Psyllid ID: psy2182

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-------
Protein Sequence
MYSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHcccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccH
Coil and Loop (DISEMBL)
myseegyyetgsikpraiggskprvatngvvtkiadykrecpsiFAWEIRDRLLAegvcnndnipsl
Flexible Loop (DISEMBL)
myseegyyetgsikpraiggskprvatngvvtkiadykrecPSIFAWEIRDRLLaegvcnndnipsl
Low Complexity Region (SEG)
MYSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL
Disordered region (IsUnstruct)
***********************RVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCN*******
Disordered Region (DISOPRED)
*****G*********************NGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIP**
Disordered Region (DISEMBL)
*********TGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL
Disordered Region (DISPRO)
****EGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNND*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	67	2.2.26 [Sep-21-2011]
P63016	422	Paired box protein Pax-6	yes	N/A	0.910	0.144	0.868	3e-25
P63015	422	Paired box protein Pax-6	yes	N/A	0.910	0.144	0.868	3e-25
P26367	422	Paired box protein Pax-6	yes	N/A	0.910	0.144	0.868	3e-25
Q1LZF1	422	Paired box protein Pax-6	yes	N/A	0.910	0.144	0.868	3e-25
P47238	416	Paired box protein Pax-6	N/A	N/A	0.910	0.146	0.868	4e-25
O73917	437	Paired box protein Pax-6	N/A	N/A	0.910	0.139	0.852	5e-25
P55864	422	Paired box protein Pax-6	N/A	N/A	0.910	0.144	0.868	6e-25
P26630	437	Paired box protein Pax-6	no	N/A	0.910	0.139	0.868	7e-25
O18381	857	Paired box protein Pax-6	no	N/A	0.910	0.071	0.836	4e-24
O57682	494	Paired box protein Pax-2-	N/A	N/A	0.910	0.123	0.754	1e-21

>sp|P63016|PAX6_RAT Paired box protein Pax-6 OS=Rattus norvegicus GN=Pax6 PE=2 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct: 60  YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query: 67  L 67
           +
Sbjct: 120 V 120

Transcription factor with important functions in the development of the eye, nose, central nervous system and pancreas. Required for the differentiation of pancreatic islet alpha cells. Competes with PAX4 in binding to a common element in the glucagon, insulin and somatostatin promoters (By similarity). Regulates specification of the ventral neuron subtypes by establishing the correct progenitor domains.
Rattus norvegicus (taxid: 10116)

>sp|P63015|PAX6_MOUSE Paired box protein Pax-6 OS=Mus musculus GN=Pax6 PE=1 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct: 60  YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query: 67  L 67
           +
Sbjct: 120 V 120

Transcription factor with important functions in the development of the eye, nose, central nervous system and pancreas. Required for the differentiation of pancreatic islet alpha cells. Competes with PAX4 in binding to a common element in the glucagon, insulin and somatostatin promoters. Regulates specification of the ventral neuron subtypes by establishing the correct progenitor domains.

Mus musculus (taxid: 10090)

>sp|P26367|PAX6_HUMAN Paired box protein Pax-6 OS=Homo sapiens GN=PAX6 PE=1 SV=2

 Score =  113 bits (283), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct: 60  YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query: 67  L 67
           +
Sbjct: 120 V 120

Transcription factor with important functions in the development of the eye, nose, central nervous system and pancreas. Required for the differentiation of pancreatic islet alpha cells (By similarity). Competes with PAX4 in binding to a common element in the glucagon, insulin and somatostatin promoters. Regulates specification of the ventral neuron subtypes by establishing the correct progenitor domains (By similarity). Isoform 5a appears to function as a molecular switch that specifies target genes.

Homo sapiens (taxid: 9606)

>sp|Q1LZF1|PAX6_BOVIN Paired box protein Pax-6 OS=Bos taurus GN=PAX6 PE=2 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct: 60  YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query: 67  L 67
           +
Sbjct: 120 V 120

Transcription factor with important functions in the development of the eye, nose, central nervous system and pancreas. Required for the differentiation of pancreatic islet alpha cells. Competes with PAX4 in binding to a common element in the glucagon, insulin and somatostatin promoters. Regulates specification of the ventral neuron subtypes by establishing the correct progenitor domains.

Bos taurus (taxid: 9913)

>sp|P47238|PAX6_COTJA Paired box protein Pax-6 OS=Coturnix coturnix japonica GN=PAX6 PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct: 60  YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query: 67  L 67
           +
Sbjct: 120 V 120

May be a transcription factor with important functions in eye and nasal development.

Coturnix coturnix japonica (taxid: 93934)

>sp|O73917|PAX6_ORYLA Paired box protein Pax-6 OS=Oryzias latipes GN=pax6 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/61 (85%), Positives = 56/61 (91%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+PRAIGGSKPRVAT  VV KIA YKRECPSIFAWEIRDRLL+EG+C NDNIPS
Sbjct: 79  YYETGSIRPRAIGGSKPRVATPEVVAKIAQYKRECPSIFAWEIRDRLLSEGICTNDNIPS 138

Query: 67  L 67
           +
Sbjct: 139 V 139

May be a transcription factor with important functions in eye and nasal development.

Oryzias latipes (taxid: 8090)

>sp|P55864|PAX6_XENLA Paired box protein Pax-6 OS=Xenopus laevis GN=pax6 PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/61 (86%), Positives = 56/61 (91%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+PRAIGGSKPRVAT  VV KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct: 60  YYETGSIRPRAIGGSKPRVATPEVVNKIAHYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query: 67  L 67
           +
Sbjct: 120 V 120

May be a transcription factor with important functions in eye and nasal development.

Xenopus laevis (taxid: 8355)

>sp|P26630|PAX6_DANRE Paired box protein Pax-6 OS=Danio rerio GN=pax6a PE=2 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/61 (86%), Positives = 56/61 (91%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+PRAIGGSKPRVAT  VV KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct: 79  YYETGSIRPRAIGGSKPRVATPEVVGKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 138

Query: 67  L 67
           +
Sbjct: 139 V 139

Transcription factor expressed in spatially restricted regions of the neural tube during embryonic development.

Danio rerio (taxid: 7955)

>sp|O18381|PAX6_DROME Paired box protein Pax-6 OS=Drosophila melanogaster GN=ey PE=2 SV=3

 Score =  110 bits (274), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/61 (83%), Positives = 55/61 (90%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+PRAIGGSKPRVAT  VV+KI+ YKRECPSIFAWEIRDRLL E VC NDNIPS
Sbjct: 112 YYETGSIRPRAIGGSKPRVATAEVVSKISQYKRECPSIFAWEIRDRLLQENVCTNDNIPS 171

Query: 67  L 67
           +
Sbjct: 172 V 172

Involved in eye morphogenesis.

Drosophila melanogaster (taxid: 7227)

>sp|O57682|PAX2B_XENLA Paired box protein Pax-2-B OS=Xenopus laevis GN=pax2-b PE=2 SV=2

 Score =  101 bits (252), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/61 (75%), Positives = 54/61 (88%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKP  IGGSKP+VAT  VV KIADYKR+ P++FAWEIRDRLLAEG+C+ND +PS
Sbjct: 71  YYETGSIKPGVIGGSKPKVATPKVVDKIADYKRQNPTMFAWEIRDRLLAEGICDNDTVPS 130

Query: 67  L 67
           +
Sbjct: 131 V 131

Probable transcription factor. Involved in kidney development, acting synergistically with lhx1/lim-1 in pronephric morphogenesis during the tailbud stages.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
328716918	571	PREDICTED: paired box protein Pax-6-like	0.910	0.106	0.934	7e-27
328716920	622	PREDICTED: paired box protein Pax-6-like	0.910	0.098	0.934	7e-27
332022174	631	Paired box protein Pax-6 [Acromyrmex ech	0.910	0.096	0.918	5e-26
340715062	514	PREDICTED: paired box protein Pax-6-like	0.910	0.118	0.918	8e-26
321464778	473	twin of eyeless [Daphnia pulex]	0.910	0.128	0.918	8e-26
383859947	628	PREDICTED: paired box protein Pax-6-like	0.910	0.097	0.918	1e-25
307189169	516	Paired box protein Pax-6 [Camponotus flo	0.910	0.118	0.918	1e-25
307211180	506	Paired box protein Pax-6 [Harpegnathos s	0.910	0.120	0.918	1e-25
345496344	522	PREDICTED: paired box protein Pax-6 [Nas	0.910	0.116	0.918	2e-25
78370178	288	Pax-6 [Daphnia pulex]	0.910	0.211	0.901	3e-25

>gi|328716918|ref|XP_003246075.1| PREDICTED: paired box protein Pax-6-like isoform 2 [Acyrthosiphon pisum]

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 57/61 (93%), Positives = 60/61 (98%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKPRAIGGSKPRVATNGVV KIADYKRECPSIFAWEIRDRLL+EGVC+NDNIPS
Sbjct: 89  YYETGSIKPRAIGGSKPRVATNGVVNKIADYKRECPSIFAWEIRDRLLSEGVCSNDNIPS 148

Query: 67  L 67
           +
Sbjct: 149 V 149

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716920|ref|XP_001944246.2| PREDICTED: paired box protein Pax-6-like isoform 1 [Acyrthosiphon pisum]

 Score =  124 bits (311), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 57/61 (93%), Positives = 60/61 (98%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKPRAIGGSKPRVATNGVV KIADYKRECPSIFAWEIRDRLL+EGVC+NDNIPS
Sbjct: 140 YYETGSIKPRAIGGSKPRVATNGVVNKIADYKRECPSIFAWEIRDRLLSEGVCSNDNIPS 199

Query: 67  L 67
           +
Sbjct: 200 V 200

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022174|gb|EGI62491.1| Paired box protein Pax-6 [Acromyrmex echinatior]

 Score =  121 bits (304), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 56/61 (91%), Positives = 57/61 (93%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKPRAIGGSKPRVAT  VV KIADYKRECPSIFAWEIRDRLL EGVCNNDNIPS
Sbjct: 205 YYETGSIKPRAIGGSKPRVATTPVVNKIADYKRECPSIFAWEIRDRLLQEGVCNNDNIPS 264

Query: 67  L 67
           +
Sbjct: 265 V 265

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715062|ref|XP_003396039.1| PREDICTED: paired box protein Pax-6-like [Bombus terrestris] gi|350414727|ref|XP_003490400.1| PREDICTED: paired box protein Pax-6-like [Bombus impatiens]

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/61 (91%), Positives = 57/61 (93%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKPRAIGGSKPRVAT  VV KIADYKRECPSIFAWEIRDRLL EGVCNNDNIPS
Sbjct: 90  YYETGSIKPRAIGGSKPRVATTPVVNKIADYKRECPSIFAWEIRDRLLQEGVCNNDNIPS 149

Query: 67  L 67
           +
Sbjct: 150 V 150

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321464778|gb|EFX75784.1| twin of eyeless [Daphnia pulex]

 Score =  120 bits (302), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 56/61 (91%), Positives = 59/61 (96%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKPRAIGGSKPRVAT+ VVTKIADYKRECPSIFAWEIRDRLL+EGVCNND IPS
Sbjct: 76  YYETGSIKPRAIGGSKPRVATSCVVTKIADYKRECPSIFAWEIRDRLLSEGVCNNDTIPS 135

Query: 67  L 67
           +
Sbjct: 136 V 136

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859947|ref|XP_003705453.1| PREDICTED: paired box protein Pax-6-like [Megachile rotundata]

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/61 (91%), Positives = 57/61 (93%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKPRAIGGSKPRVAT  VV KIADYKRECPSIFAWEIRDRLL EGVCNNDNIPS
Sbjct: 204 YYETGSIKPRAIGGSKPRVATTPVVNKIADYKRECPSIFAWEIRDRLLQEGVCNNDNIPS 263

Query: 67  L 67
           +
Sbjct: 264 V 264

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189169|gb|EFN73617.1| Paired box protein Pax-6 [Camponotus floridanus]

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/61 (91%), Positives = 57/61 (93%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKPRAIGGSKPRVAT  VV KIADYKRECPSIFAWEIRDRLL EGVCNNDNIPS
Sbjct: 90  YYETGSIKPRAIGGSKPRVATTPVVNKIADYKRECPSIFAWEIRDRLLQEGVCNNDNIPS 149

Query: 67  L 67
           +
Sbjct: 150 V 150

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211180|gb|EFN87393.1| Paired box protein Pax-6 [Harpegnathos saltator]

 Score =  120 bits (301), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 56/61 (91%), Positives = 57/61 (93%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKPRAIGGSKPRVAT  VV KIADYKRECPSIFAWEIRDRLL EGVCNNDNIPS
Sbjct: 116 YYETGSIKPRAIGGSKPRVATTPVVNKIADYKRECPSIFAWEIRDRLLQEGVCNNDNIPS 175

Query: 67  L 67
           +
Sbjct: 176 V 176

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496344|ref|XP_001602823.2| PREDICTED: paired box protein Pax-6 [Nasonia vitripennis]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/61 (91%), Positives = 57/61 (93%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKPRAIGGSKPRVAT  VV KIADYKRECPSIFAWEIRDRLL EGVCNNDNIPS
Sbjct: 88  YYETGSIKPRAIGGSKPRVATTPVVNKIADYKRECPSIFAWEIRDRLLQEGVCNNDNIPS 147

Query: 67  L 67
           +
Sbjct: 148 V 148

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|78370178|gb|ABB43130.1| Pax-6 [Daphnia pulex]

 Score =  119 bits (297), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 55/61 (90%), Positives = 59/61 (96%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           Y+ETGSIKPRAIGGSKPRVAT+ VVTKIADYKRECPSIFAWEIRDRLL+EGVCNND IPS
Sbjct: 69  YHETGSIKPRAIGGSKPRVATSCVVTKIADYKRECPSIFAWEIRDRLLSEGVCNNDTIPS 128

Query: 67  L 67
           +
Sbjct: 129 V 129

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	67
UNIPROTKB|F1NXF7	186	PAX6 "Paired box protein Pax-6	0.910	0.327	0.868	7.6e-25
UNIPROTKB|G3V3Q9	377	PAX6 "Paired box protein Pax-6	0.910	0.161	0.868	7.6e-25
UNIPROTKB|F1M5I1	305	Pax6 "Paired box protein Pax-6	0.910	0.2	0.868	7.6e-25
UNIPROTKB|F1M6K5	210	Pax6 "Paired box protein Pax-6	0.910	0.290	0.868	7.6e-25
UNIPROTKB|F1NF66	422	PAX6 "Paired box protein Pax-6	0.910	0.144	0.868	8.6e-25
UNIPROTKB|Q1LZF1	422	PAX6 "Paired box protein Pax-6	0.910	0.144	0.868	8.6e-25
UNIPROTKB|P26367	422	PAX6 "Paired box protein Pax-6	0.910	0.144	0.868	8.6e-25
UNIPROTKB|F2Z5M7	422	PAX6 "Uncharacterized protein"	0.910	0.144	0.868	8.6e-25
MGI|MGI:97490	422	Pax6 "paired box gene 6" [Mus	0.910	0.144	0.868	8.6e-25
RGD|3258	422	Pax6 "paired box 6" [Rattus no	0.910	0.144	0.868	8.6e-25

UNIPROTKB|F1NXF7 PAX6 "Paired box protein Pax-6" [Gallus gallus (taxid:9031)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query:     7 YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
             YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct:    56 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 115

Query:    67 L 67
             +
Sbjct:   116 V 116

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G3V3Q9 PAX6 "Paired box protein Pax-6" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query:     7 YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
             YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct:    15 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 74

Query:    67 L 67
             +
Sbjct:    75 V 75

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1M5I1 Pax6 "Paired box protein Pax-6" [Rattus norvegicus (taxid:10116)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query:     7 YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
             YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct:   125 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 184

Query:    67 L 67
             +
Sbjct:   185 V 185

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1M6K5 Pax6 "Paired box protein Pax-6" [Rattus norvegicus (taxid:10116)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query:     7 YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
             YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct:    33 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 92

Query:    67 L 67
             +
Sbjct:    93 V 93

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1NF66 PAX6 "Paired box protein Pax-6" [Gallus gallus (taxid:9031)]

 Score = 283 (104.7 bits), Expect = 8.6e-25, P = 8.6e-25
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query:     7 YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
             YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct:    60 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query:    67 L 67
             +
Sbjct:   120 V 120

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q1LZF1 PAX6 "Paired box protein Pax-6" [Bos taurus (taxid:9913)]

 Score = 283 (104.7 bits), Expect = 8.6e-25, P = 8.6e-25
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query:     7 YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
             YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct:    60 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query:    67 L 67
             +
Sbjct:   120 V 120

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0050768 "negative regulation of neurogenesis" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0071837 "HMG box domain binding" evidence=IEA

GO:0070412 "R-SMAD binding" evidence=IEA

GO:0070410 "co-SMAD binding" evidence=IEA

GO:0061303 "cornea development in camera-type eye" evidence=IEA

GO:0061072 "iris morphogenesis" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0048708 "astrocyte differentiation" evidence=IEA

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IEA

GO:0048505 "regulation of timing of cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0042462 "eye photoreceptor cell development" evidence=IEA

GO:0035035 "histone acetyltransferase binding" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0032808 "lacrimal gland development" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0030858 "positive regulation of epithelial cell differentiation" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0021983 "pituitary gland development" evidence=IEA

GO:0021918 "regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment" evidence=IEA

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IEA

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IEA

GO:0021905 "forebrain-midbrain boundary formation" evidence=IEA

GO:0021902 "commitment of neuronal cell to specific neuron type in forebrain" evidence=IEA

GO:0021798 "forebrain dorsal/ventral pattern formation" evidence=IEA

GO:0021797 "forebrain anterior/posterior pattern specification" evidence=IEA

GO:0021796 "cerebral cortex regionalization" evidence=IEA

GO:0021778 "oligodendrocyte cell fate specification" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0009950 "dorsal/ventral axis specification" evidence=IEA

GO:0009611 "response to wounding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007435 "salivary gland morphogenesis" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003322 "pancreatic A cell development" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001709 "cell fate determination" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

UNIPROTKB|P26367 PAX6 "Paired box protein Pax-6" [Homo sapiens (taxid:9606)]

 Score = 283 (104.7 bits), Expect = 8.6e-25, P = 8.6e-25
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query:     7 YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
             YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct:    60 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query:    67 L 67
             +
Sbjct:   120 V 120

GO:0001709 "cell fate determination" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0003680 "AT DNA binding" evidence=IEA

GO:0003690 "double-stranded DNA binding" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007435 "salivary gland morphogenesis" evidence=IEA

GO:0009950 "dorsal/ventral axis specification" evidence=IEA

GO:0021778 "oligodendrocyte cell fate specification" evidence=IEA

GO:0021796 "cerebral cortex regionalization" evidence=IEA

GO:0021797 "forebrain anterior/posterior pattern specification" evidence=IEA

GO:0021798 "forebrain dorsal/ventral pattern formation" evidence=IEA

GO:0021902 "commitment of neuronal cell to specific neuron type in forebrain" evidence=IEA

GO:0021905 "forebrain-midbrain boundary formation" evidence=IEA

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IEA

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IEA

GO:0021918 "regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment" evidence=IEA

GO:0021983 "pituitary gland development" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0030858 "positive regulation of epithelial cell differentiation" evidence=IEA

GO:0030902 "hindbrain development" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0032808 "lacrimal gland development" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0042462 "eye photoreceptor cell development" evidence=IEA

GO:0042660 "positive regulation of cell fate specification" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0048505 "regulation of timing of cell differentiation" evidence=IEA

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IEA

GO:0048708 "astrocyte differentiation" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0070410 "co-SMAD binding" evidence=IEA

GO:0071837 "HMG box domain binding" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0061072 "iris morphogenesis" evidence=IMP

GO:0061303 "cornea development in camera-type eye" evidence=IMP

GO:0001568 "blood vessel development" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0050768 "negative regulation of neurogenesis" evidence=ISS

GO:0048663 "neuron fate commitment" evidence=NAS

GO:0009611 "response to wounding" evidence=IEP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=TAS

GO:0007601 "visual perception" evidence=TAS

GO:0003677 "DNA binding" evidence=TAS

GO:0009887 "organ morphogenesis" evidence=TAS

GO:0007417 "central nervous system development" evidence=TAS

GO:0001654 "eye development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0070412 "R-SMAD binding" evidence=IPI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0000790 "nuclear chromatin" evidence=IDA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IDA

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=IDA

GO:0003322 "pancreatic A cell development" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=IMP

GO:0006366 "transcription from RNA polymerase II promoter" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0019901 "protein kinase binding" evidence=ISS

GO:0035035 "histone acetyltransferase binding" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F2Z5M7 PAX6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 283 (104.7 bits), Expect = 8.6e-25, P = 8.6e-25
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query:     7 YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
             YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct:    60 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query:    67 L 67
             +
Sbjct:   120 V 120

GO:0071837 "HMG box domain binding" evidence=IEA

GO:0070412 "R-SMAD binding" evidence=IEA

GO:0070410 "co-SMAD binding" evidence=IEA

GO:0061303 "cornea development in camera-type eye" evidence=IEA

GO:0061072 "iris morphogenesis" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0048708 "astrocyte differentiation" evidence=IEA

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IEA

GO:0048505 "regulation of timing of cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0042462 "eye photoreceptor cell development" evidence=IEA

GO:0035035 "histone acetyltransferase binding" evidence=IEA

GO:0033365 "protein localization to organelle" evidence=IEA

GO:0032808 "lacrimal gland development" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0030858 "positive regulation of epithelial cell differentiation" evidence=IEA

GO:0030334 "regulation of cell migration" evidence=IEA

GO:0030216 "keratinocyte differentiation" evidence=IEA

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA

GO:0021983 "pituitary gland development" evidence=IEA

GO:0021918 "regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment" evidence=IEA

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IEA

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IEA

GO:0021905 "forebrain-midbrain boundary formation" evidence=IEA

GO:0021902 "commitment of neuronal cell to specific neuron type in forebrain" evidence=IEA

GO:0021798 "forebrain dorsal/ventral pattern formation" evidence=IEA

GO:0021797 "forebrain anterior/posterior pattern specification" evidence=IEA

GO:0021796 "cerebral cortex regionalization" evidence=IEA

GO:0021778 "oligodendrocyte cell fate specification" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0009950 "dorsal/ventral axis specification" evidence=IEA

GO:0009611 "response to wounding" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007435 "salivary gland morphogenesis" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003322 "pancreatic A cell development" evidence=IEA

GO:0002088 "lens development in camera-type eye" evidence=IEA

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

GO:0001709 "cell fate determination" evidence=IEA

GO:0001568 "blood vessel development" evidence=IEA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=IEA

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=IEA

GO:0000790 "nuclear chromatin" evidence=IEA

MGI|MGI:97490 Pax6 "paired box gene 6" [Mus musculus (taxid:10090)]

 Score = 283 (104.7 bits), Expect = 8.6e-25, P = 8.6e-25
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query:     7 YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
             YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct:    60 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query:    67 L 67
             +
Sbjct:   120 V 120

GO:0000790 "nuclear chromatin" evidence=ISO;IDA

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=ISO;IDA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISO;IDA

GO:0001568 "blood vessel development" evidence=ISO

GO:0001709 "cell fate determination" evidence=IMP

GO:0001764 "neuron migration" evidence=ISO;IMP

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IMP

GO:0002088 "lens development in camera-type eye" evidence=IMP

GO:0003322 "pancreatic A cell development" evidence=ISO;IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0003680 "AT DNA binding" evidence=ISO

GO:0003690 "double-stranded DNA binding" evidence=ISO

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005667 "transcription factor complex" evidence=TAS

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0007224 "smoothened signaling pathway" evidence=IDA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0007411 "axon guidance" evidence=IMP

GO:0007420 "brain development" evidence=ISO;IMP

GO:0007435 "salivary gland morphogenesis" evidence=IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0009950 "dorsal/ventral axis specification" evidence=IMP

GO:0009952 "anterior/posterior pattern specification" evidence=IGI;IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0010628 "positive regulation of gene expression" evidence=ISO;IMP

GO:0019901 "protein kinase binding" evidence=IPI

GO:0021543 "pallium development" evidence=IMP

GO:0021778 "oligodendrocyte cell fate specification" evidence=IMP

GO:0021796 "cerebral cortex regionalization" evidence=IMP

GO:0021797 "forebrain anterior/posterior pattern specification" evidence=IMP

GO:0021798 "forebrain dorsal/ventral pattern formation" evidence=IMP

GO:0021902 "commitment of neuronal cell to specific neuron type in forebrain" evidence=IMP

GO:0021905 "forebrain-midbrain boundary formation" evidence=IMP

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IMP

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IMP

GO:0021918 "regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment" evidence=IMP

GO:0021983 "pituitary gland development" evidence=IMP

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IDA

GO:0030154 "cell differentiation" evidence=IMP

GO:0030216 "keratinocyte differentiation" evidence=IMP

GO:0030334 "regulation of cell migration" evidence=IMP

GO:0030858 "positive regulation of epithelial cell differentiation" evidence=IMP

GO:0030900 "forebrain development" evidence=IMP

GO:0030902 "hindbrain development" evidence=ISO

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0032808 "lacrimal gland development" evidence=IMP

GO:0033365 "protein localization to organelle" evidence=IMP

GO:0035035 "histone acetyltransferase binding" evidence=IDA

GO:0042462 "eye photoreceptor cell development" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=ISO

GO:0042660 "positive regulation of cell fate specification" evidence=ISO

GO:0043010 "camera-type eye development" evidence=IGI;IMP

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0044424 "intracellular part" evidence=IDA

GO:0045165 "cell fate commitment" evidence=IGI;IMP

GO:0045664 "regulation of neuron differentiation" evidence=ISO

GO:0045665 "negative regulation of neuron differentiation" evidence=IGI

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0048505 "regulation of timing of cell differentiation" evidence=IMP

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IGI

GO:0048708 "astrocyte differentiation" evidence=IMP

GO:0050678 "regulation of epithelial cell proliferation" evidence=ISO

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IMP

GO:0050767 "regulation of neurogenesis" evidence=ISO;IMP

GO:0061072 "iris morphogenesis" evidence=ISO

GO:0061303 "cornea development in camera-type eye" evidence=ISO

GO:0070410 "co-SMAD binding" evidence=IDA

GO:0070412 "R-SMAD binding" evidence=ISO;IDA

GO:0071837 "HMG box domain binding" evidence=IPI

RGD|3258 Pax6 "paired box 6" [Rattus norvegicus (taxid:10116)]

 Score = 283 (104.7 bits), Expect = 8.6e-25, P = 8.6e-25
 Identities = 53/61 (86%), Positives = 57/61 (93%)

Query:     7 YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
             YYETGSI+PRAIGGSKPRVAT  VV+KIA YKRECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct:    60 YYETGSIRPRAIGGSKPRVATPEVVSKIAQYKRECPSIFAWEIRDRLLSEGVCTNDNIPS 119

Query:    67 L 67
             +
Sbjct:   120 V 120

GO:0000790 "nuclear chromatin" evidence=ISO;IDA

GO:0000979 "RNA polymerase II core promoter sequence-specific DNA binding" evidence=ISO;IC

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISO;IC

GO:0001568 "blood vessel development" evidence=IEA;ISO

GO:0001709 "cell fate determination" evidence=IEA;ISO

GO:0001764 "neuron migration" evidence=ISO;IMP

GO:0002052 "positive regulation of neuroblast proliferation" evidence=IEA;ISO

GO:0002088 "lens development in camera-type eye" evidence=IEA;ISO

GO:0003322 "pancreatic A cell development" evidence=ISO;IMP

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003680 "AT DNA binding" evidence=IDA

GO:0003690 "double-stranded DNA binding" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISO;TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=IEA;ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0007224 "smoothened signaling pathway" evidence=IEA;ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007409 "axonogenesis" evidence=ISO

GO:0007411 "axon guidance" evidence=IEA;ISO

GO:0007417 "central nervous system development" evidence=IEP

GO:0007420 "brain development" evidence=ISO;IMP

GO:0007435 "salivary gland morphogenesis" evidence=IEA;ISO

GO:0008134 "transcription factor binding" evidence=IEA;ISO

GO:0008285 "negative regulation of cell proliferation" evidence=ISO

GO:0009611 "response to wounding" evidence=IEA;ISO

GO:0009950 "dorsal/ventral axis specification" evidence=IEA;ISO

GO:0009952 "anterior/posterior pattern specification" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0010468 "regulation of gene expression" evidence=ISO

GO:0010628 "positive regulation of gene expression" evidence=ISO;IMP

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0021543 "pallium development" evidence=ISO

GO:0021778 "oligodendrocyte cell fate specification" evidence=IEA;ISO

GO:0021796 "cerebral cortex regionalization" evidence=IEA;ISO

GO:0021797 "forebrain anterior/posterior pattern specification" evidence=IEA;ISO

GO:0021798 "forebrain dorsal/ventral pattern formation" evidence=IEA;ISO

GO:0021902 "commitment of neuronal cell to specific neuron type in forebrain" evidence=IEA;ISO

GO:0021905 "forebrain-midbrain boundary formation" evidence=IEA;ISO

GO:0021912 "regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification" evidence=IEA;ISO

GO:0021913 "regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification" evidence=IEA;ISO

GO:0021918 "regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment" evidence=IEA;ISO

GO:0021983 "pituitary gland development" evidence=IEA;ISO

GO:0023019 "signal transduction involved in regulation of gene expression" evidence=IEA;ISO

GO:0030154 "cell differentiation" evidence=ISO

GO:0030216 "keratinocyte differentiation" evidence=IEA;ISO

GO:0030334 "regulation of cell migration" evidence=IEA;ISO

GO:0030858 "positive regulation of epithelial cell differentiation" evidence=IEA;ISO

GO:0030900 "forebrain development" evidence=ISO

GO:0030902 "hindbrain development" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA;ISO

GO:0032808 "lacrimal gland development" evidence=IEA;ISO

GO:0033365 "protein localization to organelle" evidence=IEA;ISO

GO:0035035 "histone acetyltransferase binding" evidence=IEA;ISO

GO:0042462 "eye photoreceptor cell development" evidence=IEA;ISO

GO:0042593 "glucose homeostasis" evidence=IEA;ISO

GO:0042660 "positive regulation of cell fate specification" evidence=IMP

GO:0043010 "camera-type eye development" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=RCA;IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0044424 "intracellular part" evidence=ISO

GO:0045165 "cell fate commitment" evidence=ISO

GO:0045664 "regulation of neuron differentiation" evidence=IDA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA;ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;IC

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA;ISO

GO:0048505 "regulation of timing of cell differentiation" evidence=IEA;ISO

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IEA;ISO

GO:0048708 "astrocyte differentiation" evidence=IEA;ISO

GO:0050678 "regulation of epithelial cell proliferation" evidence=IMP

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA;ISO

GO:0050767 "regulation of neurogenesis" evidence=ISO;IMP

GO:0050768 "negative regulation of neurogenesis" evidence=ISS

GO:0061072 "iris morphogenesis" evidence=IEA;ISO

GO:0061303 "cornea development in camera-type eye" evidence=IEA;ISO

GO:0070410 "co-SMAD binding" evidence=IEA;ISO

GO:0070412 "R-SMAD binding" evidence=IEA;ISO

GO:0071837 "HMG box domain binding" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P47240	PAX8_CANFA	No assigned EC number	0.7377	0.9104	0.1328	yes	N/A
Q5R9M8	PAX8_PONAB	No assigned EC number	0.7377	0.9104	0.1334	yes	N/A
P63016	PAX6_RAT	No assigned EC number	0.8688	0.9104	0.1445	yes	N/A
P63015	PAX6_MOUSE	No assigned EC number	0.8688	0.9104	0.1445	yes	N/A
Q1LZF1	PAX6_BOVIN	No assigned EC number	0.8688	0.9104	0.1445	yes	N/A
P26367	PAX6_HUMAN	No assigned EC number	0.8688	0.9104	0.1445	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	67
cd00131	128	cd00131, PAX, Paired Box domain	2e-34
pfam00292	125	pfam00292, PAX, 'Paired box' domain	3e-34
smart00351	125	smart00351, PAX, Paired Box domain	1e-33

>gnl|CDD|238076 cd00131, PAX, Paired Box domain

 Score =  112 bits (282), Expect = 2e-34
 Identities = 44/61 (72%), Positives = 50/61 (81%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+P AIGGSKPRVAT  VV KI  YK+E P +FAWEIRDRLL EGVC+  N+PS
Sbjct: 57  YYETGSIRPGAIGGSKPRVATPEVVKKIEIYKQENPGMFAWEIRDRLLQEGVCDKSNVPS 116

Query: 67  L 67
           +
Sbjct: 117 V 117

Length = 128

>gnl|CDD|109353 pfam00292, PAX, 'Paired box' domain

 Score =  112 bits (281), Expect = 3e-34
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           Y ETGSI+P  IGGSKP+VAT  VV KIA+YKRE P IFAWEIRDRLLAEGVC+NDN+PS
Sbjct: 57  YQETGSIRPGVIGGSKPKVATPEVVKKIAEYKRENPGIFAWEIRDRLLAEGVCDNDNVPS 116

Query: 67  L 67
           +
Sbjct: 117 V 117

Length = 125

>gnl|CDD|128645 smart00351, PAX, Paired Box domain

 Score =  110 bits (278), Expect = 1e-33
 Identities = 47/60 (78%), Positives = 53/60 (88%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+P AIGGSKP+VAT  VV KIADYK+E P IFAWEIRDRLL+EGVC+ DN+PS
Sbjct: 57  YYETGSIRPGAIGGSKPKVATPKVVKKIADYKQENPGIFAWEIRDRLLSEGVCDKDNVPS 116

Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	67
PF00292	125	PAX: 'Paired box' domain; InterPro: IPR001523 The	100.0
KOG3517|consensus	334		99.97
KOG3862|consensus	327		99.94
KOG0849|consensus	354		99.85
cd00131	128	PAX Paired Box domain	99.7
smart00351	125	PAX Paired Box domain.	99.68
PF13565	77	HTH_32: Homeodomain-like domain	97.84
PF13551	112	HTH_29: Winged helix-turn helix	97.21
COG3415	138	Transposase and inactivated derivatives [DNA repli	96.88
PF01710	119	HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Tr	95.63
PF13072	38	DUF3936: Protein of unknown function (DUF3936)	89.66
cd04059	297	Peptidases_S8_Protein_convertases_Kexins_Furin-lik	80.52

>PF00292 PAX: 'Paired box' domain; InterPro: IPR001523 The paired box is a conserved 124 amino acid N-terminal domain of unknown function that usually, but not always, precedes a homeobox domain (see IPR001356 from INTERPRO) [, ]

Probab=100.00  E-value=4.8e-35  Score=192.44  Aligned_cols=66  Identities=65%  Similarity=1.080  Sum_probs=50.4

Q ss_pred             cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCCCCCCCC
Q psy2182           2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL   67 (67)
Q Consensus         2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~~~~psv   67 (67)
                      |||+||+|||||+||+|||||||++||+++.+|++|+++||+||+|||||+|+++|||+++|+|||
T Consensus        52 KIl~Ry~eTGsi~Pg~iGGskprv~tp~v~~~I~~~k~enP~ifawEiR~~L~~~gvc~~~~~Psv  117 (125)
T PF00292_consen   52 KILSRYRETGSIRPGPIGGSKPRVATPEVVEKIEQYKRENPTIFAWEIRDRLIADGVCDRSNVPSV  117 (125)
T ss_dssp             HHHHHHHHHS-SS----S----SSS-HCHHHHHHHHHHH-TTS-HHHHHHHHHHTTSS-TTTS--H
T ss_pred             HHHHHHHHhcccCcccccCCCCCCCChHHHHHHHHHHhcCCCcchHHHHHHHHHcCCCCCCCCCCH
Confidence            899999999999999999999999999999999999999999999999999999999999999996

Paired box genes are expressed in alternate segments of the developing fruit fly, the observed grouping of segments into pairs depending on the position of the segment in the segmental array, and not on the identity of the segment as in the case of homeotic genes. This implies that the genes affect different processes from those altered by homeotic genes.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 6PAX_A 1K78_E 1MDM_A 2K27_A 1PDN_C.

>KOG3517|consensus

Probab=99.97  E-value=3.6e-33  Score=203.27  Aligned_cols=66  Identities=58%  Similarity=0.926  Sum_probs=65.5

Q ss_pred             cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCCCCCCCC
Q psy2182           2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL   67 (67)
Q Consensus         2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~~~~psv   67 (67)
                      |||.||.|||||-||+||||||+|+||.|++.|.+||+..|+||||||||||+.+||||+.|||||
T Consensus        55 KILaRy~EtGsIlPGaIGGSkPRVTTP~VV~~IR~~Kq~DPGIFAWEIRDRLlsdgiCDk~NvPSV  120 (334)
T KOG3517|consen   55 KILARYNETGSILPGAIGGSKPRVTTPKVVKYIRSLKQRDPGIFAWEIRDRLLSDGICDKYNVPSV  120 (334)
T ss_pred             HHHHHhccCCcccccccCCCCCccCChhHHHHHHHhhccCCceeeehhhhhhhhcccccccCCcch
Confidence            899999999999999999999999999999999999999999999999999999999999999997

>KOG3862|consensus

Probab=99.94  E-value=1.9e-27  Score=173.95  Aligned_cols=66  Identities=65%  Similarity=1.072  Sum_probs=65.3

Q ss_pred             cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCCCCCCCC
Q psy2182           2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL   67 (67)
Q Consensus         2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~~~~psv   67 (67)
                      |||.||+|||||+||.|||||||++||.|+++|..||++||.||+||||++|+.++||+.++||||
T Consensus        60 kil~r~yEtgS~~pg~iggsk~KvAtp~Vvk~i~~~k~~n~~mfaweiR~~l~~~~ic~~d~vpsV  125 (327)
T KOG3862|consen   60 KILGRYYETGSIRPGVIGGSKPKVATPKVVKKIALYKRQNPTMFAWEIRDRLLAEPICDNDTVPSV  125 (327)
T ss_pred             hHHHHHHHhcCcccCCCCCCccccccchHHHHHHHHhhcCcchhhhhhhhhhhcccccCCCCCchH
Confidence            899999999999999999999999999999999999999999999999999999999999999997

>KOG0849|consensus

Probab=99.85  E-value=4.6e-22  Score=147.00  Aligned_cols=66  Identities=59%  Similarity=1.026  Sum_probs=64.5

Q ss_pred             cccchhhhcccccccccCCCCCC-cCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCCCCCCCC
Q psy2182           2 YSEEGYYETGSIKPRAIGGSKPR-VATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL   67 (67)
Q Consensus         2 ~~L~Ry~eTGsi~Pg~iGGskpk-~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~~~~psv   67 (67)
                      ||||||++||+|+||.|||++|+ +++++++.+|++|++++|++|+||||++|+.+++|+..++|||
T Consensus        50 ~il~r~~~~~~i~p~~i~~~~~~~~~t~~~~~~i~~~k~~~P~~~~~~ir~~l~~~~~~~~~t~Ps~  116 (354)
T KOG0849|consen   50 KILNRYYRTGSIRPGGIGGSKPRIVATPEVEAKIEQYKRENPAMFAWEIRDQLLHEGLCTQATLPSV  116 (354)
T ss_pred             hhhcccccccccccccccccccCCCCCchhHHHHHHHHhcCCcccchhhhhcccCcccccCCCCCCh
Confidence            79999999999999999999998 9999999999999999999999999999999999999999985

>cd00131 PAX Paired Box domain

Probab=99.70  E-value=3.2e-17  Score=106.57  Aligned_cols=66  Identities=67%  Similarity=1.091  Sum_probs=62.7

Q ss_pred             cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCCCCCCCC
Q psy2182           2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL   67 (67)
Q Consensus         2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~~~~psv   67 (67)
                      +++.||.|||++.|++.||.+|+..+++++..|..+.++||++|+|||+++|.++|+|.+++.||+
T Consensus        52 r~i~r~~e~G~v~pk~~gg~rpr~~~~~~~~~i~~~v~~~p~~Tl~El~~~L~~~gv~~~~~~~s~  117 (128)
T cd00131          52 KILNRYYETGSIRPGAIGGSKPRVATPEVVKKIEIYKQENPGMFAWEIRDRLLQEGVCDKSNVPSV  117 (128)
T ss_pred             HHHHHHHHcCCcCCCCCCCCCCCcCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHcCCcccCCCCCH
Confidence            578999999999999999999999999999999999999999999999999999999999999985

>smart00351 PAX Paired Box domain

Probab=99.68  E-value=1.1e-16  Score=103.33  Aligned_cols=66  Identities=71%  Similarity=1.161  Sum_probs=63.6

Q ss_pred             cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCCCCCCCC
Q psy2182           2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL   67 (67)
Q Consensus         2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~~~~psv   67 (67)
                      |++.||.+||++.|++.||.+|+..+++++..|.++.+++|++++|||++.|.++|||...++||+
T Consensus        52 kwi~r~~~~G~~~pk~~gg~rp~~~~~~~~~~I~~~~~~~p~~t~~el~~~L~~~gv~~~~~~Ps~  117 (125)
T smart00351       52 KILGRYYETGSIRPGAIGGSKPKVATPKVVKKIADYKQENPGIFAWEIRDRLLSEGVCDKDNVPSV  117 (125)
T ss_pred             HHHHHHHHcCCcCCcCCCCCCCCccCHHHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCcCCCCCCh
Confidence            578999999999999999999999999999999999999999999999999999999999999985

>PF13565 HTH_32: Homeodomain-like domain

Probab=97.84  E-value=4.9e-05  Score=43.95  Aligned_cols=53  Identities=25%  Similarity=0.210  Sum_probs=44.5

Q ss_pred             cccchhhhcc-----cccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhc
Q psy2182           2 YSEEGYYETG-----SIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAE   56 (67)
Q Consensus         2 ~~L~Ry~eTG-----si~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~   56 (67)
                      +.+.||+++|     +..+++-+|-.++  ++++++.|.++..++|.....+|.+.|.++
T Consensus         4 rw~~ry~~~G~~gL~~~~~~~~~Grp~~--~~e~~~~i~~~~~~~p~wt~~~i~~~L~~~   61 (77)
T PF13565_consen    4 RWLKRYREEGLEGLKDRKRRPRPGRPRK--DPEQRERIIALIEEHPRWTPREIAEYLEEE   61 (77)
T ss_pred             HHHHHHHhhCchhhhcccccCCCCCCCC--cHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            4678999999     7655565555444  889999999999999999999999999987

>PF13551 HTH_29: Winged helix-turn helix

Probab=97.21  E-value=0.00045  Score=41.50  Aligned_cols=56  Identities=21%  Similarity=0.308  Sum_probs=44.2

Q ss_pred             cccchhhhcc--cccc-cccCCCCCCcCCHHHHHHHHHHHhhCC-----CccHHHHHHHHHhcC
Q psy2182           2 YSEEGYYETG--SIKP-RAIGGSKPRVATNGVVTKIADYKRECP-----SIFAWEIRDRLLAEG   57 (67)
Q Consensus         2 ~~L~Ry~eTG--si~P-g~iGGskpk~~t~~v~~~I~~~k~~~p-----~ifawEiR~~L~~~G   57 (67)
                      +.+.+|.++|  .+.+ +.-||..++..++++.+.|.++..++|     ..+.-+|++.|+++.
T Consensus        31 r~~~~~~~~G~~~l~~~~~~~g~~~~~l~~~~~~~l~~~~~~~p~~g~~~~t~~~l~~~l~~~~   94 (112)
T PF13551_consen   31 RWLKRYREGGIEGLLPRKPRGGRPRKRLSEEQRAQLIELLRENPPEGRSRWTLEELAEWLIEEE   94 (112)
T ss_pred             HHHHHHHcccHHHHHhccccCCCCCCCCCHHHHHHHHHHHHHCCCCCCCcccHHHHHHHHHHhc
Confidence            4678999999  7888 555555554589999999999999998     467788898886554

>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=96.88  E-value=0.0023  Score=42.79  Aligned_cols=54  Identities=24%  Similarity=0.198  Sum_probs=42.5

Q ss_pred             cchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHH-hcCc
Q psy2182           4 EEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLL-AEGV   58 (67)
Q Consensus         4 L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~-~~Gv   58 (67)
                      ++||.|||+..|...||.+|+..+++..+.++...++.. .++-|+++.|. +.||
T Consensus        42 v~r~~e~G~~l~~~~~~GrP~kl~~~q~~~l~e~~~~k~-wTl~~~~~~l~~e~gv   96 (138)
T COG3415          42 VRRYRETGLDLPPKPRKGRPRKLSEEQLEILLERLREKD-WTLKELVEELGLEFGV   96 (138)
T ss_pred             HHHhccccccccCccCCCCCcccCHHHHHHHHHHHhccc-chHHHHHHHHhhhcCe
Confidence            689999999999999999999888887777777655543 77777777765 5555

>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition

Probab=95.63  E-value=0.017  Score=36.60  Aligned_cols=41  Identities=24%  Similarity=0.460  Sum_probs=33.2

Q ss_pred             hhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHH
Q psy2182           7 YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRL   53 (67)
Q Consensus         7 y~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L   53 (67)
                      ..+||++.|++-|+.  +.  +  .+.+.++..++|+++++||.++|
T Consensus        41 ~~~~G~~~~k~r~~~--Ki--d--~~~L~~~v~~~pd~tl~Ela~~l   81 (119)
T PF01710_consen   41 RKETGDLEPKPRGRK--KI--D--RDELKALVEENPDATLRELAERL   81 (119)
T ss_pred             hcccccccccccccc--cc--c--HHHHHHHHHHCCCcCHHHHHHHc
Confidence            578999999997766  33  2  45688888999999999998876

This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF13072 DUF3936: Protein of unknown function (DUF3936)

Probab=89.66  E-value=0.25  Score=26.80  Aligned_cols=11  Identities=55%  Similarity=0.924  Sum_probs=9.4

Q ss_pred             HHHHHHHHHhc
Q psy2182          46 AWEIRDRLLAE   56 (67)
Q Consensus        46 awEiR~~L~~~   56 (67)
                      |||||+.|.+=
T Consensus        16 AWeIr~~Lkey   26 (38)
T PF13072_consen   16 AWEIRAKLKEY   26 (38)
T ss_pred             HHHHHHHHHHH
Confidence            89999999763

>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases

Probab=80.52  E-value=2.2  Score=29.59  Aligned_cols=34  Identities=15%  Similarity=0.037  Sum_probs=30.5

Q ss_pred             CCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHh
Q psy2182          22 KPRVATNGVVTKIADYKRECPSIFAWEIRDRLLA   55 (67)
Q Consensus        22 kpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~   55 (67)
                      -.+.++|-|+-.+.-+++++|++..-|||+.|++
T Consensus       261 GTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~  294 (297)
T cd04059         261 GTSAAAPLAAGVIALMLEANPNLTWRDVQHILAL  294 (297)
T ss_pred             CcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHH
Confidence            3578899999999999999999999999999975

Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	67
6pax_A	133	Crystal Structure Of The Human Pax-6 Paired Domain-		1e-25
2k27_A	159	Solution Structure Of Human Pax8 Paired Box Domain		3e-22
1k78_A	149	Pax5(1-149)+ets-1(331-440)+dna Length = 149		1e-21
1pdn_C	128	Crystal Structure Of A Paired Domain-Dna Complex At		4e-15

>pdb|6PAX|A Chain A, Crystal Structure Of The Human Pax-6 Paired Domain-Dna Complex Reveals A General Model For Pax Protein-Dna Interactions Length = 133

Iteration: 1
 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/61 (83%), Positives = 56/61 (91%)
Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YY TGSI+PRAIGGSKPRVAT  VV+KIA YK+ECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct: 57  YYATGSIRPRAIGGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIPS 116
Query: 67  L 67
           +
Sbjct: 117 V 117

>pdb|2K27|A Chain A, Solution Structure Of Human Pax8 Paired Box Domain Length = 159

Iteration: 1
 Score =  100 bits (248), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+P  IGGSKP+VAT  VV KI DYKR+ P++FAWEIRDRLLAEGVC+ND +PS
Sbjct: 65  YYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPS 124
Query: 67  L 67
           +
Sbjct: 125 V 125

>pdb|1K78|A Chain A, Pax5(1-149)+ets-1(331-440)+dna Length = 149

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKP  IGGSKP+VAT  VV KIA+YKR+ P++FAWEIRDRLLAE VC+ND +PS
Sbjct: 72  YYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPS 131
Query: 67  L 67
           +
Sbjct: 132 V 132

>pdb|1PDN|C Chain C, Crystal Structure Of A Paired Domain-Dna Complex At 2.5 Angstroms Resolution Reveals Structural Basis For Pax Developmental Mutations Length = 128

Iteration: 1
 Score = 76.3 bits (186), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/61 (54%), Positives = 45/61 (73%)
Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           Y ETGSI+P  IGGSKPR+AT  +  +I +YKR  P +F+WEIR++L+ EGVC+    PS
Sbjct: 57  YQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPS 116
Query: 67  L 67
           +
Sbjct: 117 V 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	67
1pdn_C	128	Protein (PRD paired); protein-DNA complex, double	9e-21
1k78_A	149	Paired box protein PAX5; paired domain, ETS domain	5e-20
2k27_A	159	Paired box protein PAX-8; paired domain, solution	7e-20
1ic8_A	194	Hepatocyte nuclear factor 1-alpha; transcription r	1e-05
2h8r_A	221	Hepatocyte nuclear factor 1-beta; trasncription fa	5e-04

>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5 Length = 128

 Score = 77.8 bits (191), Expect = 9e-21
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           Y ETGSI+P  IGGSKPR+AT  +  +I +YKR  P +F+WEIR++L+ EGVC+    PS
Sbjct: 57  YQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPS 116

>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A Length = 149

 Score = 76.4 bits (187), Expect = 5e-20
 Identities = 45/60 (75%), Positives = 52/60 (86%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSIKP  IGGSKP+VAT  VV KIA+YKR+ P++FAWEIRDRLLAE VC+ND +PS
Sbjct: 72  YYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPS 131

>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens} Length = 159

 Score = 76.4 bits (187), Expect = 7e-20
 Identities = 45/60 (75%), Positives = 52/60 (86%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           YYETGSI+P  IGGSKP+VAT  VV KI DYKR+ P++FAWEIRDRLLAEGVC+ND +PS
Sbjct: 65  YYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPS 124

>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 Length = 194

 Score = 39.5 bits (91), Expect = 1e-05
 Identities = 4/36 (11%), Positives = 12/36 (33%)

Query: 32 TKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL 67
            +    +E P   A  ++  L    +   + + + 
Sbjct: 18 AVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTT 53

>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens} Length = 221

 Score = 35.0 bits (79), Expect = 5e-04
 Identities = 4/28 (14%), Positives = 9/28 (32%)

Query: 32 TKIADYKRECPSIFAWEIRDRLLAEGVC 59
           ++     E P   A  I+  +    + 
Sbjct: 19 AEVDRMLSEDPWRAAKMIKGYMQQHNIP 46

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	67
1pdn_C	128	Protein (PRD paired); protein-DNA complex, double	98.44
1k78_A	149	Paired box protein PAX5; paired domain, ETS domain	98.42
2k27_A	159	Paired box protein PAX-8; paired domain, solution	98.36
1ic8_A	194	Hepatocyte nuclear factor 1-alpha; transcription r	97.25
2pjp_A	121	Selenocysteine-specific elongation factor; SELB, p	95.81
2h8r_A	221	Hepatocyte nuclear factor 1-beta; trasncription fa	95.45
1u78_A	141	TC3 transposase, transposable element TC3 transpos	94.28
3hot_A	345	Transposable element mariner, complete CDS; protei	93.45
2zko_A	73	NS1, NS1A, non-structural protein 1; dsRNA, protei	88.86

>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5

Probab=98.44  E-value=2.9e-07  Score=54.76  Aligned_cols=58  Identities=53%  Similarity=1.020  Sum_probs=50.8

Q ss_pred             cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcC
Q psy2182           2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVC   59 (67)
Q Consensus         2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc   59 (67)
                      +.+.+|.++|...|..-+|.+|+..+++..+.|.++..++|+.+.+||.+.|.+.|++
T Consensus        52 ~w~~~~~~~g~~~~~~~~g~~~~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~  109 (128)
T 1pdn_C           52 KILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVC  109 (128)
T ss_dssp             HHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSS
T ss_pred             HHHHHHHhhCCcccccCCCCCCCcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCc
Confidence            3578899999999888777677777888999999999999999999999999988874

>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A

Probab=98.42  E-value=8.2e-07  Score=55.48  Aligned_cols=60  Identities=70%  Similarity=1.113  Sum_probs=52.2

Q ss_pred             cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCC
Q psy2182           2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNN   61 (67)
Q Consensus         2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~   61 (67)
                      +.+.+|.++|.+.|..-+|.+|+..+++..+.|.++..++|..++|||.++|.++++|..
T Consensus        67 rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~  126 (149)
T 1k78_A           67 KILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDN  126 (149)
T ss_dssp             HHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhccccc
Confidence            357899999999998888876777889999999999999999999999999999876654

>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}

Probab=98.36  E-value=8.9e-07  Score=56.11  Aligned_cols=61  Identities=70%  Similarity=1.159  Sum_probs=52.2

Q ss_pred             cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCCC
Q psy2182           2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNND   62 (67)
Q Consensus         2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~~   62 (67)
                      +.+.+|.++|.+.|..-+|.+|+..+++..+.|.++..++|+.+.|||.++|.++++|...
T Consensus        60 rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~  120 (159)
T 2k27_A           60 KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDND  120 (159)
T ss_dssp             HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTT
T ss_pred             HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccC
Confidence            4578999999999988788667777888899999999999999999999999998876543

>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1

Probab=97.25  E-value=0.00011  Score=50.11  Aligned_cols=34  Identities=12%  Similarity=0.047  Sum_probs=31.3

Q ss_pred             CHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCC
Q psy2182          27 TNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCN   60 (67)
Q Consensus        27 t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~   60 (67)
                      .++|+.+|++|++++|.+|+|+|++.|.+.|++.
T Consensus        13 ~~~~~~~ie~~~~e~p~~l~~~Ik~~l~~~gitQ   46 (194)
T 1ic8_A           13 AAHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQ   46 (194)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCH
T ss_pred             hHHHHHHHHHHHccCHHHHHHHHHHHHHHcCCCH
Confidence            3579999999999999999999999999999863

>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}

Probab=95.81  E-value=0.0015  Score=40.27  Aligned_cols=51  Identities=24%  Similarity=0.210  Sum_probs=47.0

Q ss_pred             ccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHH
Q psy2182           3 SEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRL   53 (67)
Q Consensus         3 ~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L   53 (67)
                      +|..+.++|.+.|-.-|..-.+.+..++++.|.++-++++.+++.|.||.|
T Consensus        40 ~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~l   90 (121)
T 2pjp_A           40 TLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRL   90 (121)
T ss_dssp             HHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHH
T ss_pred             HHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHHCCCccHHHHHHHH
Confidence            577889999999988888888888999999999999999999999999998

>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}

Probab=95.45  E-value=0.0055  Score=42.75  Aligned_cols=34  Identities=12%  Similarity=0.024  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCC
Q psy2182          27 TNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCN   60 (67)
Q Consensus        27 t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~   60 (67)
                      .++++..|.+|.+++|.+|+|+||+.|...|++.
T Consensus        14 ~~~~~~~Ve~l~~~~~~~~~~~Ik~~r~~~gltQ   47 (221)
T 2h8r_A           14 AAEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQ   47 (221)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTCCH
T ss_pred             hHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCH
Confidence            3578999999999999999999999999999874

>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2

Probab=94.28  E-value=0.022  Score=34.03  Aligned_cols=47  Identities=13%  Similarity=0.053  Sum_probs=35.0

Q ss_pred             cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHH
Q psy2182           2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRL   53 (67)
Q Consensus         2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L   53 (67)
                      +.+.+|.+.|...+   .| +|+..+++....|.++ .++|...+.||.+.|
T Consensus        41 r~~~~~~~~g~~~~---~g-r~~~l~~~~~~~i~~~-~~~~~~s~~~i~~~l   87 (141)
T 1u78_A           41 VYLKDPVSYGTSKR---AP-RRKALSVRDERNVIRA-ASNSCKTARDIRNEL   87 (141)
T ss_dssp             HHHHSGGGTTCCCC---CC-CCCSSCHHHHHHHHHH-HHHCCCCHHHHHHHT
T ss_pred             HHHHcccccCCcCC---CC-CCCcCCHHHHHHHHHH-HhCCCCCHHHHHHHH
Confidence            35678888886654   23 4556678888888888 677999999998887

>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*

Probab=93.45  E-value=0.11  Score=35.38  Aligned_cols=47  Identities=11%  Similarity=0.181  Sum_probs=34.4

Q ss_pred             cccchhhhcc--cccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHH
Q psy2182           2 YSEEGYYETG--SIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRL   53 (67)
Q Consensus         2 ~~L~Ry~eTG--si~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L   53 (67)
                      +++.||.+ |  ++.+.+-+| +|+..++   +.|.++..++|..++.||.+.|
T Consensus        48 ~w~~r~~~-g~~~l~~~~r~g-rp~~~~~---~~i~~~v~~~~~~t~~~ia~~l   96 (345)
T 3hot_A           48 RWFQRFKS-GDFDVDDKEHGK-PPKRYED---AELQALLDEDDAQTQKQLAEQL   96 (345)
T ss_dssp             HHHHHHTT-CCCCCSCCCCCC-CCCSSCH---HHHHHHHHHCSCCCHHHHHHHT
T ss_pred             HHHHHHhC-CCccccCCCCCC-CCCcccH---HHHHHHHHhCccchHHHHHHHH
Confidence            35678886 6  578888888 5555554   4455566789999999998877

>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A

Probab=88.86  E-value=0.15  Score=30.01  Aligned_cols=19  Identities=21%  Similarity=0.627  Sum_probs=17.2

Q ss_pred             CccHHHHHHHHHhcCcCCC
Q psy2182          43 SIFAWEIRDRLLAEGVCNN   61 (67)
Q Consensus        43 ~ifawEiR~~L~~~Gvc~~   61 (67)
                      ++|+|-+|.+++.+++++.
T Consensus        15 dcflWHvrkrfadq~lgDA   33 (73)
T 2zko_A           15 DCFLWHVRKRVADQELGDA   33 (73)
T ss_dssp             HHHHHHHHHHHHHTTCCCH
T ss_pred             eehhHHHHHHhhhcccccc
Confidence            5899999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	67
d1k78a2	61	a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [Ta	4e-29
d6paxa2	65	a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [Ta	3e-28
d1pdnc_	123	a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Dros	1e-18

>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 61

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (239), Expect = 4e-29
 Identities = 36/49 (73%), Positives = 43/49 (87%)

Query: 18 IGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
          IGGSKP+VAT  VV KIA+YKR+ P++FAWEIRDRLLAE VC+ND +PS
Sbjct: 2  IGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPS 50

>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (233), Expect = 3e-28
 Identities = 41/48 (85%), Positives = 44/48 (91%)

Query: 19 GGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
          GGSKPRVAT  VV+KIA YK+ECPSIFAWEIRDRLL+EGVC NDNIPS
Sbjct: 1  GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIPS 48

>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 123

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Paired protein (prd)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 71.1 bits (174), Expect = 1e-18
 Identities = 33/60 (55%), Positives = 44/60 (73%)

Query: 7   YYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPS 66
           Y ETGSI+P  IGGSKPR+AT  +  +I +YKR  P +F+WEIR++L+ EGVC+    PS
Sbjct: 56  YQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPS 115

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	67
d1k78a2	61	Pax-5 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d6paxa2	65	Pax-6 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1pdnc_	123	Paired protein (prd) {Fruit fly (Drosophila melano	99.85
d1aila_	70	N-terminal, RNA-binding domain of nonstructural pr	89.09
d2ixta1	309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	86.59

>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-32  Score=159.74  Aligned_cols=51  Identities=71%  Similarity=1.205  Sum_probs=49.9

Q ss_pred             ccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCCCCCCCC
Q psy2182          17 AIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL   67 (67)
Q Consensus        17 ~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~~~~psv   67 (67)
                      .|||||||++||+|+++|++||++||+||||||||+|+++|+|+++|||||
T Consensus         1 vIGGSKPrvaTP~V~~kI~~yK~enP~iFaWEIRd~Li~egiC~~~nvPSv   51 (61)
T d1k78a2           1 VIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSV   51 (61)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCH
T ss_pred             CCCCCCCCcCCHHHHHHHHHHHhcCCcccHHHHHHHHHHcCCCCCCCCCch
Confidence            489999999999999999999999999999999999999999999999996

>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Pax-6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5.8e-31  Score=154.81  Aligned_cols=49  Identities=84%  Similarity=1.396  Sum_probs=48.4

Q ss_pred             CCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCCCCCCCC
Q psy2182          19 GGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL   67 (67)
Q Consensus        19 GGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~~~~psv   67 (67)
                      ||||||++||+|+++|++||++||+||||||||+|+++|||+++|||||
T Consensus         1 GGSKPrvaTP~V~~kI~~yK~enP~iFaWEIRd~Li~egiC~~~~vPSv   49 (65)
T d6paxa2           1 GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGVCTNDNIPSV   49 (65)
T ss_dssp             SCCCCSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTCCCH
T ss_pred             CCCCcCcCCHHHHHHHHHHHHhCCccchHHHHHHHHHcCCCCCCCCCch
Confidence            8999999999999999999999999999999999999999999999996

>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Paired domain
domain: Paired protein (prd)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.85  E-value=2.3e-22  Score=127.37  Aligned_cols=66  Identities=50%  Similarity=0.969  Sum_probs=64.7

Q ss_pred             cccchhhhcccccccccCCCCCCcCCHHHHHHHHHHHhhCCCccHHHHHHHHHhcCcCCCCCCCCC
Q psy2182           2 YSEEGYYETGSIKPRAIGGSKPRVATNGVVTKIADYKRECPSIFAWEIRDRLLAEGVCNNDNIPSL   67 (67)
Q Consensus         2 ~~L~Ry~eTGsi~Pg~iGGskpk~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~~Gvc~~~~~psv   67 (67)
                      |||.||++||++.|++.||++|+..++++++.|..+++++|++|+|||+++|+.+|+|+.+++|||
T Consensus        51 k~l~r~~~~G~~~~~~~~~~rpr~~t~~~~~~I~~~~~~~P~~t~~El~~~L~~egv~~~~~~pSv  116 (123)
T d1pdnc_          51 KILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSV  116 (123)
T ss_dssp             HHHHHHHHHCCSSCCCCSCCCCCSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCH
T ss_pred             HHHHHHHccCCcCcCCCCCCCCCCCCHHHHHHHHHHHHhCCCccHHHHHHHHHHcCCCCCCCCCCh
Confidence            789999999999999999999999999999999999999999999999999999999999999996

>d1aila_ a.16.1.1 (A:) N-terminal, RNA-binding domain of nonstructural protein NS1 {Influenza A virus [TaxId: 11320]}

class: All alpha proteins
fold: S15/NS1 RNA-binding domain
superfamily: S15/NS1 RNA-binding domain
family: N-terminal, RNA-binding domain of nonstructural protein NS1
domain: N-terminal, RNA-binding domain of nonstructural protein NS1
species: Influenza A virus [TaxId: 11320]

Probab=89.09  E-value=0.069  Score=29.90  Aligned_cols=19  Identities=16%  Similarity=0.623  Sum_probs=17.1

Q ss_pred             CccHHHHHHHHHhcCcCCC
Q psy2182          43 SIFAWEIRDRLLAEGVCNN   61 (67)
Q Consensus        43 ~ifawEiR~~L~~~Gvc~~   61 (67)
                      ++|+|-+|.+++.+++++.
T Consensus        12 dcfLWHvRkrfad~~lgDA   30 (70)
T d1aila_          12 DCFLWHVRKQVVDQELGDA   30 (70)
T ss_dssp             HHHHHHHHHHHHHTTCCCH
T ss_pred             hhHHHHHHHHHhhccccCC
Confidence            5899999999999999863

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Sphericase
species: Bacillus sphaericus [TaxId: 1421]

Probab=86.59  E-value=0.24  Score=31.35  Aligned_cols=32  Identities=28%  Similarity=0.218  Sum_probs=29.0

Q ss_pred             CcCCHHHHHHHHHHHhhCCCccHHHHHHHHHh
Q psy2182          24 RVATNGVVTKIADYKRECPSIFAWEIRDRLLA   55 (67)
Q Consensus        24 k~~t~~v~~~I~~~k~~~p~ifawEiR~~L~~   55 (67)
                      +.++|.|.-.+.-+++.+|++...|||+.|+.
T Consensus       250 S~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~  281 (309)
T d2ixta1         250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQE  281 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHCCCCCHHHHHHHHHh
Confidence            45788999999999999999999999999986