
T ss_pred CCCCCCCCcEEEEEEECCCCcccc---cEEeCCCCCceEcceEECC-CCeEEEEECCCCCeEEEEEECCCCce-eecccc
Confidence 479999998 341100 1223344578899999999 777888888888 677777766553 222222
Q ss_pred CCCc--------EEEEEecCC-cEEEEecCCCcEEEEEec
Q psy2113 142 HEDK--------VMCVNWSDY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 142 ~~~~--------v~~~~~~~~-~~l~~~~~dg~i~iwd~~ 172 (183)
+... +..++|+++ .+++++.. +.+++|.+.
T Consensus 284 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 284 EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred cccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 2221 467888855 77888888 999999544
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=5.7e-10 Score=80.53 Aligned_cols=154 Identities=9% Similarity=0.016 Sum_probs=96.8
Q ss_pred eEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEec-cCCCeeEEEEccCCe--EE-EEe------------
Q psy2113 10 TLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKG-HKEAISAVQWTAVDE--II-TSS------------ 70 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~--l~-s~~------------ 70 (183)
...++|+|++..+.+.+ +.+|.+. ..++....... ..+....++|+|+++ ++ ++.
T Consensus 42 ~~~~a~spdg~~l~~~~~~~v~~~~~~------~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 42 ISWMTFDHERKNIYGAAMKKWSSFAVK------SPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp CSEEEECTTSSEEEEEEBTEEEEEEEE------ETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CcEEEECCCCCEEEEEccceEEEEEEC------CCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 45789999999877665 3333321 12332222211 113356788999987 33 442
Q ss_pred -CCCeEEEEEcCC-CCCccCceeEEEee-cCCcceEEEEEecCCCCEEEEEe-CCCeEEEEeCC-CCCcc-eEEec--cC
Q psy2113 71 -WDHTLKIWDAEL-GGMKKGAIVKSTFS-SHKEWVQSVRWSPIDPQLFVSAS-FDNSVKLWDLR-SPKVP-LFDML--GH 142 (183)
Q Consensus 71 -~d~~v~vwd~~~-~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~vwd~~-~~~~~-~~~~~--~~ 142 (183)
.++.+.+|++.. ++... ....+. .+...+.+++|+| ++++++++. .++.|++||+. +++.. ..... .+
T Consensus 116 ~~~g~v~v~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~sp-dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~ 191 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEK---NVQNYEYQENTGIHGMVFDP-TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP 191 (365)
T ss_dssp SSCCEEEEEEECTTCCEEE---EEEEEECCTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST
T ss_pred cCCceEEEEccCCCCcCcc---eEeeEEeCCCCcceEEEECC-CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC
Confidence 689999999974 33211 011111 2456799999999 787777665 46799999998 66531 12222 24
Q ss_pred CCcEEEEEecCC-cEEEEec-CCCcEEEEEecC
Q psy2113 143 EDKVMCVNWSDY-RYIMSGG-QDNSVRVFKTKH 173 (183)
Q Consensus 143 ~~~v~~~~~~~~-~~l~~~~-~dg~i~iwd~~~ 173 (183)
...+..++|+|+ +++++++ .++.|.+|++..
T Consensus 192 g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 224 (365)
T 1jof_A 192 GDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP 224 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence 567899999976 6776665 478999998763
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.23 E-value=7.2e-11 Score=92.67 Aligned_cols=140 Identities=14% Similarity=0.091 Sum_probs=95.3
Q ss_pred eceeEEEEEeecCcEEEEEE--eccCCCCcccccccCccceEEEeccCCC-----eeEEEEccCCe-EEEEeCC------
Q psy2113 7 GILTLGVIFMTVGALLTLTN--IEVTSLPSFFQLILQKTPLITLKGHKEA-----ISAVQWTAVDE-IITSSWD------ 72 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~~~~~~~~~-l~s~~~d------ 72 (183)
.....++.|+|++.+++..+ +.+| +...++....+.+|... ...+.|+|+++ ++.++.+
T Consensus 16 ~~~~~~~~w~~dg~~~~~~~~~i~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~ 88 (740)
T 4a5s_A 16 RLKLYSLRWISDHEYLYKQENNILVF-------NAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRH 88 (740)
T ss_dssp CCCCCCEEECSSSEEEEEETTEEEEE-------ETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSS
T ss_pred cccccccEECCCCcEEEEcCCcEEEE-------ECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEE
Confidence 33455789999998887753 4444 33455555666776543 23478899987 6666654
Q ss_pred ---CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcE---
Q psy2113 73 ---HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKV--- 146 (183)
Q Consensus 73 ---~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v--- 146 (183)
+.+.+||+.+++. ..+..+...+...+|+| +++.|+.+. |+.|++||..++........++...+
T Consensus 89 ~~~~~~~~~d~~~~~~-------~~l~~~~~~~~~~~~SP-dG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g 159 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQL-------ITEERIPNNTQWVTWSP-VGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNG 159 (740)
T ss_dssp CEEEEEEEEETTTTEE-------CCSSCCCTTEEEEEECS-STTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEES
T ss_pred ccceEEEEEECCCCcE-------EEcccCCCcceeeEECC-CCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecC
Confidence 5677999988763 24556778899999999 888888774 78999999988764222222333323
Q ss_pred --------------EEEEecCC-cEEEEecC
Q psy2113 147 --------------MCVNWSDY-RYIMSGGQ 162 (183)
Q Consensus 147 --------------~~~~~~~~-~~l~~~~~ 162 (183)
..+.|+|+ +.|+..+.
T Consensus 160 ~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~ 190 (740)
T 4a5s_A 160 ITDWVYEEEVFSAYSALWWSPNGTFLAYAQF 190 (740)
T ss_dssp BCCHHHHHHTSSSSBCEEECTTSSEEEEEEE
T ss_pred cccccccchhcCCCcceEECCCCCEEEEEEE
Confidence 24889976 77777653
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-09 Score=79.10 Aligned_cols=153 Identities=10% Similarity=-0.001 Sum_probs=99.0
Q ss_pred EEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCcee
Q psy2113 13 VIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIV 91 (183)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~ 91 (183)
.+|+|+|..++...-.-........+....+......++...+..+.|+|++. |+.++.++.+++||+.+++.
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~------ 114 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEE------ 114 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCE------
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcc------
Confidence 57999999887765321111111123334444444455555666788999886 88888889999999988764
Q ss_pred EEEeecCCcceEEEE--EecCCCCEEEEE----------------------eCCCeEEEEeCCCCCcceEEeccCCCcEE
Q psy2113 92 KSTFSSHKEWVQSVR--WSPIDPQLFVSA----------------------SFDNSVKLWDLRSPKVPLFDMLGHEDKVM 147 (183)
Q Consensus 92 ~~~~~~~~~~v~~~~--~~p~~~~~l~~~----------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 147 (183)
......+...+.... ++| ++.+++.. ..+..|.+||+.+++ ...+..+...+.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~ 191 (388)
T 3pe7_A 115 NVVYQVPAEWVGYGTWVANS-DCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLG 191 (388)
T ss_dssp EEEEECCTTEEEEEEEEECT-TSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEE
T ss_pred eeeeechhhcccccceeECC-CCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCc--eEEeecCCcccc
Confidence 233444444444333 478 77777642 234689999999886 445556677889
Q ss_pred EEEecC-C-cEEEEecCC------CcEEEEEecCC
Q psy2113 148 CVNWSD-Y-RYIMSGGQD------NSVRVFKTKHQ 174 (183)
Q Consensus 148 ~~~~~~-~-~~l~~~~~d------g~i~iwd~~~~ 174 (183)
.+.|+| + ..|+....+ ..|.++|+...
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (388)
T 3pe7_A 192 HPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGT 226 (388)
T ss_dssp EEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSC
T ss_pred ccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCC
Confidence 999999 6 666655543 36777776554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.5e-11 Score=92.86 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=82.9
Q ss_pred eEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCc---ceEEEEEecCCCCEEEEEeC---------CCe
Q psy2113 56 SAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE---WVQSVRWSPIDPQLFVSASF---------DNS 123 (183)
Q Consensus 56 ~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~p~~~~~l~~~~~---------dg~ 123 (183)
.++.|+|++.++..+.|+.|++||+.+++. ...+..+.. .+.+++|+| ++++|+.++. ++.
T Consensus 19 ~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~ 91 (719)
T 1z68_A 19 FFPNWISGQEYLHQSADNNIVLYNIETGQS------YTILSNRTMKSVNASNYGLSP-DRQFVYLESDYSKLWRYSYTAT 91 (719)
T ss_dssp CCCEESSSSEEEEECTTSCEEEEESSSCCE------EEEECHHHHHTTTCSEEEECT-TSSEEEEEEEEEECSSSCEEEE
T ss_pred CccEECCCCeEEEEcCCCCEEEEEcCCCcE------EEEEccccccccceeeEEECC-CCCeEEEEecCceeEEeecceE
Confidence 378999999988777899999999988764 333333332 389999999 8888888876 689
Q ss_pred EEEEeCCCCCcce-EEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 124 VKLWDLRSPKVPL-FDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 124 i~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
|++||+.+++... ..+ ...+..++|+|+ +.|+.+. |+.|++||+.+++
T Consensus 92 i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~ 141 (719)
T 1z68_A 92 YYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDP 141 (719)
T ss_dssp EEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSC
T ss_pred EEEEECCCCccccceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCC
Confidence 9999998875300 112 246888999976 6777764 7899999997765
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-08 Score=71.54 Aligned_cols=160 Identities=12% Similarity=0.009 Sum_probs=103.0
Q ss_pred eeEEEEEeecCcEEEEEE-eccCCC--------------------CcccccccCccceEEEe-ccCCCeeEEEEccCCe-
Q psy2113 9 LTLGVIFMTVGALLTLTN-IEVTSL--------------------PSFFQLILQKTPLITLK-GHKEAISAVQWTAVDE- 65 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~~~--------------------~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~- 65 (183)
...+++++|+|.++++.. -+.|.. .....+...++.+..+. ++......+++++++.
T Consensus 25 ~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l 104 (329)
T 3fvz_A 25 QVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNY 104 (329)
T ss_dssp CEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCE
T ss_pred CceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCE
Confidence 467899999999887654 211211 01111222333333332 3345788999998877
Q ss_pred EEEEeCCCeEEEEEcCCCCCccCceeEEEe---------ecCCcceEEEEEecCCCCEEEEEe-CCCeEEEEeCCCCCcc
Q psy2113 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTF---------SSHKEWVQSVRWSPIDPQLFVSAS-FDNSVKLWDLRSPKVP 135 (183)
Q Consensus 66 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---------~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~vwd~~~~~~~ 135 (183)
+++...++.|++||....... ...+ ..+-.....++++|+++.++++.+ .++.|++||. ++..
T Consensus 105 ~v~d~~~~~v~~~~~~g~~~~-----~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~- 177 (329)
T 3fvz_A 105 WVTDVALHQVFKLDPHSKEGP-----LLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKF- 177 (329)
T ss_dssp EEEETTTTEEEEECTTCSSCC-----SEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCE-
T ss_pred EEEECCCCEEEEEeCCCCeEE-----EEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCE-
Confidence 566677899999998644210 2222 234446899999996677888876 6899999994 4443
Q ss_pred eEEecc----------CCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCC
Q psy2113 136 LFDMLG----------HEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 136 ~~~~~~----------~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 175 (183)
...+.. +-..+..++++++ .++++...++.|++||..+++
T Consensus 178 ~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~ 229 (329)
T 3fvz_A 178 VTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE 229 (329)
T ss_dssp EEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc
Confidence 333322 2234899999864 666777788999999988543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.13 E-value=3.2e-10 Score=89.01 Aligned_cols=112 Identities=16% Similarity=0.249 Sum_probs=85.3
Q ss_pred CCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcc-----eEEEEEecCCCCEEEEEeCC------
Q psy2113 53 EAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW-----VQSVRWSPIDPQLFVSASFD------ 121 (183)
Q Consensus 53 ~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~-----v~~~~~~p~~~~~l~~~~~d------ 121 (183)
....++.|+|++.++..+ |+.|++||+.+++. ...+.+|... ...++|+| +++.++.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~Sp-dg~~l~~~~~~~~~~r~ 88 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNS------SVFLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRH 88 (740)
T ss_dssp CCCCCEEECSSSEEEEEE-TTEEEEEETTTCCE------EEEECTTTTTTCCSCCCEEEECT-TSSEEEEEEEEEECSSS
T ss_pred ccccccEECCCCcEEEEc-CCcEEEEECCCCce------EEEEechhhhhhcccccceEECC-CCCEEEEEECCeeeEEE
Confidence 346689999999865555 99999999988774 3345555432 24478999 88888888775
Q ss_pred ---CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 122 ---NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 122 ---g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+.+.+||+.+++. ..+..+...+...+|+|+ +.|+.+ .|+.|++||+.+++
T Consensus 89 ~~~~~~~~~d~~~~~~--~~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~ 143 (740)
T 4a5s_A 89 SYTASYDIYDLNKRQL--ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLP 143 (740)
T ss_dssp CEEEEEEEEETTTTEE--CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSC
T ss_pred ccceEEEEEECCCCcE--EEcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCc
Confidence 5677999998863 456677788999999976 667666 57899999987754
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.12 E-value=5e-09 Score=76.10 Aligned_cols=127 Identities=13% Similarity=0.129 Sum_probs=90.7
Q ss_pred eEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCc
Q psy2113 10 TLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK 86 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~ 86 (183)
...++| ++..++++. +++|++..+ ........|...+.++.+.+.+ +++++.||.+.+||+.+...
T Consensus 90 V~~l~f--d~~~L~v~~~~~l~v~dv~sl-------~~~~~~~~~~~~v~~i~~~~p~-~av~~~dG~L~v~dl~~~~~- 158 (388)
T 1xip_A 90 VIFVCF--HGDQVLVSTRNALYSLDLEEL-------SEFRTVTSFEKPVFQLKNVNNT-LVILNSVNDLSALDLRTKST- 158 (388)
T ss_dssp EEEEEE--ETTEEEEEESSEEEEEESSST-------TCEEEEEECSSCEEEEEECSSE-EEEEETTSEEEEEETTTCCE-
T ss_pred eeEEEE--CCCEEEEEcCCcEEEEEchhh-------hccCccceeecceeeEEecCCC-EEEEECCCCEEEEEccCCcc-
Confidence 567778 888888765 555544332 2233455677788888887543 88999999999999986653
Q ss_pred cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcc-eEEe------c---cCCCcEEEEEecCC-c
Q psy2113 87 KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP-LFDM------L---GHEDKVMCVNWSDY-R 155 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~------~---~~~~~v~~~~~~~~-~ 155 (183)
. . +...|+|++|+| .+ ++.|..||.+++|+....... ...+ . +|...|.+|.|.++ .
T Consensus 159 -----~-~---~~~~Vs~v~WSp-kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 159 -----K-Q---LAQNVTSFDVTN-SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp -----E-E---EEESEEEEEECS-SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred -----c-c---ccCCceEEEEcC-Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 1 1 345799999999 66 677889999999988776521 2223 2 36788999999965 5
Q ss_pred EEEE
Q psy2113 156 YIMS 159 (183)
Q Consensus 156 ~l~~ 159 (183)
++++
T Consensus 227 flv~ 230 (388)
T 1xip_A 227 FLAV 230 (388)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-07 Score=66.58 Aligned_cols=149 Identities=12% Similarity=0.080 Sum_probs=101.6
Q ss_pred eeEEEEEee-cCcEEEEEE-----eccCCCCcccccccCccceEEEec----------cCCCeeEEEEccC-Ce-EEEEe
Q psy2113 9 LTLGVIFMT-VGALLTLTN-----IEVTSLPSFFQLILQKTPLITLKG----------HKEAISAVQWTAV-DE-IITSS 70 (183)
Q Consensus 9 ~~~~~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~----------h~~~v~~~~~~~~-~~-l~s~~ 70 (183)
...+++++| ++.++.+.. +..++ ..+..+..+.. +.....+++++|+ +. +++..
T Consensus 144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~--------~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~ 215 (329)
T 3fvz_A 144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFS--------PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR 215 (329)
T ss_dssp SEEEEEECTTTCCEEEEECSSCCEEEEEC--------TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET
T ss_pred CCcEEEEeCCCCeEEEEeCCCCCeEEEEc--------CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC
Confidence 356899999 777776652 22222 23444444432 2234789999987 66 56667
Q ss_pred CCCeEEEEEcCCCCCccCceeEEEe--ecCCcceEEEEEecCCCCEEEEE-------eCCCeEEEEeCCCCCcceEEe--
Q psy2113 71 WDHTLKIWDAELGGMKKGAIVKSTF--SSHKEWVQSVRWSPIDPQLFVSA-------SFDNSVKLWDLRSPKVPLFDM-- 139 (183)
Q Consensus 71 ~d~~v~vwd~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~-------~~dg~i~vwd~~~~~~~~~~~-- 139 (183)
.++.|++||..+++. ...+ ..+...+..++++| +..+.+. ..+..|++||..+++. +..+
T Consensus 216 ~~~~I~~~~~~~G~~------~~~~~~~~~~~~~~~~~~~p--g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~-~~~~~~ 286 (329)
T 3fvz_A 216 ENGRIQCFKTDTKEF------VREIKHASFGRNVFAISYIP--GFLFAVNGKPYFGDQEPVQGFVMNFSSGEI-IDVFKP 286 (329)
T ss_dssp TTTEEEEEETTTCCE------EEEECCTTTTTCEEEEEEET--TEEEEEECCCCTTCSCCCCEEEEETTTCCE-EEEECC
T ss_pred CCCEEEEEECCCCcE------EEEEeccccCCCcceeeecC--CEEEEeCCCEEeccCCCcEEEEEEcCCCeE-EEEEcC
Confidence 889999999986554 3333 34556788899988 2233322 2345899999998875 5554
Q ss_pred -ccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 140 -LGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 140 -~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
.++...+..++++++ ..+++...++.|++|++...
T Consensus 287 ~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 287 VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 356677899999966 67788888999999998754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-07 Score=67.55 Aligned_cols=148 Identities=11% Similarity=0.049 Sum_probs=95.0
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEe-CC----CeEEEEEc
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSS-WD----HTLKIWDA 80 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~-~d----~~v~vwd~ 80 (183)
..+++|++++.++.+.. +..|+. ...+.......+...+.++++++++.++.+. .+ +.|.+||.
T Consensus 47 ~~~~~~~~~g~l~~~~~~~~~i~~~d~-------~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~ 119 (333)
T 2dg1_A 47 LEGLNFDRQGQLFLLDVFEGNIFKINP-------ETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE 119 (333)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECT-------TTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred ccCcEECCCCCEEEEECCCCEEEEEeC-------CCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence 46788999998765532 333322 2222222223466789999999888755544 44 58999998
Q ss_pred CCCCCccCceeEEEee--cCCcceEEEEEecCCCCEEEEEeC------CCeEEEEeCCCCCcceEEeccCCCcEEEEEec
Q psy2113 81 ELGGMKKGAIVKSTFS--SHKEWVQSVRWSPIDPQLFVSASF------DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 152 (183)
.+.... ..+. .+...+..+.++| +++++++... .+.|..+|..+++. ..+......+..++|+
T Consensus 120 ~~~~~~------~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~i~~~ 190 (333)
T 2dg1_A 120 NGDNLQ------DIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRTV--TPIIQNISVANGIALS 190 (333)
T ss_dssp TSCSCE------EEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCCE--EEEEEEESSEEEEEEC
T ss_pred CCCEEE------EEEccCccCCcccceEECC-CCCEEEEeccccccCCCceEEEEeCCCCEE--EEeecCCCcccceEEC
Confidence 766531 1121 2345789999999 7777776653 35677777665442 2333334467899999
Q ss_pred CC-cEE-EEecCCCcEEEEEecC
Q psy2113 153 DY-RYI-MSGGQDNSVRVFKTKH 173 (183)
Q Consensus 153 ~~-~~l-~~~~~dg~i~iwd~~~ 173 (183)
++ ..+ ++.+.++.|.+||+++
T Consensus 191 ~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 191 TDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp TTSSEEEEEEGGGTEEEEEEECT
T ss_pred CCCCEEEEEeCCCCeEEEEEecC
Confidence 76 544 5556688999999964
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4.6e-08 Score=76.53 Aligned_cols=162 Identities=11% Similarity=0.083 Sum_probs=97.0
Q ss_pred eeEEEEEeecCcEEEEEEeccCCC--CcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCe-----------
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSL--PSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHT----------- 74 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~----------- 74 (183)
...+.+|||+|..++...-....- .....+...++.+.....+ ..+..++|+|++. |+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 456889999999988654221110 0111133334333322222 2367899999876 777776655
Q ss_pred -----EEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-----CCeEEEEeCCC------CCcceEE
Q psy2113 75 -----LKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-----DNSVKLWDLRS------PKVPLFD 138 (183)
Q Consensus 75 -----v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~i~vwd~~~------~~~~~~~ 138 (183)
|++|++.++.... ........+...+..+.|+| ++++|+..+. +..|++||+.+ +......
T Consensus 205 ~~~~~v~~~~l~t~~~~~--~~v~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 281 (710)
T 2xdw_A 205 NLHQKLYYHVLGTDQSED--ILCAEFPDEPKWMGGAELSD-DGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVK 281 (710)
T ss_dssp CCCCEEEEEETTSCGGGC--EEEECCTTCTTCEEEEEECT-TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEE
T ss_pred CCCCEEEEEECCCCcccc--eEEeccCCCCeEEEEEEEcC-CCCEEEEEEEccCCCccEEEEEECcccccccCCccceEE
Confidence 9999997654211 11112223455688999999 7777776654 56899999986 4322455
Q ss_pred eccCCCcEEEEEec-CCcEEEEecC-C---CcEEEEEecCCC
Q psy2113 139 MLGHEDKVMCVNWS-DYRYIMSGGQ-D---NSVRVFKTKHQP 175 (183)
Q Consensus 139 ~~~~~~~v~~~~~~-~~~~l~~~~~-d---g~i~iwd~~~~~ 175 (183)
+..+...+... |+ ++..|+..+. + +.|.+||+.++.
T Consensus 282 l~~~~~~~~~~-~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 282 LIDNFEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred eeCCCCcEEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 55666655553 55 4555544333 3 369999987763
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-08 Score=68.61 Aligned_cols=154 Identities=10% Similarity=-0.004 Sum_probs=100.3
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeE-EEEeCCCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEI-ITSSWDHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l-~s~~~d~~v~vwd~~~~ 83 (183)
...++++.+++.++.+.. +..+.. ...............+.++++.+++.+ ++...++.|.+||....
T Consensus 109 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 109 YPEGLAVDTQGAVYVADRGNNRVVKLAA-------GSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp SEEEEEECTTCCEEEEEGGGTEEEEECT-------TCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred CCcceEECCCCCEEEEECCCCEEEEEEC-------CCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 356888999988665532 222211 111111111223346788999987775 45556789999998764
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQ 162 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~ 162 (183)
.. ......+...+..+++++ ++.++++...++.|.+||...... ......+...+..++++++ ..+++...
T Consensus 182 ~~------~~~~~~~~~~p~~i~~d~-~g~l~v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~ 253 (270)
T 1rwi_B 182 NQ------VVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRG 253 (270)
T ss_dssp CE------EECCCSSCCSEEEEEECT-TCCEEEEETTTSCEEEECTTCSCC-EECCCCSCSCEEEEEECTTCCEEEEEGG
T ss_pred ce------EeecccCCCCceEEEECC-CCCEEEEECCCCcEEEEcCCCCcc-eeeccCCCCCceeEEECCCCCEEEEECC
Confidence 42 111122335688999999 777888777788999999976543 2222233357899999854 77788888
Q ss_pred CCcEEEEEecCCCCC
Q psy2113 163 DNSVRVFKTKHQPKS 177 (183)
Q Consensus 163 dg~i~iwd~~~~~~~ 177 (183)
++.|+++++...+..
T Consensus 254 ~~~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 254 NDRVVKLTSLEHHHH 268 (270)
T ss_dssp GTEEEEECCCGGGSC
T ss_pred CCEEEEEcCCCcccc
Confidence 999999998766543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.06 E-value=6.8e-08 Score=67.07 Aligned_cols=147 Identities=16% Similarity=0.180 Sum_probs=98.9
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEe------ccCCCeeEEEEc-cCCeEEEEeC--CCeE
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLK------GHKEAISAVQWT-AVDEIITSSW--DHTL 75 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~-~~~~l~s~~~--d~~v 75 (183)
...++++++++.++.+.. +..|+. ..+.+..+. ++...+..+++. +++.++.+.. ++.|
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~--------~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i 102 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDK--------EGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 102 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECT--------TSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECC--------CCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEE
Confidence 457888999998766642 444432 133333342 244578899994 7787665553 8999
Q ss_pred EEEEcCCCCCccCceeEEEee-cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec--cCCCcEEEEEec
Q psy2113 76 KIWDAELGGMKKGAIVKSTFS-SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML--GHEDKVMCVNWS 152 (183)
Q Consensus 76 ~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~ 152 (183)
.+||. +++. ...+. .+...+..++++| +++++++...++.|.+||... +. ...+. .+...+..++++
T Consensus 103 ~~~d~-~g~~------~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~-~~~~~~~~~~~~p~~i~~~ 172 (286)
T 1q7f_A 103 QIYNQ-YGQF------VRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNG-NV-LHKFGCSKHLEFPNGVVVN 172 (286)
T ss_dssp EEECT-TSCE------EEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTS-CE-EEEEECTTTCSSEEEEEEC
T ss_pred EEECC-CCcE------EEEecCccCCCceEEEEeC-CCCEEEEECCCCEEEEEcCCC-CE-EEEeCCCCccCCcEEEEEC
Confidence 99994 3332 22332 2345689999999 788888887889999999653 32 33332 344578999999
Q ss_pred CC-cEEEEecCCCcEEEEEecC
Q psy2113 153 DY-RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 153 ~~-~~l~~~~~dg~i~iwd~~~ 173 (183)
++ ..+++...++.|++||...
T Consensus 173 ~~g~l~v~~~~~~~i~~~~~~g 194 (286)
T 1q7f_A 173 DKQEIFISDNRAHCVKVFNYEG 194 (286)
T ss_dssp SSSEEEEEEGGGTEEEEEETTC
T ss_pred CCCCEEEEECCCCEEEEEcCCC
Confidence 65 6666777789999999743
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.04 E-value=2.3e-08 Score=72.17 Aligned_cols=65 Identities=8% Similarity=0.147 Sum_probs=49.2
Q ss_pred EEEecCCCCEEEEEeC-----------CCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEec
Q psy2113 105 VRWSPIDPQLFVSASF-----------DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 105 ~~~~p~~~~~l~~~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~ 172 (183)
++++| ++..++.+.. ++.|.+||+.+.+. +..+..+. +..++|+|+ ++|++++. +.|.+||..
T Consensus 259 ~a~~~-dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 259 VGLHR-ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEET-TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred EEEec-CCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 56777 4444444322 34899999999876 66666665 899999965 78888876 999999999
Q ss_pred CC
Q psy2113 173 HQ 174 (183)
Q Consensus 173 ~~ 174 (183)
++
T Consensus 334 t~ 335 (361)
T 2oiz_A 334 QP 335 (361)
T ss_dssp SS
T ss_pred CC
Confidence 87
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.01 E-value=3e-08 Score=77.42 Aligned_cols=160 Identities=8% Similarity=-0.094 Sum_probs=96.2
Q ss_pred eeEEEEEeecCcEEEEEEeccCC--CCcccccccCccceEEEeccCCCe--eEEEEccCCe-EEEEeCCCe---------
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTS--LPSFFQLILQKTPLITLKGHKEAI--SAVQWTAVDE-IITSSWDHT--------- 74 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v--~~~~~~~~~~-l~s~~~d~~--------- 74 (183)
...+.+|||+|..++...-..-. ......+...++.+. ..+...+ ..++|+|+++ |+.++.+..
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~ 199 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERP 199 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence 46788999999998854321110 001111222232220 1122222 6889999886 777777665
Q ss_pred ----EEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC----eEEEEeCCCCCcceEEeccCCCcE
Q psy2113 75 ----LKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN----SVKLWDLRSPKVPLFDMLGHEDKV 146 (183)
Q Consensus 75 ----v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~v 146 (183)
|++|++.++.... .+......+...+..+.|+| ++++++..+.++ .|++||..++. ...+..+...+
T Consensus 200 ~~~~v~~~~l~t~~~~~--~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~l~~~~~~~~~--~~~l~~~~~~~ 274 (695)
T 2bkl_A 200 GYTTIRYHTLGTEPSKD--TVVHERTGDPTTFLQSDLSR-DGKYLFVYILRGWSENDVYWKRPGEKD--FRLLVKGVGAK 274 (695)
T ss_dssp GGCEEEEEETTSCGGGC--EEEECCCCCTTCEEEEEECT-TSCCEEEEEEETTTEEEEEEECTTCSS--CEEEEECSSCC
T ss_pred CCCEEEEEECCCCchhc--eEEEecCCCCEEEEEEEECC-CCCEEEEEEeCCCCceEEEEEcCCCCc--eEEeecCCCce
Confidence 9999998765311 11222234556789999999 777777666555 67777665544 34455555566
Q ss_pred EEEEecCCcEEEEec---CCCcEEEEEecCCC
Q psy2113 147 MCVNWSDYRYIMSGG---QDNSVRVFKTKHQP 175 (183)
Q Consensus 147 ~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~ 175 (183)
....|.++.+++... .++.|.+||+.++.
T Consensus 275 ~~~~~~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 275 YEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEEEETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEEecCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 666676666334433 25789999987654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-08 Score=74.15 Aligned_cols=129 Identities=9% Similarity=-0.030 Sum_probs=87.1
Q ss_pred ccCccceEEEeccCCCeeE-----EEEccCCe-EEEEeC-CC--eEEEEEcCCCCCccCceeEEEeecCCcceEEEEEec
Q psy2113 39 ILQKTPLITLKGHKEAISA-----VQWTAVDE-IITSSW-DH--TLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP 109 (183)
Q Consensus 39 ~~~~~~~~~~~~h~~~v~~-----~~~~~~~~-l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p 109 (183)
...+..+..+..|...... .+|+|+++ |+.++. ++ .+.+||+.+++. ......+...+..+.|+|
T Consensus 17 ~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~------~~lt~~~~~~~~~~~~sp 90 (388)
T 3pe7_A 17 ASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVA------TQLTEGRGDNTFGGFLSP 90 (388)
T ss_dssp TTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEE------EECCCSSCBCSSSCEECT
T ss_pred CCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCce------EEeeeCCCCCccceEEcC
Confidence 3455566677777665555 88999887 666665 66 488888877653 223334444455678999
Q ss_pred CCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEe--cCC-cEEEE----------------------ecCCC
Q psy2113 110 IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW--SDY-RYIMS----------------------GGQDN 164 (183)
Q Consensus 110 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~--~~~-~~l~~----------------------~~~dg 164 (183)
+++.|+.++.++.+++||+.+++. ......+...+....| +++ ..++. ...+.
T Consensus 91 -dg~~l~~~~~~~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 91 -DDDALFYVKDGRNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp -TSSEEEEEETTTEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred -CCCEEEEEeCCCeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcc
Confidence 888999999899999999998875 3344445555544444 554 55553 22346
Q ss_pred cEEEEEecCCC
Q psy2113 165 SVRVFKTKHQP 175 (183)
Q Consensus 165 ~i~iwd~~~~~ 175 (183)
.|.+||+.+++
T Consensus 169 ~l~~~d~~~g~ 179 (388)
T 3pe7_A 169 RLMRVDLKTGE 179 (388)
T ss_dssp EEEEEETTTCC
T ss_pred eEEEEECCCCc
Confidence 79999988764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.98 E-value=2.9e-07 Score=64.56 Aligned_cols=157 Identities=10% Similarity=0.105 Sum_probs=101.0
Q ss_pred eEEEEEeecCcEEEEEEe-----------------ccCCCCcccccccCccceEEEeccCCCeeEEEEc----cCCe-E-
Q psy2113 10 TLGVIFMTVGALLTLTNI-----------------EVTSLPSFFQLILQKTPLITLKGHKEAISAVQWT----AVDE-I- 66 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~-l- 66 (183)
..++++.++|.+..+..- .++.+ +. ..+ ...+..+......++|+ +++. +
T Consensus 119 ~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~-~g~-~~~~~~~~~~~~~i~~~~~~d~dg~~l~ 191 (314)
T 1pjx_A 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCF-----TT-DGQ-MIQVDTAFQFPNGIAVRHMNDGRPYQLI 191 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEE-----CT-TSC-EEEEEEEESSEEEEEEEECTTSCEEEEE
T ss_pred CcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEE-----CC-CCC-EEEeccCCCCcceEEEecccCCCCCEEE
Confidence 568889999987765431 11111 11 122 22233344556889999 8874 4
Q ss_pred EEEeCCCeEEEEEcC-CCCCccCceeEEEeecCC-cceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCC
Q psy2113 67 ITSSWDHTLKIWDAE-LGGMKKGAIVKSTFSSHK-EWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHED 144 (183)
Q Consensus 67 ~s~~~d~~v~vwd~~-~~~~~~~~~~~~~~~~~~-~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 144 (183)
++...++.|.+||.. .+.... ......+..+. ..+..+++++ +++++++...++.|.+||.++++. ...+..+..
T Consensus 192 v~~~~~~~i~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~i~~d~-~G~l~v~~~~~~~i~~~d~~~g~~-~~~~~~~~~ 268 (314)
T 1pjx_A 192 VAETPTKKLWSYDIKGPAKIEN-KKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEVFGPDGGQP-KMRIRCPFE 268 (314)
T ss_dssp EEETTTTEEEEEEEEETTEEEE-EEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEEECTTCBSC-SEEEECSSS
T ss_pred EEECCCCeEEEEECCCCCcccc-ceEEEECCCCCCCCCCceEECC-CCCEEEEEcCCCEEEEEcCCCCcE-eEEEeCCCC
Confidence 445578999999976 222110 01122233333 5678899999 788888887889999999986654 445555667
Q ss_pred cEEEEEecCC-c-EEEEecCCCcEEEEEecCCCC
Q psy2113 145 KVMCVNWSDY-R-YIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 145 ~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.+.+++|+++ . .+++...++.|..|++.....
T Consensus 269 ~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g~ 302 (314)
T 1pjx_A 269 KPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK 302 (314)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred CceeEEECCCCCEEEEEeCCCCeEEEEeCCCCCc
Confidence 8999999865 5 445556678999999876443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-07 Score=67.18 Aligned_cols=124 Identities=10% Similarity=0.105 Sum_probs=85.8
Q ss_pred ccceEEEeccCCCeeEEEEccCCeEE-EEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC
Q psy2113 42 KTPLITLKGHKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 42 ~~~~~~~~~h~~~v~~~~~~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
......+..+...+.+++|++++.++ ++..++.|.+||..+++. ......+...+.+++++| +++++++...
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~------~~~~~~~~~~~~~i~~~~-dg~l~v~~~~ 106 (333)
T 2dg1_A 34 AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI------KRPFVSHKANPAAIKIHK-DGRLFVCYLG 106 (333)
T ss_dssp CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE------EEEEECSSSSEEEEEECT-TSCEEEEECT
T ss_pred cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE------EEEeeCCCCCcceEEECC-CCcEEEEeCC
Confidence 34455666777788999999888754 677889999999876653 222224567899999999 7888887766
Q ss_pred C----CeEEEEeCCCCCcceEEec--cCCCcEEEEEecCC-cEEEEecC------CCcEEEEEecC
Q psy2113 121 D----NSVKLWDLRSPKVPLFDML--GHEDKVMCVNWSDY-RYIMSGGQ------DNSVRVFKTKH 173 (183)
Q Consensus 121 d----g~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~-~~l~~~~~------dg~i~iwd~~~ 173 (183)
+ +.|.+||..+... ...+. .+...+..++++++ ..+++... .+.|..+|...
T Consensus 107 ~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~ 171 (333)
T 2dg1_A 107 DFKSTGGIFAATENGDNL-QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF 171 (333)
T ss_dssp TSSSCCEEEEECTTSCSC-EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS
T ss_pred CCCCCceEEEEeCCCCEE-EEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCC
Confidence 6 6899999987764 22222 24457899999976 55554443 24555555443
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.6e-07 Score=63.80 Aligned_cols=152 Identities=13% Similarity=0.041 Sum_probs=97.1
Q ss_pred eeEEEEEeecCc-EEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEe-CCCeEEEEEcCCCCCc
Q psy2113 9 LTLGVIFMTVGA-LLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSS-WDHTLKIWDAELGGMK 86 (183)
Q Consensus 9 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~ 86 (183)
...+.+|+|++. ++.+.. ....+..+ +.... ...+..+...+.++++++++.++.+. .++.|.+||..+++..
T Consensus 29 ~~eg~~~d~~g~~l~~~~~-~~~~i~~~--~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~ 103 (296)
T 3e5z_A 29 WTEGPVYVPARSAVIFSDV-RQNRTWAW--SDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWE 103 (296)
T ss_dssp SEEEEEEEGGGTEEEEEEG-GGTEEEEE--ETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEE
T ss_pred cccCCeEeCCCCEEEEEeC-CCCEEEEE--ECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEE
Confidence 456899999998 444432 11111111 11222 45666677889999999988865554 4689999998766531
Q ss_pred cCceeEEEeec-CCcceEEEEEecCCCCEEEE----Ee-------------CCCeEEEEeCCCCCcceEEeccCCCcEEE
Q psy2113 87 KGAIVKSTFSS-HKEWVQSVRWSPIDPQLFVS----AS-------------FDNSVKLWDLRSPKVPLFDMLGHEDKVMC 148 (183)
Q Consensus 87 ~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~----~~-------------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~ 148 (183)
. ....... ....+..++++| +++++++ |. ..+.|..++.. ++ ......+...+..
T Consensus 104 ~---~~~~~~~~~~~~~~~i~~d~-~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~g 176 (296)
T 3e5z_A 104 S---IADSFEGKKLNSPNDVCLAP-DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT--LSAPIRDRVKPNG 176 (296)
T ss_dssp E---EECEETTEECCCCCCEEECT-TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC--EEEEECCCSSEEE
T ss_pred E---EeeccCCCCCCCCCCEEECC-CCCEEEECCccccccccccccccccCCCcEEEEECCC-CC--EEEeecCCCCCcc
Confidence 1 0000111 123467899999 8888887 33 13466666665 33 4445566677899
Q ss_pred EEecCC-cEEEEecCCCcEEEEEec
Q psy2113 149 VNWSDY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 149 ~~~~~~-~~l~~~~~dg~i~iwd~~ 172 (183)
++|+++ ..+++.+.++.|.+||+.
T Consensus 177 i~~s~dg~~lv~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 177 LAFLPSGNLLVSDTGDNATHRYCLN 201 (296)
T ss_dssp EEECTTSCEEEEETTTTEEEEEEEC
T ss_pred EEECCCCCEEEEeCCCCeEEEEEEC
Confidence 999965 666778888999999987
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-07 Score=65.35 Aligned_cols=122 Identities=10% Similarity=0.088 Sum_probs=81.5
Q ss_pred eEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC-CCC-ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 45 LITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL-GGM-KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~-~~~-~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
+..+..+......++|+|++. +++.+.++.|.+|++.. +.. .. ...+..+...+..+++++ +++++++. +
T Consensus 164 ~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~----~~~~~~~~~~p~~i~~d~-~G~l~v~~--~ 236 (296)
T 3e5z_A 164 LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ----GVHFTVEPGKTDGLRVDA-GGLIWASA--G 236 (296)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE----EEEECCSSSCCCSEEEBT-TSCEEEEE--T
T ss_pred EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC----CeEeeCCCCCCCeEEECC-CCCEEEEc--C
Confidence 344556667789999999876 66666789999999872 221 00 112233455677899999 78777666 7
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEec-CC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+.|.+||.. ++. ...+..+.. +.+++|. ++ +.|++++.++ +.-+++++.+.+
T Consensus 237 ~~v~~~~~~-g~~-~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~~~~ 290 (296)
T 3e5z_A 237 DGVHVLTPD-GDE-LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNVRGLE 290 (296)
T ss_dssp TEEEEECTT-SCE-EEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSCCBCC
T ss_pred CeEEEECCC-CCE-EEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccccccc
Confidence 899999987 443 555666666 8999995 55 6777777653 444455554433
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-07 Score=65.07 Aligned_cols=150 Identities=8% Similarity=0.031 Sum_probs=96.1
Q ss_pred eeEEEEEeecCcEEE-EEE----eccCCCCcccccccCccceEEE-eccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCC
Q psy2113 9 LTLGVIFMTVGALLT-LTN----IEVTSLPSFFQLILQKTPLITL-KGHKEAISAVQWTAVDEIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~ 82 (183)
...++++++++.++. +.. +..++. .... ...+ ..+...+.++++.+++.++.+..++.|.+||...
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~-------~~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~ 96 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLAT-------GSTG-TTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGS 96 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-------------EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecC-------CCcc-cceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCC
Confidence 567889999998666 311 333321 1111 1111 2233567899999887766555588999999875
Q ss_pred CCCccCceeEEEee-cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 83 GGMKKGAIVKSTFS-SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 83 ~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
... ..+. .....+..++++| +++++++...++.|.+|+..+... ..........+..++++++ ..+++.
T Consensus 97 ~~~-------~~~~~~~~~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~ 167 (270)
T 1rwi_B 97 NNQ-------TVLPFDGLNYPEGLAVDT-QGAVYVADRGNNRVVKLAAGSKTQ-TVLPFTGLNDPDGVAVDNSGNVYVTD 167 (270)
T ss_dssp SCC-------EECCCCSCSSEEEEEECT-TCCEEEEEGGGTEEEEECTTCCSC-EECCCCSCCSCCCEEECTTCCEEEEE
T ss_pred ceE-------eeeecCCcCCCcceEECC-CCCEEEEECCCCEEEEEECCCcee-EeeccccCCCceeEEEeCCCCEEEEE
Confidence 442 1121 2235689999999 778888877788999998765443 2222233346788999864 666666
Q ss_pred cCCCcEEEEEecCCC
Q psy2113 161 GQDNSVRVFKTKHQP 175 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~ 175 (183)
..++.|.+||.....
T Consensus 168 ~~~~~i~~~~~~~~~ 182 (270)
T 1rwi_B 168 TDNNRVVKLEAESNN 182 (270)
T ss_dssp GGGTEEEEECTTTCC
T ss_pred CCCCEEEEEecCCCc
Confidence 678899999977643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-08 Score=78.17 Aligned_cols=115 Identities=10% Similarity=0.090 Sum_probs=78.4
Q ss_pred cCCCeeEEEEccCCe-EEEEeC-CC----eEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCe-
Q psy2113 51 HKEAISAVQWTAVDE-IITSSW-DH----TLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS- 123 (183)
Q Consensus 51 h~~~v~~~~~~~~~~-l~s~~~-d~----~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~- 123 (183)
|...+..++|+|+++ |+.++. .| .|++||+.+++.. ... .....+..++|+| +++.|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~------~~~-~~~~~~~~~~wsp-Dg~~l~~~~~~~~~ 194 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKEL------PDV-LERVKFSCMAWTH-DGKGMFYNAYPQQD 194 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEE------EEE-EEEECSCCEEECT-TSSEEEEEECCCCS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC------ccc-ccCcccceEEEEe-CCCEEEEEEECCcc
Confidence 334688999999987 554433 22 8999999887642 111 1122367799999 8888888877665
Q ss_pred ---------------EEEEeCCCCCcc---eEEeccCCCcEEEEEecCC-cEEEEecC-----CCcEEEEEecC
Q psy2113 124 ---------------VKLWDLRSPKVP---LFDMLGHEDKVMCVNWSDY-RYIMSGGQ-----DNSVRVFKTKH 173 (183)
Q Consensus 124 ---------------i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~-~~l~~~~~-----dg~i~iwd~~~ 173 (183)
|++|++.++... +.....+...+..+.|+|+ ++|+..+. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 999999876531 2222334556789999966 67766554 56899999986
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.5e-09 Score=75.20 Aligned_cols=155 Identities=9% Similarity=-0.008 Sum_probs=90.5
Q ss_pred EEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCC-eeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccC
Q psy2113 11 LGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEA-ISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKG 88 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~ 88 (183)
...+|+|+|..++...-.-........+....+ ...+..+... ...+.|+|++. |+.++.++.+++||+.+++.
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~--- 114 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-AVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE--- 114 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-EEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE---
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-EEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc---
Confidence 456799999987765422111001111222222 2333333333 33478999876 77888888999999987653
Q ss_pred ceeEEEeecCCcceEE-------------------EEEecCCCCEEEEE-----eCCCeEEEEeCCCCCcceEEeccCCC
Q psy2113 89 AIVKSTFSSHKEWVQS-------------------VRWSPIDPQLFVSA-----SFDNSVKLWDLRSPKVPLFDMLGHED 144 (183)
Q Consensus 89 ~~~~~~~~~~~~~v~~-------------------~~~~p~~~~~l~~~-----~~dg~i~vwd~~~~~~~~~~~~~~~~ 144 (183)
......+...... +.++| +++.++.. ..+..|++||+.+++. ..+..+..
T Consensus 115 ---~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~~~l~~~d~~~g~~--~~~~~~~~ 188 (396)
T 3c5m_A 115 ---QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQP-LTSWEKFAEFYHTNPTCRLIKVDIETGEL--EVIHQDTA 188 (396)
T ss_dssp ---EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCC-CCSHHHHHHHHHTCCCEEEEEEETTTCCE--EEEEEESS
T ss_pred ---EEEEecccccCCCCCEEEeccCCccccccccccccCC-CCcceeeeeeccCCCcceEEEEECCCCcE--EeeccCCc
Confidence 2222223222222 34566 55544433 3566899999988764 33445667
Q ss_pred cEEEEEecC-C-cEEEEecCC------CcEEEEEecCCC
Q psy2113 145 KVMCVNWSD-Y-RYIMSGGQD------NSVRVFKTKHQP 175 (183)
Q Consensus 145 ~v~~~~~~~-~-~~l~~~~~d------g~i~iwd~~~~~ 175 (183)
.+..+.|+| + ..|+..+.+ ..|.+||+..++
T Consensus 189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~ 227 (396)
T 3c5m_A 189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN 227 (396)
T ss_dssp CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC
T ss_pred ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc
Confidence 889999998 4 555554433 368888876543
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-07 Score=65.47 Aligned_cols=146 Identities=10% Similarity=0.021 Sum_probs=86.4
Q ss_pred eEEEEEeecCcEEEEEEecc-C-----------------------CCCcccccccCccceEEEeccCCCeeEEEEccCCe
Q psy2113 10 TLGVIFMTVGALLTLTNIEV-T-----------------------SLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE 65 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~-~-----------------------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 65 (183)
..+++|+|+|..++...... . ....+..+...++.+..+.. . .+..+.|+|++.
T Consensus 106 ~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg~ 183 (347)
T 2gop_A 106 IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDKI 183 (347)
T ss_dssp EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTEE
T ss_pred ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCeE
Confidence 56789999999877654210 0 00001112223333234444 3 788999999884
Q ss_pred EEEEeCCC-------eEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC--------CeEEEEeCC
Q psy2113 66 IITSSWDH-------TLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD--------NSVKLWDLR 130 (183)
Q Consensus 66 l~s~~~d~-------~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--------g~i~vwd~~ 130 (183)
++++..+. ...||.+.+++ ...+..+ ..+..+ +| +++.++.++.+ ..|.+||
T Consensus 184 ~~~~~~~~~~~~~~~~~~l~~~d~~~-------~~~l~~~-~~~~~~--sp-dg~~l~~~~~~~~~~~~~~~~l~~~d-- 250 (347)
T 2gop_A 184 VVNVPHREIIPQYFKFWDIYIWEDGK-------EEKMFEK-VSFYAV--DS-DGERILLYGKPEKKYMSEHNKLYIYD-- 250 (347)
T ss_dssp EEEEECCCSSCCSSCCEEEEEEETTE-------EEEEEEE-ESEEEE--EE-CSSCEEEEECCSSSCCCSSCEEEEEC--
T ss_pred EEEEecccccccccccccEEEeCCCc-------eEEeccC-cceeeE--CC-CCCEEEEEEccccCCccccceEEEEC--
Confidence 44454432 34555544322 2233333 445554 89 77777666643 4788888
Q ss_pred CCCcceEEeccCCCcEEE-EEecCCcEEEEecCCCcEEEEEecC
Q psy2113 131 SPKVPLFDMLGHEDKVMC-VNWSDYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~-~~~~~~~~l~~~~~dg~i~iwd~~~ 173 (183)
+++. ......+...+.. +.|+ +.++++++.++.+++| +.+
T Consensus 251 ~~~~-~~l~~~~~~~~~~~~~~s-dg~~~~~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 251 GKEV-MGILDEVDRGVGQAKIKD-GKVYFTLFEEGSVNLY-IWD 291 (347)
T ss_dssp SSCE-EESSTTCCSEEEEEEEET-TEEEEEEEETTEEEEE-EES
T ss_pred CCce-EeccccCCcccCCccEEc-CcEEEEEecCCcEEEE-EcC
Confidence 4442 3344556677886 8999 5588889999999999 873
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.2e-07 Score=66.02 Aligned_cols=151 Identities=8% Similarity=0.008 Sum_probs=100.1
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccC-CCeeEEEEccCCe-EEEEeC-CCeEEEEEcCCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHK-EAISAVQWTAVDE-IITSSW-DHTLKIWDAELGGM 85 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~-l~s~~~-d~~v~vwd~~~~~~ 85 (183)
...++++.|+|.+++..+-.+.. .+. +++.+..+..+. ..+.++.+.+++. +++.+. ++.+..+|.. ++.
T Consensus 38 ~~~~~~~~pdG~ilvs~~~~V~~-----~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~ 110 (276)
T 3no2_A 38 ECNSVAATKAGEILFSYSKGAKM-----ITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEV 110 (276)
T ss_dssp CCCEEEECTTSCEEEECBSEEEE-----ECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCE
T ss_pred CCcCeEECCCCCEEEeCCCCEEE-----ECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCE
Confidence 35677899999988843311111 122 567777777653 4688888888877 555555 6777777753 332
Q ss_pred ccCceeEEEee------cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcEEE
Q psy2113 86 KKGAIVKSTFS------SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYIM 158 (183)
Q Consensus 86 ~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l~ 158 (183)
...+. .+......++..+ +++++++...++.|..||.. ++. +..+... ..+..+...+ +..++
T Consensus 111 ------l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~-~w~~~~~-~~~~~~~~~~~g~~~v 180 (276)
T 3no2_A 111 ------LSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQL-LNSVKLS-GTPFSSAFLDNGDCLV 180 (276)
T ss_dssp ------EEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCE-EEEEECS-SCCCEEEECTTSCEEE
T ss_pred ------EEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CCE-EEEEECC-CCccceeEcCCCCEEE
Confidence 22221 1222345567788 88899999999999999998 765 5555443 3445566664 47888
Q ss_pred EecCCCcEEEEEecCCCC
Q psy2113 159 SGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~~ 176 (183)
++..++.|..+|..+++.
T Consensus 181 ~~~~~~~v~~~d~~tG~~ 198 (276)
T 3no2_A 181 ACGDAHCFVQLNLESNRI 198 (276)
T ss_dssp ECBTTSEEEEECTTTCCE
T ss_pred EeCCCCeEEEEeCcCCcE
Confidence 888888899999887654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.9e-08 Score=78.56 Aligned_cols=115 Identities=11% Similarity=0.161 Sum_probs=77.1
Q ss_pred cCCCeeEEEEccCCe-EE-----EEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCe-
Q psy2113 51 HKEAISAVQWTAVDE-II-----TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS- 123 (183)
Q Consensus 51 h~~~v~~~~~~~~~~-l~-----s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~- 123 (183)
|...+.+++|+|+|+ |+ .|+.+..|++||+.+++... ...+.. .....++|+| +++.|+.++.|..
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~----~~~~~~--~~~~~~~wsp-Dg~~l~~~~~d~~~ 191 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK----VDVIEG--GKYATPKWTP-DSKGFYYEWLPTDP 191 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS----SCCBSC--CTTCCCEECT-TSSEEEEEECCCCT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC----CcccCc--ccccceEEec-CCCEEEEEEecCCC
Confidence 444688999999987 44 23345789999999876420 001111 1126789999 8888888887765
Q ss_pred ------------EEEEeCCCCCc---ceEEeccCCCcEEEEEecCC-cEEEEecCCC----cEEEEEec
Q psy2113 124 ------------VKLWDLRSPKV---PLFDMLGHEDKVMCVNWSDY-RYIMSGGQDN----SVRVFKTK 172 (183)
Q Consensus 124 ------------i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg----~i~iwd~~ 172 (183)
|++|++.++.. .+.....+...+..+.|+|+ ++|+..+.++ .|.+||..
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~ 260 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPG 260 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTT
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCC
Confidence 99999987752 12233345567889999965 6777666555 56666543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-06 Score=60.17 Aligned_cols=149 Identities=11% Similarity=0.098 Sum_probs=91.1
Q ss_pred eeEEEEEeecCcEEEEEEeccCC-----CC--cccccccCccceEEEeccCCCeeEEEEccCCe-E-EEEeCCCeEEEEE
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTS-----LP--SFFQLILQKTPLITLKGHKEAISAVQWTAVDE-I-ITSSWDHTLKIWD 79 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd 79 (183)
...+++++|+|.+.....-.... .. ..+...... .+..+..+....+.++|+|++. | ++.+.++.|.+|+
T Consensus 99 ~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~ 177 (297)
T 3g4e_A 99 RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFD 177 (297)
T ss_dssp EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEe
Confidence 35678899999876654211000 00 011011111 2222333445568999998875 4 5667789999999
Q ss_pred cC--CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CC-c
Q psy2113 80 AE--LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DY-R 155 (183)
Q Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~-~ 155 (183)
+. ++.... ......+..+...+..+++.+ ++++.++....+.|..||..+++. ...+..+...+++++|. |+ +
T Consensus 178 ~d~~~G~~~~-~~~~~~~~~~~~~p~g~~~d~-~G~lwva~~~~~~v~~~d~~tG~~-~~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 178 YDLQTGQISN-RRSVYKLEKEEQIPDGMCIDA-EGKLWVACYNGGRVIRLDPVTGKR-LQTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp ECTTTCCEEE-EEEEEECCGGGCEEEEEEEBT-TSCEEEEEETTTEEEEECTTTCCE-EEEEECSSSBEEEEEEESGGGC
T ss_pred ccCCCCcccC-cEEEEECCCCCCCCCeeEECC-CCCEEEEEcCCCEEEEEcCCCceE-EEEEECCCCCceEEEEeCCCCC
Confidence 74 333211 111122233445678899999 788888888888999999998875 56666666789999998 54 4
Q ss_pred EE-EEec
Q psy2113 156 YI-MSGG 161 (183)
Q Consensus 156 ~l-~~~~ 161 (183)
.| ++..
T Consensus 255 ~L~vt~~ 261 (297)
T 3g4e_A 255 EMYVTCA 261 (297)
T ss_dssp EEEEEEB
T ss_pred EEEEEcC
Confidence 44 4443
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.5e-07 Score=70.44 Aligned_cols=162 Identities=10% Similarity=-0.015 Sum_probs=92.4
Q ss_pred eeEEEEEeecCcEEEEEEeccCC--CCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCe------------
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTS--LPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHT------------ 74 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~------------ 74 (183)
...+.+|+|+|..++...-.... ......+...++.+.. ..+...+..++|+|+..|+.++.++.
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~ 242 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYN 242 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTTSEEEEEECCCC--------CCCC
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECCCEEEEEEecCcccccccccCCCC
Confidence 45678999999998875422111 0011112233333221 11222235789998844776665543
Q ss_pred --EEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC-----eEEEEeCCCCCcc-eEEeccCCCcE
Q psy2113 75 --LKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN-----SVKLWDLRSPKVP-LFDMLGHEDKV 146 (183)
Q Consensus 75 --v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~vwd~~~~~~~-~~~~~~~~~~v 146 (183)
|++|++.+..... ........+...+..+.|+| ++++|+..+.++ .|++||+.++... ...+..+...+
T Consensus 243 ~~v~~~~lgt~~~~~--~lv~~~~~~~~~~~~~~~Sp-DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 319 (741)
T 1yr2_A 243 QTVWLHRLGTPQSAD--QPVFATPELPKRGHGASVSS-DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ 319 (741)
T ss_dssp CEEEEEETTSCGGGC--EEEECCTTCTTCEEEEEECT-TSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC
T ss_pred CEEEEEECCCCchhC--EEEeccCCCCeEEEEEEECC-CCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce
Confidence 8899987654211 11111222334588999999 787777766543 8999999876211 23444444444
Q ss_pred EEEEecCCcEEEEecC----CCcEEEEEecCC
Q psy2113 147 MCVNWSDYRYIMSGGQ----DNSVRVFKTKHQ 174 (183)
Q Consensus 147 ~~~~~~~~~~l~~~~~----dg~i~iwd~~~~ 174 (183)
....+.+++.|+..+. ++.|.+||+.++
T Consensus 320 ~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 320 WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 4444445566655554 345999998764
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-07 Score=65.80 Aligned_cols=143 Identities=13% Similarity=0.178 Sum_probs=80.3
Q ss_pred EEEEEeecCcEEEEEEecc--CCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeC----------------
Q psy2113 11 LGVIFMTVGALLTLTNIEV--TSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSW---------------- 71 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~---------------- 71 (183)
...+|+|+|..++...... ........+...++... +..+.. +..+.|+|++. |+.++.
T Consensus 62 ~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~ 139 (347)
T 2gop_A 62 TMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA 139 (347)
T ss_dssp EEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred CCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence 4578999999887654321 00001111222333333 333334 89999999876 665543
Q ss_pred -----------CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC-------eEEEEeCCCCC
Q psy2113 72 -----------DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN-------SVKLWDLRSPK 133 (183)
Q Consensus 72 -----------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-------~i~vwd~~~~~ 133 (183)
...|++||+.+++. ...+.. . .+..+.|+| ++ +++++..++ ...+|.+.+++
T Consensus 140 ~~~g~~~~~~~~~~l~~~d~~~~~~------~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~ 209 (347)
T 2gop_A 140 WFDDLGFFDGEKTTFWIFDTESEEV------IEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGK 209 (347)
T ss_dssp C---------CEEEEEEEETTTTEE------EEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTE
T ss_pred eecCcccccCccceEEEEECCCCeE------EeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCc
Confidence 25788999876542 123333 3 688999999 77 777775542 33444333433
Q ss_pred cceEEeccCCCcEEEEEecC-CcEEEEecCC--------CcEEEEE
Q psy2113 134 VPLFDMLGHEDKVMCVNWSD-YRYIMSGGQD--------NSVRVFK 170 (183)
Q Consensus 134 ~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~d--------g~i~iwd 170 (183)
...+..+ ..+..+ +| ++.|+.++.+ ..|.+||
T Consensus 210 --~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d 250 (347)
T 2gop_A 210 --EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD 250 (347)
T ss_dssp --EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC
T ss_pred --eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC
Confidence 3333333 455544 64 4666655543 3677777
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.8e-06 Score=60.40 Aligned_cols=150 Identities=7% Similarity=-0.103 Sum_probs=96.7
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccC-----CCeeEEEEccCCeEEEEe--CCCeEE
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHK-----EAISAVQWTAVDEIITSS--WDHTLK 76 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~l~s~~--~d~~v~ 76 (183)
....++++++++.++.... +.++ +....+....+.... .....+++ .+++++.+. .++.|.
T Consensus 84 ~~p~~i~~~~~g~lyv~~~~~~~v~~i-------D~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~ 155 (328)
T 3dsm_A 84 TSPRYIHFLSDEKAYVTQIWDYRIFII-------NPKTYEITGYIECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRIL 155 (328)
T ss_dssp SSEEEEEEEETTEEEEEEBSCSEEEEE-------ETTTTEEEEEEECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEE
T ss_pred CCCcEEEEeCCCeEEEEECCCCeEEEE-------ECCCCeEEEEEEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEE
Confidence 3456788888885544441 2222 333444444454332 14557777 566755554 489999
Q ss_pred EEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC----------CeEEEEeCCCCCcceEEecc-CCCc
Q psy2113 77 IWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD----------NSVKLWDLRSPKVPLFDMLG-HEDK 145 (183)
Q Consensus 77 vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~-~~~~ 145 (183)
++|..+.+. ...+.. ......+.++| ++++++++..+ +.|.++|..+.+. ...+.. ....
T Consensus 156 viD~~t~~~------~~~i~~-g~~p~~i~~~~-dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v-~~~~~~~~g~~ 226 (328)
T 3dsm_A 156 KIDTETDKV------VDELTI-GIQPTSLVMDK-YNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTV-EKQFKFKLGDW 226 (328)
T ss_dssp EEETTTTEE------EEEEEC-SSCBCCCEECT-TSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEE-EEEEECCTTCC
T ss_pred EEECCCCeE------EEEEEc-CCCccceEEcC-CCCEEEEECCCccCCccccCCceEEEEECCCCeE-EEEEecCCCCC
Confidence 999987664 333332 23456788999 78777777654 7899999988764 333332 1246
Q ss_pred EEEEEecC-CcEEEEecCCCcEEEEEecCCCC
Q psy2113 146 VMCVNWSD-YRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 146 v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+..++++| ++.++++.. .|.+||+.+++.
T Consensus 227 p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 227 PSEVQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp CEEEEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred ceeEEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 79999996 477776654 899999987664
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.76 E-value=6e-07 Score=62.42 Aligned_cols=127 Identities=16% Similarity=0.046 Sum_probs=90.2
Q ss_pred cccCccceEEEeccC-CCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecC-CcceEEEEEecCCCCEE
Q psy2113 38 LILQKTPLITLKGHK-EAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH-KEWVQSVRWSPIDPQLF 115 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~-~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~p~~~~~l 115 (183)
+..+++.+.++..+. ..+.++.+.|++.++. +.++.|..||. +++. +..+..+ ...+.++.+.| +++.+
T Consensus 21 d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~------~W~~~~~~~~~~~~~~~~~-dG~~l 91 (276)
T 3no2_A 21 NKDTKEIVWEYPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGRE------LWNIAAPAGCEMQTARILP-DGNAL 91 (276)
T ss_dssp ETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCE------EEEEECCTTCEEEEEEECT-TSCEE
T ss_pred ECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCE------EEEEcCCCCccccccEECC-CCCEE
Confidence 444777788887766 4788999999988666 56788999998 5554 5556544 35788899999 88888
Q ss_pred EEEeC-CCeEEEEeCCCCCcceEEec------cCCCcEEEEEecC-CcEEEEecCCCcEEEEEecCCCC
Q psy2113 116 VSASF-DNSVKLWDLRSPKVPLFDML------GHEDKVMCVNWSD-YRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 116 ~~~~~-dg~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
++.+. ++.+..+|. +++. +..+. .+......+++.+ ++++++...++.|..||.+ ++.
T Consensus 92 v~~~~~~~~v~~vd~-~Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 92 VAWCGHPSTILEVNM-KGEV-LSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEESTTEEEEEECT-TSCE-EEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred EEecCCCCEEEEEeC-CCCE-EEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 88877 778888886 4543 33322 1112334455664 4889999999999999987 553
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.72 E-value=3.4e-07 Score=66.04 Aligned_cols=123 Identities=15% Similarity=0.108 Sum_probs=83.0
Q ss_pred ccCccceEEEeccCCCeeEEEEccCCe-EEEEe----------CCCeEEEEEcCCCCCccCceeEEEeec------CCcc
Q psy2113 39 ILQKTPLITLKGHKEAISAVQWTAVDE-IITSS----------WDHTLKIWDAELGGMKKGAIVKSTFSS------HKEW 101 (183)
Q Consensus 39 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~~~~~------~~~~ 101 (183)
..+.+.+..+..+..+ .++|+|+++ +++++ .++.|.+||..+.+. ...+.. +...
T Consensus 38 ~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~------~~~i~~~~~~~~~g~~ 109 (361)
T 2oiz_A 38 YTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF------EKEISLPPKRVQGLNY 109 (361)
T ss_dssp TTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE------EEEEEECTTBCCBCCC
T ss_pred CCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE------EEEEEcCccccccCCC
Confidence 3455566677666555 899999987 55544 357899999887654 333322 2234
Q ss_pred eEEEEEecCCCCEEEEEeC--CCeEEEEeCCCCCcceEE-eccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecC
Q psy2113 102 VQSVRWSPIDPQLFVSASF--DNSVKLWDLRSPKVPLFD-MLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 102 v~~~~~~p~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~ 173 (183)
...++++| ++++++++.. ++.|.+||+.+.+. +.. +. ... ...+.+.|. ..+++.+.||.+.+|+...
T Consensus 110 p~~i~~sp-dg~~l~v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 110 DGLFRQTT-DGKFIVLQNASPATSIGIVDVAKGDY-VEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp GGGEEECT-TSSEEEEEEESSSEEEEEEETTTTEE-EEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred cceEEECC-CCCEEEEECCCCCCeEEEEECCCCcE-EEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 67799999 7888877764 57999999998864 444 33 222 222444543 6778888999999998865
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.2e-06 Score=63.31 Aligned_cols=156 Identities=9% Similarity=0.023 Sum_probs=84.7
Q ss_pred eEEEEEee-cCcEEEEEEeccCC---CCcccccccCccceEEEeccC--CCeeEEEEccCCe-EEEEeCC-----CeEEE
Q psy2113 10 TLGVIFMT-VGALLTLTNIEVTS---LPSFFQLILQKTPLITLKGHK--EAISAVQWTAVDE-IITSSWD-----HTLKI 77 (183)
Q Consensus 10 ~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~-l~s~~~d-----~~v~v 77 (183)
...+.|+| ++..++......+. ......+.. ......+..+. ..+..+.|+|++. |+.++.+ +.|++
T Consensus 190 ~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~-~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 190 LGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNED-GSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETT-SCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred cccceECCCCCCEEEEEecCCCCCCCceEEEEECC-CCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 45678999 77765554321111 011111111 22223333332 2578899999876 6655443 44999
Q ss_pred EEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe----------------CCCeEEEEeCCCCCcceEEecc
Q psy2113 78 WDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS----------------FDNSVKLWDLRSPKVPLFDMLG 141 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------------~dg~i~vwd~~~~~~~~~~~~~ 141 (183)
||+.+++. ..+..... .. +.|+|.++++++.++ .+..|++||+.+++. ..+..
T Consensus 269 ~d~~~g~~-------~~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~--~~l~~ 337 (396)
T 3c5m_A 269 ANPETLEN-------EEVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA--QKLCK 337 (396)
T ss_dssp ECTTTCCE-------EEEEECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC--CEEEE
T ss_pred EECCCCCe-------EEeeeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce--EEccC
Confidence 99987653 12221222 23 788883445666544 347899999987763 23333
Q ss_pred CCC-----------cEEEEEecCC-cEEEEec-CCCcEEEEE--ecCCCCC
Q psy2113 142 HED-----------KVMCVNWSDY-RYIMSGG-QDNSVRVFK--TKHQPKS 177 (183)
Q Consensus 142 ~~~-----------~v~~~~~~~~-~~l~~~~-~dg~i~iwd--~~~~~~~ 177 (183)
+.. .+..+.|+|+ ..|+..+ .++...+|. +..+...
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~ 388 (396)
T 3c5m_A 338 HSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKH 388 (396)
T ss_dssp CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC-
T ss_pred CCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEcccccc
Confidence 433 2566789965 5565444 456555554 4454443
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7.5e-06 Score=56.73 Aligned_cols=146 Identities=9% Similarity=0.105 Sum_probs=95.0
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEE--eccCCCeeEEEEccCCeEEEE-eCCCeEEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITL--KGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~l~s~-~~d~~v~vwd~~ 81 (183)
...++++.++|.+..+.. +..++. . .....+ ..+...+.++++.+++.+..+ ..++.|..||..
T Consensus 16 ~~~~i~~d~~g~l~v~~~~~~~v~~~d~-------~--~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 16 GPYGITVSDKGKVWITQHKANMISCINL-------D--GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-------T--CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CccceEECCCCCEEEEecCCCcEEEEcC-------C--CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 456888999998776542 222321 1 112222 234567899999988775544 457889999875
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
+... ...+......+..+++.| ++.++++...++.|..||. +++............+..+++.++ ..+++.
T Consensus 87 -g~~~-----~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 158 (299)
T 2z2n_A 87 -GIIK-----EYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE 158 (299)
T ss_dssp -SCEE-----EEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred -CcEE-----EEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence 2210 111222455789999999 7888887777889999998 554322223334567899999965 566666
Q ss_pred cCCCcEEEEEe
Q psy2113 161 GQDNSVRVFKT 171 (183)
Q Consensus 161 ~~dg~i~iwd~ 171 (183)
..++.|..||.
T Consensus 159 ~~~~~i~~~~~ 169 (299)
T 2z2n_A 159 NQNNAIGRITE 169 (299)
T ss_dssp TTTTEEEEECT
T ss_pred CCCCEEEEEcC
Confidence 66788999987
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6.1e-06 Score=63.05 Aligned_cols=159 Identities=16% Similarity=0.136 Sum_probs=102.6
Q ss_pred eceeEEEEEeecCcEEEEEEeccCCCCcccccc--cCccceEEEeccCCCeeEEEEc----cCCe-E-EEEeCCCeEEEE
Q psy2113 7 GILTLGVIFMTVGALLTLTNIEVTSLPSFFQLI--LQKTPLITLKGHKEAISAVQWT----AVDE-I-ITSSWDHTLKIW 78 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~----~~~~-l-~s~~~d~~v~vw 78 (183)
|....+++|+|+|+++.+.+.. -.+.. . +. .+.+.+.++.... ....++|+ |+++ + ++...++.+.++
T Consensus 196 g~~p~~v~~SpDGr~lyv~~~d-g~V~v-i-D~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~Vi 271 (567)
T 1qks_A 196 GYAVHISRLSASGRYLFVIGRD-GKVNM-I-DLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIM 271 (567)
T ss_dssp SSCEEEEEECTTSCEEEEEETT-SEEEE-E-ETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEE
T ss_pred CCCccceEECCCCCEEEEEcCC-CeEEE-E-ECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEE
Confidence 3345688999999988876521 00111 1 22 2445566666533 35789999 5875 4 455567999999
Q ss_pred EcCCCCCccCceeEEEeec----------C-CcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEE
Q psy2113 79 DAELGGMKKGAIVKSTFSS----------H-KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVM 147 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~----------~-~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~ 147 (183)
|..+.+. ...+.. | ...+..+..+++...++++...+|.|.++|..+.+..............
T Consensus 272 D~~t~~~------~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~ 345 (567)
T 1qks_A 272 DGETLEP------KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLH 345 (567)
T ss_dssp ETTTCCE------EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEE
T ss_pred ECCCCcE------EEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecccccc
Confidence 9877664 222211 1 2257788888855666777777899999999876532222223345677
Q ss_pred EEEecCC-cEEE-EecCCCcEEEEEecCCC
Q psy2113 148 CVNWSDY-RYIM-SGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 148 ~~~~~~~-~~l~-~~~~dg~i~iwd~~~~~ 175 (183)
.+.|+++ .+++ +...+++|.++|+.+++
T Consensus 346 d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 346 DGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp EEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred CceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 8899965 6554 45568899999998764
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=9.9e-06 Score=56.11 Aligned_cols=146 Identities=10% Similarity=0.055 Sum_probs=93.9
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEE--eccCCCeeEEEEccCCeEE-EEeCCCeEEEEEcC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITL--KGHKEAISAVQWTAVDEII-TSSWDHTLKIWDAE 81 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~l~-s~~~d~~v~vwd~~ 81 (183)
...++++.+++.+..+.. +..++. . . ....+ ......+.++.+.+++.+. +...++.|.+||.
T Consensus 58 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~-------~-g-~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~- 127 (299)
T 2z2n_A 58 KVMCLTISSDGEVWFTENAANKIGRITK-------K-G-IIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD- 127 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-------T-S-CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-
T ss_pred ceeeEEECCCCCEEEeCCCCCeEEEECC-------C-C-cEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-
Confidence 356788888888766542 222221 1 1 12222 2245578899999887755 4456789999997
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
++... ..........+..+++.+ +++++++...++.|..||. +++............+..+++.++ ..+++.
T Consensus 128 ~g~~~-----~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 200 (299)
T 2z2n_A 128 DGKIR-----EYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVE 200 (299)
T ss_dssp TCCEE-----EEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEE
T ss_pred CCCEE-----EecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEc
Confidence 43321 111223445689999999 7778887777789999999 655312223334556889999865 666666
Q ss_pred cCCCcEEEEEe
Q psy2113 161 GQDNSVRVFKT 171 (183)
Q Consensus 161 ~~dg~i~iwd~ 171 (183)
..++.|..||.
T Consensus 201 ~~~~~i~~~~~ 211 (299)
T 2z2n_A 201 IIGNKIGRITT 211 (299)
T ss_dssp TTTTEEEEECT
T ss_pred cCCceEEEECC
Confidence 66788999998
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.8e-07 Score=71.77 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=73.9
Q ss_pred CCeeEEEEccCCe-EEEEeCC-----CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC----
Q psy2113 53 EAISAVQWTAVDE-IITSSWD-----HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN---- 122 (183)
Q Consensus 53 ~~v~~~~~~~~~~-l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---- 122 (183)
..+..+.|+|+|+ |+.++.+ ..|++||+.+++.. ....+...+..++|+| + +.|+.++.++
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~-------~~~~~~~~~~~~~wsp-D-~~l~~~~~~~~~~~ 233 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL-------ADELKWVKFSGLAWLG-N-DALLYSRFAEPKEG 233 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEE-------EEEEEEEESCCCEEST-T-SEEEEEECCCC---
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCC-------CccCCCceeccEEEEC-C-CEEEEEEecCcccc
Confidence 3678899999987 5444332 46999999887641 1111222235789999 6 7777666554
Q ss_pred ----------eEEEEeCCCCCc---ceEEeccCCCcEEEEEecCC-cEEEEecCCC-----cEEEEEecCC
Q psy2113 123 ----------SVKLWDLRSPKV---PLFDMLGHEDKVMCVNWSDY-RYIMSGGQDN-----SVRVFKTKHQ 174 (183)
Q Consensus 123 ----------~i~vwd~~~~~~---~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg-----~i~iwd~~~~ 174 (183)
.|++|++.++.. .+.....+...+..+.|+|+ ++|+..+.++ .|.+||+.++
T Consensus 234 ~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 234 QAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp -----CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred cccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 389999977652 12222233345889999966 6776665443 7999999875
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.60 E-value=6.2e-06 Score=60.52 Aligned_cols=117 Identities=9% Similarity=0.054 Sum_probs=78.6
Q ss_pred cCCCeeEEEEcc-CCeEEEEeCCCeEEEEEcCCCCCccCceeEEE--eecCCcce--EEEEEecCCCCEEEEEeCCCeEE
Q psy2113 51 HKEAISAVQWTA-VDEIITSSWDHTLKIWDAELGGMKKGAIVKST--FSSHKEWV--QSVRWSPIDPQLFVSASFDNSVK 125 (183)
Q Consensus 51 h~~~v~~~~~~~-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~--~~~~~~~v--~~~~~~p~~~~~l~~~~~dg~i~ 125 (183)
....+.+++++| ++.|+.+..++.|+.||..+.... .... ..++...- ..++|+|+++.++++-..++.|+
T Consensus 217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~----~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~ 292 (409)
T 3hrp_A 217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT----LIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVY 292 (409)
T ss_dssp SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE----EEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEE
T ss_pred hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE----EEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEE
Confidence 345678899998 677777778899999998765421 0100 11122222 38999995577777777788999
Q ss_pred EEeCCCCCcceEEeccCC---------------CcEEEEEecCC-cEEEEec-CCCcEEEEEecCC
Q psy2113 126 LWDLRSPKVPLFDMLGHE---------------DKVMCVNWSDY-RYIMSGG-QDNSVRVFKTKHQ 174 (183)
Q Consensus 126 vwd~~~~~~~~~~~~~~~---------------~~v~~~~~~~~-~~l~~~~-~dg~i~iwd~~~~ 174 (183)
.|+.... ...+.++. .....++++++ .++++-. .++.|+.||+.++
T Consensus 293 ~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 293 KITPDGE---CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp EECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred EEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 9987643 23333322 34789999965 6667777 7889999996544
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.58 E-value=2.1e-05 Score=54.97 Aligned_cols=143 Identities=9% Similarity=0.115 Sum_probs=91.0
Q ss_pred eEEEEEeecCcEEEE-------EE----eccCCCCcccccccCccceEEEe-----ccCCCeeEEEEccC-CeEEEEeCC
Q psy2113 10 TLGVIFMTVGALLTL-------TN----IEVTSLPSFFQLILQKTPLITLK-----GHKEAISAVQWTAV-DEIITSSWD 72 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~-~~l~s~~~d 72 (183)
..+++|++++.++.+ .. +..|+.. ..+. ..+. ++...+.++.+.++ +.+..++..
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~-------~g~~-~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~ 91 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLK-------TGKK-TVICKPEVNGYGGIPAGCQCDRDANQLFVADMR 91 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTT-------TCCE-EEEECCEETTEECCEEEEEECSSSSEEEEEETT
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCC-------CCcE-EEEEecccCCCCCCCceEEEecCCCcEEEEECC
Confidence 357889999987766 21 3333321 1111 2222 25567899999988 887766666
Q ss_pred CeEEEEEcCCCCCccCceeEEEe-e-----cCCcceEEEEEecCCCCEEEEEeCC---------------CeEEEEeCCC
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTF-S-----SHKEWVQSVRWSPIDPQLFVSASFD---------------NSVKLWDLRS 131 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~-~-----~~~~~v~~~~~~p~~~~~l~~~~~d---------------g~i~vwd~~~ 131 (183)
..|.+||.. ++. ..+ . .....+.+++++| +++++++...+ +.|..||..
T Consensus 92 ~~l~~~d~~-g~~-------~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 161 (314)
T 1pjx_A 92 LGLLVVQTD-GTF-------EEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD- 161 (314)
T ss_dssp TEEEEEETT-SCE-------EECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-
T ss_pred CCEEEEeCC-CCE-------EEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCeEEEECCC-
Confidence 689999987 442 111 1 1124578999999 78887777655 567777765
Q ss_pred CCcceEEeccCCCcEEEEEec----CCc-EE-EEecCCCcEEEEEec
Q psy2113 132 PKVPLFDMLGHEDKVMCVNWS----DYR-YI-MSGGQDNSVRVFKTK 172 (183)
Q Consensus 132 ~~~~~~~~~~~~~~v~~~~~~----~~~-~l-~~~~~dg~i~iwd~~ 172 (183)
++ ......+......++|+ ++. .+ ++...++.|.+||+.
T Consensus 162 g~--~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~ 206 (314)
T 1pjx_A 162 GQ--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp SC--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred CC--EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence 43 23333334456888998 773 44 455668899999986
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.8e-06 Score=58.75 Aligned_cols=127 Identities=9% Similarity=0.060 Sum_probs=83.7
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCeEEEEe-CCCeEEEEEcCCCCCccCceeEEEeecCC-----cceEEEEEecCC
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDEIITSS-WDHTLKIWDAELGGMKKGAIVKSTFSSHK-----EWVQSVRWSPID 111 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~p~~ 111 (183)
+..+.+.+.++. .......+++++++++..+. .++.|.+||..+.+. ...+.... .....+++ . +
T Consensus 70 D~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~------~~~i~~g~~~~~~~~p~~i~~-~-~ 140 (328)
T 3dsm_A 70 DINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI------TGYIECPDMDMESGSTEQMVQ-Y-G 140 (328)
T ss_dssp ETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE------EEEEECTTCCTTTCBCCCEEE-E-T
T ss_pred ECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE------EEEEEcCCccccCCCcceEEE-E-C
Confidence 334556666664 34667899998888866555 889999999987654 22333222 14556666 3 5
Q ss_pred CCEEEEEe-CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCC----------CcEEEEEecCCC
Q psy2113 112 PQLFVSAS-FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQD----------NSVRVFKTKHQP 175 (183)
Q Consensus 112 ~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d----------g~i~iwd~~~~~ 175 (183)
+.++++.. .++.|.++|+.+++. ...+.. ......+.++++ .++++...+ +.|.++|.++.+
T Consensus 141 ~~lyv~~~~~~~~v~viD~~t~~~-~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~ 214 (328)
T 3dsm_A 141 KYVYVNCWSYQNRILKIDTETDKV-VDELTI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT 214 (328)
T ss_dssp TEEEEEECTTCCEEEEEETTTTEE-EEEEEC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred CEEEEEcCCCCCEEEEEECCCCeE-EEEEEc-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCe
Confidence 66666654 488999999998764 444433 334567888875 555555444 789999987654
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.55 E-value=6.3e-06 Score=57.66 Aligned_cols=155 Identities=8% Similarity=0.109 Sum_probs=89.4
Q ss_pred ceeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEecc-----CCCeeEEEEccCCeEEEEeC----------C
Q psy2113 8 ILTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGH-----KEAISAVQWTAVDEIITSSW----------D 72 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~l~s~~~----------d 72 (183)
-...++++++++.+++...-.++. + +....+ +..+... ...++.+++.|++.+..++. .
T Consensus 54 ~~~~~i~~~~dG~l~v~~~~~l~~---~--d~~~g~-~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~ 127 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATIGTKFCA---L--NWKEQS-AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLER 127 (297)
T ss_dssp SCEEEEEEBTTSSEEEEETTEEEE---E--ETTTTE-EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCT
T ss_pred CceEEEEECCCCCEEEEECCeEEE---E--ECCCCc-EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccC
Confidence 345688999999966654311111 1 111121 1222111 23478899999888655542 1
Q ss_pred CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCC-EEEEEeCCCeEEEEeCC--CCCcc----eEEeccCCCc
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQ-LFVSASFDNSVKLWDLR--SPKVP----LFDMLGHEDK 145 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~i~vwd~~--~~~~~----~~~~~~~~~~ 145 (183)
..-.+|.+..... ...+.........++|+| +++ ++++.+.++.|.+||+. ++... ...+..+...
T Consensus 128 ~~~~l~~~d~~g~------~~~~~~~~~~pngi~~sp-dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~ 200 (297)
T 3g4e_A 128 HQGALYSLFPDHH------VKKYFDQVDISNGLDWSL-DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQI 200 (297)
T ss_dssp TCEEEEEECTTSC------EEEEEEEESBEEEEEECT-TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCE
T ss_pred CCcEEEEEECCCC------EEEEeeccccccceEEcC-CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCC
Confidence 3345555543321 112223334568899999 665 45666668899999873 44320 1122233456
Q ss_pred EEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 146 VMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 146 v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+..+++.++ .+.++...++.|..||..+++
T Consensus 201 p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~ 231 (297)
T 3g4e_A 201 PDGMCIDAEGKLWVACYNGGRVIRLDPVTGK 231 (297)
T ss_dssp EEEEEEBTTSCEEEEEETTTEEEEECTTTCC
T ss_pred CCeeEECCCCCEEEEEcCCCEEEEEcCCCce
Confidence 788999855 666666667889999987654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=5.7e-05 Score=53.59 Aligned_cols=143 Identities=10% Similarity=0.020 Sum_probs=87.6
Q ss_pred eeEEEEEeecCcEEEEEEe--------ccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-E-EEEeCCCeEEEE
Q psy2113 9 LTLGVIFMTVGALLTLTNI--------EVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-I-ITSSWDHTLKIW 78 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vw 78 (183)
...+++++|+|.+.....- .+|.+ + ..+ +..+..+....+.++|+|++. + ++.+.++.|.+|
T Consensus 135 ~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~-----~--~g~-~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~ 206 (326)
T 2ghs_A 135 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHV-----A--KGK-VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRV 206 (326)
T ss_dssp EEEEEEECTTSCEEEEEEETTCCTTCEEEEEE-----E--TTE-EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEE
T ss_pred CCCCEEECCCCCEEEEeCCCcCCCCceEEEEE-----e--CCc-EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEE
Confidence 4567889999987655421 12211 1 122 222333444567899998875 4 455667899999
Q ss_pred EcC--CC-CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CC
Q psy2113 79 DAE--LG-GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DY 154 (183)
Q Consensus 79 d~~--~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~ 154 (183)
|+. ++ .... ......+......+..+++.+ +++++++...++.|..||. +++. ...+..+...+.+++|. ++
T Consensus 207 d~~~~~Gl~~~~-~~~~~~~~~~~~~p~gi~~d~-~G~lwva~~~~~~v~~~d~-~g~~-~~~i~~~~~~~~~~af~g~d 282 (326)
T 2ghs_A 207 PLDARTGLPTGK-AEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDT-DGNH-IARYEVPGKQTTCPAFIGPD 282 (326)
T ss_dssp EBCTTTCCBSSC-CEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECT-TCCE-EEEEECSCSBEEEEEEESTT
T ss_pred EcccccCCcccC-ceEEEECCCCCCCCCeeEECC-CCCEEEEEeCCCEEEEECC-CCCE-EEEEECCCCCcEEEEEecCC
Confidence 986 33 2211 111222223345677899998 7788877767789999998 4443 45555566679999998 65
Q ss_pred -cEE-EEecCC
Q psy2113 155 -RYI-MSGGQD 163 (183)
Q Consensus 155 -~~l-~~~~~d 163 (183)
..| ++...+
T Consensus 283 ~~~L~vt~~~~ 293 (326)
T 2ghs_A 283 ASRLLVTSARE 293 (326)
T ss_dssp SCEEEEEEBCT
T ss_pred CCEEEEEecCC
Confidence 555 444333
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=6.3e-06 Score=62.99 Aligned_cols=105 Identities=13% Similarity=0.117 Sum_probs=76.7
Q ss_pred cCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC--CCCcceEE
Q psy2113 62 AVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR--SPKVPLFD 138 (183)
Q Consensus 62 ~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~ 138 (183)
+.+. +++...++.|.++|..+.+. ...+. ....+..+.++| +++++++++.|+.|.+||+. +.+. +..
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v------~~~i~-~g~~p~~v~~Sp-DGr~lyv~~~dg~V~viD~~~~t~~~-v~~ 235 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEI------KTVLD-TGYAVHISRLSA-SGRYLFVIGRDGKVNMIDLWMKEPTT-VAE 235 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCE------EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCCE-EEE
T ss_pred CCceEEEEeCCCCeEEEEECCCCeE------EEEEe-CCCCccceEECC-CCCEEEEEcCCCeEEEEECCCCCCcE-eEE
Confidence 4445 56777889999999988764 43444 334577999999 88898889999999999996 5554 444
Q ss_pred eccCCCcEEEEEec----CC-cEEEEecC-CCcEEEEEecCCCC
Q psy2113 139 MLGHEDKVMCVNWS----DY-RYIMSGGQ-DNSVRVFKTKHQPK 176 (183)
Q Consensus 139 ~~~~~~~v~~~~~~----~~-~~l~~~~~-dg~i~iwd~~~~~~ 176 (183)
+.. ......++|+ |+ +++++++. ++.|.++|..+.+.
T Consensus 236 i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~ 278 (567)
T 1qks_A 236 IKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP 278 (567)
T ss_dssp EEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE
T ss_pred Eec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE
Confidence 443 3356899999 34 66666554 68999999776543
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.9e-05 Score=54.41 Aligned_cols=147 Identities=14% Similarity=0.025 Sum_probs=88.0
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKG 88 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 88 (183)
+..+.+|+|++..+...+.....+..+ +.... ....+. ....+.++.|.+++.++.++.+ .|.+||..+++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~--d~~~~-~~~~~~-~~~~v~~i~~~~dg~l~v~~~~-gl~~~d~~~g~~--- 121 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHEL--HLASG-RKTVHA-LPFMGSALAKISDSKQLIASDD-GLFLRDTATGVL--- 121 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEE--ETTTT-EEEEEE-CSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCE---
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEE--ECCCC-cEEEEE-CCCcceEEEEeCCCeEEEEECC-CEEEEECCCCcE---
Confidence 456788999866555544322111111 11112 222232 3467899999999987666644 489999876653
Q ss_pred ceeEEEeec-----CCcceEEEEEecCCCCEEEEEeC------CCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cE
Q psy2113 89 AIVKSTFSS-----HKEWVQSVRWSPIDPQLFVSASF------DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RY 156 (183)
Q Consensus 89 ~~~~~~~~~-----~~~~v~~~~~~p~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~ 156 (183)
..+.. ....+..+.++| +++++++... .+.|..++ +++ ...+.........++|+++ +.
T Consensus 122 ----~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~~~~~~i~~s~dg~~ 192 (326)
T 2ghs_A 122 ----TLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADISIPNSICFSPDGTT 192 (326)
T ss_dssp ----EEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEESSEEEEEECTTSCE
T ss_pred ----EEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCCcccCCeEEcCCCCE
Confidence 11211 124588999999 7777765542 24566666 333 2333333345688999965 44
Q ss_pred E-EEecCCCcEEEEEec
Q psy2113 157 I-MSGGQDNSVRVFKTK 172 (183)
Q Consensus 157 l-~~~~~dg~i~iwd~~ 172 (183)
+ ++.+.++.|.+||+.
T Consensus 193 lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 193 GYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEEETTTCEEEEEEBC
T ss_pred EEEEECCCCEEEEEEcc
Confidence 4 555667899999986
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.50 E-value=2.5e-05 Score=54.78 Aligned_cols=154 Identities=9% Similarity=0.066 Sum_probs=94.3
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeC-CCeEEEEEcCCCCCcc
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSW-DHTLKIWDAELGGMKK 87 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~ 87 (183)
...+.+|+|++..+...+.....+..+ +. .. ....+..+...+..+.+.+++.++.+.. ++.|.+|+.. +....
T Consensus 46 ~~egp~~~~~g~~l~~~d~~~~~i~~~--~~-~g-~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~ 120 (305)
T 3dr2_A 46 WSEGPAWWEAQRTLVWSDLVGRRVLGW--RE-DG-TVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHL 120 (305)
T ss_dssp SEEEEEEEGGGTEEEEEETTTTEEEEE--ET-TS-CEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred CccCCeEeCCCCEEEEEECCCCEEEEE--eC-CC-CEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEE
Confidence 346889999998555554322221111 11 22 2345555667789999999988776654 5789999875 33210
Q ss_pred CceeEEEeec-CCcceEEEEEecCCCCEEEE----EeC-------------CCeEEEEeCCCCCcceEEeccCCCcEEEE
Q psy2113 88 GAIVKSTFSS-HKEWVQSVRWSPIDPQLFVS----ASF-------------DNSVKLWDLRSPKVPLFDMLGHEDKVMCV 149 (183)
Q Consensus 88 ~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~----~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 149 (183)
......+ ....+..+++.| +++++++ |.. .+.|..+|..+++. ..+. .....+.+
T Consensus 121 ---~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~--~~~~-~~~~p~gl 193 (305)
T 3dr2_A 121 ---LVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL--QRMA-DLDHPNGL 193 (305)
T ss_dssp ---EECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC--EEEE-EESSEEEE
T ss_pred ---EEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE--EEEe-cCCCCcce
Confidence 0001111 113467899999 8888886 332 25688888876664 2222 44567889
Q ss_pred EecCC-cEEEEecCC------CcEEEEEecCC
Q psy2113 150 NWSDY-RYIMSGGQD------NSVRVFKTKHQ 174 (183)
Q Consensus 150 ~~~~~-~~l~~~~~d------g~i~iwd~~~~ 174 (183)
+|+++ ..|+.+... +.|.+|++...
T Consensus 194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp EECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred EEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 99976 556665554 68999998753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.48 E-value=7.8e-05 Score=51.57 Aligned_cols=147 Identities=7% Similarity=0.063 Sum_probs=94.1
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccce-EEEeccCCCeeEEEEccCCeEEEE-eCCCeEEEEEcCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPL-ITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAEL 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~l~s~-~~d~~v~vwd~~~ 82 (183)
...++++.+++.+..+.. +..++. . .+.. ..+..+...+.++.+.+++.+..+ ..++.|..+|..
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~-------~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQ-------S-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECT-------T-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECC-------C-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 456788899988766542 222221 1 1111 122233467889999988775544 457889999876
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
++.. ..........+..+++.+ +++++++...++.|..+|.. ++............+..+++.++ ...++..
T Consensus 92 g~~~-----~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 164 (300)
T 2qc5_A 92 GGFT-----EYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTEN 164 (300)
T ss_dssp SCEE-----EEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred CCeE-----EecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEec
Confidence 3321 112222346689999998 78888877778899999987 54312223334567889999865 6556666
Q ss_pred CCCcEEEEEe
Q psy2113 162 QDNSVRVFKT 171 (183)
Q Consensus 162 ~dg~i~iwd~ 171 (183)
.++.|..+|.
T Consensus 165 ~~~~i~~~~~ 174 (300)
T 2qc5_A 165 QNNSIGRITN 174 (300)
T ss_dssp TTTEEEEECT
T ss_pred CCCeEEEECC
Confidence 6788998887
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=3e-05 Score=60.66 Aligned_cols=161 Identities=17% Similarity=0.161 Sum_probs=90.8
Q ss_pred eeEEEEEeecCcEEEEEEeccCC--CCcccccccCccceEE-EeccCCCeeEEEEccCCe-EEEEeCCC-----------
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTS--LPSFFQLILQKTPLIT-LKGHKEAISAVQWTAVDE-IITSSWDH----------- 73 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~~~~-l~s~~~d~----------- 73 (183)
...++.|||+|..++...-..-+ ......+...++.+.. +.. .....++|+ ++. |+.++.+.
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~ 206 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTD 206 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CC
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCC
Confidence 45678999999988864311111 0011112333333221 111 113577899 765 77776663
Q ss_pred --eEEEEEcCCCCCccCceeEEEeec-CCcceEEEEEecCCCCEEE-EEeC---CCeEEEEeCCCCCcceEEeccCCCcE
Q psy2113 74 --TLKIWDAELGGMKKGAIVKSTFSS-HKEWVQSVRWSPIDPQLFV-SASF---DNSVKLWDLRSPKVPLFDMLGHEDKV 146 (183)
Q Consensus 74 --~v~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~-~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~v 146 (183)
.|++|++.+..... ..+..... |...+..+.++| ++++++ +... +..|+++|+.++......+..+....
T Consensus 207 ~~~v~~~~lgt~~~~~--~~v~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~ 283 (693)
T 3iuj_A 207 QHKVYFHRLGTAQEDD--RLVFGAIPAQHHRYVGATVTE-DDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD 283 (693)
T ss_dssp CCEEEEEETTSCGGGC--EEEESCSGGGCCSEEEEEECT-TSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred CcEEEEEECCCCcccc--eEEEecCCCCCeEEEEEEEcC-CCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence 49999987654321 11212222 444578899999 676654 3332 35899999987643245555666555
Q ss_pred EEEEecCC-cEEEEecCC---CcEEEEEecCCC
Q psy2113 147 MCVNWSDY-RYIMSGGQD---NSVRVFKTKHQP 175 (183)
Q Consensus 147 ~~~~~~~~-~~l~~~~~d---g~i~iwd~~~~~ 175 (183)
......++ .+++....+ +.|..+|+.++.
T Consensus 284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~ 316 (693)
T 3iuj_A 284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPG 316 (693)
T ss_dssp EEEEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 55433344 455555444 578999988754
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-05 Score=56.35 Aligned_cols=149 Identities=13% Similarity=0.105 Sum_probs=92.0
Q ss_pred eceeEEEEEeecCcEEEEEE-e-----ccCCCCcccccccCccceEEE-------eccCCCeeEEEEccCCeEEEEeC--
Q psy2113 7 GILTLGVIFMTVGALLTLTN-I-----EVTSLPSFFQLILQKTPLITL-------KGHKEAISAVQWTAVDEIITSSW-- 71 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~-------~~h~~~v~~~~~~~~~~l~s~~~-- 71 (183)
.....+++++++|+++.... . .++.+. .++ +..+ ..|...+.++++.++++|.....
T Consensus 16 ~~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-------~g~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~ 87 (343)
T 2qe8_A 16 SLAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-------QDG-LIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGN 87 (343)
T ss_dssp SSCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-------TTE-EEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHH
T ss_pred CCCcceEEECCCCCEEEEeCCCCCCceEEEEEC-------CCC-eecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCC
Confidence 34567899999998877642 1 222211 111 1111 23556889999999888655442
Q ss_pred ----CCeEEEEEcCCCCCccCceeEEEee------cCCcceEEEEEecCCCCEEEEEe---CCCeEEEEeCCCCCcceEE
Q psy2113 72 ----DHTLKIWDAELGGMKKGAIVKSTFS------SHKEWVQSVRWSPIDPQLFVSAS---FDNSVKLWDLRSPKVPLFD 138 (183)
Q Consensus 72 ----d~~v~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~p~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~ 138 (183)
+..|.+||+.+++. ...+. .+...+..++++|.++..+++-. .++.|.+||+.+++. ...
T Consensus 88 ~~~~~~~i~~~d~~tg~~------~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~-~r~ 160 (343)
T 2qe8_A 88 QSKSVPKLVAWDTLNNQL------SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA-ARV 160 (343)
T ss_dssp HHTSCCEEEEEETTTTEE------EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE-EEE
T ss_pred CcCCCCeEEEEECCCCeE------EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE-EEE
Confidence 57999999987653 22222 12345688999984455556655 678999999987653 222
Q ss_pred eccC-----------------------------CCcEEEEEecCC-cEEEEecCCC-cEEEEE
Q psy2113 139 MLGH-----------------------------EDKVMCVNWSDY-RYIMSGGQDN-SVRVFK 170 (183)
Q Consensus 139 ~~~~-----------------------------~~~v~~~~~~~~-~~l~~~~~dg-~i~iwd 170 (183)
+.+| ...+..++|+++ ..|+.+..++ .|..++
T Consensus 161 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~ 223 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIK 223 (343)
T ss_dssp CTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEE
T ss_pred ecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEE
Confidence 2221 123688999966 5777766655 455444
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-05 Score=57.94 Aligned_cols=113 Identities=10% Similarity=0.076 Sum_probs=78.2
Q ss_pred CCeeEEEEccCCeEE-EEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC--eEEEEeC
Q psy2113 53 EAISAVQWTAVDEII-TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN--SVKLWDL 129 (183)
Q Consensus 53 ~~v~~~~~~~~~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~vwd~ 129 (183)
.....|+|++++.|+ +...++.|++||..++.. ...... ..... ++|+| +++.++.+..++ .|.+++.
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~------~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~ 201 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV------TTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMK 201 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE------EEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE------EEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEc
Confidence 356789999888854 555678999999976553 222222 22334 99999 777777777655 8999998
Q ss_pred CCCCcceEEe----ccCCCcEEEEEecC-CcEEEEecCCCcEEEEEecCCC
Q psy2113 130 RSPKVPLFDM----LGHEDKVMCVNWSD-YRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 130 ~~~~~~~~~~----~~~~~~v~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
..... ...+ ......+.+++++| +..|+.+..++.|+.||+.+..
T Consensus 202 ~~~~~-~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 202 ASGWA-PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp GGTTC-EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred CCCce-eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 76553 2222 22446678899997 5667667778899999987553
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.42 E-value=0.00014 Score=50.34 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=91.4
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccc-eEEEeccCCCeeEEEEccCCeEE-EEeCCCeEEEEEcCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTP-LITLKGHKEAISAVQWTAVDEII-TSSWDHTLKIWDAEL 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~l~-s~~~d~~v~vwd~~~ 82 (183)
...++++.+++.+..+.. +..++ .. .+. ...+......+.++++.+++.+. +...++.|..+|..
T Consensus 63 ~~~~i~~~~~g~l~v~~~~~~~v~~~d-------~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~- 133 (300)
T 2qc5_A 63 KVMCLIVSSLGDIWFTENGANKIGKLS-------KK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD- 133 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEEC-------TT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-
T ss_pred cceeEEECCCCCEEEEecCCCeEEEEC-------CC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-
Confidence 356778888887666542 22221 11 111 11222234678899999887755 44457899999876
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
++.. ...+......+..+++.+ +++++++...++.|..+|. +++............+..+++.++ ...++..
T Consensus 134 g~~~-----~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 206 (300)
T 2qc5_A 134 GTIY-----EYDLPNKGSYPAFITLGS-DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI 206 (300)
T ss_dssp SCEE-----EEECSSTTCCEEEEEECT-TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred CCEE-----EccCCCCCCCceeEEECC-CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc
Confidence 3321 111222345689999999 7777777766789999998 544312222234456889999865 5556555
Q ss_pred CCCcEEEEEe
Q psy2113 162 QDNSVRVFKT 171 (183)
Q Consensus 162 ~dg~i~iwd~ 171 (183)
..+.|..||.
T Consensus 207 ~~~~i~~~~~ 216 (300)
T 2qc5_A 207 MGNKIGRITT 216 (300)
T ss_dssp TTTEEEEECT
T ss_pred CCCEEEEEcC
Confidence 6678999987
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-05 Score=57.72 Aligned_cols=148 Identities=9% Similarity=-0.042 Sum_probs=95.6
Q ss_pred EEEeecCcEEEEEEeccCCCCc--ccccccCccceEEEeccCCCeeEEEEccCCe-EEEEe----------CCCeEEEEE
Q psy2113 13 VIFMTVGALLTLTNIEVTSLPS--FFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSS----------WDHTLKIWD 79 (183)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~----------~d~~v~vwd 79 (183)
.+..|++..+.+.+...+.... ...+..+.+.+.++.....+ . +.++|+++ ++.++ .++.|.+||
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD 115 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD 115 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence 4567889888888754221111 11244566677777665555 4 99999987 44443 367899999
Q ss_pred cCCCCCccCceeEEEeecC-------CcceEEEEEecCCCCEEEEEeC--CCeEEEEeCCCCCcceEEeccCCCcEEEEE
Q psy2113 80 AELGGMKKGAIVKSTFSSH-------KEWVQSVRWSPIDPQLFVSASF--DNSVKLWDLRSPKVPLFDMLGHEDKVMCVN 150 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~p~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 150 (183)
..+.+. ...+.-. ......+.++| ++++++.+.. ++.|.++|+.+.+. +..+.-.. . ...
T Consensus 116 ~~t~~v------~~~I~v~~g~r~~~g~~P~~~a~sp-DGk~lyVan~~~~~~VsVID~~t~~v-v~tI~v~g--~-~~~ 184 (386)
T 3sjl_D 116 PVTLLP------TADIELPDAPRFLVGTYPWMTSLTP-DGKTLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPD--C-YHI 184 (386)
T ss_dssp TTTCCE------EEEEEETTCCCCCBSCCGGGEEECT-TSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS--E-EEE
T ss_pred CCCCeE------EEEEECCCccccccCCCCceEEEcC-CCCEEEEEEcCCCCeEEEEECCCCcE-EEEEECCC--c-cee
Confidence 988764 3333211 12456789999 7777776653 68999999999875 44443221 1 122
Q ss_pred ecC-CcEEEEecCCCcEEEEEecC
Q psy2113 151 WSD-YRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 151 ~~~-~~~l~~~~~dg~i~iwd~~~ 173 (183)
+.. ...+++.+.||++.+.++..
T Consensus 185 ~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 185 FPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp EEEETTEEEEEETTSCEEEEECCS
T ss_pred ecCCCceeEEECCCCCEEEEECCC
Confidence 322 25677888899999999876
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00026 Score=51.33 Aligned_cols=120 Identities=7% Similarity=-0.118 Sum_probs=76.2
Q ss_pred cCccceEEEeccCCCeeEEEEccCCe-EEEEe----------CCCeEEEEEcCCCCCccCceeEEEeecC-------Ccc
Q psy2113 40 LQKTPLITLKGHKEAISAVQWTAVDE-IITSS----------WDHTLKIWDAELGGMKKGAIVKSTFSSH-------KEW 101 (183)
Q Consensus 40 ~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~~~~~~-------~~~ 101 (183)
.+.+.+..+.....+ .+.++|+++ ++.+. .++.|.+||..+.+. ...+... ...
T Consensus 55 ~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~------~~~i~~~~~~~~~~g~~ 126 (373)
T 2mad_H 55 GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP------IADIELPDAPRFDVGPY 126 (373)
T ss_pred CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcE------EEEEECCCccccccCCC
Confidence 345556666554444 999999987 44443 367899999986554 2222111 123
Q ss_pred eEEEEEecCCCCEEEEEeC--CCeEEEEeCCCCCcceEE-eccCCCcEEEEEec-C-CcEEEEecCCCcEEEEEecCCC
Q psy2113 102 VQSVRWSPIDPQLFVSASF--DNSVKLWDLRSPKVPLFD-MLGHEDKVMCVNWS-D-YRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 102 v~~~~~~p~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~-~~~~~~~v~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
...+.++| ++++++.+.. ++.|.++| .+++. +.. +. .... +.+. . ...+++.+.||.+.++|. +++
T Consensus 127 p~~~~~sp-DG~~l~v~n~~~~~~v~viD-~t~~~-~~~~i~-~~~~---~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 127 SWMNANTP-NNADLLFFQFAAGPAVGLVV-QGGSS-DDQLLS-SPTC---YHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred ccceEECC-CCCEEEEEecCCCCeEEEEE-CCCCE-EeEEcC-CCce---EEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 45889999 7888777764 57899999 88764 444 32 2222 2232 2 256677788999999998 544
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-07 Score=68.48 Aligned_cols=106 Identities=16% Similarity=0.080 Sum_probs=56.7
Q ss_pred cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc
Q psy2113 62 AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG 141 (183)
Q Consensus 62 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 141 (183)
.++.+++++.|+.++.||..+++. ...+.. ..+.+..+.+ ++..+++++.|+.|+.||.++++. +.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~------~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~ 77 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSI------KWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEG-LTKLPF 77 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCE------EEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CC-SEECSC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE------EEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCce-eeeeec
Confidence 357789999999999999998875 445544 3444444455 566778888999999999988765 333322
Q ss_pred CCC-cEE-EEEecCCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 142 HED-KVM-CVNWSDYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 142 ~~~-~v~-~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+.. .+. ......+..+++++.|+.|+.||.++++..
T Consensus 78 ~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~ 115 (369)
T 2hz6_A 78 TIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQ 115 (369)
T ss_dssp CHHHHHTTCSCC-----CCCCEEEEEEEEECCC-----
T ss_pred cCccccccCceEecCCEEEEEeCCCEEEEEECCCCcEE
Confidence 210 010 001112356667777788888887776654
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00053 Score=47.25 Aligned_cols=155 Identities=8% Similarity=-0.043 Sum_probs=89.5
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCC-CeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCcc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKE-AISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~ 87 (183)
..+++|++++.++....... .-.....+..+.+.+..+.-... ....+.+.. ++ +++.-.++.+.++|..+.+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~-~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~viD~~t~~v-- 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYG-RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFIYDRRTLSN-- 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTT-TCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEEEETTTTEE--
T ss_pred cccEEEeCCCeEEEECCCCC-CCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEEEECCCCcE--
Confidence 46899999875555432110 00001113445555555542222 223555553 45 45556789999999987664
Q ss_pred CceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec-cC-C---CcEEEEEecCCcEEEEecC
Q psy2113 88 GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML-GH-E---DKVMCVNWSDYRYIMSGGQ 162 (183)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~-~---~~v~~~~~~~~~~l~~~~~ 162 (183)
...+...... ...+++ ++..++.+..++.|.++|..+.+. ...+. +. . ..++.+.|.++...+....
T Consensus 99 ----~~~i~~g~~~--g~glt~-Dg~~l~vs~gs~~l~viD~~t~~v-~~~I~Vg~~~~p~~~~nele~~dg~lyvn~~~ 170 (266)
T 2iwa_A 99 ----IKNFTHQMKD--GWGLAT-DGKILYGSDGTSILYEIDPHTFKL-IKKHNVKYNGHRVIRLNELEYINGEVWANIWQ 170 (266)
T ss_dssp ----EEEEECCSSS--CCEEEE-CSSSEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred ----EEEEECCCCC--eEEEEE-CCCEEEEECCCCeEEEEECCCCcE-EEEEEECCCCcccccceeEEEECCEEEEecCC
Confidence 3344321111 233556 444444445688999999998775 33332 21 1 2367888886655566666
Q ss_pred CCcEEEEEecCCCC
Q psy2113 163 DNSVRVFKTKHQPK 176 (183)
Q Consensus 163 dg~i~iwd~~~~~~ 176 (183)
++.|.+.|+.+++.
T Consensus 171 ~~~V~vID~~tg~V 184 (266)
T 2iwa_A 171 TDCIARISAKDGTL 184 (266)
T ss_dssp SSEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcE
Confidence 88999999988764
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00039 Score=54.43 Aligned_cols=157 Identities=15% Similarity=0.143 Sum_probs=88.6
Q ss_pred eEEEEEeecCcEEEEEEeccCCC-CcccccccCc-cceEEEeccCCCeeEEEEccCCeEE-EEeC---CCeEEEEEcCCC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSL-PSFFQLILQK-TPLITLKGHKEAISAVQWTAVDEII-TSSW---DHTLKIWDAELG 83 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~l~-s~~~---d~~v~vwd~~~~ 83 (183)
..+..++|+|+.+++.......- ..+..+.... .....+..+.+.......++++.|+ .... .+.|.++|+.+.
T Consensus 236 ~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~ 315 (693)
T 3iuj_A 236 YVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANP 315 (693)
T ss_dssp EEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSC
T ss_pred EEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 46788999999887765322211 1111122222 2445666676666665333455654 4433 367999998765
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe-CCC--eEEEEeCCCCCcceEEec-cCCCcEEEEEecCC-cEEE
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS-FDN--SVKLWDLRSPKVPLFDML-GHEDKVMCVNWSDY-RYIM 158 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg--~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~l~ 158 (183)
.... ...+..|...+. .|++ +++.|+... .++ .|++||+.... ...+. .....+..+.++++ ..++
T Consensus 316 ~~~~----~~~l~~~~~~~~--~~s~-~g~~lv~~~~~~g~~~l~~~d~~g~~--~~~l~~p~~~~~~~~~~~~d~~~l~ 386 (693)
T 3iuj_A 316 GPAH----WRDLIPERQQVL--TVHS-GSGYLFAEYMVDATARVEQFDYEGKR--VREVALPGLGSVSGFNGKHDDPALY 386 (693)
T ss_dssp CGGG----CEEEECCCSSCE--EEEE-ETTEEEEEEEETTEEEEEEECTTSCE--EEEECCSSSSEEEECCCCTTCSCEE
T ss_pred Cccc----cEEEecCCCCEE--EEEE-ECCEEEEEEEECCeeEEEEEECCCCe--eEEeecCCCceEEeeecCCCCCEEE
Confidence 4311 124455655555 8888 555555544 454 68899987543 23332 34456667777743 4443
Q ss_pred EecCC----CcEEEEEecCCC
Q psy2113 159 SGGQD----NSVRVFKTKHQP 175 (183)
Q Consensus 159 ~~~~d----g~i~iwd~~~~~ 175 (183)
....+ +.|..||+.+++
T Consensus 387 ~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 387 FGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEECSSSCCEEEEECTTTCC
T ss_pred EEecCCCCCCEEEEEECCCCe
Confidence 33333 678889887654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=3e-07 Score=66.56 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=60.3
Q ss_pred cccCccceEEEeccCCCeeEEEEccCC-eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCc-ceEE-EEEecCCCCE
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVD-EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE-WVQS-VRWSPIDPQL 114 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~-~v~~-~~~~p~~~~~ 114 (183)
+..+++.+..+.. +.+.+..+..++ .+++++.|+.++.||..+++. ......+.. .+.+ ..+. .+..
T Consensus 25 d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~------~w~~~~~~~~~~~~sp~~~--~~~~ 94 (369)
T 2hz6_A 25 SKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG------LTKLPFTIPELVQASPCRS--SDGI 94 (369)
T ss_dssp ETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC------SEECSCCHHHHHTTCSCC-------
T ss_pred ECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce------eeeeeccCccccccCceEe--cCCE
Confidence 3446666666665 455554445555 467778999999999987664 222221111 1100 0011 2346
Q ss_pred EEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 115 FVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 115 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+++++.|+.++.||.++++. ...+..+.. ..++ .+..+++++.|+.|+.||.++++..-
T Consensus 95 v~~g~~dg~v~a~D~~tG~~-~w~~~~~~~----~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 95 LYMGKKQDIWYVIDLLTGEK-QQTLSSAFA----DSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred EEEEeCCCEEEEEECCCCcE-EEEecCCCc----ccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 77788899999999999875 444433321 2233 34788889999999999999887543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.001 Score=48.15 Aligned_cols=150 Identities=8% Similarity=-0.037 Sum_probs=83.1
Q ss_pred EEEEeecCcEEEEEEeccCC------CC-cccccccCccceEEEecc-------CCCeeEEEEccCCe-EEEEeC--CCe
Q psy2113 12 GVIFMTVGALLTLTNIEVTS------LP-SFFQLILQKTPLITLKGH-------KEAISAVQWTAVDE-IITSSW--DHT 74 (183)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~-l~s~~~--d~~ 74 (183)
.++|+|+++.+.+.+-.... -. ....+....+.+..+..- ...-..+.|+|+++ |+.+.. ++.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~ 149 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA 149 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence 89999999998887621000 00 001122234444443321 12345789999887 555553 578
Q ss_pred EEEEEcCCCCCccCceeEEE-eecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec-----cCCCcE-E
Q psy2113 75 LKIWDAELGGMKKGAIVKST-FSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML-----GHEDKV-M 147 (183)
Q Consensus 75 v~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~v-~ 147 (183)
|.++| .+++. ... +. ... ++.+.|...+.+++.+.||.+.++|. +++. ..... ....++ .
T Consensus 150 v~viD-~t~~~------~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~-~~~~~~~~~~~~~~p~~~ 216 (373)
T 2mad_H 150 VGLVV-QGGSS------DDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA-AGAGLVGAMLTAAQNLLT 216 (373)
T ss_pred EEEEE-CCCCE------EeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcE-EEEEeccccccCCcceee
Confidence 99999 87664 223 22 111 24556645567777888999999999 7664 31211 111121 2
Q ss_pred EEEecC-CcEEEEecCCCcEEEEEecCC
Q psy2113 148 CVNWSD-YRYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 148 ~~~~~~-~~~l~~~~~dg~i~iwd~~~~ 174 (183)
...+.+ +..++..+.++.+.+.|+...
T Consensus 217 ~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 217 QPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred cceeEecCCEEEEEcCCceEEEEeccCC
Confidence 233442 233333346778888887643
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=97.98 E-value=7.1e-05 Score=54.38 Aligned_cols=95 Identities=12% Similarity=-0.034 Sum_probs=66.2
Q ss_pred CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe----------CCCeEEEEeCCCCCcceEEecc
Q psy2113 72 DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS----------FDNSVKLWDLRSPKVPLFDMLG 141 (183)
Q Consensus 72 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~ 141 (183)
++.|.+.|..+.+. ...+.....+ . +.++| +++.++.+. .++.|.+||..+.+. +..+.-
T Consensus 58 ~~~V~ViD~~t~~v------~~~I~vG~~P-~-va~sp-DG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v-~~~I~v 127 (386)
T 3sjl_D 58 VTQQFVIDGEAGRV------IGMIDGGFLP-N-PVVAD-DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLP-TADIEL 127 (386)
T ss_dssp SEEEEEEETTTTEE------EEEEEECSSC-E-EEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEEE
T ss_pred CCEEEEEECCCCeE------EEEEECCCCC-c-EEECC-CCCEEEEEcccccccccCCCCCEEEEEECCCCeE-EEEEEC
Confidence 67999999988765 4445443444 4 99999 676665554 367899999999875 444321
Q ss_pred C-------CCcEEEEEecCC-cEEEEecC--CCcEEEEEecCCCC
Q psy2113 142 H-------EDKVMCVNWSDY-RYIMSGGQ--DNSVRVFKTKHQPK 176 (183)
Q Consensus 142 ~-------~~~v~~~~~~~~-~~l~~~~~--dg~i~iwd~~~~~~ 176 (183)
. ......+.++|+ ++++++.. ++.|.++|+.+.+.
T Consensus 128 ~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~v 172 (386)
T 3sjl_D 128 PDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 172 (386)
T ss_dssp TTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred CCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcE
Confidence 1 124567899965 77776653 68999999988764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00015 Score=51.00 Aligned_cols=125 Identities=11% Similarity=0.023 Sum_probs=77.5
Q ss_pred CccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC
Q psy2113 41 QKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
..+.+.........+.++...+++.+..++.++.+..+|.. +.. ...+......+..+...+ ++ .+..++.
T Consensus 203 ~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~-g~~------~~~~~~~~~~~~~~~~~~-~g-~l~v~t~ 273 (330)
T 3hxj_A 203 DGTEKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPD-GTE------KWRFKTGKRIESSPVIGN-TD-TIYFGSY 273 (330)
T ss_dssp TSCEEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECTT-SCE------EEEEECSSCCCSCCEECT-TS-CEEEECT
T ss_pred CCcEEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECCC-CCE------eEEeeCCCCccccceEcC-CC-eEEEecC
Confidence 33444455445566778888888888888888888888743 222 233333333334455554 44 5666777
Q ss_pred CCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 121 DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 121 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+|.+..+|. +++. ..........+.++...++..|..++.+|.+++...+..+.
T Consensus 274 ~ggl~~~d~-~g~~-~~~~~~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 274 DGHLYAINP-DGTE-KWNFETGSWIIATPVIDENGTIYFGTRNGKFYALFNLEHHH 327 (330)
T ss_dssp TCEEEEECT-TSCE-EEEEECSSCCCSCCEECTTCCEEEECTTSCEEEEEC-----
T ss_pred CCCEEEECC-CCcE-EEEEEcCCccccceEEcCCCEEEEEcCCCeEEEEecccccc
Confidence 889999996 5553 44444444556667776667788899999999987665443
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0016 Score=44.63 Aligned_cols=152 Identities=13% Similarity=0.064 Sum_probs=87.6
Q ss_pred eeEEEEEeecCcEEEEEEecc-CCCCcccccccCccceEEEeccCCCeeE--EEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEV-TSLPSFFQLILQKTPLITLKGHKEAISA--VQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~--~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
.+-++.|+ ++.++....... ..+. ..+..+++.+..+.... ..+. +.... ++ +++.-.++.+.++|..+.+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~--~vD~~Tgkv~~~~~l~~-~~FgeGit~~g-~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIR--KVDIESGKTLQQIELGK-RYFGEGISDWK-DKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEE--EECTTTCCEEEEEECCT-TCCEEEEEEET-TEEEEEESSSSEEEEEETTTCC
T ss_pred ccceEEEE-CCEEEEECCCCCCceEE--EEECCCCcEEEEEecCC-ccceeEEEEeC-CEEEEEEeeCCEEEEEECccCc
Confidence 34678887 565554443210 0010 11344556666655433 3333 44433 45 4455568999999998877
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc----CC-CcEEEEEecCCcEEEE
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG----HE-DKVMCVNWSDYRYIMS 159 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~~-~~v~~~~~~~~~~l~~ 159 (183)
. ...+... ..-..+ ++ ++..++....++.|.++|..+.+. ...+.- .. ..++.+.|.++...+.
T Consensus 119 ~------~~ti~~~-~eG~gl--t~-dg~~L~~SdGs~~i~~iDp~T~~v-~~~I~V~~~g~~~~~lNELe~~~G~lyan 187 (262)
T 3nol_A 119 Q------VRSFNYD-GEGWGL--TH-NDQYLIMSDGTPVLRFLDPESLTP-VRTITVTAHGEELPELNELEWVDGEIFAN 187 (262)
T ss_dssp E------EEEEECS-SCCCCE--EE-CSSCEEECCSSSEEEEECTTTCSE-EEEEECEETTEECCCEEEEEEETTEEEEE
T ss_pred E------EEEEECC-CCceEE--ec-CCCEEEEECCCCeEEEEcCCCCeE-EEEEEeccCCccccccceeEEECCEEEEE
Confidence 5 4444322 222333 35 445555555578899999998875 333322 11 3356678887666666
Q ss_pred ecCCCcEEEEEecCCCC
Q psy2113 160 GGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 160 ~~~dg~i~iwd~~~~~~ 176 (183)
...+..|.+.|+++++.
T Consensus 188 ~w~~~~I~vIDp~tG~V 204 (262)
T 3nol_A 188 VWQTNKIVRIDPETGKV 204 (262)
T ss_dssp ETTSSEEEEECTTTCBE
T ss_pred EccCCeEEEEECCCCcE
Confidence 66788899999887764
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00051 Score=48.06 Aligned_cols=106 Identities=8% Similarity=0.090 Sum_probs=72.1
Q ss_pred ccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe
Q psy2113 42 KTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS 119 (183)
Q Consensus 42 ~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 119 (183)
...+..+........+..|++++. +++...++.|..|+.. +. ...+..+...+..++++| +++++++..
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-------~~~~~~~~~~~~gl~~d~-dG~l~v~~~ 104 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-------VDVLLDATAFTNGNAVDA-QQRLVHCEH 104 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-------EEEEEESCSCEEEEEECT-TSCEEEEET
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-------EEEEeCCCCccceeeECC-CCCEEEEEC
Confidence 344556666667788999998765 6677788999999873 33 233444667789999999 788777666
Q ss_pred CCCeEEEEeCCCCCcceEEeccC-----CCcEEEEEecCC-cEEEE
Q psy2113 120 FDNSVKLWDLRSPKVPLFDMLGH-----EDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 120 ~dg~i~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~-~~l~~ 159 (183)
.++.|.+|+.. ++. ..+..+ ...++.+++.++ .++++
T Consensus 105 ~~~~v~~~~~~-g~~--~~~~~~~~~~~~~~~~~i~~d~dG~l~~t 147 (305)
T 3dr2_A 105 GRRAITRSDAD-GQA--HLLVGRYAGKRLNSPNDLIVARDGAIWFT 147 (305)
T ss_dssp TTTEEEEECTT-SCE--EEEECEETTEECSCCCCEEECTTSCEEEE
T ss_pred CCCEEEEECCC-CCE--EEEEeccCCCccCCCCCEEECCCCCEEEe
Confidence 66889999986 442 222211 134677889865 55555
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0019 Score=44.24 Aligned_cols=156 Identities=8% Similarity=0.010 Sum_probs=88.3
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEE-eccCCCeeEEEEcc-CCeEEEEeC---CCeEEEEEcCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITL-KGHKEAISAVQWTA-VDEIITSSW---DHTLKIWDAELG 83 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~-~~~l~s~~~---d~~v~vwd~~~~ 83 (183)
...++++++++..+...+.....+..+.. .......+ .........+++.| ++.|..+.. .+.|..+++...
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~---~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~ 156 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKM---DGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT 156 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEET---TSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEc---CCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC
Confidence 34678888876666655522111111111 11111222 22224568899998 566554443 468888887643
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQD 163 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d 163 (183)
.. .......-.....++++|+++.++++-...+.|.++|...... ..... .......++...+..+++...+
T Consensus 157 ~~------~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~-~~~~P~gi~~d~~~lyva~~~~ 228 (267)
T 1npe_A 157 NR------RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLE-GLQYPFAVTSYGKNLYYTDWKT 228 (267)
T ss_dssp CC------EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEE-CCCSEEEEEEETTEEEEEETTT
T ss_pred Cc------EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce-EEEec-CCCCceEEEEeCCEEEEEECCC
Confidence 32 1111122345789999994445556666678999999975432 22222 2234466766654555666667
Q ss_pred CcEEEEEecCCC
Q psy2113 164 NSVRVFKTKHQP 175 (183)
Q Consensus 164 g~i~iwd~~~~~ 175 (183)
+.|..+|..+++
T Consensus 229 ~~v~~~d~~~g~ 240 (267)
T 1npe_A 229 NSVIAMDLAISK 240 (267)
T ss_dssp TEEEEEETTTTE
T ss_pred CeEEEEeCCCCC
Confidence 899999987654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00031 Score=48.26 Aligned_cols=121 Identities=6% Similarity=-0.023 Sum_probs=77.3
Q ss_pred ceEEEeccCCC--eeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC
Q psy2113 44 PLITLKGHKEA--ISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD 121 (183)
Q Consensus 44 ~~~~~~~h~~~--v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d 121 (183)
.+.++ .|... ...+.|..+..+.+.+.++.|+++|+++++... .+......--.+++. +..+.+..-.+
T Consensus 45 Vv~~~-phd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~------~~l~~~~FgeGit~~--g~~Ly~ltw~~ 115 (268)
T 3nok_A 45 IIREY-PHATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVW------MERLGNIFAEGLASD--GERLYQLTWTE 115 (268)
T ss_dssp EEEEE-ECCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSE------EEECTTCCEEEEEEC--SSCEEEEESSS
T ss_pred EEEEE-cCCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEe------EECCCCcceeEEEEe--CCEEEEEEccC
Confidence 34455 34433 468888754446788888999999999887632 221111112334443 34566666678
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+.+.+||..+.+. +..+.. ...-..+++.. ..|+.+..++.|.++|..+.+.
T Consensus 116 ~~v~V~D~~Tl~~-~~ti~~-~~eGwGLt~Dg-~~L~vSdGs~~l~~iDp~T~~v 167 (268)
T 3nok_A 116 GLLFTWSGMPPQR-ERTTRY-SGEGWGLCYWN-GKLVRSDGGTMLTFHEPDGFAL 167 (268)
T ss_dssp CEEEEEETTTTEE-EEEEEC-SSCCCCEEEET-TEEEEECSSSEEEEECTTTCCE
T ss_pred CEEEEEECCcCcE-EEEEeC-CCceeEEecCC-CEEEEECCCCEEEEEcCCCCeE
Confidence 9999999999875 555543 23335555543 5555555688999999888654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00034 Score=49.93 Aligned_cols=121 Identities=7% Similarity=0.005 Sum_probs=73.7
Q ss_pred CCeeEEEEccCCeE-EEEe--CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-----CCeE
Q psy2113 53 EAISAVQWTAVDEI-ITSS--WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-----DNSV 124 (183)
Q Consensus 53 ~~v~~~~~~~~~~l-~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-----dg~i 124 (183)
.....+++++++++ ++.. .++.++||.+.+++...-.........+-..+..++++| +++++++-.. ++.|
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~-~g~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDG-NGIVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECS-SSEEEEEECHHHHTSCCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcC-CCcEEEEcCCCCcCCCCeE
Confidence 67889999988875 4533 234356666643221100000001123456799999999 7777666543 5799
Q ss_pred EEEeCCCCCcceEEecc------CCCcEEEEEecC-CcE-EEEec---CCCcEEEEEecCCC
Q psy2113 125 KLWDLRSPKVPLFDMLG------HEDKVMCVNWSD-YRY-IMSGG---QDNSVRVFKTKHQP 175 (183)
Q Consensus 125 ~vwd~~~~~~~~~~~~~------~~~~v~~~~~~~-~~~-l~~~~---~dg~i~iwd~~~~~ 175 (183)
.+||+.+++. ...+.. +...+..+++++ +.. +++.. .++.|.+||+.+++
T Consensus 96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 9999998763 333321 223568899984 344 45555 67899999987653
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0014 Score=51.21 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=38.7
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
|.|..||+.+++. +-... +..++....+. .+..++.++.||.+++||.++++..
T Consensus 457 g~l~A~D~~tG~~-~W~~~-~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 457 GRLLAWDPVAQKA-AWSVE-HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEEEEEETTTTEE-EEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cEEEEEeCCCCcE-EeecC-CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 7899999999875 33332 33334443344 5578888999999999999988754
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0027 Score=49.82 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=39.4
Q ss_pred CCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 121 DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 121 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+|.|..||+.+++. +-....+. ++..-.+. .+.+++.++.||.|+.||.++++..
T Consensus 454 ~g~l~A~D~~tG~~-~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 454 SGKLIAWDPVKQQA-AWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp EEEEEEEETTTTEE-EEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ceeEEEEECCCCCe-EeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 37899999999875 44443332 23322333 5688999999999999999998764
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0023 Score=43.41 Aligned_cols=121 Identities=7% Similarity=-0.009 Sum_probs=75.1
Q ss_pred ceEEEeccCC--CeeEEEEccCCeEEEEeCC--CeEEEEEcCCCCCccCceeEEEeecCCcc-eEEEEEecCCCCEEEEE
Q psy2113 44 PLITLKGHKE--AISAVQWTAVDEIITSSWD--HTLKIWDAELGGMKKGAIVKSTFSSHKEW-VQSVRWSPIDPQLFVSA 118 (183)
Q Consensus 44 ~~~~~~~h~~--~v~~~~~~~~~~l~s~~~d--~~v~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~ 118 (183)
.+.++ .|.. -...+.|+++..+.+.+.+ ..|+++|+.+++. .......... --.++.. +..+....
T Consensus 11 v~~~~-phd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv------~~~~~l~~~~fgeGi~~~--~~~ly~lt 81 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRI------LQRAEVPPPYFGAGIVAW--RDRLIQLT 81 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCE------EEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred EEEEc-CCCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCE------EEEEeCCCCcceeEEEEe--CCEEEEEE
Confidence 34455 4544 3568999873335666665 4899999998875 3333222211 1234443 44566666
Q ss_pred eCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 119 SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 119 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
-.++.+.++|..+.+. +..+... ..-..+++.. ..|+.+..++.|.++|..+.+.
T Consensus 82 w~~~~v~v~D~~tl~~-~~ti~~~-~~Gwglt~dg-~~L~vSdgs~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 82 WRNHEGFVYDLATLTP-RARFRYP-GEGWALTSDD-SHLYMSDGTAVIRKLDPDTLQQ 136 (243)
T ss_dssp SSSSEEEEEETTTTEE-EEEEECS-SCCCEEEECS-SCEEEECSSSEEEEECTTTCCE
T ss_pred eeCCEEEEEECCcCcE-EEEEeCC-CCceEEeeCC-CEEEEECCCCeEEEEeCCCCeE
Confidence 6789999999999875 5555432 2335666544 4444445688999999887654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00086 Score=49.45 Aligned_cols=124 Identities=10% Similarity=-0.068 Sum_probs=78.2
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCe-EEEEe----------CCCeEEEEEcCCCCCccCceeEEEeecC-------C
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDE-IITSS----------WDHTLKIWDAELGGMKKGAIVKSTFSSH-------K 99 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~~~~~~-------~ 99 (183)
+..+.+.+.++..-..+ .+.++|+++ ++.+. .++.|.++|..+.+. ...+.-. .
T Consensus 105 D~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v------v~~I~v~g~~r~~~g 176 (426)
T 3c75_H 105 DGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP------IADIELPDAPRFLVG 176 (426)
T ss_dssp ETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE------EEEEEETTCCCCCBS
T ss_pred ECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE------EEEEECCCccccccC
Confidence 34566667777655556 899999887 54443 467899999988765 3333211 1
Q ss_pred cceEEEEEecCCCCEEEEEeC--CCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecC
Q psy2113 100 EWVQSVRWSPIDPQLFVSASF--DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 100 ~~v~~~~~~p~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~ 173 (183)
.....+.++| ++++++.+.. ++.|.+.|+.+.+. +..+.-.. ...+.......+++.+.||++.+.+..+
T Consensus 177 ~~P~~~~~sp-DGk~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 177 TYQWMNALTP-DNKNLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD--CYHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp CCGGGSEECT-TSSEEEEEECSSSCEEEEEETTTTEE-EEEEECCS--EEEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred CCcceEEEcC-CCCEEEEEecCCCCeEEEEECCCCeE-EEEEEcCC--ceeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 2346789999 7777777663 57899999999875 44443211 1111111225566666777777777633
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00046 Score=48.45 Aligned_cols=116 Identities=14% Similarity=0.093 Sum_probs=72.3
Q ss_pred cceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 43 TPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
+...........+.++...+++.+..++.++.+..+|.. ++. ...+......+.++...+ ++.+++.. +
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~g~l~vgt~~~~l~~~d~~-g~~------~~~~~~~~~~~~~~~~d~-~g~l~v~t---~ 195 (330)
T 3hxj_A 127 TEKWRFKTKKAIYATPIVSEDGTIYVGSNDNYLYAINPD-GTE------KWRFKTNDAITSAASIGK-DGTIYFGS---D 195 (330)
T ss_dssp CEEEEEECSSCCCSCCEECTTSCEEEECTTSEEEEECTT-SCE------EEEEECSSCCCSCCEECT-TCCEEEES---S
T ss_pred CEEEEEcCCCceeeeeEEcCCCEEEEEcCCCEEEEECCC-CCE------eEEEecCCCceeeeEEcC-CCEEEEEe---C
Confidence 344444444555666666677888888888999999987 443 333333444566666666 55554443 7
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEe
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~ 171 (183)
.+..+| .+++. ..........+.++...++..+..++.++.|..+|.
T Consensus 196 ~l~~~d-~~g~~-~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 196 KVYAIN-PDGTE-KWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP 242 (330)
T ss_dssp SEEEEC-TTSCE-EEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT
T ss_pred EEEEEC-CCCcE-EEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC
Confidence 788888 55553 334444445566667766556666777777777763
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.0046 Score=42.61 Aligned_cols=123 Identities=7% Similarity=0.077 Sum_probs=76.3
Q ss_pred cceEEEeccCC--CeeEEEEccCCeEEEEe-C--CCeEEEEEcCCCCCccCceeEEEeec-CCcceEEEEEecCCCCEEE
Q psy2113 43 TPLITLKGHKE--AISAVQWTAVDEIITSS-W--DHTLKIWDAELGGMKKGAIVKSTFSS-HKEWVQSVRWSPIDPQLFV 116 (183)
Q Consensus 43 ~~~~~~~~h~~--~v~~~~~~~~~~l~s~~-~--d~~v~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~ 116 (183)
+.+.++. |.. ....+.|++++.|..++ . ++.|++.|+.+++. ...+.- .......+++. +..+.+
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v------~~~i~l~~~~fgeGi~~~--g~~lyv 80 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV------ENIHKMDDSYFGEGLTLL--NEKLYQ 80 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE------EEEEECCTTCCEEEEEEE--TTEEEE
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE------EEEEecCCCcceEEEEEe--CCEEEE
Confidence 3445553 443 35799999877765543 3 58999999998875 333321 11223345554 345666
Q ss_pred EEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 117 SASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+.-.++.+.++|..+.+. +..+......-..+.+. ++.++.+..++.|.++|..+.+.
T Consensus 81 ~t~~~~~v~viD~~t~~v-~~~i~~g~~~g~glt~D-g~~l~vs~gs~~l~viD~~t~~v 138 (266)
T 2iwa_A 81 VVWLKNIGFIYDRRTLSN-IKNFTHQMKDGWGLATD-GKILYGSDGTSILYEIDPHTFKL 138 (266)
T ss_dssp EETTCSEEEEEETTTTEE-EEEEECCSSSCCEEEEC-SSSEEEECSSSEEEEECTTTCCE
T ss_pred EEecCCEEEEEECCCCcE-EEEEECCCCCeEEEEEC-CCEEEEECCCCeEEEEECCCCcE
Confidence 666789999999998775 44443221233445554 44444455688999999887653
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0028 Score=43.47 Aligned_cols=119 Identities=7% Similarity=0.055 Sum_probs=74.4
Q ss_pred ceEEEeccCCC--eeEEEEccCCe-EEEEeCCC--eEEEEEcCCCCCccCceeEEEeecCCcceE--EEEEecCCCCEEE
Q psy2113 44 PLITLKGHKEA--ISAVQWTAVDE-IITSSWDH--TLKIWDAELGGMKKGAIVKSTFSSHKEWVQ--SVRWSPIDPQLFV 116 (183)
Q Consensus 44 ~~~~~~~h~~~--v~~~~~~~~~~-l~s~~~d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~--~~~~~p~~~~~l~ 116 (183)
.+.++ .|... ...|.|+ ++. +.+.+.+| .|+++|+.+++. ...+... .... .+... +..+.+
T Consensus 33 vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv------~~~~~l~-~~~FgeGit~~--g~~ly~ 101 (262)
T 3nol_A 33 IVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT------LQQIELG-KRYFGEGISDW--KDKIVG 101 (262)
T ss_dssp EEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE------EEEEECC-TTCCEEEEEEE--TTEEEE
T ss_pred EEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE------EEEEecC-CccceeEEEEe--CCEEEE
Confidence 34455 35443 4788998 456 55666665 899999998875 3333322 2232 34443 345555
Q ss_pred EEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 117 SASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
..-.++.+.++|..+.+. +..+... ..-..+++. +..|+.+..++.|.++|..+.+.
T Consensus 102 ltw~~~~v~v~D~~t~~~-~~ti~~~-~eG~glt~d-g~~L~~SdGs~~i~~iDp~T~~v 158 (262)
T 3nol_A 102 LTWKNGLGFVWNIRNLRQ-VRSFNYD-GEGWGLTHN-DQYLIMSDGTPVLRFLDPESLTP 158 (262)
T ss_dssp EESSSSEEEEEETTTCCE-EEEEECS-SCCCCEEEC-SSCEEECCSSSEEEEECTTTCSE
T ss_pred EEeeCCEEEEEECccCcE-EEEEECC-CCceEEecC-CCEEEEECCCCeEEEEcCCCCeE
Confidence 555689999999999886 5555432 233455544 45555555578899999887653
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.008 Score=47.62 Aligned_cols=157 Identities=10% Similarity=0.009 Sum_probs=83.3
Q ss_pred eeEEEEEe-ecCcEEEEEEeccCCCC--cccccccCc-cce-EEEeccCCCeeEEEEccCCe-EEEEeCC-----CeEEE
Q psy2113 9 LTLGVIFM-TVGALLTLTNIEVTSLP--SFFQLILQK-TPL-ITLKGHKEAISAVQWTAVDE-IITSSWD-----HTLKI 77 (183)
Q Consensus 9 ~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~-~~~~~h~~~v~~~~~~~~~~-l~s~~~d-----~~v~v 77 (183)
...+..|| |+|..++...-..-.-. ....+...+ +.+ ..+.. ....+.|+|+++ |+....+ ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 44567899 99998886542211100 011122222 111 01111 134688998875 5555444 36778
Q ss_pred EEcCCCCCccCceeEEEee-cCCcceEEEEEecCCCCEEEEEeC---CCeEEEEeCCCCCcce--EEe-ccCCCcEEEEE
Q psy2113 78 WDAELGGMKKGAIVKSTFS-SHKEWVQSVRWSPIDPQLFVSASF---DNSVKLWDLRSPKVPL--FDM-LGHEDKVMCVN 150 (183)
Q Consensus 78 wd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~---dg~i~vwd~~~~~~~~--~~~-~~~~~~v~~~~ 150 (183)
+++.+..... ...+. ........+.|+| ++++|+..+. ...|+++|+.++.... ..+ ........++.
T Consensus 252 ~~lgt~~~~~----~lv~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~ 326 (751)
T 2xe4_A 252 HVMGKLQSED----VCLYEEHNPLFSAFMYKAA-DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ 326 (751)
T ss_dssp EETTSCGGGC----EEEEECCCTTCEEEEEECT-TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred EECCCCchhc----EEEEecCCCceEEEEEECC-CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence 8876643211 11222 2234467889999 7776665442 3468889998763212 333 33445667787
Q ss_pred ecCCc-EEEEecCC--C--cEEEEEecC
Q psy2113 151 WSDYR-YIMSGGQD--N--SVRVFKTKH 173 (183)
Q Consensus 151 ~~~~~-~l~~~~~d--g--~i~iwd~~~ 173 (183)
|+.+. +++....+ + .|..+|+.+
T Consensus 327 ~~~g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 327 MHGTSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp EETTTEEEEEECTTTCTTCEEEEEETTS
T ss_pred eeeCCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 77664 44444443 2 566666654
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00073 Score=49.99 Aligned_cols=153 Identities=9% Similarity=0.049 Sum_probs=90.3
Q ss_pred EEEEe--ecCcEEEEEEeccCCCCcccc--cccCccceEEEe-------ccCCCeeEEEEccCCeEEEEeCC------Ce
Q psy2113 12 GVIFM--TVGALLTLTNIEVTSLPSFFQ--LILQKTPLITLK-------GHKEAISAVQWTAVDEIITSSWD------HT 74 (183)
Q Consensus 12 ~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------~h~~~v~~~~~~~~~~l~s~~~d------~~ 74 (183)
+.+++ ++++.+.+.++..-.+..+.. +....+....++ .....-..+...|++.++++..+ +.
T Consensus 86 ~~~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 86 CPNGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGG 165 (462)
T ss_dssp STTCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCE
T ss_pred ccccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCe
Confidence 33556 788888887755433333221 122234444442 01113345667788866665555 78
Q ss_pred EEEEEcCCCCCccCceeEEEeec--C-CcceEEEEEecCCCCEEEEEe-------------------CCCeEEEEeCCCC
Q psy2113 75 LKIWDAELGGMKKGAIVKSTFSS--H-KEWVQSVRWSPIDPQLFVSAS-------------------FDNSVKLWDLRSP 132 (183)
Q Consensus 75 v~vwd~~~~~~~~~~~~~~~~~~--~-~~~v~~~~~~p~~~~~l~~~~-------------------~dg~i~vwd~~~~ 132 (183)
+.+.|..+.+. ...+.. . ...-..+.|+| +.+.+++.. .+..|.+||+.+.
T Consensus 166 v~vlD~~T~~v------~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 166 ILMLDHYSFEP------LGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp EEEECTTTCCE------EEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred EEEEECCCCeE------EEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 99999987765 333331 1 12245688899 777777774 3689999999986
Q ss_pred CcceEEeccC--CCcEEEEEe--cCC-cEEEEec------CCCcEEEEEec
Q psy2113 133 KVPLFDMLGH--EDKVMCVNW--SDY-RYIMSGG------QDNSVRVFKTK 172 (183)
Q Consensus 133 ~~~~~~~~~~--~~~v~~~~~--~~~-~~l~~~~------~dg~i~iwd~~ 172 (183)
+. +..+..- ......+.| +|+ .++++++ .+++|.+|...
T Consensus 239 k~-~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d 288 (462)
T 2ece_A 239 KR-IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE 288 (462)
T ss_dssp EE-EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE
T ss_pred cE-eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec
Confidence 54 4444432 134556666 665 6666555 56678765543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00044 Score=50.97 Aligned_cols=94 Identities=12% Similarity=-0.029 Sum_probs=65.7
Q ss_pred CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe----------CCCeEEEEeCCCCCcceEEeccC
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS----------FDNSVKLWDLRSPKVPLFDMLGH 142 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~ 142 (183)
+.|.+.|..+.+. ...+.....+ .+.++| +++.++.+. .++.|.++|..+.+. +..+.-.
T Consensus 99 ~~VsVID~~t~~v------v~~I~vG~~P--gia~Sp-Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v-v~~I~v~ 168 (426)
T 3c75_H 99 TQQFVIDGSTGRI------LGMTDGGFLP--HPVAAE-DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP-IADIELP 168 (426)
T ss_dssp EEEEEEETTTTEE------EEEEEECSSC--EEEECT-TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE-EEEEEET
T ss_pred CeEEEEECCCCEE------EEEEECCCCC--ceEECC-CCCEEEEEeccccccccCCCCCEEEEEECCCCcE-EEEEECC
Confidence 7999999988765 4455433444 899999 666555554 467899999999875 4443211
Q ss_pred -------CCcEEEEEecCC-cEEEEecC--CCcEEEEEecCCCC
Q psy2113 143 -------EDKVMCVNWSDY-RYIMSGGQ--DNSVRVFKTKHQPK 176 (183)
Q Consensus 143 -------~~~v~~~~~~~~-~~l~~~~~--dg~i~iwd~~~~~~ 176 (183)
......+.++|+ ++++.+.. ++.|.+.|+.+.+.
T Consensus 169 g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kv 212 (426)
T 3c75_H 169 DAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTF 212 (426)
T ss_dssp TCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred CccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeE
Confidence 123467889965 77777653 67899999988754
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0074 Score=41.47 Aligned_cols=125 Identities=6% Similarity=-0.125 Sum_probs=78.0
Q ss_pred ccCccceEEEeccCCCee--EEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEE
Q psy2113 39 ILQKTPLITLKGHKEAIS--AVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 116 (183)
Q Consensus 39 ~~~~~~~~~~~~h~~~v~--~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 116 (183)
..+++.+..+ - ....+ .+....+..++..-.++.+.++|..+.+. ...+.. ...-..++ + ++..|+
T Consensus 82 ~~Tgkv~~~~-l-~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~------~~ti~~-~~eGwGLt--~-Dg~~L~ 149 (268)
T 3nok_A 82 LESAQPVWME-R-LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQR------ERTTRY-SGEGWGLC--Y-WNGKLV 149 (268)
T ss_dssp SSCSSCSEEE-E-CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEE------EEEEEC-SSCCCCEE--E-ETTEEE
T ss_pred CCCCcEEeEE-C-CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcE------EEEEeC-CCceeEEe--c-CCCEEE
Confidence 3455555555 2 22333 35555444455666789999999988765 344432 22223444 4 455555
Q ss_pred EEeCCCeEEEEeCCCCCcceEEecc--CC---CcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 117 SASFDNSVKLWDLRSPKVPLFDMLG--HE---DKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
....++.|.++|..+.+. ...+.- +. ..++.+.|.++...+....+..|.+.|+++++.
T Consensus 150 vSdGs~~l~~iDp~T~~v-~~~I~V~~~g~~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V 213 (268)
T 3nok_A 150 RSDGGTMLTFHEPDGFAL-VGAVQVKLRGQPVELINELECANGVIYANIWHSSDVLEIDPATGTV 213 (268)
T ss_dssp EECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBE
T ss_pred EECCCCEEEEEcCCCCeE-EEEEEeCCCCcccccccccEEeCCEEEEEECCCCeEEEEeCCCCcE
Confidence 555688999999999875 433322 21 245778888776666666788999999888764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0074 Score=41.19 Aligned_cols=155 Identities=8% Similarity=0.064 Sum_probs=88.5
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccC-CeE-EEEeCCCeEEEEEcCCCCCcc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV-DEI-ITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~l-~s~~~d~~v~vwd~~~~~~~~ 87 (183)
..++++++++..+...+.....+..+. .........+.........+++.+. +.+ ++-...+.|.++++.....
T Consensus 38 ~~gi~~d~~~~~ly~~d~~~~~I~~~~--~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-- 113 (267)
T 1npe_A 38 IIGLAFDCVDKVVYWTDISEPSIGRAS--LHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-- 113 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEE--SSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred EEEEEEecCCCEEEEEECCCCEEEEEe--cCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence 357888987766666653221111111 1111111222222346789999874 554 4555678999999865332
Q ss_pred CceeEEEeecCCcceEEEEEecCCCCEEEEEeC--CCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcE-EEEecCC
Q psy2113 88 GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF--DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRY-IMSGGQD 163 (183)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~d 163 (183)
.............++++|+++.++++... .+.|..+++..... .............+++++ +.. .++-...
T Consensus 114 ----~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~~~~~~~~~~P~gia~d~~~~~lyv~d~~~ 188 (267)
T 1npe_A 114 ----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188 (267)
T ss_dssp ----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred ----EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-EEEEECCCCCCcEEEEcCCCCEEEEEECCC
Confidence 11122222457899999944544555433 46888888864332 222222334678999986 444 4556667
Q ss_pred CcEEEEEecC
Q psy2113 164 NSVRVFKTKH 173 (183)
Q Consensus 164 g~i~iwd~~~ 173 (183)
+.|..+|+..
T Consensus 189 ~~I~~~~~~g 198 (267)
T 1npe_A 189 HRAECLNPAQ 198 (267)
T ss_dssp TEEEEEETTE
T ss_pred CEEEEEecCC
Confidence 8899998764
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0052 Score=44.12 Aligned_cols=104 Identities=9% Similarity=0.020 Sum_probs=65.7
Q ss_pred cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc
Q psy2113 62 AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG 141 (183)
Q Consensus 62 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 141 (183)
.++.++.++.++.+..+|..+++. ................. +..++.++.++.+..+|.++++. .-....
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~------~W~~~~~~~~~~~p~~~---~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~ 171 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTV------AWQTKVAGEALSRPVVS---DGLVLIHTSNGQLQALNEADGAV-KWTVNL 171 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCE------EEEEECSSCCCSCCEEE---TTEEEEECTTSEEEEEETTTCCE-EEEEEC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE------EEEEeCCCceEcCCEEE---CCEEEEEcCCCeEEEEECCCCcE-EEEEeC
Confidence 567888899999999999988775 33333222111111222 33677788899999999999875 333322
Q ss_pred CCCcEE------EEEecCCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 142 HEDKVM------CVNWSDYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 142 ~~~~v~------~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
.. .+. ..... +..++.++.++.|..+|.++++..
T Consensus 172 ~~-~~~~~~~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~ 211 (376)
T 3q7m_A 172 DM-PSLSLRGESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMI 211 (376)
T ss_dssp CC------CCCCCCEEE-TTEEEECCTTTEEEEEETTTCCEE
T ss_pred CC-CceeecCCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEE
Confidence 21 111 11111 457788888999999998876543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0086 Score=40.63 Aligned_cols=153 Identities=10% Similarity=0.006 Sum_probs=86.3
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCe-eEEEEccCCe-EEEEeCCCeEEEEEcCCCCCcc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAI-SAVQWTAVDE-IITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~ 87 (183)
+-++.|+. +.++.......-+. ....+..+++.+..+....... ..+.... ++ +...-.++.+.++|..+.+.
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~-v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~~v~v~D~~tl~~-- 97 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSS-VRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNHEGFVYDLATLTP-- 97 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCE-EEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSSEEEEEETTTTEE--
T ss_pred cccEEEEC-CEEEEECCCCCCce-EEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCCEEEEEECCcCcE--
Confidence 45778876 44444433211000 0011344555555554333221 2344433 44 45556789999999988765
Q ss_pred CceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc--CC---CcEEEEEecCCcEEEEecC
Q psy2113 88 GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG--HE---DKVMCVNWSDYRYIMSGGQ 162 (183)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~---~~v~~~~~~~~~~l~~~~~ 162 (183)
...+... ..-..++ + ++..|+....++.|.++|..+.+. ...+.- +. ..++.+.|.++...+....
T Consensus 98 ----~~ti~~~-~~Gwglt--~-dg~~L~vSdgs~~l~~iDp~t~~~-~~~I~V~~~g~~~~~lNeLe~~~G~lyanvw~ 168 (243)
T 3mbr_X 98 ----RARFRYP-GEGWALT--S-DDSHLYMSDGTAVIRKLDPDTLQQ-VGSIKVTAGGRPLDNLNELEWVNGELLANVWL 168 (243)
T ss_dssp ----EEEEECS-SCCCEEE--E-CSSCEEEECSSSEEEEECTTTCCE-EEEEECEETTEECCCEEEEEEETTEEEEEETT
T ss_pred ----EEEEeCC-CCceEEe--e-CCCEEEEECCCCeEEEEeCCCCeE-EEEEEEccCCcccccceeeEEeCCEEEEEECC
Confidence 4444422 2223444 4 344444445688999999998875 333332 11 3456777877766666666
Q ss_pred CCcEEEEEecCCCC
Q psy2113 163 DNSVRVFKTKHQPK 176 (183)
Q Consensus 163 dg~i~iwd~~~~~~ 176 (183)
+..|.+.|+++++.
T Consensus 169 s~~I~vIDp~tG~V 182 (243)
T 3mbr_X 169 TSRIARIDPASGKV 182 (243)
T ss_dssp TTEEEEECTTTCBE
T ss_pred CCeEEEEECCCCCE
Confidence 77888888887754
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.005 Score=44.23 Aligned_cols=105 Identities=10% Similarity=-0.002 Sum_probs=67.1
Q ss_pred cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecC---------CcceE-EEEEecCCCCEEEEEeCCCeEEEEeCCC
Q psy2113 62 AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH---------KEWVQ-SVRWSPIDPQLFVSASFDNSVKLWDLRS 131 (183)
Q Consensus 62 ~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~---------~~~v~-~~~~~p~~~~~l~~~~~dg~i~vwd~~~ 131 (183)
.++.++.++.++.+..+|..+++. ....... ...+. .... .+..++.++.++.|..+|.++
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~------~W~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~~g~l~a~d~~t 122 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKE------IWSVSLAEKDGWFSKEPALLSGGVTV---SGGHVYIGSEKAQVYALNTSD 122 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCE------EEEEECCC---CCSCCCCCEEEEEEE---ETTEEEEEETTSEEEEEETTT
T ss_pred ECCEEEEEcCCCeEEEEEccCCce------eeeecCccccccccccCcccccCceE---eCCEEEEEcCCCEEEEEECCC
Confidence 357788888899999999988775 3333221 12222 2222 344677788899999999999
Q ss_pred CCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 132 PKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 132 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
++. .-............... +..++.++.++.|..+|.++++..
T Consensus 123 G~~-~W~~~~~~~~~~~p~~~-~~~v~v~~~~g~l~~~d~~tG~~~ 166 (376)
T 3q7m_A 123 GTV-AWQTKVAGEALSRPVVS-DGLVLIHTSNGQLQALNEADGAVK 166 (376)
T ss_dssp CCE-EEEEECSSCCCSCCEEE-TTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCE-EEEEeCCCceEcCCEEE-CCEEEEEcCCCeEEEEECCCCcEE
Confidence 885 33333222111111122 457888888999999998877643
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.018 Score=42.55 Aligned_cols=123 Identities=11% Similarity=0.139 Sum_probs=71.9
Q ss_pred eEEEeccCCCeeEEEEccCCe-EEEEeC-CC----eEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEE
Q psy2113 45 LITLKGHKEAISAVQWTAVDE-IITSSW-DH----TLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~-l~s~~~-d~----~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 118 (183)
+..+.........++|++++. |+.+.. ++ .+.+.+.. +.... ...+. .......++++|+++.++++-
T Consensus 171 v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~----~~~l~-~~~~p~giavdp~~g~lyv~d 244 (430)
T 3tc9_A 171 VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-SGFKV----ITELT-KGQNCNGAETHPINGELYFNS 244 (430)
T ss_dssp EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-GTSCS----EEEEE-ECSSCCCEEECTTTCCEEEEE
T ss_pred EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-Cceee----eeeec-cCCCceEEEEeCCCCEEEEEE
Confidence 334434455678999998776 555443 22 23334432 22211 11121 123457788999666677776
Q ss_pred eCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-c-EEEEecCCCcEEEEEecC
Q psy2113 119 SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-R-YIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 119 ~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~ 173 (183)
..++.|..++....................++|+++ + .+++-...+.|..++...
T Consensus 245 ~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 245 WNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp TTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 678899999998654211111122235688999965 5 455666778899988764
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00057 Score=49.43 Aligned_cols=98 Identities=11% Similarity=-0.143 Sum_probs=66.3
Q ss_pred EEEEeCCC----eEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe----------CCCeEEEEeCCC
Q psy2113 66 IITSSWDH----TLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS----------FDNSVKLWDLRS 131 (183)
Q Consensus 66 l~s~~~d~----~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~vwd~~~ 131 (183)
+++-..++ .|.+.|..+.+. ...+.....+ .+.++| ++..+..+. .++.|.+||..+
T Consensus 35 yV~~~~~~~~~d~vsvID~~t~~v------~~~i~vG~~P--~i~~sp-Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T 105 (368)
T 1mda_H 35 HITLPAYFAGTTENWVSCAGCGVT------LGHSLGAFLS--LAVAGH-SGSDFALASTSFARSAKGKRTDYVEVFDPVT 105 (368)
T ss_dssp EEEECTTTCSSEEEEEEETTTTEE------EEEEEECTTC--EEEECT-TSSCEEEEEEEETTTTSSSEEEEEEEECTTT
T ss_pred EEECCccCCccceEEEEECCCCeE------EEEEeCCCCC--ceEECC-CCCEEEEEcccccccccCCCCCEEEEEECCC
Confidence 45555455 888999988765 4455444444 799999 666666654 368999999999
Q ss_pred CCcceEEeccC-------CCcEEEEEecCC-cEEEEecC--CCcEEE--EEecC
Q psy2113 132 PKVPLFDMLGH-------EDKVMCVNWSDY-RYIMSGGQ--DNSVRV--FKTKH 173 (183)
Q Consensus 132 ~~~~~~~~~~~-------~~~v~~~~~~~~-~~l~~~~~--dg~i~i--wd~~~ 173 (183)
.+. +..+... ......+.++|+ ++++++.. +..+.+ +|+.+
T Consensus 106 ~~v-v~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 106 FLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp CCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred CCE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 886 5555322 123567889965 67776654 456888 88754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0011 Score=47.89 Aligned_cols=121 Identities=7% Similarity=-0.137 Sum_probs=76.7
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCe-EEEEe----------CCCeEEEEEcCCCCCccCceeEEEeecC-------C
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDE-IITSS----------WDHTLKIWDAELGGMKKGAIVKSTFSSH-------K 99 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~----------~d~~v~vwd~~~~~~~~~~~~~~~~~~~-------~ 99 (183)
+..+.+.+.++..-..+ .+.++|+++ ++.+. .++.|.+||..+.+. ...+... .
T Consensus 52 D~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v------v~~I~v~~~~~~~~g 123 (368)
T 1mda_H 52 CAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP------IADIELPDAPRFSVG 123 (368)
T ss_dssp ETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE------EEEEEETTSCSCCBS
T ss_pred ECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE------EEEEECCCccccccC
Confidence 44566777777666666 799999876 55543 468899999998775 3444322 1
Q ss_pred cceEEEEEecCCCCEEEEEeC--CCeEEE--EeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecC
Q psy2113 100 EWVQSVRWSPIDPQLFVSASF--DNSVKL--WDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 100 ~~v~~~~~~p~~~~~l~~~~~--dg~i~v--wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~ 173 (183)
.....+.++| ++++++.+.. +..+.+ +|..+ +..+..- +. ..+.......+++.+.||.+.+.|+.+
T Consensus 124 ~~P~~ia~Sp-DGk~lyVan~~~~~~v~V~~iD~~t----v~~i~v~-~~-~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 124 PRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD----DQLTKSA-SC-FHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp CCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE----EEEEECS-SC-CCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CCcceEEEcC-CCCEEEEEccCCCCeEEEEEEchhh----ceEEECC-Cc-eEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 2356899999 7777777654 457888 99977 2222211 11 111112224566677788888888776
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.022 Score=40.00 Aligned_cols=116 Identities=12% Similarity=0.034 Sum_probs=69.4
Q ss_pred CeeEEEEccCCe-EE-EEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC----------C
Q psy2113 54 AISAVQWTAVDE-II-TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF----------D 121 (183)
Q Consensus 54 ~v~~~~~~~~~~-l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~----------d 121 (183)
..+.+++++++. |+ +-...+.|.++++....... ...+....+ ...+++.+ +++++++... .
T Consensus 186 ~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~----~~~~~~~~g-P~gi~~d~-~G~l~va~~~~~~~~~~~~~~ 259 (322)
T 2fp8_A 186 VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT----AEVLVKIPN-PGNIKRNA-DGHFWVSSSEELDGNMHGRVD 259 (322)
T ss_dssp CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC----EEEEEECSS-EEEEEECT-TSCEEEEEEEETTSSTTSCEE
T ss_pred cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc----cceEEeCCC-CCCeEECC-CCCEEEEecCcccccccCCCc
Confidence 456789998865 44 44667899999987532211 111111223 67889999 7777776654 4
Q ss_pred CeEEEEeCCCCCcceEEeccC----CCcEEEEEecCCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGH----EDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+.|..+|.. ++. ...+... -..+..+.+..+.++++...++.|..+++......
T Consensus 260 ~~v~~~d~~-G~~-~~~~~~~~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~~~~~ 317 (322)
T 2fp8_A 260 PKGIKFDEF-GNI-LEVIPLPPPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDKKGNS 317 (322)
T ss_dssp EEEEEECTT-SCE-EEEEECCTTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC------
T ss_pred cEEEEECCC-CCE-EEEEECCCCCccccceEEEEeCCEEEEeecCCCceEEEecccccCc
Confidence 678888874 443 3333322 23466677765566666667889999998755443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.028 Score=40.85 Aligned_cols=154 Identities=7% Similarity=-0.005 Sum_probs=86.6
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEE-eccCCCeeEEEEcc-CCe-EEEEeCCCeEEEEEcCCCCCc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITL-KGHKEAISAVQWTA-VDE-IITSSWDHTLKIWDAELGGMK 86 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~-~~~-l~s~~~d~~v~vwd~~~~~~~ 86 (183)
..+++|.+....+...+.....+... .. .......+ .........+++.+ .+. +++-...+.|.+.++.....
T Consensus 118 ~~gl~~d~~~~~ly~~D~~~~~I~r~--~~-~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~- 193 (386)
T 3v65_B 118 AIALDFHHRRELVFWSDVTLDRILRA--NL-NGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR- 193 (386)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE--ET-TSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-
T ss_pred cEEEEEecCCCeEEEEeCCCCcEEEE--ec-CCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-
Confidence 45677877666655555322211111 11 11112222 22223456778774 455 45556677888888764432
Q ss_pred cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-CeEEEEeCCCCCcceEEeccCCCcEEEEEecC-C-cEEEEecCC
Q psy2113 87 KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-Y-RYIMSGGQD 163 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~d 163 (183)
...+...-.....+++.|.++.++.+-..+ +.|...++..... .......-...+.+++++ + .+.++-...
T Consensus 194 -----~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGlavd~~~~~lY~aD~~~ 267 (386)
T 3v65_B 194 -----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKH 267 (386)
T ss_dssp -----EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEEGGGTEEEEEETTT
T ss_pred -----EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCeeeEEEeCCCCEEEEEECCC
Confidence 222223335678999999555556655555 7888888875432 223333344578999984 3 445555667
Q ss_pred CcEEEEEecC
Q psy2113 164 NSVRVFKTKH 173 (183)
Q Consensus 164 g~i~iwd~~~ 173 (183)
+.|..+|+..
T Consensus 268 ~~I~~~d~dG 277 (386)
T 3v65_B 268 HVIERANLDG 277 (386)
T ss_dssp TEEEEECTTS
T ss_pred CEEEEEeCCC
Confidence 7898888764
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.027 Score=40.32 Aligned_cols=155 Identities=7% Similarity=-0.027 Sum_probs=88.8
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEcc-CCe-EEEEeCCCeEEEEEcCCCCCcc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-VDE-IITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~-l~s~~~d~~v~vwd~~~~~~~~ 87 (183)
..+++|++....+...++....+.... .........+.........+++.+ ++. +++-...+.|.+.++.....
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~--~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 150 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRAN--LNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-- 150 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEE--TTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred eEEEEEeccccEEEEEeccCCceEEEe--cCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce--
Confidence 367788876666665553322221111 111111112222233456788875 455 45666678999999875432
Q ss_pred CceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-CeEEEEeCCCCCcceEEeccCCCcEEEEEecC-Cc-EEEEecCCC
Q psy2113 88 GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YR-YIMSGGQDN 164 (183)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg 164 (183)
...+...-.....++++|.++.++.+-..+ +.|...++..... .......-...+.+++++ +. +.++-...+
T Consensus 151 ----~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~ 225 (349)
T 3v64_C 151 ----KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR-RIIADTHLFWPNGLTIDYAGRRMYWVDAKHH 225 (349)
T ss_dssp ----EEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EESCCSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ----EEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc-EEEEECCCCCcceEEEeCCCCEEEEEECCCC
Confidence 222223335678999999556566665555 7899888875432 222222334578999984 44 445556677
Q ss_pred cEEEEEecC
Q psy2113 165 SVRVFKTKH 173 (183)
Q Consensus 165 ~i~iwd~~~ 173 (183)
.|..+|+..
T Consensus 226 ~I~~~~~dG 234 (349)
T 3v64_C 226 VIERANLDG 234 (349)
T ss_dssp EEEEEETTS
T ss_pred EEEEEeCCC
Confidence 899998764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.03 Score=43.81 Aligned_cols=55 Identities=9% Similarity=0.125 Sum_probs=37.8
Q ss_pred CCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 121 DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 121 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+|.|..||+.+++. +-.... ..+.....+. .+.+++.++.||.|+.||.++++..
T Consensus 437 ~g~l~A~D~~tG~~-~W~~~~-~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l 492 (668)
T 1kv9_A 437 SGALLAWDPVKQKA-AWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (668)
T ss_dssp EEEEEEEETTTTEE-EEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEEeCCCCcE-EEEccC-CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhh
Confidence 47899999999875 333332 2222222233 5578888999999999999887654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.04 Score=40.60 Aligned_cols=115 Identities=12% Similarity=0.178 Sum_probs=76.8
Q ss_pred CeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccC------ceeEEEeec------CCcceEEEEEecCC--CCEEEEEe
Q psy2113 54 AISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKG------AIVKSTFSS------HKEWVQSVRWSPID--PQLFVSAS 119 (183)
Q Consensus 54 ~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~------~~~~~~~~~------~~~~v~~~~~~p~~--~~~l~~~~ 119 (183)
.|..+..+|+|.+++-..+..|.|-.+..+..... ......+.- ...+|..+.|+|.. +..|++-.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt 146 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK 146 (452)
T ss_dssp TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence 67889999999988888899999999873321111 111222222 24679999999953 34788888
Q ss_pred CCCeEEEEeCCCCC-cceEEec---------cCCCcEEEEEecCC-cEEEE--ecCCCcEEEE
Q psy2113 120 FDNSVKLWDLRSPK-VPLFDML---------GHEDKVMCVNWSDY-RYIMS--GGQDNSVRVF 169 (183)
Q Consensus 120 ~dg~i~vwd~~~~~-~~~~~~~---------~~~~~v~~~~~~~~-~~l~~--~~~dg~i~iw 169 (183)
.|+.|++||+.... .|. .+. .....|.+++|..+ -.|.. .+..|.|+-.
T Consensus 147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999998632 222 222 22257889999865 34444 5577877654
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.013 Score=43.03 Aligned_cols=115 Identities=18% Similarity=0.188 Sum_probs=69.5
Q ss_pred EEEEEeecCcEEEEEE---eccCCCCccccccc-----CccceEEEec------cCCCeeEEEEccC----CeEEEEeCC
Q psy2113 11 LGVIFMTVGALLTLTN---IEVTSLPSFFQLIL-----QKTPLITLKG------HKEAISAVQWTAV----DEIITSSWD 72 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~------h~~~v~~~~~~~~----~~l~s~~~d 72 (183)
.-+..+|+|.++++.+ +.+..+|....... ..-....+.- ...+|..+.|+|- ..|++-..|
T Consensus 69 ~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD 148 (452)
T 3pbp_A 69 FHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED 148 (452)
T ss_dssp CEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT
T ss_pred eEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC
Confidence 3478999999999876 55555552211111 1111223322 2467999999975 359999999
Q ss_pred CeEEEEEcCCCCCccCceeEE-----EeecCCcceEEEEEecCCCCEEEE--EeCCCeEEEE
Q psy2113 73 HTLKIWDAELGGMKKGAIVKS-----TFSSHKEWVQSVRWSPIDPQLFVS--ASFDNSVKLW 127 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~--~~~dg~i~vw 127 (183)
+.|++||+......+. .... ........|.+++|.+ ++-.|.. .+..|.|+-.
T Consensus 149 ~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 149 DTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSK-DGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECT-TSSCEEEEECTTSCEEEEE
T ss_pred CEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcC-CCcEEEEEecCCCCCEEEE
Confidence 9999999986332221 0000 1112235688999998 6654444 4477887644
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.05 Score=43.26 Aligned_cols=115 Identities=9% Similarity=0.145 Sum_probs=76.9
Q ss_pred CCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEe----ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 53 EAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTF----SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 53 ~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
..|.++...++|.|..|+.++-+..++........ .... ......|.++...+ ++++. .|+.++-|..||
T Consensus 310 ~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~----~~~~~~~~~l~~~~V~~i~~d~-~g~lW-iGt~~~Gl~~~~ 383 (795)
T 4a2l_A 310 RSVRSIFMDSQGGMWLGTYFGGLNYYHPIRNRFKN----IRNIPYKNSLSDNVVSCIVEDK-DKNLW-IGTNDGGLNLYN 383 (795)
T ss_dssp SCEEEEEECTTSCEEEEESSSCEEEECGGGGSSEE----ECCCTTSSSCSCSSEEEEEECT-TSCEE-EEESSSCEEEEC
T ss_pred CcEEEEEEeCCcCEEEEECCCCeEEeCCCcccceE----EcCCCCCCCCCCCeeEEEEECC-CCCEE-EEECCCCeEEEc
Confidence 56889988888999999988889999876543210 0000 01245689998877 66544 466677788999
Q ss_pred CCCCCcceEEec---------cCCCcEEEEEecCCcE-EEEecCCCcEEEEEecCCC
Q psy2113 129 LRSPKVPLFDML---------GHEDKVMCVNWSDYRY-IMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 129 ~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~ 175 (183)
..++.. ..+. -....|.++...++.. |..|+.++-|..||.++++
T Consensus 384 ~~~~~~--~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 384 PITQRF--TSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp TTTCCE--EEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred CCCCcE--EEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 887653 2221 1235788888875544 7778877779999877643
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.019 Score=42.65 Aligned_cols=104 Identities=13% Similarity=0.155 Sum_probs=68.2
Q ss_pred EEEEeCCCeEEEEEcCCCCCccCceeEEEee------c-CCcceEEEEEecCCCCEEEEEeCC------CeEEEEeCCCC
Q psy2113 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFS------S-HKEWVQSVRWSPIDPQLFVSASFD------NSVKLWDLRSP 132 (183)
Q Consensus 66 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~------~-~~~~v~~~~~~p~~~~~l~~~~~d------g~i~vwd~~~~ 132 (183)
++++-.++.|+++|+.+.... ..+...+. . .....+.+...| ++ +++++..+ |.|.+.|.++.
T Consensus 99 ~v~~l~s~~I~viD~~t~p~~--p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 99 IVPGLRSSRIYIIDTKPNPRE--PKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp EEEBTTTCCEEEEECCSCTTS--CEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred EEccCCCCeEEEEECCCCCCC--ceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 567778899999998754221 12233331 0 112456777889 67 77776665 78999999988
Q ss_pred CcceEEeccCCC---cEEEEEecCC-cEEEEec-------------------CCCcEEEEEecCC
Q psy2113 133 KVPLFDMLGHED---KVMCVNWSDY-RYIMSGG-------------------QDNSVRVFKTKHQ 174 (183)
Q Consensus 133 ~~~~~~~~~~~~---~v~~~~~~~~-~~l~~~~-------------------~dg~i~iwd~~~~ 174 (183)
+. +........ -...+.|+|+ +.+++.. .+.+|.+||+.++
T Consensus 175 ~v-~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 175 EP-LGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp CE-EEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred eE-EEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 75 555542211 2356778866 6777763 3688999999865
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.11 Score=41.40 Aligned_cols=118 Identities=8% Similarity=0.075 Sum_probs=75.7
Q ss_pred CCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEE-e-ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCC
Q psy2113 53 EAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKST-F-SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130 (183)
Q Consensus 53 ~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~ 130 (183)
..|.++...+++.|..|+.++-+..||..+............ - ......|.++...+ +++.+..|+.++-+..+|..
T Consensus 357 ~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~lWigt~~~Gl~~~d~~ 435 (795)
T 4a2l_A 357 NVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSLVYIGTHAGGLSILHRN 435 (795)
T ss_dssp SSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTEEEEEETTTEEEEEETT
T ss_pred CeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCEEEEEeCcCceeEEeCC
Confidence 458888888888888899888899999876542110000000 0 01235688998887 67645566777789999998
Q ss_pred CCCcceEEec-----cCCCcEEEEEecCCcEEEEecCCCcEEEEEecCC
Q psy2113 131 SPKVPLFDML-----GHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 131 ~~~~~~~~~~-----~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 174 (183)
+++. ..+. .....|.++...++..|..|+. +-|..||..++
T Consensus 436 ~~~~--~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 436 SGQV--ENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR 481 (795)
T ss_dssp TCCE--EEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT
T ss_pred CCcE--EEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC
Confidence 7763 2322 1345788888876555555555 45788887653
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.039 Score=43.29 Aligned_cols=72 Identities=10% Similarity=0.145 Sum_probs=48.9
Q ss_pred EEEEecCCCCEEEEEeCCCe-------------------EEEEeCCCCCcceEEecc--CC-------CcEEEEEec-CC
Q psy2113 104 SVRWSPIDPQLFVSASFDNS-------------------VKLWDLRSPKVPLFDMLG--HE-------DKVMCVNWS-DY 154 (183)
Q Consensus 104 ~~~~~p~~~~~l~~~~~dg~-------------------i~vwd~~~~~~~~~~~~~--~~-------~~v~~~~~~-~~ 154 (183)
.++++| +..+++.+..++. |..+|.++++. +-.++. |. .++...... .+
T Consensus 239 ~~~~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~-~W~~~~~~~d~wd~~~~~~~~l~d~~~~G 316 (689)
T 1yiq_A 239 SFAYDP-ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY-VWHYQTTPGDAWDYTATQHMILAELPIDG 316 (689)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE-EEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ceeEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce-eEeeecCCcccccccCCCCcEEEeeccCC
Confidence 577888 6678888877764 99999999986 443332 21 112111211 23
Q ss_pred ---cEEEEecCCCcEEEEEecCCCCC
Q psy2113 155 ---RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 155 ---~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
..++.++.+|.++++|.++++..
T Consensus 317 ~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 317 KPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred cEEEEEEEECCCCeEEEEECCCCCEe
Confidence 37889999999999999988754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.019 Score=43.98 Aligned_cols=55 Identities=9% Similarity=0.060 Sum_probs=36.8
Q ss_pred CCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 121 DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 121 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+|.+..||..+++. +-.... ...+...... .+..++.++.||.|+.||.++++..
T Consensus 443 ~g~l~a~D~~tG~~-~W~~~~-~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~l 498 (571)
T 2ad6_A 443 MGQIRAFDLTTGKA-KWTKWE-KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL 498 (571)
T ss_dssp CEEEEEECTTTCCE-EEEEEE-SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred CCeEEEEECCCCCE-EEEecC-CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEE
Confidence 57899999998875 333322 2222222222 4567788999999999999988754
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.017 Score=45.74 Aligned_cols=112 Identities=10% Similarity=0.040 Sum_probs=67.1
Q ss_pred CeeEEEEc-cCCe-EE-EEeCC----CeEEEEEcCCC-CCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC----
Q psy2113 54 AISAVQWT-AVDE-II-TSSWD----HTLKIWDAELG-GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD---- 121 (183)
Q Consensus 54 ~v~~~~~~-~~~~-l~-s~~~d----~~v~vwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---- 121 (183)
.+....|+ |+|. ++ +...+ ..|+++|+.++ +.... .+. .....++|+| +++.|+....|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-----~~~---~~~~~~~Wsp-Dg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-----KVS---GTNGEIVWGP-DHTSLFYVTKDETLR 245 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-----CEE---EECSCCEECS-STTEEEEEEECTTCC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-----ccc---CceeeEEEec-CCCEEEEEEECCCCC
Confidence 57789999 9987 33 22222 35999999887 52111 111 1134678999 66655555544
Q ss_pred -CeEEEEeCCCCCcc-eEEec-cCCCcEEEEEecCC-cEEEEec---CCCcEEEEEecCC
Q psy2113 122 -NSVKLWDLRSPKVP-LFDML-GHEDKVMCVNWSDY-RYIMSGG---QDNSVRVFKTKHQ 174 (183)
Q Consensus 122 -g~i~vwd~~~~~~~-~~~~~-~~~~~v~~~~~~~~-~~l~~~~---~dg~i~iwd~~~~ 174 (183)
..|+++++.++... ...+. ........+.|+++ ++|+..+ ....|.++|+.++
T Consensus 246 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred CCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 36888888775421 22222 22345677889966 6665443 2345888888765
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.072 Score=38.66 Aligned_cols=117 Identities=8% Similarity=0.018 Sum_probs=74.0
Q ss_pred CCCeeEEEEccC-CeE-EEEeCC-CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 52 KEAISAVQWTAV-DEI-ITSSWD-HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 52 ~~~v~~~~~~~~-~~l-~s~~~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
......+++.|. +.| ++-... +.|...++..... .......-.....++++|.++.++++-...+.|..+|
T Consensus 201 l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d 274 (386)
T 3v65_B 201 LEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERAN 274 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEEC
T ss_pred CCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCc------EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEe
Confidence 355688999864 554 444444 7888888765432 1122223345789999985565666666678999999
Q ss_pred CCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCC
Q psy2113 129 LRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 129 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+..... .............+++..+..+++-...+.|..+|..+++
T Consensus 275 ~dG~~~-~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 275 LDGSHR-KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp TTSCSC-EEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred CCCCee-EEEEECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCCc
Confidence 875432 2233333445677777665677777778888888854443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.066 Score=37.32 Aligned_cols=122 Identities=6% Similarity=-0.028 Sum_probs=71.7
Q ss_pred ccceEEEeccCCCeeEEEEccCCeEEEE-eCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC
Q psy2113 42 KTPLITLKGHKEAISAVQWTAVDEIITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 42 ~~~~~~~~~h~~~v~~~~~~~~~~l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
.+.+..+... .....++|.+++.|+.+ ..++.|..||..... .... .....+..+++.+ +++++++...
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-------~~~~-~~~~~p~gia~~~-dG~l~vad~~ 91 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-------QIHA-TVEGKVSGLAFTS-NGDLVATGWN 91 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-------EEEE-ECSSEEEEEEECT-TSCEEEEEEC
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-------EEEE-eCCCCceeEEEcC-CCcEEEEecc
Confidence 3444455432 46789999988775544 478899999876422 1122 2345688999999 7776666543
Q ss_pred C--CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecC
Q psy2113 121 D--NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 121 d--g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~ 173 (183)
. ..|..+|..+++...............++..++ ..+++-..++.|..+|...
T Consensus 92 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 92 ADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp TTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred CCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 2 257777877765311111112223344554444 4445555688888888754
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.80 E-value=0.087 Score=38.45 Aligned_cols=158 Identities=8% Similarity=-0.056 Sum_probs=88.4
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccC--ccceEEEeccCCCeeEEEEcc-CCe-EEEEeCCCeEEEEEcCCCCC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQ--KTPLITLKGHKEAISAVQWTA-VDE-IITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~-~~~-l~s~~~d~~v~vwd~~~~~~ 85 (183)
..+++|++....+...+.....+.....+... ......+.........+++.+ .+. +++-...+.|.+.++.....
T Consensus 114 ~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~ 193 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 193 (400)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSE
T ss_pred ceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCce
Confidence 45778887666666655332211111111100 111222222344567888875 455 45556678899988875442
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcEE-EEecC
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYI-MSGGQ 162 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~~~~~ 162 (183)
...+...-.....|++.|..+.++.+-.. .+.|...++..... .......-...+.|++++ +..| ++-..
T Consensus 194 ------~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~-~~~~~~~l~~P~glavd~~~~~lY~aD~~ 266 (400)
T 3p5b_L 194 ------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSK 266 (400)
T ss_dssp ------EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred ------EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc-EEEEECCCCceEEEEEEeCCCEEEEEECC
Confidence 22233334457899999955555555433 36888888865442 233333335678999984 4444 44455
Q ss_pred CCcEEEEEecCC
Q psy2113 163 DNSVRVFKTKHQ 174 (183)
Q Consensus 163 dg~i~iwd~~~~ 174 (183)
.+.|..+|+...
T Consensus 267 ~~~I~~~d~dG~ 278 (400)
T 3p5b_L 267 LHSISSIDVNGG 278 (400)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEeCCCC
Confidence 678888887643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.15 Score=40.85 Aligned_cols=158 Identities=8% Similarity=-0.050 Sum_probs=86.7
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCccccccc--CccceEEEeccCCCeeEEEEccC-Ce-EEEEeCCCeEEEEEcCCCCC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLIL--QKTPLITLKGHKEAISAVQWTAV-DE-IITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~~~-~~-l~s~~~d~~v~vwd~~~~~~ 85 (183)
..+++|.+....+...+.....+.....+.. .......+.........|++.+. +. +++-...+.|.+.++.....
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~ 505 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 505 (791)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred eEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE
Confidence 3567777765555555432111111110100 01122223323445678888744 34 55666788999999875432
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-CeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcEE-EEecC
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYI-MSGGQ 162 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~~~~~ 162 (183)
...+...-.....|++.|..+.++.+-..+ +.|.+.++..... .......-...+.|++.+ +..| ++-..
T Consensus 506 ------~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~-~~lv~~~l~~P~GLavD~~~~~LYwaD~~ 578 (791)
T 3m0c_C 506 ------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSK 578 (791)
T ss_dssp ------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred ------EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-EEEEeCCCCCceEEEEecCCCeEEEEeCC
Confidence 222223344588999999445555554333 7888888865442 233333335678888883 3444 44455
Q ss_pred CCcEEEEEecCC
Q psy2113 163 DNSVRVFKTKHQ 174 (183)
Q Consensus 163 dg~i~iwd~~~~ 174 (183)
.+.|...++...
T Consensus 579 ~~~I~~~d~dG~ 590 (791)
T 3m0c_C 579 LHSISSIDVNGG 590 (791)
T ss_dssp TTEEEEEETTSC
T ss_pred CCcEEEEecCCC
Confidence 667888887543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.021 Score=43.88 Aligned_cols=56 Identities=18% Similarity=0.174 Sum_probs=37.1
Q ss_pred CCeEEEEeCCCCCcceEEeccCCCcEEEEEe-cCCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 121 DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNW-SDYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 121 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+|.|.-||+.+++. +-..... .++..-.. ..+.+++.++.||.++.||.++++..-
T Consensus 465 ~G~l~A~D~~tG~~-~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW 521 (582)
T 1flg_A 465 VGSLRAMDPVSGKV-VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELW 521 (582)
T ss_dssp SEEEEEECTTTCCE-EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cceEEEEECCCCCE-EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEE
Confidence 57899999999875 3333222 12211111 245778889999999999999887543
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.067 Score=41.65 Aligned_cols=112 Identities=17% Similarity=0.197 Sum_probs=66.0
Q ss_pred EEEEcc-CCe-EEEEeCCC-----------eEEEEEcCCCCCccCceeEEEee-cCCcceEEEEEecCCCCEEEEEeC-C
Q psy2113 57 AVQWTA-VDE-IITSSWDH-----------TLKIWDAELGGMKKGAIVKSTFS-SHKEWVQSVRWSPIDPQLFVSASF-D 121 (183)
Q Consensus 57 ~~~~~~-~~~-l~s~~~d~-----------~v~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~-d 121 (183)
..++.+ +++ ++.|+.+. .+.+||..+++... ...+. .+.....++++.+ ++.+++.|+. +
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~----~~~~~~~~~~~~~~~~~~~-~g~lyv~GG~~~ 264 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSD----RTVTVTKHDMFCPGISMDG-NGQIVVTGGNDA 264 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCC----CEEEECSCCCSSCEEEECT-TSCEEEECSSST
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEe----CcccCCCCCCccccccCCC-CCCEEEeCCCCC
Confidence 556665 677 55665432 58899998776532 12221 2333344566777 7888888884 4
Q ss_pred CeEEEEeCCCCCcc-eEEeccCCCcEEEEEec-CCcEEEEec-CC-----CcEEEEEecCC
Q psy2113 122 NSVKLWDLRSPKVP-LFDMLGHEDKVMCVNWS-DYRYIMSGG-QD-----NSVRVFKTKHQ 174 (183)
Q Consensus 122 g~i~vwd~~~~~~~-~~~~~~~~~~v~~~~~~-~~~~l~~~~-~d-----g~i~iwd~~~~ 174 (183)
..+.+||..+.+-. +..+...... .++... ++..++.|+ .+ ..+.+||+.+.
T Consensus 265 ~~v~~yd~~t~~W~~~~~~~~~R~~-~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 265 KKTSLYDSSSDSWIPGPDMQVARGY-QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp TCEEEEEGGGTEEEECCCCSSCCSS-CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred CceEEecCcCCceeECCCCCccccc-cceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 58999999876420 1111111122 233444 667777777 44 46899998764
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.023 Score=44.56 Aligned_cols=92 Identities=12% Similarity=0.118 Sum_probs=59.1
Q ss_pred CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec-cCCCcEEEEEe
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML-GHEDKVMCVNW 151 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~v~~~~~ 151 (183)
+.|..||+.+++. ..... +..++....+.. .+.+++.++.||.+++||.++++. +..+. ++.....-+.|
T Consensus 457 g~l~A~D~~tG~~------~W~~~-~~~~~~~g~~~~-~g~~v~~g~~dg~l~a~D~~tG~~-lw~~~~~~~~~~~p~~y 527 (677)
T 1kb0_A 457 GRLLAWDPVAQKA------AWSVE-HVSPWNGGTLTT-AGNVVFQGTADGRLVAYHAATGEK-LWEAPTGTGVVAAPSTY 527 (677)
T ss_dssp EEEEEEETTTTEE------EEEEE-ESSSCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEE
T ss_pred cEEEEEeCCCCcE------EeecC-CCCCCcCcceEe-CCCEEEEECCCCcEEEEECCCCce-eeeeeCCCCcccCCEEE
Confidence 7899999988764 33433 333344444555 566888889999999999999987 55544 33333344556
Q ss_pred c-CC-cEEEEecC----------------CCcEEEEEecC
Q psy2113 152 S-DY-RYIMSGGQ----------------DNSVRVFKTKH 173 (183)
Q Consensus 152 ~-~~-~~l~~~~~----------------dg~i~iwd~~~ 173 (183)
. ++ .+++..+. .+.+..|.+..
T Consensus 528 ~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 528 MVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp EETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred EeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 4 55 44444222 36788888773
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0087 Score=40.02 Aligned_cols=110 Identities=5% Similarity=-0.021 Sum_probs=64.9
Q ss_pred CCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEee--cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 52 KEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFS--SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 52 ~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
-..+..++|+|++.|.+. .++.++-.+..+.....=......+- +... ..++-|.| ++.+.++ .||.|+-++.
T Consensus 40 w~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~-~G~LYav--~dG~iyr~~p 114 (236)
T 1tl2_A 40 WSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDP-NGYLYAV--SKDKLYKASP 114 (236)
T ss_dssp CTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECT-TSCEEEE--ETTEEEEESC
T ss_pred cccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECC-CCCEEEe--CCCEEEEeCC
Confidence 347889999999998777 77876665543322110000001110 1111 47888999 7877766 5799988877
Q ss_pred CCCCcc-----eEEe-ccCCCcEEEEEecCCcEEEEecCCCcEE
Q psy2113 130 RSPKVP-----LFDM-LGHEDKVMCVNWSDYRYIMSGGQDNSVR 167 (183)
Q Consensus 130 ~~~~~~-----~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~i~ 167 (183)
.+...- ...+ ..-=..+..|.+.|+..|.+.. |+.+.
T Consensus 115 P~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~ly 157 (236)
T 1tl2_A 115 PQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQFY 157 (236)
T ss_dssp CCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTEEE
T ss_pred CcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCcEE
Confidence 543220 0111 1111467888999887777777 88854
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.19 Score=38.66 Aligned_cols=73 Identities=11% Similarity=0.060 Sum_probs=50.3
Q ss_pred cceEEEEEecCCCCE-EEEEeCCCeEEEEeCCCCCc----------ceEEeccCCCcEEEEEecCCcEE-EEecCCCcEE
Q psy2113 100 EWVQSVRWSPIDPQL-FVSASFDNSVKLWDLRSPKV----------PLFDMLGHEDKVMCVNWSDYRYI-MSGGQDNSVR 167 (183)
Q Consensus 100 ~~v~~~~~~p~~~~~-l~~~~~dg~i~vwd~~~~~~----------~~~~~~~~~~~v~~~~~~~~~~l-~~~~~dg~i~ 167 (183)
....++.++| ++.+ ++++..+..|.++|+.+.+. .+.....-......++|+++..+ ++.-.|++|.
T Consensus 277 ~~PhGv~~sP-DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 277 NNPHGCNMAP-DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVV 355 (595)
T ss_dssp SSCCCEEECT-TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred CCceEEEEcC-CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEE
Confidence 3567899999 6664 55555788999999985421 12222233356789999965444 4566799999
Q ss_pred EEEecC
Q psy2113 168 VFKTKH 173 (183)
Q Consensus 168 iwd~~~ 173 (183)
+||+.+
T Consensus 356 kwdi~~ 361 (595)
T 1fwx_A 356 KWNIED 361 (595)
T ss_dssp EEEHHH
T ss_pred EEEhhH
Confidence 999876
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.12 Score=36.32 Aligned_cols=157 Identities=8% Similarity=-0.055 Sum_probs=87.6
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCccccccc-C-ccceEEEeccCCCeeEEEEcc-CCeE-EEEeCCCeEEEEEcCCCCC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLIL-Q-KTPLITLKGHKEAISAVQWTA-VDEI-ITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~h~~~v~~~~~~~-~~~l-~s~~~d~~v~vwd~~~~~~ 85 (183)
..+++|++.+..+...+.....+..+..... . ......+........++++.+ ++.| ++-...+.|.+.++.....
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~ 111 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR 111 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCce
Confidence 3578888877666665533222111111110 0 111112222234557888874 4554 5556788999999865332
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-CeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcE-EEEecC
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRY-IMSGGQ 162 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-l~~~~~ 162 (183)
.............++++|.++.++.+.... +.|...++..... .......-...+.+++++ +.. .++-..
T Consensus 112 ------~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~~~~~~~~~~P~gla~d~~~~~lY~~D~~ 184 (316)
T 1ijq_A 112 ------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSK 184 (316)
T ss_dssp ------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred ------EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-EEEEECCCCCceEEEEeccCCEEEEEECC
Confidence 112222335678999998555555554443 7888888864332 222222335678999984 444 455556
Q ss_pred CCcEEEEEecC
Q psy2113 163 DNSVRVFKTKH 173 (183)
Q Consensus 163 dg~i~iwd~~~ 173 (183)
.+.|..+|+..
T Consensus 185 ~~~I~~~d~dg 195 (316)
T 1ijq_A 185 LHSISSIDVNG 195 (316)
T ss_dssp TTEEEEEETTS
T ss_pred CCeEEEEecCC
Confidence 77899999864
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.13 Score=36.68 Aligned_cols=117 Identities=8% Similarity=0.009 Sum_probs=73.2
Q ss_pred cCCCeeEEEEcc-CCeE-EEEeCC-CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEE
Q psy2113 51 HKEAISAVQWTA-VDEI-ITSSWD-HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 127 (183)
Q Consensus 51 h~~~v~~~~~~~-~~~l-~s~~~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vw 127 (183)
.......+++.| ++.| ++-... +.|...++..... .......-.....++++|.++.+.++-...+.|..+
T Consensus 157 ~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~ 230 (349)
T 3v64_C 157 SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGR------RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA 230 (349)
T ss_dssp TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC------EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCc------EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence 334568899987 4554 444444 7888888765432 111122234578999998555566666667899999
Q ss_pred eCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCC
Q psy2113 128 DLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 128 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 174 (183)
|+..... .............+++..+..+++-...+.|..+|..++
T Consensus 231 ~~dG~~~-~~~~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 231 NLDGSHR-KAVISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp ETTSCSC-EEEECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred eCCCCce-EEEEeCCCCCceEEEEECCEEEEecCCCCeEEEEEccCC
Confidence 9875432 223333344567777765566677777788888875444
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.17 Score=37.38 Aligned_cols=152 Identities=6% Similarity=0.085 Sum_probs=81.4
Q ss_pred eEEEEEeec--CcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCC----e-EEEEEcCC
Q psy2113 10 TLGVIFMTV--GALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDH----T-LKIWDAEL 82 (183)
Q Consensus 10 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~----~-v~vwd~~~ 82 (183)
..+++++|+ ...+.+.+.. ..+..+ +. ....+..+.........+++.+++.|+.+...+ . +...+..
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~~I~~i--d~-~~g~v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~- 215 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-DAFRHV--DF-VNQYVDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRA- 215 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-SCEEEE--ET-TTTEEEEECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGG-
T ss_pred CceEEEccccCCCEEEEEeCC-CCEEEE--EC-CCCEEEEeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECC-
Confidence 357888884 3334444332 111111 11 122334444445567899999887765554321 2 2223322
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe--ccCCCcEEEEEecCC-c-EEE
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM--LGHEDKVMCVNWSDY-R-YIM 158 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~-~-~l~ 158 (183)
..... ...+. .......++++|.++.++++-..++.|+.+|..++.. ...+ .+.......++|+++ + +.+
T Consensus 216 ~~~~~----~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~-~~~~~~~~~~~~~~~ia~dpdG~~LYv 289 (433)
T 4hw6_A 216 SGFTE----RLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTL-TEEEVMMDTKGSNFHIVWHPTGDWAYI 289 (433)
T ss_dssp GTTCC----EEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCE-EEEEEECSCCSSCEEEEECTTSSEEEE
T ss_pred CCeec----ccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeE-EEEEeccCCCCCcccEEEeCCCCEEEE
Confidence 11110 01111 2234567888885566666666778999999986653 1122 112223356999965 5 555
Q ss_pred EecCCCcEEEEEec
Q psy2113 159 SGGQDNSVRVFKTK 172 (183)
Q Consensus 159 ~~~~dg~i~iwd~~ 172 (183)
+-...+.|+.+++.
T Consensus 290 ad~~~~~I~~~~~d 303 (433)
T 4hw6_A 290 IYNGKHCIYRVDYN 303 (433)
T ss_dssp EETTTTEEEEEEBC
T ss_pred EeCCCCEEEEEeCC
Confidence 66667889998865
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.23 Score=39.46 Aligned_cols=112 Identities=12% Similarity=0.132 Sum_probs=72.0
Q ss_pred CCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEee---cCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 52 KEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFS---SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 52 ~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
...|.++...+++.|..|+.++-+..+|..++.. ..+. .....|.++...+ ++.+.+ |+. +-+..+|
T Consensus 406 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~-------~~~~~~~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~ 475 (781)
T 3v9f_A 406 SNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKF-------QIIELEKNELLDVRVFYEDK-NKKIWI-GTH-AGVFVID 475 (781)
T ss_dssp CSBEEEEEECTTSCEEEEETTEEEEEECSSSCEE-------EECCSTTTCCCCEEEEEECT-TSEEEE-EET-TEEEEEE
T ss_pred CcceEEEEECCCCCEEEEeccCCEEEEcCCCCcE-------EEeccCCCCCCeEEEEEECC-CCCEEE-EEC-CceEEEe
Confidence 3568888877778888888877888888765442 1221 1345788888877 565544 444 5688899
Q ss_pred CCCCCcceEEeccC-----CCcEEEEEecCCcEEEEecCCCcEEEEEecCC
Q psy2113 129 LRSPKVPLFDMLGH-----EDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 129 ~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 174 (183)
..+.+. ....... ...|.++...++..|..|+.++-|..||.++.
T Consensus 476 ~~~~~~-~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 476 LASKKV-IHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQ 525 (781)
T ss_dssp SSSSSC-CEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCC
T ss_pred CCCCeE-EecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCC
Confidence 887654 2222111 35788888876656666666445777776543
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.17 Score=36.02 Aligned_cols=113 Identities=6% Similarity=0.058 Sum_probs=73.4
Q ss_pred eeEEEE---ccCCeEEEEeC--------------CCeEEEEEcC---CCCCccCceeEEEeec-----------CCcceE
Q psy2113 55 ISAVQW---TAVDEIITSSW--------------DHTLKIWDAE---LGGMKKGAIVKSTFSS-----------HKEWVQ 103 (183)
Q Consensus 55 v~~~~~---~~~~~l~s~~~--------------d~~v~vwd~~---~~~~~~~~~~~~~~~~-----------~~~~v~ 103 (183)
+.+|.| .+.++|+.... +..+..+|+. +++... ...+.. ......
T Consensus 65 ~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~----~~dL~~~~~~~~~~~g~~~~~~n 140 (334)
T 2p9w_A 65 MSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVW----SVNFEKVQDEFEKKAGKRPFGVV 140 (334)
T ss_dssp EEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSE----EEESHHHHHHHHHHHSSCCEEEE
T ss_pred eeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEE----EecCccccccccccccccccCCc
Confidence 578999 57787554332 6789999998 554321 111211 112478
Q ss_pred EEEEecCCCCEEEEEeCC-CeEEEEeCCCCCcceEEec-c-----CCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 104 SVRWSPIDPQLFVSASFD-NSVKLWDLRSPKVPLFDML-G-----HEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 104 ~~~~~p~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~-~-----~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
.++..+ +++..++++.- +.|...+..... ...+. . .....+.|+++|+ ..|++...+|.|..+|++..
T Consensus 141 DvavD~-~GnaYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 141 QSAQDR-DGNSYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp EEEECT-TSCEEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSS
T ss_pred eeEECC-CCCEEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCC
Confidence 999999 88999988888 887777776442 22211 1 1123568999965 56666655999999998843
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.024 Score=44.57 Aligned_cols=112 Identities=10% Similarity=-0.005 Sum_probs=65.7
Q ss_pred eeEEEEc-cCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-CeEEEEeCCC
Q psy2113 55 ISAVQWT-AVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-NSVKLWDLRS 131 (183)
Q Consensus 55 v~~~~~~-~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~vwd~~~ 131 (183)
...|++. ..+. +++-...+.|.+.++..... ...+.........+++.|..+.++++-... +.|.+.++..
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG 528 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 528 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCce------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC
Confidence 4567776 3444 45555678899998765432 111222224467888998555555554333 6788877754
Q ss_pred CCcceEEeccCCCcEEEEEecCC--cEEEEecCCCcEEEEEecC
Q psy2113 132 PKVPLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 132 ~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~ 173 (183)
... .......-...+.|+|++. .++++-...+.|..+|+..
T Consensus 529 ~~~-~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 529 VDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCC-CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred CCe-eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 332 2222222345678899853 4555666677899998864
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.15 Score=39.34 Aligned_cols=56 Identities=7% Similarity=-0.015 Sum_probs=36.1
Q ss_pred CCeEEEEeCCCCCcceEEeccCCCcEEEE-EecCCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 121 DNSVKLWDLRSPKVPLFDMLGHEDKVMCV-NWSDYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 121 dg~i~vwd~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+|.+.-||+.+++. +-... +..+...- ....+..++.++.||.|+.||.++++..-
T Consensus 452 ~G~l~A~D~~tG~~-~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 452 LGQIKAYNAITGDY-KWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp CEEEEEECTTTCCE-EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCeEEEEECCCCCE-EeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 47888999998874 33322 11122111 11245677789999999999999887543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.43 Score=37.89 Aligned_cols=115 Identities=8% Similarity=0.004 Sum_probs=70.4
Q ss_pred CCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEee---cCCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 52 KEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFS---SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 52 ~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
...|.++...+++.|..|+. +-+..+|..+..... ..... .....|.++...+ ++.+.+....+| +..+|
T Consensus 449 ~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~----~~~~~~~~~~~~~i~~i~~d~-~g~lWigt~~~G-l~~~~ 521 (781)
T 3v9f_A 449 LLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIH----HYDTSNSQLLENFVRSIAQDS-EGRFWIGTFGGG-VGIYT 521 (781)
T ss_dssp CCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCE----EECTTTSSCSCSCEEEEEECT-TCCEEEEESSSC-EEEEC
T ss_pred CCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEe----cccCcccccccceeEEEEEcC-CCCEEEEEcCCC-EEEEe
Confidence 35688888777888777777 568889887654311 10000 1135688998887 676655443344 67788
Q ss_pred CCCCCcceEEecc----CCCcEEEEEecCCcEEEEecCCCcEEEEEecCCC
Q psy2113 129 LRSPKVPLFDMLG----HEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 129 ~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
..+.+. ..+.. ....|.++...++..|..++.+|.|..||.++.+
T Consensus 522 ~~~~~~--~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~ 570 (781)
T 3v9f_A 522 PDMQLV--RKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFD 570 (781)
T ss_dssp TTCCEE--EEECTTTTCSCSCEEEEEECTTSCEEEEETTEEEEESCTTTCC
T ss_pred CCCCeE--EEccCCCCCCCCeeEEEEECCCCCEEEEECCCceEEECCCCCc
Confidence 876542 22221 2346888888765555555556665778876543
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.26 Score=35.25 Aligned_cols=103 Identities=9% Similarity=0.086 Sum_probs=59.4
Q ss_pred CCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEe---ecCCcceEEEEEecC---CCCEEEEEeCC----
Q psy2113 52 KEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTF---SSHKEWVQSVRWSPI---DPQLFVSASFD---- 121 (183)
Q Consensus 52 ~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~---~~~~l~~~~~d---- 121 (183)
-..-..++|.|++.++.+..++.|++++ .+... ....+ .........++++|+ ++.+.++-..+
T Consensus 30 l~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~----~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIAERPGRIRLFR--EGRLS----TYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp CSCEEEEEECTTSCEEEEETTTEEEEEE--TTEEE----EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CCCceEEEEcCCCeEEEEeCCCeEEEEE--CCCcc----EeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 3455799999999988888889999998 22211 11111 112356889999993 24455554432
Q ss_pred -CeEEEEeCCCCC-----cceEEec---cCCCcEEEEEecCCcEEEEe
Q psy2113 122 -NSVKLWDLRSPK-----VPLFDML---GHEDKVMCVNWSDYRYIMSG 160 (183)
Q Consensus 122 -g~i~vwd~~~~~-----~~~~~~~---~~~~~v~~~~~~~~~~l~~~ 160 (183)
..|..++..... .....+. ........++|.++..|+.+
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~ 151 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVT 151 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEE
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEE
Confidence 577788776432 1111122 11123468899976444433
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.28 Score=34.32 Aligned_cols=117 Identities=7% Similarity=0.054 Sum_probs=69.9
Q ss_pred EeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeec--------------------CCcceEEEE
Q psy2113 48 LKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSS--------------------HKEWVQSVR 106 (183)
Q Consensus 48 ~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~--------------------~~~~v~~~~ 106 (183)
+.+.-....+++|.+++. +.++..++.|..||...... ..+.. ....+..++
T Consensus 14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~ 86 (322)
T 2fp8_A 14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDIS 86 (322)
T ss_dssp EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEE
T ss_pred cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-------EEEecccccccccccccccchhccccCCCCceEE
Confidence 334334456888988877 88888899999998765432 11110 113578899
Q ss_pred EecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc-----CCCcEEEEEecC-C-cEEEEecC-----------------
Q psy2113 107 WSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG-----HEDKVMCVNWSD-Y-RYIMSGGQ----------------- 162 (183)
Q Consensus 107 ~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-----~~~~v~~~~~~~-~-~~l~~~~~----------------- 162 (183)
+.+.+++ |..+...+.+..+|..++.. ..+.. .......+++.+ + ...++-..
T Consensus 87 ~~~~~g~-l~v~d~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 87 YNLQNNQ-LYIVDCYYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp EETTTTE-EEEEETTTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCC
T ss_pred EcCCCCc-EEEEECCCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCC
Confidence 9873444 44444455688888775432 12211 113468888887 6 44444322
Q ss_pred CCcEEEEEecCC
Q psy2113 163 DNSVRVFKTKHQ 174 (183)
Q Consensus 163 dg~i~iwd~~~~ 174 (183)
++.|..||..++
T Consensus 164 ~g~v~~~d~~~~ 175 (322)
T 2fp8_A 164 TGRLIKYDPSTK 175 (322)
T ss_dssp CEEEEEEETTTT
T ss_pred CceEEEEeCCCC
Confidence 366888886544
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.24 Score=38.61 Aligned_cols=70 Identities=9% Similarity=0.046 Sum_probs=39.3
Q ss_pred EEEecCCCCEEEEEeCCC-----------eEEEEeCCCCCcceEEe--ccCCCcE-EEEEec-CCcEEEEecCC------
Q psy2113 105 VRWSPIDPQLFVSASFDN-----------SVKLWDLRSPKVPLFDM--LGHEDKV-MCVNWS-DYRYIMSGGQD------ 163 (183)
Q Consensus 105 ~~~~p~~~~~l~~~~~dg-----------~i~vwd~~~~~~~~~~~--~~~~~~v-~~~~~~-~~~~l~~~~~d------ 163 (183)
+.+...++.+++.|+.++ .+.+||..+..- .... ....... .+.... ++..++.|+.+
T Consensus 404 v~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~ 482 (656)
T 1k3i_A 404 VMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN-TVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFE 482 (656)
T ss_dssp EEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE-EEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTC
T ss_pred EeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe-eEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcC
Confidence 333333567777777532 678888877653 2111 1112222 233344 55788888764
Q ss_pred -----CcEEEEEecCCC
Q psy2113 164 -----NSVRVFKTKHQP 175 (183)
Q Consensus 164 -----g~i~iwd~~~~~ 175 (183)
..+.+||+.+.+
T Consensus 483 ~~~~~~~v~~ydp~t~~ 499 (656)
T 1k3i_A 483 DSTPVFTPEIYVPEQDT 499 (656)
T ss_dssp CCSBCCCCEEEEGGGTE
T ss_pred CCCcccceEEEcCCCCc
Confidence 458999987643
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.26 Score=33.64 Aligned_cols=118 Identities=15% Similarity=0.216 Sum_probs=75.0
Q ss_pred EEeccCCCeeEEEEccC-CeEE-EEeCCCeEEEEEcCCCCCccCceeEEEee-cCCcceEEEEEecCCCCEEEEEeCCCe
Q psy2113 47 TLKGHKEAISAVQWTAV-DEII-TSSWDHTLKIWDAELGGMKKGAIVKSTFS-SHKEWVQSVRWSPIDPQLFVSASFDNS 123 (183)
Q Consensus 47 ~~~~h~~~v~~~~~~~~-~~l~-s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~ 123 (183)
.+.+-.+.+..++|+|+ +.|+ +...++.|...|.. ++. ...+. .-....-.|++.+ ++.++++.-.++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v------~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~ 92 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDL------IRTIPLDFVKDLETIEYIG-DNQFVISDERDYA 92 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCE------EEEEECSSCSSEEEEEECS-TTEEEEEETTTTE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCE------EEEEecCCCCChHHeEEeC-CCEEEEEECCCCc
Confidence 45566678999999975 5554 56778888888886 443 22332 2224577888888 6767676656788
Q ss_pred EEEEeCCCCCc--ceEEec------cCCCcEEEEEecCC-cEEEEecCCCcEEEEEec
Q psy2113 124 VKLWDLRSPKV--PLFDML------GHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 124 i~vwd~~~~~~--~~~~~~------~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~ 172 (183)
+.++++..... ...... ..+.....++|++. +.|+++.......+|.+.
T Consensus 93 l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~ 150 (255)
T 3qqz_A 93 IYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN 150 (255)
T ss_dssp EEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred EEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEc
Confidence 99998865442 011111 12334589999965 566666665555666554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=95.74 E-value=0.31 Score=34.17 Aligned_cols=117 Identities=7% Similarity=-0.031 Sum_probs=72.8
Q ss_pred cCCCeeEEEEcc-CCeEE-EEeCC-CeEEEEEcCCCCCccCceeEEEe-ecCCcceEEEEEecCCCCEEEEEeCCCeEEE
Q psy2113 51 HKEAISAVQWTA-VDEII-TSSWD-HTLKIWDAELGGMKKGAIVKSTF-SSHKEWVQSVRWSPIDPQLFVSASFDNSVKL 126 (183)
Q Consensus 51 h~~~v~~~~~~~-~~~l~-s~~~d-~~v~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~v 126 (183)
.......+++.| ++.|+ +.... +.|...++.... ...+ ...-.....++++|+++.++++-...+.|..
T Consensus 118 ~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-------~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~ 190 (316)
T 1ijq_A 118 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS 190 (316)
T ss_dssp TTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-------eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence 335668899987 45544 43333 688888876433 1122 2233457899999845555565556779999
Q ss_pred EeCCCCCcceEEec--cCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCC
Q psy2113 127 WDLRSPKVPLFDML--GHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 127 wd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+|+..... ..... ........+++..+..+++-...+.|..+|..+++
T Consensus 191 ~d~dg~~~-~~~~~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 191 IDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EecCCCce-EEEeecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCCc
Confidence 99975432 21221 12334577777666666777778889888876554
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.073 Score=41.90 Aligned_cols=114 Identities=8% Similarity=-0.015 Sum_probs=65.8
Q ss_pred CCeeEEEEccC-CeEEEEe-C-CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 53 EAISAVQWTAV-DEIITSS-W-DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 53 ~~v~~~~~~~~-~~l~s~~-~-d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
.....|++.|. +.|+... . .+.|.+.++..... .......-.....|+++|.++.++++-...+.|.++|+
T Consensus 496 ~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~------~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~ 569 (699)
T 1n7d_A 496 SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDV 569 (699)
T ss_dssp CCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC------CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECS
T ss_pred CCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe------eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEcc
Confidence 34567788764 4443332 2 26777777654322 11111122346789999855667676667789999999
Q ss_pred CCCCcceEEec--cCCCcEEEEEecCCcEEEEecCCCcEEEEEecC
Q psy2113 130 RSPKVPLFDML--GHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 130 ~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~ 173 (183)
..... ..... ........|++..+.++++....+.|..+|..+
T Consensus 570 dG~~~-~~~~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~ 614 (699)
T 1n7d_A 570 NGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLT 614 (699)
T ss_dssp SSSCC-EEECCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTT
T ss_pred CCCce-EEEEecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccC
Confidence 75432 22221 112233455555556666777778888888654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.26 Score=33.08 Aligned_cols=149 Identities=8% Similarity=-0.044 Sum_probs=74.5
Q ss_pred EEEEEeecCcEEEEEEeccCCCCcccccccCc-cceEEEe--ccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCcc
Q psy2113 11 LGVIFMTVGALLTLTNIEVTSLPSFFQLILQK-TPLITLK--GHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~ 87 (183)
..++|+|+|.+.++.+=++|..+......... ..-..+- +-. ....+.|.+++.|.++ .||.|+-++..+....
T Consensus 44 ~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~- 120 (236)
T 1tl2_A 44 KFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTD- 120 (236)
T ss_dssp SEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTC-
T ss_pred eeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCC-
Confidence 37899999999888332233222100000000 0111110 111 2467888899987777 6699887775332211
Q ss_pred CceeE-EEe-ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc-----ceEEe-ccCCCcEEEEEecCCcEEEE
Q psy2113 88 GAIVK-STF-SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV-----PLFDM-LGHEDKVMCVNWSDYRYIMS 159 (183)
Q Consensus 88 ~~~~~-~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~-~~~~~~v~~~~~~~~~~l~~ 159 (183)
...-. ..+ ..-=..+..|.+.| ++.+.+.. |+.++-+...+... ....+ ...-..-..+.|.++..|..
T Consensus 121 ~Wl~~a~~vg~~gw~~~~~lff~p-~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~ 197 (236)
T 1tl2_A 121 NWIARATEVGSGGWSGFKFLFFHP-NGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFG 197 (236)
T ss_dssp CHHHHSEEEECSSGGGEEEEEECT-TSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEE
T ss_pred ceeccccEeccCCCCceEEEEECC-CceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEE
Confidence 10000 011 11114579999999 88666655 78765443332221 01111 12223345566887766655
Q ss_pred ecCCCcE
Q psy2113 160 GGQDNSV 166 (183)
Q Consensus 160 ~~~dg~i 166 (183)
+. +|.+
T Consensus 198 v~-~g~~ 203 (236)
T 1tl2_A 198 VQ-GGKF 203 (236)
T ss_dssp EE-TTEE
T ss_pred Ee-CCeE
Confidence 55 7744
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.4 Score=35.35 Aligned_cols=112 Identities=11% Similarity=0.108 Sum_probs=65.6
Q ss_pred CeeEEEEcc--CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCC-EEEEEeCCC----eEEE
Q psy2113 54 AISAVQWTA--VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQ-LFVSASFDN----SVKL 126 (183)
Q Consensus 54 ~v~~~~~~~--~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg----~i~v 126 (183)
....|+++| ++.|..+...+.|+.+|+..... ..+.........+++++ +++ ++++...++ .+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v-------~~~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~ 209 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV-------STVYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYI 209 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE-------EEEECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE-------EEEecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEE
Confidence 346788886 36666665558888899876542 23333445688999999 777 444443222 3444
Q ss_pred EeCCCCCcceEEeccCCCcEEEEEecC-C-cEEEEecCCCcEEEEEecCC
Q psy2113 127 WDLRSPKVPLFDMLGHEDKVMCVNWSD-Y-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 127 wd~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
.+..........+. .......++++| + ..+++-..++.|..++....
T Consensus 210 ~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~ 258 (430)
T 3tc9_A 210 LTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ 258 (430)
T ss_dssp EEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred EeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence 44332211112222 123456778887 4 55556666788999987654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=95.67 E-value=0.34 Score=34.12 Aligned_cols=119 Identities=7% Similarity=-0.036 Sum_probs=75.5
Q ss_pred cCCCeeEEEEccC-CeEEEEe--CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEE
Q psy2113 51 HKEAISAVQWTAV-DEIITSS--WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 127 (183)
Q Consensus 51 h~~~v~~~~~~~~-~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vw 127 (183)
.......+++.|. +.|+... ..+.|...++..... .......-.....++++|+++.+..+=...+.|..+
T Consensus 120 ~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~------~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~ 193 (318)
T 3sov_A 120 ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR------FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKS 193 (318)
T ss_dssp SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe------EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence 3445678898864 6654443 357888888764332 111222234568999999555555655667899999
Q ss_pred eCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 128 DLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 128 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|+..... .............+++..+..+.+-...+.|..+|..+++.
T Consensus 194 d~dG~~~-~~~~~~~~~~P~glav~~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 194 NLDGTNR-QAVVKGSLPHPFALTLFEDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp ETTSCSC-EEEECSCCSCEEEEEEETTEEEEEETTTTEEEEEETTTCCS
T ss_pred cCCCCce-EEEecCCCCCceEEEEeCCEEEEEecCCCeEEEEECCCCCc
Confidence 9875432 22233334556777776666777777788899998866553
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=95.64 E-value=0.029 Score=43.04 Aligned_cols=107 Identities=7% Similarity=0.014 Sum_probs=65.9
Q ss_pred CeeEEEEccCCe--EEEEeCCCeEEEEEcCCCC------CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEE
Q psy2113 54 AISAVQWTAVDE--IITSSWDHTLKIWDAELGG------MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125 (183)
Q Consensus 54 ~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~------~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 125 (183)
...++.++|+|+ ++++..+.+|.++|+.+.+ ............ -......++|+| ++...++.-.|+.|.
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVV 355 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEE
Confidence 446789999987 4566678999999998532 111112222222 234578899999 676566667799999
Q ss_pred EEeCCCC---------CcceEEeccCCCcEE-EE----EecC-CcEEEEecC
Q psy2113 126 LWDLRSP---------KVPLFDMLGHEDKVM-CV----NWSD-YRYIMSGGQ 162 (183)
Q Consensus 126 vwd~~~~---------~~~~~~~~~~~~~v~-~~----~~~~-~~~l~~~~~ 162 (183)
+||+.+. ...+..+..|..+.. +. ..++ +++|++...
T Consensus 356 kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk 407 (595)
T 1fwx_A 356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK 407 (595)
T ss_dssp EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred EEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence 9999761 222555555544321 11 2233 477776543
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.4 Score=33.79 Aligned_cols=114 Identities=5% Similarity=-0.030 Sum_probs=67.0
Q ss_pred cCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEe-ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 51 HKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTF-SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 51 h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
....+..+.+.+++.++.++.+|.+++.+...+.. ......- ......+..+.+.+ ++.+++.+. +|.+ ++..
T Consensus 203 ~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~t---W~~~~~~~~~~~~~~~~v~~~~-~~~~~~~g~-~g~i-~~S~ 276 (327)
T 2xbg_A 203 TSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSEN---WGELLSPLRRNSVGFLDLAYRT-PNEVWLAGG-AGAL-LCSQ 276 (327)
T ss_dssp SSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEE---ECCCBCTTSSCCSCEEEEEESS-SSCEEEEES-TTCE-EEES
T ss_pred CCCccceeEECCCCCEEEEeCCceEEEecCCCCCe---eEeccCCcccCCcceEEEEecC-CCEEEEEeC-CCeE-EEeC
Confidence 45578888888888887888888888764221110 0000000 01223578898988 666666654 6766 3334
Q ss_pred CCCCcceEEec---cCCCcEEEEEecCCcEEEEecCCCcEEEEEe
Q psy2113 130 RSPKVPLFDML---GHEDKVMCVNWSDYRYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 130 ~~~~~~~~~~~---~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~ 171 (183)
..++. =.... .....+..+.|.++..+++++.+|.|.-++-
T Consensus 277 DgG~t-W~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 277 DGGQT-WQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp STTSS-CEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred CCCcc-cEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence 43432 12222 2345678888875566777788998877654
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=95.43 E-value=0.43 Score=33.64 Aligned_cols=156 Identities=6% Similarity=-0.063 Sum_probs=86.7
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEcc-CCe-EEEEeCCCeEEEEEcCCCCCcc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-VDE-IITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~-l~s~~~d~~v~vwd~~~~~~~~ 87 (183)
..+++|.+....+...++....+.....+... .....+........++++.+ ++. +++-...+.|.++++.....
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~-~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-- 113 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE-SVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-- 113 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSS-CCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCC-ceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE--
Confidence 45677877666655555332222111111111 11112222233456788874 455 45556678999999875432
Q ss_pred CceeEEEeecCCcceEEEEEecCCCCEEEEEe-CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-Cc-EEEEecCCC
Q psy2113 88 GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS-FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YR-YIMSGGQDN 164 (183)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~dg 164 (183)
.............+++.|.++.++.+-. ..+.|...++..... .......-...+.+++++ +. ..++-+..+
T Consensus 114 ----~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~ 188 (318)
T 3sov_A 114 ----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLN 188 (318)
T ss_dssp ----EEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ----EEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-EEEEECCCCCccEEEEeccCCEEEEEECCCC
Confidence 1122234456789999984454455442 357888888864332 222223334568999995 44 445556677
Q ss_pred cEEEEEecC
Q psy2113 165 SVRVFKTKH 173 (183)
Q Consensus 165 ~i~iwd~~~ 173 (183)
.|..+|+..
T Consensus 189 ~I~~~d~dG 197 (318)
T 3sov_A 189 FIHKSNLDG 197 (318)
T ss_dssp EEEEEETTS
T ss_pred EEEEEcCCC
Confidence 899998764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.5 Score=37.00 Aligned_cols=72 Identities=11% Similarity=0.166 Sum_probs=47.9
Q ss_pred EEEEecCCCCEEEEEeCCC-------------------eEEEEeCCCCCcceEEecc--CC-------CcEEEEEec-CC
Q psy2113 104 SVRWSPIDPQLFVSASFDN-------------------SVKLWDLRSPKVPLFDMLG--HE-------DKVMCVNWS-DY 154 (183)
Q Consensus 104 ~~~~~p~~~~~l~~~~~dg-------------------~i~vwd~~~~~~~~~~~~~--~~-------~~v~~~~~~-~~ 154 (183)
.+++.| ...+++.+..++ .|.-+|.++++. +-.++. |. .+....... ++
T Consensus 234 ~~a~d~-~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~-~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 234 SMAYDP-ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKL-AWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp CEEEET-TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCE-EEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ceEEcC-CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCce-eeEeecCCCccccccCCCCcEEEEeccCC
Confidence 467888 566777777665 499999999985 433332 22 222222222 33
Q ss_pred ---cEEEEecCCCcEEEEEecCCCCC
Q psy2113 155 ---RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 155 ---~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
..++.++.+|.++++|.++++..
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~~l 337 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGKLI 337 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred cEEEEEEEECCCCEEEEEECCCCCEe
Confidence 36889999999999999888754
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.55 Score=33.10 Aligned_cols=107 Identities=5% Similarity=-0.037 Sum_probs=60.4
Q ss_pred CCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeC--C
Q psy2113 53 EAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDL--R 130 (183)
Q Consensus 53 ~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~--~ 130 (183)
+.+..+.+.+++.++.++.++.+. ....... .. ..........+..+.+.| ++.+++.+...+..+-+|- .
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~--~S~DgG~--tW--~~~~~~~~~~~~~~~~~~-~~~~~~~g~~G~~~~S~d~gG~ 194 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIY--RTKDSGK--NW--QALVQEAIGVMRNLNRSP-SGEYVAVSSRGSFYSTWEPGQT 194 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEE--EESSTTS--SE--EEEECSCCCCEEEEEECT-TSCEEEEETTSSEEEEECTTCS
T ss_pred CCeEEEEEECCCCEEEEeCCccEE--EEcCCCC--CC--EEeecCCCcceEEEEEcC-CCcEEEEECCCcEEEEeCCCCC
Confidence 456778777667765555666543 2222211 11 111224456788999998 6777766654334444443 2
Q ss_pred CCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEE
Q psy2113 131 SPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVF 169 (183)
Q Consensus 131 ~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iw 169 (183)
+.+ .........+..+.+.++..++.++.+|.+++.
T Consensus 195 tW~---~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s 230 (327)
T 2xbg_A 195 AWE---PHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFS 230 (327)
T ss_dssp SCE---EEECCSSSCEEEEEECTTSCEEEEETTTEEEEE
T ss_pred cee---ECCCCCCCccceeEECCCCCEEEEeCCceEEEe
Confidence 222 122344567888888866555566667877766
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.71 Score=34.07 Aligned_cols=112 Identities=7% Similarity=0.035 Sum_probs=64.2
Q ss_pred CeeEEEEccC---CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC---C-eEEE
Q psy2113 54 AISAVQWTAV---DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD---N-SVKL 126 (183)
Q Consensus 54 ~v~~~~~~~~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d---g-~i~v 126 (183)
.-..|+|.|+ +.|..+...+.|+.+|..++.. ..+.........+++++ +++++++-... . .+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v-------~~~~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~ 211 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYV-------DIKTTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYL 211 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEE-------EEECCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEE-------EEeecCCCCccEEEECC-CCCEEEEcCCCCcccceEEE
Confidence 3568899874 6776665558899999876552 23333445689999999 77765554321 1 2333
Q ss_pred EeCCCCCcceEEeccCCCcEEEEEecC-C-cEEEEecCCCcEEEEEecCC
Q psy2113 127 WDLRSPKVPLFDMLGHEDKVMCVNWSD-Y-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 127 wd~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
.+..........+. .......+++++ + .+.++-..++.|+.+|..++
T Consensus 212 ~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g 260 (433)
T 4hw6_A 212 FTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATG 260 (433)
T ss_dssp ECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTC
T ss_pred EECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCC
Confidence 33322211011111 223446677776 4 44445556677888887644
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.43 Score=36.92 Aligned_cols=106 Identities=6% Similarity=0.082 Sum_probs=62.6
Q ss_pred CCeEEEEeC-CCeEEEEEc-CCCCCccCceeEEEeecCCc-----------ceEEEEEecCCCCE----EEEEeCCCeEE
Q psy2113 63 VDEIITSSW-DHTLKIWDA-ELGGMKKGAIVKSTFSSHKE-----------WVQSVRWSPIDPQL----FVSASFDNSVK 125 (183)
Q Consensus 63 ~~~l~s~~~-d~~v~vwd~-~~~~~~~~~~~~~~~~~~~~-----------~v~~~~~~p~~~~~----l~~~~~dg~i~ 125 (183)
++.++.++. ++.|.-+|. ++++. +..+..... ....+++.| .+.. ++.++.|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------lW~~~~~~~~~~~~~~~~~~~~~g~av~p-~~g~~~~rV~v~t~dg~l~ 134 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTI------LWQDKPKQNPAARAVACCDLVNRGLAYWP-GDGKTPALILKTQLDGNVA 134 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------EEEECCCCCGGGGGGCSSCSCCCCCEEEC-CCSSSCCEEEEECTTSEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcE------EEEECCCCCccccccccccccccceEEEe-cCCcceeEEEEEcCCCEEE
Confidence 567777777 889999998 77765 333322111 012345544 2333 77788899999
Q ss_pred EEeCCCCCcceEEeccCC----CcEEE-EEecCCcEEEEec------CCCcEEEEEecCCCCC
Q psy2113 126 LWDLRSPKVPLFDMLGHE----DKVMC-VNWSDYRYIMSGG------QDNSVRVFKTKHQPKS 177 (183)
Q Consensus 126 vwd~~~~~~~~~~~~~~~----~~v~~-~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~ 177 (183)
-+|.++++. +-...... ..+.+ -... +..++.++ .+|.|+-+|.++++..
T Consensus 135 AlDa~TG~~-~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 135 ALNAETGET-VWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEETTTCCE-EEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEECCCCCE-EEeecCCCCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 999999985 33222111 01111 0112 34555555 3789999999988753
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=1.2 Score=34.69 Aligned_cols=154 Identities=5% Similarity=-0.006 Sum_probs=88.6
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEE-EeccCCCeeEEEEcc-CCe-EEEEeCCCeEEEEEcCCCCCc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLIT-LKGHKEAISAVQWTA-VDE-IITSSWDHTLKIWDAELGGMK 86 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~~-~~~-l~s~~~d~~v~vwd~~~~~~~ 86 (183)
..+++|++....+...+.....+..... .+..... +.........|++.. .+. +++-...+.|.+.++.....
T Consensus 39 ~~~l~~d~~~~~lywtD~~~~~I~r~~~---~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~- 114 (628)
T 4a0p_A 39 ASALDFDVTDNRIYWTDISLKTISRAFM---NGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR- 114 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEET---TSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-
T ss_pred eEEEEEECCCCEEEEEECCCCeEEEEEC---CCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-
Confidence 5688899877777766643222211111 1111122 222224566888873 355 45656678999999875432
Q ss_pred cCceeEEEeecCCcceEEEEEecCCCCEEEEE-eCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-Cc-EEEEecCC
Q psy2113 87 KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA-SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YR-YIMSGGQD 163 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~l~~~~~d 163 (183)
...+...-.....+++.|..+.++.+- +..+.|...++..... ..+...-.....+++++ ++ ..++-...
T Consensus 115 -----~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~--~~l~~~~~~P~GlalD~~~~~LY~aD~~~ 187 (628)
T 4a0p_A 115 -----QVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER--TTLVPNVGRANGLTIDYAKRRLYWTDLDT 187 (628)
T ss_dssp -----EEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC--EEEECSCSSEEEEEEETTTTEEEEEETTT
T ss_pred -----EEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce--EEEECCCCCcceEEEccccCEEEEEECCC
Confidence 112223344578999999555555543 2256888888765442 22223445678899885 34 44555566
Q ss_pred CcEEEEEecCC
Q psy2113 164 NSVRVFKTKHQ 174 (183)
Q Consensus 164 g~i~iwd~~~~ 174 (183)
+.|...|+...
T Consensus 188 ~~I~~~d~dG~ 198 (628)
T 4a0p_A 188 NLIESSNMLGL 198 (628)
T ss_dssp TEEEEEETTSC
T ss_pred CEEEEEcCCCC
Confidence 78888887653
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.61 E-value=1.1 Score=33.91 Aligned_cols=116 Identities=9% Similarity=0.082 Sum_probs=68.5
Q ss_pred CeeEEEE-------ccCCe-EEEEeCCC-------eEEEEEcCC-CCCcc-C-ceeEEEeecCCcceEEEEEecCCCCEE
Q psy2113 54 AISAVQW-------TAVDE-IITSSWDH-------TLKIWDAEL-GGMKK-G-AIVKSTFSSHKEWVQSVRWSPIDPQLF 115 (183)
Q Consensus 54 ~v~~~~~-------~~~~~-l~s~~~d~-------~v~vwd~~~-~~~~~-~-~~~~~~~~~~~~~v~~~~~~p~~~~~l 115 (183)
....|+| .+++. |+.+...+ .+.+.+... +.... . ......+ .....++++|+++.++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~----~~p~giavdp~~g~LY 262 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY----KQCNGATIHPINGELY 262 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE----SCCCCEEECTTTCCEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC----CCceEEEEcCCCCeEE
Confidence 5789999 87765 66555443 255665333 12210 0 0112221 2346778899667777
Q ss_pred EEEeCCCeEEEEeCC-------CCCc-----c-----eEE-e-ccCCCcEEEEEecCC-c-EEEEecCCCcEEEEEecC
Q psy2113 116 VSASFDNSVKLWDLR-------SPKV-----P-----LFD-M-LGHEDKVMCVNWSDY-R-YIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 116 ~~~~~dg~i~vwd~~-------~~~~-----~-----~~~-~-~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~ 173 (183)
++-..++.|..+|+. ++.. + ... . .+.......++|+|+ + ..++-+....|+.++...
T Consensus 263 vtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 263 FNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp EEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 777788999999997 4442 0 111 1 122345688999966 5 355556677888876543
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=94.49 E-value=0.97 Score=32.93 Aligned_cols=119 Identities=7% Similarity=-0.028 Sum_probs=73.8
Q ss_pred cCCCeeEEEEcc-CCeEEEEe--CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEE
Q psy2113 51 HKEAISAVQWTA-VDEIITSS--WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 127 (183)
Q Consensus 51 h~~~v~~~~~~~-~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vw 127 (183)
.......|++.| .+.|+-.. ..+.|...++..... .......-.....|+++|.++.+.++=...+.|..+
T Consensus 200 ~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~------~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~ 273 (400)
T 3p5b_L 200 NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI 273 (400)
T ss_dssp SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSC------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCcc------EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEE
Confidence 344578899987 45544333 247888888865432 112222335678999998455555555567799999
Q ss_pred eCCCCCcceEEec--cCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 128 DLRSPKVPLFDML--GHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 128 d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|+..... ..... ........++...+..+++-...+.|..+|..+++.
T Consensus 274 d~dG~~~-~~~~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G~~ 323 (400)
T 3p5b_L 274 DVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSD 323 (400)
T ss_dssp ETTSCCC-EEEEECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSCCC
T ss_pred eCCCCcc-EEEEeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCCCc
Confidence 9875443 22222 123445677776666777777778898888655543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.41 E-value=1.6 Score=35.07 Aligned_cols=155 Identities=8% Similarity=-0.013 Sum_probs=86.8
Q ss_pred EEEEEeecCcEEEEEEeccCCCCcccccccCccceEEE-eccCCCeeEEEEccC-CeEEEEe-C-CCeEEEEEcCCCCCc
Q psy2113 11 LGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITL-KGHKEAISAVQWTAV-DEIITSS-W-DHTLKIWDAELGGMK 86 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~-~~l~s~~-~-d~~v~vwd~~~~~~~ 86 (183)
.++++.+.+..|...+.....+... ...+.....+ .........|++.|. +.|+-.. . .+.|.+.++.....
T Consensus 474 ~GLAvD~~~~~LY~tD~~~~~I~v~---~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~- 549 (791)
T 3m0c_C 474 DGLAVDWIHSNIYWTDSVLGTVSVA---DTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI- 549 (791)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEE---ETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-
T ss_pred ceeeeeecCCcEEEEecCCCeEEEE---eCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce-
Confidence 4677777666665555221111111 1122222233 233445789999875 5654433 3 37888888865432
Q ss_pred cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc--CCCcEEEEEecCCcEEEEecCCC
Q psy2113 87 KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG--HEDKVMCVNWSDYRYIMSGGQDN 164 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~dg 164 (183)
...+...-.....|++.+.++.++++=...+.|...++..... ...... .-.....|+...+.++++-...+
T Consensus 550 -----~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~~~~lYwtD~~~~ 623 (791)
T 3m0c_C 550 -----YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFEDKVFWTDIINE 623 (791)
T ss_dssp -----EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEETTEEEEEETTTT
T ss_pred -----EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEeCCEEEEEECCCC
Confidence 1122223356889999984555555555567899999875443 222222 22345667766656666666677
Q ss_pred cEEEEEecCCC
Q psy2113 165 SVRVFKTKHQP 175 (183)
Q Consensus 165 ~i~iwd~~~~~ 175 (183)
.|...|..+++
T Consensus 624 ~I~~~dk~tG~ 634 (791)
T 3m0c_C 624 AIFSANRLTGS 634 (791)
T ss_dssp EEEEEETTTCC
T ss_pred EEEEEeCCCCc
Confidence 78777765553
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.30 E-value=0.057 Score=38.58 Aligned_cols=109 Identities=6% Similarity=-0.004 Sum_probs=62.2
Q ss_pred CCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecC-CcceEEEEE--ecCCCCEEEEE-eCCCeEEEEeCCCCCcceEE
Q psy2113 63 VDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH-KEWVQSVRW--SPIDPQLFVSA-SFDNSVKLWDLRSPKVPLFD 138 (183)
Q Consensus 63 ~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--~p~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~ 138 (183)
++.++.++.||.++-.|..+++. ...+... ..++....- .+.++..++.. ..||.+..+|..++.. ...
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~------~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-~~~ 82 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHI------IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-KLP 82 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEE------EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-EEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcE------EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-Eee
Confidence 45688899999999999887765 4444332 112222110 01122333333 5799999999887743 211
Q ss_pred ecc----CCCcEEE---EEe------cCCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 139 MLG----HEDKVMC---VNW------SDYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 139 ~~~----~~~~v~~---~~~------~~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
... ..+++.. ... +.+..+++|+.+|.+...|+++++...
T Consensus 83 ~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W 135 (339)
T 2be1_A 83 LSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIIS 135 (339)
T ss_dssp EEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEE
T ss_pred eccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEE
Confidence 110 1122221 000 135788899999999988888876543
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=94.07 E-value=2.3 Score=35.71 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=67.3
Q ss_pred CeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCC-----CCEEEEEeC-CCeEEEE
Q psy2113 54 AISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID-----PQLFVSASF-DNSVKLW 127 (183)
Q Consensus 54 ~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~-----~~~l~~~~~-dg~i~vw 127 (183)
.|...+.+. .+++.++ ++.+.++++..++... ... ..-...|.|+++.|.. ..+++.|.. |++++++
T Consensus 515 ~I~~As~n~-~~vvva~-g~~l~~fel~~~~L~~----~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~ 587 (1158)
T 3ei3_A 515 NISVASCNS-SQVVVAV-GRALYYLQIHPQELRQ----ISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARIL 587 (1158)
T ss_dssp CCCEEEECS-SEEEEEE-TTEEEEEEEETTEEEE----EEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEE
T ss_pred EEEEEEeCC-CEEEEEE-CCEEEEEEeeCCceee----ecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEE
Confidence 454444332 3444444 5778788776533211 111 1235679999997622 368888886 9999999
Q ss_pred eCCCCCcceEEe-ccCCCcEEEEEec--CC-cEEEEecCCCcEEEEEec
Q psy2113 128 DLRSPKVPLFDM-LGHEDKVMCVNWS--DY-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 128 d~~~~~~~~~~~-~~~~~~v~~~~~~--~~-~~l~~~~~dg~i~iwd~~ 172 (183)
++.+.+. +... .+....+.++... .+ .+|..|-.||.+.-+.+.
T Consensus 588 sL~~l~~-~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 588 KLPSFEL-LHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp ETTTCCE-EEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred ECCCCCe-EEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 9987553 3221 1222344555443 33 688999999998766654
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=93.77 E-value=1.1 Score=31.01 Aligned_cols=155 Identities=12% Similarity=0.132 Sum_probs=79.2
Q ss_pred ceeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeC--CC-eEEEEEcCCCC
Q psy2113 8 ILTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSW--DH-TLKIWDAELGG 84 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~--d~-~v~vwd~~~~~ 84 (183)
....++++++++.++.+.. ....+..+ +. .......+ ........+++.+++.++.+.. ++ .+..+|..+++
T Consensus 32 ~~pegia~~~~g~lyv~d~-~~~~I~~~--d~-~g~~~~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~ 106 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNH-EVGEIVSI--TP-DGNQQIHA-TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT 106 (306)
T ss_dssp CCEEEEEECTTSCEEEEET-TTTEEEEE--CT-TCCEEEEE-ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC
T ss_pred CCcceEEECCCCCEEEEeC-CCCeEEEE--CC-CCceEEEE-eCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe
Confidence 4567889999988655532 11111111 11 11222222 2234678999998887655542 22 46666765554
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe---------ccCCCcEEEEEecCCc
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM---------LGHEDKVMCVNWSDYR 155 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------~~~~~~v~~~~~~~~~ 155 (183)
... .... ........++..+ ++..+++-..++.|.++|...++..+... ...-...+.+....+.
T Consensus 107 ~~~----~~~~-~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~ 180 (306)
T 2p4o_A 107 VET----LLTL-PDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNF 180 (306)
T ss_dssp EEE----EEEC-TTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTE
T ss_pred EEE----EEeC-CCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCE
Confidence 310 1111 1122334455445 55455555468899999987542101100 0111234556222224
Q ss_pred EEEEecCCCcEEEEEecC
Q psy2113 156 YIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 156 ~l~~~~~dg~i~iwd~~~ 173 (183)
.+++-...+.|..+++..
T Consensus 181 lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 181 LYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp EEEEETTTTEEEEEEBCT
T ss_pred EEEEeCCCCEEEEEEeCC
Confidence 556666788999999875
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=93.69 E-value=1.1 Score=30.61 Aligned_cols=159 Identities=9% Similarity=0.044 Sum_probs=84.1
Q ss_pred eeEEEEEeecCcEEE-EEEeccCCCCcccccccCccceEEEec-cCCCeeEEEEccCCeEE-EEeCCCeEEEEEcCCCCC
Q psy2113 9 LTLGVIFMTVGALLT-LTNIEVTSLPSFFQLILQKTPLITLKG-HKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~l~-s~~~d~~v~vwd~~~~~~ 85 (183)
...+++|+|++..+. +.+ +--.+..+ +. .++.+..+.- -......|++.+++.++ +.-.++.+.++++.....
T Consensus 28 ~lSGla~~~~~~~L~aV~d-~~~~I~~l--d~-~g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~ 103 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTIN-KPAAIVEM--TT-NGDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE 103 (255)
T ss_dssp CEEEEEEETTTTEEEEEEE-TTEEEEEE--ET-TCCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred CcceeEEeCCCCEEEEEEC-CCCeEEEE--eC-CCCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence 467899999766554 444 21111111 12 2445555432 22457788998888864 444678899998865442
Q ss_pred ccCceeEEEe----ecCCcceEEEEEecCCCCEEEEEeCCC-eEEEEeCC-CCCcceEEec-------cCCCcEEEEEec
Q psy2113 86 KKGAIVKSTF----SSHKEWVQSVRWSPIDPQLFVSASFDN-SVKLWDLR-SPKVPLFDML-------GHEDKVMCVNWS 152 (183)
Q Consensus 86 ~~~~~~~~~~----~~~~~~v~~~~~~p~~~~~l~~~~~dg-~i~vwd~~-~~~~~~~~~~-------~~~~~v~~~~~~ 152 (183)
... .....+ .......-.++++|.+.+++++.-.+. .|+.|+-. .... ..... .+...+..++++
T Consensus 104 i~~-~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~-l~i~~~~~~~~~~~~~d~S~l~~d 181 (255)
T 3qqz_A 104 VKI-LKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNE-LHISKDKALQRQFTLDDVSGAEFN 181 (255)
T ss_dssp EEE-EEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSC-CEEEECHHHHHTCCSSCCCEEEEE
T ss_pred eee-eeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCc-eeeecchhhccccccCCceeEEEc
Confidence 110 001111 123455789999994334444443343 45555511 1111 22221 123356788888
Q ss_pred CC--cEEEEecCCCcEEEEEecC
Q psy2113 153 DY--RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 153 ~~--~~l~~~~~dg~i~iwd~~~ 173 (183)
|. .+++....+..|..+|...
T Consensus 182 p~tg~lliLS~~s~~L~~~d~~g 204 (255)
T 3qqz_A 182 QQKNTLLVLSHESRALQEVTLVG 204 (255)
T ss_dssp TTTTEEEEEETTTTEEEEECTTC
T ss_pred CCCCeEEEEECCCCeEEEEcCCC
Confidence 64 5666666667777777553
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=1.1 Score=34.41 Aligned_cols=104 Identities=11% Similarity=0.113 Sum_probs=61.1
Q ss_pred CCeEEEEeC-CCeEEEEEc-CCCCCccCceeEEEeecCCc----------ce-EEEEEecCCCCEEEEEeCCCeEEEEeC
Q psy2113 63 VDEIITSSW-DHTLKIWDA-ELGGMKKGAIVKSTFSSHKE----------WV-QSVRWSPIDPQLFVSASFDNSVKLWDL 129 (183)
Q Consensus 63 ~~~l~s~~~-d~~v~vwd~-~~~~~~~~~~~~~~~~~~~~----------~v-~~~~~~p~~~~~l~~~~~dg~i~vwd~ 129 (183)
++.++.++. ++.+.-+|. .+++. +..+..... .+ ..+.. .+..++.++.|+.+..+|.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~------~W~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~v~~~dg~l~alD~ 132 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKI------VWQHKPKQDASTKAVMCCDVVDRGLAY---GAGQIVKKQANGHLLALDA 132 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSE------EEEECCCCCGGGGGGCTTCSCCCCCEE---ETTEEEEECTTSEEEEEET
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccE------EEEEcCCCCccccccccccccccccEE---ECCEEEEEeCCCEEEEEEC
Confidence 567777777 889999998 77765 333321110 00 11222 2346777788999999999
Q ss_pred CCCCcceEEeccCC----CcEEE-EEecCCcEEEEecC------CCcEEEEEecCCCCC
Q psy2113 130 RSPKVPLFDMLGHE----DKVMC-VNWSDYRYIMSGGQ------DNSVRVFKTKHQPKS 177 (183)
Q Consensus 130 ~~~~~~~~~~~~~~----~~v~~-~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~ 177 (183)
++++. +-...... ..+.+ .... +..++.++. ++.|..+|.++++..
T Consensus 133 ~tG~~-~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~ 189 (571)
T 2ad6_A 133 KTGKI-NWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELK 189 (571)
T ss_dssp TTCCE-EEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEE
T ss_pred CCCCE-EEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEE
Confidence 99985 33222111 01111 0111 345555554 789999999887754
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=93.65 E-value=2 Score=33.42 Aligned_cols=156 Identities=6% Similarity=-0.065 Sum_probs=88.4
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEcc-CCe-EEEEeCCCeEEEEEcCCCCCcc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-VDE-IITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~-l~s~~~d~~v~vwd~~~~~~~~ 87 (183)
..+++|++.+..+...++....+.....+.. ......+.........+++.+ ++. +++-...+.|.+.++.....
T Consensus 42 ~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~-~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~-- 118 (619)
T 3s94_A 42 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT-ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-- 118 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred eEEEEEEeCCCEEEEEECCCCeEEEEEccCC-CceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCE--
Confidence 5688899877777766643222211111111 111222333335678899986 455 45556778999999876442
Q ss_pred CceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-C-cEEEEecCCC
Q psy2113 88 GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-Y-RYIMSGGQDN 164 (183)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~l~~~~~dg 164 (183)
.......-.....|++.|..+.++.+--. .+.|...++..... .......-...+.+++++ + .+.++-...+
T Consensus 119 ----~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~~~~P~Glald~~~~~LY~aD~~~~ 193 (619)
T 3s94_A 119 ----KVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-FIIINSEIYWPNGLTLDYEEQKLYWADAKLN 193 (619)
T ss_dssp ----EEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSSEEEEEEETTTTEEEEEETTTC
T ss_pred ----EEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-EEEEeCCCCCCcEEEEEccCCEEEEEeCCCC
Confidence 11222334456789999954555555422 46777777764332 223333345678899884 3 4445555667
Q ss_pred cEEEEEecC
Q psy2113 165 SVRVFKTKH 173 (183)
Q Consensus 165 ~i~iwd~~~ 173 (183)
.|...|+..
T Consensus 194 ~I~~~~~dG 202 (619)
T 3s94_A 194 FIHKSNLDG 202 (619)
T ss_dssp CEEEESSSC
T ss_pred eEEEecCCC
Confidence 788888764
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=1.5 Score=31.43 Aligned_cols=103 Identities=12% Similarity=0.075 Sum_probs=59.1
Q ss_pred cCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEe---ecCCcceEEEEEecC---CCCEEEEEeC---C
Q psy2113 51 HKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTF---SSHKEWVQSVRWSPI---DPQLFVSASF---D 121 (183)
Q Consensus 51 h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~p~---~~~~l~~~~~---d 121 (183)
.-..-..++|.|++.|+.+..++.|+++|. .+. . ....+ .........++++|+ ++.++++-.. +
T Consensus 27 ~l~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~-~----~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~ 100 (354)
T 3a9g_A 27 DLEVPWSIAPLGGGRYLVTERPGRLVLISP-SGK-K----LVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEG 100 (354)
T ss_dssp SCSCEEEEEEEETTEEEEEETTTEEEEECS-SCE-E----EEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGG
T ss_pred CCCCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCc-e----EeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCC
Confidence 344567999999999888888899998873 222 1 12111 112346889999994 3555554432 3
Q ss_pred ----CeEEEEeCCCCC------cce-EEec-cCCCcEEEEEecCC-cEEEE
Q psy2113 122 ----NSVKLWDLRSPK------VPL-FDML-GHEDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 122 ----g~i~vwd~~~~~------~~~-~~~~-~~~~~v~~~~~~~~-~~l~~ 159 (183)
..|..|+..... ..+ ..+. ........++|.|+ .+.++
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt 151 (354)
T 3a9g_A 101 GHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYIT 151 (354)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEE
T ss_pred CCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEE
Confidence 567777766441 101 1122 11123467889866 44444
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=93.05 E-value=1.7 Score=31.01 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=46.0
Q ss_pred CCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeE-EEeecCCcceEEEEEecC---CCCEEEEEeC------
Q psy2113 52 KEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVK-STFSSHKEWVQSVRWSPI---DPQLFVSASF------ 120 (183)
Q Consensus 52 ~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~p~---~~~~l~~~~~------ 120 (183)
-..-..|+|.|++. ++.+...+.|++++... .......-. ............++++|+ ++.+.++-..
T Consensus 17 l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 17 LDHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp ESSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 34567999999998 88888899999998532 111000000 011122345789999994 3545554332
Q ss_pred -CCeEEEEeCCC
Q psy2113 121 -DNSVKLWDLRS 131 (183)
Q Consensus 121 -dg~i~vwd~~~ 131 (183)
...|..++...
T Consensus 96 ~~~~v~r~~~~~ 107 (353)
T 2g8s_A 96 AGTAVGYGRLSD 107 (353)
T ss_dssp EEEEEEEEEECT
T ss_pred ceeEEEEEEECC
Confidence 23566666643
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.68 E-value=1.5 Score=30.23 Aligned_cols=93 Identities=15% Similarity=0.180 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-----CeEEEEeCCCCCcceEEeccCC--Cc
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-----NSVKLWDLRSPKVPLFDMLGHE--DK 145 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~vwd~~~~~~~~~~~~~~~--~~ 145 (183)
..+.+||+.+..... ...+.........+.+ ++.+++.|+.+ ..+.+||+.+.+- ..+.... ..
T Consensus 173 ~~~~~yd~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W--~~~~~~~~~r~ 243 (302)
T 2xn4_A 173 STVECYNATTNEWTY----IAEMSTRRSGAGVGVL---NNLLYAVGGHDGPLVRKSVEVYDPTTNAW--RQVADMNMCRR 243 (302)
T ss_dssp CCEEEEETTTTEEEE----ECCCSSCCBSCEEEEE---TTEEEEECCBSSSSBCCCEEEEETTTTEE--EEECCCSSCCB
T ss_pred cEEEEEeCCCCcEEE----CCCCccccccccEEEE---CCEEEEECCCCCCcccceEEEEeCCCCCE--eeCCCCCCccc
Confidence 457888887654321 1111111111122222 56677777654 3688999987642 1111111 11
Q ss_pred EEEEEecCCcEEEEecCCC-----cEEEEEecCC
Q psy2113 146 VMCVNWSDYRYIMSGGQDN-----SVRVFKTKHQ 174 (183)
Q Consensus 146 v~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 174 (183)
-..+....+..++.|+.++ .+.+||+++.
T Consensus 244 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 244 NAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 1123333556777777654 4888888764
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=92.66 E-value=2 Score=30.78 Aligned_cols=83 Identities=17% Similarity=0.095 Sum_probs=50.3
Q ss_pred eEEEeccCCCeeEEEEccCCeEEEEeC-CCeEEEEEcCCCCCccCceeEEEe----ecCCcceEEEEEecC---CCCEEE
Q psy2113 45 LITLKGHKEAISAVQWTAVDEIITSSW-DHTLKIWDAELGGMKKGAIVKSTF----SSHKEWVQSVRWSPI---DPQLFV 116 (183)
Q Consensus 45 ~~~~~~h~~~v~~~~~~~~~~l~s~~~-d~~v~vwd~~~~~~~~~~~~~~~~----~~~~~~v~~~~~~p~---~~~~l~ 116 (183)
+..+...-..-..|+|.|++.++.... .|.|++++...+... ....+ .........++++|+ ++.+.+
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~----~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv 99 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKT----ELGEVPGVSPSGEGGLLGIALSPDYASDHMVYA 99 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE----EEEECTTCCCBTTBSEEEEEECTTHHHHCEEEE
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEe----eecccCceeecCCCCceeeEeccccccCCEEEE
Confidence 344444555678999999998777776 899999876543321 11111 123456899999993 244444
Q ss_pred EE--eCCCeEEEEeCCC
Q psy2113 117 SA--SFDNSVKLWDLRS 131 (183)
Q Consensus 117 ~~--~~dg~i~vwd~~~ 131 (183)
+- ..+..|.-|....
T Consensus 100 ~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 100 YFTSASDNRIVRMLYDE 116 (347)
T ss_dssp EEECSSSEEEEEEEBCT
T ss_pred EEecCCCCEEEEEEeCC
Confidence 32 2345666666554
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=3.1 Score=32.37 Aligned_cols=116 Identities=4% Similarity=-0.089 Sum_probs=74.4
Q ss_pred cCCCeeEEEEcc-CCeEEEEe--CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEE
Q psy2113 51 HKEAISAVQWTA-VDEIITSS--WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLW 127 (183)
Q Consensus 51 h~~~v~~~~~~~-~~~l~s~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vw 127 (183)
....-..|++.| .+.|.-.. ..+.|...++..... ..+...-.....+++++.++++..+=...+.|...
T Consensus 121 ~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-------~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~ 193 (628)
T 4a0p_A 121 DLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-------TTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESS 193 (628)
T ss_dssp SCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-------EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-------EEEECCCCCcceEEEccccCEEEEEECCCCEEEEE
Confidence 344567899986 46654443 356788787765442 12223445678999999445555555567899999
Q ss_pred eCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCC
Q psy2113 128 DLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 128 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
|+..... ..+.........+++..+..+++-...+.|...|..+++
T Consensus 194 d~dG~~~--~v~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 194 NMLGLNR--EVIADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp ETTSCSC--EEEEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred cCCCCce--EEeeccCCCceEEEEECCEEEEecCCCCEEEEEECCCCC
Confidence 9976443 233333445567777766666676678888888866554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.32 E-value=1.8 Score=29.77 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=52.5
Q ss_pred CCe-EEEEeCC-----CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-----CeEEEEeCCC
Q psy2113 63 VDE-IITSSWD-----HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-----NSVKLWDLRS 131 (183)
Q Consensus 63 ~~~-l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~vwd~~~ 131 (183)
++. ++.|+.+ ..+.+||+.+..... ...+.........+.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 159 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~ 231 (301)
T 2vpj_A 159 SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN----VTPMATKRSGAGVALL---NDHIYVVGGFDGTAHLSSVEAYNIRT 231 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEE----ECCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CCEEEEECCCCCCcccceEEEEeCCCCcEEe----CCCCCcccccceEEEE---CCEEEEEeCCCCCcccceEEEEeCCC
Confidence 344 5555543 458888887654321 1111111111122222 55677777654 4689999987
Q ss_pred CCcceE-EeccCCCcEEEEEecCCcEEEEecCC-----CcEEEEEecCC
Q psy2113 132 PKVPLF-DMLGHEDKVMCVNWSDYRYIMSGGQD-----NSVRVFKTKHQ 174 (183)
Q Consensus 132 ~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 174 (183)
.+-... ........ ..+...++..++.|+.+ ..+.+||+++.
T Consensus 232 ~~W~~~~~~p~~r~~-~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 232 DSWTTVTSMTTPRCY-VGATVLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp TEEEEECCCSSCCBS-CEEEEETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred CcEEECCCCCCcccc-eeEEEECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 653111 11111111 12223355677777665 35778887764
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.68 E-value=2 Score=29.49 Aligned_cols=104 Identities=13% Similarity=0.198 Sum_probs=50.9
Q ss_pred CCe-EEEEeCCC-----eEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-------CeEEEEeC
Q psy2113 63 VDE-IITSSWDH-----TLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-------NSVKLWDL 129 (183)
Q Consensus 63 ~~~-l~s~~~d~-----~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------g~i~vwd~ 129 (183)
++. ++.|+.++ .+.+||+.+..... ...+.........+.+ ++.+++.|+.+ ..+..||+
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~yd~ 180 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH----VAPMNTRRSSVGVGVV---GGLLYAVGGYDVASRQCLSTVECYNA 180 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEE----ECCCSSCCBSCEEEEE---TTEEEEECCEETTTTEECCCEEEEET
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEee----cCCCCCcccCceEEEE---CCEEEEEeCCCCCCCccccEEEEEeC
Confidence 344 56666543 57788877654321 1111111111122222 45666766542 35889999
Q ss_pred CCCCcceE-EeccCCCcEEEEEecCCcEEEEecCCC-----cEEEEEecCC
Q psy2113 130 RSPKVPLF-DMLGHEDKVMCVNWSDYRYIMSGGQDN-----SVRVFKTKHQ 174 (183)
Q Consensus 130 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 174 (183)
.+.+-... ........ .++....+..++.|+.++ .+.+||+++.
T Consensus 181 ~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 181 TTNEWTYIAEMSTRRSG-AGVGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp TTTEEEEECCCSSCCBS-CEEEEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred CCCcEEECCCCcccccc-ccEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 87642111 11111111 223333556777776643 5888887654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.51 E-value=2.3 Score=29.52 Aligned_cols=100 Identities=10% Similarity=0.147 Sum_probs=49.8
Q ss_pred EEEEeC------CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC-----eEEEEeCCCCCc
Q psy2113 66 IITSSW------DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN-----SVKLWDLRSPKV 134 (183)
Q Consensus 66 l~s~~~------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg-----~i~vwd~~~~~~ 134 (183)
++.|+. ...+.+||+.+..... ...+........++.+ ++.+++.|+.++ .+.+||+.+.+-
T Consensus 152 yv~GG~~~~~~~~~~~~~yd~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 152 YVIGGKGSDRKCLNKMCVYDPKKFEWKE----LAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp EEECCBCTTSCBCCCEEEEETTTTEEEE----CCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred EEEeCCCCCCcccceEEEEeCCCCeEEE----CCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 556655 2468888887654321 1111111111122222 556777776544 588899987642
Q ss_pred ceEEecc--CCCcEEEEEecCCcEEEEecCCC--------------cEEEEEecCC
Q psy2113 135 PLFDMLG--HEDKVMCVNWSDYRYIMSGGQDN--------------SVRVFKTKHQ 174 (183)
Q Consensus 135 ~~~~~~~--~~~~v~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~ 174 (183)
..+.. ....-.++....+..++.|+.++ .+.+||+++.
T Consensus 225 --~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 225 --APFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp --EEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred --EECCCCCCcccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 11111 11111223333556666666542 3677887664
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=90.90 E-value=6.6 Score=33.11 Aligned_cols=115 Identities=9% Similarity=0.037 Sum_probs=69.4
Q ss_pred cCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEe--
Q psy2113 51 HKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD-- 128 (183)
Q Consensus 51 h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd-- 128 (183)
..++|++++-- +|+|++|- ..++++|++...+... .....+. .+..+.... .+++++.|..-..+.+..
T Consensus 884 v~g~v~al~~~-~g~Lla~i-g~~l~vy~l~~~~~L~-----~~~~~~~-~i~~~~l~~-~~~~I~vgD~~~Sv~~~~y~ 954 (1158)
T 3ei3_A 884 VKGAVYSMVEF-NGKLLASI-NSTVRLYEWTTEKELR-----TECNHYN-NIMALYLKT-KGDFILVGDLMRSVLLLAYK 954 (1158)
T ss_dssp ESSCEEEEEEE-TTEEEEEE-TTEEEEEEECTTSCEE-----EEEEECC-CSCEEEEEE-ETTEEEEEESSBCEEEEEEE
T ss_pred cCCcCEEEeee-CCEEEEEc-CCEEEEEECCCCceEE-----EEeeccc-cEEEEEEec-cCCEEEEEEhhheEEEEEEE
Confidence 46778887743 35666554 5799999997654311 1111111 122222322 456888888766666554
Q ss_pred CCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCC
Q psy2113 129 LRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 129 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 174 (183)
....+........+...++++.+.+...++.+..+|.|.+......
T Consensus 955 ~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~~~ 1000 (1158)
T 3ei3_A 955 PMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKDSA 1000 (1158)
T ss_dssp TTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEECTT
T ss_pred cCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecCCC
Confidence 4333321222233556788999886678888999999999887664
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=4.9 Score=31.24 Aligned_cols=156 Identities=9% Similarity=-0.009 Sum_probs=86.2
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEcc-CCe-EEEEeCCCeEEEEEcCCCCCcc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTA-VDE-IITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~-l~s~~~d~~v~vwd~~~~~~~~ 87 (183)
..+++|.+.+..+...+.....+.....+. ......+........++++.. .+. +++-+..+.|.+.++.....
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g--~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~-- 426 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDG--SGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR-- 426 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTS--CSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCC--CccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE--
Confidence 456778876666665553222211111111 111122222334567888874 455 55666778999999875432
Q ss_pred CceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CCeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcEE-EEecCCC
Q psy2113 88 GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYI-MSGGQDN 164 (183)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~~~~~dg 164 (183)
.......-.....+++.|..+.++.+-.. .+.|...++..... .......-...+.+++++ ++.| ++-+..+
T Consensus 427 ----~~l~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~-~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~ 501 (619)
T 3s94_A 427 ----KILISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDR-VVLVNTSLGWPNGLALDYDEGKIYWGDAKTD 501 (619)
T ss_dssp ----EEEECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-EEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred ----EEEEECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCcc-EEEEeCCCCCCeeeEEcccCCEEEEEECCCC
Confidence 11222334567899999954655555432 36777777654332 223333345678888884 4444 4445566
Q ss_pred cEEEEEecCC
Q psy2113 165 SVRVFKTKHQ 174 (183)
Q Consensus 165 ~i~iwd~~~~ 174 (183)
.|...++...
T Consensus 502 ~I~~~~~dG~ 511 (619)
T 3s94_A 502 KIEVMNTDGT 511 (619)
T ss_dssp EEEEEESSSC
T ss_pred EEEEEecCCC
Confidence 7888887544
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=90.04 E-value=0.77 Score=35.33 Aligned_cols=80 Identities=18% Similarity=0.167 Sum_probs=46.4
Q ss_pred CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCc-EEEEE
Q psy2113 72 DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDK-VMCVN 150 (183)
Q Consensus 72 d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-v~~~~ 150 (183)
++.+..||+.+++. ....... .++..-.... .+.+++.++.|+.++.||.++++. +-.+...... ..-+.
T Consensus 465 ~G~l~A~D~~tG~~------~W~~~~~-~~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~-lW~~~~~~g~~a~P~~ 535 (582)
T 1flg_A 465 VGSLRAMDPVSGKV------VWEHKEH-LPLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKE-LWKFQTGSGIVSPPIT 535 (582)
T ss_dssp SEEEEEECTTTCCE------EEEEEES-SCCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEE
T ss_pred cceEEEEECCCCCE------EEEecCC-CCCcccceEe-CCCEEEEECCCCcEEEEECCCCCE-EEEecCCCCcccCceE
Confidence 57899999988774 3333222 1221111122 355777899999999999999986 5444432221 12355
Q ss_pred ec-CC-cEEEEe
Q psy2113 151 WS-DY-RYIMSG 160 (183)
Q Consensus 151 ~~-~~-~~l~~~ 160 (183)
|. ++ .++++.
T Consensus 536 y~~~G~qYv~~~ 547 (582)
T 1flg_A 536 WEQDGEQYLGVT 547 (582)
T ss_dssp EEETTEEEEEEE
T ss_pred EEECCEEEEEEE
Confidence 54 44 455443
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=89.07 E-value=4.2 Score=28.09 Aligned_cols=103 Identities=13% Similarity=0.203 Sum_probs=52.1
Q ss_pred CCe-EEEEeCC-----CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-----CeEEEEeCCC
Q psy2113 63 VDE-IITSSWD-----HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-----NSVKLWDLRS 131 (183)
Q Consensus 63 ~~~-l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~vwd~~~ 131 (183)
++. ++.|+.+ ..+.+||+.+..... ...+.........+.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 168 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~ 240 (308)
T 1zgk_A 168 NRLLYAVGGFDGTNRLNSAECYYPERNEWRM----ITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERYDVET 240 (308)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTTTEEEE----CCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCcCceEEEEeCCCCeEee----CCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEEeCCC
Confidence 344 5555543 458888887654321 1111111111222222 55677777654 4689999987
Q ss_pred CCcceEEeccCC--CcEEEEEecCCcEEEEecCC-----CcEEEEEecCC
Q psy2113 132 PKVPLFDMLGHE--DKVMCVNWSDYRYIMSGGQD-----NSVRVFKTKHQ 174 (183)
Q Consensus 132 ~~~~~~~~~~~~--~~v~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 174 (183)
.+- ..+.... ..-.++....+..++.|+.+ ..+.+||+++.
T Consensus 241 ~~W--~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 241 ETW--TFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp TEE--EECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CcE--EECCCCCCCccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 642 1111111 11122333355677777654 34778887764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=88.41 E-value=6.3 Score=29.31 Aligned_cols=110 Identities=11% Similarity=0.213 Sum_probs=59.4
Q ss_pred EEEeccCCCeeEEEEccCCeEEEEeCCC-eEEEEEcCCCCCccCceeEEEee------cCCcceEEEEEecC---CCCEE
Q psy2113 46 ITLKGHKEAISAVQWTAVDEIITSSWDH-TLKIWDAELGGMKKGAIVKSTFS------SHKEWVQSVRWSPI---DPQLF 115 (183)
Q Consensus 46 ~~~~~h~~~v~~~~~~~~~~l~s~~~d~-~v~vwd~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~p~---~~~~l 115 (183)
..+...-..-..|+|.|++.|+.+...+ .|++++..++... ....+. ........|+|+|+ ++.+.
T Consensus 20 ~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~----~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY 95 (454)
T 1cru_A 20 KVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVK----TVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY 95 (454)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE----EEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred EEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEe----EEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence 3333334456799999999988777775 6888875443321 111121 12456789999994 44444
Q ss_pred EEEeC------------CCeEEEEeCCCCC------cceE-Eec-cCCCcEEEEEecCC-cEEEE
Q psy2113 116 VSASF------------DNSVKLWDLRSPK------VPLF-DML-GHEDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 116 ~~~~~------------dg~i~vwd~~~~~------~~~~-~~~-~~~~~v~~~~~~~~-~~l~~ 159 (183)
++-+. ...|.-++..... ..+. .+. ........|+|.++ .+.++
T Consensus 96 v~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~ 160 (454)
T 1cru_A 96 ISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYT 160 (454)
T ss_dssp EEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEE
T ss_pred EEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEE
Confidence 44432 2345555543321 1011 122 11235688999966 44444
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=88.26 E-value=5.6 Score=28.60 Aligned_cols=99 Identities=16% Similarity=0.272 Sum_probs=60.3
Q ss_pred eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCC----C---EEEEEe-C--CCeEEEEeCCCCCc
Q psy2113 65 EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDP----Q---LFVSAS-F--DNSVKLWDLRSPKV 134 (183)
Q Consensus 65 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~----~---~l~~~~-~--dg~i~vwd~~~~~~ 134 (183)
.++.....+-+.+||+ .++. +..+.. +.++.+..-| +- . ++++.. . ++.|.+|++.....
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~------l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~ 111 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKM------LHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNG 111 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCE------EEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTC
T ss_pred EEEEEcCCCCEEEEcC-CCcE------EEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCC
Confidence 3666677889999999 4443 444432 5677777766 32 1 233333 3 57899997642221
Q ss_pred ceEEecc------CC-CcEEEEEe--cC--C-cEEEEecCCCcEEEEEecC
Q psy2113 135 PLFDMLG------HE-DKVMCVNW--SD--Y-RYIMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 135 ~~~~~~~------~~-~~v~~~~~--~~--~-~~l~~~~~dg~i~iwd~~~ 173 (183)
++..... .. ..+..+++ ++ + .++++...+|.+..|++..
T Consensus 112 ~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 112 TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 2433321 11 45666776 54 2 3688888899999999854
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=88.02 E-value=3.9 Score=28.26 Aligned_cols=104 Identities=14% Similarity=0.129 Sum_probs=51.0
Q ss_pred CCe-EEEEeCC-----CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-----CeEEEEeCCC
Q psy2113 63 VDE-IITSSWD-----HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-----NSVKLWDLRS 131 (183)
Q Consensus 63 ~~~-l~s~~~d-----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~vwd~~~ 131 (183)
++. ++.|+.+ ..+.+||+.+...... ..+.........+.+ ++.+++.|+.+ ..+..||+.+
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~ 193 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV----APMLTRRIGVGVAVL---NRLLYAVGGFDGTNRLNSAECYYPER 193 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEEC----CCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeEC----CCCCccccceEEEEE---CCEEEEEeCCCCCCcCceEEEEeCCC
Confidence 344 4555433 4678888876543211 111111111122222 45677777654 4588899877
Q ss_pred CCcc-eEEeccCCCcEEEEEecCCcEEEEecCC-----CcEEEEEecCC
Q psy2113 132 PKVP-LFDMLGHEDKVMCVNWSDYRYIMSGGQD-----NSVRVFKTKHQ 174 (183)
Q Consensus 132 ~~~~-~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 174 (183)
.+-. +......... .++....+..++.|+.+ ..+.+||+.+.
T Consensus 194 ~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 194 NEWRMITAMNTIRSG-AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp TEEEECCCCSSCCBS-CEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CeEeeCCCCCCcccc-ceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 5420 1011111111 12223355667777664 45888887764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.64 E-value=5.2 Score=27.48 Aligned_cols=103 Identities=10% Similarity=0.073 Sum_probs=51.7
Q ss_pred CCe-EEEEeCC----CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC------CeEEEEeCCC
Q psy2113 63 VDE-IITSSWD----HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD------NSVKLWDLRS 131 (183)
Q Consensus 63 ~~~-l~s~~~d----~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d------g~i~vwd~~~ 131 (183)
++. ++.|+.+ ..+.+||..+..... ...+.........+.+ ++.+++.|+.+ ..+.+||+.+
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~ 127 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYS----KLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRT 127 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEE----EECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTT
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEE----CCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCC
Confidence 344 5666644 678888987765321 1111111111122222 55677777655 4688999987
Q ss_pred CCcceEEeccCC--CcEEEEEecCCcEEEEecC---------CCcEEEEEecCC
Q psy2113 132 PKVPLFDMLGHE--DKVMCVNWSDYRYIMSGGQ---------DNSVRVFKTKHQ 174 (183)
Q Consensus 132 ~~~~~~~~~~~~--~~v~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~ 174 (183)
.+- ....... ..-.++....+..++.|+. -..+.+||+.+.
T Consensus 128 ~~W--~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~ 179 (306)
T 3ii7_A 128 ESW--HTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATE 179 (306)
T ss_dssp TEE--EEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTT
T ss_pred Cce--EeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCC
Confidence 642 1111111 1111222335556666654 234778887665
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.42 E-value=4.4 Score=28.04 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=46.1
Q ss_pred CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-C-----CeEEEEeCCCCCcceEEeccCC--C
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-D-----NSVKLWDLRSPKVPLFDMLGHE--D 144 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-d-----g~i~vwd~~~~~~~~~~~~~~~--~ 144 (183)
..+.+||..+..... ...+...... .++.. - ++.+++.|+. + ..+.+||+.+.+- ....... .
T Consensus 117 ~~~~~~d~~~~~W~~----~~~~p~~r~~-~~~~~-~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r 187 (315)
T 4asc_A 117 DSVMCYDRLSFKWGE----SDPLPYVVYG-HTVLS-H-MDLVYVIGGKGSDRKCLNKMCVYDPKKFEW--KELAPMQTAR 187 (315)
T ss_dssp CCEEEEETTTTEEEE----CCCCSSCCBS-CEEEE-E-TTEEEEECCBCTTSCBCCCEEEEETTTTEE--EECCCCSSCC
T ss_pred ceEEEECCCCCcEeE----CCCCCCcccc-eeEEE-E-CCEEEEEeCCCCCCcccceEEEEeCCCCeE--EECCCCCCch
Confidence 458888887654321 1111111111 22222 2 5567777765 2 4688999987642 1111111 1
Q ss_pred cEEEEEecCCcEEEEecCCC-----cEEEEEecCC
Q psy2113 145 KVMCVNWSDYRYIMSGGQDN-----SVRVFKTKHQ 174 (183)
Q Consensus 145 ~v~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~ 174 (183)
.-.++....+..++.|+.++ .+.+||+.+.
T Consensus 188 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 188 SLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp BSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred hceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence 11222233556666776554 4778887664
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.05 E-value=5.6 Score=27.29 Aligned_cols=101 Identities=9% Similarity=0.120 Sum_probs=51.2
Q ss_pred EEEEeC--CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC----CeEEEEeCCCCCcc-eEE
Q psy2113 66 IITSSW--DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD----NSVKLWDLRSPKVP-LFD 138 (183)
Q Consensus 66 l~s~~~--d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d----g~i~vwd~~~~~~~-~~~ 138 (183)
++.|+. ...+.+||..+.+... ...+.........+.+ ++.+++.|+.+ ..+.+||+.+.+-. +..
T Consensus 15 ~~~GG~~~~~~~~~~d~~~~~W~~----~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 15 IALFGGSQPQSCRYFNPKDYSWTD----IRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEECCSSTTSEEEEETTTTEEEE----CCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred EEEeCCCCCceEEEecCCCCCEec----CCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 444543 3678889987755321 1111111111222222 55677777754 57889999876521 111
Q ss_pred eccCCCcEEEEEecCCcEEEEecCC------CcEEEEEecCC
Q psy2113 139 MLGHEDKVMCVNWSDYRYIMSGGQD------NSVRVFKTKHQ 174 (183)
Q Consensus 139 ~~~~~~~v~~~~~~~~~~l~~~~~d------g~i~iwd~~~~ 174 (183)
+...... ..+....+..++.|+.+ ..+.+||+.+.
T Consensus 88 ~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~ 128 (306)
T 3ii7_A 88 PPTPRDS-LAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE 128 (306)
T ss_dssp CSSCCBS-CEEEEETTEEEEECCBBTTBSCCCCEEEEETTTT
T ss_pred CCccccc-eeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCC
Confidence 1111111 12222355666777665 35888887764
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=87.01 E-value=5.9 Score=27.44 Aligned_cols=94 Identities=12% Similarity=0.220 Sum_probs=45.8
Q ss_pred CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-----CeEEEEeCCCCCcc-eEEeccCCCcE
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-----NSVKLWDLRSPKVP-LFDMLGHEDKV 146 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~vwd~~~~~~~-~~~~~~~~~~v 146 (183)
..+.+||+.+..... ...+.........+.+ ++.+++.|+.+ ..+.+||+.+.+-. +.........
T Consensus 175 ~~~~~yd~~~~~W~~----~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~- 246 (318)
T 2woz_A 175 NRVFIYNPKKGDWKD----LAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSS- 246 (318)
T ss_dssp CCEEEEETTTTEEEE----ECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBS-
T ss_pred ceEEEEcCCCCEEEE----CCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccc-
Confidence 458888887654321 1111111111122222 45677777643 35778999876521 1111111111
Q ss_pred EEEEecCCcEEEEecCC--------------CcEEEEEecCC
Q psy2113 147 MCVNWSDYRYIMSGGQD--------------NSVRVFKTKHQ 174 (183)
Q Consensus 147 ~~~~~~~~~~l~~~~~d--------------g~i~iwd~~~~ 174 (183)
.++....+..++.|+.+ ..+.+||+++.
T Consensus 247 ~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 247 ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp CEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred eEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 22333355666776654 35778887764
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=86.74 E-value=6.8 Score=27.94 Aligned_cols=143 Identities=8% Similarity=0.058 Sum_probs=69.4
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCc-cceEEEe---ccCCCeeEEEEccC----CeEEEEeC----C----C
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQK-TPLITLK---GHKEAISAVQWTAV----DEIITSSW----D----H 73 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~h~~~v~~~~~~~~----~~l~s~~~----d----~ 73 (183)
..+++|.|+|.++.+.. . -.+..+ + ... +.+..+. ........|+++|+ +.|..+.. + .
T Consensus 31 P~~ia~~pdG~l~V~e~-~-g~I~~~--d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 31 PWSIAPLGGGRYLVTER-P-GRLVLI--S-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp EEEEEEEETTEEEEEET-T-TEEEEE--C-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CeEEEEcCCCeEEEEeC-C-CEEEEE--e-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45789999998666532 1 111111 0 111 2222221 12346789999986 56544332 3 5
Q ss_pred eEEEEEcCCCC--CccCceeEEEeec-CCcceEEEEEecCCCCEEEEEeC-------------CCeEEEEeCCCCC----
Q psy2113 74 TLKIWDAELGG--MKKGAIVKSTFSS-HKEWVQSVRWSPIDPQLFVSASF-------------DNSVKLWDLRSPK---- 133 (183)
Q Consensus 74 ~v~vwd~~~~~--~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~-------------dg~i~vwd~~~~~---- 133 (183)
.|..|+..... ......+...+.. .......+.|.| ++.++++.+. .|.|.-++....-
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~p-DG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n 184 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGP-DGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN 184 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECT-TSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECC-CCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence 67777765431 1111111111221 111246799999 7777776432 2566666654320
Q ss_pred ---cceEEeccCCCcEEEEEecC-CcEEEE
Q psy2113 134 ---VPLFDMLGHEDKVMCVNWSD-YRYIMS 159 (183)
Q Consensus 134 ---~~~~~~~~~~~~v~~~~~~~-~~~l~~ 159 (183)
.......++. ....++|++ +..|.+
T Consensus 185 pf~~~~i~a~G~r-np~Gla~d~~~g~l~v 213 (354)
T 3a9g_A 185 PFPNSPIWSYGHR-NPQGIDWHRASGVMVA 213 (354)
T ss_dssp SSTTCCEEEECCS-CCCEEEECTTTCCEEE
T ss_pred CCCCCcEEEEccC-CcceEEEeCCCCCEEE
Confidence 0011222333 346788987 444443
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=85.09 E-value=13 Score=29.48 Aligned_cols=112 Identities=10% Similarity=0.107 Sum_probs=61.3
Q ss_pred CCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeec----CCcceEEEEEecCCCCEEEEEeCCCeEEEEe
Q psy2113 53 EAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSS----HKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128 (183)
Q Consensus 53 ~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd 128 (183)
..|.++...+++.|..++.. -+..++..+..... . .... ....|.++...+ ++..|-.|.. +-+..+|
T Consensus 146 ~~i~~i~~d~~g~lWigt~~-Gl~~~~~~~~~~~~----~-~~~~~~~~~~~~i~~i~~d~-~~~~lWigt~-~Gl~~~~ 217 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYVGTYN-GLCRYIPSNGKFEG----I-PLPVHSSQSNLFVNSLLEDT-TRQCVWIGTE-GYLFQYF 217 (758)
T ss_dssp SCEEEEEECTTCCEEEEETT-EEEEEETTTTEEEE----E-CCCCCTTCSSCCEEEEEEET-TTTEEEEEEE-EEEEEEE
T ss_pred CeEEEEEEcCCCCEEEEeCC-CHhhCccCCCceEE----e-cCCCccccccceeEEEEEEC-CCCEEEEEEC-CCCeEEc
Confidence 35677776667777666654 46677765543210 0 0011 123478887776 4554334443 4577888
Q ss_pred CCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCC
Q psy2113 129 LRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 129 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 174 (183)
..+.+. ..........|.++.-.++..|..|+.+ -+.+++..+.
T Consensus 218 ~~~~~~-~~~~~l~~~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 218 PSTGQI-KQTEAFHNNSIKSLALDGNGDLLAGTDN-GLYVYHNDTT 261 (758)
T ss_dssp TTTTEE-EEEEEEEEEEEEEEEECTTCCEEEEETT-EEEEECCTTS
T ss_pred CCCCeE-EeccCCCCCeEEEEEEcCCCCEEEEeCC-ceeEEecCCC
Confidence 876542 1111112335777776655556566644 4777776553
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.09 E-value=9.3 Score=27.15 Aligned_cols=31 Identities=3% Similarity=-0.092 Sum_probs=20.5
Q ss_pred CcEEEEEecCCcEEEEecCCCcEEEEEecCC
Q psy2113 144 DKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 144 ~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 174 (183)
.....++|..+..+++....+.|...++...
T Consensus 268 ~ap~G~~~~~G~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 268 FPPGNLAFFRGDLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp CCEEEEEEETTEEEEEETTTTEEEEEEEEEE
T ss_pred CCCcceEEECCEEEEEECCCCEEEEEEECCC
Confidence 3456777766666666666677777776643
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.76 E-value=8.3 Score=26.32 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=52.5
Q ss_pred CCe-EEEEeCC-----CeEEEEEcCCCC---CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-----CeEEEEe
Q psy2113 63 VDE-IITSSWD-----HTLKIWDAELGG---MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-----NSVKLWD 128 (183)
Q Consensus 63 ~~~-l~s~~~d-----~~v~vwd~~~~~---~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-----g~i~vwd 128 (183)
++. ++.|+.+ ..+.+||..+.. ... ...+.........+.. ++.+++.|+.+ ..+.+||
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~----~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d 134 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYS----VAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYD 134 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEE----ECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEE----CCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEc
Confidence 344 5666654 468899988765 321 1111111111222222 45677777643 3688999
Q ss_pred CCCCCcc-eEEeccCCCcEEEEEecCCcEEEEecCC-----CcEEEEEecCC
Q psy2113 129 LRSPKVP-LFDMLGHEDKVMCVNWSDYRYIMSGGQD-----NSVRVFKTKHQ 174 (183)
Q Consensus 129 ~~~~~~~-~~~~~~~~~~v~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 174 (183)
+.+.+-. +......... .++...++..++.|+.+ ..+.+||+.+.
T Consensus 135 ~~~~~W~~~~~~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~ 185 (301)
T 2vpj_A 135 PNIDQWSMLGDMQTAREG-AGLVVASGVIYCLGGYDGLNILNSVEKYDPHTG 185 (301)
T ss_dssp TTTTEEEEEEECSSCCBS-CEEEEETTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred CCCCeEEECCCCCCCccc-ceEEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 8876521 1111111111 22222355666666654 35788887654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=83.41 E-value=9 Score=26.48 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=32.9
Q ss_pred CCCEEEEEeC------CCeEEEEeCCCCCcceEEecc--CCCcEEEEEecCCcEEEEecCC-----CcEEEEEecCC
Q psy2113 111 DPQLFVSASF------DNSVKLWDLRSPKVPLFDMLG--HEDKVMCVNWSDYRYIMSGGQD-----NSVRVFKTKHQ 174 (183)
Q Consensus 111 ~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~ 174 (183)
++.+++.|+. -..+.+||+.+.+- ..... ....-.++....+..++.|+.+ ..+.+||+.+.
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W--~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDW--KDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEE--EECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 5667777653 23588999987642 11111 1111122233355666666543 24677887665
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=82.46 E-value=11 Score=26.84 Aligned_cols=116 Identities=7% Similarity=0.039 Sum_probs=68.2
Q ss_pred EEeccCCCeeEEEEcc-CCeEEEEe-CCCeEEEEEcCCCCCccCceeEEEeec----C--CcceEEEEE---ecCCCCEE
Q psy2113 47 TLKGHKEAISAVQWTA-VDEIITSS-WDHTLKIWDAELGGMKKGAIVKSTFSS----H--KEWVQSVRW---SPIDPQLF 115 (183)
Q Consensus 47 ~~~~h~~~v~~~~~~~-~~~l~s~~-~d~~v~vwd~~~~~~~~~~~~~~~~~~----~--~~~v~~~~~---~p~~~~~l 115 (183)
.+....-.-.+++|.+ .+.|..++ ..++|..||...+.... . .+.+ . ...+..+.+ .| +++++
T Consensus 7 ~~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~----~-~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~ 80 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN----V-VIDGASSNGDGEQQMSGLSLLTHDN-SKRLF 80 (334)
T ss_dssp EECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE----E-CCTTTCCSSCCSEEEEEEEESSSSS-CCEEE
T ss_pred EecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE----E-ecCCccccCCCcceeeEEEEeccCC-CCcEE
Confidence 3444444556889985 57766666 68999999986443211 1 1211 1 124688999 68 67777
Q ss_pred EEEe-------------CCCeEEEEeCC---CCCcceE-Eecc-----------CCCcEEEEEecCC-cEEEEecCC-Cc
Q psy2113 116 VSAS-------------FDNSVKLWDLR---SPKVPLF-DMLG-----------HEDKVMCVNWSDY-RYIMSGGQD-NS 165 (183)
Q Consensus 116 ~~~~-------------~dg~i~vwd~~---~~~~~~~-~~~~-----------~~~~v~~~~~~~~-~~l~~~~~d-g~ 165 (183)
++.. .+..+..+|+. +++.... .+.. -......++..++ +..++++.. +.
T Consensus 81 vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~ 160 (334)
T 2p9w_A 81 AVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPA 160 (334)
T ss_dssp EEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCE
T ss_pred EEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCe
Confidence 7543 26789999998 6664211 1211 1124778888854 555555555 44
Q ss_pred EEE
Q psy2113 166 VRV 168 (183)
Q Consensus 166 i~i 168 (183)
|..
T Consensus 161 I~r 163 (334)
T 2p9w_A 161 IAR 163 (334)
T ss_dssp EEE
T ss_pred EEE
Confidence 333
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=81.17 E-value=19 Score=28.54 Aligned_cols=119 Identities=8% Similarity=0.034 Sum_probs=65.0
Q ss_pred CCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeE--EEee---c-CCcceEEEEEecCCCCEEEEEeCCCeEEE
Q psy2113 53 EAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVK--STFS---S-HKEWVQSVRWSPIDPQLFVSASFDNSVKL 126 (183)
Q Consensus 53 ~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~--~~~~---~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~v 126 (183)
..|.++.-.+++.|..|+..+-+.++|............. ..+. + ....|.++...+ ++++.+.++..+-+..
T Consensus 419 ~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~Gl~~ 497 (758)
T 3ott_A 419 NWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNKGIDK 497 (758)
T ss_dssp SSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCSSEEE
T ss_pred ceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCCCcEE
Confidence 3567777667788888887777788885421000000000 1111 1 123588888887 6777763333445777
Q ss_pred EeCCCCCcceEEecc----CCCcEEEEEecCCcEEEEecCCCcEEEEEecCCC
Q psy2113 127 WDLRSPKVPLFDMLG----HEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 127 wd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+|..+.+. ..+.. ....+.++....+..|..|+.+| |..+|..+..
T Consensus 498 ~d~~~~~~--~~~~~~~~~~~~~~~~i~~d~~g~lWigt~~G-l~~~~~~~~~ 547 (758)
T 3ott_A 498 INPRTREV--TKLFADELTGEKSPNYLLCDEDGLLWVGFHGG-VMRINPKDES 547 (758)
T ss_dssp EETTTTEE--EEECTTTSCGGGCEEEEEECTTSCEEEEETTE-EEEECC--CC
T ss_pred EeCCCCce--EEecCCCcCCCcccceEEECCCCCEEEEecCc-eEEEecCCCc
Confidence 88876542 22221 12356777766555555556554 7778876554
|
| >4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B | Back alignment and structure |
|---|
Probab=81.00 E-value=22 Score=29.30 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=27.8
Q ss_pred ceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCc
Q psy2113 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV 134 (183)
Q Consensus 101 ~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~ 134 (183)
.+.++...+ +..++++-+.|+++|+|++.++++
T Consensus 237 ~~~~~~~~~-~~~~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEET-TTTEEEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeecC-CCcEEEEEECCCEEEEEECCCCCe
Confidence 466777777 677999999999999999998875
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=81.00 E-value=15 Score=27.53 Aligned_cols=164 Identities=9% Similarity=0.051 Sum_probs=94.8
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCC---cccccccCccceEEEeccCCCeeEEEEccC----CeEEEEeC---CCeEEEE
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLP---SFFQLILQKTPLITLKGHKEAISAVQWTAV----DEIITSSW---DHTLKIW 78 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~~l~s~~~---d~~v~vw 78 (183)
...+..-+++..+++..++..-.-. .........+..+.+++|......+....+ ..+.-+.. .++++|-
T Consensus 152 QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~ 231 (494)
T 1bpo_A 152 QIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHII 231 (494)
T ss_dssp EEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEE
T ss_pred eEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccchheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEE
Confidence 3445555666666665443211100 000012234455778888877766665421 12333333 2789999
Q ss_pred EcCCCC-C--ccCceeEEEee---cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec
Q psy2113 79 DAELGG-M--KKGAIVKSTFS---SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152 (183)
Q Consensus 79 d~~~~~-~--~~~~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 152 (183)
++.... . .-.......+. .......++..++ ....+..-..-|.+++||++++.+ +..-+-..++|..-+..
T Consensus 232 Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~-kygviyviTK~G~i~lyDleTgt~-i~~nrIs~~~iF~t~~~ 309 (494)
T 1bpo_A 232 EVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAPH 309 (494)
T ss_dssp ECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-TTTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEE
T ss_pred EcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-cCCEEEEEecCceEEEEeccccee-eeeecccCCceEEeccc
Confidence 986531 1 11111111111 1244567888888 566788888899999999999987 66666666777666555
Q ss_pred -CCcEEEEecCCCcEEEEEecCC
Q psy2113 153 -DYRYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 153 -~~~~l~~~~~dg~i~iwd~~~~ 174 (183)
+..-++.....|.|.--.+...
T Consensus 310 ~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 310 EATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp TTTTEEEEEETTCEEEEEEECTT
T ss_pred CCCCcEEEEccCceEEEEEEccc
Confidence 3466777778888876665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 183 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-17 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-10 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-06 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 9e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-16 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 1e-09 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 3e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-09 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-13 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-12 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 4e-10 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-07 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 5e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-10 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-09 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 5e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-10 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-07 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 1e-06 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 4e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 4e-10 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-07 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 1e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 7e-10 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 2e-09 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 1e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-10 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 0.002 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-09 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 9e-07 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 1e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-06 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 2e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 3e-07 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.002 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 2e-08 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 1e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 4e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-07 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 6e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.002 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-07 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 5e-05 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 8e-07 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 7e-06 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 6e-04 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 6e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 4e-04 | |
| d2bbkh_ | 355 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 6e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 0.001 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 0.004 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 75.2 bits (183), Expect = 5e-17
Identities = 24/131 (18%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 41 QKTPLITLKGHKEAISAVQWTAV-DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK 99
+ T GH+ I+A+ + + T S D T +++D ++ + +
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFD----LRADQELMTYSHDNII 270
Query: 100 EWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIM 158
+ SV +S +L ++ D + +WD + GH+++V C+ + D +
Sbjct: 271 CGITSVSFSK-SGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDDGMAVA 328
Query: 159 SGGQDNSVRVF 169
+G D+ ++++
Sbjct: 329 TGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.3 bits (134), Expect = 2e-10
Identities = 19/108 (17%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 67 ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKL 126
++ + D + K+WD G ++ TF+ H+ + ++ + P + F + S D + +L
Sbjct: 200 VSGACDASAKLWDVREGMCRQ------TFTGHESDINAICFFP-NGNAFATGSDDATCRL 252
Query: 127 -WDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
++ + + V++S R +++G D + V+
Sbjct: 253 FDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.5 bits (132), Expect = 4e-10
Identities = 13/79 (16%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 51 HKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP 109
I++V ++ ++ D +WDA + H V + +
Sbjct: 269 IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG------VLAGHDNRVSCLGVTD 322
Query: 110 IDPQLFVSASFDNSVKLWD 128
D + S+D+ +K+W+
Sbjct: 323 -DGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.7 bits (104), Expect = 2e-06
Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 2/79 (2%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRY 156
D +LFVS + D S KLWD+R GHE + + + +
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNA 240
Query: 157 IMSGGQDNSVRVFKTKHQP 175
+G D + R+F +
Sbjct: 241 FATGSDDATCRLFDLRADQ 259
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.7 bits (91), Expect = 9e-05
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 39 ILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79
L+ L GH +S + T + T SWD LKIW+
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.8 bits (86), Expect = 3e-04
Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN 150
+ T H + ++ W D +L VSAS D + +WD + + + VM
Sbjct: 47 TRRTLRGHLAKIYAMHWGT-DSRLLVSASQDGKLIIWDSYTTN-KVHAIPLRSSWVMTCA 104
Query: 151 WS 152
++
Sbjct: 105 YA 106
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 36.3 bits (82), Expect = 0.001
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
TL+GH I A+ W ++++S D L IWD+ WV +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH------AIPLRSSWVMTC 103
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
++P DN +++L++ + + ++ +
Sbjct: 104 AYAP-SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN 155
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 74.4 bits (181), Expect = 1e-16
Identities = 37/161 (22%), Positives = 73/161 (45%), Gaps = 16/161 (9%)
Query: 26 NIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84
+ V + F + + + GHK+++ +V +T + +++ S D ++K+W+ +
Sbjct: 228 AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 287
Query: 85 MKK------GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFD 138
K + T+ HK++V SV + + + +S S D V WD +S PL
Sbjct: 288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGN-PLLM 345
Query: 139 MLGHEDKVMCVNWS-------DYRYIMSGGQDNSVRVFKTK 172
+ GH + V+ V + +Y +G D R++K K
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.0 bits (128), Expect = 1e-09
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 24 LTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82
L N++ + S + T +T GHK+ + +V T DE I++ S D + WD +
Sbjct: 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339
Query: 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPI-----DPQLFVSASFDNSVKLWDLR 130
G H+ V SV + + +F + S D ++W +
Sbjct: 340 GNPLL------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.7 bits (109), Expect = 4e-07
Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 13/142 (9%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAE------------LGGMKKGAIVK 92
L H + V+++ E + + + T +++ +
Sbjct: 55 LHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNT 114
Query: 93 STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152
S+ S +++SV +SP D + + + D +++WD+ + K+ + +D +
Sbjct: 115 SSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173
Query: 153 DYRYIMSGGQDNSVRVFKTKHQ 174
++SG D +VR++ +
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTG 195
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 72.5 bits (176), Expect = 3e-16
Identities = 24/106 (22%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+++ S D T+K+WD G T H WV+ V + + +S + D +++
Sbjct: 220 LLSGSRDKTIKMWDVSTGMCLM------TLVGHDNWVRGVLFHS-GGKFILSCADDKTLR 272
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFK 170
+WD ++ + + + HE V +++ Y+++G D +V+V++
Sbjct: 273 VWDYKNKR-CMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.4 bits (124), Expect = 4e-09
Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 28/151 (18%)
Query: 43 TPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
+ T GH+E + V+ I + S D T+++W K+ H+
Sbjct: 134 YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVA------TKECKAELREHRHV 187
Query: 102 VQSVRW-------------------SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGH 142
V+ + W S +S S D ++K+WD+ + L ++GH
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGH 246
Query: 143 EDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
++ V V + ++I+S D ++RV+ K
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYK 277
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.7 bits (122), Expect = 7e-09
Identities = 36/174 (20%), Positives = 65/174 (37%), Gaps = 50/174 (28%)
Query: 39 ILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSS 97
I + L GH+ ++ V + V ++++S D T+K+WD E G ++ T
Sbjct: 4 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER------TLKG 57
Query: 98 HKEWVQSVRWSPI-----------------------------------------DPQLFV 116
H + VQ + + + V
Sbjct: 58 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 117
Query: 117 SASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVF 169
SAS D ++K+W++++ + GH + V V + D I S D +VRV+
Sbjct: 118 SASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW 170
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.8 bits (86), Expect = 4e-04
Identities = 10/39 (25%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79
K + TL H+ ++++ + ++T S D T+K+W+
Sbjct: 279 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.3 bits (152), Expect = 8e-13
Identities = 21/144 (14%), Positives = 46/144 (31%), Gaps = 22/144 (15%)
Query: 47 TLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGA------IVKSTFSSHKE 100
K H I +V ++ S D LK+WD +L + V + H +
Sbjct: 9 AGKAHDADIFSVSACN-SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP---------KVPLFDMLGHEDKVMCVNW 151
+Q++ + L + SF + + + K+ L D + + W
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127
Query: 152 S------DYRYIMSGGQDNSVRVF 169
+++ + ++
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIW 151
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 6e-06
Identities = 17/177 (9%), Positives = 49/177 (27%), Gaps = 27/177 (15%)
Query: 26 NIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELG 83
+ ++ + + H + + A++ A + + T+S+ L +
Sbjct: 40 DNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITRE 99
Query: 84 GMKKGAIVKS----TFSSHKEWVQSVRWSP----IDPQLFVSASFDNSVKLWDLRSPK-- 133
K I + K +++W + V+ + +W
Sbjct: 100 DETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADE 159
Query: 134 ---------------VPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175
+ + V+ S+ I +G + +V++ +
Sbjct: 160 SNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLR 216
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 1e-04
Identities = 13/96 (13%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 71 WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130
++ L + +H WV S+ ++ SA +D ++ WD++
Sbjct: 261 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET-LCSAGWDGKLRFWDVK 319
Query: 131 SPKVPLFDMLGHEDKVMCVNWS-----DYRYIMSGG 161
+ + + + H D + + G
Sbjct: 320 TKE-RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG 354
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 5e-12
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRY 156
H+ V S++++ + FVS DN + W V+ + S D +Y
Sbjct: 264 HESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGA--SIFQSKESSSVLSCDISVDDKY 320
Query: 157 IMSGGQDNSVRVFK 170
I++G D V++
Sbjct: 321 IVTGSGDKKATVYE 334
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 6e-09
Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 9/80 (11%)
Query: 51 HKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP 109
H+ + ++++ + +++ D+ L W GA + + V S S
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWR-----TPYGASIFQS--KESSSVLSCDISV 316
Query: 110 IDPQLFVSASFDNSVKLWDL 129
D + V+ S D ++++
Sbjct: 317 -DDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 2e-07
Identities = 18/114 (15%), Positives = 39/114 (34%), Gaps = 2/114 (1%)
Query: 45 LITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
I H E + AV + + + +K+WD G K + + + +++S
Sbjct: 44 QINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSP-VSQLDCLNRDNYIRS 102
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
+ P D + +++ +WDL +P + L +
Sbjct: 103 CKLLP-DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKV 155
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 56.4 bits (134), Expect = 2e-10
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 93 STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML-GHEDKVMCVNW 151
+ S E + W+ D ++ V +++ K L H +V V+W
Sbjct: 1 AYHSFLVEPISCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDW 59
Query: 152 S-DYRYIMSGGQDNSVRVFKTKHQP 175
+ D I++ G D + V+ K +
Sbjct: 60 APDSNRIVTCGTDRNAYVWTLKGRT 84
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 55.2 bits (131), Expect = 4e-10
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 6/109 (5%)
Query: 51 HKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP 109
E IS W I +H + I++ + H V V W+P
Sbjct: 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ----VHELKEHNGQVTGVDWAP 61
Query: 110 IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
D V+ D + +W L+ ++ ++
Sbjct: 62 -DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKK 109
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 46.0 bits (107), Expect = 7e-07
Identities = 15/101 (14%), Positives = 28/101 (27%), Gaps = 9/101 (8%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
++ G + + + D + A S HK
Sbjct: 274 AAGKLSFGGRLDVPKQSSQR------GLTARERFQNLDKKASSEGSAAAGAGLDSLHKNS 327
Query: 102 VQSVRWSP---IDPQLFVSASFDNSVKLWDLRSPKVPLFDM 139
V + F + D + +WD+RS + L D+
Sbjct: 328 VSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALKDL 368
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.5 bits (85), Expect = 5e-04
Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 10/137 (7%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK 99
+ + LK H ++ V W I+T D +W + K ++ + +
Sbjct: 40 KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
Query: 100 EWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN----WSDYR 155
+ + F S + + + V +
Sbjct: 100 CV-----RWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV 154
Query: 156 YIMSGGQDNSVRVFKTK 172
+ +G D R+F
Sbjct: 155 LLAAGSCDFKCRIFSAY 171
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.4 bits (134), Expect = 2e-10
Identities = 12/62 (19%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR--SPKVPLFDMLGHEDKVMCVNW 151
+ K+++ ++ P L + S+D S+ ++ + V L L ++ ++C N+
Sbjct: 6 IEQAPKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNF 64
Query: 152 SD 153
D
Sbjct: 65 ID 66
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.1 bits (128), Expect = 1e-09
Identities = 11/113 (9%), Positives = 31/113 (27%), Gaps = 4/113 (3%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
+ K+ IS ++ ++ +SWD +L ++ ++ +K +
Sbjct: 6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV---DLLQSLRYKHPLLCC 62
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
+ + + DL + +C +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKL 115
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.1 bits (115), Expect = 5e-08
Identities = 18/117 (15%), Positives = 42/117 (35%), Gaps = 2/117 (1%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+ +D +++ + + ++ V S+ +SP + +A D +
Sbjct: 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIIS 276
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPKSGQKSK 182
W+L++ K +ED V+ + SD + D++ + Q S
Sbjct: 277 CWNLQTRKKIKNFAKFNEDSVVKIACSD-NILCLATSDDTFKTNAAIDQTIELNASS 332
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.7 bits (132), Expect = 3e-10
Identities = 13/73 (17%), Positives = 31/73 (42%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYI 157
K + I+ L + S D ++ ++ ++ P + + H+D V + W +
Sbjct: 213 WKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTL 272
Query: 158 MSGGQDNSVRVFK 170
+S G D ++ +
Sbjct: 273 VSSGADACIKRWN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 1e-07
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 67 ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKL 126
T S D + I+ +K+ + ++HK+ V ++ W P VS+ D +K
Sbjct: 231 ATGSLDTNIFIYS-----VKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKR 283
Query: 127 WD 128
W+
Sbjct: 284 WN 285
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.5 bits (108), Expect = 4e-07
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 14/118 (11%)
Query: 41 QKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKE 100
L T+ GH + I+A+ + +I+ S+D + W S H
Sbjct: 2 HDEVLKTISGHNKGITALTV---NPLISGSYDGRIMEWS-----------SSSMHQDHSN 47
Query: 101 WVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
+ S+ S +S V + D V +D ++
Sbjct: 48 LIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLI 105
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.0 bits (104), Expect = 1e-06
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD 153
T S H + + ++ +P+ +S S+D + W S H + ++ ++ S
Sbjct: 8 TISGHNKGITALTVNPL-----ISGSYDGRIMEWSSSSMHQ------DHSNLIVSLDNSK 56
Query: 154 YRYIMSG 160
+ S
Sbjct: 57 AQEYSSI 63
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 4e-05
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWD 79
+ L HK+ ++ + W +++S D +K W+
Sbjct: 248 MKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 285
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 55.4 bits (131), Expect = 4e-10
Identities = 10/79 (12%), Positives = 28/79 (35%), Gaps = 1/79 (1%)
Query: 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN 150
+ H + + ++ S D + SA + + WD+ + H + +
Sbjct: 4 IDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62
Query: 151 WSDYRYIMSGGQDNSVRVF 169
+ + + D+ ++V
Sbjct: 63 TTSKGDLFTVSWDDHLKVV 81
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.4 bits (105), Expect = 9e-07
Identities = 14/113 (12%), Positives = 39/113 (34%), Gaps = 8/113 (7%)
Query: 47 TLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
GH +AI+A+ +A + + ++ + + WD G + H + +
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDIS-----TGISNRVFPDVHATMITGI 61
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
+ + + S+D+ +K+ V + ++ + +
Sbjct: 62 KTTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD 112
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 45.0 bits (104), Expect = 1e-06
Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 59 QWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118
+ T S D+++ +W+ + + V SV W + VSA
Sbjct: 232 WSPDNVRLATGSLDNSVIVWNMNKP---SDHPIIIKGAHAMSSVNSVIWL--NETTIVSA 286
Query: 119 SFDNSVKLWDL 129
D+++K W++
Sbjct: 287 GQDSNIKFWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 44.6 bits (103), Expect = 2e-06
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP--LFDMLGHEDKVMCVNWSDYR 155
+ D + S DNSV +W++ P + V V W +
Sbjct: 222 FHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNET 281
Query: 156 YIMSGGQDNSVRVF 169
I+S GQD++++ +
Sbjct: 282 TIVSAGQDSNIKFW 295
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.9 bits (130), Expect = 7e-10
Identities = 14/71 (19%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYI 157
H + ++ + + VS S +N +++LRS K+ ++L D++ VN+ +
Sbjct: 280 HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLV 338
Query: 158 MSGGQDNSVRV 168
+ +D +
Sbjct: 339 AAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 2e-09
Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 8/130 (6%)
Query: 46 ITLKGHKEA-ISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQS 104
TL+GH + I+ +Q+ + +IT + D ++++D+ S H V +
Sbjct: 6 TTLRGHMTSVITCLQFED-NYVITGADDKMIRVYDSINKKFLL------QLSGHDGGVWA 58
Query: 105 VRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDN 164
++++ + S V + V + + +YI++G +DN
Sbjct: 59 LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118
Query: 165 SVRVFKTKHQ 174
++ V+K +
Sbjct: 119 TLHVWKLPKE 128
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 1e-08
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 51 HKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPI 110
H + + D I+ S ++ I++ ++ G +V + + + SV +
Sbjct: 281 HTNLSAITTFYVSDNILVSGSENQFNIYN-----LRSGKLVHANILKDADQIWSVNFKG- 334
Query: 111 DPQLFVSASFDNSVKLWDL 129
L + D L L
Sbjct: 335 -KTLVAAVEKDGQSFLEIL 352
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.5 bits (90), Expect = 1e-04
Identities = 23/134 (17%), Positives = 49/134 (36%), Gaps = 5/134 (3%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
K L+ L GH + A+++ +++ S D T+++WD +KKG +
Sbjct: 43 KKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWD-----IKKGCCTHVFEGHNSTV 97
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGG 161
+ + V+ S DN++ +W L H+ ++ + Y +
Sbjct: 98 RCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 157
Query: 162 QDNSVRVFKTKHQP 175
+ + V
Sbjct: 158 RGHMASVRTVSGHG 171
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (129), Expect = 8e-10
Identities = 30/134 (22%), Positives = 61/134 (45%), Gaps = 19/134 (14%)
Query: 43 TPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
+ TL GHK I+ +Q+ +++ S D+T+++WD E + +
Sbjct: 169 EFVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIE---------CGACLRVLEGHE 218
Query: 103 QSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP--------LFDMLGHEDKVMCVNWSDY 154
+ VR D + VS ++D +K+WDL + P L ++ H +V + + +
Sbjct: 219 ELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE- 277
Query: 155 RYIMSGGQDNSVRV 168
I+S D+++ +
Sbjct: 278 FQIVSSSHDDTILI 291
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.5 bits (116), Expect = 4e-08
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 40 LQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKK---GAIVKSTFS 96
++ + + E + I++ ++D +K+WD + G + T
Sbjct: 205 IECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV 264
Query: 97 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWD 128
H V +++ D VS+S D+++ +WD
Sbjct: 265 EHSGRVFRLQF---DEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 8e-07
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 93 STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152
E + V D Q VS DN++K+WD + + + GH V+C+ +
Sbjct: 6 QRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYD 64
Query: 153 DYRYIM 158
+ I
Sbjct: 65 ERVIIT 70
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 8e-07
Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 11/107 (10%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
I+++S D T+K+W+ + + + +L VS S DN+++
Sbjct: 151 IVSASGDRTIKVWNTSTC---------EFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIR 201
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTK 172
LWD+ +L ++++ D + I+SG D ++V+
Sbjct: 202 LWDIECGA--CLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.6 bits (80), Expect = 0.002
Identities = 24/104 (23%), Positives = 51/104 (49%), Gaps = 8/104 (7%)
Query: 71 WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLR 130
D ++ +WD ++ H+ V V + D + VSAS D ++K+W+
Sbjct: 113 KDRSIAVWDMA---SPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTS 166
Query: 131 SPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQ 174
+ + + + GH+ + C+ + D R ++SG DN++R++ +
Sbjct: 167 TCE-FVRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECG 208
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.1 bits (123), Expect = 6e-09
Identities = 26/132 (19%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Query: 43 TPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
+ TL GH+ S ++ + +++ + D T+KIWD + G + T +
Sbjct: 208 NCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQCLQ------TLQGPNKHQ 260
Query: 103 QSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV----PLFDMLGHEDKVMCVNWS-DYRYI 157
+V + +++S D +VKLWDL++ + + G V + S
Sbjct: 261 SAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVC 320
Query: 158 MSGGQDNSVRVF 169
G ++ +
Sbjct: 321 AVGSRNGTEETK 332
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 9e-07
Identities = 24/117 (20%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
Query: 59 QWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118
+++ ++D +K+WD E T H V D VS
Sbjct: 143 VQYDGRRVVSGAYDFMVKVWDPETETCLH------TLQGHTNRVY---SLQFDGIHVVSG 193
Query: 119 SFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175
S D S+++WD+ + + + GH+ + D ++SG D++V+++ K
Sbjct: 194 SLDTSIRVWDVETGN-CIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQ 248
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 1e-06
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 94 TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD 153
H + V + VS S DN++K+W + K L ++GH V D
Sbjct: 11 VLKGHDDHVITC-LQF-CGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTGGVWSSQMRD 67
Query: 154 YRYIM 158
I
Sbjct: 68 NIIIS 72
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.4 bits (103), Expect = 2e-06
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 6/67 (8%)
Query: 43 TPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWV 102
LKGH + + + I++ S D+TLK+W A G + T H V
Sbjct: 7 KSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLR------TLVGHTGGV 60
Query: 103 QSVRWSP 109
S +
Sbjct: 61 WSSQMRD 67
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.3 bits (118), Expect = 2e-08
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
T D T+++WD + K T + Q V +S S D ++
Sbjct: 266 FATVGADATIRVWDVTTSKC----VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLN 321
Query: 126 LWDL 129
++L
Sbjct: 322 FYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 3e-07
Identities = 13/76 (17%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-VPLFDMLGHEDKVMCVN--WSDY 154
S +D Q F + D ++++WD+ + K V + + + V +
Sbjct: 249 EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN 308
Query: 155 RYIMSGGQDNSVRVFK 170
I+S D ++ ++
Sbjct: 309 GRIISLSLDGTLNFYE 324
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.0 bits (81), Expect = 0.002
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 5/83 (6%)
Query: 96 SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV-PLFDMLGHE-DKVMCVNWS- 152
S+ + + + + P + V+ D KV P+ GH V V +S
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 153 --DYRYIMSGGQDNSVRVFKTKH 173
+Y+ SG + V V+
Sbjct: 74 IKGSQYLCSGDESGKVIVWGWTF 96
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 50.6 bits (119), Expect = 2e-08
Identities = 10/149 (6%), Positives = 33/149 (22%), Gaps = 9/149 (6%)
Query: 27 IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK 86
+ + + + + + ++
Sbjct: 202 DPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINV 261
Query: 87 KGAIVKS--TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHED 144
+ S + A + +D+++ KV ++
Sbjct: 262 DPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLLKYDVKTRKV-----TEVKN 315
Query: 145 KVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
+ + S D + +M D + F +
Sbjct: 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLE 344
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 42.2 bits (97), Expect = 1e-05
Identities = 11/88 (12%), Positives = 23/88 (26%), Gaps = 12/88 (13%)
Query: 47 TLKGHKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSV 105
L+ S + L +D + + K + +
Sbjct: 271 PLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR----------KVTEVKNNLTDL 320
Query: 106 RWSPIDPQLFVSASFDNSVKLWDLRSPK 133
R S D + + D + + L P+
Sbjct: 321 RLSA-DRKTVMVRKDDGKIYTFPLEKPE 347
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 37.5 bits (85), Expect = 4e-04
Identities = 9/122 (7%), Positives = 25/122 (20%), Gaps = 9/122 (7%)
Query: 59 QWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKS-TFSSHKEWVQSVRWSPIDPQLFVS 117
+ S+ D + + K + P +
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVP-RSMTSEA 244
Query: 118 ASFDNSVKLWDLRSPKVP---LFDMLGHEDKVMCVNW----SDYRYIMSGGQDNSVRVFK 170
+D + V ++ E ++ + Y + + +
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304
Query: 171 TK 172
K
Sbjct: 305 VK 306
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 48.0 bits (112), Expect = 1e-07
Identities = 17/113 (15%), Positives = 40/113 (35%), Gaps = 3/113 (2%)
Query: 59 QWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSA 118
++ D T+ +++ G S + D SA
Sbjct: 197 YNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASA 256
Query: 119 SFDNSVKLWDLRSPKVP--LFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVF 169
S D ++K+W++ + KV + ED+ + + W+ + ++S + +
Sbjct: 257 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK-QALVSISANGFINFV 308
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.0 bits (107), Expect = 6e-07
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
I ++S D T+KIW+ + + K+ + Q + Q VS S + +
Sbjct: 253 IASASADKTIKIWN-----VATLKVEKTIPVGTRIEDQQLGIIW-TKQALVSISANGFIN 306
Query: 126 LWDL 129
+
Sbjct: 307 FVNP 310
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 43.0 bits (99), Expect = 6e-06
Identities = 14/88 (15%), Positives = 25/88 (28%), Gaps = 4/88 (4%)
Query: 89 AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMC 148
A+ S + + + +P + SV + S H +
Sbjct: 7 ALFPSLPRTARGTAVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLT-DTEIYTEHSHQTTV 63
Query: 149 VNWS-DYRYIMSGGQDNSVRVFKTKHQP 175
S Y SG +VR++ T
Sbjct: 64 AKTSPSGYYCASGDVHGNVRIWDTTQTT 91
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 35.6 bits (80), Expect = 0.002
Identities = 12/103 (11%), Positives = 27/103 (26%), Gaps = 8/103 (7%)
Query: 57 AVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 116
+ T + I ++ + ++ H + SP
Sbjct: 22 VLGNTPAGDKIQYCNGTSVYTVPVGSLTDTE------IYTEHSHQTTVAKTSP-SGYYCA 74
Query: 117 SASFDNSVKLWDLRSPKVPLFDML-GHEDKVMCVNWSDYRYIM 158
S +V++WD L + V ++W +
Sbjct: 75 SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRI 117
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 46.3 bits (108), Expect = 5e-07
Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 10/108 (9%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+I +++ + L + D + KS K + +P + +V + +
Sbjct: 11 MIVTNYPNNLHVVDVA-----SDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIY 65
Query: 126 LWDLRSPKVPLF-----DMLGHEDKVMCVNWSDYRYIMSGGQDNSVRV 168
DL + K + S + + + R+
Sbjct: 66 GIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRL 113
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.9 bits (107), Expect = 6e-07
Identities = 21/108 (19%), Positives = 34/108 (31%), Gaps = 10/108 (9%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
T+ + D +K G F+ E + SP DP N +
Sbjct: 223 PATADLLYGYLSVD-----LKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLA 275
Query: 126 LWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTK 172
+DL+ K+ + CV + + GG N + VF
Sbjct: 276 KYDLKQRKL--IKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 40.5 bits (93), Expect = 5e-05
Identities = 9/93 (9%), Positives = 23/93 (24%), Gaps = 8/93 (8%)
Query: 42 KTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEW 101
KT E + D + L +D + + K ++
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIK-------AANLDHT 293
Query: 102 VQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV 134
V + N + +++ + +
Sbjct: 294 YYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEK 325
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 45.6 bits (106), Expect = 8e-07
Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 11/117 (9%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKS-TFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 124
I+ + L + D +K A+ K T + +P + + + S+
Sbjct: 4 ILAPARPDKLVVIDT-----EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESL 58
Query: 125 KLWDLRSPKVPLFDMLGHEDKVMCVNWS-----DYRYIMSGGQDNSVRVFKTKHQPK 176
DL + + L ++ + + D + + + + + QP
Sbjct: 59 VKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPT 115
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (103), Expect = 2e-06
Identities = 17/124 (13%), Positives = 35/124 (28%), Gaps = 11/124 (8%)
Query: 50 GHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP 109
G +D +++ L D ++ G + + S +P
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMD-----LETGEMAMREVRIMDVFYFSTAVNP 250
Query: 110 IDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRV 168
+ F N ++ +DL + VN S D + GG +
Sbjct: 251 AKTRAFG---AYNVLESFDLEKNAS--IKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAA 305
Query: 169 FKTK 172
+ +
Sbjct: 306 YDAE 309
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 42.9 bits (99), Expect = 7e-06
Identities = 12/92 (13%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 67 ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKL 126
I +S + + D + + SP +++V+ + N V +
Sbjct: 6 IANSESDNISVIDVT-----SNKVTATI--PVGSNPMGAVISPDGTKVYVANAHSNDVSI 58
Query: 127 WDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIM 158
D + V G + + V+ + +
Sbjct: 59 IDTATNNVIATVPAGSSPQGVAVSPDGKQVYV 90
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 37.2 bits (84), Expect = 6e-04
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 91 VKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKV 134
+ + + +P +++V+ SF N+V + D + +
Sbjct: 236 ITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTI 278
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (93), Expect = 6e-05
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 1/69 (1%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+ D + + D + A +K S + S D A +
Sbjct: 76 LFVIGRDGKVNMIDLWMKEPTTVAEIK-IGSEARSIETSKMEGWEDKYAIAGAYWPPQYV 134
Query: 126 LWDLRSPKV 134
+ D + +
Sbjct: 135 IMDGETLEP 143
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 37.5 bits (85), Expect = 4e-04
Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 8/113 (7%)
Query: 67 ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKL 126
I S + +W+ +GA+ + VQ + SP L+V + V
Sbjct: 8 IASPESQQIHVWNLN----HEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63
Query: 127 WDL----RSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175
+ + + L + + + +V V + +
Sbjct: 64 YRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 116
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 37.1 bits (84), Expect = 6e-04
Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 8/72 (11%)
Query: 64 DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSP-IDPQLFVSASFDN 122
DE + + + DA+ G + S+ S P L+ ++ D
Sbjct: 271 DEWRHKTASRFVVVLDAKTGERLA-------KFEMGHEIDSINVSQDEKPLLYALSTGDK 323
Query: 123 SVKLWDLRSPKV 134
++ + D S +
Sbjct: 324 TLYIHDAESGEE 335
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 36.5 bits (83), Expect = 0.001
Identities = 5/76 (6%), Positives = 19/76 (25%), Gaps = 6/76 (7%)
Query: 60 WTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPID-PQLFVSA 118
E S + + S+ ++ + + ++
Sbjct: 279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPI-----SNGHDSDAIIAAQDGASDNYANS 333
Query: 119 SFDNSVKLWDLRSPKV 134
+ + ++D S +
Sbjct: 334 AGTEVLDIYDAASDQD 349
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 34.9 bits (79), Expect = 0.004
Identities = 9/115 (7%), Positives = 25/115 (21%), Gaps = 14/115 (12%)
Query: 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125
+T + + D + + + V R S + + D +
Sbjct: 35 SVTLRDAGQIALVDGDSKK------IVKVIDTG-YAVHISRMSA-SGRYLLVIGRDARID 86
Query: 126 LWDLRSPKV----PLFDMLGHEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQ 174
+ DL + + + + I + +
Sbjct: 87 MIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 183 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.94 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.94 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.93 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.93 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.92 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.91 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.91 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.91 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.91 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.9 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.88 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.87 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.87 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.86 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.86 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.84 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.83 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.83 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.83 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.82 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.8 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.79 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.74 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.73 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.62 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.54 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.53 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.48 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.46 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.45 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.42 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.29 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.2 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.15 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.14 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.1 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.09 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.03 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.95 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.95 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.82 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.38 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.35 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.33 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.29 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.23 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.02 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.96 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.86 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.73 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.69 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.66 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.53 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.44 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.42 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.35 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.2 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.16 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 96.61 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 96.0 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 95.85 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 95.69 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 95.66 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 95.05 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.83 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.26 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 91.73 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.69 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.94 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 90.34 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 88.99 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 88.91 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 88.83 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 86.95 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 84.79 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 84.79 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 84.66 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 83.23 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 83.21 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 81.99 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.94 E-value=1.5e-25 Score=157.34 Aligned_cols=154 Identities=23% Similarity=0.316 Sum_probs=127.4
Q ss_pred ceeEEEEEeecCcEEEEEE------eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEE
Q psy2113 8 ILTLGVIFMTVGALLTLTN------IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWD 79 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd 79 (183)
-.+.+++|+|++..+++.. +++| +....++...+.+|.+.|++++|+|++. +++|+.|+.|++||
T Consensus 103 ~~v~~v~~s~d~~~l~~~~~~~~~~~~v~-------~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d 175 (311)
T d1nr0a1 103 GPVKDISWDSESKRIAAVGEGRERFGHVF-------LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE 175 (311)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEE-------ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEE
T ss_pred Ccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccceeeeccccccccccccc
Confidence 3567889999999887764 2233 3344556677889999999999998764 78899999999999
Q ss_pred cCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe-------ccCCCcEEEEEec
Q psy2113 80 AELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM-------LGHEDKVMCVNWS 152 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~~~~~v~~~~~~ 152 (183)
+++.+. ...+..|...|.++.|+| +++++++++.|+.+++||.+++.. ...+ .+|...|++++|+
T Consensus 176 ~~~~~~------~~~~~~~~~~i~~v~~~p-~~~~l~~~~~d~~v~~~d~~~~~~-~~~~~~~~~~~~~h~~~V~~~~~s 247 (311)
T d1nr0a1 176 GPPFKF------KSTFGEHTKFVHSVRYNP-DGSLFASTGGDGTIVLYNGVDGTK-TGVFEDDSLKNVAHSGSVFGLTWS 247 (311)
T ss_dssp TTTBEE------EEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE-EEECBCTTSSSCSSSSCEEEEEEC
T ss_pred cccccc------ccccccccccccccccCc-cccccccccccccccccccccccc-cccccccccccccccccccccccC
Confidence 987654 567788999999999999 889999999999999999998764 3332 3688999999999
Q ss_pred CC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 153 DY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 153 ~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|+ .+|++|+.||.|++||+++++.
T Consensus 248 ~~~~~l~tgs~Dg~v~iwd~~t~~~ 272 (311)
T d1nr0a1 248 PDGTKIASASADKTIKIWNVATLKV 272 (311)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcE
Confidence 65 8999999999999999987754
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=1.2e-25 Score=161.08 Aligned_cols=161 Identities=14% Similarity=0.208 Sum_probs=128.6
Q ss_pred ceec-eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEE
Q psy2113 5 KFGI-LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW 78 (183)
Q Consensus 5 ~~~~-~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vw 78 (183)
+|+. +..+++|+|++.+++++. +.+|+. ...+...+..+++|.++|.+++|+|++. |++|+.|++|++|
T Consensus 4 ~~~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~-----~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vW 78 (371)
T d1k8kc_ 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-----SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78 (371)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEE-----ETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEC-----CCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEE
Confidence 3444 347889999999998764 666643 1223346778899999999999998765 8899999999999
Q ss_pred EcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcc---eEEeccCCCcEEEEEecCC-
Q psy2113 79 DAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP---LFDMLGHEDKVMCVNWSDY- 154 (183)
Q Consensus 79 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~---~~~~~~~~~~v~~~~~~~~- 154 (183)
|+.+.... ....+..|...|.+++|+| +++.+++|+.|+.+++|++...... ......|...|.+++|+|+
T Consensus 79 d~~~~~~~----~~~~~~~~~~~v~~i~~~p-~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~ 153 (371)
T d1k8kc_ 79 TLKGRTWK----PTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS 153 (371)
T ss_dssp EEETTEEE----EEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred eecccccc----ccccccccccccccccccc-ccccceeecccCcceeeeeecccccccccccccccccccccccccccc
Confidence 99765432 1344567889999999999 8899999999999999998776531 2345678899999999976
Q ss_pred cEEEEecCCCcEEEEEecCCC
Q psy2113 155 RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 155 ~~l~~~~~dg~i~iwd~~~~~ 175 (183)
.+|++|+.|+.|++||+....
T Consensus 154 ~~l~s~s~D~~v~v~~~~~~~ 174 (371)
T d1k8kc_ 154 VLLAAGSCDFKCRIFSAYIKE 174 (371)
T ss_dssp SEEEEEETTSCEEEEECCCTT
T ss_pred cceeccccCcEEEEEeeccCc
Confidence 899999999999999987654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=9e-25 Score=153.44 Aligned_cols=148 Identities=17% Similarity=0.233 Sum_probs=122.2
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~ 84 (183)
.....+.+....++.+. +.+| +....+++..+.+|.+.|++++|+|++. |++|+.|+.+++||++...
T Consensus 187 ~~~~~~~~~~~~~~~~~~d~~v~i~-------d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~ 259 (340)
T d1tbga_ 187 VMSLSLAPDTRLFVSGACDASAKLW-------DVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ 259 (340)
T ss_dssp EEEEEECTTSSEEEEEETTTEEEEE-------ETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred EeeeccccccceeEEeecCceEEEE-------ECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc
Confidence 34556677777776654 5555 3456677888999999999999998865 8899999999999998765
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQD 163 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d 163 (183)
... ......+...+.+++|+| ++++|++|+.||.|++||+.+++. +..+.+|..+|++++|+|+ .+|++|+.|
T Consensus 260 ~~~----~~~~~~~~~~i~~~~~s~-~~~~l~~g~~dg~i~iwd~~~~~~-~~~~~~H~~~V~~l~~s~d~~~l~s~s~D 333 (340)
T d1tbga_ 260 ELM----TYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTDDGMAVATGSWD 333 (340)
T ss_dssp EEE----EECCTTCCSCEEEEEECS-SSCEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred ccc----ccccccccCceEEEEECC-CCCEEEEEECCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEeCCCCEEEEEccC
Confidence 311 112345677899999999 889999999999999999999886 8889999999999999975 899999999
Q ss_pred CcEEEEE
Q psy2113 164 NSVRVFK 170 (183)
Q Consensus 164 g~i~iwd 170 (183)
|.|++||
T Consensus 334 g~v~iWd 340 (340)
T d1tbga_ 334 SFLKIWN 340 (340)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=1.5e-24 Score=152.16 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=129.1
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeC--CCeEEEEE
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSW--DHTLKIWD 79 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~--d~~v~vwd 79 (183)
.-.+.+++|+|+|.+++++. +++|++.. ........+..|.++|.+++|+|++. +++++. +..+++|+
T Consensus 58 ~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~ 132 (311)
T d1nr0a1 58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQ-----TTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFL 132 (311)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEESSS-----TTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEE
T ss_pred CCCEEEEEEeCCCCeEeccccCceEeeeeeec-----cccccccccccccCccccccccccccccccccccccccccccc
Confidence 34678889999999998876 77776532 22233456788999999999998876 666664 56699999
Q ss_pred cCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEE
Q psy2113 80 AELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIM 158 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~ 158 (183)
+++.+. ...+.+|...|.+++|+|++...+++|+.|+.|++||+++.+. ......|...|+++.|+|+ .+++
T Consensus 133 ~~~~~~------~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-~~~~~~~~~~i~~v~~~p~~~~l~ 205 (311)
T d1nr0a1 133 FDTGTS------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-KSTFGEHTKFVHSVRYNPDGSLFA 205 (311)
T ss_dssp TTTCCB------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-EEEECCCSSCEEEEEECTTSSEEE
T ss_pred cccccc------cccccccccccccccccccceeeeccccccccccccccccccc-ccccccccccccccccCccccccc
Confidence 987765 4467789999999999994444689999999999999998876 7788899999999999976 8999
Q ss_pred EecCCCcEEEEEecCCCC
Q psy2113 159 SGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 159 ~~~~dg~i~iwd~~~~~~ 176 (183)
+++.||.|++||++++..
T Consensus 206 ~~~~d~~v~~~d~~~~~~ 223 (311)
T d1nr0a1 206 STGGDGTIVLYNGVDGTK 223 (311)
T ss_dssp EEETTSCEEEEETTTCCE
T ss_pred cccccccccccccccccc
Confidence 999999999999887654
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=5.7e-24 Score=147.41 Aligned_cols=147 Identities=22% Similarity=0.474 Sum_probs=126.1
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCC--------------------
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVD-------------------- 64 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-------------------- 64 (183)
....++|++++..++.+. +.+| +.........+.+|...+.++.|+|++
T Consensus 145 ~~~~~~~~~~~~~l~~~~~d~~v~~~-------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (317)
T d1vyhc1 145 WVRMVRPNQDGTLIASCSNDQTVRVW-------VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPG 217 (317)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEE-------ETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------C
T ss_pred cceeeecccCCCEEEEEeCCCeEEEE-------eeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCC
Confidence 456788999999988765 4444 344566777888999999999987532
Q ss_pred -eEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCC
Q psy2113 65 -EIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHE 143 (183)
Q Consensus 65 -~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 143 (183)
.+++++.|+.|++||.++++. ...+.+|...|.+++++| ++++|++|+.||.|++||+++++. +..+.+|.
T Consensus 218 ~~~~~~~~d~~i~~~~~~~~~~------~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~h~ 289 (317)
T d1vyhc1 218 PFLLSGSRDKTIKMWDVSTGMC------LMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRC-MKTLNAHE 289 (317)
T ss_dssp CEEEEEETTSEEEEEETTTTEE------EEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTTSCC-CEEEECCS
T ss_pred ceeEeccCCCEEEEEECCCCcE------EEEEeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCCCcE-EEEEcCCC
Confidence 378899999999999987764 667889999999999999 889999999999999999999876 78899999
Q ss_pred CcEEEEEecCC-cEEEEecCCCcEEEEE
Q psy2113 144 DKVMCVNWSDY-RYIMSGGQDNSVRVFK 170 (183)
Q Consensus 144 ~~v~~~~~~~~-~~l~~~~~dg~i~iwd 170 (183)
..|++++|+++ ++|++|+.||+|++||
T Consensus 290 ~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 290 HFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99999999965 8999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=5.2e-23 Score=145.43 Aligned_cols=147 Identities=16% Similarity=0.199 Sum_probs=121.0
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
....+++|++++..++.+. +.+|++ ...+.+..+ .|.+.|.+++|+|++. +++++.|+.+++||++.
T Consensus 184 ~~v~~l~~s~~~~~~~~~~~d~~v~i~d~-------~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~ 255 (337)
T d1gxra_ 184 DGASCIDISNDGTKLWTGGLDNTVRSWDL-------REGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEET-------TTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred ccccccccccccccccccccccccccccc-------ccceeeccc-ccccceEEEEEcccccccceeccccccccccccc
Confidence 3456788999999888875 555533 344445444 4889999999998765 88999999999999987
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
.. ......|...|.+++|+| ++++|++++.||.|++||.++++. +. ...|...|.+++|+|+ ++|++|+
T Consensus 256 ~~-------~~~~~~~~~~i~~v~~s~-~g~~l~s~s~Dg~i~iwd~~~~~~-~~-~~~~~~~v~~~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 256 PD-------KYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGAS-IF-QSKESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp SC-------EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE-EE-EEECSSCEEEEEECTTSCEEEEEE
T ss_pred cc-------cccccccccccceEEECC-CCCEEEEEeCCCeEEEEECCCCCE-EE-EccCCCCEEEEEEeCCCCEEEEEe
Confidence 65 335667999999999999 889999999999999999999875 43 3457889999999975 8999999
Q ss_pred CCCcEEEEEec
Q psy2113 162 QDNSVRVFKTK 172 (183)
Q Consensus 162 ~dg~i~iwd~~ 172 (183)
.||+|++||+-
T Consensus 326 ~D~~I~vWdl~ 336 (337)
T d1gxra_ 326 GDKKATVYEVI 336 (337)
T ss_dssp TTSCEEEEEEE
T ss_pred CCCeEEEEEEE
Confidence 99999999973
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.6e-23 Score=148.88 Aligned_cols=157 Identities=23% Similarity=0.365 Sum_probs=113.3
Q ss_pred EeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCcc--
Q psy2113 15 FMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKK-- 87 (183)
Q Consensus 15 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~-- 87 (183)
+.+++.+++++. +.+|...................+|.+.|.+++|+|++. |++++.|+.+++||++......
T Consensus 213 ~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 292 (388)
T d1erja_ 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDS 292 (388)
T ss_dssp CSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------
T ss_pred cCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccc
Confidence 344777777655 555544322111111222334467899999999998765 8899999999999997654321
Q ss_pred ----CceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec------CC-cE
Q psy2113 88 ----GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS------DY-RY 156 (183)
Q Consensus 88 ----~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~------~~-~~ 156 (183)
..........|...|.+++|+| ++.+|++|+.||.|++||+++++. +..+.+|.+.|.++++. |+ .+
T Consensus 293 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~~~~~-~~~l~~H~~~V~~~~~~~~~~~spd~~~ 370 (388)
T d1erja_ 293 KTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNV 370 (388)
T ss_dssp ------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEE
T ss_pred ccccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECCCCcE-EEEEeCCCCCEEEEEEecCcccCCCCCE
Confidence 1222345567899999999999 889999999999999999999886 88899999999999864 33 78
Q ss_pred EEEecCCCcEEEEEecC
Q psy2113 157 IMSGGQDNSVRVFKTKH 173 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~ 173 (183)
|++|+.||+|++||++.
T Consensus 371 l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 371 FATGSGDCKARIWKYKK 387 (388)
T ss_dssp EEEEETTSEEEEEEEEE
T ss_pred EEEEeCCCEEEEEeeee
Confidence 99999999999999863
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=2.9e-24 Score=154.94 Aligned_cols=124 Identities=18% Similarity=0.232 Sum_probs=102.2
Q ss_pred cCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC---eEEEE
Q psy2113 51 HKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN---SVKLW 127 (183)
Q Consensus 51 h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg---~i~vw 127 (183)
+...+.+++|+|++.+++|+.|++|++||+++++..........+.+|..+|.+++|+| ++++|++|+.|+ .|++|
T Consensus 183 ~~~~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~l~sgs~D~t~~~i~lw 261 (393)
T d1sq9a_ 183 PSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP-QGSLLAIAHDSNSFGCITLY 261 (393)
T ss_dssp SCCCCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS-STTEEEEEEEETTEEEEEEE
T ss_pred CCCcEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc-ccceeeeecCCCCcceeeec
Confidence 45568899999999999999999999999988765333333345667999999999999 899999999887 59999
Q ss_pred eCCCCCcceEEe-------------ccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 128 DLRSPKVPLFDM-------------LGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 128 d~~~~~~~~~~~-------------~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|+++++. +..+ .+|...|++++|+|+ ++|++++.|++|++||+++++.
T Consensus 262 d~~~g~~-~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~ 323 (393)
T d1sq9a_ 262 ETEFGER-IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKER 323 (393)
T ss_dssp ETTTCCE-EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE
T ss_pred cccccee-eeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCE
Confidence 9998765 3333 479999999999976 8999999999999999988753
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.9e-23 Score=146.78 Aligned_cols=162 Identities=19% Similarity=0.301 Sum_probs=130.4
Q ss_pred eceeEEEEEeecCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 7 GILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
.-.+.+++|+|+|.+++++. +++|++.... ...........+|.+.|.+++|+|++. |++|+.|+.|++||+..
T Consensus 51 ~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~--~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~ 128 (337)
T d1gxra_ 51 GEVVCAVTISNPTRHVYTGGKGCVKVWDISHPG--NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128 (337)
T ss_dssp SSCCCEEEECSSSSEEEEECBSEEEEEETTSTT--CCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCC
T ss_pred CCcEEEEEECCCCCEEEEEECCEEEEEEccCCc--ccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccc
Confidence 44567889999999998865 7778654321 111222334467899999999998876 88999999999999876
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEec
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGG 161 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~ 161 (183)
.... ....+..|...+.+++|+| ++.++++++.|+.+++||+++.+. ......|...|.+++|+++ ..+++++
T Consensus 129 ~~~~----~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~-~~~~~~~~~~v~~l~~s~~~~~~~~~~ 202 (337)
T d1gxra_ 129 PTPR----IKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTL-VRQFQGHTDGASCIDISNDGTKLWTGG 202 (337)
T ss_dssp C--E----EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred cccc----ccccccccccccccccccc-cccccccccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 4431 2456778999999999999 888999999999999999998875 6778889999999999965 8999999
Q ss_pred CCCcEEEEEecCCCC
Q psy2113 162 QDNSVRVFKTKHQPK 176 (183)
Q Consensus 162 ~dg~i~iwd~~~~~~ 176 (183)
.|+.|++||+++++.
T Consensus 203 ~d~~v~i~d~~~~~~ 217 (337)
T d1gxra_ 203 LDNTVRSWDLREGRQ 217 (337)
T ss_dssp TTSEEEEEETTTTEE
T ss_pred cccccccccccccee
Confidence 999999999987654
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=2.7e-22 Score=140.60 Aligned_cols=162 Identities=14% Similarity=0.232 Sum_probs=131.5
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
.-.+.+++|+|++.+++++. +++|+ ....+.+..+..|...|.+++|+|++. +++|+.|+.+++|+..
T Consensus 55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd-------~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~ 127 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWD-------SYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLK 127 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEE-------TTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEESS
T ss_pred CCCEEEEEECCCCCEEEEEECCCceeeee-------cccceeEEEEecccccEEeeEeeccceeeeeecccceeeccccc
Confidence 34567889999999998876 77774 456677888999999999999998866 8899999999999975
Q ss_pred CCCCc---------------------------------------------------------------------------
Q psy2113 82 LGGMK--------------------------------------------------------------------------- 86 (183)
Q Consensus 82 ~~~~~--------------------------------------------------------------------------- 86 (183)
.....
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 207 (340)
T d1tbga_ 128 TREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDAS 207 (340)
T ss_dssp SSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTE
T ss_pred ccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCce
Confidence 43221
Q ss_pred ------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEE--eccCCCcEEEEEecCC-cEE
Q psy2113 87 ------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFD--MLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 87 ------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~l 157 (183)
....+...+.+|...|++++|+| ++.++++|+.||.|++||++.... ... ...+...|.+++|+++ .+|
T Consensus 208 v~i~d~~~~~~~~~~~~h~~~i~~v~~~p-~~~~l~s~s~d~~i~~~~~~~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l 285 (340)
T d1tbga_ 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQE-LMTYSHDNIICGITSVSFSKSGRLL 285 (340)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE-EEEECCTTCCSCEEEEEECSSSCEE
T ss_pred EEEEECCCCcEEEEEeCCCCCeEEEEECC-CCCEEEEEeCCCeEEEEeeccccc-ccccccccccCceEEEEECCCCCEE
Confidence 12233456678999999999999 889999999999999999998764 333 3466678999999965 899
Q ss_pred EEecCCCcEEEEEecCCCCC
Q psy2113 158 MSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~~~~~~ 177 (183)
++|+.||.|++||+.+++..
T Consensus 286 ~~g~~dg~i~iwd~~~~~~~ 305 (340)
T d1tbga_ 286 LAGYDDFNCNVWDALKADRA 305 (340)
T ss_dssp EEEETTSCEEEEETTTCCEE
T ss_pred EEEECCCEEEEEECCCCcEE
Confidence 99999999999999877543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=6.3e-23 Score=141.66 Aligned_cols=147 Identities=15% Similarity=0.284 Sum_probs=113.9
Q ss_pred EEEeecCcEEEEEE-----eccCCCCcccccccCccceEEE-eccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCC
Q psy2113 13 VIFMTVGALLTLTN-----IEVTSLPSFFQLILQKTPLITL-KGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 13 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~ 85 (183)
.++++++..++++. +++|.+. .......+ ..|...+.+++|+|++. |++|+.|+.|++||+.+...
T Consensus 124 ~~~~~~~~~~~v~~~~~~~v~~~~~~-------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~ 196 (287)
T d1pgua2 124 SAVSLSQNYVAVGLEEGNTIQVFKLS-------DLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV 196 (287)
T ss_dssp EEEEECSSEEEEEETTTSCEEEEETT-------EEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred eeeeccCcceeeeccccceeeeeecc-------ccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccc
Confidence 45667777766654 3333321 11222222 34778899999998876 88999999999999987653
Q ss_pred ccCceeEEEeecCCcceEEEEEecC---------CCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcE
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPI---------DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRY 156 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~---------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 156 (183)
. ...+..|...|.+++|+|. ++.++++|+.|+.|++||++++......+.+|...|++++|+|+..
T Consensus 197 ~-----~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~ 271 (287)
T d1pgua2 197 K-----TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST 271 (287)
T ss_dssp E-----ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE
T ss_pred c-----cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE
Confidence 1 2235679999999999873 3468999999999999999886655777889999999999998888
Q ss_pred EEEecCCCcEEEEEe
Q psy2113 157 IMSGGQDNSVRVFKT 171 (183)
Q Consensus 157 l~~~~~dg~i~iwd~ 171 (183)
|++++.||.|++||+
T Consensus 272 l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 272 LVSSGADACIKRWNV 286 (287)
T ss_dssp EEEEETTSCEEEEEE
T ss_pred EEEEECCCeEEEEEE
Confidence 999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.91 E-value=1e-22 Score=145.76 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=127.0
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
-.+.+++|+|++.+++++. +++|++. .....+...+.+|...|.+++|+|++. |++++.|+.+++|++..
T Consensus 52 ~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~-----~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~ 126 (371)
T d1k8kc_ 52 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLK-----GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQ 126 (371)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEEEE-----TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEET
T ss_pred CCEEEEEECCCCCEEEEEECCCeEEEEeec-----ccccccccccccccccccccccccccccceeecccCcceeeeeec
Confidence 3568889999999988765 6667542 223344556678999999999998876 89999999999999876
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCC-----------------cceEEeccCCCc
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPK-----------------VPLFDMLGHEDK 145 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~-----------------~~~~~~~~~~~~ 145 (183)
.... .........|...|.+++|+| ++.+|++|+.|+.+++||..... ........|...
T Consensus 127 ~~~~--~~~~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (371)
T d1k8kc_ 127 ENDW--WVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW 203 (371)
T ss_dssp TTTE--EEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC
T ss_pred cccc--ccccccccccccccccccccc-cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCc
Confidence 5431 122334567889999999999 88999999999999999986532 124455688899
Q ss_pred EEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 146 VMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 146 v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|.+++|+|+ ++|++++.|+.|++||+++++.
T Consensus 204 v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~ 235 (371)
T d1k8kc_ 204 VHGVCFSANGSRVAWVSHDSTVCLADADKKMA 235 (371)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEEGGGTTE
T ss_pred EEEEEeecccccccccccCCcceEEeeecccc
Confidence 999999975 8999999999999999987654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.2e-22 Score=143.02 Aligned_cols=163 Identities=16% Similarity=0.225 Sum_probs=123.7
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCCCc
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGGMK 86 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~~~ 86 (183)
...+++|++++..+++..-...... ........+.+..+.+|...|.+++|+|++. +++++.|+.+++||....+..
T Consensus 117 ~v~~v~~s~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~ 195 (325)
T d1pgua1 117 PISDISWDFEGRRLCVVGEGRDNFG-VFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195 (325)
T ss_dssp CEEEEEECTTSSEEEEEECCSSCSE-EEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEE
T ss_pred cEEEEEECCCCCccceeeccccceE-EEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccc
Confidence 3568899999998876542111111 1113345677888899999999999998754 678999999999998765431
Q ss_pred cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcE----EEEEecCCcEEEEecC
Q psy2113 87 KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKV----MCVNWSDYRYIMSGGQ 162 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v----~~~~~~~~~~l~~~~~ 162 (183)
. .......|...|.+++|+|+.+.++++++.|+.|++||+++++. +..+.+|..++ .++.|.++.+|++++.
T Consensus 196 ~---~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~-~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~ 271 (325)
T d1pgua1 196 A---SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-LKYIEDDQEPVQGGIFALSWLDSQKFATVGA 271 (325)
T ss_dssp E---EECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-EEECCBTTBCCCSCEEEEEESSSSEEEEEET
T ss_pred e---ecccccCCCCccEEeeeccccceeccccccccceeeeeeccccc-cccccccccccccceeeeeccCCCEEEEEeC
Confidence 1 11123467788999999996678999999999999999999886 77777777665 4555566789999999
Q ss_pred CCcEEEEEecCCCC
Q psy2113 163 DNSVRVFKTKHQPK 176 (183)
Q Consensus 163 dg~i~iwd~~~~~~ 176 (183)
|+.|+|||+++++.
T Consensus 272 D~~i~iwd~~~~~~ 285 (325)
T d1pgua1 272 DATIRVWDVTTSKC 285 (325)
T ss_dssp TSEEEEEETTTTEE
T ss_pred CCeEEEEECCCCCE
Confidence 99999999987653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.91 E-value=1.3e-22 Score=140.68 Aligned_cols=153 Identities=18% Similarity=0.289 Sum_probs=116.0
Q ss_pred eeEEEEEeecCcEEEEEE----eccCCCCcccccccCccc-eEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCC
Q psy2113 9 LTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTP-LITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAEL 82 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~ 82 (183)
....++|+|++..++++. +.+|++ ...+. ......|...|.+++|+|++. +++++.|+.+++||+.+
T Consensus 138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~-------~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~ 210 (299)
T d1nr0a2 138 NSSCVALSNDKQFVAVGGQDSKVHVYKL-------SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVAN 210 (299)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEEE-------ETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred cccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455678889988887765 555532 12221 223456899999999998765 88999999999999876
Q ss_pred CCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcc-eEEecc-CCCcEEEEEecCCcEEEEe
Q psy2113 83 GGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP-LFDMLG-HEDKVMCVNWSDYRYIMSG 160 (183)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~-~~~~v~~~~~~~~~~l~~~ 160 (183)
..... ....+..|...|.+++|+| ++.++++|+.||.|++||+++.... ...... +...+.++.|.++.+|+++
T Consensus 211 ~~~~~---~~~~~~~h~~~v~~l~~s~-~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~ 286 (299)
T d1nr0a2 211 NFELA---HTNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSA 286 (299)
T ss_dssp TTEES---CCCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEE
T ss_pred ccccc---ccccccccccccccccccc-cccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEECCCCEEEEE
Confidence 54321 1234567899999999999 8899999999999999999986542 233333 4467888888888899999
Q ss_pred cCCCcEEEEEec
Q psy2113 161 GQDNSVRVFKTK 172 (183)
Q Consensus 161 ~~dg~i~iwd~~ 172 (183)
+.||.|++||+.
T Consensus 287 s~D~~i~iWdl~ 298 (299)
T d1nr0a2 287 GQDSNIKFWNVP 298 (299)
T ss_dssp ETTSCEEEEECC
T ss_pred eCCCEEEEEecc
Confidence 999999999984
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.90 E-value=3.3e-22 Score=138.68 Aligned_cols=162 Identities=20% Similarity=0.249 Sum_probs=125.5
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEE-eccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITL-KGHKEAISAVQWTAVDEIITSSWDHTLKIWDAEL 82 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~ 82 (183)
-.+.+++|+|++.+++.+. +++|++ ..++.+..+ .+|...|.+++|+|++.+++++.|+.+++|+...
T Consensus 13 ~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~-------~~~~~~~~~~~~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~ 85 (299)
T d1nr0a2 13 KAITALSSSADGKTLFSADAEGHINSWDI-------STGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGG 85 (299)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEET-------TTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSS
T ss_pred CCcEEEEECCCCCEEEEEcCCCeEEEEEC-------CCCcEEEEEcCCCCCcEEEEEeeccceeecccceeeEEEeccCC
Confidence 3567889999999998865 677754 344445555 4688999999999999999999999999999754
Q ss_pred CCCc----------------------------------------------------------------------------
Q psy2113 83 GGMK---------------------------------------------------------------------------- 86 (183)
Q Consensus 83 ~~~~---------------------------------------------------------------------------- 86 (183)
....
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~ 165 (299)
T d1nr0a2 86 SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL 165 (299)
T ss_dssp SSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3211
Q ss_pred c-CceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcc--eEEeccCCCcEEEEEecCC-cEEEEecC
Q psy2113 87 K-GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVP--LFDMLGHEDKVMCVNWSDY-RYIMSGGQ 162 (183)
Q Consensus 87 ~-~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~--~~~~~~~~~~v~~~~~~~~-~~l~~~~~ 162 (183)
. ..........|...|.+++|+| ++.++++++.|+.|++||+.++... ...+..|...|++++|+|+ .+|++|+.
T Consensus 166 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~ 244 (299)
T d1nr0a2 166 SGASVSEVKTIVHPAEITSVAFSN-NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 244 (299)
T ss_dssp ETTEEEEEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccceEEEcC
Confidence 0 0001112345788899999999 8899999999999999999876531 3456678999999999966 89999999
Q ss_pred CCcEEEEEecCCCCC
Q psy2113 163 DNSVRVFKTKHQPKS 177 (183)
Q Consensus 163 dg~i~iwd~~~~~~~ 177 (183)
||.|++||++++...
T Consensus 245 dg~i~iwd~~~~~~~ 259 (299)
T d1nr0a2 245 DNSVIVWNMNKPSDH 259 (299)
T ss_dssp TSCEEEEETTCTTSC
T ss_pred CCEEEEEECCCCCcc
Confidence 999999999886543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=5.4e-21 Score=134.31 Aligned_cols=152 Identities=22% Similarity=0.425 Sum_probs=122.4
Q ss_pred EeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCc----
Q psy2113 15 FMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK---- 86 (183)
Q Consensus 15 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~---- 86 (183)
+++++.+++++. +++|+ ..+.+.+.++.+|.++|++++|+|++.|++|+.|+.|++|+.......
T Consensus 19 ~~~~~~~l~tgs~Dg~i~vWd-------~~~~~~~~~l~~H~~~V~~l~~s~~~~l~s~s~D~~i~iw~~~~~~~~~~~~ 91 (355)
T d1nexb2 19 LQFEDNYVITGADDKMIRVYD-------SINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFE 91 (355)
T ss_dssp EEEETTEEEEEETTTEEEEEE-------TTTTEEEEEEECCSSCEEEEEEETTTEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred EEECCCEEEEEeCCCeEEEEE-------CCCCcEEEEEECCCCCEEEEEEcCCCEEEEEecccccccccccccccccccc
Confidence 345677887765 77774 456778899999999999999999889999999999999998754321
Q ss_pred --------------------------------------------------------------------------------
Q psy2113 87 -------------------------------------------------------------------------------- 86 (183)
Q Consensus 87 -------------------------------------------------------------------------------- 86 (183)
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (355)
T d1nexb2 92 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHG 171 (355)
T ss_dssp CCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEET
T ss_pred cccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeecccccccccccc
Confidence
Q ss_pred -----------------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEE
Q psy2113 87 -----------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCV 149 (183)
Q Consensus 87 -----------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 149 (183)
..........++...+.++.++| .+..+++++.|+.|++||.+++.. ...+.+|...|.++
T Consensus 172 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~-~~~~~~h~~~v~~~ 249 (355)
T d1nexb2 172 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGEL-MYTLQGHTALVGLL 249 (355)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCCCEE
T ss_pred ceeeeecccceeeeeecccccceeeeeccccccccccccc-cceeeecccccceEEeeecccccc-cccccccccccccc
Confidence 00011112334556678888999 788999999999999999999876 78889999999999
Q ss_pred EecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 150 NWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 150 ~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+|++ ++|++++.||.|++||+++..+
T Consensus 250 ~~~~-~~l~~~~~dg~i~iwd~~~~~~ 275 (355)
T d1nexb2 250 RLSD-KFLVSAAADGSIRGWDANDYSR 275 (355)
T ss_dssp EECS-SEEEEECTTSEEEEEETTTCCE
T ss_pred cccc-ceeeeeecccccccccccccce
Confidence 9976 6899999999999999987654
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=7.8e-22 Score=138.88 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=108.5
Q ss_pred ceeEEEEEeecCcEEE-EEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC-Ce-EEEEeCCCeEEEEEc
Q psy2113 8 ILTLGVIFMTVGALLT-LTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV-DE-IITSSWDHTLKIWDA 80 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~-l~s~~~d~~v~vwd~ 80 (183)
..+.+++|+|++..+. ++. +.+|+..... ..........|...|.+++|+|+ +. +++++.|+.|++||+
T Consensus 160 ~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~----~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~ 235 (325)
T d1pgua1 160 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK----FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG 235 (325)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE----EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred cccccccccccccceEEEeecccccccccccccc----cceecccccCCCCccEEeeeccccceeccccccccceeeeee
Confidence 3467789999987533 332 5555433211 11112223467788999999986 33 889999999999999
Q ss_pred CCCCCccCceeEEEeecCCcceEEEEEe---cCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCC--cEE--EEEecC
Q psy2113 81 ELGGMKKGAIVKSTFSSHKEWVQSVRWS---PIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHED--KVM--CVNWSD 153 (183)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~---p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~v~--~~~~~~ 153 (183)
++++. ...+.+|...+..+.|+ | ++.+|++++.|+.|++||+++++. +..+..|.. .+. .+.|.+
T Consensus 236 ~~~~~------~~~l~~~~~~v~~~~~s~~~~-dg~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 307 (325)
T d1pgua1 236 KSGEF------LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVATG 307 (325)
T ss_dssp TTCCE------EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEEE
T ss_pred ccccc------cccccccccccccceeeeecc-CCCEEEEEeCCCeEEEEECCCCCE-EEEEEecCCcccCeEEEEEECC
Confidence 87765 56777787777655555 5 678999999999999999998875 555554443 333 445555
Q ss_pred CcEEEEecCCCcEEEEEe
Q psy2113 154 YRYIMSGGQDNSVRVFKT 171 (183)
Q Consensus 154 ~~~l~~~~~dg~i~iwd~ 171 (183)
+.+|++++.||.|++||+
T Consensus 308 ~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 308 NGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp TTEEEEEETTSCEEEEET
T ss_pred CCEEEEEECCCEEEEEEC
Confidence 678999999999999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.87 E-value=2.7e-20 Score=128.61 Aligned_cols=155 Identities=26% Similarity=0.330 Sum_probs=133.9
Q ss_pred eceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~ 81 (183)
...+.+++|+|++.+++++. +++|+ ..+.+.+..+.+|.+.|.+++|+|++. ++++..++.+.+|+..
T Consensus 17 ~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd-------~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (317)
T d1vyhc1 17 RSPVTRVIFHPVFSVMVSASEDATIKVWD-------YETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ 89 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEESSSCEEEEE-------TTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred CCCeEEEEEcCCCCEEEEEeCCCeEEEEE-------CCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence 34567899999999988875 77774 446677889999999999999998876 7888999999999987
Q ss_pred CCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEe
Q psy2113 82 LGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSG 160 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~ 160 (183)
.... ...+..|...+.++.++| ++..+++++.|+.+++||+++++. ...+.+|...+.+++|+++ .+|+++
T Consensus 90 ~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (317)
T d1vyhc1 90 GFEC------IRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASC 161 (317)
T ss_dssp SSCE------EECCCCCSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccc------ccccccccccceeeeccC-CCceEEeeccCcceeEeeccccee-eeEEccCCCcceeeecccCCCEEEEE
Confidence 6654 455678899999999999 888999999999999999999876 7788899999999999965 899999
Q ss_pred cCCCcEEEEEecCCCC
Q psy2113 161 GQDNSVRVFKTKHQPK 176 (183)
Q Consensus 161 ~~dg~i~iwd~~~~~~ 176 (183)
+.|+.|++|++++.+.
T Consensus 162 ~~d~~v~~~~~~~~~~ 177 (317)
T d1vyhc1 162 SNDQTVRVWVVATKEC 177 (317)
T ss_dssp ETTSCEEEEETTTCCE
T ss_pred eCCCeEEEEeecccee
Confidence 9999999999987653
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=3.7e-21 Score=138.54 Aligned_cols=157 Identities=15% Similarity=0.299 Sum_probs=108.5
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCC---eEEEEEcC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDH---TLKIWDAE 81 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~---~v~vwd~~ 81 (183)
+.+++|+|++. ++++. +++|++.... .....+....+.+|..+|++++|+|++. |++|+.|+ .+++||++
T Consensus 187 ~~~v~~s~dg~-lasgs~Dg~i~iwd~~~~~-~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~ 264 (393)
T d1sq9a_ 187 ATSVDISERGL-IATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETE 264 (393)
T ss_dssp CCEEEECTTSE-EEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEECCCCE-EEEEeCCCcEEEEeecccc-cccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccc
Confidence 55788999984 44432 7788654321 1112223345668999999999999876 88888886 49999998
Q ss_pred CCCCccC-------ceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcE--------
Q psy2113 82 LGGMKKG-------AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKV-------- 146 (183)
Q Consensus 82 ~~~~~~~-------~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v-------- 146 (183)
++..... ......+.+|...|++++|+| ++++|++|+.|++|++||++++++ +..+.+|.+.|
T Consensus 265 ~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fsp-d~~~l~S~s~D~~v~vWd~~~g~~-~~~l~gH~~~v~~~~~~~~ 342 (393)
T d1sq9a_ 265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDILA 342 (393)
T ss_dssp TCCEEEEECBC--------CCBSBSSCEEEEEECS-SSSEEEEEETTSEEEEEETTTTEE-EEEEECCGGGCSSGGGCCC
T ss_pred cceeeeeeccccccccceeeeecccCceeeeccCC-CCCeeEEECCCCEEEEEECCCCCE-EEEECCcCCcccCCccEEE
Confidence 7654211 111223357999999999999 889999999999999999999876 77888886443
Q ss_pred -------------EEEEecC-----------CcEEEEecCCCcEEEEE
Q psy2113 147 -------------MCVNWSD-----------YRYIMSGGQDNSVRVFK 170 (183)
Q Consensus 147 -------------~~~~~~~-----------~~~l~~~~~dg~i~iwd 170 (183)
.++.|.+ ...+++.+.|+.|++|.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~ 390 (393)
T d1sq9a_ 343 VDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390 (393)
T ss_dssp BCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred ECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence 4555432 13467777777777775
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=5e-20 Score=131.61 Aligned_cols=160 Identities=23% Similarity=0.304 Sum_probs=118.5
Q ss_pred ceeEEEEEeecCcEEEEEE---eccCCCCcccccc-----------cCccceEEEeccCCCeeEEEEccCCe-EEEEeCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN---IEVTSLPSFFQLI-----------LQKTPLITLKGHKEAISAVQWTAVDE-IITSSWD 72 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d 72 (183)
-.+.+++|+|+|.+++++. +++|++....... ...........|...|++++|+|++. |++|+.|
T Consensus 63 ~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~d 142 (388)
T d1erja_ 63 SVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAED 142 (388)
T ss_dssp SCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETT
T ss_pred CcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceecccc
Confidence 3467889999999998865 6677654321000 00011223345778899999998875 8899999
Q ss_pred CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 152 (183)
+.|++||....+. .....+|...|.++.+++ ++..+++++.++.+++||.++... ..... +.....++.+.
T Consensus 143 g~v~i~~~~~~~~------~~~~~~h~~~v~~~~~~~-~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~~~~~~~~ 213 (388)
T d1erja_ 143 RLIRIWDIENRKI------VMILQGHEQDIYSLDYFP-SGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVS 213 (388)
T ss_dssp SCEEEEETTTTEE------EEEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEEC
T ss_pred ccccccccccccc------cccccccccccccccccc-ccccccccccceeeeeeecccccc-ccccc-ccccccccccc
Confidence 9999999987664 566788999999999999 888999999999999999998764 44444 44455566666
Q ss_pred C--CcEEEEecCCCcEEEEEecCCCC
Q psy2113 153 D--YRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 153 ~--~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+ +.+|++++.||.|++||.+++..
T Consensus 214 ~~~~~~l~~~~~d~~i~i~~~~~~~~ 239 (388)
T d1erja_ 214 PGDGKYIAAGSLDRAVRVWDSETGFL 239 (388)
T ss_dssp STTCCEEEEEETTSCEEEEETTTCCE
T ss_pred CCCCCeEEEEcCCCeEEEeecccCcc
Confidence 3 48999999999999999987653
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=1.1e-20 Score=132.68 Aligned_cols=146 Identities=17% Similarity=0.251 Sum_probs=114.0
Q ss_pred ceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCC
Q psy2113 8 ILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~ 83 (183)
....++.|+|.+..+..+. +++| +......+..+.+|...|.++.|++ +.|++++.||.|++||+++.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~d~~i~i~-------d~~~~~~~~~~~~h~~~v~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 273 (355)
T d1nexb2 202 DRIYSTIYDHERKRCISASMDTTIRIW-------DLENGELMYTLQGHTALVGLLRLSD-KFLVSAAADGSIRGWDANDY 273 (355)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEE-------ETTTCCEEEEECCCSSCCCEEEECS-SEEEEECTTSEEEEEETTTC
T ss_pred cccccccccccceeeecccccceEEee-------ecccccccccccccccccccccccc-ceeeeeeccccccccccccc
Confidence 3456778999998888765 4445 3456677888999999999999974 57999999999999999765
Q ss_pred CCccCceeEEEeecCCcceEEEE-EecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecC
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVR-WSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQ 162 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~-~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~ 162 (183)
.. .+..|...+.++. +++ ++.++++| .|+.|++||+++++.....+.+|.+.|++++|+++..+++++.
T Consensus 274 ~~--------~~~~~~~~~~~~~~~~~-~~~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~ 343 (355)
T d1nexb2 274 SR--------KFSYHHTNLSAITTFYV-SDNILVSG-SENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEK 343 (355)
T ss_dssp CE--------EEEEECTTCCCCCEEEE-CSSEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEES
T ss_pred ce--------ecccccCCceEEEEEcC-CCCEEEEE-eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEEC
Confidence 42 3445666666665 455 67676666 5899999999998863346778999999999998888889999
Q ss_pred CCcEEEEEe
Q psy2113 163 DNSVRVFKT 171 (183)
Q Consensus 163 dg~i~iwd~ 171 (183)
||++.||.+
T Consensus 344 dg~~~l~~~ 352 (355)
T d1nexb2 344 DGQSFLEIL 352 (355)
T ss_dssp SSCEEEEEE
T ss_pred CCcEEEEEE
Confidence 999766644
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=2e-20 Score=130.43 Aligned_cols=164 Identities=10% Similarity=0.091 Sum_probs=107.5
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccC-C-eEEEEeCCCeEEEEEcCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAV-D-EIITSSWDHTLKIWDAELG 83 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~-~l~s~~~d~~v~vwd~~~~ 83 (183)
+.+++|+|++.+|+++. +++|++.. ......+....+|.++|.+++|+|+ + .+++|+.|+.+++|+....
T Consensus 14 I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~----~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~ 89 (342)
T d1yfqa_ 14 ISDIKIIPSKSLLLITSWDGSLTVYKFDI----QAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS 89 (342)
T ss_dssp EEEEEEEGGGTEEEEEETTSEEEEEEEET----TTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSS
T ss_pred EEEEEEeCCCCEEEEEECCCeEEEEEccC----CCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeeeecccc
Confidence 57899999999998875 77775431 1112223344479999999999965 4 4889999999999998765
Q ss_pred CCccC-------ceeEEEee-c-----------------------------------CCcceEEEEEecCCCCEEEEEeC
Q psy2113 84 GMKKG-------AIVKSTFS-S-----------------------------------HKEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 84 ~~~~~-------~~~~~~~~-~-----------------------------------~~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
..... ........ . .........+.+ .+..+++++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 168 (342)
T d1yfqa_ 90 PSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT-NSSRLIVGMN 168 (342)
T ss_dssp SSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE-CSSEEEEEES
T ss_pred cccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeec-cCCceeeecC
Confidence 43210 00000000 0 001112334455 5667888888
Q ss_pred CCeEEEEeCCCCCcce------------------------------------------------------------EEec
Q psy2113 121 DNSVKLWDLRSPKVPL------------------------------------------------------------FDML 140 (183)
Q Consensus 121 dg~i~vwd~~~~~~~~------------------------------------------------------------~~~~ 140 (183)
|+.|++||++...... ....
T Consensus 169 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (342)
T d1yfqa_ 169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT 248 (342)
T ss_dssp TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCC
Confidence 8999999886543200 0001
Q ss_pred cCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCCC
Q psy2113 141 GHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 141 ~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
.|...|++++|+|+ .+|++|+.||.|++||++++++..
T Consensus 249 ~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~ 287 (342)
T d1yfqa_ 249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287 (342)
T ss_dssp SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE
T ss_pred cccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEE
Confidence 34456789999976 899999999999999998876543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=7.1e-19 Score=122.73 Aligned_cols=143 Identities=22% Similarity=0.338 Sum_probs=111.1
Q ss_pred EEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccC
Q psy2113 13 VIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKG 88 (183)
Q Consensus 13 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 88 (183)
..+++++..++++. +++| +....+.+..+.+|...+.++.+++ +.|++++.|+.|++||....+.
T Consensus 181 ~~~~~~~~~l~s~~~dg~i~~~-------d~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~--- 249 (342)
T d2ovrb2 181 YSLQFDGIHVVSGSLDTSIRVW-------DVETGNCIHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQC--- 249 (342)
T ss_dssp EEEEECSSEEEEEETTSCEEEE-------ETTTCCEEEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCE---
T ss_pred ccccCCCCEEEEEeCCCeEEEe-------ecccceeeeEecccccceeEEecCC-CEEEEEcCCCEEEEEecccccc---
Confidence 34556777777665 5555 3445677888999999999998865 5899999999999999987654
Q ss_pred ceeEEEee---cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe-----ccCCCcEEEEEecCC-cEEEE
Q psy2113 89 AIVKSTFS---SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM-----LGHEDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 89 ~~~~~~~~---~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~-~~l~~ 159 (183)
...+. .|...+.++.+++ +++++|+.||.|++||+++++. +..+ .+|...|++++|+|+ .++++
T Consensus 250 ---~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~-i~~~~~~~~~~~~~~v~~v~~s~~~~~la~ 322 (342)
T d2ovrb2 250 ---LQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEF-IRNLVTLESGGSGGVVWRIRASNTKLVCAV 322 (342)
T ss_dssp ---EEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCE-EEEEEECTTGGGTCEEEEEEECSSEEEEEE
T ss_pred ---cccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCE-EEEEecccCCCCCCCEEEEEECCCCCEEEE
Confidence 33333 3566777777754 6999999999999999999876 4444 357788999999977 78899
Q ss_pred ecCCCc----EEEEEecC
Q psy2113 160 GGQDNS----VRVFKTKH 173 (183)
Q Consensus 160 ~~~dg~----i~iwd~~~ 173 (183)
|+.||+ |++||+..
T Consensus 323 g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 323 GSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp ECSSSSSCCEEEEEECCC
T ss_pred EeCCCCCeeEEEEEeCCC
Confidence 999985 99999864
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=3.3e-20 Score=129.35 Aligned_cols=128 Identities=11% Similarity=0.132 Sum_probs=98.5
Q ss_pred ceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 44 PLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
.+...++|.+.|++|+|+|++. |++|+.|++|+|||++...... ......+|..+|.+++|+|+++.++++|+.||
T Consensus 3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~---~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~ 79 (342)
T d1yfqa_ 3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV---DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE---EEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce---EEEEecCCCCCEEEEEEeCCCCCEEEEccccc
Confidence 3455689999999999998765 8999999999999997654311 12233469999999999996677899999999
Q ss_pred eEEEEeCCCCCcceEEeccCCC-cEEEEEec-CCcEEEEecCCCcEEEEEecCCC
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHED-KVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
.|++|+...... ......+.. ......+. ....+++++.|+.+++||++...
T Consensus 80 ~v~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~ 133 (342)
T d1yfqa_ 80 EILKVDLIGSPS-FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYG 133 (342)
T ss_dssp CEEEECSSSSSS-EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHT
T ss_pred ceeeeecccccc-cccccccccccccccccccccccccccccccccceeeccccc
Confidence 999999998776 444443333 33334444 45899999999999999987654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.9e-18 Score=120.50 Aligned_cols=149 Identities=27% Similarity=0.414 Sum_probs=115.6
Q ss_pred EeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCc----
Q psy2113 15 FMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMK---- 86 (183)
Q Consensus 15 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~---- 86 (183)
++++|.+++.+. +++|+ ..+.+++.++.+|.+.|.+++|++ +.|++|+.|+.+++|+.......
T Consensus 23 ~~~~g~~l~sgs~Dg~i~vWd-------~~~~~~~~~~~~h~~~V~~v~~~~-~~l~s~s~D~~~~~~~~~~~~~~~~~~ 94 (342)
T d2ovrb2 23 LQFCGNRIVSGSDDNTLKVWS-------AVTGKCLRTLVGHTGGVWSSQMRD-NIIISGSTDRTLKVWNAETGECIHTLY 94 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEE-------TTTCCEEEECCCCSSCEEEEEEET-TEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred EEECCCEEEEEeCCCeEEEEE-------CCCCCEEEEEeCCCCCEEEEEeCC-Cccccceecccccccccccccceeccc
Confidence 566788888765 77774 456778889999999999999986 48999999999999997643211
Q ss_pred ----------------------------------------------------------------------cCceeEEEee
Q psy2113 87 ----------------------------------------------------------------------KGAIVKSTFS 96 (183)
Q Consensus 87 ----------------------------------------------------------------------~~~~~~~~~~ 96 (183)
........+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~ 174 (342)
T d2ovrb2 95 GHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ 174 (342)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEEC
T ss_pred ccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEc
Confidence 0111122334
Q ss_pred cCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 97 SHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 97 ~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+|...+..+ .+ ++.++++++.||.|++||++..+. +....+|...+.++.+++ +++++++.||.|++||+...+.
T Consensus 175 ~~~~~~~~~--~~-~~~~l~s~~~dg~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~ 249 (342)
T d2ovrb2 175 GHTNRVYSL--QF-DGIHVVSGSLDTSIRVWDVETGNC-IHTLTGHQSLTSGMELKD-NILVSGNADSTVKIWDIKTGQC 249 (342)
T ss_dssp CCSSCEEEE--EE-CSSEEEEEETTSCEEEEETTTCCE-EEEECCCCSCEEEEEEET-TEEEEEETTSCEEEEETTTCCE
T ss_pred Ccccccccc--cC-CCCEEEEEeCCCeEEEeeccccee-eeEecccccceeEEecCC-CEEEEEcCCCEEEEEecccccc
Confidence 455444444 44 567999999999999999999876 788899999999999876 5899999999999999887654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=6.7e-18 Score=115.32 Aligned_cols=156 Identities=24% Similarity=0.414 Sum_probs=112.2
Q ss_pred cceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEE
Q psy2113 4 NKFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWD 79 (183)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd 79 (183)
...|+.|+ ++++.+++++. +++|+ ..+.+++..+.+|.++|.+++|+ +..|++|+.|+.+++|+
T Consensus 14 ~~~~V~c~----~~d~~~l~sgs~Dg~i~vWd-------~~~~~~~~~l~~H~~~V~~v~~~-~~~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 14 TSKGVYCL----QYDDQKIVSGLRDNTIKIWD-------KNTLECKRILTGHTGSVLCLQYD-ERVIITGSSDSTVRVWD 81 (293)
T ss_dssp SCCCEEEE----ECCSSEEEEEESSSCEEEEE-------SSSCCEEEEECCCSSCEEEEECC-SSEEEEEETTSCEEEEE
T ss_pred CCCCEEEE----EEcCCEEEEEeCCCeEEEEE-------CCCCcEEEEEecCCCCEeeeecc-cceeecccccccccccc
Confidence 34566653 46788888775 77784 45677889999999999999984 35799999999999999
Q ss_pred cCCCCCc-------------------------------------cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC
Q psy2113 80 AELGGMK-------------------------------------KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN 122 (183)
Q Consensus 80 ~~~~~~~-------------------------------------~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg 122 (183)
+...... ........+..|...+..+.+.+ ..+++++.|+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~s~d~ 158 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDR 158 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TEEEEEETTS
T ss_pred cccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cccccccCCC
Confidence 8765322 01111223345566666666644 4677778888
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.+++||.++.+. +..+.++...+..+.+++ ..+++++.||.|++||+++...
T Consensus 159 ~i~~~d~~~~~~-~~~~~~~~~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~ 210 (293)
T d1p22a2 159 TIKVWNTSTCEF-VRTLNGHKRGIACLQYRD-RLVVSGSSDNTIRLWDIECGAC 210 (293)
T ss_dssp EEEEEETTTCCE-EEEEECCSSCEEEEEEET-TEEEEEETTSCEEEEETTTCCE
T ss_pred ceeeecCCCCcE-EEEEcccccccccccCCC-CeEEEecCCCEEEEEeccccee
Confidence 888888888765 667777777887777764 5778888888888888776554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=2.7e-18 Score=121.07 Aligned_cols=146 Identities=16% Similarity=0.124 Sum_probs=114.9
Q ss_pred EEEEee-cCcEEEEEE---eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCC--CeEEEEEcCCCC
Q psy2113 12 GVIFMT-VGALLTLTN---IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWD--HTLKIWDAELGG 84 (183)
Q Consensus 12 ~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d--~~v~vwd~~~~~ 84 (183)
+--||| +|.+++... +.+|++ ..+.. ..+ +|...|.+++|+|+++ |++++.+ ..+++||.++++
T Consensus 7 ~~~fSP~dG~~~a~~~~g~v~v~d~-------~~~~~-~~~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~ 77 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSRGQAFIQDV-------SGTYV-LKV-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK 77 (360)
T ss_dssp EEEEEECGGGCEEEEETTEEEEECT-------TSSBE-EEC-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred cccccCCCCCEEEEEECCeEEEEEC-------CCCcE-EEc-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc
Confidence 356999 999998765 445533 23333 333 6999999999999987 5555544 379999998766
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEE----
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMS---- 159 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~---- 159 (183)
...+..|...+.+++|+| +++++++++.++.+++|+..+.+. ......|...+.+++|+|+ .+|+.
T Consensus 78 -------~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~la~~~~~ 148 (360)
T d1k32a3 78 -------AEKFEENLGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKP-TVIERSREAMITDFTISDNSRFIAYGFPL 148 (360)
T ss_dssp -------EEECCCCCCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCCEEECTTSCEEEEEEEE
T ss_pred -------EEEeeCCCceEEeeeecc-cccccceeccccccccccccccce-eeeeecccccccchhhccceeeeeeeccc
Confidence 446778999999999999 899999999999999999998876 6677888889999999976 67764
Q ss_pred ------ecCCCcEEEEEecCCC
Q psy2113 160 ------GGQDNSVRVFKTKHQP 175 (183)
Q Consensus 160 ------~~~dg~i~iwd~~~~~ 175 (183)
+..++.+++||+.+++
T Consensus 149 ~~~~~~~~~~~~~~v~d~~~~~ 170 (360)
T d1k32a3 149 KHGETDGYVMQAIHVYDMEGRK 170 (360)
T ss_dssp CSSTTCSCCEEEEEEEETTTTE
T ss_pred cccceeeccccceeeeccccCc
Confidence 3445679999998764
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=3.4e-18 Score=117.59 Aligned_cols=113 Identities=12% Similarity=0.182 Sum_probs=87.0
Q ss_pred EEccC-CeEEEEeCC-CeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcce
Q psy2113 59 QWTAV-DEIITSSWD-HTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL 136 (183)
Q Consensus 59 ~~~~~-~~l~s~~~d-~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~ 136 (183)
+++++ +.+++++.+ +.+++|++...... ......|...+++++|+| ++.+|++|+.||.|++||+.++....
T Consensus 125 ~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~g~~dg~i~i~d~~~~~~~~ 198 (287)
T d1pgua2 125 AVSLSQNYVAVGLEEGNTIQVFKLSDLEVS-----FDLKTPLRAKPSYISISP-SETYIAAGDVMGKILLYDLQSREVKT 198 (287)
T ss_dssp EEEECSSEEEEEETTTSCEEEEETTEEEEE-----EECSSCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred eeeccCcceeeeccccceeeeeecccccee-----eeeeeccCCceeEEEecc-Cccccccccccccccceeeccccccc
Confidence 34444 346666655 57999998654321 122234778899999999 88999999999999999999887544
Q ss_pred EEeccCCCcEEEEEecC-----------CcEEEEecCCCcEEEEEecCCCCC
Q psy2113 137 FDMLGHEDKVMCVNWSD-----------YRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 137 ~~~~~~~~~v~~~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
..+..|...|.+++|+| +.++++|+.|++|++||++++.+.
T Consensus 199 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~ 250 (287)
T d1pgua2 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI 250 (287)
T ss_dssp CCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC
T ss_pred ccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeE
Confidence 45778999999999975 258999999999999999875543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1.6e-16 Score=108.31 Aligned_cols=121 Identities=19% Similarity=0.390 Sum_probs=94.6
Q ss_pred ceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCe
Q psy2113 44 PLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123 (183)
Q Consensus 44 ~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 123 (183)
.+.....|...|+|++|+ +..|++|+.||+|+|||+.+.+. ...+.+|...|.+++| ++++|++|+.|+.
T Consensus 7 ~i~~~~~~~~~V~c~~~d-~~~l~sgs~Dg~i~vWd~~~~~~------~~~l~~H~~~V~~v~~---~~~~l~s~s~D~~ 76 (293)
T d1p22a2 7 RIHCRSETSKGVYCLQYD-DQKIVSGLRDNTIKIWDKNTLEC------KRILTGHTGSVLCLQY---DERVIITGSSDST 76 (293)
T ss_dssp CEECCCSSCCCEEEEECC-SSEEEEEESSSCEEEEESSSCCE------EEEECCCSSCEEEEEC---CSSEEEEEETTSC
T ss_pred EEeccCCCCCCEEEEEEc-CCEEEEEeCCCeEEEEECCCCcE------EEEEecCCCCEeeeec---ccceeeccccccc
Confidence 344556788899998873 45699999999999999988775 6788999999999987 4569999999999
Q ss_pred EEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 124 VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 124 i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
|++|+++.+.. ......+..... ........++++..++.+++||......
T Consensus 77 i~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (293)
T d1p22a2 77 VRVWDVNTGEM-LNTLIHHCEAVL-HLRFNNGMMVTCSKDRSIAVWDMASPTD 127 (293)
T ss_dssp EEEEESSSCCE-EEEECCCCSCEE-EEECCTTEEEEEETTSCEEEEECSSSSC
T ss_pred ccccccccccc-cccccccccccc-cccccccceeecccccceeEeecccccc
Confidence 99999998875 444443333333 2333457889999999999999887654
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.73 E-value=1.2e-16 Score=112.48 Aligned_cols=151 Identities=7% Similarity=-0.007 Sum_probs=119.8
Q ss_pred eceeEEEEEeecCcEEEEEE------eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEE
Q psy2113 7 GILTLGVIFMTVGALLTLTN------IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWD 79 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd 79 (183)
+....+++|+|+|..++... +.+|. . .......+..|...|.+++|+|++. |++++.++.+++|+
T Consensus 42 ~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d-------~-~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~ 113 (360)
T d1k32a3 42 PLRIRYVRRGGDTKVAFIHGTREGDFLGIYD-------Y-RTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVD 113 (360)
T ss_dssp CSCEEEEEECSSSEEEEEEEETTEEEEEEEE-------T-TTCCEEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCCEEEEEE-------C-CCCcEEEeeCCCceEEeeeecccccccceecccccccccc
Confidence 34567899999999887654 33442 2 2344567788999999999999876 88999999999999
Q ss_pred cCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe----------CCCeEEEEeCCCCCcceEEeccCCCcEEEE
Q psy2113 80 AELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS----------FDNSVKLWDLRSPKVPLFDMLGHEDKVMCV 149 (183)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~ 149 (183)
..+.+. ...+..|...+.+++|+| ++++|+.+. .++.+++||..+++ ......+...+..+
T Consensus 114 ~~~~~~------~~~~~~~~~~~~~~~~sp-dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~--~~~~~~~~~~~~~~ 184 (360)
T d1k32a3 114 LETGKP------TVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAP 184 (360)
T ss_dssp TTTCCE------EEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEE
T ss_pred ccccce------eeeeecccccccchhhcc-ceeeeeeeccccccceeeccccceeeeccccCc--eeeecccccccccc
Confidence 987765 556778888999999999 788887543 34579999999876 45566677888999
Q ss_pred EecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 150 NWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 150 ~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
.|+|+ +.|++++.++.+.+||....
T Consensus 185 ~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 185 AFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp EECTTSCEEEEEESCCCCCEECSSSS
T ss_pred cccCCCCEEEEEeCCCceEccccccc
Confidence 99966 89999999999999997654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.62 E-value=3.7e-15 Score=108.03 Aligned_cols=84 Identities=12% Similarity=0.128 Sum_probs=62.7
Q ss_pred EEEeecCCcceEEEEEecCCCCEEEE-------EeCCCeEEEEeCCCCCcceEE--------eccCCCcEEEEEecCC-c
Q psy2113 92 KSTFSSHKEWVQSVRWSPIDPQLFVS-------ASFDNSVKLWDLRSPKVPLFD--------MLGHEDKVMCVNWSDY-R 155 (183)
Q Consensus 92 ~~~~~~~~~~v~~~~~~p~~~~~l~~-------~~~dg~i~vwd~~~~~~~~~~--------~~~~~~~v~~~~~~~~-~ 155 (183)
...+.+|...+..++|+| ++.++++ ++.|++|++||+++++..... +..+...|..++|+|+ +
T Consensus 296 ~~~l~g~~~~v~~v~~sP-dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk 374 (426)
T d1hzua2 296 VAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGD 374 (426)
T ss_dssp EEEEECSSSCCCCEECCT-TCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSS
T ss_pred eEEEecCCCceeEEEcCC-CCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCC
Confidence 345667888899999999 7888884 556889999999998753222 2245667999999976 5
Q ss_pred EE-EEe----cCCCcEEEEEecCCCC
Q psy2113 156 YI-MSG----GQDNSVRVFKTKHQPK 176 (183)
Q Consensus 156 ~l-~~~----~~dg~i~iwd~~~~~~ 176 (183)
++ +++ +.+|.|+|||.++.+.
T Consensus 375 ~i~vs~~~~~~~~~~i~v~D~~T~k~ 400 (426)
T d1hzua2 375 EVWFSVWNGKNDSSALVVVDDKTLKL 400 (426)
T ss_dssp EEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred EEEEEEecCCCCCCeEEEEECCCCeE
Confidence 55 443 4588899999988763
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.54 E-value=2e-12 Score=88.40 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=54.7
Q ss_pred cceEEEEEecCCCCEEEEEe---CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE-EEecCCCcEEEEEecCC
Q psy2113 100 EWVQSVRWSPIDPQLFVSAS---FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI-MSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 100 ~~v~~~~~~p~~~~~l~~~~---~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l-~~~~~dg~i~iwd~~~~ 174 (183)
..+..+++++ ++..++.+. .++.|++||..+++. ...+.. ...+..++|+|+ ++| ++++.|+.|++||++++
T Consensus 200 ~~~~~~~~~~-~g~~~~v~~~~~~~~~v~v~D~~t~~~-~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 200 AAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKI-TARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp SEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEE-EEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred CCcceeeccc-cccccccccccceeeeeeeeecCCCeE-EEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 3466788888 566554443 346899999998875 444443 456899999976 655 67888999999999887
Q ss_pred CCC
Q psy2113 175 PKS 177 (183)
Q Consensus 175 ~~~ 177 (183)
+..
T Consensus 277 ~~~ 279 (301)
T d1l0qa2 277 TIT 279 (301)
T ss_dssp EEE
T ss_pred eEE
Confidence 643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.53 E-value=2.3e-13 Score=94.85 Aligned_cols=76 Identities=20% Similarity=0.243 Sum_probs=55.4
Q ss_pred CCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 98 HKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 98 ~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
+...+..+.+++ ++..++... ++.+.+||..+++. +... .+...+.+++|+|+ .++++++.|+.|++||+++.+.
T Consensus 250 ~~~~~~~~~~~~-~~~~~~~~~-~~~v~v~d~~~~~~-~~~~-~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~ 325 (346)
T d1jmxb_ 250 LTELYFTGLRSP-KDPNQIYGV-LNRLAKYDLKQRKL-IKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEK 325 (346)
T ss_dssp CSSCEEEEEECS-SCTTEEEEE-ESEEEEEETTTTEE-EEEE-ECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEE
T ss_pred ccceeEEEEEeC-CCCEEEEec-CCeEEEEECCCCcE-EEEE-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCE
Confidence 444556666777 444444444 46899999998875 3333 34557899999965 8999999999999999998764
Q ss_pred C
Q psy2113 177 S 177 (183)
Q Consensus 177 ~ 177 (183)
.
T Consensus 326 i 326 (346)
T d1jmxb_ 326 V 326 (346)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.48 E-value=1.9e-12 Score=93.93 Aligned_cols=134 Identities=10% Similarity=-0.018 Sum_probs=96.7
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCE-E
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQL-F 115 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~-l 115 (183)
+....+.+..+..+. .+..++|+|+|+ +++++.|+.+++||+.+.+... ...+.....|.+.+.+..|+| ++++ +
T Consensus 48 D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~-~~~i~~~~~~~~~~~s~~~Sp-DG~~l~ 124 (432)
T d1qksa2 48 DGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKIGSEARSIETSKMEGW-EDKYAI 124 (432)
T ss_dssp ETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEECCSEEEEEEECCSTTC-TTTEEE
T ss_pred ECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE-EEEEecCCCCCCeEEecccCC-CCCEEE
Confidence 445777788888774 689999999987 7788999999999998765421 011112234556667777888 6665 5
Q ss_pred EEEeCCCeEEEEeCCCCCcceEEecc-----------CCCcEEEEEecCC--cEEEEecCCCcEEEEEecCCC
Q psy2113 116 VSASFDNSVKLWDLRSPKVPLFDMLG-----------HEDKVMCVNWSDY--RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 116 ~~~~~dg~i~vwd~~~~~~~~~~~~~-----------~~~~v~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~ 175 (183)
+++..++.+++||..+++. +..... +......+.++++ ..+++...++.|.+||..+.+
T Consensus 125 vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~ 196 (432)
T d1qksa2 125 AGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 196 (432)
T ss_dssp EEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred EEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCC
Confidence 7888899999999998875 444433 3345667888854 455777888999999987654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=2.8e-12 Score=93.03 Aligned_cols=167 Identities=16% Similarity=0.106 Sum_probs=108.8
Q ss_pred ceeceeEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEE---eccCCCeeEEEEccCCe--EEEEeCCCeE
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITL---KGHKEAISAVQWTAVDE--IITSSWDHTL 75 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~--l~s~~~d~~v 75 (183)
+.|....+++|+|||+++++.+ +.+|++. ......+..+ ..|.+.+.+..|+|+|+ +++++.++.+
T Consensus 59 ~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~-----t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v 133 (432)
T d1qksa2 59 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW-----MKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQY 133 (432)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSEEEEEETT-----SSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred eCCCCeeEEEECCCCCEEEEEcCCCCEEEEEee-----CCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeE
Confidence 3455678999999999998865 4455432 1122222232 34556666777788886 4678889999
Q ss_pred EEEEcCCCCCccCceeEE-----EeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEE
Q psy2113 76 KIWDAELGGMKKGAIVKS-----TFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVN 150 (183)
Q Consensus 76 ~vwd~~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~ 150 (183)
++||..+.+......... ....+......+.++|++..++++...++.|.+||..+.+........+...+..++
T Consensus 134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~ 213 (432)
T d1qksa2 134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG 213 (432)
T ss_dssp EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE
T ss_pred EEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccce
Confidence 999998876521100000 011244567788999944455677778899999999887642223334566789999
Q ss_pred ecCC-cEEEEec-CCCcEEEEEecCCCC
Q psy2113 151 WSDY-RYIMSGG-QDNSVRVFKTKHQPK 176 (183)
Q Consensus 151 ~~~~-~~l~~~~-~dg~i~iwd~~~~~~ 176 (183)
|+|+ .++++++ .++.+.++|.++.+.
T Consensus 214 ~spdg~~~~va~~~~~~v~v~d~~~~~~ 241 (432)
T d1qksa2 214 LDGSHRYFITAANARNKLVVIDTKEGKL 241 (432)
T ss_dssp ECTTSCEEEEEEGGGTEEEEEETTTTEE
T ss_pred ECCCCCEEEEeccccceEEEeecccceE
Confidence 9976 6665555 455788888876543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.45 E-value=4.5e-13 Score=96.90 Aligned_cols=103 Identities=10% Similarity=0.038 Sum_probs=79.4
Q ss_pred EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcce-EEe---cc
Q psy2113 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPL-FDM---LG 141 (183)
Q Consensus 66 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~---~~ 141 (183)
+++.+.|++|+|||+.+++. +..+..| ..+..++|+| +++++++++.|+.+++||+.+++... ..+ .+
T Consensus 35 ~V~~~~dg~v~vwD~~t~~~------~~~l~~g-~~~~~vafSP-DGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~ 106 (426)
T d1hzua2 35 SVTLRDAGQIALVDGDSKKI------VKVIDTG-YAVHISRMSA-SGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIE 106 (426)
T ss_dssp EEEETTTTEEEEEETTTCSE------EEEEECC-SSEEEEEECT-TSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSE
T ss_pred EEEEcCCCEEEEEECCCCcE------EEEEeCC-CCeeEEEECC-CCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCC
Confidence 57788899999999998875 5667665 4589999999 89999999999999999999887422 122 24
Q ss_pred CCCcEEEEEecCC-cEE-EEecCCCcEEEEEecCCCC
Q psy2113 142 HEDKVMCVNWSDY-RYI-MSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 142 ~~~~v~~~~~~~~-~~l-~~~~~dg~i~iwd~~~~~~ 176 (183)
|...+.+++|+|+ +++ +++..++.+++||......
T Consensus 107 ~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~ 143 (426)
T d1hzua2 107 ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 143 (426)
T ss_dssp EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred CcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce
Confidence 5555666677755 665 5556899999999887653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.42 E-value=1.4e-11 Score=85.29 Aligned_cols=162 Identities=15% Similarity=0.177 Sum_probs=104.5
Q ss_pred eeEEEEEeecCcEEEEEEec----cCCCC-----cccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEE
Q psy2113 9 LTLGVIFMTVGALLTLTNIE----VTSLP-----SFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIW 78 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vw 78 (183)
...+++|+|++..+...... .+... ....+....+....+. +...+..++|+|++. +++++ +.+.+|
T Consensus 83 ~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~--~~~~~~ 159 (337)
T d1pbyb_ 83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE-APRQITMLAWARDGSKLYGLG--RDLHVM 159 (337)
T ss_dssp CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEE-CCSSCCCEEECTTSSCEEEES--SSEEEE
T ss_pred ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecc-ccCCceEEEEcCCCCEEEEEc--CCccee
Confidence 34578899999988776521 11111 0112333445555554 455688999999887 55655 446778
Q ss_pred EcCCCCCc------------------------------------------------------------cCceeEEEeecC
Q psy2113 79 DAELGGMK------------------------------------------------------------KGAIVKSTFSSH 98 (183)
Q Consensus 79 d~~~~~~~------------------------------------------------------------~~~~~~~~~~~~ 98 (183)
|..+.... ........+..+
T Consensus 160 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (337)
T d1pbyb_ 160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239 (337)
T ss_dssp ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred eeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC
Confidence 87653211 000011122334
Q ss_pred CcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCCC
Q psy2113 99 KEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 99 ~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
...+..+.++| ++.+++.+ ++.+++||+.+.+. +... .+...+.+++|+|+ .+|++++.|+.|++||.++.+..
T Consensus 240 ~~~~~~~~~~~-~~~~~~~~--~~~i~v~d~~~~~~-~~~~-~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v 314 (337)
T d1pbyb_ 240 DVFYFSTAVNP-AKTRAFGA--YNVLESFDLEKNAS-IKRV-PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp SSCEEEEEECT-TSSEEEEE--ESEEEEEETTTTEE-EEEE-ECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred CcceEEEEecc-cceEEEEc--cccEEEEECCCCcE-EEEE-cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence 55566777777 66666654 58999999999875 4333 45667899999965 89999999999999999987654
Q ss_pred C
Q psy2113 178 G 178 (183)
Q Consensus 178 ~ 178 (183)
.
T Consensus 315 ~ 315 (337)
T d1pbyb_ 315 G 315 (337)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.29 E-value=3.5e-10 Score=76.98 Aligned_cols=128 Identities=14% Similarity=0.138 Sum_probs=93.1
Q ss_pred ccCccceEEEeccCCCeeEEEEccCCe-E-EEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEE
Q psy2113 39 ILQKTPLITLKGHKEAISAVQWTAVDE-I-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFV 116 (183)
Q Consensus 39 ~~~~~~~~~~~~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 116 (183)
..+.+.+.++... .....++|+|+++ + ++++.++.|++||+.+.+. ...+..+. .+..+.+++++...++
T Consensus 19 ~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~------~~~~~~~~-~~~~~~~~~~~~~~~~ 90 (301)
T d1l0qa2 19 VTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV------IATVPAGS-SPQGVAVSPDGKQVYV 90 (301)
T ss_dssp TTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE------EEEEECSS-SEEEEEECTTSSEEEE
T ss_pred CCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce------eeeeeccc-cccccccccccccccc
Confidence 3455666666543 4578999999876 4 5777899999999987764 45555554 5688999994444666
Q ss_pred EEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-c-EEEEecCCCcEEEEEecCCCC
Q psy2113 117 SASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-R-YIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 117 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~ 176 (183)
++..++.+.+|+..+++. ...+. +...+..+.|+++ . .++++..++.+.+|+..+...
T Consensus 91 ~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~ 150 (301)
T d1l0qa2 91 TNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV 150 (301)
T ss_dssp EETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE
T ss_pred cccccceeeeccccccee-eeecc-ccccceEEEeecCCCeeeeeeccccceeeeeccccce
Confidence 677788999999998764 44444 4456788999965 4 456777788999999877653
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.20 E-value=8.3e-11 Score=81.57 Aligned_cols=111 Identities=15% Similarity=0.105 Sum_probs=80.5
Q ss_pred EEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEee-cCCcceEEEEEecCCCCEE-EEEeCCCeEEEEeCCCCCc
Q psy2113 58 VQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFS-SHKEWVQSVRWSPIDPQLF-VSASFDNSVKLWDLRSPKV 134 (183)
Q Consensus 58 ~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~vwd~~~~~~ 134 (183)
++|++++. |++++.+++|.+||+.+.+. ...+. .+...+.+++|+| +++++ +++..++.|.+||+.+++.
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~------~~t~~~~~~~~p~~l~~sp-DG~~l~v~~~~~~~v~~~d~~t~~~ 74 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTV------YKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKN 74 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEE------EEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCE------EEEEEcCCCCCcceEEECC-CCCEEEEEECCCCcEEEEeCccCee
Confidence 46777776 88999999999999998765 45554 4556788999999 66655 6667889999999998875
Q ss_pred ceEEeccCC------CcEEEEEecCC-cEEEEec------------CCCcEEEEEecCCCC
Q psy2113 135 PLFDMLGHE------DKVMCVNWSDY-RYIMSGG------------QDNSVRVFKTKHQPK 176 (183)
Q Consensus 135 ~~~~~~~~~------~~v~~~~~~~~-~~l~~~~------------~dg~i~iwd~~~~~~ 176 (183)
+....... ..+..++|+|+ .++++++ .++.+.+||..+++.
T Consensus 75 -~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 134 (346)
T d1jmxb_ 75 -TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 134 (346)
T ss_dssp -EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred -eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEeccccee
Confidence 43333221 23457889865 6666554 467789998877543
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.15 E-value=2.1e-09 Score=74.07 Aligned_cols=127 Identities=10% Similarity=0.027 Sum_probs=89.2
Q ss_pred cccCccceEEEecc--CCCeeEEEEccCCe-E-EEEeCCCeEEEEEcCCCCCccCceeEEEeecCC-----cceEEEEEe
Q psy2113 38 LILQKTPLITLKGH--KEAISAVQWTAVDE-I-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHK-----EWVQSVRWS 108 (183)
Q Consensus 38 ~~~~~~~~~~~~~h--~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~ 108 (183)
+..+.+.+..+..+ ...+.+++|+|+|+ + ++++.++.|.+||+.+++. ...+..+. ..+..++|+
T Consensus 17 D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~------~~~~~~~~~~~~~~~~~~v~~s 90 (337)
T d1pbyb_ 17 DTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET------LGRIDLSTPEERVKSLFGAALS 90 (337)
T ss_dssp ETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE------EEEEECCBTTEEEECTTCEEEC
T ss_pred ECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE------EEEEecCCCcccccceeeEEEc
Confidence 33455666667543 45678999999986 3 5677899999999998775 33343332 334578999
Q ss_pred cCCCCEEEEEe------------CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCC
Q psy2113 109 PIDPQLFVSAS------------FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 109 p~~~~~l~~~~------------~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~ 175 (183)
| ++..++.+. .+..+.+||..+.+. ...+. +...+..++|+++ .++++++. .+.+||..+++
T Consensus 91 ~-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~ 165 (337)
T d1pbyb_ 91 P-DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITMLAWARDGSKLYGLGR--DLHVMDPEAGT 165 (337)
T ss_dssp T-TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCEEECTTSSCEEEESS--SEEEEETTTTE
T ss_pred C-CCcEEEEeecCCcceeeeccccccceeeccccCCeE-EEecc-ccCCceEEEEcCCCCEEEEEcC--CcceeeeecCc
Confidence 9 777776665 357889999998774 44443 4456788999965 77877764 46788877653
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=3.9e-10 Score=77.92 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=74.5
Q ss_pred EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEE-EEeCCCeEEEEeCCCCCcceE--EeccC
Q psy2113 66 IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFV-SASFDNSVKLWDLRSPKVPLF--DMLGH 142 (183)
Q Consensus 66 l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~-~~~~dg~i~vwd~~~~~~~~~--~~~~~ 142 (183)
+++++.+++|++|++....... ......|.+.+..++|+| ++++|+ ++..|+.|.+|++........ ....+
T Consensus 7 ~v~~~~~~~I~v~~~~~~~~l~----~~~~~~~~~~v~~la~sp-DG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~ 81 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEGALT----LTQVVDVPGQVQPMVVSP-DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESAL 81 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEE----EEEEEECSSCCCCEEECT-TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEC
T ss_pred EEECCCCCcEEEEEEcCCCCeE----EEEEEcCCCCEeEEEEeC-CCCEEEEEECCCCeEEEEEEeCCCCcEEEeeeccc
Confidence 6788899999999997544211 223346888999999999 777774 455589999999986653221 22334
Q ss_pred CCcEEEEEecCC-cEEEEecC-CCcEEEEEecCCC
Q psy2113 143 EDKVMCVNWSDY-RYIMSGGQ-DNSVRVFKTKHQP 175 (183)
Q Consensus 143 ~~~v~~~~~~~~-~~l~~~~~-dg~i~iwd~~~~~ 175 (183)
...+..++|+|+ +++++++. ++.|.+|+.....
T Consensus 82 ~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~ 116 (333)
T d1ri6a_ 82 PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGL 116 (333)
T ss_dssp SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTE
T ss_pred CCCceEEEEcCCCCEEeecccCCCceeeecccccc
Confidence 456778999965 77777764 6789999876543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.10 E-value=1.6e-08 Score=70.86 Aligned_cols=62 Identities=3% Similarity=-0.037 Sum_probs=47.7
Q ss_pred EEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-c--EEEEecCCCcEEEEEecCCCCCC
Q psy2113 115 FVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-R--YIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 115 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
+++...++.+.+||..+++. +..+ .+...+..++|+|+ + ++++++.|++|++||+.+++...
T Consensus 291 ~~~~~~~~~v~~~d~~t~~~-~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~ 355 (373)
T d2madh_ 291 WKLHAAAKEVTSVTGLVGQT-SSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQ 355 (373)
T ss_pred EEeecCCCeEEEEECCCCcE-EEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEE
Confidence 34556677899999999875 4433 46678899999965 4 45688999999999999987643
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=5.3e-09 Score=72.03 Aligned_cols=123 Identities=9% Similarity=0.048 Sum_probs=85.3
Q ss_pred eccCCCeeEEEEccCCe-E-EEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC-CCeEE
Q psy2113 49 KGHKEAISAVQWTAVDE-I-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF-DNSVK 125 (183)
Q Consensus 49 ~~h~~~v~~~~~~~~~~-l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~ 125 (183)
..|.+.+..|+|+|+|+ | +++..|+.|++|++........ ......+...+..++|+| +++++++++. ++.+.
T Consensus 33 ~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~---~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~ 108 (333)
T d1ri6a_ 33 VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT---FAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVS 108 (333)
T ss_dssp EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE---EEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEE
T ss_pred EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE---EeeecccCCCceEEEEcC-CCCEEeecccCCCcee
Confidence 35888999999999987 5 4555689999999986543211 111223445577899999 7887777764 67899
Q ss_pred EEeCCCCCcc-eEEeccCCCcEEEEEecCC-cEEEEec-CCCcEEEEEecCCC
Q psy2113 126 LWDLRSPKVP-LFDMLGHEDKVMCVNWSDY-RYIMSGG-QDNSVRVFKTKHQP 175 (183)
Q Consensus 126 vwd~~~~~~~-~~~~~~~~~~v~~~~~~~~-~~l~~~~-~dg~i~iwd~~~~~ 175 (183)
+|+....... ......+...+.++.++++ .+++.++ .+..|.+|+.....
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~ 161 (333)
T d1ri6a_ 109 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG 161 (333)
T ss_dssp EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred eeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCC
Confidence 9988765431 2334456677888999966 5555554 45679999987654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.03 E-value=1.3e-08 Score=71.38 Aligned_cols=155 Identities=7% Similarity=-0.158 Sum_probs=99.0
Q ss_pred eeEEEEEeecCcEEEEEEeccCCC--CcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEe----------CCCeE
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSL--PSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSS----------WDHTL 75 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~----------~d~~v 75 (183)
...+.+++|+|..+.+.+...... .....+....+.+.++..+..+ .+.|+|+|+ +++++ .++.|
T Consensus 22 p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v 99 (373)
T d2madh_ 22 PTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYV 99 (373)
T ss_pred CccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEE
Confidence 356778999999987754211111 1111245677778787766544 799999987 55543 46789
Q ss_pred EEEEcCCCCCccCceeEEEeecCCcc-------eEEEEEecCCCCEEEEE--eCCCeEEEEeCCCCCcceEEeccCCCcE
Q psy2113 76 KIWDAELGGMKKGAIVKSTFSSHKEW-------VQSVRWSPIDPQLFVSA--SFDNSVKLWDLRSPKVPLFDMLGHEDKV 146 (183)
Q Consensus 76 ~vwd~~~~~~~~~~~~~~~~~~~~~~-------v~~~~~~p~~~~~l~~~--~~dg~i~vwd~~~~~~~~~~~~~~~~~v 146 (183)
.+||..+++. ...+..+... ...+.|+| ++..++.. ..++.+.+|+....+. ..+...+
T Consensus 100 ~v~D~~t~~~------~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~ 167 (373)
T d2madh_ 100 EVFDPVTFLP------IADIELPDAPRFDVGPYSWMNANTP-NNADLLFFQFAAGPAVGLVVQGGSSD-----DQLLSSP 167 (373)
T ss_pred EEEECCCCcE------EEEEecCCcceeEeccCCCcEEEEe-CCCcEEEEEEcCCCceEEeeccCCeE-----EEEeccc
Confidence 9999998775 3333333322 24577888 55544333 3356788888876543 2233345
Q ss_pred EEEEecCC--cEEEEecCCCcEEEEEecCCCCC
Q psy2113 147 MCVNWSDY--RYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 147 ~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
.++.++++ ..+++.+.|+.+.+||....+..
T Consensus 168 ~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~ 200 (373)
T d2madh_ 168 TCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG 200 (373)
T ss_pred eeEEEecCCCcEEEEEcCCCeEEEEEcCCceee
Confidence 67788854 56788999999999998766543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.95 E-value=5.4e-09 Score=75.98 Aligned_cols=150 Identities=12% Similarity=0.095 Sum_probs=99.2
Q ss_pred ceeceeEEEEEeecCcEEEEEE--eccCCCCcccccccCccceEEE-----eccCCCeeEEEEccCCe-EEEEe------
Q psy2113 5 KFGILTLGVIFMTVGALLTLTN--IEVTSLPSFFQLILQKTPLITL-----KGHKEAISAVQWTAVDE-IITSS------ 70 (183)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~-l~s~~------ 70 (183)
.|+....++.|.+++.++...+ +.+| +...++....+ ..|...|.++.|+|+++ |+.++
T Consensus 14 ~~~~~~~~~~W~~d~~~~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~ 86 (470)
T d2bgra1 14 TYRLKLYSLRWISDHEYLYKQENNILVF-------NAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW 86 (470)
T ss_dssp CSCCCCCCCEECSSSEEEEESSSCEEEE-------ETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred ceeccccCCEeCCCCEEEEEcCCcEEEE-------ECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCccee
Confidence 4555556677888887765543 3333 33344333333 34457899999999987 55543
Q ss_pred ---CCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEecc------
Q psy2113 71 ---WDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLG------ 141 (183)
Q Consensus 71 ---~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------ 141 (183)
.++.+.+||+.+++ ...+..+...+..+.|+| ++..++.. .++.+++|+..++.. ......
T Consensus 87 r~s~~~~~~l~d~~~~~-------~~~l~~~~~~~~~~~~SP-DG~~ia~~-~~~~l~~~~~~~g~~-~~~t~~~~~~~~ 156 (470)
T d2bgra1 87 RHSYTASYDIYDLNKRQ-------LITEERIPNNTQWVTWSP-VGHKLAYV-WNNDIYVKIEPNLPS-YRITWTGKEDII 156 (470)
T ss_dssp SSCEEEEEEEEETTTTE-------ECCSSCCCTTEEEEEECS-STTCEEEE-ETTEEEEESSTTSCC-EECCSCCBTTTE
T ss_pred eeccCceEEEEECCCCc-------ccccccCCcccccccccc-CcceeeEe-ecccceEEECCCCce-eeeeeccCCCcc
Confidence 35678999999876 345667888999999999 88888885 478999999988764 322211
Q ss_pred ------------CCCcEEEEEecCC-cEEEEecCCCc-EEEEEe
Q psy2113 142 ------------HEDKVMCVNWSDY-RYIMSGGQDNS-VRVFKT 171 (183)
Q Consensus 142 ------------~~~~v~~~~~~~~-~~l~~~~~dg~-i~iwd~ 171 (183)
..+....+.|+|+ ++|+....|.. +..|.+
T Consensus 157 ~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 157 YNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred cccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 1123455789976 78877665543 555544
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.95 E-value=2.5e-09 Score=74.53 Aligned_cols=119 Identities=10% Similarity=0.068 Sum_probs=79.0
Q ss_pred CCCeeEEEEc-cCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecC----------CcceEEEEEecCCCCEEEEEeC
Q psy2113 52 KEAISAVQWT-AVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSH----------KEWVQSVRWSPIDPQLFVSASF 120 (183)
Q Consensus 52 ~~~v~~~~~~-~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~----------~~~v~~~~~~p~~~~~l~~~~~ 120 (183)
...+....+. +++.++.++.++.+++|++..+.... ......+ ......++++| ++..++....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~-d~~~~~~~~~ 268 (355)
T d2bbkh_ 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF----LPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVD 268 (355)
T ss_dssp SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE----CCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEE
T ss_pred cceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEE----EeccCCcccceEeeeeeccceEEEEEeC-CCCeEEEEec
Confidence 3345555666 45668889999999999998765311 1111111 11234577888 6665555433
Q ss_pred C----------CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-c--EEEEecCCCcEEEEEecCCCCC
Q psy2113 121 D----------NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-R--YIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 121 d----------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+ ..|.+||..+++. +..+. +...+.+++|+|+ + +++++..|+.|++||+++++..
T Consensus 269 ~~~~~~~~~~~~~v~v~d~~t~~~-~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~ 336 (355)
T d2bbkh_ 269 QRDEWRHKTASRFVVVLDAKTGER-LAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL 336 (355)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCE-EEEEE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred cCCceeecCCCCeEEEEeCCCCcE-EEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEE
Confidence 2 3799999999875 44443 3456889999975 4 4567788999999999988754
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.82 E-value=1.6e-08 Score=73.37 Aligned_cols=115 Identities=19% Similarity=0.295 Sum_probs=85.6
Q ss_pred eEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeC---------CCeEEE
Q psy2113 56 SAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASF---------DNSVKL 126 (183)
Q Consensus 56 ~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~---------dg~i~v 126 (183)
..+.|.+++.++.- .++.+.+||+.+++... ......+..|...|.++.|+| +++.|+.++. ++.+.+
T Consensus 20 ~~~~W~~d~~~~~~-~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~i~~~~~Sp-Dg~~i~~~~~~~~~~r~s~~~~~~l 96 (470)
T d2bgra1 20 YSLRWISDHEYLYK-QENNILVFNAEYGNSSV-FLENSTFDEFGHSINDYSISP-DGQFILLEYNYVKQWRHSYTASYDI 96 (470)
T ss_dssp CCCEECSSSEEEEE-SSSCEEEEETTTCCEEE-EECTTTTTTSSSCCCEEEECT-TSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred cCCEeCCCCEEEEE-cCCcEEEEECCCCCEEE-EEchhhhhhccCccceeEECC-CCCEEEEEECCcceeeeccCceEEE
Confidence 45789988887654 57889999999877421 000112344567899999999 8888887743 567899
Q ss_pred EeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCCCC
Q psy2113 127 WDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 127 wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
||+.+++ ...+..+...+..+.|+|+ +.++. ..++.+.+|+...++.
T Consensus 97 ~d~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~-~~~~~l~~~~~~~g~~ 144 (470)
T d2bgra1 97 YDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAY-VWNNDIYVKIEPNLPS 144 (470)
T ss_dssp EETTTTE--ECCSSCCCTTEEEEEECSSTTCEEE-EETTEEEEESSTTSCC
T ss_pred EECCCCc--ccccccCCccccccccccCcceeeE-eecccceEEECCCCce
Confidence 9999876 4567788899999999976 66666 4678899999887754
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.75 E-value=4.3e-08 Score=68.89 Aligned_cols=53 Identities=0% Similarity=-0.068 Sum_probs=39.7
Q ss_pred eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-c--EEEEecCCCcEEEEEecCCCCC
Q psy2113 123 SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-R--YIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 123 ~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~--~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
.|.+||..+++. +..+. +...+..++|+|+ + .++++..|+.|++||..+++..
T Consensus 295 ~v~v~D~~t~~~-~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~ 350 (368)
T d1mdah_ 295 NTSSVTASVGQT-SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp EEEEEESSSCCE-EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred eEEEEECCCCcE-eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEE
Confidence 588999998875 44333 4457889999965 4 3467788999999999887654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.58 E-value=2.8e-07 Score=63.84 Aligned_cols=89 Identities=16% Similarity=0.134 Sum_probs=60.2
Q ss_pred eeEEEEccCCe-EEEEeC----------CCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCC--EEEEEeCC
Q psy2113 55 ISAVQWTAVDE-IITSSW----------DHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQ--LFVSASFD 121 (183)
Q Consensus 55 v~~~~~~~~~~-l~s~~~----------d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~--~l~~~~~d 121 (183)
...+++++++. ++.... ...+.+||..+.+. ...+. +...+.+++|+| +++ +++++..|
T Consensus 251 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~------~~~~~-~~~~~~~~a~sp-DG~~~l~v~~~~d 322 (355)
T d2bbkh_ 251 WQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER------LAKFE-MGHEIDSINVSQ-DEKPLLYALSTGD 322 (355)
T ss_dssp SSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE------EEEEE-EEEEECEEEECC-SSSCEEEEEETTT
T ss_pred eEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE------EEEec-CCCCEEEEEEcC-CCCeEEEEEECCC
Confidence 34577777655 333222 24799999988764 33333 345688999999 665 45677789
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEec
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS 152 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~ 152 (183)
+.|.+||.++++. +..+..+......+.+.
T Consensus 323 ~~i~v~D~~tg~~-~~~i~~~G~~p~~i~~~ 352 (355)
T d2bbkh_ 323 KTLYIHDAESGEE-LRSVNQLGHGPQVITTA 352 (355)
T ss_dssp TEEEEEETTTCCE-EEEECCCCSSCCEEECC
T ss_pred CEEEEEECCCCCE-EEEEeCcCCCccEEEeC
Confidence 9999999999986 66776665555555444
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.38 E-value=2.6e-06 Score=59.53 Aligned_cols=127 Identities=6% Similarity=-0.167 Sum_probs=82.9
Q ss_pred cccCccceEEEeccCCCeeEEEEccCCe-EEEE----------eCCCeEEEEEcCCCCCccCceeEEEeecCC-------
Q psy2113 38 LILQKTPLITLKGHKEAISAVQWTAVDE-IITS----------SWDHTLKIWDAELGGMKKGAIVKSTFSSHK------- 99 (183)
Q Consensus 38 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~----------~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~------- 99 (183)
+....+.+..+..+... .+.|+|+++ ++.. +.|+.|++||..+.+. ...+..+.
T Consensus 52 d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~------~~~i~~p~~~~~~~g 123 (368)
T d1mdah_ 52 CAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP------IADIELPDAPRFSVG 123 (368)
T ss_dssp ETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE------EEEEEETTSCSCCBS
T ss_pred eCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcE------eeeecCCccceeccc
Confidence 34566666777666554 688999987 5443 3467899999988765 33332221
Q ss_pred cceEEEEEecCCCCEEEEEe-CCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCCC
Q psy2113 100 EWVQSVRWSPIDPQLFVSAS-FDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 100 ~~v~~~~~~p~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 176 (183)
.....++|+| ++++++.+. .++.+.+||+.+.+. ......+.... +.......++..+.||.+.++++.....
T Consensus 124 ~~p~~~a~Sp-DGk~l~va~~~~~~v~~~d~~~~~~-~~~~~~~~~~~--~~~~~~~~~v~~~~Dg~~~~~~~~~~~~ 197 (368)
T d1mdah_ 124 PRVHIIGNCA-SSACLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFH--IHPGAAATHYLGSCPASLAASDLAAAPA 197 (368)
T ss_dssp CCTTSEEECT-TSSCEEEEECSSSCEEEEEETTTEE-EEEEECSSCCC--CEEEETTEEECCCCTTSCEEEECCSSCC
T ss_pred CCccceEECC-CCCEEEEEeCCCCeEEEEECCCCcE-eEEeeccCcce--EccCCCceEEEEcCCCCEEEEEecCCce
Confidence 2234689999 777666654 578999999999875 44444443322 1112336777788899988888776544
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.35 E-value=0.00011 Score=50.18 Aligned_cols=121 Identities=11% Similarity=0.133 Sum_probs=80.6
Q ss_pred CeeEEEEccCC-----e-EEEEeCCCeEEEEEcCCCCCccCceeEEEeec-CCcceEEEEEecCCCCEEEEEeCCCeEEE
Q psy2113 54 AISAVQWTAVD-----E-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSS-HKEWVQSVRWSPIDPQLFVSASFDNSVKL 126 (183)
Q Consensus 54 ~v~~~~~~~~~-----~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~p~~~~~l~~~~~dg~i~v 126 (183)
.-+.++|++++ . +++-+..+.|..||+..............+.. .....-.+++.+ +++++++....+.|.+
T Consensus 173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~-~GnlyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDE-DNNLLVANWGSSHIEV 251 (314)
T ss_dssp SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBT-TCCEEEEEETTTEEEE
T ss_pred eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEec-CCcEEEEEcCCCEEEE
Confidence 34688898653 2 45557788999998764332111111111111 223356789998 8888888888899999
Q ss_pred EeCCCCCcceEEeccCCCcEEEEEecCC-c-EEEEecCCCcEEEEEecCCCC
Q psy2113 127 WDLRSPKVPLFDMLGHEDKVMCVNWSDY-R-YIMSGGQDNSVRVFKTKHQPK 176 (183)
Q Consensus 127 wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~~~ 176 (183)
||.+.+.. ...+......+++++|.++ + .+++.+.+|.|.-.++....+
T Consensus 252 ~dp~~g~~-~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~ 302 (314)
T d1pjxa_ 252 FGPDGGQP-KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK 302 (314)
T ss_dssp ECTTCBSC-SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred EeCCCCEE-EEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence 99987764 4455555567899999965 3 667778889898888765543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.33 E-value=0.00012 Score=49.58 Aligned_cols=158 Identities=9% Similarity=0.027 Sum_probs=102.0
Q ss_pred eeEEEEEeecCcEEEEEE--eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTN--IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGM 85 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~ 85 (183)
...++++.|+|.++.+.. -+++.+ ........+......+.+++|.+++. +++...++.+..++......
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i-------~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~ 101 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSI-------TPDGNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG 101 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEE-------CTTCCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEE-------eCCCCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence 466899999999876543 112211 11122344555667899999998877 55666778888887755332
Q ss_pred ccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec---------cCCCcEEEEEecCCcE
Q psy2113 86 KKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML---------GHEDKVMCVNWSDYRY 156 (183)
Q Consensus 86 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~ 156 (183)
.. . .............+.+.+ +++++++-+.++.+..+|.......+.... .....+..+.+..+..
T Consensus 102 ~~--~-~~~~~~~~~~~n~i~~~~-~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~~l 177 (302)
T d2p4oa1 102 TV--E-TLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFL 177 (302)
T ss_dssp CE--E-EEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEE
T ss_pred ce--e-eccccCCccccceeEEcc-CCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCCce
Confidence 11 0 111123445678999999 888888888889999998887642111111 1123457777777677
Q ss_pred EEEecCCCcEEEEEecCCCCC
Q psy2113 157 IMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 157 l~~~~~dg~i~iwd~~~~~~~ 177 (183)
+++.+.++.|..+++......
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~~ 198 (302)
T d2p4oa1 178 YVSNTEKMLLLRIPVDSTDKP 198 (302)
T ss_dssp EEEETTTTEEEEEEBCTTSCB
T ss_pred eeecCCCCeEEeccccccccc
Confidence 788888999999888765433
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.29 E-value=4.8e-05 Score=53.20 Aligned_cols=163 Identities=8% Similarity=0.011 Sum_probs=93.4
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccc-cCccceEEEe--ccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLI-LQKTPLITLK--GHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~ 84 (183)
..+++|+|+|+.+.+.+...-.+..+.... .......... ......+.+.|+|+++ +++.-.+++|.+|+.....
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~ 226 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCC
Confidence 468999999999888773322222211111 1111122222 2345678999999887 4566778999999987654
Q ss_pred CccCceeEEEee--------------cCCcceEEEEEecCCCCEEEEEeC------CCeEEEEeCCCCCcceE-----Ee
Q psy2113 85 MKKGAIVKSTFS--------------SHKEWVQSVRWSPIDPQLFVSASF------DNSVKLWDLRSPKVPLF-----DM 139 (183)
Q Consensus 85 ~~~~~~~~~~~~--------------~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~vwd~~~~~~~~~-----~~ 139 (183)
.... ....... .+......+.++| ++++++++.. .+.|..|++........ ..
T Consensus 227 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp-dG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~ 304 (365)
T d1jofa_ 227 HMPV-YTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF-SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT 304 (365)
T ss_dssp CCEE-EEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT-TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred ceEE-EEeeeeccccccccccccccccccCCccceEECC-CCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEE
Confidence 3210 0011110 1123456789999 7777766532 23477777765432111 11
Q ss_pred ccCCCcEEEEEecC--CcEEEE-ecCCCcEEEEEecCC
Q psy2113 140 LGHEDKVMCVNWSD--YRYIMS-GGQDNSVRVFKTKHQ 174 (183)
Q Consensus 140 ~~~~~~v~~~~~~~--~~~l~~-~~~dg~i~iwd~~~~ 174 (183)
.........++++| +++|++ ...++.|.+|+++..
T Consensus 305 ~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 12234557788885 465654 467899999987654
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.23 E-value=7.2e-05 Score=50.77 Aligned_cols=112 Identities=6% Similarity=0.042 Sum_probs=80.0
Q ss_pred CeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCC
Q psy2113 54 AISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSP 132 (183)
Q Consensus 54 ~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~ 132 (183)
.+..+++.|+|. +++...+++|+.++.... ...+......+.++++.| +++++++...++.+..++....
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--------~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~ 99 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN--------QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKS 99 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC--------EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECT
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--------EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccc
Confidence 578999999988 556667888888875532 223445667899999999 8889998888888888877654
Q ss_pred CcceEEec--cCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 133 KVPLFDML--GHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 133 ~~~~~~~~--~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
......+. ......+.+.+.++ .++++.+.++.+..+|....
T Consensus 100 ~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 100 DGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp TSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred ccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence 33233322 33456789999865 66677777888877776654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.02 E-value=0.00059 Score=45.57 Aligned_cols=152 Identities=11% Similarity=0.146 Sum_probs=94.7
Q ss_pred EEEEEeecCcEEEEEEeccCCCCcccccccCccceEEE--eccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCcc
Q psy2113 11 LGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITL--KGHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~ 87 (183)
.++++.+++.++....-. ..+ .......+.+..+ ..+......+++.+++. +++....+.|++||.....
T Consensus 117 ~~~avd~~G~i~v~~~~~-~~~---~~~~~~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~--- 189 (279)
T d1q7fa_ 117 RGVTVDNKGRIIVVECKV-MRV---IIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY--- 189 (279)
T ss_dssp EEEEECTTSCEEEEETTT-TEE---EEECTTSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE---
T ss_pred ceeccccCCcEEEEeecc-cee---eEeccCCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCce---
Confidence 456677777665553210 000 0011233344444 23455677888888776 5566778899999975432
Q ss_pred CceeEEEe--ecCCcceEEEEEecCCCCEEEEEeC-CCeEEEEeCCCCCcceEEec--cCCCcEEEEEecCCcEEEEecC
Q psy2113 88 GAIVKSTF--SSHKEWVQSVRWSPIDPQLFVSASF-DNSVKLWDLRSPKVPLFDML--GHEDKVMCVNWSDYRYIMSGGQ 162 (183)
Q Consensus 88 ~~~~~~~~--~~~~~~v~~~~~~p~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~l~~~~~ 162 (183)
...+ .+.......+++.| +++++++-.. ++.|.+++. +++. +..+. ........|++.++..|++...
T Consensus 190 ----~~~~g~~g~~~~P~giavD~-~G~i~Vad~~~~~~v~~f~~-~G~~-~~~~~~~~~~~~p~~vav~~dG~l~V~~~ 262 (279)
T d1q7fa_ 190 ----LRQIGGEGITNYPIGVGINS-NGEILIADNHNNFNLTIFTQ-DGQL-ISALESKVKHAQCFDVALMDDGSVVLASK 262 (279)
T ss_dssp ----EEEESCTTTSCSEEEEEECT-TCCEEEEECSSSCEEEEECT-TSCE-EEEEEESSCCSCEEEEEEETTTEEEEEET
T ss_pred ----eeeecccccccCCccccccc-CCeEEEEECCCCcEEEEECC-CCCE-EEEEeCCCCCCCEeEEEEeCCCcEEEEeC
Confidence 2233 23445578999999 7887777543 457999985 4543 33332 2234678899997766777778
Q ss_pred CCcEEEEEecCCCC
Q psy2113 163 DNSVRVFKTKHQPK 176 (183)
Q Consensus 163 dg~i~iwd~~~~~~ 176 (183)
+..|++|...+...
T Consensus 263 n~~v~~fr~~~~~~ 276 (279)
T d1q7fa_ 263 DYRLYIYRYVQLAP 276 (279)
T ss_dssp TTEEEEEECSCCCC
T ss_pred CCeEEEEEeeeecC
Confidence 99999999877654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.96 E-value=0.00031 Score=50.17 Aligned_cols=148 Identities=11% Similarity=0.013 Sum_probs=85.8
Q ss_pred EeecCcEEEEEEeccCCCCcccccccCccceEEEe-ccCCCeeEEEEccCCe--EEEEeCCCeE----------------
Q psy2113 15 FMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLK-GHKEAISAVQWTAVDE--IITSSWDHTL---------------- 75 (183)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--l~s~~~d~~v---------------- 75 (183)
+.|||+++.+.+...-.+... +....+....+. .+......++|+|+++ ++++..+..+
T Consensus 79 gtpDGr~lfV~d~~~~rVavI--Dl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~ 156 (441)
T d1qnia2 79 GRYDGKYLFINDKANTRVARI--RLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYT 156 (441)
T ss_dssp TEEEEEEEEEEETTTTEEEEE--ETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEE
T ss_pred ccCCCCEEEEEcCCCCEEEEE--ECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccc
Confidence 578999887776221111111 233444444443 3567889999998876 5555444333
Q ss_pred --EEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC--------------------------------
Q psy2113 76 --KIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-------------------------------- 121 (183)
Q Consensus 76 --~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-------------------------------- 121 (183)
..+|..+.+. ..++.. ......+.++| ++.++++.+.+
T Consensus 157 ~~~~iD~~t~~v------~~qI~v-~~~p~~v~~sp-dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~d 228 (441)
T d1qnia2 157 MFTAIDAETMDV------AWQVIV-DGNLDNTDADY-TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKA 228 (441)
T ss_dssp EEEEEETTTCSE------EEEEEE-SSCCCCEEECS-SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHT
T ss_pred eEEeecCcccee------eEEEec-CCCccceEECC-CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecC
Confidence 3456555432 223322 23567888999 67766665533
Q ss_pred ---------CeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEE-EEecCCCcEEEEEecCC
Q psy2113 122 ---------NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYI-MSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 122 ---------g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l-~~~~~dg~i~iwd~~~~ 174 (183)
+.+.+++...... +..+.... ....+.++|+ +++ +++..+++|.+||+++.
T Consensus 229 Gk~~~v~~~~v~vvd~~~~~~v-~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~ 290 (441)
T d1qnia2 229 GNFKTIGDSKVPVVDGRGESEF-TRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL 290 (441)
T ss_dssp TCCBCCTTCCCCEEECSSSCSS-EEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGGH
T ss_pred CCEEEeCCCCcEEEEcccCCce-EEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeehh
Confidence 2334444333332 44454443 3577889966 655 66788999999998763
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.86 E-value=0.0011 Score=43.66 Aligned_cols=151 Identities=10% Similarity=-0.006 Sum_probs=89.8
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEe-ccCCCeeEEEEccCCe-EEEEeCCCeEEEEEcCCCCCcc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLK-GHKEAISAVQWTAVDE-IITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~-l~s~~~d~~v~vwd~~~~~~~~ 87 (183)
..++++.+++.++.... .......+ ........... .......++++.+++. +++...++.+..+|......
T Consensus 100 p~~iavd~~g~i~v~d~-~~~~~~~~---~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~-- 173 (260)
T d1rwia_ 100 PEGLAVDTQGAVYVADR-GNNRVVKL---AAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ-- 173 (260)
T ss_dssp EEEEEECTTCCEEEEEG-GGTEEEEE---CTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCE--
T ss_pred cccccccccceeEeecc-cccccccc---ccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccccccee--
Confidence 46788888887765432 11111000 00111111111 1223457888888766 55667778899998775442
Q ss_pred CceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCCCcE
Q psy2113 88 GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQDNSV 166 (183)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~dg~i 166 (183)
.......-.....+++.+ +++++++....+.|..++...... .......-.....|+++++ .++++-..++.|
T Consensus 174 ----~~~~~~~~~~p~gi~~d~-~g~l~vsd~~~~~i~~~~~~~~~~-~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI 247 (260)
T d1rwia_ 174 ----VVLPFTDITAPWGIAVDE-AGTVYVTEHNTNQVVKLLAGSTTS-TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 247 (260)
T ss_dssp ----EECCCSSCCSEEEEEECT-TCCEEEEETTTTEEEEECTTCSCC-EECCCCSCCCEEEEEECTTCCEEEEEGGGTEE
T ss_pred ----eeeeccccCCCccceeee-eeeeeeeecCCCEEEEEeCCCCeE-EEEccCCCCCeEEEEEeCCCCEEEEECCCCEE
Confidence 111123445678999999 788888888888898888765442 2222233356789999954 666666667777
Q ss_pred EEEEec
Q psy2113 167 RVFKTK 172 (183)
Q Consensus 167 ~iwd~~ 172 (183)
+.++..
T Consensus 248 ~~i~~~ 253 (260)
T d1rwia_ 248 VKLTSL 253 (260)
T ss_dssp EEECCC
T ss_pred EEEeCC
Confidence 766544
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.73 E-value=8.5e-06 Score=58.38 Aligned_cols=152 Identities=7% Similarity=-0.098 Sum_probs=88.5
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGA 89 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~ 89 (183)
...++|+|+|.++.+.+......... ..........+.... .-..+.+.++|+.+..+.++.+.+++....+.
T Consensus 178 p~~v~~spdGk~a~vt~~nse~~~~i--d~~t~~~~d~i~v~n-~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v---- 250 (441)
T d1qnia2 178 LDNTDADYTGKYATSTCYNSERAVDL--AGTMRNDRDWVVVFN-VERIAAAVKAGNFKTIGDSKVPVVDGRGESEF---- 250 (441)
T ss_dssp CCCEEECSSSSEEEEEESCTTCCSSH--HHHTCSSBCEEEEEE-HHHHHHHHHTTCCBCCTTCCCCEEECSSSCSS----
T ss_pred ccceEECCCCCEEEEEecCCCceEEE--eccCcceEEEEEeCC-ccceEEEecCCCEEEeCCCCcEEEEcccCCce----
Confidence 44688999999888776432222111 111111111111111 11223445778766666678888887655443
Q ss_pred eeEEEeecCCcceEEEEEecCCCCE-EEEEeCCCeEEEEeCCCCCc----------ceEEeccCCCcEEEEEecCC-cEE
Q psy2113 90 IVKSTFSSHKEWVQSVRWSPIDPQL-FVSASFDNSVKLWDLRSPKV----------PLFDMLGHEDKVMCVNWSDY-RYI 157 (183)
Q Consensus 90 ~~~~~~~~~~~~v~~~~~~p~~~~~-l~~~~~dg~i~vwd~~~~~~----------~~~~~~~~~~~v~~~~~~~~-~~l 157 (183)
...+... ...+.+.++| ++++ ++++..++++.|||+++... .+.-.....-......|.+. ..+
T Consensus 251 --~~~IPvg-ksPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~y 326 (441)
T d1qnia2 251 --TRYIPVP-KNPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAY 326 (441)
T ss_dssp --EEEECCB-SSCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEE
T ss_pred --EEEEeCC-CCccCceECC-CCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEE
Confidence 3444443 4468899999 6665 56778899999999865221 01111111112355678865 566
Q ss_pred EEecCCCcEEEEEec
Q psy2113 158 MSGGQDNSVRVFKTK 172 (183)
Q Consensus 158 ~~~~~dg~i~iwd~~ 172 (183)
.+...|.+|..|++.
T Consensus 327 ts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 327 TTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEETTTTEEEEEEHH
T ss_pred EcccccceEEEeccc
Confidence 777889999999975
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.69 E-value=0.0028 Score=43.06 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=84.7
Q ss_pred eeEEEEEeecCcEEEEEEeccC--CCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVT--SLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~ 84 (183)
....+++.++|.+......... ..............+..+...-..-+.++|++++. +++-+..+.|+.|++....
T Consensus 131 ~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g 210 (319)
T d2dg1a1 131 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDG 210 (319)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCC
Confidence 3567888999986654321111 01011111112333333333444567899998864 4566778999999987543
Q ss_pred CccCceeE--EEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEec------cCCCcEEEEEecCC-c
Q psy2113 85 MKKGAIVK--STFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDML------GHEDKVMCVNWSDY-R 155 (183)
Q Consensus 85 ~~~~~~~~--~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~------~~~~~v~~~~~~~~-~ 155 (183)
........ ..........-.+++.+ ++++.++....+.|.++|. +++. +..+. ++...+++++|.++ .
T Consensus 211 ~~~~~~~~~~~~~~~~~~~PdGl~vD~-~G~l~Va~~~~g~V~~~~p-~G~~-l~~i~~P~~~~~~~~~~~~~~~~~~~~ 287 (319)
T d2dg1a1 211 VTIQPFGATIPYYFTGHEGPDSCCIDS-DDNLYVAMYGQGRVLVFNK-RGYP-IGQILIPGRDEGHMLRSTHPQFIPGTN 287 (319)
T ss_dssp SSEEEEEEEEEEECCSSSEEEEEEEBT-TCCEEEEEETTTEEEEECT-TSCE-EEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred ceeccccceeeeccCCccceeeeeEcC-CCCEEEEEcCCCEEEEECC-CCcE-EEEEeCCCcCCCcCceeeeEEEeCCCC
Confidence 21110001 11111223356799999 8888888888999999996 4554 33332 23346789999865 4
Q ss_pred EEEE
Q psy2113 156 YIMS 159 (183)
Q Consensus 156 ~l~~ 159 (183)
.+++
T Consensus 288 ~~~~ 291 (319)
T d2dg1a1 288 QLII 291 (319)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.66 E-value=0.0026 Score=41.86 Aligned_cols=149 Identities=7% Similarity=-0.015 Sum_probs=88.9
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEE-EEeCCCeEEEEEcCCCC
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEII-TSSWDHTLKIWDAELGG 84 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~-s~~~d~~v~vwd~~~~~ 84 (183)
..++++++++.++.+.. +... .......+... .......++++.+++.++ +-..+..+..++.....
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~-------~~~~~~~~~~~-~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~ 130 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLA-------AGSNNQTVLPF-DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKT 130 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEEC-------TTCSCCEECCC-CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSS
T ss_pred ceEEEEcCCCCEEEeeeeeceeeee-------eeccceeeeee-eeeeecccccccccceeEeeccccccccccccccce
Confidence 35678888887655432 1111 11111111111 123456889998877654 44455667777665433
Q ss_pred CccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecCC
Q psy2113 85 MKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQD 163 (183)
Q Consensus 85 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~d 163 (183)
. .............++++| +++++++...++.|..+|...... .............+++.++ .++++....
T Consensus 131 ~------~~~~~~~~~~p~~i~~~~-~g~~~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~ 202 (260)
T d1rwia_ 131 Q------TVLPFTGLNDPDGVAVDN-SGNVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNT 202 (260)
T ss_dssp C------EECCCCSCCSCCEEEECT-TCCEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTT
T ss_pred e------eeeeecccCCcceeeecC-CCCEeeecccccccccccccccee-eeeeccccCCCccceeeeeeeeeeeecCC
Confidence 2 111111223457889999 788888888888999999876543 2222344566788999855 677777777
Q ss_pred CcEEEEEecCC
Q psy2113 164 NSVRVFKTKHQ 174 (183)
Q Consensus 164 g~i~iwd~~~~ 174 (183)
+.|..++....
T Consensus 203 ~~i~~~~~~~~ 213 (260)
T d1rwia_ 203 NQVVKLLAGST 213 (260)
T ss_dssp TEEEEECTTCS
T ss_pred CEEEEEeCCCC
Confidence 88888876543
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.53 E-value=0.0049 Score=41.82 Aligned_cols=157 Identities=9% Similarity=0.046 Sum_probs=87.8
Q ss_pred eceeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeC-----CCeEEEEEcC
Q psy2113 7 GILTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSW-----DHTLKIWDAE 81 (183)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~-----d~~v~vwd~~ 81 (183)
+....+++|.++|.++.+ ++....+..+ +.........+.........+++.+++.|+.+.. .+.+...+..
T Consensus 39 ~~~lEG~~~D~~G~Ly~~-D~~~g~I~ri--~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~ 115 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQLFLL-DVFEGNIFKI--NPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATEN 115 (319)
T ss_dssp CCCEEEEEECTTSCEEEE-ETTTCEEEEE--CTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTT
T ss_pred CcCcEeCEECCCCCEEEE-ECCCCEEEEE--ECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCC
Confidence 444579999999985554 3221211111 1122222333344555678999999888665532 2334444444
Q ss_pred CCCCccCceeEEEee--cCCcceEEEEEecCCCCEEEEEeC------CCeEEEEeCCCCCcceEEeccCCCcEEEEEecC
Q psy2113 82 LGGMKKGAIVKSTFS--SHKEWVQSVRWSPIDPQLFVSASF------DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD 153 (183)
Q Consensus 82 ~~~~~~~~~~~~~~~--~~~~~v~~~~~~p~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~ 153 (183)
.... ..... .-......+.+.| ++++.++... .+.+..++..... +......-...+.++|++
T Consensus 116 ~~~~------~~~~~~~~~~~~~nd~~~d~-~G~l~vtd~~~~~~~~~g~v~~~~~dg~~--~~~~~~~~~~pnGia~s~ 186 (319)
T d2dg1a1 116 GDNL------QDIIEDLSTAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVYYVSPDFRT--VTPIIQNISVANGIALST 186 (319)
T ss_dssp SCSC------EEEECSSSSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEEEECTTSCC--EEEEEEEESSEEEEEECT
T ss_pred Ccee------eeeccCCCcccCCcceeEEe-ccceeecccccccccCcceeEEEecccce--eEEEeeccceeeeeeecc
Confidence 3332 11111 1123477899999 7887776432 2345555554332 333333334568899996
Q ss_pred C-c-EEEEecCCCcEEEEEecCCC
Q psy2113 154 Y-R-YIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 154 ~-~-~l~~~~~dg~i~iwd~~~~~ 175 (183)
+ + +.++-+..+.|..||+....
T Consensus 187 dg~~lyvad~~~~~I~~~d~~~~g 210 (319)
T d2dg1a1 187 DEKVLWVTETTANRLHRIALEDDG 210 (319)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred ccceEEEecccCCceEEEEEcCCC
Confidence 5 5 44666778899999987543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.0053 Score=40.03 Aligned_cols=155 Identities=9% Similarity=0.082 Sum_probs=84.8
Q ss_pred EEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEE-EeCCCeEEEEEcCCCCCccC
Q psy2113 11 LGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IIT-SSWDHTLKIWDAELGGMKKG 88 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s-~~~d~~v~vwd~~~~~~~~~ 88 (183)
.+-+|||||..++...........+. ..........+..+.+......|+|++. ++. ...++...++........
T Consensus 42 ~sP~wSPDGk~IAf~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~-- 118 (269)
T d2hqsa1 42 MSPAWSPDGSKLAYVTFESGRSALVI-QTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-- 118 (269)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEE-EETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--
T ss_pred eeeEECCCCCEEEEEEeeccCcceee-eecccCceeEEeeeecccccceecCCCCeeeEeeecCCccceeeccccccc--
Confidence 46789999999998653322211111 1223334455666788888999999887 433 223333333332222211
Q ss_pred ceeEEEeecCCcceEEEEEecCCCCEEEEEeCCC--eEEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEE-ecCCC
Q psy2113 89 AIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDN--SVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMS-GGQDN 164 (183)
Q Consensus 89 ~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~-~~~dg 164 (183)
...............+++.....+++...++ .|.+.+..... ...............|+++ ..++. ....+
T Consensus 119 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~ 193 (269)
T d2hqsa1 119 ---IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWEGSQNQDADVSSDGKFMVMVSSNGG 193 (269)
T ss_dssp ---EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCSSSEEEEEEECTTSSEEEEEEECSS
T ss_pred ---ceeeeeccccccccccccccccceecccccCCceEeeeeccccc--ceeeecccccccccccccccceeEEEeecCC
Confidence 2223334444455566773444555555555 45666666654 3445556667778889965 55544 44455
Q ss_pred cEEEEEecC
Q psy2113 165 SVRVFKTKH 173 (183)
Q Consensus 165 ~i~iwd~~~ 173 (183)
...+|....
T Consensus 194 ~~~i~~~~~ 202 (269)
T d2hqsa1 194 QQHIAKQDL 202 (269)
T ss_dssp CEEEEEEET
T ss_pred ceeeeEeec
Confidence 555555443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.42 E-value=0.0068 Score=40.66 Aligned_cols=151 Identities=9% Similarity=-0.032 Sum_probs=89.1
Q ss_pred ceeEEEEEeecCcEEEEEEeccCCCCc-ccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCeEEEEEcCCCC
Q psy2113 8 ILTLGVIFMTVGALLTLTNIEVTSLPS-FFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHTLKIWDAELGG 84 (183)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~v~vwd~~~~~ 84 (183)
....++.+.|+|.+............. ........+. ..+......-+.+.|++++. +++-+..+.|..+++....
T Consensus 103 ~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~-~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~ 181 (295)
T d2ghsa1 103 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART 181 (295)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred ccceeeEECCCCCEEEEeccccccccceeEeeecCCcE-EEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccc
Confidence 346677888888876654322111110 0001112222 22323334567899998765 5677788999999875432
Q ss_pred Cc--cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CC--cEEEE
Q psy2113 85 MK--KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DY--RYIMS 159 (183)
Q Consensus 85 ~~--~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~--~~l~~ 159 (183)
.. ..........+..+..-.+++.. ++++.++.-..+.|..||.. ++. +..+.-....+++++|- ++ .+++|
T Consensus 182 ~~~~~~~~~~~~~~~~~g~pdG~~vD~-~GnlWva~~~~g~V~~~dp~-G~~-~~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 182 GLPTGKAEVFIDSTGIKGGMDGSVCDA-EGHIWNARWGEGAVDRYDTD-GNH-IARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp CCBSSCCEEEEECTTSSSEEEEEEECT-TSCEEEEEETTTEEEEECTT-CCE-EEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred cccccceEEEeccCcccccccceEEcC-CCCEEeeeeCCCceEEecCC-CcE-eeEecCCCCceEEEEEeCCCCCEEEEE
Confidence 21 11111222334455678889988 88888887778899999964 554 55555444678999997 44 45555
Q ss_pred ecC
Q psy2113 160 GGQ 162 (183)
Q Consensus 160 ~~~ 162 (183)
...
T Consensus 259 ta~ 261 (295)
T d2ghsa1 259 SAR 261 (295)
T ss_dssp EBC
T ss_pred ECC
Confidence 443
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.35 E-value=0.0071 Score=39.40 Aligned_cols=153 Identities=12% Similarity=0.094 Sum_probs=81.6
Q ss_pred EEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe--EEEEeCCCe--EEEEEcCCCCCc
Q psy2113 11 LGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE--IITSSWDHT--LKIWDAELGGMK 86 (183)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~~~d~~--v~vwd~~~~~~~ 86 (183)
....|+|+|..++............. ......................+++.+. +++...++. +.+.++....
T Consensus 86 ~~~~~spdg~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-- 162 (269)
T d2hqsa1 86 GAPAFSPDGSKLAFALSKTGSLNLYV-MDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-- 162 (269)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEE-EETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--
T ss_pred ccceecCCCCeeeEeeecCCccceee-cccccccceeeeeccccccccccccccccceecccccCCceEeeeeccccc--
Confidence 45679999998887553221111111 1111122222233334444555665443 455555554 4444544433
Q ss_pred cCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-Ce--EEEEeCCCCCcceEEeccCCCcEEEEEecCC-cEEEEecC
Q psy2113 87 KGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-NS--VKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIMSGGQ 162 (183)
Q Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~--i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~~~~~ 162 (183)
...+...........|+| ++..++..+.+ +. +.+.|..... . .............|+|+ +.|+-.+.
T Consensus 163 -----~~~~~~~~~~~~~~~~sp-dg~~~~~~~~~~~~~~i~~~~~~~~~--~-~~~~~~~~~~~p~~SPDG~~i~f~s~ 233 (269)
T d2hqsa1 163 -----PQRITWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGG--V-QVLSSTFLDETPSLAPNGTMVIYSSS 233 (269)
T ss_dssp -----CEECCCSSSEEEEEEECT-TSSEEEEEEECSSCEEEEEEETTTCC--E-EECCCSSSCEEEEECTTSSEEEEEEE
T ss_pred -----ceeeeccccccccccccc-ccceeEEEeecCCceeeeEeeccccc--c-eEeecCccccceEECCCCCEEEEEEc
Confidence 223444566777889999 67666665544 44 4444554443 2 33345556678899976 65543332
Q ss_pred ---CCcEEEEEecCCC
Q psy2113 163 ---DNSVRVFKTKHQP 175 (183)
Q Consensus 163 ---dg~i~iwd~~~~~ 175 (183)
...|.++++....
T Consensus 234 ~~~~~~l~~~~~dg~~ 249 (269)
T d2hqsa1 234 QGMGSVLNLVSTDGRF 249 (269)
T ss_dssp ETTEEEEEEEETTSCC
T ss_pred CCCCcEEEEEECCCCC
Confidence 3468888887654
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.20 E-value=0.0063 Score=41.24 Aligned_cols=70 Identities=11% Similarity=0.258 Sum_probs=51.1
Q ss_pred eeEEEEccCCeE-EEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCC-CEEEEEeCCCeEEEEeCCC
Q psy2113 55 ISAVQWTAVDEI-ITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDP-QLFVSASFDNSVKLWDLRS 131 (183)
Q Consensus 55 v~~~~~~~~~~l-~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~-~~l~~~~~dg~i~vwd~~~ 131 (183)
.-.+++..+|.| ++....+.|.+||.+.+.. ...+.......++++|.| ++ .++++.+.++.|...++..
T Consensus 228 pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~------~~~i~~p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 228 ADGMDFDEDNNLLVANWGSSHIEVFGPDGGQP------KMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEEBTTCCEEEEEETTTEEEEECTTCBSC------SEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSS
T ss_pred ceeeEEecCCcEEEEEcCCCEEEEEeCCCCEE------EEEEECCCCCEEEEEEeC-CCCEEEEEECCCCcEEEEECCC
Confidence 457888877774 5666788999999876554 334444556789999999 55 4778877888888888753
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.16 E-value=0.017 Score=39.86 Aligned_cols=120 Identities=8% Similarity=0.041 Sum_probs=70.4
Q ss_pred CCeeEEEEccCCe-EEEE-eCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEE-EEEeCCCeEEEEeC
Q psy2113 53 EAISAVQWTAVDE-IITS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLF-VSASFDNSVKLWDL 129 (183)
Q Consensus 53 ~~v~~~~~~~~~~-l~s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l-~~~~~dg~i~vwd~ 129 (183)
..+.++.|+|+++ ++++ .....|.+|+........... .............+.|+| +++++ ++.-.++.|.+|+.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~-~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG-SVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE-EEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc-ceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEe
Confidence 3478999999987 4444 345688888865433211000 111122345688999999 66655 55556889999999
Q ss_pred CCCCcce-EEec-----------------cCCCcEEEEEecCC-cEEEEecC------CCcEEEEEecCC
Q psy2113 130 RSPKVPL-FDML-----------------GHEDKVMCVNWSDY-RYIMSGGQ------DNSVRVFKTKHQ 174 (183)
Q Consensus 130 ~~~~~~~-~~~~-----------------~~~~~v~~~~~~~~-~~l~~~~~------dg~i~iwd~~~~ 174 (183)
....... .... .+......+.++|+ ++++++.. .+.|..|++...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~ 292 (365)
T d1jofa_ 223 DPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp CTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred cCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCC
Confidence 7654311 1110 11123567888865 77766533 223777776543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=96.61 E-value=0.039 Score=35.77 Aligned_cols=89 Identities=11% Similarity=0.063 Sum_probs=54.5
Q ss_pred ccC--CeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe-CC-----CeEEEEeCCCC
Q psy2113 61 TAV--DEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS-FD-----NSVKLWDLRSP 132 (183)
Q Consensus 61 ~~~--~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~d-----g~i~vwd~~~~ 132 (183)
+|+ |..++=..++.|.+.|+..++ ...+..+.+.+...+|+| +++.|+-.. .+ ..|.+++..++
T Consensus 7 sPdi~G~~v~f~~~~dl~~~d~~~g~-------~~~Lt~~~~~~~~p~~SP-DG~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 7 NPDIHGDRIIFVCCDDLWEHDLKSGS-------TRKIVSNLGVINNARFFP-DGRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp EEEEETTEEEEEETTEEEEEETTTCC-------EEEEECSSSEEEEEEECT-TSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred CCCCCCCEEEEEeCCcEEEEECCCCC-------EEEEecCCCcccCEEECC-CCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence 455 553333345678888998766 345667778889999999 777776443 22 24777777766
Q ss_pred CcceEEeccC-------CCcEEEEEecCC-cEEEE
Q psy2113 133 KVPLFDMLGH-------EDKVMCVNWSDY-RYIMS 159 (183)
Q Consensus 133 ~~~~~~~~~~-------~~~v~~~~~~~~-~~l~~ 159 (183)
.. ..+... ........|+|+ +.++.
T Consensus 79 ~~--~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~ 111 (281)
T d1k32a2 79 EI--KRITYFSGKSTGRRMFTDVAGFDPDGNLIIS 111 (281)
T ss_dssp EE--EECCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred ce--EEeeecCCCccCccccccccccCCCCCEEEE
Confidence 53 222211 123456778865 55544
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.00 E-value=0.028 Score=40.18 Aligned_cols=113 Identities=13% Similarity=0.136 Sum_probs=66.7
Q ss_pred CeeEEEEccCCe-EEEE---------eCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCe
Q psy2113 54 AISAVQWTAVDE-IITS---------SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNS 123 (183)
Q Consensus 54 ~v~~~~~~~~~~-l~s~---------~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~ 123 (183)
.+....|+|+++ ++.. +..+.+.++|+.++.... +.........+....|+| ++..++-.. ++.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~----l~~~~~~~~~l~~~~wSP-DG~~iafv~-~~n 135 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS----LDPPEVSNAKLQYAGWGP-KGQQLIFIF-ENN 135 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEE----CCCTTCCSCCCSBCCBCS-STTCEEEEE-TTE
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceee----ccCccCCccccceeeecc-CCceEEEEe-cce
Confidence 567778899887 3333 335788999998766421 111112234455678999 777776654 678
Q ss_pred EEEEeCCCCCcceEEeccCCCcE-----------------EEEEecCC-cEEEEec-CCCcEEEEEec
Q psy2113 124 VKLWDLRSPKVPLFDMLGHEDKV-----------------MCVNWSDY-RYIMSGG-QDNSVRVFKTK 172 (183)
Q Consensus 124 i~vwd~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~-~~l~~~~-~dg~i~iwd~~ 172 (183)
|.+.+...+.....+..+....+ ..+-|+|+ ++|+... .+..+..+.+.
T Consensus 136 l~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~ 203 (465)
T d1xfda1 136 IYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (465)
T ss_dssp EEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred EEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecc
Confidence 88888876654112222222222 46779976 6666554 34445555543
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.85 E-value=0.12 Score=33.89 Aligned_cols=145 Identities=16% Similarity=0.138 Sum_probs=85.6
Q ss_pred eEEEEEeecCcEEEEEE----eccCCCCcccccccCccceEEEec------cCCCeeEEEEccC-Ce-EEE-EeCCCeEE
Q psy2113 10 TLGVIFMTVGALLTLTN----IEVTSLPSFFQLILQKTPLITLKG------HKEAISAVQWTAV-DE-IIT-SSWDHTLK 76 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~~-~~-l~s-~~~d~~v~ 76 (183)
..++++++++.++.+.. +.+++ ..++.+..+.. ....-..+.+.++ +. +++ .+.++.|.
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d--------~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~ 96 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFD--------KEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 96 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEEC--------TTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEe--------CCCCEEEEecccCCCcccccccccccccccccccceeccCCccccc
Confidence 46899999998765532 22232 12333333321 1112334555433 33 333 34556777
Q ss_pred EEEcCCCCCccCceeEEEe-ecCCcceEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe--ccCCCcEEEEEecC
Q psy2113 77 IWDAELGGMKKGAIVKSTF-SSHKEWVQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM--LGHEDKVMCVNWSD 153 (183)
Q Consensus 77 vwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~ 153 (183)
+++..... ...+ .........+++.+ ++.++++....+.+.+++.... . +..+ ..+......+++.+
T Consensus 97 ~~~~~g~~-------~~~~~~~~~~~p~~~avd~-~G~i~v~~~~~~~~~~~~~~g~-~-~~~~g~~~~~~~~~~i~~d~ 166 (279)
T d1q7fa_ 97 IYNQYGQF-------VRKFGATILQHPRGVTVDN-KGRIIVVECKVMRVIIFDQNGN-V-LHKFGCSKHLEFPNGVVVND 166 (279)
T ss_dssp EECTTSCE-------EEEECTTTCSCEEEEEECT-TSCEEEEETTTTEEEEECTTSC-E-EEEEECTTTCSSEEEEEECS
T ss_pred cccccccc-------eeecCCCcccccceecccc-CCcEEEEeeccceeeEeccCCc-e-eecccccccccccceeeecc
Confidence 77654321 2222 22345578889988 7888888777788888886543 2 3332 34556778888885
Q ss_pred C-cEEEEecCCCcEEEEEec
Q psy2113 154 Y-RYIMSGGQDNSVRVFKTK 172 (183)
Q Consensus 154 ~-~~l~~~~~dg~i~iwd~~ 172 (183)
+ ..+++....+.|.+||..
T Consensus 167 ~g~i~v~d~~~~~V~~~d~~ 186 (279)
T d1q7fa_ 167 KQEIFISDNRAHCVKVFNYE 186 (279)
T ss_dssp SSEEEEEEGGGTEEEEEETT
T ss_pred ceeEEeeeccccceeeeecC
Confidence 5 677777888889999864
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.69 E-value=0.0085 Score=42.95 Aligned_cols=108 Identities=12% Similarity=0.141 Sum_probs=67.7
Q ss_pred EEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeec---CCcceEEEEEecCCCCEEEEEe---------CCCeEE
Q psy2113 58 VQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSS---HKEWVQSVRWSPIDPQLFVSAS---------FDNSVK 125 (183)
Q Consensus 58 ~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~p~~~~~l~~~~---------~dg~i~ 125 (183)
..|.+++.++.-..+|.+.+||+.+++. ...+.. ..-.+....++| ++++++... ..+.+.
T Consensus 22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~------~~l~~~~~~~~~~~~~~~~Sp-D~~~vl~~~~~~~~~r~s~~~~~~ 94 (465)
T d1xfda1 22 AKWISDTEFIYREQKGTVRLWNVETNTS------TVLIEGKKIESLRAIRYEISP-DREYALFSYNVEPIYQHSYTGYYV 94 (465)
T ss_dssp CCBSSSSCBCCCCSSSCEEEBCGGGCCC------EEEECTTTTTTTTCSEEEECT-TSSEEEEEESCCCCSSSCCCSEEE
T ss_pred CEEeCCCcEEEEeCCCcEEEEECCCCCE------EEEEcCccccccccceeEECC-CCCeEEEEEcccceeEeeccccEE
Confidence 3577777766666788999999987654 111222 223566778999 777766653 357889
Q ss_pred EEeCCCCCcceEE--eccCCCcEEEEEecCC-cEEEEecCCCcEEEEEecCC
Q psy2113 126 LWDLRSPKVPLFD--MLGHEDKVMCVNWSDY-RYIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 126 vwd~~~~~~~~~~--~~~~~~~v~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 174 (183)
++|+.++.. ... .......+....|+|+ +.++-. .++.|.+.+...+
T Consensus 95 i~d~~~~~~-~~l~~~~~~~~~l~~~~wSPDG~~iafv-~~~nl~~~~~~~~ 144 (465)
T d1xfda1 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFI-FENNIYYCAHVGK 144 (465)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEE-ETTEEEEESSSSS
T ss_pred EEEccCCce-eeccCccCCccccceeeeccCCceEEEE-ecceEEEEecCCC
Confidence 999998764 222 1222344556788976 555443 3566777766544
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=95.66 E-value=0.047 Score=35.36 Aligned_cols=97 Identities=11% Similarity=0.179 Sum_probs=50.9
Q ss_pred EEeec--CcEEEEEE-eccCCCCcccccccCccceEEEeccCCCeeEEEEccCCe-EEEE-eCC-----CeEEEEEcCCC
Q psy2113 14 IFMTV--GALLTLTN-IEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDE-IITS-SWD-----HTLKIWDAELG 83 (183)
Q Consensus 14 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~-~~d-----~~v~vwd~~~~ 83 (183)
..+|+ |..++... -.+|.. +. .......+..+.+.+....|+|+|+ |+-. ..+ ..+.+.+...+
T Consensus 5 ~~sPdi~G~~v~f~~~~dl~~~-----d~-~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 5 LLNPDIHGDRIIFVCCDDLWEH-----DL-KSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp CEEEEEETTEEEEEETTEEEEE-----ET-TTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred ccCCCCCCCEEEEEeCCcEEEE-----EC-CCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence 45687 88776543 222221 22 2233456677778889999999987 5432 222 23666666655
Q ss_pred CCccCceeEEEeecCCcceEEEEEecCCCCEEEE
Q psy2113 84 GMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVS 117 (183)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~ 117 (183)
....-..................|+| +++.++.
T Consensus 79 ~~~~lt~~~~~~~~~~~~~~~~~~sp-dg~~l~~ 111 (281)
T d1k32a2 79 EIKRITYFSGKSTGRRMFTDVAGFDP-DGNLIIS 111 (281)
T ss_dssp EEEECCCCCEEEETTEECSEEEEECT-TCCEEEE
T ss_pred ceEEeeecCCCccCccccccccccCC-CCCEEEE
Confidence 43110000001112223456778898 6666654
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.05 E-value=0.25 Score=32.65 Aligned_cols=154 Identities=13% Similarity=0.054 Sum_probs=87.5
Q ss_pred eeEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccC
Q psy2113 9 LTLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKG 88 (183)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~ 88 (183)
+-.+-.|++....+.-.++..-.+..+ +...+ ....+ .....+.++.+.+++.|+.++.+ .+.++|..+++...
T Consensus 19 LgEgp~wd~~~~~l~wvDi~~~~I~r~--d~~~g-~~~~~-~~~~~~~~i~~~~dg~l~va~~~-gl~~~d~~tg~~~~- 92 (295)
T d2ghsa1 19 LGEGPTFDPASGTAWWFNILERELHEL--HLASG-RKTVH-ALPFMGSALAKISDSKQLIASDD-GLFLRDTATGVLTL- 92 (295)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEE--ETTTT-EEEEE-ECSSCEEEEEEEETTEEEEEETT-EEEEEETTTCCEEE-
T ss_pred eeeCCeEECCCCEEEEEECCCCEEEEE--ECCCC-eEEEE-ECCCCcEEEEEecCCCEEEEEeC-ccEEeecccceeeE-
Confidence 445667776554444444322222111 11122 22222 23456788998888887777765 57789988766311
Q ss_pred ceeEEEeec--CCcceEEEEEecCCCCEEEEEeC----CCeEEEEeCCCCCcceEEeccCCCcEEEEEecCC--cEEEEe
Q psy2113 89 AIVKSTFSS--HKEWVQSVRWSPIDPQLFVSASF----DNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSDY--RYIMSG 160 (183)
Q Consensus 89 ~~~~~~~~~--~~~~v~~~~~~p~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~l~~~ 160 (183)
...... ....++.+.+.| ++++.++... .+.-.+|.+.+++ .......-...+.+.|+++ ..+++-
T Consensus 93 ---l~~~~~~~~~~~~nd~~vd~-~G~iw~~~~~~~~~~~~g~l~~~~~g~--~~~~~~~~~~~Ng~~~s~d~~~l~~~d 166 (295)
T d2ghsa1 93 ---HAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVAKGK--VTKLFADISIPNSICFSPDGTTGYFVD 166 (295)
T ss_dssp ---EECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEETTE--EEEEEEEESSEEEEEECTTSCEEEEEE
T ss_pred ---EeeeecCCCcccceeeEECC-CCCEEEEeccccccccceeEeeecCCc--EEEEeeccCCcceeeecCCCceEEEee
Confidence 111111 123578889999 7877776543 2344566665554 2333333345688999965 356777
Q ss_pred cCCCcEEEEEecCC
Q psy2113 161 GQDNSVRVFKTKHQ 174 (183)
Q Consensus 161 ~~dg~i~iwd~~~~ 174 (183)
+..+.|..+++...
T Consensus 167 t~~~~I~~~~~d~~ 180 (295)
T d2ghsa1 167 TKVNRLMRVPLDAR 180 (295)
T ss_dssp TTTCEEEEEEBCTT
T ss_pred cccceeeEeeeccc
Confidence 78889999987543
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.83 E-value=0.33 Score=32.91 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCC-CeEEEEeCCCCCcce-EEeccCCCcEEEEEe
Q psy2113 74 TLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD-NSVKLWDLRSPKVPL-FDMLGHEDKVMCVNW 151 (183)
Q Consensus 74 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g~i~vwd~~~~~~~~-~~~~~~~~~v~~~~~ 151 (183)
.+.+||..++....... ....+........+.+ ++.+++.|+.+ ..+.+||..+..-.. ............+..
T Consensus 53 ~~~~yd~~t~~w~~~~~---~~~~~~~~~~~~~~~~-~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~ 128 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTV---TVTKHDMFCPGISMDG-NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATM 128 (387)
T ss_dssp EEEEECTTTCCBCCCEE---EECSCCCSSCEEEECT-TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEEC
T ss_pred EEEEEECCCCcEeecCC---CCCCcccceeEEEEec-CCcEEEeecCCCcceeEecCccCcccccccccccccccceeee
Confidence 37799998876532111 1122333344566778 78888888655 589999998764211 111111122233333
Q ss_pred cCCcEEEEecCC------CcEEEEEecCC
Q psy2113 152 SDYRYIMSGGQD------NSVRVFKTKHQ 174 (183)
Q Consensus 152 ~~~~~l~~~~~d------g~i~iwd~~~~ 174 (183)
.++..++.|+.+ ..+.+||+.+.
T Consensus 129 ~dG~v~v~GG~~~~~~~~~~v~~yd~~~~ 157 (387)
T d1k3ia3 129 SDGRVFTIGGSWSGGVFEKNGEVYSPSSK 157 (387)
T ss_dssp TTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cCCceeeeccccccccccceeeeecCCCC
Confidence 456777777642 35888998765
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.26 E-value=0.61 Score=30.22 Aligned_cols=104 Identities=7% Similarity=-0.032 Sum_probs=65.1
Q ss_pred EeccCCCeeEEEEccC-Ce-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEE
Q psy2113 48 LKGHKEAISAVQWTAV-DE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVK 125 (183)
Q Consensus 48 ~~~h~~~v~~~~~~~~-~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~ 125 (183)
+..+...+.+++|... +. +.+-..++.|+..++..... ...+......+..+++.+..+.+..+-...+.|.
T Consensus 31 ~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~------~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~ 104 (263)
T d1npea_ 31 LHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP------TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIE 104 (263)
T ss_dssp EEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC------EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc------EEEEEeccccccEEEEeccCCeEEEeccCCCEEE
Confidence 3344456778999844 55 44556678898888876543 2223233356889999874454555555678999
Q ss_pred EEeCCCCCcceEEeccCCCcEEEEEecCC-cEEE
Q psy2113 126 LWDLRSPKVPLFDMLGHEDKVMCVNWSDY-RYIM 158 (183)
Q Consensus 126 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~ 158 (183)
+.++..... ..........+..++..|. .+++
T Consensus 105 ~~~~dg~~~-~~l~~~~l~~p~~l~vdp~~g~ly 137 (263)
T d1npea_ 105 VAKMDGTQR-RVLFDTGLVNPRGIVTDPVRGNLY 137 (263)
T ss_dssp EEETTSCSC-EEEECSSCSSEEEEEEETTTTEEE
T ss_pred EEecCCceE-EEEecccccCCcEEEEecccCcEE
Confidence 999876553 3333333456788888754 4443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.73 E-value=1.6 Score=31.69 Aligned_cols=26 Identities=8% Similarity=0.020 Sum_probs=21.7
Q ss_pred CCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 153 DYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 153 ~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
.+.++++|+.||.++.+|.++++..-
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~lW 499 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKELW 499 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEEE
Confidence 35678889999999999999987653
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.69 E-value=1.7 Score=31.57 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=21.8
Q ss_pred CCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 153 DYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 153 ~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
.+.++++|+.||.++.+|.++++..-
T Consensus 487 agglVF~G~~dg~l~A~Da~TGe~LW 512 (573)
T d1kb0a2 487 AGNVVFQGTADGRLVAYHAATGEKLW 512 (573)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcEeE
Confidence 35688889999999999999988653
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=90.94 E-value=1.9 Score=31.19 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=32.5
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCCC
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKS 177 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~ 177 (183)
|.+.-||+.+++. +-... ...+...-... .+.+++.|+.||.++.+|.++++..
T Consensus 438 G~l~A~D~~tGk~-~W~~~-~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L 492 (560)
T d1kv9a2 438 GALLAWDPVKQKA-AWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL 492 (560)
T ss_dssp EEEEEEETTTTEE-EEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cceEEEeCCCCeE-eeecc-CCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence 4566677777653 22211 11111111112 3568888999999999999998765
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.34 E-value=1.4 Score=28.37 Aligned_cols=155 Identities=8% Similarity=0.057 Sum_probs=81.9
Q ss_pred eEEEEEeecCcEEEEEEeccCCCCcccccccCccceEEEeccCCCeeEEEEc-cCCeE-EEEeCCCeEEEEEcCCCCCcc
Q psy2113 10 TLGVIFMTVGALLTLTNIEVTSLPSFFQLILQKTPLITLKGHKEAISAVQWT-AVDEI-ITSSWDHTLKIWDAELGGMKK 87 (183)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~l-~s~~~d~~v~vwd~~~~~~~~ 87 (183)
..+++|......+...+.....+... ..........+......+.++++. ..+.| .+-...+.|.+.++.....
T Consensus 38 ~~~ld~D~~~~~iywsd~~~~~I~~~--~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-- 113 (263)
T d1npea_ 38 IIGLAFDCVDKVVYWTDISEPSIGRA--SLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-- 113 (263)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE--ESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred EEEEEEEeCCCEEEEEECCCCeEEEE--EcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE--
Confidence 34577777776666554222211111 111111222223334567888887 34554 4556678999999876543
Q ss_pred CceeEEEeecCCcceEEEEEecCCCCEEEEEeCC--CeEEEEeCCCCCcceEEeccCCCcEEEEEecC-CcEE-EEecCC
Q psy2113 88 GAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFD--NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWSD-YRYI-MSGGQD 163 (183)
Q Consensus 88 ~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~l-~~~~~d 163 (183)
..........+..++++|..+.++.+-... ..|..-++..... .......-.....+++.+ ++.| .+-...
T Consensus 114 ----~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~~~~~~P~glaiD~~~~~lYw~d~~~ 188 (263)
T d1npea_ 114 ----RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQDNLGLPNGLTFDAFSSQLCWVDAGT 188 (263)
T ss_dssp ----EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEECTTCSCEEEEEEETTTTEEEEEETTT
T ss_pred ----EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeeeecccccceEEEeecCcEEEEEeCCC
Confidence 112223345688999999555555453322 2344445544332 222323334567888873 3444 444556
Q ss_pred CcEEEEEecC
Q psy2113 164 NSVRVFKTKH 173 (183)
Q Consensus 164 g~i~iwd~~~ 173 (183)
+.|...|+..
T Consensus 189 ~~I~~~~~~g 198 (263)
T d1npea_ 189 HRAECLNPAQ 198 (263)
T ss_dssp TEEEEEETTE
T ss_pred CEEEEEECCC
Confidence 7777777653
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=88.99 E-value=2.5 Score=30.53 Aligned_cols=28 Identities=7% Similarity=0.207 Sum_probs=22.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcceEEe
Q psy2113 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDM 139 (183)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 139 (183)
.+.+++.|+.||.++-+|.++++. +-.+
T Consensus 468 agglVF~G~~dg~l~A~Da~tGe~-LW~~ 495 (560)
T d1kv9a2 468 AGNLVFQGTAAGQMHAYSADKGEA-LWQF 495 (560)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCE-EEEE
T ss_pred CCCEEEEECCCCcEEEEECCCCcE-eEEE
Confidence 456888899999999999999986 4333
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=88.91 E-value=2.5 Score=30.63 Aligned_cols=57 Identities=11% Similarity=0.201 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCCCccCceeEEEeecCCcc-eEEEEEecCCCCEEEEEeCCCeEEEEeCCCCCcceEEe
Q psy2113 73 HTLKIWDAELGGMKKGAIVKSTFSSHKEW-VQSVRWSPIDPQLFVSASFDNSVKLWDLRSPKVPLFDM 139 (183)
Q Consensus 73 ~~v~vwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 139 (183)
|.+.-||+.+++. .......... --.++. .+.+++.|+.||.++.+|.++++. +-.+
T Consensus 457 G~l~AiD~~tGk~------~W~~~~~~p~~gg~lst---agglVF~G~~dg~l~A~Da~TGe~-LW~~ 514 (573)
T d1kb0a2 457 GRLLAWDPVAQKA------AWSVEHVSPWNGGTLTT---AGNVVFQGTADGRLVAYHAATGEK-LWEA 514 (573)
T ss_dssp EEEEEEETTTTEE------EEEEEESSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCE-EEEE
T ss_pred ccEEEeCCCCCce------EeeecCCCCCCCceEEE---cCCEEEEECCCCeEEEEECCCCcE-eEEE
Confidence 4577778777664 3333221110 112222 566888899999999999999996 4443
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=88.83 E-value=2.2 Score=31.20 Aligned_cols=28 Identities=18% Similarity=0.298 Sum_probs=22.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcceEEe
Q psy2113 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDM 139 (183)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 139 (183)
.+.+++.|+.||.++-+|.++++. +-.+
T Consensus 483 agglVF~G~~Dg~l~A~Da~TGe~-LW~~ 510 (596)
T d1w6sa_ 483 AGDLVFYGTLDGYLKARDSDTGDL-LWKF 510 (596)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCE-EEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcE-eeEE
Confidence 456788899999999999999986 4444
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.95 E-value=2.6 Score=27.10 Aligned_cols=116 Identities=9% Similarity=-0.020 Sum_probs=70.0
Q ss_pred CCCeeEEEEcc-CCe-EEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEe-CCCeEEEEe
Q psy2113 52 KEAISAVQWTA-VDE-IITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSAS-FDNSVKLWD 128 (183)
Q Consensus 52 ~~~v~~~~~~~-~~~-l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~-~dg~i~vwd 128 (183)
...+.++++.. .+. +.+-...+.|.+.++..... .............++++|..+.++.+-. ..+.|.-.+
T Consensus 76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~------~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~ 149 (266)
T d1ijqa1 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGG 149 (266)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCCcceEEEeeccceEEEEecCCCEEEeEecCCceE------EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEec
Confidence 34566777763 344 55666778999999876543 2234444566889999995555555432 345676666
Q ss_pred CCCCCcceEEeccCCCcEEEEEecCC-c-EEEEecCCCcEEEEEecCC
Q psy2113 129 LRSPKVPLFDMLGHEDKVMCVNWSDY-R-YIMSGGQDNSVRVFKTKHQ 174 (183)
Q Consensus 129 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~-~l~~~~~dg~i~iwd~~~~ 174 (183)
+..... .......-..+..+++.+. + ...+-...+.|...|+...
T Consensus 150 ~dGs~~-~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~ 196 (266)
T d1ijqa1 150 LNGVDI-YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (266)
T ss_dssp TTSCCE-EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred cCCCce-ecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCC
Confidence 654432 2223333355678888743 4 4455566778888887554
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.79 E-value=3.9 Score=27.21 Aligned_cols=126 Identities=9% Similarity=0.092 Sum_probs=78.7
Q ss_pred CccceEEEeccCCCeeEEEEccC--C--eEEEE---eCCCeEEEEEcCCCCCc-c--CceeEEEeec---CCcceEEEEE
Q psy2113 41 QKTPLITLKGHKEAISAVQWTAV--D--EIITS---SWDHTLKIWDAELGGMK-K--GAIVKSTFSS---HKEWVQSVRW 107 (183)
Q Consensus 41 ~~~~~~~~~~h~~~v~~~~~~~~--~--~l~s~---~~d~~v~vwd~~~~~~~-~--~~~~~~~~~~---~~~~v~~~~~ 107 (183)
..+..+.+++|......+....+ . .++-+ ...+++++-++...... . .......+.. ..+...++..
T Consensus 184 er~~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv 263 (327)
T d1utca2 184 DRKVSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 263 (327)
T ss_dssp TTTEEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE
T ss_pred ccCcCccccceeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEe
Confidence 34455778888877766666522 1 12222 23368899998763321 1 1111111111 2455678888
Q ss_pred ecCCCCEEEEEeCCCeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEE
Q psy2113 108 SPIDPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRV 168 (183)
Q Consensus 108 ~p~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~i 168 (183)
++ ....+..-+.-|.+++||++++.+ +..-+-..+.|..-+-. ...-+++...+|.|.-
T Consensus 264 s~-kygiiyviTK~G~i~lyDleTgt~-i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 264 SE-KHDVVFLITKYGYIHLYDLETGTC-IYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp ET-TTTEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred ec-cCCEEEEEecCcEEEEEEcccccE-EEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 88 666888888899999999999987 66656666777655544 3366777778888754
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.79 E-value=1.7 Score=31.68 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=30.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcceEEeccCC-CcEEEEEec-CC-cEEEE
Q psy2113 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLGHE-DKVMCVNWS-DY-RYIMS 159 (183)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~v~~~~~~-~~-~~l~~ 159 (183)
.+.+++.|+.||.++-+|.++++. +-.+.-.. ..-.-+.|. ++ ++++.
T Consensus 496 agglVF~Gt~dg~l~A~Da~TGe~-LW~~~~~~~~~~~P~ty~~~G~qYv~i 546 (582)
T d1flga_ 496 AGNLVFTGTGDGYFKAFDAKSGKE-LWKFQTGSGIVSPPITWEQDGEQYLGV 546 (582)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cCCeEEEeCCCCeEEEEECCCCcE-eEEEECCCCccccCEEEEECCEEEEEE
Confidence 456888899999999999999997 54443221 111224554 55 56554
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=84.66 E-value=1.8 Score=31.47 Aligned_cols=48 Identities=23% Similarity=0.184 Sum_probs=30.1
Q ss_pred CCCEEEEEeCCCeEEEEeCCCCCcceEEecc-CCCcEEEEEec-CC-cEEEE
Q psy2113 111 DPQLFVSASFDNSVKLWDLRSPKVPLFDMLG-HEDKVMCVNWS-DY-RYIMS 159 (183)
Q Consensus 111 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-~~~~v~~~~~~-~~-~~l~~ 159 (183)
.+.+++.|+.||.++-+|.++++. +-...- ....-.-+.|. ++ +++++
T Consensus 474 agglVf~G~~dg~l~A~Da~tGe~-lW~~~l~~~~~a~P~ty~~dGkqYi~v 524 (571)
T d2ad6a1 474 KGGLVWYATLDGYLKALDNKDGKE-LWNFKMPSGGIGSPMTYSFKGKQYIGS 524 (571)
T ss_dssp TTTEEEEECTTSEEEEEETTTCCE-EEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred cCCEEEEECCCCeEEEEECCCCcE-EEEEECCCCceecceEEEECCEEEEEE
Confidence 355788899999999999999986 433321 11111224443 55 56654
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=83.23 E-value=6.6 Score=28.56 Aligned_cols=55 Identities=7% Similarity=0.000 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCCcceEEeccCCCcEEEEEec-CCcEEEEecCCCcEEEEEecCCCCCC
Q psy2113 122 NSVKLWDLRSPKVPLFDMLGHEDKVMCVNWS-DYRYIMSGGQDNSVRVFKTKHQPKSG 178 (183)
Q Consensus 122 g~i~vwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~ 178 (183)
|.+.-||+.+++. +-.. .+..+...-... .+.+++.|+.||.++.+|.++++..-
T Consensus 453 G~l~A~D~~TG~~-~W~~-~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW 508 (596)
T d1w6sa_ 453 GQIKAYNAITGDY-KWEK-MERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (596)
T ss_dssp EEEEEECTTTCCE-EEEE-EESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ceEEEEeCCCCce-eccc-CCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEee
Confidence 4566677777663 2111 111111111111 35678889999999999999988653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.21 E-value=5.2 Score=27.38 Aligned_cols=103 Identities=9% Similarity=0.008 Sum_probs=56.6
Q ss_pred cCCCeeEEEEccCCeEEEEeCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeEEE-EeC
Q psy2113 51 HKEAISAVQWTAVDEIITSSWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSVKL-WDL 129 (183)
Q Consensus 51 h~~~v~~~~~~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i~v-wd~ 129 (183)
-..++.++.++|. .++....++.+.++++...+..+...-... ..-.+.+.+++|++ .+..++++..++ ..+ -++
T Consensus 124 ~~~~~~~~~~~p~-~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~-~~~~~~~~~v~ws~-kgkq~v~~~g~~-~q~k~~i 199 (381)
T d1xipa_ 124 FEKPVFQLKNVNN-TLVILNSVNDLSALDLRTKSTKQLAQNVTS-FDVTNSQLAVLLKD-RSFQSFAWRNGE-MEKQFEF 199 (381)
T ss_dssp CSSCEEEEEECSS-EEEEEETTSEEEEEETTTCCEEEEEESEEE-EEECSSEEEEEETT-SCEEEEEEETTE-EEEEEEE
T ss_pred ccccccceecCCc-eeEEEecCCCEEEEEeccCccccccCCcce-EEecCCceEEEEeC-CcEEEEEeCCCc-eeeccCC
Confidence 3456788888774 455667788999999887653210000011 12246688899988 777777774332 211 122
Q ss_pred CCCCcceEEeccCCCcEEEEEecCC-cEEE
Q psy2113 130 RSPKVPLFDMLGHEDKVMCVNWSDY-RYIM 158 (183)
Q Consensus 130 ~~~~~~~~~~~~~~~~v~~~~~~~~-~~l~ 158 (183)
..... +.........|.+|.|..+ .+++
T Consensus 200 ~~~~~-~~~p~~~~~~v~sI~WL~~~~F~v 228 (381)
T d1xipa_ 200 SLPSE-LEELPVEEYSPLSVTILSPQDFLA 228 (381)
T ss_dssp CCCHH-HHTSCTTTSEEEEEEESSSSEEEE
T ss_pred CCccc-cCCCcCCCcceeEEEEecCceEEE
Confidence 21111 1111123456889999865 4443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.99 E-value=4.6 Score=25.86 Aligned_cols=122 Identities=8% Similarity=0.024 Sum_probs=72.3
Q ss_pred EeccCCCeeEEEEccC-CeEE-EE-eCCCeEEEEEcCCCCCccCceeEEEeecCCcceEEEEEecCCCCEEEEEeCCCeE
Q psy2113 48 LKGHKEAISAVQWTAV-DEII-TS-SWDHTLKIWDAELGGMKKGAIVKSTFSSHKEWVQSVRWSPIDPQLFVSASFDNSV 124 (183)
Q Consensus 48 ~~~h~~~v~~~~~~~~-~~l~-s~-~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~i 124 (183)
+.........++..|. +.|. +- +..+.|.-.++..... .......-.....+++.+.++++..+-...+.|
T Consensus 115 ~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~------~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I 188 (266)
T d1ijqa1 115 FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI 188 (266)
T ss_dssp EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------EEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred EcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCce------ecccccccceeeEEEeeccccEEEEecCCcCEE
Confidence 3344556788888864 5543 32 3345666666654432 112222335578999998444455555667899
Q ss_pred EEEeCCCCCcce-EEeccCCCcEEEEEecCCcEEEEecCCCcEEEEEecCCC
Q psy2113 125 KLWDLRSPKVPL-FDMLGHEDKVMCVNWSDYRYIMSGGQDNSVRVFKTKHQP 175 (183)
Q Consensus 125 ~vwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 175 (183)
...|+....... ............++...+....+-..++.|.-.+..++.
T Consensus 189 ~~~~~dG~~~~~~~~~~~~~~~p~~lav~~~~ly~td~~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 189 SSIDVNGGNRKTILEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGS 240 (266)
T ss_dssp EEEETTSCSCEEEEECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTCC
T ss_pred EEEECCCCCEEEEEeCCCcccccEEEEEECCEEEEEECCCCeEEEEECCCCc
Confidence 999987654312 122222345677887766666666677888887766654
|