Psyllid ID: psy2170

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MVKKELLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKLRIIPIVA
Secondary Structure (PSIPRED)
ccccccEEEEEEEccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccEEHHHHHHHHHHHcHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEccccccccHHHHHHHcHHHHHHHHHHHHHHcccccEEEccHHHHHHHHHHccHHHHHHHcc
Coil and Loop (DISEMBL)
MVKKELLTIVFLvphshndpgwlkTFESYYHSQTRMILNNMVEKLvqhpnmtfiWSEISFFSQWWERSrklriipiva
Flexible Loop (DISEMBL)
MVKKELLTIVFlvphshndpgwLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKLRIIPIVA
Low Complexity Region (SEG)
MVKKELLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKLRIIPIVA
Disordered region (IsUnstruct)
*****LLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKLRIIPI**
Disordered Region (DISOPRED)
*****LLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKL**IPIVA
Disordered Region (DISEMBL)
MVKKELLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKLRIIPIVA
Disordered Region (DISPRO)
***KELLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKLRII****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVKKELLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKLRIIPIVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
Q8BRK9	1152	Alpha-mannosidase 2x OS=M	yes	N/A	0.730	0.049	0.614	1e-18
P49641	1150	Alpha-mannosidase 2x OS=H	yes	N/A	0.730	0.049	0.614	1e-18
Q16706	1144	Alpha-mannosidase 2 OS=Ho	no	N/A	0.730	0.049	0.614	3e-16
P28494	489	Alpha-mannosidase 2 (Frag	no	N/A	0.730	0.116	0.596	9e-16
P27046	1150	Alpha-mannosidase 2 OS=Mu	no	N/A	0.730	0.049	0.578	1e-15
Q24451	1108	Alpha-mannosidase 2 OS=Dr	no	N/A	0.871	0.061	0.492	1e-14
Q55ER0	1079	Alpha-mannosidase C OS=Di	yes	N/A	0.782	0.056	0.491	6e-12
O09159	1013	Lysosomal alpha-mannosida	no	N/A	0.743	0.057	0.409	3e-10
Q54YF7	1035	Alpha-mannosidase B OS=Di	no	N/A	0.807	0.060	0.437	5e-10
Q54YC4	1222	Alpha-mannosidase D OS=Di	no	N/A	0.807	0.051	0.412	6e-10

>sp|Q8BRK9|MA2A2_MOUSE Alpha-mannosidase 2x OS=Mus musculus GN=Man2a2 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
           VF+VPHSHNDPGW+KTF+ YY  QT+ ILN+MV KL + P   F+W+E+SFF++WW+
Sbjct: 168 VFVVPHSHNDPGWIKTFDKYYTEQTQHILNSMVSKLQEDPRRRFLWAEVSFFAKWWD 224

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 1EC: 4

>sp|P49641|MA2A2_HUMAN Alpha-mannosidase 2x OS=Homo sapiens GN=MAN2A2 PE=2 SV=3

 Score = 91.7 bits (226), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
           VF+VPHSHNDPGW+KTF+ YY  QT+ ILN+MV KL + P   F+W+E+SFF++WW+
Sbjct: 168 VFVVPHSHNDPGWIKTFDKYYTEQTQHILNSMVSKLQEDPRRRFLWAEVSFFAKWWD 224

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q16706|MA2A1_HUMAN Alpha-mannosidase 2 OS=Homo sapiens GN=MAN2A1 PE=1 SV=2

 Score = 83.6 bits (205), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
           VF+VPHSHNDPGWLKTF  Y+  +T+ I NNMV KL +     FIWSEIS+ S+WW+
Sbjct: 168 VFVVPHSHNDPGWLKTFNDYFRDKTQYIFNNMVLKLKEDSRRKFIWSEISYLSKWWD 224

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|P28494|MA2A1_RAT Alpha-mannosidase 2 (Fragment) OS=Rattus norvegicus GN=Man2a1 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
           VF+VPHSHNDPGWLKTF  Y+  +T+ I NNMV KL +  +  FIWSEIS+ ++WW+
Sbjct: 134 VFVVPHSHNDPGWLKTFNDYFRDKTQYIFNNMVLKLKEDSSRKFIWSEISYLAKWWD 190

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|P27046|MA2A1_MOUSE Alpha-mannosidase 2 OS=Mus musculus GN=Man2a1 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 44/57 (77%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
           VF+VPHSHNDPGWLKTF  Y+  +T+ I NNMV KL +  +  F+WSEIS+ ++WW+
Sbjct: 167 VFVVPHSHNDPGWLKTFNDYFRDKTQYIFNNMVLKLKEDSSRKFMWSEISYLAKWWD 223

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q24451|MAN2_DROME Alpha-mannosidase 2 OS=Drosophila melanogaster GN=alpha-Man-II PE=1 SV=2

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 52/71 (73%), Gaps = 3/71 (4%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE--- 66
           VF+VPHSHNDPGW++TFE YY   T+ IL+N +  L  +P M FIW+EIS+F++++    
Sbjct: 146 VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLG 205

Query: 67  RSRKLRIIPIV 77
            ++KL++  IV
Sbjct: 206 ENKKLQMKSIV 216

Catalyzes the first committed step in the biosynthesis of complex N-glycans. It controls conversion of high mannose to complex N-glycans; the final hydrolytic step in the N-glycan maturation pathway.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: 1

EC: 4

>sp|Q55ER0|MANC_DICDI Alpha-mannosidase C OS=Dictyostelium discoideum GN=manC PE=3 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 39/61 (63%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSR 69
          VFLVPHSH D GWLKT E YY     +ILNN++E L +  +  F W+EI +F +WW    
Sbjct: 37 VFLVPHSHCDVGWLKTVEQYYTENVTLILNNVIETLTKDKSKKFNWAEIIYFERWWNDQN 96

Query: 70 K 70
          +
Sbjct: 97 E 97

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|O09159|MA2B1_MOUSE Lysosomal alpha-mannosidase OS=Mus musculus GN=Man2b1 PE=2 SV=4

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 44/66 (66%), Gaps = 8/66 (12%)

Query: 10  VFLVPHSHNDPGWLKTFESYY--------HSQTRMILNNMVEKLVQHPNMTFIWSEISFF 61
           V L+PH+H+D GWLKT + YY        H+  + IL+++V  L++ P   FI+ E++FF
Sbjct: 65  VHLLPHTHDDVGWLKTVDQYYYGILSDVQHASVQYILDSVVSSLLEKPTRRFIYVEMAFF 124

Query: 62  SQWWER 67
           S+WW++
Sbjct: 125 SRWWKQ 130

Necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q54YF7|MANB_DICDI Alpha-mannosidase B OS=Dictyostelium discoideum GN=manB PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWW-ERS 68
           VFL+PHSH D GW++T E YY     +IL+N++  L++  +  F W+EI +F  WW E+S
Sbjct: 40  VFLIPHSHCDLGWVQTLEEYYSENVTVILDNVINTLIKDSSKKFNWAEIYYFETWWNEQS 99

Query: 69  RKLR 72
             L+
Sbjct: 100 SFLQ 103

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

>sp|Q54YC4|MAND_DICDI Alpha-mannosidase D OS=Dictyostelium discoideum GN=manD PE=3 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSR 69
           VFL+PHSH D GWL+ ++ YY++  + IL+ +V +L       F W EI FFS+WW    
Sbjct: 64  VFLIPHSHCDGGWLQDYDGYYYNIVQYILSGVVNELNLDKEKKFNWVEIGFFSRWWNDQN 123

Query: 70  KLR 72
           +++
Sbjct: 124 EIQ 126

Dictyostelium discoideum (taxid: 44689)

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 2

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
332016800	522	Alpha-mannosidase 2x [Acromyrmex echinat	0.782	0.116	0.737	2e-20
242004076	1204	alpha-mannosidase, putative [Pediculus h	0.756	0.049	0.762	4e-20
350402150	1088	PREDICTED: alpha-mannosidase 2-like, par	0.756	0.054	0.762	1e-19
340729800	1099	PREDICTED: alpha-mannosidase 2-like [Bom	0.756	0.053	0.762	1e-19
66514147	1099	PREDICTED: alpha-mannosidase 2 [Apis mel	0.756	0.053	0.762	1e-19
380020618	1099	PREDICTED: alpha-mannosidase 2-like [Api	0.756	0.053	0.762	1e-19
383853946	1098	PREDICTED: alpha-mannosidase 2 [Megachil	0.756	0.053	0.762	1e-19
307176942	1008	Alpha-mannosidase 2 [Camponotus floridan	0.756	0.058	0.745	3e-19
307194457	141	Alpha-mannosidase IIx [Harpegnathos salt	0.756	0.418	0.745	4e-19
322800155	119	hypothetical protein SINV_01395 [Solenop	0.756	0.495	0.745	5e-19

>gi|332016800|gb|EGI57621.1| Alpha-mannosidase 2x [Acromyrmex echinatior]

 Score =  102 bits (255), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 49/61 (80%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSR 69
           V LVPHSH DPGWLKTFE Y+HS TR ILNNMV KL Q PNMTFIWSE+SF S WW+  R
Sbjct: 255 VILVPHSHTDPGWLKTFEQYFHSSTRSILNNMVSKLQQWPNMTFIWSEVSFLSLWWDSKR 314

Query: 70  K 70
           +
Sbjct: 315 E 315

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004076|ref|XP_002422964.1| alpha-mannosidase, putative [Pediculus humanus corporis] gi|212505880|gb|EEB10226.1| alpha-mannosidase, putative [Pediculus humanus corporis]

 Score =  102 bits (253), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 50/59 (84%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
           V LVPHSHNDPGWLKT+E+Y+H  +R ILNNM EKL   PNMTFIWSEISFFSQWWE +
Sbjct: 157 VILVPHSHNDPGWLKTYENYFHYHSRNILNNMAEKLKVLPNMTFIWSEISFFSQWWESA 215

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402150|ref|XP_003486384.1| PREDICTED: alpha-mannosidase 2-like, partial [Bombus impatiens]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 48/59 (81%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
           V LVPHSH DPGWLKTFE Y+HS TR ILNNMV KL Q PNMTFIWSE+SF S WWE +
Sbjct: 117 VILVPHSHTDPGWLKTFEQYFHSSTRSILNNMVSKLQQWPNMTFIWSEVSFLSLWWESA 175

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729800|ref|XP_003403183.1| PREDICTED: alpha-mannosidase 2-like [Bombus terrestris]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 48/59 (81%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
           V LVPHSH DPGWLKTFE Y+HS TR ILNNMV KL Q PNMTFIWSE+SF S WWE +
Sbjct: 128 VILVPHSHTDPGWLKTFEQYFHSSTRSILNNMVSKLQQWPNMTFIWSEVSFLSLWWESA 186

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66514147|ref|XP_396290.2| PREDICTED: alpha-mannosidase 2 [Apis mellifera]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 48/59 (81%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
           V LVPHSH DPGWLKTFE Y+HS TR ILNNMV KL Q PNMTFIWSE+SF S WWE +
Sbjct: 128 VILVPHSHTDPGWLKTFEQYFHSSTRSILNNMVSKLQQWPNMTFIWSEVSFLSLWWESA 186

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020618|ref|XP_003694179.1| PREDICTED: alpha-mannosidase 2-like [Apis florea]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 48/59 (81%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
           V LVPHSH DPGWLKTFE Y+HS TR ILNNMV KL Q PNMTFIWSE+SF S WWE +
Sbjct: 128 VILVPHSHTDPGWLKTFEQYFHSSTRSILNNMVSKLQQWPNMTFIWSEVSFLSLWWESA 186

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853946|ref|XP_003702483.1| PREDICTED: alpha-mannosidase 2 [Megachile rotundata]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 48/59 (81%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
           V LVPHSH DPGWLKTFE Y+HS TR ILNNMV KL Q PNMTFIWSE+SF S WWE +
Sbjct: 128 VILVPHSHTDPGWLKTFEQYFHSSTRSILNNMVSKLQQWPNMTFIWSEVSFLSLWWESA 186

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176942|gb|EFN66248.1| Alpha-mannosidase 2 [Camponotus floridanus]

 Score = 99.4 bits (246), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 48/59 (81%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
          V LVPHSH DPGWLKTFE Y+HS TR ILNNMV KL Q PNMTFIWSE+SF S WW+ +
Sbjct: 36 VILVPHSHTDPGWLKTFEQYFHSSTRSILNNMVSKLQQWPNMTFIWSEVSFLSLWWDSA 94

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307194457|gb|EFN76755.1| Alpha-mannosidase IIx [Harpegnathos saltator]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 48/59 (81%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
          V LVPHSH DPGWLKTFE Y+HS TR ILNNMV KL Q PNMTFIWSE+SF S WW+ +
Sbjct: 1  VILVPHSHTDPGWLKTFEQYFHSSTRSILNNMVSKLQQWPNMTFIWSEVSFLSLWWDSA 59

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800155|gb|EFZ21240.1| hypothetical protein SINV_01395 [Solenopsis invicta]

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 44/59 (74%), Positives = 48/59 (81%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
          V LVPHSH DPGWLKTFE Y+HS TR ILNNMV KL Q PNMTFIWSE+SF S WW+ +
Sbjct: 1  VILVPHSHTDPGWLKTFEQYFHSSTRSILNNMVSKLQQWPNMTFIWSEVSFLSLWWDSA 59

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
UNIPROTKB|F1NXU9	929	F1NXU9 "Uncharacterized protei	0.730	0.061	0.666	2.2e-18
UNIPROTKB|E1BGJ4	1150	MAN2A2 "Uncharacterized protei	0.730	0.049	0.666	2.3e-18
UNIPROTKB|F1RMI9	1150	MAN2A2 "Uncharacterized protei	0.730	0.049	0.631	7.9e-18
UNIPROTKB|F6V049	1150	MAN2A2 "Uncharacterized protei	0.730	0.049	0.631	1e-17
UNIPROTKB|E2QT95	1153	MAN2A2 "Uncharacterized protei	0.730	0.049	0.631	1e-17
UNIPROTKB|H0YNG5	938	MAN2A2 "Mannosidase, alpha, cl	0.730	0.060	0.614	1.6e-17
UNIPROTKB|P49641	1150	MAN2A2 "Alpha-mannosidase 2x"	0.730	0.049	0.614	2.1e-17
MGI|MGI:2150656	1152	Man2a2 "mannosidase 2, alpha 2	0.730	0.049	0.614	2.1e-17
RGD|1310238	1164	Man2a2 "mannosidase, alpha, cl	0.730	0.048	0.614	2.1e-17
UNIPROTKB|F1N7T2	1145	MAN2A1 "Uncharacterized protei	0.730	0.049	0.649	2.7e-17

UNIPROTKB|F1NXU9 F1NXU9 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 234 (87.4 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 38/57 (66%), Positives = 48/57 (84%)

Query:    10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
             VF+VPHSHNDPGW+KTF+ YY+ QT+ ILN+MV K+ + P   FIWSEISFFS+WW+
Sbjct:    49 VFVVPHSHNDPGWIKTFDKYYYDQTQHILNSMVLKMQEDPRRRFIWSEISFFSKWWD 105

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

UNIPROTKB|E1BGJ4 MAN2A2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 235 (87.8 bits), Expect = 2.3e-18, P = 2.3e-18
 Identities = 38/57 (66%), Positives = 47/57 (82%)

Query:    10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
             VF+VPHSHNDPGWLKTF+ YY  QT+ ILNNMV KL + P   FIW+E+SFF++WW+
Sbjct:   168 VFVVPHSHNDPGWLKTFDKYYTEQTQHILNNMVSKLQEDPRRRFIWAEVSFFAKWWD 224

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

UNIPROTKB|F1RMI9 MAN2A2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 230 (86.0 bits), Expect = 7.9e-18, P = 7.9e-18
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query:    10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
             VF+VPHSHNDPGWLKTF+ YY  QT+ ILNNM+ KL + P   F+W+E+SFF++WW+
Sbjct:   168 VFVVPHSHNDPGWLKTFDKYYTEQTQHILNNMLSKLQEDPRRRFLWAEVSFFAKWWD 224

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

UNIPROTKB|F6V049 MAN2A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 229 (85.7 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query:    10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
             VF+VPHSHNDPGW+KTF+ YY  QT+ ILN+MV KL + P   F+W+E+SFF++WWE
Sbjct:   168 VFVVPHSHNDPGWIKTFDKYYTEQTQHILNSMVSKLQEDPRRRFLWAEVSFFAKWWE 224

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

UNIPROTKB|E2QT95 MAN2A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 229 (85.7 bits), Expect = 1.0e-17, P = 1.0e-17
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query:    10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
             VF+VPHSHNDPGW+KTF+ YY  QT+ ILN+MV KL + P   F+W+E+SFF++WWE
Sbjct:   168 VFVVPHSHNDPGWIKTFDKYYTEQTQHILNSMVSKLQEDPRRRFLWAEVSFFAKWWE 224

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

UNIPROTKB|H0YNG5 MAN2A2 "Mannosidase, alpha, class 2A, member 2, isoform CRA_d" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query:    10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
             VF+VPHSHNDPGW+KTF+ YY  QT+ ILN+MV KL + P   F+W+E+SFF++WW+
Sbjct:   168 VFVVPHSHNDPGWIKTFDKYYTEQTQHILNSMVSKLQEDPRRRFLWAEVSFFAKWWD 224

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

UNIPROTKB|P49641 MAN2A2 "Alpha-mannosidase 2x" [Homo sapiens (taxid:9606)]

 Score = 226 (84.6 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query:    10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
             VF+VPHSHNDPGW+KTF+ YY  QT+ ILN+MV KL + P   F+W+E+SFF++WW+
Sbjct:   168 VFVVPHSHNDPGWIKTFDKYYTEQTQHILNSMVSKLQEDPRRRFLWAEVSFFAKWWD 224

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=NAS

GO:0000139 "Golgi membrane" evidence=NAS;TAS

GO:0005975 "carbohydrate metabolic process" evidence=NAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

MGI|MGI:2150656 Man2a2 "mannosidase 2, alpha 2" [Mus musculus (taxid:10090)]

 Score = 226 (84.6 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query:    10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
             VF+VPHSHNDPGW+KTF+ YY  QT+ ILN+MV KL + P   F+W+E+SFF++WW+
Sbjct:   168 VFVVPHSHNDPGWIKTFDKYYTEQTQHILNSMVSKLQEDPRRRFLWAEVSFFAKWWD 224

GO:0003824 "catalytic activity" evidence=IEA

GO:0004553 "hydrolase activity, hydrolyzing O-glycosyl compounds" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0004572 "mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015923 "mannosidase activity" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1310238 Man2a2 "mannosidase, alpha, class 2A, member 2" [Rattus norvegicus (taxid:10116)]

 Score = 226 (84.6 bits), Expect = 2.1e-17, P = 2.1e-17
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query:    10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
             VF+VPHSHNDPGW+KTF+ YY  QT+ ILN+MV KL + P   F+W+E+SFF++WW+
Sbjct:   168 VFVVPHSHNDPGWIKTFDKYYTEQTQHILNSMVSKLQEDPRRRFLWAEVSFFAKWWD 224

GO:0004559 "alpha-mannosidase activity" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0015923 "mannosidase activity" evidence=ISO

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=ISO

GO:0030246 "carbohydrate binding" evidence=IEA

UNIPROTKB|F1N7T2 MAN2A1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 225 (84.3 bits), Expect = 2.7e-17, P = 2.7e-17
 Identities = 37/57 (64%), Positives = 45/57 (78%)

Query:    10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
             VF+VPHSHNDPGWLKTF+ Y+  +T+ I NNMV KL + P   FIWSEIS+ S+WWE
Sbjct:   169 VFVVPHSHNDPGWLKTFDDYFREKTQYIFNNMVVKLKEDPRRKFIWSEISYLSKWWE 225

GO:0048286 "lung alveolus development" evidence=IEA

GO:0016799 "hydrolase activity, hydrolyzing N-glycosyl compounds" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0007033 "vacuole organization" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006013 "mannose metabolic process" evidence=IEA

GO:0004559 "alpha-mannosidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BRK9	MA2A2_MOUSE	3, ., 2, ., 1, ., 1, 1, 4	0.6140	0.7307	0.0494	yes	N/A
P49641	MA2A2_HUMAN	3, ., 2, ., 1, ., 1, 1, 4	0.6140	0.7307	0.0495	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	78
cd10809	340	cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal	9e-34
cd00451	258	cd00451, GH38N_AMII_euk, N-terminal catalytic doma	2e-26
cd11667	344	cd11667, GH38N_Man2A2, N-terminal catalytic domain	5e-25
cd11666	344	cd11666, GH38N_Man2A1, N-terminal catalytic domain	6e-24
PLN02701	1050	PLN02701, PLN02701, alpha-mannosidase	1e-21
pfam01074	269	pfam01074, Glyco_hydro_38, Glycosyl hydrolases fam	4e-19
cd10810	278	cd10810, GH38N_AMII_LAM_like, N-terminal catalytic	2e-17
cd10786	251	cd10786, GH38N_AMII_like, N-terminal catalytic dom	7e-16
cd10811	326	cd10811, GH38N_AMII_Epman_like, N-terminal catalyt	2e-08
cd10785	203	cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain	2e-06

>gnl|CDD|212120 cd10809, GH38N_AMII_GMII_SfManIII_like, N-terminal catalytic domain of Golgi alpha-mannosidase II, Spodoptera frugiperda Sf9 alpha-mannosidase III, and similar proteins; glycoside hydrolase family 38 (GH38)

 Score =  117 bits (295), Expect = 9e-34
 Identities = 38/58 (65%), Positives = 48/58 (82%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWER 67
          VF+VPHSHNDPGW+KTFE YY  QT+ IL+NMV+KL ++P M FIW+EISF  +WW+ 
Sbjct: 4  VFVVPHSHNDPGWIKTFEEYYQDQTKHILDNMVDKLSKNPKMKFIWAEISFLERWWDD 61

This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. This subfamily also includes human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII, and is thought to also function in the N-glycosylation pathway. Also found in this subfamily is class II alpha-mannosidase encoded by Spodoptera frugiperda Sf9 cell. This alpha-mannosidase is an integral membrane glycoprotein localized in the Golgi apparatus. It shows high sequence homology with mammalian Golgi alpha-mannosidase II(GMII). It can hydrolyze p-nitrophenyl alpha-D-mannopyranoside (pNP-alpha-Man), and it is inhibited by swainsonine. However, the Sf9 enzyme is stimulated by cobalt and can hydrolyze (Man)5(GlcNAc)2 to (Man)3(GlcNAc)2, but it cannot hydrolyze GlcNAc(Man)5(GlcNAc)2, which is distinct from that of GMII. Thus, this enzyme has been designated as Sf9 alpha-mannosidase III (SfManIII). It probably functions in an alternate N-glycan processing pathway in Sf9 cells. Length = 340

>gnl|CDD|212095 cd00451, GH38N_AMII_euk, N-terminal catalytic domain of eukaryotic class II alpha-mannosidases; glycoside hydrolase family 38 (GH38)

 Score = 96.5 bits (241), Expect = 2e-26
 Identities = 29/59 (49%), Positives = 39/59 (66%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
          V L+PHSH D GWLKTF+ YY+   + IL+++V+ L   P   FIW+EI F  +WWE  
Sbjct: 3  VHLIPHSHCDVGWLKTFDEYYNGDVKSILDSVVKALNNDPERKFIWAEIGFLERWWEDQ 61

The family corresponds to a group of eukaryotic class II alpha-mannosidases (AlphaMII), which contain Golgi alpha-mannosidases II (GMII), the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), the noval core-specific lysosomal alpha 1,6-mannosidases (Epman, MAN2B2), and similar proteins. GMII catalyzes the hydrolysis of the terminal both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2 (GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. LAM is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. Different from LAM, Epman can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 258

>gnl|CDD|212132 cd11667, GH38N_Man2A2, N-terminal catalytic domain of Golgi alpha-mannosidase IIx, and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 94.3 bits (234), Expect = 5e-25
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
          VF+VPHSHNDPGW+KTF+ YY+ QT+ ILN+MV KL + P   FIWSEISFFS+WW+
Sbjct: 4  VFVVPHSHNDPGWIKTFDKYYYDQTQHILNSMVVKLQEDPRRRFIWSEISFFSKWWD 60

This subfamily is represented by human alpha-mannosidase 2x (MX, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A2). MX is enzymatically and functionally very similar to GMII (found in another subfamily), and as an isoenzyme of GMII. It is thought to also function in the N-glycosylation pathway. MX specifically hydrolyzes the same oligosaccharide substrate as does MII. It specifically removes two mannosyl residues from GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine). Length = 344

>gnl|CDD|212131 cd11666, GH38N_Man2A1, N-terminal catalytic domain of Golgi alpha-mannosidase II and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 91.6 bits (227), Expect = 6e-24
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
          VF+VPHSHNDPGWLKTF+ Y+  QT+ ILNNMV KL +     FIWSEIS+F++WW+
Sbjct: 4  VFVVPHSHNDPGWLKTFDDYFRDQTQHILNNMVLKLKEDSRRKFIWSEISYFAKWWD 60

This subfamily is represented by Golgi alpha-mannosidase II (GMII, also known as mannosyl-oligosaccharide 1,3- 1,6-alpha mannosidase, EC 3.2.1.114, Man2A1), a monomeric, membrane-anchored class II alpha-mannosidase existing in the Golgi apparatus of eukaryotes. GMII plays a key role in the N-glycosylation pathway. It catalyzes the hydrolysis of the terminal of both alpha-1,3-linked and alpha-1,6-linked mannoses from the high-mannose oligosaccharide GlcNAc(Man)5(GlcNAc)2 to yield GlcNAc(Man)3(GlcNAc)2(GlcNAc, N-acetylglucosmine), which is the committed step of complex N-glycan synthesis. GMII is activated by zinc or cobalt ions and is strongly inhibited by swainsonine. Inhibition of GMII provides a route to block cancer-induced changes in cell surface oligosaccharide structures. GMII has a pH optimum of 5.5-6.0, which is intermediate between those of acidic (lysosomal alpha-mannosidase) and neutral (ER/cytosolic alpha-mannosidase) enzymes. GMII is a retaining glycosyl hydrolase of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 344

>gnl|CDD|178304 PLN02701, PLN02701, alpha-mannosidase

 Score = 86.4 bits (214), Expect = 1e-21
 Identities = 31/56 (55%), Positives = 40/56 (71%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWW 65
          VF+VPHSHNDPGW+ T E YY  Q+R IL+ +VE L + P   FIW E+S+  +WW
Sbjct: 42 VFVVPHSHNDPGWILTVEEYYQEQSRHILDTIVESLSKDPRRKFIWEEMSYLERWW 97

Length = 1050

>gnl|CDD|216284 pfam01074, Glyco_hydro_38, Glycosyl hydrolases family 38 N-terminal domain

 Score = 77.6 bits (192), Expect = 4e-19
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWER 67
          V LV HSH D GWL T +     + +   +N+++ L ++P   FI SE  F+  WWE 
Sbjct: 2  VHLVGHSHIDVGWLWTVDET-RRKVQRTFSNVLKLLDRYPEFRFIQSEAQFYEWWWED 58

Glycosyl hydrolases are key enzymes of carbohydrate metabolism. Length = 269

>gnl|CDD|212121 cd10810, GH38N_AMII_LAM_like, N-terminal catalytic domain of lysosomal alpha-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 73.4 bits (181), Expect = 2e-17
 Identities = 29/66 (43%), Positives = 46/66 (69%), Gaps = 8/66 (12%)

Query: 10 VFLVPHSHNDPGWLKTFESYY--------HSQTRMILNNMVEKLVQHPNMTFIWSEISFF 61
          V LVPH+H+D GWLKT + YY        H+  + IL++++E+L+++P+  FI+ EI+FF
Sbjct: 3  VHLVPHTHDDVGWLKTVDQYYYGSNNSIQHAGVQYILDSVIEELLKNPDRKFIYVEIAFF 62

Query: 62 SQWWER 67
          S+WW  
Sbjct: 63 SRWWRE 68

The subfamily is represented by lysosomal alpha-mannosidase (LAM, Man2B1, EC 3.2.1.114), which is a broad specificity exoglycosidase hydrolyzing all known alpha 1,2-, alpha 1,3-, and alpha 1,6-mannosidic linkages from numerous high mannose type oligosaccharides. LAM is expressed in all tissues and in many species. In mammals, the absence of LAM can cause the autosomal recessive disease alpha-mannosidosis. LAM has an acidic pH optimum at 4.0-4.5. It is stimulated by zinc ion and is inhibited by cobalt ion and plant alkaloids, such as swainsonine (SW). LAM catalyzes hydrolysis by a double displacement mechanism in which a glycosyl-enzyme intermediate is formed and hydrolyzed via oxacarbenium ion-like transition states. A carboxylic acid in the active site acts as the catalytic nucleophile in the formation of the covalent intermediate while a second carboxylic acid acts as a general acid catalyst. The same residue is thought to assist in the hydrolysis (deglycosylation) step, this time acting as a general base. Length = 278

>gnl|CDD|212098 cd10786, GH38N_AMII_like, N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 68.6 bits (168), Expect = 7e-16
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSR 69
          V LVPHSH D GWL+TFE YY    + IL+  +  L  +P   F+  E+    ++W+   
Sbjct: 2  VHLVPHSHYDVGWLQTFEQYYQINFKAILDKALRLLDANPEYKFLIEEVILLERYWDVRP 61

Query: 70 KLR 72
           L+
Sbjct: 62 DLK 64

Alpha-mannosidases (EC 3.2.1.24) are extensively found in eukaryotes and play important roles in the processing of newly formed N-glycans and in degradation of mature glycoproteins. A deficiency of this enzyme causes the lysosomal storage disease alpha-mannosidosis. Many bacterial and archaeal species also possess putative alpha-mannosidases, but their activity and specificity is largely unknown. Based on different functional characteristics and sequence homology, alpha-mannosidases have been organized into two classes (class I, belonging to glycoside hydrolase family 47, and class II, belonging to glycoside hydrolase family 38). Members of this family corresponds to class II alpha-mannosidases (alphaMII), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst. Length = 251

>gnl|CDD|212122 cd10811, GH38N_AMII_Epman_like, N-terminal catalytic domain of mammalian core-specific lysosomal alpha 1,6-mannosidase and similar proteins; glycoside hydrolase family 38 (GH38)

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 20/57 (35%), Positives = 32/57 (56%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
           F++PHSH D GW+ T +   H+    +  ++VE+L++     FI  E  FF  WW+
Sbjct: 3  AFVIPHSHMDVGWVYTVQESMHAYAANVYTSVVEELMRGKQRRFIAVEQEFFRLWWD 59

The subfamily is represented by a novel human core-specific lysosomal alpha 1,6-mannosidase (Epman, Man2B2) and similar proteins. Although it was previously named as epididymal alpha-mannosidase, Epman has a broadly distributed transcript expression profile. Different from the major broad specificity lysosomal alpha-mannosidases (LAM, MAN2B1), Epman is not associated with genetic alpha-mannosidosis that is caused by the absence of LAM. Furthermore, Epman has unique substrate specificity. It can efficiently cleave only the alpha 1,6-linked mannose residue from (Man)3GlcNAc, but not (Man)3(GlcNAc)2 or other larger high mannose oligosaccharides, in the core of N-linked glycans. In contrast, the major LAM can cleave all of the alpha-linked mannose residues from high mannose oligosaccharides except the core alpha 1,6-linked mannose residue. Moreover, it is suggested that the catalytic activity of Epman is dependent on prior action by di-N-acetyl-chitobiase (chitobiase), which indicates there is a functional cooperation between these two enzymes for the full and efficient catabolism of mammalian lysosomal N-glycan core structures. Epman has an acidic pH optimum. It is strongly stimulated by cobalt or zinc ions and strongly inhibited by furanose analogues swainsonine (SW) and 1,4-dideoxy-1,4-imino-d-mannitol (DIM). Length = 326

>gnl|CDD|212097 cd10785, GH38-57_N_LamB_YdjC_SF, Catalytic domain of glycoside hydrolase (GH) families 38 and 57, lactam utilization protein LamB/YcsF family proteins, YdjC-family proteins, and similar proteins

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 11 FLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFF 61
          F+  HSHN   W++TFE +Y   T+     ++    ++  M+F  + IS+ 
Sbjct: 1  FINAHSHNPYVWIQTFEEWYFEATKATYIPLLMHFHRNFEMSFNIAPISYE 51

The superfamily possesses strong sequence similarities across a wide range of all three kingdoms of life. It mainly includes four families, glycoside hydrolases family 38 (GH38), heat stable retaining glycoside hydrolases family 57 (GH57), lactam utilization protein LamB/YcsF family, and YdjC-family. The GH38 family corresponds to class II alpha-mannosidases (alphaMII, EC 3.2.1.24), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides by employing a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. GH57 is a purely prokaryotic family with the majority of thermostable enzymes from extremophiles (many of them are archaeal hyperthermophiles), which exhibit the enzyme specificities of alpha-amylase (EC 3.2.1.1), 4-alpha-glucanotransferase (EC 2.4.1.25), amylopullulanase (EC 3.2.1.1/41), and alpha-galactosidase (EC 3.2.1.22). This family also includes many hypothetical proteins with uncharacterized activity and specificity. GH57 cleaves alpha-glycosidic bond by employing a retaining mechanism, which involves a glycosyl-enzyme intermediate, allowing transglycosylation. Although the exact molecular function of LamB/YcsF family and YdjC-family remains unclear, they show high sequence and structure homology to the members of GH38 and GH57. Their catalytic domains adopt a similar parallel 7-stranded beta/alpha barrel, which is remotely related to catalytic NodB homology domain of the carbohydrate esterase 4 superfamily. Length = 203

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
KOG1959|consensus	996		99.93
PLN02701	1050	alpha-mannosidase	99.9
KOG1958|consensus	1129		99.89
PF01074	275	Glyco_hydro_38: Glycosyl hydrolases family 38 N-te	99.79
PRK09819	875	alpha-mannosidase; Provisional	99.48
COG0383	943	AMS1 Alpha-mannosidase [Carbohydrate transport and	95.98

>KOG1959|consensus

Probab=99.93  E-value=1.5e-26  Score=192.27  Aligned_cols=66  Identities=44%  Similarity=0.955  Sum_probs=62.3

Q ss_pred             cceEEEeeCccCCchhhhhHHHHHH--------HhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhccccc
Q psy2170           7 LTIVFLVPHSHNDPGWLKTFESYYH--------SQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKLR   72 (78)
Q Consensus         7 ~~~VhlVPHSH~D~GWl~T~eeYy~--------~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~~~   72 (78)
                      +.+||+|||||+|.||++|+|+||.        ..|++|||+|+++|.+||+||||++|++||.|||++|+...
T Consensus        36 ~invHlVPHSHDDVGWLKTVDQyy~G~~n~Iq~AgVqyIldSVV~eLl~dp~RRFI~VE~aFF~rWW~~qS~~~  109 (996)
T KOG1959|consen   36 MINVHLVPHSHDDVGWLKTVDQYYYGSKNKIQHAGVQYILDSVVEELLKDPNRRFIYVETAFFARWWNEQSETQ  109 (996)
T ss_pred             eeEEEecCCccCccceeeeehhheecCCcccchhhHHHHHHHHHHHHhcCCccceehhhHHHHHHHHHhcCHHH
Confidence            5789999999999999999999999        45999999999999999999999999999999999998764

>PLN02701 alpha-mannosidase

Probab=99.90  E-value=3.1e-24  Score=181.10  Aligned_cols=65  Identities=48%  Similarity=1.031  Sum_probs=62.1

Q ss_pred             cceEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhcccc
Q psy2170           7 LTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKL   71 (78)
Q Consensus         7 ~~~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~~   71 (78)
                      +++||+|||||||+||++|+|+||...++.|+|+|++.|++||+|||+|+|++||++||++++++
T Consensus        39 ~l~VhlVpHSH~D~gWl~T~~eyy~~~~~~ild~vv~~L~~dp~rkFi~~E~~fl~~Ww~~~~pe  103 (1050)
T PLN02701         39 KLKVFVVPHSHNDPGWILTVEEYYQEQSRHILDTIVESLSKDPRRKFIWEEMSYLERWWRDASPS  103 (1050)
T ss_pred             ceEEEEeCCCCCCHHHcCcHHHHHHHHHHHHHHHHHHHHHhCcCcceeeccHHHHHHHHHhcCHH
Confidence            57899999999999999999999999999999999999999999999999999999999887664

>KOG1958|consensus

Probab=99.89  E-value=9.4e-24  Score=176.80  Aligned_cols=69  Identities=61%  Similarity=1.176  Sum_probs=64.1

Q ss_pred             cccccceEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhcccc
Q psy2170           3 KKELLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKL   71 (78)
Q Consensus         3 ~~~~~~~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~~   71 (78)
                      .++..++|++|||||+|+||++||++||..+.++||++++..|.+||++||||+||+||++||+.++..
T Consensus       158 ~~~~~LkvfVvPHSHnDPGW~~Tf~~Yy~~~tr~Il~~~v~~L~e~~~~~FIwaEiS~~~~ww~~~~~~  226 (1129)
T KOG1958|consen  158 DKEPFLKVFVVPHSHNDPGWIKTFEEYYQRQTRHILNNMVNKLSEDPRMKFIWAEISFLERWWDDASPT  226 (1129)
T ss_pred             ccccceEEEEeeccCCCcchhhhHHHHHHHHHHHHHHHHHHHhhhCcccchhhhhHHHHHHhhhhcChH
Confidence            445568899999999999999999999999999999999999999999999999999999999887643

>PF01074 Glyco_hydro_38: Glycosyl hydrolases family 38 N-terminal domain; InterPro: IPR000602 O-Glycosyl hydrolases 3

Probab=99.79  E-value=7.7e-20  Score=131.85  Aligned_cols=63  Identities=32%  Similarity=0.606  Sum_probs=52.9

Q ss_pred             eEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhccccc
Q psy2170           9 IVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKLR   72 (78)
Q Consensus         9 ~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~~~   72 (78)
                      +||+|||||+|+||+.|+++| ...+.++++++++.|++||++||+++|+.+|+.||+.++..+
T Consensus         1 ~v~~i~HsH~D~~W~~t~~~~-~~~~~~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~~p~~~   63 (275)
T PF01074_consen    1 TVHVIPHSHWDRGWLWTFEEY-RRYLVNILDSVLDLLEEDPDFRFIDGQTAYLEDYLEDAPEEF   63 (275)
T ss_dssp             EEEEEEEEB--SSSSS-HHHH-HHHHHHHHHHHHHHHHH-TT--EECTBCHHHHHHHHCSGHHH
T ss_pred             CEEEccccccchhhcccHHHH-HHHHHHHHHHHHHHHHhCCcceEeechhHHHHHHHHhCCHHH
Confidence            599999999999999999999 568889999999999999999999999999999999877653

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 38 GH38 from CAZY comprises enzymes with only one known activity; alpha-mannosidase (3.2.1.24 from EC) (3.2.1.114 from EC). Lysosomal alpha-mannosidase is necessary for the catabolism of N-linked carbohydrates released during glycoprotein turnover. The enzyme catalyses the hydrolysis of terminal, non-reducing alpha-D-mannose residues in alpha-D-mannosides, and can cleave all known types of alpha-mannosidic linkages. Defects in the gene cause lysosomal alpha-mannosidosis (AM), a lysosomal storage disease characterised by the accumulation of unbranched oligo-saccharide chains.; GO: 0004559 alpha-mannosidase activity, 0005975 carbohydrate metabolic process; PDB: 2WYI_A 2WYH_A 1O7D_A 3CZN_A 2FYV_A 3D50_A 3EJU_A 3EJS_A 3DX3_A 3BVX_A ....

>PRK09819 alpha-mannosidase; Provisional

Probab=99.48  E-value=5.7e-14  Score=116.41  Aligned_cols=65  Identities=18%  Similarity=0.250  Sum_probs=56.5

Q ss_pred             ccceEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEE--hhhHHHHHHHHhhcccc
Q psy2170           6 LLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFI--WSEISFFSQWWERSRKL   71 (78)
Q Consensus         6 ~~~~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~--~~Ei~ff~~Ww~~q~~~   71 (78)
                      |+++||+|||||+|+||+.|+++... .+...+++++..|+++|+++|+  .+++++|+.||+..+..
T Consensus         2 ~~~~v~~v~HtH~D~~Wl~~~~~~~~-~~~~~~~~vl~lle~~p~~~f~~~d~q~~~l~~~~~~~Pe~   68 (875)
T PRK09819          2 AKSKVHIVPHMHWDREWYFTTERSRI-LLVNNMEEILDRLEQDNDYKYYVLDGQTSLLEDYLAVKPED   68 (875)
T ss_pred             CceEEEEeCCCCCChhhcCChHHhHH-HHHHHHHHHHHHHHhCCCcceEEEchhHHHHHHHHHhChHH
Confidence            45679999999999999999999976 6668999999999999999984  57999999999655443

>COG0383 AMS1 Alpha-mannosidase [Carbohydrate transport and metabolism]

Probab=95.98  E-value=0.00089  Score=57.45  Aligned_cols=40  Identities=30%  Similarity=0.429  Sum_probs=35.1

Q ss_pred             eEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCC
Q psy2170           9 IVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHP   49 (78)
Q Consensus         9 ~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp   49 (78)
                      .+|+++|||||++|+.+.+.+..... ..++++++.++++|
T Consensus         5 ~~~ii~~~~wdrew~~~~e~~~~~~~-~~~~~i~~~~~~~~   44 (943)
T COG0383           5 KVHIISHSHWDREWYFTSESHRILLD-ELFEEIIELLQKDP   44 (943)
T ss_pred             ccccchhhhhhhhceeeccceEeech-hhhhhhhhccccCc
Confidence            35999999999999999999977554 55999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	78
1ps3_A	1045	Golgi Alpha-mannosidase Ii In Complex With Kifunens		7e-16
3dx3_A	1045	Golgi Alpha-Mannosidase Ii In Complex With Mannosta		8e-16
1hxk_A	1015	Golgi Alpha-Mannosidase Ii In Complex With Deoxyman		8e-16
3cv5_A	1045	Golgi Mannosidase Ii D204a Catalytic Nucleophile Mu		8e-16
1qwn_A	1045	Golgi Alpha-Mannosidase Ii Covalent Intermediate Co		8e-16
1qwu_A	1045	Golgi Alpha-Mannosidase Ii D341n Mutant Complex Wit		8e-16
1hty_A	1015	Golgi Alpha-Mannosidase Ii Length = 1015		3e-15
1o7d_A	298	The Structure Of The Bovine Lysosomal A-Mannosidase		9e-11

>pdb|1PS3|A Chain A, Golgi Alpha-mannosidase Ii In Complex With Kifunensine Length = 1045

Iteration: 1
 Score = 78.6 bits (192), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE--- 66
           VF+VPHSHNDPGW++TFE YY   T+ IL+N +  L  +P M FIW+EIS+F++++    
Sbjct: 83  VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLG 142
Query: 67  RSRKLRIIPIV 77
            ++KL++  IV
Sbjct: 143 ENKKLQMKSIV 153

>pdb|3DX3|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Mannostatin Analog (1r,2r, 3s,4r,5r)-5-Aminocyclopentane-1,2,3,4-Tetraol Length = 1045

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE--- 66
           VF+VPHSHNDPGW++TFE YY   T+ IL+N +  L  +P M FIW+EIS+F++++    
Sbjct: 83  VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLG 142
Query: 67  RSRKLRIIPIV 77
            ++KL++  IV
Sbjct: 143 ENKKLQMKSIV 153

>pdb|1HXK|A Chain A, Golgi Alpha-Mannosidase Ii In Complex With Deoxymannojirimicin Length = 1015

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE--- 66
           VF+VPHSHNDPGW++TFE YY   T+ IL+N +  L  +P M FIW+EIS+F++++    
Sbjct: 53  VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLG 112
Query: 67  RSRKLRIIPIV 77
            ++KL++  IV
Sbjct: 113 ENKKLQMKSIV 123

>pdb|3CV5|A Chain A, Golgi Mannosidase Ii D204a Catalytic Nucleophile Mutant Complex With 3alpha,6alpha-Mannopentaose Length = 1045

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE--- 66
           VF+VPHSHNDPGW++TFE YY   T+ IL+N +  L  +P M FIW+EIS+F++++    
Sbjct: 83  VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLG 142
Query: 67  RSRKLRIIPIV 77
            ++KL++  IV
Sbjct: 143 ENKKLQMKSIV 153

>pdb|1QWN|A Chain A, Golgi Alpha-Mannosidase Ii Covalent Intermediate Complex With 5- Fluoro-Gulosyl-Fluoride Length = 1045

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE--- 66
           VF+VPHSHNDPGW++TFE YY   T+ IL+N +  L  +P M FIW+EIS+F++++    
Sbjct: 83  VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLG 142
Query: 67  RSRKLRIIPIV 77
            ++KL++  IV
Sbjct: 143 ENKKLQMKSIV 153

>pdb|1QWU|A Chain A, Golgi Alpha-Mannosidase Ii D341n Mutant Complex With 5-F-Guloside Length = 1045

Iteration: 1
 Score = 78.6 bits (192), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 52/71 (73%), Gaps = 3/71 (4%)
Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE--- 66
           VF+VPHSHNDPGW++TFE YY   T+ IL+N +  L  +P M FIW+EIS+F++++    
Sbjct: 83  VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLG 142
Query: 67  RSRKLRIIPIV 77
            ++KL++  IV
Sbjct: 143 ENKKLQMKSIV 153

>pdb|1HTY|A Chain A, Golgi Alpha-Mannosidase Ii Length = 1015

Iteration: 1
 Score = 76.6 bits (187), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/71 (47%), Positives = 50/71 (70%), Gaps = 3/71 (4%)
Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE--- 66
           VF+VPHSHNDPGW++TFE YY   T+ IL+N +  L  +P   FIW+EIS+F++++    
Sbjct: 53  VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEXKFIWAEISYFARFYHDLG 112
Query: 67  RSRKLRIIPIV 77
            ++KL+   IV
Sbjct: 113 ENKKLQXKSIV 123

>pdb|1O7D|A Chain A, The Structure Of The Bovine Lysosomal A-Mannosidase Suggests A Novel Mechanism For Low Ph Activation Length = 298

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 48/74 (64%), Gaps = 9/74 (12%)
Query: 2  VKKELLTIVFLVPHSHNDPGWLKTFESYYH--------SQTRMILNNMVEKLVQHPNMTF 53
          VK ++L  V LVPH+H+D GWLKT + Y++        +  + IL++++  L+ +P   F
Sbjct: 9  VKPDMLN-VHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRF 67
Query: 54 IWSEISFFSQWWER 67
          I+ EI+FFS+WW +
Sbjct: 68 IYVEIAFFSRWWRQ 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
3bvx_A	1045	Alpha-mannosidase 2; family 38 glycoysl hydrolase,	4e-23
1o7d_A	298	Lysosomal alpha-mannosidase; hydrolase, glycosyl h	3e-18
2wyh_A	923	Alpha-mannosidase; hydrolase, glycosidase, glycosi	4e-12
3lvt_A	899	Glycosyl hydrolase, family 38; PSI, MCSG, structur	3e-11

>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ... Length = 1045

 Score = 90.0 bits (222), Expect = 4e-23
 Identities = 31/57 (54%), Positives = 44/57 (77%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWE 66
           VF+VPHSHNDPGW++TFE YY   T+ IL+N +  L  +P M FIW+EIS+F++++ 
Sbjct: 83  VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYH 139

>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1 Length = 298

 Score = 75.1 bits (184), Expect = 3e-18
 Identities = 26/66 (39%), Positives = 42/66 (63%), Gaps = 8/66 (12%)

Query: 10 VFLVPHSHNDPGWLKTFESYY--------HSQTRMILNNMVEKLVQHPNMTFIWSEISFF 61
          V LVPH+H+D GWLKT + Y+         +  + IL++++  L+ +P   FI+ EI+FF
Sbjct: 16 VHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRFIYVEIAFF 75

Query: 62 SQWWER 67
          S+WW +
Sbjct: 76 SRWWRQ 81

>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A* Length = 923

 Score = 58.7 bits (141), Expect = 4e-12
 Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEI-SFFSQWWERS 68
          V ++ HSH D  W   +E ++      ++++++E     P+      +  +     + + 
Sbjct: 28 VHIISHSHWDREWYMAYEQHHMRLIN-LIDDLLEVFQTDPDFHSFHLDGQTIILDDYLKV 86

Query: 69 R 69
          R
Sbjct: 87 R 87

>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis} Length = 899

 Score = 56.4 bits (135), Expect = 3e-11
 Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 10 VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEI-SFFSQWWERS 68
          V++V HSH D  W   +E ++      +++N+++ +   P       +  +     + + 
Sbjct: 9  VYIVSHSHWDREWYLPYEEHHMRLIE-LVDNVLDLIENDPEFNSFHLDGQTIILDDYLQV 67

Query: 69 R 69
          R
Sbjct: 68 R 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
1o7d_A	298	Lysosomal alpha-mannosidase; hydrolase, glycosyl h	99.81
3bvx_A	1045	Alpha-mannosidase 2; family 38 glycoysl hydrolase,	99.78
2wyh_A	923	Alpha-mannosidase; hydrolase, glycosidase, glycosi	99.67
3lvt_A	899	Glycosyl hydrolase, family 38; PSI, MCSG, structur	99.64

>1o7d_A Lysosomal alpha-mannosidase; hydrolase, glycosyl hydrolase family 38; HET: NAG BMA MAN NDG; 2.70A {Bos taurus} SCOP: c.6.2.1

Probab=99.81  E-value=1.3e-20  Score=139.58  Aligned_cols=66  Identities=39%  Similarity=0.888  Sum_probs=60.6

Q ss_pred             ccceEEEeeCccCCchhhhhHHHHHHH--------hHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhcccc
Q psy2170           6 LLTIVFLVPHSHNDPGWLKTFESYYHS--------QTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKL   71 (78)
Q Consensus         6 ~~~~VhlVPHSH~D~GWl~T~eeYy~~--------~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~~   71 (78)
                      .+.+||+|||||+|+||+.|+++||.+        .+.++++++++.|+++|+++|+|+|++||.+||+++.++
T Consensus        12 ~~~~v~~v~HsH~D~gWl~t~~e~~~~~~~~i~~~~~~~~~~~vl~~l~~~p~~~F~~~e~~~~~~w~~~~~Pe   85 (298)
T 1o7d_A           12 DMLNVHLVPHTHDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRRFIYVEIAFFSRWWRQQTNA   85 (298)
T ss_dssp             SSEEEEEEEBCBCCSSSSSCHHHHHHTCCTTTCCCCHHHHHHHHHHHHHHCTTCCEEECCHHHHHHHHHTSCHH
T ss_pred             CceEEEEeCCCCCcccccccHHHhhccccchhHHHHHHHHHHHHHHHHHHCCCCeEEEecchHhHHHHHhcCHH
Confidence            356799999999999999999999974        588999999999999999999999999999999887654

>3bvx_A Alpha-mannosidase 2; family 38 glycoysl hydrolase, glycosidase, golgi apparatus, membrane, signal-anchor, transmembrane; HET: WZ5; 1.10A {Drosophila melanogaster} SCOP: a.8.3.1 b.30.5.6 c.6.2.1 PDB: 3bud_A 3buq_A* 3bvt_A* 3bui_A* 3bvv_A* 3bvw_A* 3bvu_A* 3cv5_A* 3czn_A* 3czs_A* 2ow6_A* 1r33_A* 1r34_A* 1tqs_A* 1tqt_A* 1tqu_A* 1tqv_A* 1tqw_A* 2alw_A* 2f18_A* ...

Probab=99.78  E-value=1.4e-19  Score=150.48  Aligned_cols=65  Identities=48%  Similarity=0.990  Sum_probs=61.6

Q ss_pred             cceEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhcccc
Q psy2170           7 LTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKL   71 (78)
Q Consensus         7 ~~~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~~   71 (78)
                      +.+||+|||||+|+||+.|+++||...++++++++++.|++||++||+|+|++||.+||+++.++
T Consensus        80 ~~~V~lV~HsH~D~gWl~t~~e~~~~~~~~~~~~vl~~L~~~p~~~F~~~e~~~l~~w~~e~~Pe  144 (1045)
T 3bvx_A           80 KLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLGEN  144 (1045)
T ss_dssp             CEEEEEEEEEECCSSSSSCHHHHHHHTHHHHHHHHHHHHHHCTTCCEEECCHHHHHHHHHHSCHH
T ss_pred             ceEEEEEecCCCCccccchHHHhhhHHHHHHHHHHHHHHHHCCCcEEEEecHHHHHHHHHHCCHH
Confidence            56899999999999999999999998899999999999999999999999999999999987654

>2wyh_A Alpha-mannosidase; hydrolase, glycosidase, glycoside hydrolase; 1.90A {Streptococcus pyogenes} PDB: 2wyi_A*

Probab=99.67  E-value=4e-17  Score=133.74  Aligned_cols=64  Identities=17%  Similarity=0.334  Sum_probs=57.1

Q ss_pred             cceEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCe-EEhhhHHHHHHHHhhcccc
Q psy2170           7 LTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMT-FIWSEISFFSQWWERSRKL   71 (78)
Q Consensus         7 ~~~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rr-F~~~Ei~ff~~Ww~~q~~~   71 (78)
                      +++||+|||||+|+||+.|+++|+. .+.++++++++.|++||+++ |+|+|..++-+||.++.++
T Consensus        25 ~~~v~~v~HsH~D~~Wl~t~~~~~~-~~~~~~~~vl~~l~~~p~~~~F~~~~q~~~~~~~~~~~p~   89 (923)
T 2wyh_A           25 TKKVHIISHSHWDREWYMAYEQHHM-RLINLIDDLLEVFQTDPDFHSFHLDGQTIILDDYLKVRPE   89 (923)
T ss_dssp             CEEEEEEEBCBCCSSSSSCHHHHHH-HHHHHHHHHHHHHHHCTTCCCEECTTBTHHHHHHHHHCGG
T ss_pred             ceEEEEEccCCCCcccccHHHHHHH-HHHHHHHHHHHHHHhCCCCceEEEeCCHHHHHHHHHHCHH
Confidence            5789999999999999999999975 77799999999999999998 9998876666899877654

>3lvt_A Glycosyl hydrolase, family 38; PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.55A {Enterococcus faecalis}

Probab=99.64  E-value=9.4e-17  Score=131.84  Aligned_cols=65  Identities=17%  Similarity=0.299  Sum_probs=52.6

Q ss_pred             ccceEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhh-HHHHHHHHhhcccc
Q psy2170           6 LLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSE-ISFFSQWWERSRKL   71 (78)
Q Consensus         6 ~~~~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~E-i~ff~~Ww~~q~~~   71 (78)
                      |+++||+|||||+|+||+.|+++|+. .+.++++++++.|+++|+++|++.| ..+|.+||.++.++
T Consensus         5 ~~~~v~~v~HsH~D~~Wl~t~~e~~~-~~~~~~~~~l~~l~~~p~~~f~~~~~q~~~~~~~~~~~p~   70 (899)
T 3lvt_A            5 TKKKVYIVSHSHWDREWYLPYEEHHM-RLIELVDNVLDLIENDPEFNSFHLDGQTIILDDYLQVRPE   70 (899)
T ss_dssp             CCEEEEEEEEECC----CCCHHHHHH-HHHHHHHHHHHHHHHCTTCCCEECTTBTHHHHHHHHHCGG
T ss_pred             ccceEEEECCCCCChHhcCcHHHHHH-HHHHHHHHHHHHHHhCCCceEEEEcccHHHHHHHHhhCHH
Confidence            35689999999999999999999976 7789999999999999999998864 55777899877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	78
d3bvua3	381	c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fru	6e-19
g1o7d.3	330	c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-manno	3e-18
d1k1xa3	310	c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-te	3e-07

>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 381

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: alpha-mannosidase
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 76.2 bits (187), Expect = 6e-19
 Identities = 31/60 (51%), Positives = 44/60 (73%)

Query: 10  VFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSR 69
           VF+VPHSHNDPGW++TFE YY   T+ IL+N +  L  +P M FIW+EIS+F++++    
Sbjct: 53  VFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLG 112

>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 310

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: 4-alpha-glucanotransferase, N-terminal domain
domain: 4-alpha-glucanotransferase, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 43.5 bits (102), Expect = 3e-07
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 10 VFLVPHSHNDPG-WLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERS 68
               H+H   G +   FE  Y+   R  +  + E     P M           +W E +
Sbjct: 6  FIFGIHNHQPLGNFGWVFEEAYNRSYRPFMEILEE----FPEMKVNVHFSGPLLEWIEEN 61

Query: 69 R 69
          +
Sbjct: 62 K 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	78
d3bvua3	381	Golgi alpha-mannosidase II {Fruit fly (Drosophila	99.87
g1o7d.3	330	Lysosomal alpha-mannosidase {Cow (Bos taurus) [Tax	99.8
d1k1xa3	310	4-alpha-glucanotransferase, N-terminal domain {Arc	98.38

>d3bvua3 c.6.2.1 (A:31-411) Golgi alpha-mannosidase II {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: alpha-mannosidase
domain: Golgi alpha-mannosidase II
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.87  E-value=3.9e-23  Score=156.14  Aligned_cols=67  Identities=46%  Similarity=0.953  Sum_probs=63.2

Q ss_pred             cccceEEEeeCccCCchhhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhcccc
Q psy2170           5 ELLTIVFLVPHSHNDPGWLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRKL   71 (78)
Q Consensus         5 ~~~~~VhlVPHSH~D~GWl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~~   71 (78)
                      +.+++||+|||||+|+||+.|+++||...+++||+++++.|+++|++||+|+|++||.+||++++++
T Consensus        48 ~~kl~VhlV~HsH~D~gWl~t~~e~~~~~~~~il~~~l~~l~~~p~~~F~~~~~~~~~~w~~~~~pe  114 (381)
T d3bvua3          48 HHKLKVFVVPHSHNDPGWIQTFEEYYQHDTKHILSNALRHLHDNPEMKFIWAEISYFARFYHDLGEN  114 (381)
T ss_dssp             TBCEEEEEEEEEECCSSSSSCHHHHHHHTHHHHHHHHHHHHHHCTTCCEEECCHHHHHHHHTTSCHH
T ss_pred             CCCcEEEEeCCCCCChhhcCcHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEechHHHHHHHHHcCHH
Confidence            3478999999999999999999999998999999999999999999999999999999999988764

>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: 7-stranded beta/alpha barrel
superfamily: Glycoside hydrolase/deacetylase
family: 4-alpha-glucanotransferase, N-terminal domain
domain: 4-alpha-glucanotransferase, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.38  E-value=1.6e-07  Score=66.08  Aligned_cols=60  Identities=20%  Similarity=0.275  Sum_probs=50.0

Q ss_pred             cceEEEeeCccCCch-hhhhHHHHHHHhHhhHHHHHHHHHhcCCCCeEEhhhHHHHHHHHhhccc
Q psy2170           7 LTIVFLVPHSHNDPG-WLKTFESYYHSQTRMILNNMVEKLVQHPNMTFIWSEISFFSQWWERSRK   70 (78)
Q Consensus         7 ~~~VhlVPHSH~D~G-Wl~T~eeYy~~~v~~Ildsvv~~L~~dp~rrF~~~Ei~ff~~Ww~~q~~   70 (78)
                      +.++++|+|+|.++| |..++++.+...    ...+++.|++.|++||+.....+|-.||++.+.
T Consensus         3 k~~~~~v~H~H~p~g~~~~~~~~~~~~~----y~p~l~~l~~~~~~~~~~~~s~~ll~~~~~~~p   63 (310)
T d1k1xa3           3 RINFIFGIHNHQPLGNFGWVFEEAYNRS----YRPFMEILEEFPEMKVNVHFSGPLLEWIEENKP   63 (310)
T ss_dssp             CEEEEEEEEECCCTTCCHHHHHHHHHHT----HHHHHHHHTTCTTCCEEEEECHHHHHHHHHHCH
T ss_pred             eEEEEEEEeCCCCCCCChHHHHHHHHHH----HHHHHHHHHhCCCCeEEEEccHHHHHHHHHHCH
Confidence            458999999999999 877888777644    345668899999999999999999999987654