Psyllid ID: psy2133

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
ELKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSEDEEEESELSVSELKEQRRQEKEKKEREALEKSLEQEAKTEEEDEGISWGMGDDAEEETDLSENPYASTNNEELYLDDPKKTLRGWFDREGKGFPLFTFLIL
cccccEEEEEEEcccccEEEEcccccccEEEcccccccccEEEEEEcccccccccccEEEEEcccccccccccEEcccccEEEEccccEEEEccEEEEEEEcccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccccccccccccccccHHHHHHcccccccccccEEEEEc
cccccEEEEEEEEcccEEEEEEcccccccccccccccccEEEEEEEccccccccccEEEEEEcccccccEEccccccccEEEEEEEccEEEEccccEEEEEEccccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccHHHHHHHHHHHccccccEEEEEEc
elksgqivntidlstrsfycvgrernthlnllhptVSRYHAILQYkstfdekdpargfyvydlgsthgtflnrckikpkmYVRIHVGhmlsfgsstrffilqgpsedeeeeseLSVSELKEQRRQEKEKKEREALEKSLEQEAKteeedegiswgmgddaeeetdlsenpyastnneelylddpkktlrgwfdregkgfplfTFLIL
elksgqivntidlstrsFYCVGRERNThlnllhptVSRYHAILQYKstfdekdpaRGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSEdeeeeselsvselkeqrrqekekkerealeksleqeakteeedegiswgmgdDAEEETDLSenpyastnneelylddpKKTLRGWFdregkgfplftflil
ELKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPsedeeeeselsvselkeqrrqekekkerealeksleQEAKTEEEDEGISWGMGDDAEEETDLSENPYASTNNEELYLDDPKKTLRGWFDREGKGFPLFTFLIL
******IVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFIL***********************************************************************************KKTLRGWFDREGKGFPLFTFLI*
ELKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQG******************************************************************************DDPKKTLRGWFDREGKGFPLFTFLIL
ELKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQ**************************************************SWGMGDDAEEETDLSENPYASTNNEELYLDDPKKTLRGWFDREGKGFPLFTFLIL
***SGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPS******SELSVSELKEQRRQEKEKKERE***********************************NPYASTNNEELYLDDPKKTLRGWFDREGKGFPLFTFLIL
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ELKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSEDExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxEGISWGMGDDAEEETDLSENPYASTNNEELYLDDPKKTLRGWFDREGKGFPLFTFLIL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query207 2.2.26 [Sep-21-2011]
Q9BWU0 796 Kanadaptin OS=Homo sapien yes N/A 0.927 0.241 0.453 3e-45
P34648 710 Uncharacterized protein Z yes N/A 0.937 0.273 0.381 3e-29
Q8W4D8314 FHA domain-containing pro no N/A 0.483 0.318 0.345 2e-09
Q5M9G6389 Smad nuclear interacting yes N/A 0.526 0.280 0.321 3e-09
Q8BIZ6383 Smad nuclear-interacting no N/A 0.526 0.284 0.321 4e-09
Q8TAD8396 Smad nuclear-interacting no N/A 0.526 0.275 0.321 7e-09
Q12972 351 Nuclear inhibitor of prot no N/A 0.458 0.270 0.284 1e-06
Q28147 351 Nuclear inhibitor of prot no N/A 0.458 0.270 0.284 1e-06
Q8R3G1 351 Nuclear inhibitor of prot no N/A 0.458 0.270 0.284 1e-06
Q5SW79 1584 Centrosomal protein of 17 no N/A 0.391 0.051 0.337 4e-06
>sp|Q9BWU0|NADAP_HUMAN Kanadaptin OS=Homo sapiens GN=SLC4A1AP PE=1 SV=1 Back     alignment and function desciption
 Score =  181 bits (460), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/214 (45%), Positives = 135/214 (63%), Gaps = 22/214 (10%)

Query: 2   LKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKST-----FDEKDPAR 56
           LK G I+ T  L   S+   GR     + L HP+VSRYHA+LQ++++      D   P  
Sbjct: 172 LKGGTILGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGP-- 229

Query: 57  GFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSEDEEEESELSV 116
           GFY+YDLGSTHGTFLN+ +I P+ Y R+HVGH++ FG STR FILQGP ED E ESEL+V
Sbjct: 230 GFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQGPEEDREAESELTV 289

Query: 117 SELKEQRRQEKEKKEREALEKSLEQ-----------EAKTEEEDEGISWGMGDDAEEETD 165
           ++LKE R+Q++   E++ L +  ++            A +++++ G +WGMG+DA E+ D
Sbjct: 290 TQLKELRKQQQILLEKKMLGEDSDEEEEMDTSERKINAGSQDDEMGCTWGMGEDAVED-D 348

Query: 166 LSENPYA---STNNEELYLDDPKKTLRGWFDREG 196
             ENP         E  Y+ DPKK L+G+FDREG
Sbjct: 349 AEENPIVLEFQQEREAFYIKDPKKALQGFFDREG 382

Homo sapiens (taxid: 9606)
>sp|P34648|YOT2_CAEEL Uncharacterized protein ZK632.2 OS=Caenorhabditis elegans GN=ZK632.2 PE=4 SV=1 Back     alignment and function description
>sp|Q8W4D8|DDL_ARATH FHA domain-containing protein DDL OS=Arabidopsis thaliana GN=DDL PE=1 SV=1 Back     alignment and function description
>sp|Q5M9G6|SNIP1_RAT Smad nuclear interacting protein 1 OS=Rattus norvegicus GN=Snip1 PE=2 SV=1 Back     alignment and function description
>sp|Q8BIZ6|SNIP1_MOUSE Smad nuclear-interacting protein 1 OS=Mus musculus GN=Snip1 PE=1 SV=1 Back     alignment and function description
>sp|Q8TAD8|SNIP1_HUMAN Smad nuclear-interacting protein 1 OS=Homo sapiens GN=SNIP1 PE=1 SV=1 Back     alignment and function description
>sp|Q12972|PP1R8_HUMAN Nuclear inhibitor of protein phosphatase 1 OS=Homo sapiens GN=PPP1R8 PE=1 SV=2 Back     alignment and function description
>sp|Q28147|PP1R8_BOVIN Nuclear inhibitor of protein phosphatase 1 OS=Bos taurus GN=PPP1R8 PE=1 SV=1 Back     alignment and function description
>sp|Q8R3G1|PP1R8_MOUSE Nuclear inhibitor of protein phosphatase 1 OS=Mus musculus GN=Ppp1r8 PE=1 SV=1 Back     alignment and function description
>sp|Q5SW79|CE170_HUMAN Centrosomal protein of 170 kDa OS=Homo sapiens GN=CEP170 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
322790487 830 hypothetical protein SINV_11784 [Solenop 0.937 0.233 0.617 3e-64
193676504 632 PREDICTED: kanadaptin [Acyrthosiphon pis 0.995 0.325 0.569 2e-63
328775942 682 PREDICTED: kanadaptin-like [Apis mellife 0.961 0.291 0.579 2e-61
195399628 669 GJ14404 [Drosophila virilis] gi|19414198 0.932 0.288 0.556 2e-60
345496941 700 PREDICTED: kanadaptin-like [Nasonia vitr 0.937 0.277 0.575 4e-59
332024750 745 Kanadaptin [Acromyrmex echinatior] 0.937 0.260 0.612 1e-58
195113813 695 GI10806 [Drosophila mojavensis] gi|19391 0.932 0.277 0.557 1e-58
307176928 735 Kanadaptin [Camponotus floridanus] 0.932 0.262 0.612 2e-58
340723222 694 PREDICTED: kanadaptin-like [Bombus terre 0.966 0.288 0.560 2e-58
350418646 692 PREDICTED: kanadaptin-like [Bombus impat 0.966 0.289 0.556 1e-57
>gi|322790487|gb|EFZ15365.1| hypothetical protein SINV_11784 [Solenopsis invicta] Back     alignment and taxonomy information
 Score =  250 bits (638), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 121/196 (61%), Positives = 159/196 (81%), Gaps = 2/196 (1%)

Query: 2   LKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVY 61
           LKSG I++ IDL+ RSFY VGR  + +L+L HPT+SR+HAI+QY++T DEK+ + GFY+Y
Sbjct: 161 LKSGMILDKIDLTKRSFYVVGRSLSCNLSLAHPTISRHHAIIQYRATGDEKN-STGFYLY 219

Query: 62  DLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSEDEEEESELSVSELKE 121
           DL STHGTF N  +IK + YVR+H GHM+ FG S R +ILQ P +D+EEESELSV+ELKE
Sbjct: 220 DLDSTHGTFWNGHRIKSRTYVRLHGGHMIRFGCSHRKYILQAPLDDQEEESELSVTELKE 279

Query: 122 QRRQE-KEKKEREALEKSLEQEAKTEEEDEGISWGMGDDAEEETDLSENPYASTNNEELY 180
           +R +E +E++ R+  ++  E+ A+  EE+EGI WGMG+DA+EETDL+ENPYAS  +EELY
Sbjct: 280 KRLEELREREIRQQEQEEAEKRAREAEENEGIDWGMGEDADEETDLTENPYASMADEELY 339

Query: 181 LDDPKKTLRGWFDREG 196
           LDDPKKTLRGWF+REG
Sbjct: 340 LDDPKKTLRGWFEREG 355

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|193676504|ref|XP_001943468.1| PREDICTED: kanadaptin [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328775942|ref|XP_396092.4| PREDICTED: kanadaptin-like [Apis mellifera] Back     alignment and taxonomy information
>gi|195399628|ref|XP_002058421.1| GJ14404 [Drosophila virilis] gi|194141981|gb|EDW58389.1| GJ14404 [Drosophila virilis] Back     alignment and taxonomy information
>gi|345496941|ref|XP_001601225.2| PREDICTED: kanadaptin-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|332024750|gb|EGI64939.1| Kanadaptin [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|195113813|ref|XP_002001462.1| GI10806 [Drosophila mojavensis] gi|193918056|gb|EDW16923.1| GI10806 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|307176928|gb|EFN66245.1| Kanadaptin [Camponotus floridanus] Back     alignment and taxonomy information
>gi|340723222|ref|XP_003399992.1| PREDICTED: kanadaptin-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350418646|ref|XP_003491924.1| PREDICTED: kanadaptin-like [Bombus impatiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query207
FB|FBgn0038640 726 CG7706 [Drosophila melanogaste 0.265 0.075 0.781 4e-46
RGD|1307080 536 Slc4a1ap "solute carrier famil 0.942 0.363 0.399 5.1e-35
UNIPROTKB|F1M3U8 539 F1M3U8 "Uncharacterized protei 0.942 0.361 0.399 5.1e-35
UNIPROTKB|Q9BWU0 796 SLC4A1AP "Kanadaptin" [Homo sa 0.487 0.126 0.518 1.2e-34
UNIPROTKB|F1MR50 744 SLC4A1AP "Uncharacterized prot 0.497 0.138 0.528 5.2e-34
UNIPROTKB|F1PB26 743 SLC4A1AP "Uncharacterized prot 0.497 0.138 0.518 1.4e-33
UNIPROTKB|F1NZR9 658 F1NZR9 "Uncharacterized protei 0.942 0.296 0.394 1.7e-33
UNIPROTKB|F1SED8 792 SLC4A1AP "Uncharacterized prot 0.497 0.130 0.537 1.8e-33
UNIPROTKB|J9NV18 791 SLC4A1AP "Uncharacterized prot 0.497 0.130 0.518 1.8e-33
WB|WBGene00014011 710 ZK632.2 [Caenorhabditis elegan 0.492 0.143 0.401 2.6e-25
FB|FBgn0038640 CG7706 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 244 (91.0 bits), Expect = 4.0e-46, Sum P(3) = 4.0e-46
 Identities = 43/55 (78%), Positives = 50/55 (90%)

Query:   142 EAKTEEEDEGISWGMGDDAEEETDLSENPYASTNNEELYLDDPKKTLRGWFDREG 196
             EA+  E +EG+SWGMGDDA+EETDLS NPYASTNNEEL+ DDPKKTLRG+F+REG
Sbjct:   228 EAEERERNEGVSWGMGDDADEETDLSHNPYASTNNEELFFDDPKKTLRGFFEREG 282
GO:0017107 "anion exchanger adaptor activity" evidence=ISS
RGD|1307080 Slc4a1ap "solute carrier family 4 (anion exchanger), member 1, adaptor protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M3U8 F1M3U8 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BWU0 SLC4A1AP "Kanadaptin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MR50 SLC4A1AP "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PB26 SLC4A1AP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZR9 F1NZR9 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1SED8 SLC4A1AP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|J9NV18 SLC4A1AP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
WB|WBGene00014011 ZK632.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 8e-18
pfam0049867 pfam00498, FHA, FHA domain 8e-17
smart0024052 smart00240, FHA, Forkhead associated domain 2e-10
COG1716191 COG1716, COG1716, FOG: FHA domain [Signal transduc 3e-07
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information 
 Score = 74.7 bits (184), Expect = 8e-18
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 8/102 (7%)

Query: 2   LKSGQIVNTIDLSTRSFYCVGRE-RNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYV 60
           L          L     Y +GR+  N  + L  P+VSR HA+++Y       D   G  +
Sbjct: 7   LSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRY-------DGDGGVVL 59

Query: 61  YDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQ 102
            DLGST+GTF+N  ++ P   VR+  G ++  G+++  F  +
Sbjct: 60  IDLGSTNGTFVNGQRVSPGEPVRLRDGDVIRLGNTSISFRFE 101

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 207
KOG1881|consensus 793 100.0
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.85
KOG1882|consensus293 99.74
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.67
TIGR03354 396 VI_FHA type VI secretion system FHA domain protein 99.65
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.63
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.57
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 99.5
KOG1880|consensus 337 99.41
COG3456 430 Predicted component of the type VI protein secreti 99.32
KOG0615|consensus 475 98.3
TIGR02500 410 type_III_yscD type III secretion apparatus protein 97.93
KOG2293|consensus547 97.47
KOG0245|consensus 1221 97.46
KOG1892|consensus 1629 96.09
TIGR01663 526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 95.87
KOG0241|consensus 1714 94.26
KOG1881|consensus 793 90.85
>KOG1881|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.3e-52  Score=394.81  Aligned_cols=200  Identities=48%  Similarity=0.802  Sum_probs=176.6

Q ss_pred             CccCCeeeeEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCC---cCCCCeEEEEECCCccceeecCeEcC
Q psy2133           1 ELKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDE---KDPARGFYVYDLGSTHGTFLNRCKIK   77 (207)
Q Consensus         1 ~lK~G~ii~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~---~~~~~~~~l~Dl~StnGTfVNg~rI~   77 (207)
                      +||.|.||++..|....+|+|||.+.||+.+.||+|||+||+|||.+.+..   +..+.+|||+|||||||||+|+.|++
T Consensus       161 vlKeg~iiet~~l~~~~~~~fgr~~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~NK~rvp  240 (793)
T KOG1881|consen  161 VLKEGAIIETEDLKGAAACLFGRLGGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLNKDRVP  240 (793)
T ss_pred             hhccCceeeeeecccceeEEecccCCCccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceeccccCC
Confidence            589999999999999999999999999999999999999999999876543   34567899999999999999999999


Q ss_pred             CCceEEecCCCEEEEcCeeeEEEEeCCCCCccccccCCHHHHHHHHHH--HHHHHHHHH--HHHHHHHhhcchhhhcCCc
Q psy2133          78 PKMYVRIHVGHMLSFGSSTRFFILQGPSEDEEEESELSVSELKEQRRQ--EKEKKEREA--LEKSLEQEAKTEEEDEGIS  153 (207)
Q Consensus        78 ~~~~~~L~~Gd~I~fG~s~~~fil~~p~~~~e~es~lsv~el~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~g~~  153 (207)
                      |++|+++++|++++||+++|+|++|||.+|.+++++++++++++.|.+  +++++....  ++.-++  ++++...+||+
T Consensus       241 pk~yir~~Vg~v~~fggsTrl~i~Qgp~eD~Epe~dls~te~~e~r~~~~E~~e~~~~~~~e~r~le--~~q~~~~~g~s  318 (793)
T KOG1881|consen  241 PKVYIRDRVGHVARFGGSTRLYIFQGPEEDEEPESDLSVTELKECREKKKELSDAEVEAAAEERILE--AAQADDEEGCS  318 (793)
T ss_pred             CcchhhhhHHHHHHhcCceEEEEeeCCCcCCCchhhcCHHHHHHHHHHHHhhhHhhhhhhHHHhhHH--HHhhhhhcCCc
Confidence            999999999999999999999999999999999999999999999885  344333322  111122  56677899999


Q ss_pred             cCCCCCcccccccC--CCCCCCCCcccccccCchhhhhhhhhccCCCccce
Q psy2133         154 WGMGDDAEEETDLS--ENPYASTNNEELYLDDPKKTLRGWFDREGKGFPLF  202 (207)
Q Consensus       154 wGm~eda~ee~~~~--~np~~~~~~e~~~~~dp~k~l~~~f~~eg~~~~~~  202 (207)
                      ||||+||+|++..+  .+++++.++|++|++||||+|++||+|+|++|+|.
T Consensus       319 wGmgeDa~ed~~~e~et~~~~~~e~E~~y~qdPkk~l~~ffereg~~l~~~  369 (793)
T KOG1881|consen  319 WGMGEDADEDDADEVETDAEAMEEREATYIQDPKKALLGFFEREGEDLEYE  369 (793)
T ss_pred             ccCCcccccccccccccccccccccccccccCHHHHHHHHHHhhhhhhhhh
Confidence            99999999877554  48999999999999999999999999999999995

>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>KOG1882|consensus Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>KOG1880|consensus Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>KOG0615|consensus Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG2293|consensus Back     alignment and domain information
>KOG0245|consensus Back     alignment and domain information
>KOG1892|consensus Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>KOG0241|consensus Back     alignment and domain information
>KOG1881|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
4h87_A130 Crystal Structure Of A Fha Domain Of Kanadaptin (Sl 5e-25
3vpy_A145 Crystal Structure Of Arabidopsis Ddl Fha Domain Len 8e-10
2jpe_A140 Fha Domain Of Nipp1 Length = 140 5e-07
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap) From Homo Sapiens At 1.55 A Resolution Length = 130 Back     alignment and structure 
Iteration: 1

 Score =  110 bits (275), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/107 (51%), Positives = 71/107 (66%), Gaps = 7/107 (6%)
Query: 2   LKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKST-----FDEKDPAR 56
           LK G I+ T  L   S+   GR     + L HP+VSRYHA+LQ++++      D   P  
Sbjct: 26  LKGGTILGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGP-- 83
Query: 57  GFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQG 103
           GFY+YDLGSTHGTFLN+ +I P+ Y R+HVGH++ FG STR FILQG
Sbjct: 84  GFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQG 130
>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain Length = 145 Back     alignment and structure
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1 Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query207
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 9e-32
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 1e-22
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 3e-19
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 2e-18
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 5e-18
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 9e-18
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 4e-17
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 8e-16
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 2e-13
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 3e-12
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 6e-12
2xt9_B115 Putative signal transduction protein GARA; lyase-s 6e-12
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 1e-11
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 7e-11
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 2e-10
3po8_A100 RV0020C protein, putative uncharacterized protein 2e-10
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 3e-10
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 1e-09
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 2e-09
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 3e-09
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 1e-08
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 4e-08
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 2e-05
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 4e-05
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 2e-04
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 8e-04
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
 Score =  111 bits (279), Expect = 9e-32
 Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 2   LKSGQIVNTIDLSTRSFYCVGRERNT-HLNLLHPTVSRYHAILQYKSTFDEKDPARGFYV 60
           +K  +++  + +  + +Y  GR  +     + H + SR HA L Y          +  ++
Sbjct: 40  VKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKH------LKRVFL 93

Query: 61  YDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSE 106
            DL STHGTFL   +++P    +I +   +SFG+STR + L+   +
Sbjct: 94  IDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQ 139
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Length = 325 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Length = 158 Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 182 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Length = 124 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.97
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.91
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.9
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.89
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.88
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.87
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.87
3po8_A100 RV0020C protein, putative uncharacterized protein 99.87
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.86
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.86
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.86
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.85
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.85
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.85
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.85
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.84
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.84
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.84
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.83
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.82
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.82
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.82
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.82
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.82
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.8
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.79
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.75
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.7
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 99.67
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.63
4a0e_A123 YSCD, type III secretion protein; transport protei 99.49
3i6u_A 419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.4
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.38
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 99.22
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 99.11
1wv3_A238 Similar to DNA segregation ATPase and related prot 99.08
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 98.98
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 98.95
1wv3_A238 Similar to DNA segregation ATPase and related prot 88.17
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
Probab=99.97  E-value=9.1e-31  Score=205.83  Aligned_cols=103  Identities=51%  Similarity=0.885  Sum_probs=91.2

Q ss_pred             CccCCeeeeEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecC---CcCCCCeEEEEECCCccceeecCeEcC
Q psy2133           1 ELKSGQIVNTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFD---EKDPARGFYVYDLGSTHGTFLNRCKIK   77 (207)
Q Consensus         1 ~lK~G~ii~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~---~~~~~~~~~l~Dl~StnGTfVNg~rI~   77 (207)
                      ++|+|.+++++.|..++.++|||.++|||+|+||+|||+||+|+++....   ....++.|+|+||+|+|||||||++|.
T Consensus        25 v~k~g~~~~~~~L~~~~~~~IGR~~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~vNg~ri~  104 (130)
T 4h87_A           25 TLKGGTILGTRSLKGTSYCLFGRLSGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFLNKTRIP  104 (130)
T ss_dssp             EEETTEEEEEEECTTCSEEEEESSTTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEETTEECC
T ss_pred             EEECCeeeeeEEeCCCceEEEcCCcCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEECCEECC
Confidence            57999999999999989999999999999999999999999999863221   011357899999999999999999999


Q ss_pred             CCceEEecCCCEEEEcCeeeEEEEeC
Q psy2133          78 PKMYVRIHVGHMLSFGSSTRFFILQG  103 (207)
Q Consensus        78 ~~~~~~L~~Gd~I~fG~s~~~fil~~  103 (207)
                      +++++.|++||+|+||.+++.|+|+|
T Consensus       105 ~~~~~~L~~GD~I~~G~str~yvl~G  130 (130)
T 4h87_A          105 PRTYCRVHVGHVVRFGGSTRLFILQG  130 (130)
T ss_dssp             TTCCEECCTTCEEEETTCSEEEEEEC
T ss_pred             CCceeECCCCCEEEECCceEEEEEcC
Confidence            99999999999999999999999986
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 207
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 7e-16
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 3e-15
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 3e-11
d2g1la1102 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {H 8e-10
d2piea1127 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 6e-09
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 3e-08
d2ff4a399 b.26.1.2 (A:284-382) Probable regulatory protein E 4e-07
d2brfa1101 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosph 5e-05
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Phosphotyrosine binding domain of Rad53
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (170), Expect = 7e-16
 Identities = 20/149 (13%), Positives = 53/149 (35%), Gaps = 10/149 (6%)

Query: 2   LKSGQIVNTIDLS-TRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEK-------D 53
           L    I  ++++    + + +GR  + +  +    +SR H  +  K     K        
Sbjct: 11  LPDSIIQESLEIQQGVNPFFIGRSEDCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQ 70

Query: 54  PARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGHMLSFGSSTRFFILQGPSEDEEEESE 113
                +      T+ ++LN  ++       +  G  +          + G   +  + + 
Sbjct: 71  GLDDIWYCHT-GTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDTTG 129

Query: 114 LSVSELKEQRRQEKEKKEREALEKSLEQE 142
           L  +E     ++++   ++ A EK L ++
Sbjct: 130 L-FNEGLGMLQEQRVVLKQTAEEKDLVKK 157
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99 Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Length = 101 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query207
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.88
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.88
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.86
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.84
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.84
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.82
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.8
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.79
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.79
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.77
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.71
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.7
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: Probable regulatory protein EmbR, C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=9.5e-23  Score=151.16  Aligned_cols=82  Identities=21%  Similarity=0.325  Sum_probs=74.2

Q ss_pred             eEEEcCCCCeEEEccCCCCcEEeCCCCcCccceEEEEEeecCCcCCCCeEEEEECCCccceeecCeEcCCCceEEecCCC
Q psy2133           9 NTIDLSTRSFYCVGRERNTHLNLLHPTVSRYHAILQYKSTFDEKDPARGFYVYDLGSTHGTFLNRCKIKPKMYVRIHVGH   88 (207)
Q Consensus         9 ~~i~L~~~~~~~IGR~~~cDv~l~~psVSR~HAvI~~~~~~~~~~~~~~~~l~Dl~StnGTfVNg~rI~~~~~~~L~~Gd   88 (207)
                      .++.|.. ..++|||.+.|||+|++|+|||.||.|.+.        ++.|+|.|++|+|||||||++|..  ++.|++||
T Consensus        16 ~~~~l~~-~~~~IGR~~~~di~l~d~~VSr~Ha~i~~~--------~~~~~i~Dl~S~nGt~vNg~~i~~--~~~L~~Gd   84 (99)
T d2ff4a3          16 RGYPLQA-AATRIGRLHDNDIVLDSANVSRHHAVIVDT--------GTNYVINDLRSSNGVHVQHERIRS--AVTLNDGD   84 (99)
T ss_dssp             CEEECCS-SEEEEESSTTSSEECCCTTSCTTCEEEEEC--------SSCEEEEECSCSSCCEETTEECSS--EEEECTTC
T ss_pred             CEEEECC-CCEEEeeCcCCCEEECCccccceeEEEEEe--------CCEEEEEECCCcCCCeECCEEcCC--ceECCCCC
Confidence            3677876 578999999999999999999999999987        678999999999999999999964  57899999


Q ss_pred             EEEEcCeeeEEEE
Q psy2133          89 MLSFGSSTRFFIL  101 (207)
Q Consensus        89 ~I~fG~s~~~fil  101 (207)
                      +|+||...+.|.+
T Consensus        85 ~i~iG~~~~~f~~   97 (99)
T d2ff4a3          85 HIRICDHEFTFQI   97 (99)
T ss_dssp             EEEETTEEEEEEC
T ss_pred             EEEECCEEEEEEE
Confidence            9999999888865
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure