Psyllid ID: psy2129

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MASFAFHDLENRIDHIETTRLKTQNNVSKPQRAVLGVINQNTSKADLSRKAKTVANQKIGLKVQNSNTNQCSKAIEKPIQQQKPQQYSSSIFPRHVQKPTNAFPFKIHEDDSTDEVTDKEEKHHDDKEYGNEENEVFDEVAMLPQAFCKAKVWKDEEEPMSLEKSILSPMSVDLSQTEKGTPTRNVEDMVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEARTF
cccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccccccEEEEccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHccccccHHHHHHHHHHHHHHHccccccccHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccccEEccccccc
cccccccccccccccHHccccccccccccccccHHcccccccccccccccccccccccccHHHHcccccccccHcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcHHHHccccHHHHHHHHHHHHHHHHcccccccHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHEEEEcccccccEEEccccccc
MASFAFHDLENRIDHIETTRlktqnnvskpqRAVLGVInqntskadLSRKAKTVANQKIglkvqnsntnQCSKAIekpiqqqkpqqysssifprhvqkptnafpfkiheddstdevtdkeekhhddkeygneenevfDEVAMLPQAFCKAkvwkdeeepmsleksilspmsvdlsqtekgtptrnVEDMVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVAskyeeiyppevnefvyitddtytKKQLLKMETLILKVLnfdlniptvhSFICHITVSGHLDQSVLYLAQYLSELAlvsgdpflqflPSLIACSAIALARYCLDYkeawpssladitghsLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEARTF
masfafhdlenridhiettrlktqnnvskpqravlgvinqntskadlsrKAKTVanqkiglkvqnsntNQCSKAIEKPIQQQKPQQYSSSIFPRHVQKPTNafpfkiheddstdevtdkeekhhddkeygnEENEVFDEVAMLPQAFCKAKVWKDEEEPMSLEksilspmsvdlsqtekgtptrnvEDMVCMLINADDYRDDIYQYLLKCerrirpkanymrkqndinsemRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFvaskyeeiyppevNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRkgeaasqkaaynkyklnlwknvstveartf
MASFAFHDLENRIDHIETTRLKTQNNVSKPQRAVLGVINQNTSKADLSRKAKTVANQKIGLKVQNSNTNQCSKAIEkpiqqqkpqqysssiFPRHVQKPTNAFPFKIHEDDSTDEVTDKEEKHHDDKEYGNEENEVFDEVAMLPQAFCKAKVWKDEEEPMSLEKSILSPMSVDLSQTEKGTPTRNVEDMVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEARTF
***************************************************************************************************************************************VFDEVAMLPQAFCKAKVW********************************VEDMVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVS*******
**SF********************************************************************************************************************************************************************************TPTRNVEDMVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEARTF
MASFAFHDLENRIDHIETTRLKTQNNVSKPQRAVLGVINQNTSKADLSRKAKTVANQKIGLKVQNSNTNQCSKAIEK***********SSIFPRHVQKPTNAFPFKIHED********************NEENEVFDEVAMLPQAFCKAKVWKDEEEPMSLEKSILSPMSVDLSQTEKGTPTRNVEDMVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEARTF
***********************************************************************************************************************************************************************************GTPTRNVEDMVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEARTF
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MASFAFHDLENRIDHIETTRLKTQNNVSKPQRAVLGVINQNTSKADLSRKAKTVANQKIGLKVQNSNTNQCSKAIEKPIQQQKPQQYSSSIFPRHVQKPTNAFPFKIHEDDSTDEVTDKEEKHHDDKEYGNEENEVFDEVAMLPQAFCKAKVWKDEEEPMSLEKSILSPMSVDLSQTEKGTPTRNVEDMVCMLINADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEARTF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query498 2.2.26 [Sep-21-2011]
P43449395 Cyclin-A2 OS=Gallus gallu yes N/A 0.650 0.820 0.372 2e-67
P51943422 Cyclin-A2 OS=Mus musculus yes N/A 0.640 0.755 0.397 3e-67
P30274430 Cyclin-A2 OS=Bos taurus G no N/A 0.777 0.9 0.353 2e-66
P18606418 Cyclin-A1 OS=Xenopus laev N/A N/A 0.761 0.906 0.352 1e-65
P24861426 G2/mitotic-specific cycli N/A N/A 0.787 0.920 0.340 3e-65
P37881421 Cyclin-A2 OS=Mesocricetus N/A N/A 0.640 0.757 0.396 5e-65
P04962422 G2/mitotic-specific cycli N/A N/A 0.783 0.924 0.340 9e-65
P78396465 Cyclin-A1 OS=Homo sapiens yes N/A 0.558 0.597 0.422 6e-64
Q61456421 Cyclin-A1 OS=Mus musculus no N/A 0.771 0.912 0.340 1e-63
Q6AY13421 Cyclin-A1 OS=Rattus norve no N/A 0.755 0.893 0.345 1e-63
>sp|P43449|CCNA2_CHICK Cyclin-A2 OS=Gallus gallus GN=CCNA2 PE=2 SV=1 Back     alignment and function desciption
 Score =  257 bits (656), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 148/397 (37%), Positives = 210/397 (52%), Gaps = 73/397 (18%)

Query: 104 PFKIHEDDSTDEVTDKEEKHHDDKEYGNEENEVFDEVAMLPQAFCKAKVWKDEEEPMS-- 161
           PF ++ D+  +E    + K   D+E  +                  A     E  P++  
Sbjct: 61  PFSVYVDEPDEERRRPQRKKERDEEAADAP------------GLRAALGTVGERRPLAPL 108

Query: 162 ---LEKSILSPMSVDLSQTEKGTPTRNVEDMVCMLINADDYRDDIYQYLLKCERRIRPKA 218
              +E S+ SP  +D+S T +     NV        N  DY  DI+ YL + E + +PK 
Sbjct: 109 GNAMELSLDSPSIMDISITSEAEERPNVN-------NVPDYVSDIHTYLREMEVKCKPKI 161

Query: 219 NYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLG 278
            YM+KQ DI + MR++LVDW                                        
Sbjct: 162 GYMKKQPDITNNMRAILVDW---------------------------------------- 181

Query: 279 TTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEE 338
                   ++EV EEYK+ NETLHLA+NY+DRFLS MSV+R KLQL+GT A+ +ASK+EE
Sbjct: 182 --------LVEVGEEYKLQNETLHLAVNYIDRFLSSMSVLRGKLQLVGTAAMLLASKFEE 233

Query: 339 IYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVL 398
           IYPPEV EFVYITDDTY KKQ+L+ME LILKVL+FDL  PT++ F+    +    +  V 
Sbjct: 234 IYPPEVAEFVYITDDTYNKKQVLRMEHLILKVLSFDLAAPTINQFLTQYFLHQQTNAKVE 293

Query: 399 YLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTE 458
            L+ YL EL L+  DP+L++LPS+IA +A  LA Y +   + WP SL  +TG++L+ +  
Sbjct: 294 SLSMYLGELTLIDADPYLKYLPSVIAAAAFHLASYTIT-GQTWPESLCKVTGYTLEHIKP 352

Query: 459 CVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEA 495
           C+  LH  + K    +Q++   KYK   +  VS ++A
Sbjct: 353 CLMDLHRTYLKAAQHTQQSIREKYKSTKYHAVSLIDA 389
Essential for the control of the cell cycle at the G1/S (start) and the G2/M (mitosis) transitions.
Gallus gallus (taxid: 9031)
>sp|P51943|CCNA2_MOUSE Cyclin-A2 OS=Mus musculus GN=Ccna2 PE=1 SV=2 Back     alignment and function description
>sp|P30274|CCNA2_BOVIN Cyclin-A2 OS=Bos taurus GN=CCNA2 PE=1 SV=2 Back     alignment and function description
>sp|P18606|CCNA1_XENLA Cyclin-A1 OS=Xenopus laevis GN=ccna1 PE=2 SV=1 Back     alignment and function description
>sp|P24861|CCNA_PATVU G2/mitotic-specific cyclin-A OS=Patella vulgata PE=2 SV=1 Back     alignment and function description
>sp|P37881|CCNA2_MESAU Cyclin-A2 OS=Mesocricetus auratus GN=CCNA2 PE=2 SV=1 Back     alignment and function description
>sp|P04962|CCNA_SPISO G2/mitotic-specific cyclin-A OS=Spisula solidissima PE=2 SV=1 Back     alignment and function description
>sp|P78396|CCNA1_HUMAN Cyclin-A1 OS=Homo sapiens GN=CCNA1 PE=1 SV=1 Back     alignment and function description
>sp|Q61456|CCNA1_MOUSE Cyclin-A1 OS=Mus musculus GN=Ccna1 PE=1 SV=2 Back     alignment and function description
>sp|Q6AY13|CCNA1_RAT Cyclin-A1 OS=Rattus norvegicus GN=Ccna1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
380020021462 PREDICTED: LOW QUALITY PROTEIN: G2/mitot 0.827 0.891 0.364 1e-74
156549324459 PREDICTED: G2/mitotic-specific cyclin-A 0.863 0.936 0.371 4e-72
328712300469 PREDICTED: cyclin-A2-like [Acyrthosiphon 0.560 0.594 0.435 2e-71
350414539 1371 PREDICTED: N-acetyltransferase 10-like [ 0.570 0.207 0.444 9e-71
340715080 1366 PREDICTED: n-acetyltransferase 10-like [ 0.570 0.207 0.444 2e-70
328785703 1294 PREDICTED: n-acetyltransferase 10-like [ 0.570 0.219 0.444 2e-70
91081399437 PREDICTED: similar to cyclin a [Triboliu 0.831 0.947 0.341 3e-70
157107420477 cyclin a [Aedes aegypti] gi|108884055|gb 0.833 0.870 0.373 1e-69
332022836481 Cyclin-A2 [Acromyrmex echinatior] 0.853 0.883 0.347 2e-68
383860821 1369 PREDICTED: N-acetyltransferase 10 [Megac 0.528 0.192 0.448 4e-68
>gi|380020021|ref|XP_003693897.1| PREDICTED: LOW QUALITY PROTEIN: G2/mitotic-specific cyclin-A-like [Apis florea] Back     alignment and taxonomy information
 Score =  286 bits (733), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 193/530 (36%), Positives = 273/530 (51%), Gaps = 118/530 (22%)

Query: 1   MASFAFH-DLENRIDHI----ETTRLKTQNNVSKP-QRAVLGVINQNTSKADLSRKAKTV 54
           MA+   H D ENRI  +    E   +  QN   +P +RAVLGV++ N             
Sbjct: 1   MATIRVHEDQENRISDVRRGKENINVPLQNQTLQPTKRAVLGVLHNN------------- 47

Query: 55  ANQKIGLKVQNSNTNQCSKAIEKPIQQQKPQQYSSSIFPRHVQ------KPTNAFPFKIH 108
                           C++ I+  I + +  Q + ++ P H +      +      FKI+
Sbjct: 48  ----------------CNRNIKSEIYKDEKYQKTKAVIPTHFEAFKIYEEKKEEVIFKIY 91

Query: 109 EDDSTDEVTDKEEKHHDDKEYGNEENEVFDE-----------VAMLPQAFCKAKVWKDEE 157
           ED   +E T    +   DK+   +EN  F+            V+ LP  +   +    ++
Sbjct: 92  ED-KLEEETSVALRDTKDKKEXEKENITFEREKPRLEVNPINVSNLPTFYNAIQDINQKK 150

Query: 158 E---------PMSLEKSILSPMSVDLSQTEKGTPTR--NVEDMVCMLINADDYRDDIYQY 206
           E         PMSLEKSI       LS ++K    R  ++++M     + D+YR DIY Y
Sbjct: 151 ENEITFSQGSPMSLEKSISY-----LSSSKKNHQKRRKSIKEMRMNFFDVDEYRADIYNY 205

Query: 207 LLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSL 266
           L   E   RPK  YM+KQ+DI   MRS+LVDWL                           
Sbjct: 206 LRVAETHHRPKPGYMKKQSDITYSMRSILVDWL--------------------------- 238

Query: 267 MSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLG 326
                                +EVAEEY++  ETL+LA++Y+DRFLS MSVV+SKLQL+G
Sbjct: 239 ---------------------VEVAEEYRLQTETLYLAVSYIDRFLSYMSVVKSKLQLVG 277

Query: 327 TTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICH 386
           T A+F+A+KYEEIYPPEV EFVYITDDTY KK +L+ME LIL+VL+FDL +PT  +F+  
Sbjct: 278 TAAMFIAAKYEEIYPPEVGEFVYITDDTYPKKHVLRMEHLILRVLSFDLTVPTPLTFLME 337

Query: 387 ITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLA 446
             +S +L + + +LA YL EL+++ GDP+LQFLPS +A SAIALAR+ L  +E WP  L 
Sbjct: 338 FCISNNLSEKIKFLAMYLCELSMLEGDPYLQFLPSHLAASAIALARHTL-LEEMWPHELE 396

Query: 447 DITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEAR 496
             TG+SL  L +C+ CL++         Q+A   KYK N + +V+ +  R
Sbjct: 397 LSTGYSLKDLKDCILCLNKTFYNALNIRQQAIQEKYKSNKYGHVALLLPR 446

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|156549324|ref|XP_001600970.1| PREDICTED: G2/mitotic-specific cyclin-A [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|328712300|ref|XP_001942828.2| PREDICTED: cyclin-A2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|350414539|ref|XP_003490349.1| PREDICTED: N-acetyltransferase 10-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340715080|ref|XP_003396048.1| PREDICTED: n-acetyltransferase 10-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|328785703|ref|XP_001120548.2| PREDICTED: n-acetyltransferase 10-like [Apis mellifera] Back     alignment and taxonomy information
>gi|91081399|ref|XP_972623.1| PREDICTED: similar to cyclin a [Tribolium castaneum] gi|270005176|gb|EFA01624.1| hypothetical protein TcasGA2_TC007193 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|157107420|ref|XP_001649769.1| cyclin a [Aedes aegypti] gi|108884055|gb|EAT48280.1| AAEL000672-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|332022836|gb|EGI63109.1| Cyclin-A2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383860821|ref|XP_003705887.1| PREDICTED: N-acetyltransferase 10 [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
ZFIN|ZDB-GENE-040311-2391 ccna1 "cyclin A1" [Danio rerio 0.425 0.542 0.516 4.2e-57
MGI|MGI:108042421 Ccna1 "cyclin A1" [Mus musculu 0.433 0.513 0.497 3.3e-55
RGD|1310639421 Ccna1 "cyclin A1" [Rattus norv 0.433 0.513 0.497 3.3e-55
UNIPROTKB|P78396465 CCNA1 "Cyclin-A1" [Homo sapien 0.433 0.464 0.511 5.4e-55
UNIPROTKB|F1NJI2398 CCNA2 "Cyclin-A2" [Gallus gall 0.429 0.537 0.506 2.1e-54
UNIPROTKB|F1NQG1432 CCNA2 "Cyclin-A2" [Gallus gall 0.429 0.495 0.506 2.1e-54
UNIPROTKB|P43449395 CCNA2 "Cyclin-A2" [Gallus gall 0.429 0.541 0.506 2.1e-54
UNIPROTKB|F1MVR8459 CCNA1 "Uncharacterized protein 0.419 0.455 0.518 3.7e-54
UNIPROTKB|F1RSR0427 CCNA1 "Uncharacterized protein 0.433 0.505 0.497 3.7e-54
UNIPROTKB|F1PYU7421 CCNA1 "Uncharacterized protein 0.425 0.503 0.502 7.8e-54
ZFIN|ZDB-GENE-040311-2 ccna1 "cyclin A1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 556 (200.8 bits), Expect = 4.2e-57, Sum P(2) = 4.2e-57
 Identities = 110/213 (51%), Positives = 151/213 (70%)

Query:   282 LFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYP 341
             + V  ++EV EEYK+ +ETL+LA+NY+DRFLS MSV+R KLQL+GT A+ +A+KYEE+YP
Sbjct:   172 ILVDWLVEVGEEYKLCSETLYLAVNYLDRFLSCMSVLRGKLQLVGTAAILLAAKYEEVYP 231

Query:   342 PEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQSVLYLA 401
             PEV+EFVYITDDTYTKKQLL+ME  +L+VL FD+  PT+H F+   ++  H+    L LA
Sbjct:   232 PEVDEFVYITDDTYTKKQLLRMEQHLLRVLAFDMTAPTIHQFLMQYSLEEHVCARTLNLA 291

Query:   402 QYLSELALVSGDPFLQFLPSLIACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVK 461
              YLSEL+L+  DPF+Q+LPS  A +A  LA Y L+    WP +L   TG+SL  +  C+K
Sbjct:   292 LYLSELSLLEVDPFVQYLPSKTAAAAYCLANYTLN-GALWPENLYAFTGYSLAVIGPCLK 350

Query:   462 CLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVE 494
              LH++H    +  Q+A   KYK + +  VS +E
Sbjct:   351 ELHKLHLGAGSRPQQAIQEKYKSSKYHGVSQLE 383
GO:0051726 "regulation of cell cycle" evidence=IEA
GO:0005634 "nucleus" evidence=IEA
GO:0019901 "protein kinase binding" evidence=IEA
GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=IEA
GO:0007049 "cell cycle" evidence=IEA
GO:0051301 "cell division" evidence=IEA
MGI|MGI:108042 Ccna1 "cyclin A1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1310639 Ccna1 "cyclin A1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P78396 CCNA1 "Cyclin-A1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJI2 CCNA2 "Cyclin-A2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQG1 CCNA2 "Cyclin-A2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P43449 CCNA2 "Cyclin-A2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MVR8 CCNA1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1RSR0 CCNA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PYU7 CCNA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P51943CCNA2_MOUSENo assigned EC number0.39740.64050.7559yesN/A
P14785CCNA_DROMENo assigned EC number0.35620.67460.6843yesN/A
P43449CCNA2_CHICKNo assigned EC number0.37270.65060.8202yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
pfam00134127 pfam00134, Cyclin_N, Cyclin, N-terminal domain 3e-53
COG5024440 COG5024, COG5024, Cyclin [Cell division and chromo 3e-33
pfam02984117 pfam02984, Cyclin_C, Cyclin, C-terminal domain 4e-27
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 7e-20
cd0004388 cd00043, CYCLIN, Cyclin box fold 1e-19
cd0004388 cd00043, CYCLIN, Cyclin box fold 1e-09
smart0038583 smart00385, CYCLIN, domain present in cyclins, TFI 1e-08
COG5333297 COG5333, CCL1, Cdk activating kinase (CAK)/RNA pol 1e-04
>gnl|CDD|215740 pfam00134, Cyclin_N, Cyclin, N-terminal domain Back     alignment and domain information 
 Score =  175 bits (445), Expect = 3e-53
 Identities = 74/175 (42%), Positives = 100/175 (57%), Gaps = 48/175 (27%)

Query: 202 DIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVD 261
           DIY YL + E   RP  +Y+ +Q DIN +MR++L+DWL+EV EE+K+  ETL+LA+NY+ 
Sbjct: 1   DIYAYLRELEEEDRPPPDYLDQQPDINPKMRAILIDWLVEVHEEFKLLPETLYLAVNYL- 59

Query: 262 RFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSK 321
                                                          DRFLS   V R+K
Sbjct: 60  -----------------------------------------------DRFLSKQPVPRTK 72

Query: 322 LQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLN 376
           LQL+G T L +A+KYEEIYPP V +FVYITD+ YTK+++L+ME LIL  LN+DL+
Sbjct: 73  LQLVGVTCLLIAAKYEEIYPPSVEDFVYITDNAYTKEEILRMELLILSTLNWDLS 127

Cyclins regulate cyclin dependent kinases (CDKs). Human cyclin-O is a Uracil-DNA glycosylase that is related to other cyclins. Cyclins contain two domains of similar all-alpha fold, of which this family corresponds with the N-terminal domain. Length = 127
>gnl|CDD|227357 COG5024, COG5024, Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|217307 pfam02984, Cyclin_C, Cyclin, C-terminal domain Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold Back     alignment and domain information
>gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>gnl|CDD|227640 COG5333, CCL1, Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 498
KOG0654|consensus359 100.0
COG5024440 Cyclin [Cell division and chromosome partitioning] 100.0
KOG0653|consensus391 100.0
KOG0655|consensus408 100.0
KOG0656|consensus335 100.0
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 99.92
TIGR00569305 ccl1 cyclin ccl1. University). 99.88
KOG0834|consensus323 99.85
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 99.83
KOG0835|consensus 367 99.8
KOG0794|consensus264 99.78
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 99.74
PRK00423310 tfb transcription initiation factor IIB; Reviewed 99.71
KOG1597|consensus308 99.51
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 99.41
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 99.39
KOG2496|consensus325 99.35
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 99.3
smart0038583 CYCLIN domain present in cyclins, TFIIB and Retino 98.77
cd0004388 CYCLIN Cyclin box fold. Protein binding domain fun 98.67
PF08613149 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu 98.2
KOG1598|consensus 521 97.9
KOG0834|consensus323 97.62
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.56
PRK00423310 tfb transcription initiation factor IIB; Reviewed 97.33
PF0038271 TFIIB: Transcription factor TFIIB repeat; InterPro 97.28
KOG4164|consensus497 97.11
TIGR00569305 ccl1 cyclin ccl1. University). 97.01
KOG0655|consensus408 96.94
KOG0656|consensus335 96.21
KOG0835|consensus367 96.01
KOG0653|consensus391 95.76
PF00134127 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR 95.52
KOG1674|consensus218 92.59
KOG1675|consensus343 92.46
COG5333297 CCL1 Cdk activating kinase (CAK)/RNA polymerase II 92.37
COG5024440 Cyclin [Cell division and chromosome partitioning] 92.01
COG1405285 SUA7 Transcription initiation factor TFIIIB, Brf1 89.32
PF02984118 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR 89.24
KOG1597|consensus308 87.17
KOG0794|consensus264 85.95
>KOG0654|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.7e-42  Score=350.68  Aligned_cols=260  Identities=41%  Similarity=0.604  Sum_probs=250.0

Q ss_pred             hhhhhccCCchhhhHHHHHHHHHHHHHh-hCCCcccccc-CCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q psy2129         186 VEDMVCMLINADDYRDDIYQYLLKCERR-IRPKANYMRK-QNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRF  263 (498)
Q Consensus       186 ~~~~~~~~~~~~eY~~di~~~l~~~E~~-~~p~~~y~~~-q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRf  263 (498)
                      .+..+.++..+..|+.+|++|++..|.+ .+|.++||+. |.++++.||.++|||+++|.+++++..+++|+++++.|||
T Consensus        89 ~ds~~~dp~~c~~~~~~I~~~~r~~ei~~~rp~~~~~e~vq~d~t~smrgilvdwlvevsee~r~~~e~l~ls~~~~drf  168 (359)
T KOG0654|consen   89 IDSVGEDPQMCLKIAAKIYNTLRVSDIKSERPLPSKFEFVQADITPSMRGILVDWLVEVSEEYRLTFETLYLSVNYRDRF  168 (359)
T ss_pred             hhhcccchHHHHHHHHHHhhcccccchhhccCcccceeeeecCCCcchhhhhhhhhhHHHHHHHhhhhheeecHHHHHHH
Confidence            3345668889999999999999999999 9999999996 9999999999999999999999999999999999999999


Q ss_pred             hhhhhhhcchhhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCC
Q psy2129         264 LSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPE  343 (498)
Q Consensus       264 Ls~~~v~~~~~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~  343 (498)
                      |+...+                                                .+.++|++|++|++||+|+||+.+|.
T Consensus       169 l~~~~~------------------------------------------------~~~k~ql~g~s~m~I~sk~ee~~~~~  200 (359)
T KOG0654|consen  169 LSYKEV------------------------------------------------NKQKLQLVGISAMLIASKYEEIKEPR  200 (359)
T ss_pred             hccCcc------------------------------------------------HHHHHHHhCcccceeeccchhhcchH
Confidence            999988                                                89999999999999999999999999


Q ss_pred             hhHHHhhcccccCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCC-CchhHHHHHHHHHHHHhhcCccccCCChHH
Q psy2129         344 VNEFVYITDDTYTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGH-LDQSVLYLAQYLSELALVSGDPFLQFLPSL  422 (498)
Q Consensus       344 l~dlv~i~~~~yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~-~~~~i~~lA~~llelsL~d~~~fl~y~PS~  422 (498)
                      +.+|++++++.|+..++..||..||..|.|++..||...|+..|+.... ...+++.++.|++|++++++. |+.|.||.
T Consensus       201 ~~ef~~itd~ty~~~qv~~~~~~il~~l~~~~~~pt~~~~l~~~~~~~~~~~~~~e~~~~yl~elsll~~~-~l~y~PSl  279 (359)
T KOG0654|consen  201 VEEFCYITDNTYTYWQVLRMEIDILNALTFELVRPTSKTFLRRFLRVAQTPELQVEPLANYLTELSLLDYI-FLKYLPSL  279 (359)
T ss_pred             HHHHHhhhhhhhHHHHHHHHHHHHHHHhHHHHhCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhHH-HhccChHH
Confidence            9999999999999999999999999999999999999999999977654 677899999999999999999 99999999


Q ss_pred             HHHHHHHHHHHHcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHHHhCCCCchhHHHHhhCCCccCceeecCCC
Q psy2129         423 IACSAIALARYCLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEAR  496 (498)
Q Consensus       423 IAaAaL~LA~~~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~~~~~~~I~~KY~~~k~~~VS~~~~~  496 (498)
                      |||||+++|+.+++ .+.|++.|+..|||+.+++++|+..|+ ++.++++...++|++||+.+||+.||.+++|
T Consensus       280 iAasAv~lA~~~~~-~~pW~~~L~~~T~y~~edl~~~v~~L~-~~l~~~~~~l~air~ky~~~k~~~Va~~~~p  351 (359)
T KOG0654|consen  280 IAASAVFLARLTLD-FHPWNQTLEDYTGYKAEDLKPCVLDLH-LYLNASGTDLPAIREKYKQSKFKEVALLPVP  351 (359)
T ss_pred             HHHHHHHHHHhhcc-CCCCchhhHHhhcccHHHHHHHHHHHh-cccCCCCCchHHHHHHhhhhhhhhhhccCCC
Confidence            99999999999999 999999999999999999999999999 9999999999999999999999999999987

>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0653|consensus Back     alignment and domain information
>KOG0655|consensus Back     alignment and domain information
>KOG0656|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0834|consensus Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>KOG0794|consensus Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>KOG2496|consensus Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma Back     alignment and domain information
>cd00043 CYCLIN Cyclin box fold Back     alignment and domain information
>PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1598|consensus Back     alignment and domain information
>KOG0834|consensus Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>PRK00423 tfb transcription initiation factor IIB; Reviewed Back     alignment and domain information
>PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG4164|consensus Back     alignment and domain information
>TIGR00569 ccl1 cyclin ccl1 Back     alignment and domain information
>KOG0655|consensus Back     alignment and domain information
>KOG0656|consensus Back     alignment and domain information
>KOG0835|consensus Back     alignment and domain information
>KOG0653|consensus Back     alignment and domain information
>PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1674|consensus Back     alignment and domain information
>KOG1675|consensus Back     alignment and domain information
>COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] Back     alignment and domain information
>COG5024 Cyclin [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] Back     alignment and domain information
>PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) Back     alignment and domain information
>KOG1597|consensus Back     alignment and domain information
>KOG0794|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
3qhr_B261 Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic 2e-65
4ii5_B258 Structure Of Pcdk2/cyclina Bound To Adp And 1 Magne 2e-65
4i3z_B257 Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES 2e-65
3ddq_B269 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-64
3ddp_B268 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-64
3bht_B262 Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN 7e-64
3dog_B264 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 7e-64
2g9x_B262 Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN 8e-64
1vin_A268 Bovine Cyclin A3 Length = 268 8e-64
4bcq_D262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 2e-63
4bco_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 1e-61
1ogu_B260 Structure Of Human Thr160-phospho Cdk2/cyclin A Com 1e-61
2x1n_B261 Truncation And Optimisation Of Peptide Inhibitors O 1e-61
1qmz_B259 Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com 1e-61
1fin_B260 Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 1e-61
1vyw_B265 Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 1e-61
1jst_B258 Phosphorylated Cyclin-Dependent Kinase-2 Bound To C 2e-61
3f5x_B256 Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Boun 2e-61
1e9h_B261 Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex 2e-61
4bcq_B262 Structure Of Cdk2 In Complex With Cyclin A And A 2- 2e-60
2b9r_A269 Crystal Structure Of Human Cyclin B1 Length = 269 3e-32
2jgz_B260 Crystal Structure Of Phospho-Cdk2 In Complex With C 1e-30
1w98_B283 The Structural Basis Of Cdk2 Activation By Cyclin E 4e-19
3g33_B306 Crystal Structure Of Cdk4CYCLIN D3 Length = 306 8e-18
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 5e-15
2w96_A271 Crystal Structure Of Cdk4 In Complex With A D-Type 4e-13
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 5e-15
2w9z_A257 Crystal Structure Of Cdk4 In Complex With A D-Type 4e-13
2pk2_A358 Cyclin Box Structure Of The P-Tefb Subunit Cyclin T 5e-06
2w2h_A264 Structural Basis Of Transcription Activation By The 9e-06
3mi9_B266 Crystal Structure Of Hiv-1 Tat Complexed With Human 3e-05
2ivx_A257 Crystal Structure Of Human Cyclin T2 At 1.8 A Resol 4e-05
3tnh_B259 Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 4e-05
3blh_B260 Crystal Structure Of Human Cdk9CYCLINT1 Length = 26 5e-05
>pdb|3QHR|B Chain B, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 261 Back     alignment and structure 
Iteration: 1

 Score =  246 bits (629), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 132/297 (44%), Positives = 183/297 (61%), Gaps = 54/297 (18%)
Query: 198 DYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAI 257
           DY++DI+ YL + E + +PK  YM++Q DI + MR++LVDW                   
Sbjct: 6   DYQEDIHTYLREMEVKCKPKVGYMKRQPDITNSMRAILVDW------------------- 46
Query: 258 NYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSV 317
                                        ++EV EEYK+ NETLHLA+NY+DRFLS MSV
Sbjct: 47  -----------------------------LVEVGEEYKLQNETLHLAVNYIDRFLSSMSV 77
Query: 318 VRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNI 377
           +R KLQL+GT A+ +ASK+EEIYPPEV EFVYITDDTY+KKQ+L+ME L+LKVL FDL  
Sbjct: 78  LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYSKKQVLRMEHLVLKVLAFDLAA 137
Query: 378 PTVHSFICHITVSGHLDQS---VLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYC 434
           PTV+ F+    +  HL  +   V  LA +L EL+L+  DP+L++LPSLIA +A  LA Y 
Sbjct: 138 PTVNQFLTQYFL--HLQPANCKVESLAMFLGELSLIDADPYLKYLPSLIAGAAFHLALYT 195
Query: 435 LDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVS 491
           +   ++WP SLA  TG++L+SL  C+  LH+ + K    +Q++   KYK + + +VS
Sbjct: 196 VT-GQSWPESLAQQTGYTLESLKPCLVDLHQTYLKAPQHAQQSIREKYKHSKYHSVS 251
>pdb|4II5|B Chain B, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium Ion Length = 258 Back     alignment and structure
>pdb|4I3Z|B Chain B, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 257 Back     alignment and structure
>pdb|3DDQ|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Roscovitine Length = 269 Back     alignment and structure
>pdb|3DDP|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX With The Inhibitor Cr8 Length = 268 Back     alignment and structure
>pdb|3BHT|B Chain B, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 262 Back     alignment and structure
>pdb|3DOG|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN Complex With The Inhibitor N-&-N1 Length = 264 Back     alignment and structure
>pdb|2G9X|B Chain B, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Nu6271 Length = 262 Back     alignment and structure
>pdb|1VIN|A Chain A, Bovine Cyclin A3 Length = 268 Back     alignment and structure
>pdb|4BCQ|D Chain D, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|4BCO|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|1OGU|B Chain B, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 260 Back     alignment and structure
>pdb|2X1N|B Chain B, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2, Cyclin A Through Structure Guided Design Length = 261 Back     alignment and structure
>pdb|1QMZ|B Chain B, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 259 Back     alignment and structure
>pdb|1FIN|B Chain B, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 260 Back     alignment and structure
>pdb|1VYW|B Chain B, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 265 Back     alignment and structure
>pdb|1JST|B Chain B, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 258 Back     alignment and structure
>pdb|3F5X|B Chain B, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At Its Active Site Length = 256 Back     alignment and structure
>pdb|1E9H|B Chain B, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 261 Back     alignment and structure
>pdb|4BCQ|B Chain B, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 262 Back     alignment and structure
>pdb|2B9R|A Chain A, Crystal Structure Of Human Cyclin B1 Length = 269 Back     alignment and structure
>pdb|2JGZ|B Chain B, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 260 Back     alignment and structure
>pdb|1W98|B Chain B, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 283 Back     alignment and structure
>pdb|3G33|B Chain B, Crystal Structure Of Cdk4CYCLIN D3 Length = 306 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|2W96|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 271 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2W9Z|A Chain A, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 257 Back     alignment and structure
>pdb|2PK2|A Chain A, Cyclin Box Structure Of The P-Tefb Subunit Cyclin T1 Derived From A Fusion Complex With Eiav Tat Length = 358 Back     alignment and structure
>pdb|2W2H|A Chain A, Structural Basis Of Transcription Activation By The Cyclin T1-Tat-Tar Rna Complex From Eiav Length = 264 Back     alignment and structure
>pdb|3MI9|B Chain B, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb Length = 266 Back     alignment and structure
>pdb|2IVX|A Chain A, Crystal Structure Of Human Cyclin T2 At 1.8 A Resolution (Casp Target) Length = 257 Back     alignment and structure
>pdb|3TNH|B Chain B, Cdk9CYCLIN T IN COMPLEX WITH CAN508 Length = 259 Back     alignment and structure
>pdb|3BLH|B Chain B, Crystal Structure Of Human Cdk9CYCLINT1 Length = 260 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 1e-101
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 4e-93
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 6e-92
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 5e-91
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 2e-88
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 8e-88
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 3e-83
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 6e-80
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 8e-19
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 5e-18
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 2e-17
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 2e-17
2ivx_A257 Cyclin-T2; transcription regulation, cell division 7e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 7e-13
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Length = 260 Back     alignment and structure
 Score =  302 bits (775), Expect = e-101
 Identities = 131/299 (43%), Positives = 179/299 (59%), Gaps = 50/299 (16%)

Query: 198 DYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAI 257
           DY +DI+ YL + E + +PK  YM+KQ DI + MR++LVDWL+EV EEYK+ NETLHLA+
Sbjct: 5   DYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAV 64

Query: 258 NYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSV 317
           NY+DRFLS MSV+R KLQL+GT A+ +AS                               
Sbjct: 65  NYIDRFLSSMSVLRGKLQLVGTAAMLLAS------------------------------- 93

Query: 318 VRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLNI 377
                            K+EEIYPPEV EFVYITDDTYTKKQ+L+ME L+LKVL FDL  
Sbjct: 94  -----------------KFEEIYPPEVAEFVYITDDTYTKKQVLRMEHLVLKVLTFDLAA 136

Query: 378 PTVHSFIC-HITVSGHLDQSVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARYCLD 436
           PTV+ F+  +       +  V  LA +L EL+L+  DP+L++LPS+IA +A  LA Y + 
Sbjct: 137 PTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALYTVT 196

Query: 437 YKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEA 495
             ++WP SL   TG++L+SL  C+  LH+ + K    +Q++   KYK + +  VS +  
Sbjct: 197 -GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNP 254
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Length = 269 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Length = 271 Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 306 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Length = 254 Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 283 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Length = 257 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Length = 252 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Length = 358 Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Length = 258 Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Length = 235 Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Length = 323 Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Length = 257 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 285 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query498
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 100.0
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 100.0
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 100.0
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 100.0
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 100.0
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 100.0
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 100.0
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 100.0
2ivx_A257 Cyclin-T2; transcription regulation, cell division 100.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 100.0
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 100.0
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 99.98
2pk2_A358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 99.97
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 99.96
1c9b_A207 General transcription factor IIB; protein-DNA comp 99.95
1ais_B200 TFB TFIIB, protein (transcription initiation facto 99.91
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 99.81
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 99.58
1c9b_A207 General transcription factor IIB; protein-DNA comp 98.77
1ais_B200 TFB TFIIB, protein (transcription initiation facto 98.64
2pmi_B293 PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de 98.06
1w98_B283 Cyclin E, G1/S-specific cyclin E1; cell cycle, tra 97.58
2cch_B260 Cyclin A2, cyclin-A; complex(transferase/cell divi 97.36
2b9r_A269 Human cyclin B1; cell cycle; 2.90A {Homo sapiens} 97.36
1zp2_A235 RNA polymerase II holoenzyme cyclin-like subunit; 97.33
2w96_A271 G1/S-specific cyclin-D1; serine/threonine-protein 97.24
3rgf_B285 Cyclin-C; protein kinase complex, transferase,tran 97.05
1f5q_B252 Gamma herpesvirus cyclin; herpesviral cyclin, cycl 96.87
1g3n_C257 V-cyclin; cyclin-dependent kinase, INK4 inhibitor, 96.62
2f2c_A254 Cyclin homolog, V-cyclin; small molecule inhibitor 96.59
3g33_B306 CCND3 protein; Ser/Thr protein kinase, cell cycle, 96.47
2ivx_A257 Cyclin-T2; transcription regulation, cell division 96.0
2i53_A258 Cyclin K; cell cycle, transcription, cyclin BOX, C 95.88
2pk2_A 358 Cyclin-T1, protein TAT; TAR, twinning, transcripti 95.54
4bbr_M345 Transcription initiation factor IIB; RNA polymeras 94.72
1jkw_A323 Cyclin H; cell cycle, cell division, nuclear prote 94.28
3k7a_M345 Transcription initiation factor IIB; RNA polymeras 92.63
3h4c_A260 Transcription factor TFIIB-like; cyclin, transcrip 88.73
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
Probab=100.00  E-value=8.8e-54  Score=424.87  Aligned_cols=254  Identities=52%  Similarity=0.850  Sum_probs=244.6

Q ss_pred             chhhhHHHHHHHHHHHHHhhCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhhhhcchh
Q psy2129         195 NADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKL  274 (498)
Q Consensus       195 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~v~~~~~  274 (498)
                      .+.||++|||.||++.|.++.|+++|+..|++|++.||.+++|||++|+..|+++++|+|+||+|+|||++...+     
T Consensus         2 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~v-----   76 (260)
T 2cch_B            2 EVPDYHEDIHTYLREMEVKCKPKVGYMKKQPDITNSMRAILVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMSV-----   76 (260)
T ss_dssp             CCCTTHHHHHHHHHHHHHHTCCCTTGGGGCSSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             chHhHHHHHHHHHHHHHhhcCCCchhhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCC-----
Confidence            367999999999999999999999999999999999999999999999999999999999999999999999888     


Q ss_pred             hhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhcccc
Q psy2129         275 QLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDT  354 (498)
Q Consensus       275 ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~~  354 (498)
                                                                 .+.++|++|+||||||||+||..||++++++.++++.
T Consensus        77 -------------------------------------------~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~  113 (260)
T 2cch_B           77 -------------------------------------------LRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDT  113 (260)
T ss_dssp             -------------------------------------------CHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSS
T ss_pred             -------------------------------------------CHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCC
Confidence                                                       8889999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHhCCCch-hHHHHHHHHHHHHhhcCccccCCChHHHHHHHHHHHHH
Q psy2129         355 YTKKQLLKMETLILKVLNFDLNIPTVHSFICHITVSGHLDQ-SVLYLAQYLSELALVSGDPFLQFLPSLIACSAIALARY  433 (498)
Q Consensus       355 yt~~eI~~mE~~IL~~L~fdL~~pTp~~FL~~fl~~~~~~~-~i~~lA~~llelsL~d~~~fl~y~PS~IAaAaL~LA~~  433 (498)
                      |++++|.+||+.||++|+|+++.|||++||.+|+..++.+. ++..+|++++++++.+...+++|+||.||+||+++|+.
T Consensus       114 ~~~~~i~~mE~~iL~~L~~~l~~~tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~~~~~~~~~~Ps~iAaAai~lA~~  193 (260)
T 2cch_B          114 YTKKQVLRMEHLVLKVLTFDLAAPTVNQFLTQYFLHQQPANCKVESLAMFLGELSLIDADPYLKYLPSVIAGAAFHLALY  193 (260)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCCCCCCHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHcCCccCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhHHHHhCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999776 88999999999999887658999999999999999999


Q ss_pred             HcCCCCCChhhHHHHhCCCHHHHHHHHHHHHHHHHhCCCCchhHHHHhhCCCccCceeecCCCC
Q psy2129         434 CLDYKEAWPSSLADITGHSLDSLTECVKCLHEVHRKGEAASQKAAYNKYKLNLWKNVSTVEART  497 (498)
Q Consensus       434 ~l~~~~~W~~~L~~~tgyt~~~I~~c~~~L~~l~~~~~~~~~~~I~~KY~~~k~~~VS~~~~~~  497 (498)
                      .++ .+.|...|..++|++.++|++|++.|.+++.+.+..+.++|++||++++|+.||.++||.
T Consensus       194 ~~~-~~~w~~~l~~~~g~~~~~i~~~~~~l~~~~~~~~~~~~~~i~~Ky~~~~~~~vs~~~~~~  256 (260)
T 2cch_B          194 TVT-GQSWPESLIRKTGYTLESLKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPE  256 (260)
T ss_dssp             HHH-SCCSCHHHHHHHCCCHHHHHHHHHHHHHHHHHGGGSSCCHHHHHHTSGGGTTGGGSCCCS
T ss_pred             HhC-CCcchHHHHHHhCcCHHHHHHHHHHHHHHHHhcCCcchHHHHHHHCcccccceeCCCCcc
Confidence            999 789999999999999999999999999999988878889999999999999999999996
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Back     alignment and structure
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Back     alignment and structure
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* Back     alignment and structure
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... Back     alignment and structure
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* Back     alignment and structure
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} Back     alignment and structure
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A Back     alignment and structure
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Back     alignment and structure
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A Back     alignment and structure
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Back     alignment and structure
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* Back     alignment and structure
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 Back     alignment and structure
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C Back     alignment and structure
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M Back     alignment and structure
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A Back     alignment and structure
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 498
d1w98b2140 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human 1e-41
d2cchb1128 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [T 7e-40
d1g3nc1132 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma 1e-38
d1bu2a1127 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saim 6e-38
d1f5qb1141 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesviru 1e-37
d2i53a1144 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) 4e-25
d2cchb2124 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [T 5e-24
d1jkwa1151 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo s 9e-23
d2ivxa1143 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) 1e-22
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Length = 140 Back     information, alignment and structure

class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  143 bits (362), Expect = 1e-41
 Identities = 48/179 (26%), Positives = 92/179 (51%), Gaps = 47/179 (26%)

Query: 198 DYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAI 257
             R+++++ +L  E+      +++ +   +  +MR++L+DWL+EV E YK+H ET +LA 
Sbjct: 9   ANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQ 68

Query: 258 NYVDRFLSLMSVVRSKLQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSV 317
           ++ DR+++                                                  +V
Sbjct: 69  DFFDRYMATQ-----------------------------------------------ENV 81

Query: 318 VRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDDTYTKKQLLKMETLILKVLNFDLN 376
           V++ LQL+G ++LF+A+K EEIYPP++++F Y+TD   +  ++L ME +I+K L + L+
Sbjct: 82  VKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDEILTMELMIMKALKWRLS 140
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 128 Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Length = 132 Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Length = 127 Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 141 Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Length = 144 Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Length = 124 Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Length = 151 Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query498
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 99.98
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.98
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 99.97
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 99.96
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 99.95
d2cchb2124 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 99.88
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 99.74
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 99.71
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 99.67
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 98.37
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 98.32
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 98.32
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 98.29
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 98.21
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 98.16
d1w98b1130 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 97.94
d1aisb295 Transcription factor IIB (TFIIB), core domain {Arc 97.83
d1vola195 Transcription factor IIB (TFIIB), core domain {Hum 97.76
d1aisb198 Transcription factor IIB (TFIIB), core domain {Arc 97.74
d1vola2109 Transcription factor IIB (TFIIB), core domain {Hum 97.43
d2i53a1144 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 97.28
d1f5qb1141 Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] 97.11
d1jkwa2126 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 97.1
d1bu2a1127 Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} 97.04
d1g3nc1132 Viral cyclin {Kaposi's sarcoma-associated herpesvi 97.01
d2cchb1128 Cyclin A {Cow (Bos taurus) [TaxId: 9913]} 96.97
d1w98b2140 G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax 96.92
d2ivxa1143 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.8
d1jkwa1151 Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 95.4
d2ivxa2113 Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} 95.23
d2i53a2110 Cyclin K {Human (Homo sapiens) [TaxId: 9606]} 91.42
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Cyclin-like
superfamily: Cyclin-like
family: Cyclin
domain: G1/S-specific cyclin-E1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=1.2e-32  Score=247.08  Aligned_cols=134  Identities=36%  Similarity=0.737  Sum_probs=127.8

Q ss_pred             chhhhHHHHHHHHHHHHHhhCCCccccccCCCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhhh-hhcch
Q psy2129         195 NADDYRDDIYQYLLKCERRIRPKANYMRKQNDINSEMRSVLVDWLIEVAEEYKMHNETLHLAINYVDRFLSLMS-VVRSK  273 (498)
Q Consensus       195 ~~~eY~~di~~~l~~~E~~~~p~~~y~~~q~~i~~~~R~~lvdWl~ev~~~~~l~~eTl~LAV~~lDRfLs~~~-v~~~~  273 (498)
                      ...+|++|||.+|+++|.++.|..+|+.+|++++++||.++||||++|+..|+++++|+|+||+||||||+... +    
T Consensus         6 ~~~~~~~dI~~~l~~~E~~~~~~~~~l~~q~~i~~~~R~~lidW~~~v~~~~~l~~et~~lAv~llDryl~~~~~v----   81 (140)
T d1w98b2           6 LSWANREEVWKIMLNKEKTYLRDQHFLEQHPLLQPKMRAILLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQENV----   81 (140)
T ss_dssp             CSSSCHHHHHHHHHHHTTTSCCCTTGGGGCTTCCHHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCCCC----
T ss_pred             ccccCHHHHHHHHHHHHHhhCCChHHHhCCCCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhccccc----
Confidence            34488999999999999999999999999999999999999999999999999999999999999999998654 4    


Q ss_pred             hhhccchhHHHHHHHHHHHHhhchhHHHHHHHHHHHHHhhhccccchhhhhhhhhhhhhhhcccccCCCChhHHHhhccc
Q psy2129         274 LQLLGTTALFVASIIEVAEEYKMHNETLHLAINYVDRFLSLMSVVRSKLQLLGTTALFVASKYEEIYPPEVNEFVYITDD  353 (498)
Q Consensus       274 ~ql~~~r~l~va~i~ev~~~l~L~~~Tl~lAi~~fDRfl~~~~i~~~~lqLva~aCL~IAsK~EE~~pp~l~dlv~i~~~  353 (498)
                                                                  .++++||+|+|||+||+|+||..+|.+++++.++++
T Consensus        82 --------------------------------------------~~~~lqL~a~acL~IAsK~ee~~~~~~~~l~~~~~~  117 (140)
T d1w98b2          82 --------------------------------------------VKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDG  117 (140)
T ss_dssp             --------------------------------------------CGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTT
T ss_pred             --------------------------------------------cHHHHhHHHHHHHHHHHHHcccCCCCHHHHHHHHcC
Confidence                                                        788999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHcCCCcc
Q psy2129         354 TYTKKQLLKMETLILKVLNFDLN  376 (498)
Q Consensus       354 ~yt~~eI~~mE~~IL~~L~fdL~  376 (498)
                      .|++++|.+||..||++|+|+++
T Consensus       118 ~~t~~ei~~mE~~IL~~L~~~Ln  140 (140)
T d1w98b2         118 ACSGDEILTMELMIMKALKWRLS  140 (140)
T ss_dssp             SSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCCHHHHHHHHHHHHHHCCCcCC
Confidence            99999999999999999999985
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w98b1 a.74.1.1 (B:228-357) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Back     information, alignment and structure
>d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Back     information, alignment and structure
>d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} Back     information, alignment and structure
>d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} Back     information, alignment and structure
>d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure