Psyllid ID: psy2185

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MSEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRFA
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccHHcHHHHccccccccHHHHHHHcccHHHHHHHHHcccccccHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccccccccHHHHHHHHccHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
mseynnlkrksrdmETETEDELLMLTKDNETALhcaaqyghtpvvsqllehscdptirnsrhETALDLAAQYGRLETVDTLVRTHPGLIQAYNAraqstlfpasplhlasrnghrfylqqkvqsdfcsskvtrrfa
Flexible Loop (DISEMBL)
mseynnlkrksrdmeteTEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQqkvqsdfcsskvtrrfa
Low Complexity Region (SEG)
MSEYNNLKRKSRdmetetedellmltKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRFA
Disordered region (IsUnstruct)
************************LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKV**************
Disordered Region (DISOPRED)
******LKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKV*R***
Disordered Region (DISEMBL)
******************EDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQS************
Disordered Region (DISPRO)
MS**NNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDF**********
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q92625	1134	Ankyrin repeat and SAM do	yes	N/A	0.625	0.074	0.565	2e-22
P59672	1150	Ankyrin repeat and SAM do	yes	N/A	0.625	0.073	0.565	3e-22
P0C6S7	1260	Ankyrin repeat and steril	no	N/A	0.625	0.067	0.565	8e-22
Q7Z6G8	1248	Ankyrin repeat and steril	no	N/A	0.625	0.068	0.565	9e-22
Q8BIZ1	1259	Ankyrin repeat and steril	no	N/A	0.625	0.067	0.565	9e-22
A5PMU4	1280	Ankyrin repeat and steril	yes	N/A	0.676	0.071	0.515	1e-19
Q8WXE0	1202	Caskin-2 OS=Homo sapiens	no	N/A	0.772	0.087	0.351	1e-11
Q8VHK1	1201	Caskin-2 OS=Mus musculus	no	N/A	0.720	0.081	0.366	1e-11
Q6DD51	1205	Caskin-2 OS=Xenopus laevi	N/A	N/A	0.772	0.087	0.351	1e-10
Q8VHK2	1430	Caskin-1 OS=Rattus norveg	no	N/A	0.647	0.061	0.391	1e-08

>sp|Q92625|ANS1A_HUMAN Ankyrin repeat and SAM domain-containing protein 1A OS=Homo sapiens GN=ANKS1A PE=1 SV=4

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 62/92 (67%), Gaps = 7/92 (7%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           DNETALHCAAQYGHT VV  LLE   DPT+RN++ ET LDLAA YGRLE V  L+  HP 
Sbjct: 148 DNETALHCAAQYGHTEVVKVLLEELTDPTMRNNKFETPLDLAALYGRLEVVKMLLNAHPN 207

Query: 88  LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           L+     +        +PLHLA+RNGH+  +Q
Sbjct: 208 LLSCNTKK-------HTPLHLAARNGHKAVVQ 232

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.
Homo sapiens (taxid: 9606)

>sp|P59672|ANS1A_MOUSE Ankyrin repeat and SAM domain-containing protein 1A OS=Mus musculus GN=Anks1a PE=1 SV=3

 Score =  103 bits (258), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 62/92 (67%), Gaps = 7/92 (7%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           DNETALHCAAQYGHT VV  LLE   DPT+RN++ ET LDLAA YGRLE V  L+  HP 
Sbjct: 165 DNETALHCAAQYGHTEVVKALLEELTDPTMRNNKFETPLDLAALYGRLEVVKLLLGAHPN 224

Query: 88  LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           L+     +        +PLHLA+RNGH+  +Q
Sbjct: 225 LLSCSTRK-------HTPLHLAARNGHKAVVQ 249

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Mus musculus (taxid: 10090)

>sp|P0C6S7|ANS1B_RAT Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Rattus norvegicus GN=Anks1b PE=1 SV=1

 Score =  102 bits (254), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 63/92 (68%), Gaps = 7/92 (7%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           +NETALHCAAQYGH+ VV+ LLE   DPTIRNS+ ET LDLAA YGRL  V  ++  HP 
Sbjct: 127 ENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMIISAHPN 186

Query: 88  LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           L+   N R        +PLHLA+RNGH+  +Q
Sbjct: 187 LMSC-NTRKH------TPLHLAARNGHKAVVQ 211

Isoform 3 can regulate global protein synthesis by altering nucleolar numbers.

Rattus norvegicus (taxid: 10116)

>sp|Q7Z6G8|ANS1B_HUMAN Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens GN=ANKS1B PE=1 SV=2

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 63/92 (68%), Gaps = 7/92 (7%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           +NETALHCAAQYGH+ VV+ LLE   DPTIRNS+ ET LDLAA YGRL  V  ++  HP 
Sbjct: 127 ENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMIISAHPN 186

Query: 88  LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           L+   N R        +PLHLA+RNGH+  +Q
Sbjct: 187 LMSC-NTRKH------TPLHLAARNGHKAVVQ 211

Isoform 4 may play a role as a modulator of APP processing. Overexpression can down-regulate APP processing.

Homo sapiens (taxid: 9606)

>sp|Q8BIZ1|ANS1B_MOUSE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Mus musculus GN=Anks1b PE=1 SV=3

 Score =  102 bits (253), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 63/92 (68%), Gaps = 7/92 (7%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           +NETALHCAAQYGH+ VV+ LLE   DPTIRNS+ ET LDLAA YGRL  V  ++  HP 
Sbjct: 127 ENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMIISAHPN 186

Query: 88  LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           L+   N R        +PLHLA+RNGH+  +Q
Sbjct: 187 LMSC-NTRKH------TPLHLAARNGHKAVVQ 211

Isoform 2 may participate in the regulation of nucleoplasmic coilin protein interactions in neuronal and transformed cells.

Mus musculus (taxid: 10090)

>sp|A5PMU4|ANS1B_DANRE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Danio rerio GN=anks1b PE=3 SV=1

 Score = 95.5 bits (236), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 65/99 (65%), Gaps = 7/99 (7%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           + ETALHCAAQYGH+ VV  LL+   DP++RNSR ET LDLAA YGRL+ V  L+  HP 
Sbjct: 126 EKETALHCAAQYGHSEVVRVLLQELTDPSMRNSRGETPLDLAALYGRLQVVRMLLTAHPN 185

Query: 88  LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDF 126
           L+   N R        +PLHLA+RNGH   +Q  +++D 
Sbjct: 186 LMSC-NTRKH------TPLHLAARNGHYATVQVLLEADM 217

Danio rerio (taxid: 7955)

>sp|Q8WXE0|CSKI2_HUMAN Caskin-2 OS=Homo sapiens GN=CASKIN2 PE=1 SV=2

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 61/108 (56%), Gaps = 3/108 (2%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           D +  LH AAQYGH  V   LL+H  +P + N   +T LDLA ++GRL+    L+ +H  
Sbjct: 114 DGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNKAKKTPLDLACEFGRLKVAQLLLNSH-L 172

Query: 88  LIQAYNARAQSTLFP--ASPLHLASRNGHRFYLQQKVQSDFCSSKVTR 133
            +      A+    P   +PLHLA++NGHR  ++Q +++    ++ T+
Sbjct: 173 CVALLEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLRAGIEINRQTK 220

Homo sapiens (taxid: 9606)

>sp|Q8VHK1|CSKI2_MOUSE Caskin-2 OS=Mus musculus GN=Caskin2 PE=1 SV=3

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 57/101 (56%), Gaps = 3/101 (2%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           D +  LH AAQYGH  V   LL+H  +P + N   +T LDLA ++GRL+    L+ +H  
Sbjct: 114 DGQIPLHLAAQYGHYEVSEMLLQHQSNPCLVNKLKKTPLDLACEFGRLKVAQLLLNSH-L 172

Query: 88  LIQAYNARAQSTLFP--ASPLHLASRNGHRFYLQQKVQSDF 126
            +      A+    P   +PLHLA++NGHR  ++Q +++  
Sbjct: 173 CVALLEGEAKDPCDPNYTTPLHLAAKNGHREVIRQLLKAGI 213

Mus musculus (taxid: 10090)

>sp|Q6DD51|CSKI2_XENLA Caskin-2 OS=Xenopus laevis GN=caskin2 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/108 (35%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH-- 85
           D +  LH AAQYGH  V   LL+H  +P   N   +T LDLA ++GR++ V  L+ +H  
Sbjct: 114 DGQIPLHLAAQYGHYEVSETLLQHQSNPCHVNKGKKTPLDLACEFGRVKVVQLLLNSHLC 173

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTR 133
             L++  +       F  +PLHLA++NGH   ++  ++     +KVT+
Sbjct: 174 VSLLEGTSKDPTDPNF-TTPLHLAAKNGHLEVIRLLLKLGIEINKVTK 220

Xenopus laevis (taxid: 8355)

>sp|Q8VHK2|CSKI1_RAT Caskin-1 OS=Rattus norvegicus GN=Caskin1 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 9/97 (9%)

Query: 33  LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQA- 91
           LH AAQ+GH  V   LL+H  +P I ++  +T LDLA ++GR+  V  L+ ++  +  A 
Sbjct: 119 LHLAAQHGHYDVSEMLLQHQSNPCIVDNSGKTPLDLACEFGRVGVVQLLLSSN--MCAAL 176

Query: 92  YNARAQSTLFP--ASPLHLASRNGH----RFYLQQKV 122
              R   T  P   SPLHLA++NGH    R  LQ  +
Sbjct: 177 LEPRPGDTTDPNGTSPLHLAAKNGHIDIIRLLLQAGI 213

May link the scaffolding protein CASK to downstream intracellular effectors.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
307189167	808	Ankyrin repeat and sterile alpha motif d	0.705	0.118	0.697	2e-33
332022176	769	Ankyrin repeat and sterile alpha motif d	0.705	0.124	0.697	2e-33
242006161	845	hspc200, putative [Pediculus humanus cor	0.705	0.113	0.711	4e-33
307211178	812	Ankyrin repeat and sterile alpha motif d	0.705	0.118	0.697	7e-33
189236470	1299	PREDICTED: similar to CG4393 CG4393-PA [	0.75	0.078	0.650	4e-32
270005360	1301	hypothetical protein TcasGA2_TC007410 [T	0.75	0.078	0.650	5e-32
345496365	797	PREDICTED: hypothetical protein LOC10011	0.654	0.111	0.717	2e-31
328785617	1480	PREDICTED: ankyrin repeat and SAM domain	0.705	0.064	0.677	2e-31
340715058	1476	PREDICTED: hypothetical protein LOC10064	0.705	0.065	0.677	2e-31
350414680	1476	PREDICTED: hypothetical protein LOC10074	0.705	0.065	0.677	2e-31

>gi|307189167|gb|EFN73615.1| Ankyrin repeat and sterile alpha motif domain-containing protein 1B [Camponotus floridanus]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 81/96 (84%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           + TKDNETALHCAAQYGHT VV+QLL++ CDP+IRNSR E+ALDLAAQYGRLETV+ LVR
Sbjct: 113 LATKDNETALHCAAQYGHTEVVAQLLQYGCDPSIRNSRGESALDLAAQYGRLETVELLVR 172

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           THP LI++    + S +FP +PLHLASRNGHR  ++
Sbjct: 173 THPELIESLRNSSSSLIFPHTPLHLASRNGHRAVVE 208

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022176|gb|EGI62493.1| Ankyrin repeat and sterile alpha motif domain-containing protein 1B [Acromyrmex echinatior]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 81/96 (84%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           + TKDNETALHCAAQYGHT VV+QLL++ CDP+IRNSR E+ALDLAAQYGRLETV+ LVR
Sbjct: 72  LATKDNETALHCAAQYGHTEVVAQLLQYGCDPSIRNSRGESALDLAAQYGRLETVELLVR 131

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           THP LI++    + S +FP +PLHLASRNGHR  ++
Sbjct: 132 THPELIESLRNSSSSLIFPHTPLHLASRNGHRAVVE 167

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006161|ref|XP_002423923.1| hspc200, putative [Pediculus humanus corporis] gi|212507186|gb|EEB11185.1| hspc200, putative [Pediculus humanus corporis]

 Score =  145 bits (367), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 82/97 (84%), Gaps = 1/97 (1%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           + TKD+ETALHCAAQYGHT +V+ LLEHSCDPTIRNSR ETALDLAAQYGRLETV+ LVR
Sbjct: 82  LTTKDHETALHCAAQYGHTEIVTLLLEHSCDPTIRNSREETALDLAAQYGRLETVELLVR 141

Query: 84  THPGLIQAYNARAQST-LFPASPLHLASRNGHRFYLQ 119
           THP LIQ ++   +S  +FP +PLHLASRNGH+  ++
Sbjct: 142 THPELIQPFSRSYKSGCVFPHTPLHLASRNGHKLVVE 178

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307211178|gb|EFN87391.1| Ankyrin repeat and sterile alpha motif domain-containing protein 1B [Harpegnathos saltator]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/96 (69%), Positives = 79/96 (82%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           + TKDNETALHCAAQYGHT VV+QLL + CDP+IRNSR E+ALDLAAQYGRLETV+ LVR
Sbjct: 113 LATKDNETALHCAAQYGHTEVVAQLLHYGCDPSIRNSRGESALDLAAQYGRLETVELLVR 172

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           THP LI+     + S +FP +PLHLASRNGHR  ++
Sbjct: 173 THPELIEPLRNSSSSLIFPHTPLHLASRNGHRAVVE 208

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236470|ref|XP_974604.2| PREDICTED: similar to CG4393 CG4393-PA [Tribolium castaneum]

 Score =  142 bits (358), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 81/103 (78%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           + T+D+ETALHCAAQYGHT VVS LLEH+CDP IRN R ETALDLAAQYGRLETV+ LVR
Sbjct: 112 LTTQDDETALHCAAQYGHTAVVSLLLEHACDPGIRNCRGETALDLAAQYGRLETVELLVR 171

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDF 126
           T P LIQ     A  T++P +PLHLASRNGH+  ++  +++ F
Sbjct: 172 TDPSLIQCLKRAAPDTVYPHTPLHLASRNGHKAVVEVLLRAGF 214

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005360|gb|EFA01808.1| hypothetical protein TcasGA2_TC007410 [Tribolium castaneum]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 81/103 (78%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           + T+D+ETALHCAAQYGHT VVS LLEH+CDP IRN R ETALDLAAQYGRLETV+ LVR
Sbjct: 112 LTTQDDETALHCAAQYGHTAVVSLLLEHACDPGIRNCRGETALDLAAQYGRLETVELLVR 171

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDF 126
           T P LIQ     A  T++P +PLHLASRNGH+  ++  +++ F
Sbjct: 172 TDPSLIQCLKRAAPDTVYPHTPLHLASRNGHKAVVEVLLRAGF 214

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496365|ref|XP_001602889.2| PREDICTED: hypothetical protein LOC100119039 [Nasonia vitripennis]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/92 (71%), Positives = 79/92 (85%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           + TKDNETALHCAAQYGHT VV+QLL++ CDP+IRNSR E+ALDLAAQYGRL TV+ LVR
Sbjct: 99  LTTKDNETALHCAAQYGHTEVVAQLLQYGCDPSIRNSRGESALDLAAQYGRLGTVELLVR 158

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
           THP LI++  + + S +FP +PLHLASRNGHR
Sbjct: 159 THPELIESLRSSSSSLIFPHTPLHLASRNGHR 190

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785617|ref|XP_392417.4| PREDICTED: ankyrin repeat and SAM domain-containing protein 1A-like [Apis mellifera]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 77/96 (80%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           + TKDNETALHCAAQYGHT VV+QLL++ CDP+IRNSR E+ALDLAAQYGRLETV  LV 
Sbjct: 113 LTTKDNETALHCAAQYGHTEVVAQLLQYGCDPSIRNSRGESALDLAAQYGRLETVQLLVS 172

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           T+P LI      + S +FP +PLHLASRNGHR  ++
Sbjct: 173 TYPELIVPLRNSSSSVIFPHTPLHLASRNGHRAVVE 208

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715058|ref|XP_003396037.1| PREDICTED: hypothetical protein LOC100649175 [Bombus terrestris]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 77/96 (80%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           + TKDNETALHCAAQYGHT VV+QLL++ CDP+IRNSR E+ALDLAAQYGRLETV  LV 
Sbjct: 113 LTTKDNETALHCAAQYGHTEVVAQLLQYGCDPSIRNSRGESALDLAAQYGRLETVQLLVS 172

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           T+P LI      + S +FP +PLHLASRNGHR  ++
Sbjct: 173 TYPELIVPLRNSSSSVIFPHTPLHLASRNGHRAVVE 208

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414680|ref|XP_003490386.1| PREDICTED: hypothetical protein LOC100749056 [Bombus impatiens]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 77/96 (80%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           + TKDNETALHCAAQYGHT VV+QLL++ CDP+IRNSR E+ALDLAAQYGRLETV  LV 
Sbjct: 113 LTTKDNETALHCAAQYGHTEVVAQLLQYGCDPSIRNSRGESALDLAAQYGRLETVQLLVS 172

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           T+P LI      + S +FP +PLHLASRNGHR  ++
Sbjct: 173 TYPELIVPLRNSSSSVIFPHTPLHLASRNGHRAVVE 208

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
UNIPROTKB|F1MPD8	259	LOC516896 "Uncharacterized pro	0.625	0.328	0.565	3.9e-21
UNIPROTKB|F1MHL2	1138	ANKS1A "Uncharacterized protei	0.735	0.087	0.523	4.9e-21
UNIPROTKB|F1RZ13	1153	ANKS1A "Uncharacterized protei	0.933	0.110	0.440	6.4e-21
UNIPROTKB|F1SQT7	209	F1SQT7 "Uncharacterized protei	0.595	0.387	0.579	8e-21
UNIPROTKB|Q92625	1134	ANKS1A "Ankyrin repeat and SAM	0.625	0.074	0.576	1.7e-20
RGD|1309183	1125	Anks1a "ankyrin repeat and ste	0.625	0.075	0.576	2.7e-20
UNIPROTKB|E1C898	1155	ANKS1A "Uncharacterized protei	0.595	0.070	0.590	3.6e-20
UNIPROTKB|Q7Z6G8	1248	ANKS1B "Ankyrin repeat and ste	0.625	0.068	0.565	1.1e-19
MGI|MGI:1924781	1259	Anks1b "ankyrin repeat and ste	0.625	0.067	0.565	1.1e-19
RGD|1565556	1260	Anks1b "ankyrin repeat and ste	0.625	0.067	0.565	1.1e-19

UNIPROTKB|F1MPD8 LOC516896 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 52/92 (56%), Positives = 63/92 (68%)

Query:    28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
             +NETALHCAAQYGH+ VV+ LLE   DPTIRNS+ ET LDLAA YGRL  V  ++  HP 
Sbjct:    88 ENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMIISAHPN 147

Query:    88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
             L+   N R  +      PLHLA+RNGH+  +Q
Sbjct:   148 LMSC-NTRKHT------PLHLAARNGHKAVVQ 172

GO:0046875 "ephrin receptor binding" evidence=IEA

UNIPROTKB|F1MHL2 ANKS1A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 260 (96.6 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 56/107 (52%), Positives = 69/107 (64%)

Query:    28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
             DNETALHCAAQYGHT VV  LLE   DPT+RN++ ET LDLAA YGRLE V  L+  HP 
Sbjct:   152 DNETALHCAAQYGHTEVVKVLLEELTDPTMRNNKFETPLDLAALYGRLEVVKMLLNAHPN 211

Query:    88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRR 134
             L+   N +  +      PLHLA+RNGH+  +Q  + +   SS  T +
Sbjct:   212 LLSC-NTKKHT------PLHLAARNGHKAVVQVLLDAGMDSSYQTEK 251

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA

GO:0006929 "substrate-dependent cell migration" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1RZ13 ANKS1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 259 (96.2 bits), Expect = 6.4e-21, P = 6.4e-21
 Identities = 59/134 (44%), Positives = 76/134 (56%)

Query:     1 MSEYNNLKRKSRXXXXXXXXXXXXXXKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS 60
             ++E N L+ K                 DNETALHCAAQYGHT VV  LLE   DPT+RN+
Sbjct:   140 VNEQNALEIKELKKYGPFDTYLNAKNNDNETALHCAAQYGHTEVVKVLLEELTDPTMRNN 199

Query:    61 RHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQ 120
             + ET LDLAA YGRL+ V  L+  HP L+   N +  +      PLHLA+RNGHR  +Q 
Sbjct:   200 KFETPLDLAALYGRLDVVKMLLNAHPNLLSC-NTKKHT------PLHLAARNGHRAVVQV 252

Query:   121 KVQSDFCSSKVTRR 134
              + +   S+  T +
Sbjct:   253 LLDAGMDSNYQTEK 266

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA

GO:0006929 "substrate-dependent cell migration" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SQT7 F1SQT7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 51/88 (57%), Positives = 61/88 (69%)

Query:    28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
             +NETALHCAAQYGH+ VV+ LLE   DPTIRNS+ ET LDLAA YGRL  V  ++  HP 
Sbjct:   106 ENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMIISAHPN 165

Query:    88 LIQAYNARAQSTLFPASPLHLASRNGHR 115
             L+   N R  +      PLHLA+RNGH+
Sbjct:   166 LMSC-NTRKHT------PLHLAARNGHK 186

GO:0046875 "ephrin receptor binding" evidence=IEA

UNIPROTKB|Q92625 ANKS1A "Ankyrin repeat and SAM domain-containing protein 1A" [Homo sapiens (taxid:9606)]

 Score = 255 (94.8 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 53/92 (57%), Positives = 63/92 (68%)

Query:    28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
             DNETALHCAAQYGHT VV  LLE   DPT+RN++ ET LDLAA YGRLE V  L+  HP 
Sbjct:   148 DNETALHCAAQYGHTEVVKVLLEELTDPTMRNNKFETPLDLAALYGRLEVVKMLLNAHPN 207

Query:    88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
             L+   N +  +      PLHLA+RNGH+  +Q
Sbjct:   208 LLSC-NTKKHT------PLHLAARNGHKAVVQ 232

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0006929 "substrate-dependent cell migration" evidence=ISS

GO:0016322 "neuron remodeling" evidence=ISS

GO:0048013 "ephrin receptor signaling pathway" evidence=ISS

GO:0043005 "neuron projection" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1309183 Anks1a "ankyrin repeat and sterile alpha motif domain containing 1A" [Rattus norvegicus (taxid:10116)]

 Score = 253 (94.1 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 53/92 (57%), Positives = 63/92 (68%)

Query:    28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
             DNETALHCAAQYGHT VV  LLE   DPT+RN++ ET LDLAA YGRLE V  L+  HP 
Sbjct:   145 DNETALHCAAQYGHTEVVKALLEELTDPTMRNNKFETPLDLAALYGRLEVVKLLLSAHPN 204

Query:    88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
             L+   + R  +      PLHLA+RNGH+  +Q
Sbjct:   205 LLSC-STRKHT------PLHLAARNGHKAVVQ 229

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006929 "substrate-dependent cell migration" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA;ISO

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:1901187 "regulation of ephrin receptor signaling pathway" evidence=ISO

GO:2000059 "negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E1C898 ANKS1A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 252 (93.8 bits), Expect = 3.6e-20, P = 3.6e-20
 Identities = 52/88 (59%), Positives = 61/88 (69%)

Query:    28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
             DNETALHCAAQYGHT VV  LLE   DPT+RN++ ET LDLAA YGRLE V  L+  HP 
Sbjct:   176 DNETALHCAAQYGHTEVVKVLLEELTDPTMRNNKFETPLDLAALYGRLEVVKMLLNAHPN 235

Query:    88 LIQAYNARAQSTLFPASPLHLASRNGHR 115
             L+   N +  +      PLHLA+RNGH+
Sbjct:   236 LLSC-NTKKHT------PLHLAARNGHK 256

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006929 "substrate-dependent cell migration" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

UNIPROTKB|Q7Z6G8 ANKS1B "Ankyrin repeat and sterile alpha motif domain-containing protein 1B" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 52/92 (56%), Positives = 63/92 (68%)

Query:    28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
             +NETALHCAAQYGH+ VV+ LLE   DPTIRNS+ ET LDLAA YGRL  V  ++  HP 
Sbjct:   127 ENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMIISAHPN 186

Query:    88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
             L+   N R  +      PLHLA+RNGH+  +Q
Sbjct:   187 LMSC-NTRKHT------PLHLAARNGHKAVVQ 211

GO:0005886 "plasma membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IPI

MGI|MGI:1924781 Anks1b "ankyrin repeat and sterile alpha motif domain containing 1B" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 52/92 (56%), Positives = 63/92 (68%)

Query:    28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
             +NETALHCAAQYGH+ VV+ LLE   DPTIRNS+ ET LDLAA YGRL  V  ++  HP 
Sbjct:   127 ENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMIISAHPN 186

Query:    88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
             L+   N R  +      PLHLA+RNGH+  +Q
Sbjct:   187 LMSC-NTRKHT------PLHLAARNGHKAVVQ 211

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=ISO

RGD|1565556 Anks1b "ankyrin repeat and sterile alpha motif domain containing 1B" [Rattus norvegicus (taxid:10116)]

 Score = 248 (92.4 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 52/92 (56%), Positives = 63/92 (68%)

Query:    28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
             +NETALHCAAQYGH+ VV+ LLE   DPTIRNS+ ET LDLAA YGRL  V  ++  HP 
Sbjct:   127 ENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMIISAHPN 186

Query:    88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
             L+   N R  +      PLHLA+RNGH+  +Q
Sbjct:   187 LMSC-NTRKHT------PLHLAARNGHKAVVQ 211

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0015030 "Cajal body" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P59672	ANS1A_MOUSE	No assigned EC number	0.5652	0.625	0.0739	yes	N/A
Q92625	ANS1A_HUMAN	No assigned EC number	0.5652	0.625	0.0749	yes	N/A
A5PMU4	ANS1B_DANRE	No assigned EC number	0.5151	0.6764	0.0718	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	136
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	7e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-13
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-11
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-10
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	3e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	8e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	4e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-04
smart00248	30	smart00248, ANK, ankyrin repeats	0.001
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 73.2 bits (180), Expect = 1e-17
 Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           +D  T LH AA  GH  VV  LLE+  D   +++   T L LAA+ G LE V  L+    
Sbjct: 5   EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE-KG 63

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
             + A +          +PLHLA+RNG+
Sbjct: 64  ADVNARDKDGN------TPLHLAARNGN 85

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 68.6 bits (168), Expect = 7e-16
 Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
             D  T LH AA+ GH  +V  LLE   D   R+    T L LAA+ G L+ V  L++ H
Sbjct: 37  DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLK-H 95

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              + A +          +PLHLA++NGH
Sbjct: 96  GADVNARDK------DGRTPLHLAAKNGH 118

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 63.8 bits (156), Expect = 2e-14
 Identities = 25/59 (42%), Positives = 34/59 (57%)

Query: 24 MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
          +   D +TALH AA+ G+  +V  LLEH  D   ++    TAL LAA+ G LE V  L+
Sbjct: 23 VNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLL 81

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 25/57 (43%), Positives = 31/57 (54%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            KD  T LH AA+ G+  VV  LL+H  D   R+    T L LAA+ G LE V  L+
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 1e-11
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 11/83 (13%)

Query: 33  LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY 92
           LH AA+ G+  +V  LLE   D  + ++  +TAL LAA+ G LE V  L+         +
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLL--------EH 50

Query: 93  NARAQSTLFP-ASPLHLASRNGH 114
            A   +      + LHLA+RNG+
Sbjct: 51  GADVNAKDKDGNTALHLAARNGN 73

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 51.1 bits (123), Expect = 7e-10
 Identities = 21/52 (40%), Positives = 27/52 (51%)

Query: 31 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
          TALH AA  G   +V  LLE   D    +    TAL +AA+ G LE +  L+
Sbjct: 3  TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 29/81 (35%), Positives = 35/81 (43%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           +D  T LH AA  G   +V  LLE   DP  RNS   TALD AA+ GR+E V  L+    
Sbjct: 145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGL 204

Query: 87  GLIQAYNARAQSTLFPASPLH 107
            L               S  +
Sbjct: 205 HLSLLKFNLEGVANANVSKRN 225

Length = 235

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 47.0 bits (112), Expect = 3e-08
 Identities = 19/43 (44%), Positives = 25/43 (58%)

Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 69
           +  T LH AA+YG   +V  LL+   D  +R+S   TALDLA
Sbjct: 14 GNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 43.3 bits (103), Expect = 4e-07
 Identities = 15/32 (46%), Positives = 17/32 (53%)

Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
          D  T LH AA+ GH  VV  LLE   D   R+
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
           KD  TALH AA+ G+  +V  LLEH  D  +++
Sbjct: 58 DKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 43.3 bits (101), Expect = 8e-06
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 27  KDNETALHCAAQYGHTP-----VVSQLLEH---SCDPTIRNSRHETALDLAAQYGRLETV 78
            D +T LH AA  G+ P     V   LLE         +R+    T L  AA  G  + V
Sbjct: 104 ADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIV 163

Query: 79  DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
           + L+          +          + L  A++NG 
Sbjct: 164 ELLLEAGADPNSRNSYG-------VTALDPAAKNGR 192

Length = 235

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 41.4 bits (97), Expect = 4e-05
 Identities = 29/78 (37%), Positives = 35/78 (44%), Gaps = 1/78 (1%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           D  T LH A   GH  VV  LLE   DPT+ +   +T L+LA + G  E V  L R H  
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSR-HSQ 172

Query: 88  LIQAYNARAQSTLFPASP 105
                 A A+   F   P
Sbjct: 173 CHFELGANAKPDSFTGKP 190

Length = 664

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.8 bits (86), Expect = 1e-04
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTI 57
          D  T LH AA+ G+  +V  LLEH  D   
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.5 bits (80), Expect = 0.001
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTI 57
          D  T LH AA+ G+  VV  LL+   D   
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 36.0 bits (82), Expect = 0.002
 Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 9/90 (10%)

Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL-----ETVDTLVRTH 85
             LH AA  G   +V  LL    D   +++  +T L LAA  G       E    L+   
Sbjct: 75  LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLL--E 132

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGHR 115
            G     N          +PLH A+ NG  
Sbjct: 133 AGADLDVNNLRDEDG--NTPLHWAALNGDA 160

Length = 235

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 20  DELLMLTKDNE-------TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 66
           +ELL    D +       T LH AA  G+   V  LL+H+C+  IR++   TAL
Sbjct: 542 EELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTAL 595

Length = 823

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)

Query: 57  IRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
            R+    T L LAA  G LE V  L+  +   + A +   +      +PLHLA++NGH
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGR------TPLHLAAKNGH 52

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
KOG4412|consensus	226		99.96
KOG4412|consensus	226		99.96
PHA02743	166	Viral ankyrin protein; Provisional	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.94
KOG0509|consensus	600		99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02791	284	ankyrin-like protein; Provisional	99.93
KOG0509|consensus	600		99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.92
PHA02874	434	ankyrin repeat protein; Provisional	99.92
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0512|consensus	228		99.91
KOG0502|consensus	296		99.91
PHA02875	413	ankyrin repeat protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA02798	489	ankyrin-like protein; Provisional	99.91
PHA02946	446	ankyin-like protein; Provisional	99.91
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA03095	471	ankyrin-like protein; Provisional	99.91
PHA02874	434	ankyrin repeat protein; Provisional	99.91
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA02878	477	ankyrin repeat protein; Provisional	99.9
KOG0195|consensus	448		99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02798	489	ankyrin-like protein; Provisional	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
PHA02876	682	ankyrin repeat protein; Provisional	99.9
PHA02736	154	Viral ankyrin protein; Provisional	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
KOG0508|consensus	615		99.89
PHA03095	471	ankyrin-like protein; Provisional	99.89
PHA02989	494	ankyrin repeat protein; Provisional	99.89
PHA02743	166	Viral ankyrin protein; Provisional	99.88
PHA02989	494	ankyrin repeat protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG0510|consensus	929		99.87
KOG0508|consensus	615		99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.87
KOG4177|consensus	1143		99.87
PHA02876	682	ankyrin repeat protein; Provisional	99.87
PHA02795	437	ankyrin-like protein; Provisional	99.86
PHA02795	437	ankyrin-like protein; Provisional	99.86
PHA02946	446	ankyin-like protein; Provisional	99.86
KOG0510|consensus	929		99.85
KOG0514|consensus	452		99.85
PHA02917	661	ankyrin-like protein; Provisional	99.85
PHA02730	672	ankyrin-like protein; Provisional	99.85
KOG4177|consensus	1143		99.83
PHA02736	154	Viral ankyrin protein; Provisional	99.82
PHA02917	661	ankyrin-like protein; Provisional	99.82
KOG0512|consensus	228		99.81
KOG4214|consensus	117		99.81
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.8
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.8
PHA02730	672	ankyrin-like protein; Provisional	99.8
KOG0507|consensus	854		99.79
KOG0505|consensus	527		99.79
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.76
KOG4214|consensus	117		99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
KOG0505|consensus	527		99.76
PHA02792	631	ankyrin-like protein; Provisional	99.76
KOG0507|consensus	854		99.75
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.75
KOG0502|consensus	296		99.75
PHA02792	631	ankyrin-like protein; Provisional	99.74
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.72
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.71
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.7
KOG0514|consensus	452		99.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.69
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.69
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.69
KOG0195|consensus	448		99.68
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.67
KOG1710|consensus	396		99.67
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.66
KOG0515|consensus	752		99.64
KOG0515|consensus	752		99.62
KOG3676|consensus	782		99.59
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.58
KOG3676|consensus	782		99.46
KOG1710|consensus	396		99.44
KOG4369|consensus	2131		99.43
PF13606	30	Ank_3: Ankyrin repeat	99.41
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.4
KOG0818|consensus	669		99.32
KOG4369|consensus	2131		99.27
KOG0783|consensus	1267		99.26
KOG0506|consensus	622		99.25
PF13606	30	Ank_3: Ankyrin repeat	99.17
KOG0522|consensus	560		99.17
KOG0705|consensus	749		99.15
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.14
KOG0782|consensus	1004		99.08
KOG0522|consensus	560		99.04
KOG0506|consensus	622		99.03
KOG0783|consensus	1267		99.01
KOG0782|consensus	1004		99.0
KOG3609|consensus	822		98.98
KOG2384|consensus	223		98.9
KOG0818|consensus	669		98.87
KOG0705|consensus	749		98.81
KOG0521|consensus	785		98.79
KOG0511|consensus	516		98.71
KOG0520|consensus	975		98.6
KOG2384|consensus	223		98.55
KOG0520|consensus	975		98.46
KOG0511|consensus	516		98.39
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	98.21
KOG0521|consensus	785		98.21
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.79
KOG2505|consensus	591		97.71
KOG2505|consensus	591		97.61
KOG3609|consensus	822		97.02
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	96.21
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.24
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	93.84
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.7
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	92.58
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	87.6

>KOG4412|consensus

Probab=99.96  E-value=1.1e-29  Score=151.16  Aligned_cols=119  Identities=21%  Similarity=0.155  Sum_probs=72.9

Q ss_pred             HHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCh
Q psy2185          10 KSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL   88 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~   88 (136)
                      ++..++.+.+..+|-+|..||||||+||..|+.++|+.|+.. +++++..+..|.|+||||+..|+.+++++|++.|+.+
T Consensus        53 iv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i  132 (226)
T KOG4412|consen   53 IVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALI  132 (226)
T ss_pred             HHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCC
Confidence            333444455555666666666666666666666666666655 6666666666666666666666666666666666555


Q ss_pred             hHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          89 IQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        89 ~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                             ..+|..|.||||.|+..|..+++++|+..|+.+|..|+.|
T Consensus       133 -------~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G  172 (226)
T KOG4412|consen  133 -------RIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYG  172 (226)
T ss_pred             -------cccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccC
Confidence                   5556666666666666666666666666666666655554

>KOG4412|consensus

Probab=99.96  E-value=2.2e-29  Score=149.81  Aligned_cols=126  Identities=21%  Similarity=0.268  Sum_probs=118.3

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      ...+..+++..++...+.++|..+..|+|+||||+..|..+++++|+++|+.++++|..|.||||-|+..|..+++++|+
T Consensus        80 ~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li  159 (226)
T KOG4412|consen   80 ASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLI  159 (226)
T ss_pred             hhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHH
Confidence            33456777888887779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..++..       +.+|..|+||||.|...|+.++..+|+.+|++.+..|++|
T Consensus       160 ~~~a~~-------n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~  205 (226)
T KOG4412|consen  160 SQGAPL-------NTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG  205 (226)
T ss_pred             hcCCCC-------CcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC
Confidence            999887       8899999999999999999999999999999999999887

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.94  E-value=5.5e-26  Score=138.50  Aligned_cols=116  Identities=16%  Similarity=0.121  Sum_probs=104.7

Q ss_pred             HHhhhhhhhhhhhccCCchHHHHHHHcCCHHH---HHHHHhcCCCCCccc-CCCCCHHHHHHHcCCHHHHHHHHH-hCCC
Q psy2185          13 DMETETEDELLMLTKDNETALHCAAQYGHTPV---VSQLLEHSCDPTIRN-SRHETALDLAAQYGRLETVDTLVR-THPG   87 (136)
Q Consensus        13 ~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~---~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~   87 (136)
                      .++...+..++..|..|+||||+|+..|+.+.   +++|++.|++++.++ ..|.||||+|+..++.+++++|+. .+++
T Consensus        41 ~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad  120 (166)
T PHA02743         41 PFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVN  120 (166)
T ss_pred             HHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCC
Confidence            34557788899999999999999999988654   789999999999998 589999999999999999999996 7888


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +       ...+..|+||||+|+..++.+++++|+++|++++.++..|
T Consensus       121 ~-------~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  161 (166)
T PHA02743        121 L-------GAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG  161 (166)
T ss_pred             c-------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence            7       6788899999999999999999999999999999988766

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=7.2e-26  Score=147.74  Aligned_cols=114  Identities=13%  Similarity=0.087  Sum_probs=74.0

Q ss_pred             HHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCC-CHHHHHHHcCCHHHHHHHHHhCCChhHh
Q psy2185          13 DMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE-TALDLAAQYGRLETVDTLVRTHPGLIQA   91 (136)
Q Consensus        13 ~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~Ll~~~~~~~~~   91 (136)
                      .++...|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.+++++|++.++...  
T Consensus        78 ~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--  155 (284)
T PHA02791         78 KILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--  155 (284)
T ss_pred             HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--
Confidence            333456677777777777777777777777777777777777766665553 66777776667666666666543320  


Q ss_pred             hhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhcc
Q psy2185          92 YNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRR  134 (136)
Q Consensus        92 ~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~  134 (136)
                            ....|.||||+|++.|+.+++++|+++|++++.+|..
T Consensus       156 ------d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~  192 (284)
T PHA02791        156 ------DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSL  192 (284)
T ss_pred             ------ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCC
Confidence                  0013566666666666666666666666666666543

>KOG0509|consensus

Probab=99.93  E-value=7e-26  Score=155.69  Aligned_cols=120  Identities=20%  Similarity=0.202  Sum_probs=102.9

Q ss_pred             HHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCccc-CCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185           9 RKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus         9 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      +.++.++...+.+++..|++|.|+||+|+.+++.+++++|+++|+++|... .-+.||||+|+++|+..++.+|+++|++
T Consensus        58 ~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAd  137 (600)
T KOG0509|consen   58 ETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGAD  137 (600)
T ss_pred             HHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCC
Confidence            344455555588888888899999999999999999999999999998877 4578899999999999999999999999


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +       ...|..|.+|+|+|++.|+.-++-+|+.+|+|+|.+|.+|
T Consensus       138 p-------t~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~g  178 (600)
T KOG0509|consen  138 P-------TLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNG  178 (600)
T ss_pred             C-------ceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCC
Confidence            8       7888889999999999999999999999899999988887

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=3.6e-25  Score=151.97  Aligned_cols=105  Identities=21%  Similarity=0.266  Sum_probs=77.8

Q ss_pred             hhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCC
Q psy2185          24 MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA  103 (136)
Q Consensus        24 ~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  103 (136)
                      ..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.++++       ...+..|.
T Consensus        97 ~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~-------~~~d~~g~  169 (413)
T PHA02875         97 VFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL-------DIEDCCGC  169 (413)
T ss_pred             cccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCC-------CCCCCCCC
Confidence            34456777777777777777777777777777777777777777777777777777777777766       55666777


Q ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         104 SPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       104 t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ||||+|+..|+.+++++|+++|++++..+..|
T Consensus       170 TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~  201 (413)
T PHA02875        170 TPLIIAMAKGDIAICKMLLDSGANIDYFGKNG  201 (413)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCC
Confidence            77777777777777777777777777766554

>PHA02791 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.4e-24  Score=141.64  Aligned_cols=113  Identities=15%  Similarity=0.073  Sum_probs=88.1

Q ss_pred             HHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHh
Q psy2185          12 RDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQA   91 (136)
Q Consensus        12 ~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~   91 (136)
                      ..++.+.++  +..|..|.||||+|+..|+.+++++|++.|++++..+  ++||||+|+..|+.+++++|+..|+++   
T Consensus        15 ~~~Lis~~a--~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadv---   87 (284)
T PHA02791         15 KSFLSSKDA--FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDD---   87 (284)
T ss_pred             HHHHHhCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCC---
Confidence            344445554  4567788888888888888888888888888776653  578888888888888888888888776   


Q ss_pred             hhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          92 YNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        92 ~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                          ...+..|+||||+|+..|+.+++++|+++|++++.+++.|
T Consensus        88 ----n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g  127 (284)
T PHA02791         88 ----SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG  127 (284)
T ss_pred             ----CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCC
Confidence                5667788888888888888888888888888887776654

>KOG0509|consensus

Probab=99.92  E-value=5.2e-25  Score=151.46  Aligned_cols=123  Identities=25%  Similarity=0.333  Sum_probs=106.6

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhc-cCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLT-KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDT   80 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~-~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~   80 (136)
                      |+-+|..++.+.+ .++|+++|... .-+.||||+|++.|+..++.+|+++|++++.+|.+|.+|+|+|+..++...+-+
T Consensus        85 AAiNNrl~v~r~l-i~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vay  163 (600)
T KOG0509|consen   85 AAINNRLDVARYL-ISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAY  163 (600)
T ss_pred             HHHcCcHHHHHHH-HHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHH
Confidence            3455666666555 47788999988 578899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhh
Q psy2185          81 LVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVT  132 (136)
Q Consensus        81 Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~  132 (136)
                      |+..++++       ..+|.+|+||||+|+.+|+...++.|+..|+.+..+|
T Consensus       164 ll~~~~d~-------d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d  208 (600)
T KOG0509|consen  164 LLSKGADI-------DLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTD  208 (600)
T ss_pred             HHHhcccC-------CCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccc
Confidence            99999887       7788889999999999888777888888888888877

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.2e-24  Score=150.42  Aligned_cols=117  Identities=15%  Similarity=0.143  Sum_probs=104.8

Q ss_pred             HHHHHhhhhhhhhhhhccC-CchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCh
Q psy2185          10 KSRDMETETEDELLMLTKD-NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL   88 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~~~-g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~   88 (136)
                      .+..++.+.|++++..+.. |.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.|+++
T Consensus       148 ~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i  227 (477)
T PHA02878        148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAST  227 (477)
T ss_pred             HHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            3566777889999999988 999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hHhhhhhccCCCCCCCHHHHHHHc-CcHHHHHHHHhCCCCcchhhc
Q psy2185          89 IQAYNARAQSTLFPASPLHLASRN-GHRFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus        89 ~~~~~~~~~~~~~~~t~l~~A~~~-g~~~~~~~Ll~~g~~~~~~~~  133 (136)
                             ...+..|.||||+|+.. ++.+++++|+++|++++.++.
T Consensus       228 -------n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~  266 (477)
T PHA02878        228 -------DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSY  266 (477)
T ss_pred             -------CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCC
Confidence                   67788899999999875 688999999999999887764

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3.9e-24  Score=134.76  Aligned_cols=119  Identities=10%  Similarity=0.074  Sum_probs=96.7

Q ss_pred             HHHHHhhhhhhhhhhhc-cCCchHHHHHHHc---CCHHHHHHHHhcCCCCCcccCCCCCHHHHHHH--cCCHHHHHHHHH
Q psy2185          10 KSRDMETETEDELLMLT-KDNETALHCAAQY---GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ--YGRLETVDTLVR   83 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~-~~g~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~   83 (136)
                      .+.+++.+.|++++.++ ..|.||||+|+..   ++.+++++|+++|++++.++..|.||||+|+.  .++.+++++|++
T Consensus        67 eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~  146 (209)
T PHA02859         67 EILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLID  146 (209)
T ss_pred             HHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHH
Confidence            34456667888888886 4788999987754   46888888888899988888888999988865  367888999988


Q ss_pred             hCCChhHhhhhhccCCCCCCCHHHH-HHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          84 THPGLIQAYNARAQSTLFPASPLHL-ASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~t~l~~-A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .|+++       ..++..|.||||. |+..++.+++++|+++|++++.+|..|
T Consensus       147 ~gadi-------n~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g  192 (209)
T PHA02859        147 SGVSF-------LNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSG  192 (209)
T ss_pred             cCCCc-------ccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            88887       6678888999995 566788899999999999999888876

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.92  E-value=4.7e-24  Score=117.61  Aligned_cols=89  Identities=28%  Similarity=0.331  Sum_probs=81.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHc
Q psy2185          33 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN  112 (136)
Q Consensus        33 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~  112 (136)
                      ||+||..|+.+++++|++.+.+++.    |.||+|+|+..|+.+++++|++.++++       ..++..|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADI-------NSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-------T-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc-------cccCCCCCCHHHHHHHc
Confidence            7999999999999999999887766    889999999999999999999999998       67788999999999999


Q ss_pred             CcHHHHHHHHhCCCCcchhh
Q psy2185         113 GHRFYLQQKVQSDFCSSKVT  132 (136)
Q Consensus       113 g~~~~~~~Ll~~g~~~~~~~  132 (136)
                      |+.+++++|+++|++++.+|
T Consensus        70 ~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   70 GNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             THHHHHHHHHHTTT-TTSS-
T ss_pred             CCHHHHHHHHHcCCCCCCcC
Confidence            99999999999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3.8e-24  Score=147.75  Aligned_cols=117  Identities=15%  Similarity=0.116  Sum_probs=107.8

Q ss_pred             HHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHh
Q psy2185          12 RDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQA   91 (136)
Q Consensus        12 ~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~   91 (136)
                      ...+.+.|++++.++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++.|+++   
T Consensus       107 i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~---  183 (434)
T PHA02874        107 IKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYA---  183 (434)
T ss_pred             HHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC---
Confidence            34455678889999999999999999999999999999999999999999999999999999999999999999887   


Q ss_pred             hhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          92 YNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        92 ~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                          ...+..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus       184 ----n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g  223 (434)
T PHA02874        184 ----NVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNG  223 (434)
T ss_pred             ----CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCC
Confidence                6778899999999999999999999999999998887765

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=3.5e-24  Score=157.15  Aligned_cols=127  Identities=18%  Similarity=0.076  Sum_probs=103.9

Q ss_pred             HHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185           8 KRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus         8 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      ...++. +.+.|.++|..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+..+..
T Consensus       538 ~~~l~~-Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~  616 (823)
T PLN03192        538 AALLEE-LLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASI  616 (823)
T ss_pred             HHHHHH-HHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcc
Confidence            344444 4578999999999999999999999999999999999999999999999999988877777776666543321


Q ss_pred             hh------------------------HhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          88 LI------------------------QAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        88 ~~------------------------~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..                        +...+.+.++..|+||||+|+..|+.+++++|+++|++++..|..|
T Consensus       617 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g  688 (823)
T PLN03192        617 SDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDD  688 (823)
T ss_pred             cCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCC
Confidence            10                        0000126678899999999999999999999999999999988766

>KOG0512|consensus

Probab=99.91  E-value=4.8e-24  Score=126.47  Aligned_cols=126  Identities=21%  Similarity=0.222  Sum_probs=111.0

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +-++....++.+|.+..--+|.+|..|+||||.|++.||.++++.|+..|+++..+...||||||.||...+.+++..|+
T Consensus        71 ae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LL  150 (228)
T KOG0512|consen   71 AEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLL  150 (228)
T ss_pred             HhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHH
Confidence            44566677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCc-HHHHHHHHh-CCCCcchhhccC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGH-RFYLQQKVQ-SDFCSSKVTRRF  135 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~-~~~~~~Ll~-~g~~~~~~~~~g  135 (136)
                      .+|+++       +......+||||+|+...+ ...+++|+. +++++-.++..+
T Consensus       151 qhgaDV-------nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~e  198 (228)
T KOG0512|consen  151 QHGADV-------NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLE  198 (228)
T ss_pred             hccCcc-------cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCcc
Confidence            999999       6677778999999999876 446777775 788877666543

>KOG0502|consensus

Probab=99.91  E-value=1.6e-24  Score=132.98  Aligned_cols=110  Identities=25%  Similarity=0.245  Sum_probs=105.1

Q ss_pred             hhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccC
Q psy2185          19 EDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS   98 (136)
Q Consensus        19 ~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   98 (136)
                      ...+|..|+.|.|||.||+.+|+++++++|++.|++++...+...++|.+|+..|..+++++|++++.++       +..
T Consensus       150 ~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdV-------Nvy  222 (296)
T KOG0502|consen  150 NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDV-------NVY  222 (296)
T ss_pred             hccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCc-------cee
Confidence            4568899999999999999999999999999999999998888899999999999999999999999998       889


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          99 TLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        99 ~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |.+|.|||-+|++-+|.+|++.|+..|++++..+..|
T Consensus       223 DwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsG  259 (296)
T KOG0502|consen  223 DWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSG  259 (296)
T ss_pred             ccCCCceeeeeecCChHHHHHHHHhcCCCcccccccC
Confidence            9999999999999999999999999999999988877

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=144.29  Aligned_cols=124  Identities=14%  Similarity=0.077  Sum_probs=78.7

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.++ +.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..+.||||.|+..|+.+++++|+
T Consensus        10 ~~~g~~~iv~~Ll-~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll   88 (413)
T PHA02875         10 ILFGELDIARRLL-DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL   88 (413)
T ss_pred             HHhCCHHHHHHHH-HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence            3444445554444 678888888888999999999999999999999998888776666666666666666666666666


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhc
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~  133 (136)
                      +.+....      ...+..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus        89 ~~~~~~~------~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~  133 (413)
T PHA02875         89 DLGKFAD------DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNT  133 (413)
T ss_pred             HcCCccc------ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCC
Confidence            6554431      11222344555555554444555555555544444443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.9e-23  Score=130.24  Aligned_cols=122  Identities=11%  Similarity=0.038  Sum_probs=103.2

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcC--CHHHHHHHHhcCCCCCccc-CCCCCHHHHHHHc---CCHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYG--HTPVVSQLLEHSCDPTIRN-SRHETALDLAAQY---GRLE   76 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g--~~~~~~~ll~~~~~~~~~~-~~g~t~l~~a~~~---~~~~   76 (136)
                      +..+..+.++.++.    .++..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|.||||+|+..   ++.+
T Consensus        29 ~~~~~~~~vk~Li~----~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~e  104 (209)
T PHA02859         29 VEKDDIEGVKKWIK----FVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPE  104 (209)
T ss_pred             HHhCcHHHHHHHHH----hhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHH
Confidence            34455555655553    25678889999999999854  8999999999999999987 5899999998764   4799


Q ss_pred             HHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHH--cCcHHHHHHHHhCCCCcchhhccC
Q psy2185          77 TVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR--NGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        77 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~--~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++++|++.|+++       +..+..|.||||+|+.  .++.+++++|+++|++++.+|..|
T Consensus       105 iv~~Ll~~gadi-------n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g  158 (209)
T PHA02859        105 ILKILIDSGSSI-------TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDN  158 (209)
T ss_pred             HHHHHHHCCCCC-------CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCC
Confidence            999999999998       7788999999999986  468999999999999999998776

>PHA02798 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.6e-23  Score=146.47  Aligned_cols=126  Identities=17%  Similarity=0.159  Sum_probs=105.9

Q ss_pred             HHHHHhhhhhhhhhhhccCCchHHHHHHHcC---CHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCC---HHHHHHHHH
Q psy2185          10 KSRDMETETEDELLMLTKDNETALHCAAQYG---HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR---LETVDTLVR   83 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~Ll~   83 (136)
                      .+.+++.+.|+++|.+|..|.||||+|+..+   +.+++++|+++|++++.++..|.||||+|+..++   .+++++|++
T Consensus        90 ~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~  169 (489)
T PHA02798         90 DIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLE  169 (489)
T ss_pred             HHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHH
Confidence            4456666889999999999999999999875   6899999999999999999999999999999887   899999998


Q ss_pred             hCCChhHhhh----------------------------------------------------------------------
Q psy2185          84 THPGLIQAYN----------------------------------------------------------------------   93 (136)
Q Consensus        84 ~~~~~~~~~~----------------------------------------------------------------------   93 (136)
                      .|+++.....                                                                      
T Consensus       170 ~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~  249 (489)
T PHA02798        170 KGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYI  249 (489)
T ss_pred             hCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcC
Confidence            8776421100                                                                      


Q ss_pred             hhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          94 ARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        94 ~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.+.++..|+||||+|+..|+.+++++|+++|+|++.+|..|
T Consensus       250 dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G  291 (489)
T PHA02798        250 DINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELG  291 (489)
T ss_pred             CCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCC
Confidence            012356679999999999999999999999999999999877

>PHA02946 ankyin-like protein; Provisional

Probab=99.91  E-value=2.1e-23  Score=144.09  Aligned_cols=126  Identities=16%  Similarity=0.162  Sum_probs=97.8

Q ss_pred             HHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCC--HHHHHHHHHhCCC
Q psy2185          10 KSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR--LETVDTLVRTHPG   87 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~Ll~~~~~   87 (136)
                      .+.+.+.+.|++++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..+.  .+++++|++.|++
T Consensus        53 ~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gad  132 (446)
T PHA02946         53 RFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAK  132 (446)
T ss_pred             HHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence            34566668899999999999999999999999999999999999999999999999999987654  7889999999987


Q ss_pred             hhHhhh--------------------------hhccCCCCCCCHHHHHHHcCc--HHHHHHHHhCCCCcchhhccC
Q psy2185          88 LIQAYN--------------------------ARAQSTLFPASPLHLASRNGH--RFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        88 ~~~~~~--------------------------~~~~~~~~~~t~l~~A~~~g~--~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.....                          +....+..|+||||+|+..++  .+++++|+++|++++.+|..|
T Consensus       133 in~~~d~~g~tpL~aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G  208 (446)
T PHA02946        133 INNSVDEEGCGPLLACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDG  208 (446)
T ss_pred             cccccCCCCCcHHHHHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCC
Confidence            632100                          112345566677776665433  466777777777777766655

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.2e-23  Score=145.50  Aligned_cols=121  Identities=15%  Similarity=0.197  Sum_probs=84.4

Q ss_pred             hhhhhhhhhhhccCCchHHHHHHHcC--CHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhh
Q psy2185          15 ETETEDELLMLTKDNETALHCAAQYG--HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY   92 (136)
Q Consensus        15 l~~~~~~~~~~~~~g~t~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~   92 (136)
                      +.+.|++++..+..|.||||+|+..+  +.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|+++....
T Consensus       127 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~  206 (480)
T PHA03100        127 LLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGD  206 (480)
T ss_pred             HHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCC
Confidence            33556666666666666666666666  6666666666666666666666666666666666666666666655432110


Q ss_pred             ----------------------------------hhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          93 ----------------------------------NARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        93 ----------------------------------~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                                                        .+.+.++..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       207 ~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g  283 (480)
T PHA03100        207 IETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYG  283 (480)
T ss_pred             CCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence                                              0114567789999999999999999999999999999998876

>PHA03095 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.3e-23  Score=145.08  Aligned_cols=116  Identities=16%  Similarity=0.114  Sum_probs=100.5

Q ss_pred             HHhhhhhhhhhhhccCCchHHHHHHHcC---CHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcC-CHHHHHHHHHhCCCh
Q psy2185          13 DMETETEDELLMLTKDNETALHCAAQYG---HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG-RLETVDTLVRTHPGL   88 (136)
Q Consensus        13 ~ll~~~~~~~~~~~~~g~t~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~Ll~~~~~~   88 (136)
                      ..+.+.|++++..+..|.||||+|+..+   +.+++++|++.|++++.++..|.||||+|+..+ ..+++++|++.|+++
T Consensus        31 ~~Ll~~ga~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~i  110 (471)
T PHA03095         31 RRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADV  110 (471)
T ss_pred             HHHHHcCCCcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCC
Confidence            3445678899999989999999999988   889999999999999999889999999999998 589999999999887


Q ss_pred             hHhhhhhccCCCCCCCHHHHHH--HcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          89 IQAYNARAQSTLFPASPLHLAS--RNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        89 ~~~~~~~~~~~~~~~t~l~~A~--~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                             ...+..|.||||+|+  ..++.+++++|+++|++++.+|..|
T Consensus       111 -------n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g  152 (471)
T PHA03095        111 -------NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYG  152 (471)
T ss_pred             -------CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCC
Confidence                   677888999999998  4567889999999999998887765

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.4e-23  Score=143.84  Aligned_cols=134  Identities=13%  Similarity=0.050  Sum_probs=101.5

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |++.+-.+.++.++...+..++..+..|.||||.|+..|+.+++++|++.|++++..+..|.||||.|+..|+.+++++|
T Consensus         8 ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~L   87 (434)
T PHA02874          8 CIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLL   87 (434)
T ss_pred             HHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            45556667777777777777777888888999999999999999988888888888888888888888888888888888


Q ss_pred             HHhCCChhHh----------------hhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          82 VRTHPGLIQA----------------YNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        82 l~~~~~~~~~----------------~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++.|++....                ..+....+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        88 l~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g  157 (434)
T PHA02874         88 IDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG  157 (434)
T ss_pred             HHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCC
Confidence            8877653110                00123455667788888888888888888888888777777655

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.3e-23  Score=145.44  Aligned_cols=125  Identities=17%  Similarity=0.187  Sum_probs=106.5

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHH--HcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcC--CHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAA--QYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG--RLETV   78 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~--~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~   78 (136)
                      +..+..+.+ .++.+.|++++..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..+  +.+++
T Consensus        81 ~~~~~~~iv-~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv  159 (480)
T PHA03100         81 NLTDVKEIV-KLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKIL  159 (480)
T ss_pred             HhhchHHHH-HHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHH
Confidence            344445555 4455778888888889999999999  899999999999999999988899999999999999  89999


Q ss_pred             HHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          79 DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        79 ~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++|++.|+++       ...+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus       160 ~~Ll~~g~di-------n~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~  209 (480)
T PHA03100        160 KLLIDKGVDI-------NAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIET  209 (480)
T ss_pred             HHHHHCCCCc-------ccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCC
Confidence            9999999887       5667789999999999999999999999999998876654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.90  E-value=3.1e-23  Score=144.74  Aligned_cols=120  Identities=16%  Similarity=0.193  Sum_probs=106.3

Q ss_pred             HHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHc-CCHHHHHHHHHh
Q psy2185           6 NLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY-GRLETVDTLVRT   84 (136)
Q Consensus         6 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~   84 (136)
                      +..+.+ +++.+.|++++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+.. ++.+++++|++.
T Consensus       179 ~~~~iv-~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~  257 (477)
T PHA02878        179 KDQRLT-ELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEH  257 (477)
T ss_pred             CCHHHH-HHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHc
Confidence            334444 455678999999999999999999999999999999999999999999999999999975 789999999999


Q ss_pred             CCChhHhhhhhccCCC-CCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          85 HPGLIQAYNARAQSTL-FPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        85 ~~~~~~~~~~~~~~~~-~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |+++       +..+. .|.||||+|  .++.+++++|+++|+|++.+|..|
T Consensus       258 gadv-------n~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g  300 (477)
T PHA02878        258 GVDV-------NAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYK  300 (477)
T ss_pred             CCCC-------CccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCC
Confidence            9998       44443 799999999  567899999999999999999887

>KOG0195|consensus

Probab=99.90  E-value=5.5e-24  Score=135.58  Aligned_cols=114  Identities=23%  Similarity=0.267  Sum_probs=107.5

Q ss_pred             hhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhh
Q psy2185          15 ETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNA   94 (136)
Q Consensus        15 l~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~   94 (136)
                      +.....++|.-|..|.+|||+||..||..+++.|+..|+.++..+....||||+|+.+|+.++++.|+...+++      
T Consensus        20 ld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadv------   93 (448)
T KOG0195|consen   20 LDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADV------   93 (448)
T ss_pred             ecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhccc------
Confidence            34556778888999999999999999999999999999999999999999999999999999999999999998      


Q ss_pred             hccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          95 RAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        95 ~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                       +..+..|.||||+||.-|+..+.+-|+..|+.+++-|++|
T Consensus        94 -navnehgntplhyacfwgydqiaedli~~ga~v~icnk~g  133 (448)
T KOG0195|consen   94 -NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKG  133 (448)
T ss_pred             -chhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCC
Confidence             7788899999999999999999999999999999999987

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=3.7e-23  Score=148.47  Aligned_cols=118  Identities=10%  Similarity=-0.027  Sum_probs=98.2

Q ss_pred             HHHHhhhhhhhhhhhccCCchHHHHHHHcCC--HHHHHHHHhcCCCCCcccCCCCCHHHHHH------------------
Q psy2185          11 SRDMETETEDELLMLTKDNETALHCAAQYGH--TPVVSQLLEHSCDPTIRNSRHETALDLAA------------------   70 (136)
Q Consensus        11 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~--~~~~~~ll~~~~~~~~~~~~g~t~l~~a~------------------   70 (136)
                      +.+++.+.|++++.+|..|.||||+|+..|+  .+++++|+++|++++.++..|+||||+|+                  
T Consensus       194 IVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~  273 (764)
T PHA02716        194 ILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESL  273 (764)
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhc
Confidence            4456667889999999999999999999885  48899999999999999999999998653                  


Q ss_pred             -------------------HcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHH--cCcHHHHHHHHhCCCCcc
Q psy2185          71 -------------------QYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR--NGHRFYLQQKVQSDFCSS  129 (136)
Q Consensus        71 -------------------~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~--~g~~~~~~~Ll~~g~~~~  129 (136)
                                         ..|+.+++++|++.|+++       ..++..|+||||+|+.  .++.+++++|+++|++++
T Consensus       274 d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-------N~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN  346 (764)
T PHA02716        274 DGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-------HYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLN  346 (764)
T ss_pred             cccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-------eccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCc
Confidence                               345667777777777776       6678899999999764  467899999999999999


Q ss_pred             hhhccC
Q psy2185         130 KVTRRF  135 (136)
Q Consensus       130 ~~~~~g  135 (136)
                      .+|..|
T Consensus       347 ~kD~~G  352 (764)
T PHA02716        347 EPDNIG  352 (764)
T ss_pred             cCCCCC
Confidence            999876

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=9e-23  Score=124.79  Aligned_cols=101  Identities=21%  Similarity=0.169  Sum_probs=63.8

Q ss_pred             hhhhhhhccCCchHHHHHHHcCC----HHHHHHHHhcCCCCCcccC-CCCCHHHHHHHcCCHHHHHHHHH-hCCChhHhh
Q psy2185          19 EDELLMLTKDNETALHCAAQYGH----TPVVSQLLEHSCDPTIRNS-RHETALDLAAQYGRLETVDTLVR-THPGLIQAY   92 (136)
Q Consensus        19 ~~~~~~~~~~g~t~l~~a~~~g~----~~~~~~ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~   92 (136)
                      +.+++.+|..|.||||+|+..|+    .+++++|+++|++++.++. .|.||||+|+..++.+++++|+. .++++    
T Consensus        50 ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~----  125 (169)
T PHA02741         50 AAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL----  125 (169)
T ss_pred             hhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC----
Confidence            45566666666666666666666    3566666666666666653 56666666666666666666665 35554    


Q ss_pred             hhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCC
Q psy2185          93 NARAQSTLFPASPLHLASRNGHRFYLQQKVQSDF  126 (136)
Q Consensus        93 ~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~  126 (136)
                         ...+..|+||||+|...++.+++++|++.++
T Consensus       126 ---~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~  156 (169)
T PHA02741        126 ---HFCNADNKSPFELAIDNEDVAMMQILREIVA  156 (169)
T ss_pred             ---CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHH
Confidence               4455566666666666666666666666543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.90  E-value=6.9e-23  Score=143.34  Aligned_cols=117  Identities=15%  Similarity=0.071  Sum_probs=106.2

Q ss_pred             HHHHHhhhhhhhhhhhccCCchHHHHHHHc-----CCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcC---CHHHHHHH
Q psy2185          10 KSRDMETETEDELLMLTKDNETALHCAAQY-----GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG---RLETVDTL   81 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~-----g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~L   81 (136)
                      .+.+++.+.|++++..+..|.||||.++..     ++.+++++|+++|++++.++..|.||||+|+..+   +.+++++|
T Consensus        52 ~iv~~Ll~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~L  131 (489)
T PHA02798         52 DIVKLFINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFM  131 (489)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHH
Confidence            455666789999999999999999998764     6789999999999999999999999999999875   78999999


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCc---HHHHHHHHhCCCCcchhhc
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGH---RFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~---~~~~~~Ll~~g~~~~~~~~  133 (136)
                      ++.|+++       ...+..|.||||+|++.++   .+++++|+++|++++.++.
T Consensus       132 l~~Gadv-------n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~  179 (489)
T PHA02798        132 IENGADT-------TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNN  179 (489)
T ss_pred             HHcCCCc-------cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccC
Confidence            9999998       7788999999999999998   9999999999999988754

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=1.2e-22  Score=124.27  Aligned_cols=107  Identities=14%  Similarity=0.169  Sum_probs=94.9

Q ss_pred             hhhhccCCchHHHHHHHcCCHHHHHHHHh------cCCCCCcccCCCCCHHHHHHHcCC----HHHHHHHHHhCCChhHh
Q psy2185          22 LLMLTKDNETALHCAAQYGHTPVVSQLLE------HSCDPTIRNSRHETALDLAAQYGR----LETVDTLVRTHPGLIQA   91 (136)
Q Consensus        22 ~~~~~~~g~t~l~~a~~~g~~~~~~~ll~------~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~Ll~~~~~~~~~   91 (136)
                      ++.++..|.||||+|+..|+.++++.|+.      .+++++.+|..|.||||+|+..++    .+++++|+..++++   
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi---   90 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI---   90 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC---
Confidence            45678899999999999999999998753      357888999999999999999998    58899999999987   


Q ss_pred             hhhhccCCC-CCCCHHHHHHHcCcHHHHHHHHh-CCCCcchhhccC
Q psy2185          92 YNARAQSTL-FPASPLHLASRNGHRFYLQQKVQ-SDFCSSKVTRRF  135 (136)
Q Consensus        92 ~~~~~~~~~-~~~t~l~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g  135 (136)
                          +.++. .|+||||+|+..++.+++++|+. .|++++.+|..|
T Consensus        91 ----n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g  132 (169)
T PHA02741         91 ----NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADN  132 (169)
T ss_pred             ----CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCC
Confidence                56664 89999999999999999999997 699999988776

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.90  E-value=7.2e-23  Score=148.07  Aligned_cols=117  Identities=16%  Similarity=0.124  Sum_probs=86.7

Q ss_pred             HHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCC-HHHHHHHHHhCCChhH
Q psy2185          12 RDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR-LETVDTLVRTHPGLIQ   90 (136)
Q Consensus        12 ~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~Ll~~~~~~~~   90 (136)
                      ..++.+.|++++.+|..|.||||+|+..++.+++++|+++|++++..+..|.||||+|+..+. ..++++|++.|+++  
T Consensus       358 v~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadi--  435 (682)
T PHA02876        358 VITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANV--  435 (682)
T ss_pred             HHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCC--
Confidence            344456666666666667777777777777777777777676666666666677776665444 34566666666666  


Q ss_pred             hhhhhccCCCCCCCHHHHHHHcC-cHHHHHHHHhCCCCcchhhccC
Q psy2185          91 AYNARAQSTLFPASPLHLASRNG-HRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        91 ~~~~~~~~~~~~~t~l~~A~~~g-~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                           +.++..|+||||+|+..| +.+++++|+++|++++.+|..|
T Consensus       436 -----n~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g  476 (682)
T PHA02876        436 -----NSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQN  476 (682)
T ss_pred             -----CcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCC
Confidence                 678889999999999976 6899999999999999999877

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.90  E-value=6.1e-23  Score=123.84  Aligned_cols=103  Identities=12%  Similarity=0.063  Sum_probs=92.3

Q ss_pred             hhhhhccCCchHHHHHHHcCCH---HHHHHHHhcCCCCCccc-CCCCCHHHHHHHcCCHHHHHHHHHh-CCChhHhhhhh
Q psy2185          21 ELLMLTKDNETALHCAAQYGHT---PVVSQLLEHSCDPTIRN-SRHETALDLAAQYGRLETVDTLVRT-HPGLIQAYNAR   95 (136)
Q Consensus        21 ~~~~~~~~g~t~l~~a~~~g~~---~~~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~   95 (136)
                      .++..|..|.||||+|+..|+.   +++++|++.|++++.++ ..|.||||+|+..++.+++++|+.. ++++       
T Consensus        47 ~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-------  119 (154)
T PHA02736         47 LVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNM-------  119 (154)
T ss_pred             HHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC-------
Confidence            3456788999999999999987   46889999999999998 5899999999999999999999984 7777       


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcch
Q psy2185          96 AQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSK  130 (136)
Q Consensus        96 ~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~  130 (136)
                      +..+..|.||||+|+..|+.+++++|+++|++.++
T Consensus       120 n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736        120 EILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            67888999999999999999999999999998763

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=6.3e-23  Score=147.33  Aligned_cols=119  Identities=13%  Similarity=-0.017  Sum_probs=105.3

Q ss_pred             HHHHHhhhhhhhhhhhccCCchHHHHH-------------------------------------HHcCCHHHHHHHHhcC
Q psy2185          10 KSRDMETETEDELLMLTKDNETALHCA-------------------------------------AQYGHTPVVSQLLEHS   52 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~~~g~t~l~~a-------------------------------------~~~g~~~~~~~ll~~~   52 (136)
                      .+.++|.+.|++++.++..|+||||+|                                     +..|+.+++++|++.|
T Consensus       228 eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~G  307 (764)
T PHA02716        228 SVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPG  307 (764)
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCC
Confidence            455666789999999999999999975                                     4457889999999999


Q ss_pred             CCCCcccCCCCCHHHHHHH--cCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHH--------------cCcHH
Q psy2185          53 CDPTIRNSRHETALDLAAQ--YGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR--------------NGHRF  116 (136)
Q Consensus        53 ~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~--------------~g~~~  116 (136)
                      ++++.++..|+||||+|+.  .++.+++++|++.|+++       ..++..|+||||+|+.              .++.+
T Consensus       308 AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI-------N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~e  380 (764)
T PHA02716        308 VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL-------NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLD  380 (764)
T ss_pred             CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC-------ccCCCCCCCHHHHHHHhhhhhccccccccccChHH
Confidence            9999999999999999764  46889999999999998       7788999999999875              36899


Q ss_pred             HHHHHHhCCCCcchhhccC
Q psy2185         117 YLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       117 ~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++++|+++|++++.+|..|
T Consensus       381 VVklLL~~GADIn~kn~~G  399 (764)
T PHA02716        381 VIQCLISLGADITAVNCLG  399 (764)
T ss_pred             HHHHHHHCCCCCCCcCCCC
Confidence            9999999999999999877

>KOG0508|consensus

Probab=99.89  E-value=3.8e-23  Score=138.71  Aligned_cols=113  Identities=21%  Similarity=0.238  Sum_probs=94.2

Q ss_pred             HHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhH
Q psy2185          11 SRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ   90 (136)
Q Consensus        11 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~   90 (136)
                      +.+++...++++|..+....|||--||.-|+++++++|+++|+++.+.|..|.|.||+||..|+.+++++|++.|+++  
T Consensus        99 vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADv--  176 (615)
T KOG0508|consen   99 VVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADV--  176 (615)
T ss_pred             HHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCc--
Confidence            345555667888888888888888888888888888888888888888888888888888888888888888888888  


Q ss_pred             hhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcch
Q psy2185          91 AYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSK  130 (136)
Q Consensus        91 ~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~  130 (136)
                           +.++..|+|+||.|++.|+.+++++|+.+|+-++.
T Consensus       177 -----n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~  211 (615)
T KOG0508|consen  177 -----NAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV  211 (615)
T ss_pred             -----chhcccCchHHHhhhhcccHHHHHHHHhCCceeee
Confidence                 67777888888888888888888888888876643

>PHA03095 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.3e-22  Score=141.25  Aligned_cols=114  Identities=18%  Similarity=0.125  Sum_probs=81.4

Q ss_pred             HHHHhhhhhhhhhhhccCCchHHHHHHHcCCH--HHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCh
Q psy2185          11 SRDMETETEDELLMLTKDNETALHCAAQYGHT--PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL   88 (136)
Q Consensus        11 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~--~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~   88 (136)
                      +...+.+.|++++.+|..|.||||+|+..|+.  .+++.+++.|++++.++..|+||||+|+..|+.+++++|++.|+++
T Consensus       204 i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~  283 (471)
T PHA03095        204 IVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADI  283 (471)
T ss_pred             HHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            33445566777777777777777777777664  4566677777777777777777777777777777777777777776


Q ss_pred             hHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchh
Q psy2185          89 IQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKV  131 (136)
Q Consensus        89 ~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~  131 (136)
                             +..+..|.||||+|+..|+.++++.|++++++++..
T Consensus       284 -------n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~~~  319 (471)
T PHA03095        284 -------NAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAETV  319 (471)
T ss_pred             -------cccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHHHH
Confidence                   566677777777777777777777777777776543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3.2e-22  Score=140.16  Aligned_cols=124  Identities=11%  Similarity=0.093  Sum_probs=82.6

Q ss_pred             HHHhhhhhhhhhhhccCCchHHHHHHHc---CCHHHHHHHHhcCCCC-CcccCCCCCHHHHHHHc--CCHHHHHHHHHhC
Q psy2185          12 RDMETETEDELLMLTKDNETALHCAAQY---GHTPVVSQLLEHSCDP-TIRNSRHETALDLAAQY--GRLETVDTLVRTH   85 (136)
Q Consensus        12 ~~ll~~~~~~~~~~~~~g~t~l~~a~~~---g~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~--~~~~~~~~Ll~~~   85 (136)
                      ..++.+.|++++.++..|.||||.|+..   ++.+++++|+++|+++ +.++..|.||||+|+..  ++.+++++|++.|
T Consensus        91 v~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~G  170 (494)
T PHA02989         91 VKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFG  170 (494)
T ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcC
Confidence            3444556666666666666666655443   4566666666666666 56666666666665442  4555666666555


Q ss_pred             CChhH--------------------------------------hhh-------------------------------hhc
Q psy2185          86 PGLIQ--------------------------------------AYN-------------------------------ARA   96 (136)
Q Consensus        86 ~~~~~--------------------------------------~~~-------------------------------~~~   96 (136)
                      +++..                                      ...                               +.+
T Consensus       171 adi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn  250 (494)
T PHA02989        171 VNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKIN  250 (494)
T ss_pred             CCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCC
Confidence            54322                                      000                               012


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          97 QSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        97 ~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .++..|+||||+|+..|+.+++++|+++|+|++.+|..|
T Consensus       251 ~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G  289 (494)
T PHA02989        251 KKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDG  289 (494)
T ss_pred             CCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCC
Confidence            356679999999999999999999999999999999877

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.88  E-value=6.9e-22  Score=120.51  Aligned_cols=112  Identities=10%  Similarity=0.080  Sum_probs=97.3

Q ss_pred             hhhhhhhhhccCCchHHHHHHHcCCH----HHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHH---HHHHHHhCCChh
Q psy2185          17 ETEDELLMLTKDNETALHCAAQYGHT----PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLET---VDTLVRTHPGLI   89 (136)
Q Consensus        17 ~~~~~~~~~~~~g~t~l~~a~~~g~~----~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~---~~~Ll~~~~~~~   89 (136)
                      ..+++++..+..+.+++|.||..|+.    ++++++.+.++.++.++..|+||||+|+..|+.+.   +++|++.|+++ 
T Consensus         8 ~~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadi-   86 (166)
T PHA02743          8 GNNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADI-   86 (166)
T ss_pred             ccchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCC-
Confidence            35677777888889999999999998    56667778898888889999999999999988654   78999999988 


Q ss_pred             HhhhhhccCC-CCCCCHHHHHHHcCcHHHHHHHHh-CCCCcchhhccC
Q psy2185          90 QAYNARAQST-LFPASPLHLASRNGHRFYLQQKVQ-SDFCSSKVTRRF  135 (136)
Q Consensus        90 ~~~~~~~~~~-~~~~t~l~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g  135 (136)
                            +..+ ..|.||||+|+..|+.+++++|+. .|++++.+|..|
T Consensus        87 ------n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g  128 (166)
T PHA02743         87 ------NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQH  128 (166)
T ss_pred             ------CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCC
Confidence                  5666 479999999999999999999995 899999988766

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.88  E-value=1.3e-21  Score=137.09  Aligned_cols=115  Identities=10%  Similarity=-0.008  Sum_probs=96.9

Q ss_pred             HHHHHHhhhhhhhhhhhccCCchHHHHHHH------cCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHc---CCHHHHH
Q psy2185           9 RKSRDMETETEDELLMLTKDNETALHCAAQ------YGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY---GRLETVD   79 (136)
Q Consensus         9 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~------~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~---~~~~~~~   79 (136)
                      ..+.++|.+.|+++|.++ .+.||||.|+.      .++.+++++|+++|++++.++..|.||||.|+..   ++.++++
T Consensus        50 ~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~  128 (494)
T PHA02989         50 IKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLR  128 (494)
T ss_pred             hHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHH
Confidence            345567778899999886 67999999864      4788999999999999999999999999988765   6799999


Q ss_pred             HHHHhCCChhHhhhhhccCCCCCCCHHHHHHHc--CcHHHHHHHHhCCCCcch
Q psy2185          80 TLVRTHPGLIQAYNARAQSTLFPASPLHLASRN--GHRFYLQQKVQSDFCSSK  130 (136)
Q Consensus        80 ~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~--g~~~~~~~Ll~~g~~~~~  130 (136)
                      +|++.|+++.      ...+..|+||||+|+..  ++.+++++|+++|++++.
T Consensus       129 ~Ll~~Gadin------~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~  175 (494)
T PHA02989        129 FLLSKGINVN------DVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFE  175 (494)
T ss_pred             HHHHCCCCcc------cccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc
Confidence            9999999872      24567789999988754  578899999999998876

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.2e-21  Score=127.04  Aligned_cols=107  Identities=14%  Similarity=0.113  Sum_probs=74.4

Q ss_pred             hhhhccCCchH-HHHHHHcCCHHHHHHHHhcCCCCCccc----CCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhc
Q psy2185          22 LLMLTKDNETA-LHCAAQYGHTPVVSQLLEHSCDPTIRN----SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA   96 (136)
Q Consensus        22 ~~~~~~~g~t~-l~~a~~~g~~~~~~~ll~~~~~~~~~~----~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~   96 (136)
                      +..+|+.+.++ ||.|+.+|+.+++++|+++|++++.++    ..|.||||+|+..++.+++++|++.|+++       +
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-------N   97 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-------N   97 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------C
Confidence            44456655543 455666677777777777777777653    46777777777777777777777777776       4


Q ss_pred             cC-CCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          97 QS-TLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        97 ~~-~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .. +..|.||||.|+..|+.+++++|+.+|++++.+|..|
T Consensus        98 ~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G  137 (300)
T PHA02884         98 RYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDM  137 (300)
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            32 3457777777777777777777777777777776655

>KOG0510|consensus

Probab=99.87  E-value=5.6e-22  Score=139.98  Aligned_cols=120  Identities=23%  Similarity=0.228  Sum_probs=80.6

Q ss_pred             HHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHh-cCCC-CCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhH
Q psy2185          13 DMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLE-HSCD-PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ   90 (136)
Q Consensus        13 ~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~-~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~   90 (136)
                      ..+...|++++.+++++.||||.|+.+|++.+++-|++ .+.. .+..|..|.||||+|+..||..++++|+..|+....
T Consensus       290 d~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~  369 (929)
T KOG0510|consen  290 DNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLN  369 (929)
T ss_pred             HHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhc
Confidence            34445566666666666666666666666666666665 2222 244455566666666666666666666666666532


Q ss_pred             hhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccCC
Q psy2185          91 AYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRFA  136 (136)
Q Consensus        91 ~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~  136 (136)
                      .    ...|..|.||||+|+..|+..++++|+.+|+++..+|++|+
T Consensus       370 ~----~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~  411 (929)
T KOG0510|consen  370 M----SEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGK  411 (929)
T ss_pred             c----cccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccccc
Confidence            1    13478889999999999999999999999999988888874

>KOG0508|consensus

Probab=99.87  E-value=1.8e-22  Score=135.50  Aligned_cols=115  Identities=21%  Similarity=0.293  Sum_probs=107.2

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |-|.+-.+++++++ ++|+++++.++.|.|.|++||..||.+++++|++.|++++.++..|.|+||.|+..|+.+++++|
T Consensus       124 ACfDG~leivKyLv-E~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~L  202 (615)
T KOG0508|consen  124 ACFDGHLEIVKYLV-EHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLL  202 (615)
T ss_pred             HHhcchhHHHHHHH-HcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHH
Confidence            45777788888887 89999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSD  125 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g  125 (136)
                      +.+|+.+        ..|..|.|||..|+..|+.+++++|++.-
T Consensus       203 l~~ga~i--------~~d~~GmtPL~~Aa~tG~~~iVe~L~~~~  238 (615)
T KOG0508|consen  203 LKHGAKI--------DVDGHGMTPLLLAAVTGHTDIVERLLQCE  238 (615)
T ss_pred             HhCCcee--------eecCCCCchHHHHhhhcchHHHHHHhcCC
Confidence            9999886        56778999999999999999999999743

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.7e-21  Score=126.63  Aligned_cols=108  Identities=14%  Similarity=0.081  Sum_probs=94.2

Q ss_pred             HHHHhhhhhhhhhhhc----cCCchHHHHHHHcCCHHHHHHHHhcCCCCCcc-cCCCCCHHHHHHHcCCHHHHHHHHHhC
Q psy2185          11 SRDMETETEDELLMLT----KDNETALHCAAQYGHTPVVSQLLEHSCDPTIR-NSRHETALDLAAQYGRLETVDTLVRTH   85 (136)
Q Consensus        11 ~~~ll~~~~~~~~~~~----~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~   85 (136)
                      +.+++.+.|++++.++    ..|.||||+|+..++.+++++|+++|++++.+ +..|.||||+|+..++.+++++|++.|
T Consensus        48 ivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~G  127 (300)
T PHA02884         48 IIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYG  127 (300)
T ss_pred             HHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            4456668899999874    58999999999999999999999999999986 467999999999999999999999999


Q ss_pred             CChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q psy2185          86 PGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSD  125 (136)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g  125 (136)
                      +++       ...+..|.||||+|++.++.+++.++...+
T Consensus       128 Adi-------n~kd~~G~TpL~~A~~~~~~~~~~~~~~~~  160 (300)
T PHA02884        128 ADI-------NIQTNDMVTPIELALMICNNFLAFMICDNE  160 (300)
T ss_pred             CCC-------CCCCCCCCCHHHHHHHhCChhHHHHhcCCc
Confidence            998       778889999999999988777665554433

>KOG4177|consensus

Probab=99.87  E-value=1.1e-21  Score=144.22  Aligned_cols=118  Identities=25%  Similarity=0.271  Sum_probs=107.2

Q ss_pred             HHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhH
Q psy2185          11 SRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ   90 (136)
Q Consensus        11 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~   90 (136)
                      ...++...|.+++.++..|+||||.||.+|+.++|++|+++|++++.++..|+||||.|+..|+.+|+.+|+++|+++  
T Consensus       522 ~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~v--  599 (1143)
T KOG4177|consen  522 VAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASV--  599 (1143)
T ss_pred             HHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCC--
Confidence            445666788999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCC-----cchhhccC
Q psy2185          91 AYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFC-----SSKVTRRF  135 (136)
Q Consensus        91 ~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~-----~~~~~~~g  135 (136)
                           +..+.+|.|||++|.+.|+.++++.|+..+.+     +...+.+|
T Consensus       600 -----na~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g  644 (1143)
T KOG4177|consen  600 -----NAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKG  644 (1143)
T ss_pred             -----CcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcc
Confidence                 78899999999999999999999999999988     55555444

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.87  E-value=3.3e-21  Score=139.48  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=66.7

Q ss_pred             HHhhhhhhhhhhhccCCchHHHHHHHcC-CHHHHHHHHhcCCCCCcccCCCCCHHHHHHHc-CCHHHHHHHHHhCCChhH
Q psy2185          13 DMETETEDELLMLTKDNETALHCAAQYG-HTPVVSQLLEHSCDPTIRNSRHETALDLAAQY-GRLETVDTLVRTHPGLIQ   90 (136)
Q Consensus        13 ~ll~~~~~~~~~~~~~g~t~l~~a~~~g-~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~Ll~~~~~~~~   90 (136)
                      .++.+.|++++..|..|.||||+|+..| ..++++.|+..|++++..+..|.||||+|+.. +..+++++|++.|+++  
T Consensus       291 ~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadi--  368 (682)
T PHA02876        291 PKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANV--  368 (682)
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCC--
Confidence            3444555555555555666666655555 35555555555555555555555555555543 3445555555555554  


Q ss_pred             hhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          91 AYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        91 ~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                           +..+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus       369 -----n~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g  408 (682)
T PHA02876        369 -----NARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKI  408 (682)
T ss_pred             -----ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCC
Confidence                 4556666677777777666666666666666666555443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.86  E-value=3.3e-21  Score=131.02  Aligned_cols=113  Identities=12%  Similarity=-0.066  Sum_probs=73.3

Q ss_pred             HhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcc------cCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185          14 METETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIR------NSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus        14 ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~------~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      +|...|++++..  .+.||+|+|+..++.+++++|+++|++..-.      +..+.+++|.++..++.+++++|+++|++
T Consensus       136 ~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD  213 (437)
T PHA02795        136 FMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED  213 (437)
T ss_pred             HHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC
Confidence            333555555442  2345555555555555555555555432111      11244555555555555555555555555


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +       +.++..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       214 I-------N~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G  254 (437)
T PHA02795        214 I-------NQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNG  254 (437)
T ss_pred             c-------CcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            5       6778899999999999999999999999999999999877

>PHA02795 ankyrin-like protein; Provisional

Probab=99.86  E-value=6.2e-21  Score=129.72  Aligned_cols=116  Identities=11%  Similarity=-0.054  Sum_probs=99.7

Q ss_pred             HHHHhhhhhhhhh-hh-----ccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHh
Q psy2185          11 SRDMETETEDELL-ML-----TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT   84 (136)
Q Consensus        11 ~~~ll~~~~~~~~-~~-----~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   84 (136)
                      +..++...|++.+ ..     +..+.+++|.|+..++.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.
T Consensus       164 IVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~  243 (437)
T PHA02795        164 VVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLEN  243 (437)
T ss_pred             HHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            3455556665322 21     23478899999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHhhhhhccCCCCCCCHHHHHHHcC--------cHHHHHHHHhCCCCcchhhc
Q psy2185          85 HPGLIQAYNARAQSTLFPASPLHLASRNG--------HRFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~t~l~~A~~~g--------~~~~~~~Ll~~g~~~~~~~~  133 (136)
                      |+++       ...+..|+||||+|+..|        +.+++++|+++|++++....
T Consensus       244 GAdI-------N~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~  293 (437)
T PHA02795        244 GANV-------NAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKL  293 (437)
T ss_pred             CCCC-------CCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhH
Confidence            9998       788899999999999998        46899999999999876553

>PHA02946 ankyin-like protein; Provisional

Probab=99.86  E-value=7.1e-21  Score=131.65  Aligned_cols=121  Identities=9%  Similarity=-0.042  Sum_probs=79.9

Q ss_pred             HHhhhhhhhhhhhccCCchHHHHHHHcCC--HHHHHHHHhcCCCCCc-ccCCCCCHHHHHHHcCCHHHHHHHHHhCCChh
Q psy2185          13 DMETETEDELLMLTKDNETALHCAAQYGH--TPVVSQLLEHSCDPTI-RNSRHETALDLAAQYGRLETVDTLVRTHPGLI   89 (136)
Q Consensus        13 ~ll~~~~~~~~~~~~~g~t~l~~a~~~g~--~~~~~~ll~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~   89 (136)
                      ++|.+.|++++.+|..|.||||+|+..++  .+++++|+++|++++. .+..|.|||| |+..++.+++++|++.|+++.
T Consensus        89 ~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~  167 (446)
T PHA02946         89 AMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR  167 (446)
T ss_pred             HHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc
Confidence            34445677777777777777777766543  5667777777766653 3455555554 333455555555554443221


Q ss_pred             Hh----------------------------hhhhccCCCCCCCHHHHHHHcC--cHHHHHHHHhCCCCcchhhccC
Q psy2185          90 QA----------------------------YNARAQSTLFPASPLHLASRNG--HRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        90 ~~----------------------------~~~~~~~~~~~~t~l~~A~~~g--~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..                            ..+...++..|.||||+|+..|  +.+++++|+. |++++.+|..|
T Consensus       168 ~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G  242 (446)
T PHA02946        168 IVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFG  242 (446)
T ss_pred             ccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCC
Confidence            00                            0011567889999999999986  7889999985 89999999877

>KOG0510|consensus

Probab=99.85  E-value=3.5e-21  Score=136.04  Aligned_cols=103  Identities=31%  Similarity=0.402  Sum_probs=93.7

Q ss_pred             hhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH-hCCChhHhhhhhccCC
Q psy2185          21 ELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR-THPGLIQAYNARAQST   99 (136)
Q Consensus        21 ~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~   99 (136)
                      -++..|..|+||||+||..|+.++++.|+..|++++.++.++.||||.|+.+|+.++++-|++ .+...      .+..|
T Consensus       265 lv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rl------lne~D  338 (929)
T KOG0510|consen  265 LVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRL------LNESD  338 (929)
T ss_pred             HhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccc------ccccc
Confidence            356678899999999999999999999999999999999999999999999999999999998 33333      35678


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCCCcc
Q psy2185         100 LFPASPLHLASRNGHRFYLQQKVQSDFCSS  129 (136)
Q Consensus       100 ~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~  129 (136)
                      ..|.||||+|+++||..+++.|++.|+...
T Consensus       339 ~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~  368 (929)
T KOG0510|consen  339 LHGMTPLHLAAKSGHDRVVQLLLNKGALFL  368 (929)
T ss_pred             ccCCCchhhhhhcCHHHHHHHHHhcChhhh
Confidence            899999999999999999999999999876

>KOG0514|consensus

Probab=99.85  E-value=1.3e-21  Score=127.64  Aligned_cols=108  Identities=23%  Similarity=0.218  Sum_probs=88.1

Q ss_pred             hhhhhccCCchHHHHHHHcCCHHHHHHHHhcC--------------------------------------CCCCccc-CC
Q psy2185          21 ELLMLTKDNETALHCAAQYGHTPVVSQLLEHS--------------------------------------CDPTIRN-SR   61 (136)
Q Consensus        21 ~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~--------------------------------------~~~~~~~-~~   61 (136)
                      .+|..|.+|+|.|||++.++++++|+.||+.|                                      .++|.+- ..
T Consensus       260 vVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~  339 (452)
T KOG0514|consen  260 VVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQH  339 (452)
T ss_pred             HhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhh
Confidence            46677778888888888888888888877654                                      3344443 34


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHh-CCCCcchhhccC
Q psy2185          62 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQ-SDFCSSKVTRRF  135 (136)
Q Consensus        62 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g  135 (136)
                      |+|+|++|+.+|+.++++.||.+|+++       +.+|..|-|+|++|+++||.+++++||. .++|+...|..|
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdV-------NiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~Dg  407 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADV-------NIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDG  407 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCC-------ccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCC
Confidence            788888888999999999999999998       8899999999999999999999999996 588888888776

>PHA02917 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.5e-20  Score=134.88  Aligned_cols=123  Identities=13%  Similarity=0.041  Sum_probs=91.4

Q ss_pred             HHHHHhhhhhhhhhhhccCCchHHHHHHHc---CCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHH----HHHHHH
Q psy2185          10 KSRDMETETEDELLMLTKDNETALHCAAQY---GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLE----TVDTLV   82 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~----~~~~Ll   82 (136)
                      .+++++. .+..++..|..|.||||+||..   |+.+++++|++.|++++.++..|+||||+|+..|+.+    +++.|+
T Consensus        14 ~~~~l~~-~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll   92 (661)
T PHA02917         14 ELKQMLR-DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALL   92 (661)
T ss_pred             HHHHHHh-ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHH
Confidence            4556654 6666788899999999997555   7899999999999999999999999999998877633    344555


Q ss_pred             HhCC--ChhH----------------------hhhhhccCCCCCCCHHHHH--HHcCcHHHHHHHHhCCCCcchhhc
Q psy2185          83 RTHP--GLIQ----------------------AYNARAQSTLFPASPLHLA--SRNGHRFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus        83 ~~~~--~~~~----------------------~~~~~~~~~~~~~t~l~~A--~~~g~~~~~~~Ll~~g~~~~~~~~  133 (136)
                      +.+.  +...                      ...+.+.++..|+||||.|  +..|+.+++++|+++|++++.+|.
T Consensus        93 ~~~~~~n~~~~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~  169 (661)
T PHA02917         93 EATGYSNINDFNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDE  169 (661)
T ss_pred             hccCCCCCCCcchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccc
Confidence            4321  1000                      0002256788899999965  357899999999999999986654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.85  E-value=2.2e-20  Score=132.41  Aligned_cols=120  Identities=10%  Similarity=0.010  Sum_probs=102.3

Q ss_pred             HHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCC----HHHHHHHHhcCC--CCCcccCCCCCHHHH---HHHcC----
Q psy2185           7 LKRKSRDMETETEDELLMLTKDNETALHCAAQYGH----TPVVSQLLEHSC--DPTIRNSRHETALDL---AAQYG----   73 (136)
Q Consensus         7 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~----~~~~~~ll~~~~--~~~~~~~~g~t~l~~---a~~~~----   73 (136)
                      ....+.++|...|++++.. ..|.||||+|+..++    .+++++|+++|+  +++.++..|.||||.   +...+    
T Consensus       357 v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~  435 (672)
T PHA02730        357 VSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYH  435 (672)
T ss_pred             CcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhcccccc
Confidence            4456778888999999985 789999999988875    899999999987  578888999999984   33222    


Q ss_pred             -----CHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhcc
Q psy2185          74 -----RLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRR  134 (136)
Q Consensus        74 -----~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~  134 (136)
                           ..+++++|+..|+++       +.++..|.||||+|+..++.+++++|+++|++++.+|..
T Consensus       436 ~~e~~~~~ivk~LIs~GADI-------NakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~  494 (672)
T PHA02730        436 CYETILIDVFDILSKYMDDI-------DMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRS  494 (672)
T ss_pred             ccchhHHHHHHHHHhcccch-------hccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCc
Confidence                 235689999999998       788999999999999999999999999999999999863

>KOG4177|consensus

Probab=99.83  E-value=1.9e-20  Score=137.77  Aligned_cols=119  Identities=26%  Similarity=0.327  Sum_probs=100.9

Q ss_pred             HHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHh---------------------------------cCCCCC
Q psy2185          10 KSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLE---------------------------------HSCDPT   56 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~---------------------------------~~~~~~   56 (136)
                      ....++.+++.+++.....|.||||.|+..|+.++++.+++                                 +|++++
T Consensus       455 ~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~  534 (1143)
T KOG4177|consen  455 QIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVD  534 (1143)
T ss_pred             hhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCcee
Confidence            34455567777788887888888888887777777666654                                 346666


Q ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          57 IRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        57 ~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .++..+.||||.|+.+|+..+|++|+++|++.       ..++..|+||||.|+.+|+.+|+++|+++|+++|..|-+|
T Consensus       535 ~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv-------~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g  606 (1143)
T KOG4177|consen  535 LRTGRGYTPLHVAVHYGNVDLVKFLLEHGADV-------NAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDG  606 (1143)
T ss_pred             hhcccccchHHHHHhcCCchHHHHhhhCCccc-------cccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccC
Confidence            77788999999999999999999999999998       7788999999999999999999999999999999988765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.82  E-value=3.6e-20  Score=111.75  Aligned_cols=108  Identities=13%  Similarity=0.117  Sum_probs=85.0

Q ss_pred             hhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCC-----CCcccCCCCCHHHHHHHcCCH---HHHHHHHHhCCChhHhh
Q psy2185          21 ELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCD-----PTIRNSRHETALDLAAQYGRL---ETVDTLVRTHPGLIQAY   92 (136)
Q Consensus        21 ~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~-----~~~~~~~g~t~l~~a~~~~~~---~~~~~Ll~~~~~~~~~~   92 (136)
                      ..+..|..|.||||+||..|+...+..+.....+     +..++..|.||||+|+..++.   +++++|++.|+++    
T Consensus         9 ~~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi----   84 (154)
T PHA02736          9 FASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI----   84 (154)
T ss_pred             HHHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc----
Confidence            3556788999999999999984322111111111     234578899999999999886   4688999999987    


Q ss_pred             hhhccCC-CCCCCHHHHHHHcCcHHHHHHHHh-CCCCcchhhccC
Q psy2185          93 NARAQST-LFPASPLHLASRNGHRFYLQQKVQ-SDFCSSKVTRRF  135 (136)
Q Consensus        93 ~~~~~~~-~~~~t~l~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g  135 (136)
                         ..++ ..|+||||+|+..|+.+++++|+. .|++++.+|..|
T Consensus        85 ---n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g  126 (154)
T PHA02736         85 ---NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAF  126 (154)
T ss_pred             ---cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCC
Confidence               5666 489999999999999999999997 599999998876

>PHA02917 ankyrin-like protein; Provisional

Probab=99.82  E-value=3.6e-19  Score=127.83  Aligned_cols=115  Identities=12%  Similarity=0.054  Sum_probs=100.6

Q ss_pred             HHHHHHhhhhhhhhhhhccCCchHHHHHHHcC-----------------------CHHHHHHHHhcCCCCCcccCCCCCH
Q psy2185           9 RKSRDMETETEDELLMLTKDNETALHCAAQYG-----------------------HTPVVSQLLEHSCDPTIRNSRHETA   65 (136)
Q Consensus         9 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g-----------------------~~~~~~~ll~~~~~~~~~~~~g~t~   65 (136)
                      ..+..++...|++++..+..|.||||.|+..+                       ..+++++|+.+|++++.++..|.||
T Consensus       376 ~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAdIN~kd~~G~Tp  455 (661)
T PHA02917        376 YTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKDINMIDKRGETL  455 (661)
T ss_pred             HHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCCCCCCCCCCcCH
Confidence            45667777778877777778999999987543                       3567799999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHH-cCcHHHHHHHHhCCCCcch
Q psy2185          66 LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR-NGHRFYLQQKVQSDFCSSK  130 (136)
Q Consensus        66 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~-~g~~~~~~~Ll~~g~~~~~  130 (136)
                      ||+|+..++.+++++|++.|+++       ...+..|+||||+|+. .++.+++++|+++|++++.
T Consensus       456 Lh~Aa~~~~~~~v~~Ll~~GAdi-------n~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~~  514 (661)
T PHA02917        456 LHKAVRYNKQSLVSLLLESGSDV-------NIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLDC  514 (661)
T ss_pred             HHHHHHcCCHHHHHHHHHCcCCC-------CCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChhH
Confidence            99999999999999999999998       7888999999999996 6889999999999999864

>KOG0512|consensus

Probab=99.81  E-value=2.5e-19  Score=106.58  Aligned_cols=96  Identities=23%  Similarity=0.171  Sum_probs=88.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCC-CCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHH
Q psy2185          31 TALHCAAQYGHTPVVSQLLEHSCD-PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA  109 (136)
Q Consensus        31 t~l~~a~~~g~~~~~~~ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A  109 (136)
                      ..+.+|+..+....|+.|++..++ ++.+|.++.||||-|+.+|+.++++.|+..|+++       ..+...||||||.|
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-------~a~T~~GWTPLhSA  137 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-------EAKTNEGWTPLHSA  137 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-------ccccccCccchhhh
Confidence            345789999999999999987666 5999999999999999999999999999999998       77888999999999


Q ss_pred             HHcCcHHHHHHHHhCCCCcchhhc
Q psy2185         110 SRNGHRFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus       110 ~~~g~~~~~~~Ll~~g~~~~~~~~  133 (136)
                      |.-.+.+++-+||++|+|++...+
T Consensus       138 ckWnN~~va~~LLqhgaDVnA~t~  161 (228)
T KOG0512|consen  138 CKWNNFEVAGRLLQHGADVNAQTK  161 (228)
T ss_pred             hcccchhHHHHHHhccCccccccc
Confidence            999999999999999999998653

>KOG4214|consensus

Probab=99.81  E-value=3e-19  Score=95.76  Aligned_cols=61  Identities=23%  Similarity=0.269  Sum_probs=37.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCh
Q psy2185          28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL   88 (136)
Q Consensus        28 ~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~   88 (136)
                      .|++|||+|+.+|+.+++++|+..|++++.+|+.|.|||..|++.||..||++|++.|++.
T Consensus        33 ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdr   93 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADR   93 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCccc
Confidence            5556666666666666666666666666666666666666666666666666666666554

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.80  E-value=7e-19  Score=129.53  Aligned_cols=101  Identities=18%  Similarity=0.198  Sum_probs=87.7

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHH
Q psy2185          28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH  107 (136)
Q Consensus        28 ~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~  107 (136)
                      .+.++|+.||..|+.++++.|++.|++++..|..|.||||+|+..|+.+++++|++.|+++       +..+..|+||||
T Consensus       524 ~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-------n~~d~~G~TpL~  596 (823)
T PLN03192        524 NMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-------HIRDANGNTALW  596 (823)
T ss_pred             cchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-------CCcCCCCCCHHH
Confidence            4578999999999999999999999999999999999999999999999999999999987       667778888877


Q ss_pred             HHHH-------------------------------cCcHHHHHHHHhCCCCcchhhccC
Q psy2185         108 LASR-------------------------------NGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       108 ~A~~-------------------------------~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +|+.                               .|+.+++++|+++|+|++.+|..|
T Consensus       597 ~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G  655 (823)
T PLN03192        597 NAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQG  655 (823)
T ss_pred             HHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCC
Confidence            5554                               455556666778888888888776

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.80  E-value=3.1e-18  Score=99.20  Aligned_cols=104  Identities=31%  Similarity=0.367  Sum_probs=91.3

Q ss_pred             hccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCC
Q psy2185          25 LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPAS  104 (136)
Q Consensus        25 ~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t  104 (136)
                      .+..|.||||+|+..++.++++++++.+.....++..|.+|+|.|+..+..+++++|++.+...       ...+..+.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-------~~~~~~~~~   75 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-------NARDKDGNT   75 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-------cccCCCCCC
Confidence            4568999999999999999999999999888888889999999999999999999999988755       455678889


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         105 PLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       105 ~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |+|+|++.++.+++++|+++|.+++..+..|
T Consensus        76 ~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~  106 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLKHGADVNARDKDG  106 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHHcCCCCcccCCCC
Confidence            9999999999999999999998777766543

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02730 ankyrin-like protein; Provisional

Probab=99.80  E-value=1.8e-18  Score=122.86  Aligned_cols=107  Identities=19%  Similarity=0.170  Sum_probs=91.7

Q ss_pred             hhh-hhccCCchHHHHHHHcC---CHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcC--CHHHHHHHHHhCCChhHhhhh
Q psy2185          21 ELL-MLTKDNETALHCAAQYG---HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG--RLETVDTLVRTHPGLIQAYNA   94 (136)
Q Consensus        21 ~~~-~~~~~g~t~l~~a~~~g---~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~   94 (136)
                      +++ .+|..|.||||+|+..+   +.+++++|+++|++++.+|..|+||||+|+..+  +.+++++|++.|++...    
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~----  107 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASN----  107 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCc----
Confidence            566 77889999999999997   599999999999999999999999999999966  79999999999764411    


Q ss_pred             hccCCCCCCCHHHHHHH--cCcHHHHHHHHh-CCCCcchhh
Q psy2185          95 RAQSTLFPASPLHLASR--NGHRFYLQQKVQ-SDFCSSKVT  132 (136)
Q Consensus        95 ~~~~~~~~~t~l~~A~~--~g~~~~~~~Ll~-~g~~~~~~~  132 (136)
                       ...+.-+.+||+.++.  .++.+++++|+. .+++|+..+
T Consensus       108 -~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~  147 (672)
T PHA02730        108 -ELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNT  147 (672)
T ss_pred             -ccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhh
Confidence             3355568899999998  889999999996 778987664

>KOG0507|consensus

Probab=99.79  E-value=7.9e-20  Score=128.43  Aligned_cols=109  Identities=23%  Similarity=0.202  Sum_probs=100.6

Q ss_pred             hhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCC
Q psy2185          20 DELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST   99 (136)
Q Consensus        20 ~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   99 (136)
                      ...+..|.+|.|.||.||..|+.++++.|+++-+-+++.+..|.+|||+|+|.|+.+++++++.++..+       +..+
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~-------na~~  112 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDIL-------NAVN  112 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCC-------Cccc
Confidence            466778889999999999999999999999998888888999999999999999999999999998665       7788


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         100 LFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       100 ~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..|.||||+|+++||.+++.+|+++|+|+-++|+.+
T Consensus       113 ~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~  148 (854)
T KOG0507|consen  113 IENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSK  148 (854)
T ss_pred             ccCcCccchhhhhcchHHHHHHHhcCCCccccCccc
Confidence            899999999999999999999999999999998765

>KOG0505|consensus

Probab=99.79  E-value=4.9e-19  Score=120.29  Aligned_cols=118  Identities=23%  Similarity=0.198  Sum_probs=79.9

Q ss_pred             HHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCc---------------------------------
Q psy2185          11 SRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTI---------------------------------   57 (136)
Q Consensus        11 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~---------------------------------   57 (136)
                      +..++.++++++|..|..||||+|.|+..|+..++++++.+|+++..                                 
T Consensus        88 ~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~ie  167 (527)
T KOG0505|consen   88 MVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIE  167 (527)
T ss_pred             HHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHH
Confidence            44555566666666666677777777666777776666666533211                                 


Q ss_pred             --------------------------ccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHH
Q psy2185          58 --------------------------RNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR  111 (136)
Q Consensus        58 --------------------------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~  111 (136)
                                                +...|-|.+|.|+..|..++..+|+..+.++       ..+|..||||||.|+.
T Consensus       168 a~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~-------~~~D~dgWtPlHAAA~  240 (527)
T KOG0505|consen  168 AARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSV-------NIKDYDGWTPLHAAAH  240 (527)
T ss_pred             HHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCc-------ccccccCCCcccHHHH
Confidence                                      1223556666666666666666666666666       6777788888888888


Q ss_pred             cCcHHHHHHHHhCCCCcchhhccC
Q psy2185         112 NGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       112 ~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      -|..+++++|+++|++.+.+++.|
T Consensus       241 Wg~~~~~elL~~~ga~~d~~t~~g  264 (527)
T KOG0505|consen  241 WGQEDACELLVEHGADMDAKTKMG  264 (527)
T ss_pred             hhhHhHHHHHHHhhcccchhhhcC
Confidence            888888888888888887777655

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.76  E-value=1.4e-17  Score=120.12  Aligned_cols=97  Identities=23%  Similarity=0.191  Sum_probs=89.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHH
Q psy2185          32 ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR  111 (136)
Q Consensus        32 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~  111 (136)
                      .|+.|+..|+.+.++.|++.|++++.++..|.||||+|+..|+.+++++|++.|+++       +..+..|.||||+|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-------n~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-------TLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHH
Confidence            478899999999999999999999999999999999999999999999999999998       7888999999999999


Q ss_pred             cCcHHHHHHHHhC-------CCCcchhhccC
Q psy2185         112 NGHRFYLQQKVQS-------DFCSSKVTRRF  135 (136)
Q Consensus       112 ~g~~~~~~~Ll~~-------g~~~~~~~~~g  135 (136)
                      .|+.+++++|+++       |++++..+..|
T Consensus       158 ~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g  188 (664)
T PTZ00322        158 NGFREVVQLLSRHSQCHFELGANAKPDSFTG  188 (664)
T ss_pred             CCcHHHHHHHHhCCCcccccCCCCCccccCC
Confidence            9999999999998       77776665433

>KOG4214|consensus

Probab=99.76  E-value=9.9e-18  Score=89.96  Aligned_cols=97  Identities=19%  Similarity=0.207  Sum_probs=87.0

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHH
Q psy2185          31 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS  110 (136)
Q Consensus        31 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~  110 (136)
                      -.+.|++..|..+-|+-....|.+++.. ..|++|||+|+-+|+.+++++|+..|+++       +.+|+.|.|||..|+
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i-------~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANI-------QDKDKYGITPLLSAV   75 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhcccc-------CCccccCCcHHHHHH
Confidence            3468899999999999888788666554 48999999999999999999999999999       889999999999999


Q ss_pred             HcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         111 RNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       111 ~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..||.+++++|+++|+|..++...|
T Consensus        76 wEGH~~cVklLL~~GAdrt~~~PdG  100 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNGADRTIHAPDG  100 (117)
T ss_pred             HHhhHHHHHHHHHcCcccceeCCCc
Confidence            9999999999999999988776655

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=9.1e-18  Score=92.40  Aligned_cols=82  Identities=28%  Similarity=0.345  Sum_probs=70.1

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |+..+..+.++.++. .+.+++.    |.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..++.+++++|
T Consensus         4 A~~~~~~~~~~~ll~-~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~L   78 (89)
T PF12796_consen    4 AAQNGNLEILKFLLE-KGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLL   78 (89)
T ss_dssp             HHHTTTHHHHHHHHH-TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHH-CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            345555666766665 6666665    88999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCh
Q psy2185          82 VRTHPGL   88 (136)
Q Consensus        82 l~~~~~~   88 (136)
                      ++.|+++
T Consensus        79 l~~g~~~   85 (89)
T PF12796_consen   79 LEHGADV   85 (89)
T ss_dssp             HHTTT-T
T ss_pred             HHcCCCC
Confidence            9999887

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0505|consensus

Probab=99.76  E-value=4.8e-18  Score=115.56  Aligned_cols=132  Identities=20%  Similarity=0.154  Sum_probs=111.2

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      +.+..+.+..++ ..+..++..+.+|.|++|.+|.-.+.+||++++++|++++..+..+|||+|.|+..|+..++.+|+.
T Consensus        49 ~~~d~~ev~~ll-~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~  127 (527)
T KOG0505|consen   49 SRGDLEEVRKLL-NRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQ  127 (527)
T ss_pred             ccccHHHHHHHh-ccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHH
Confidence            444455555554 5668889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChhHhhh----------------------------------------------------hhccCCCCCCCHHHHHHH
Q psy2185          84 THPGLIQAYN----------------------------------------------------ARAQSTLFPASPLHLASR  111 (136)
Q Consensus        84 ~~~~~~~~~~----------------------------------------------------~~~~~~~~~~t~l~~A~~  111 (136)
                      +|++...+-.                                                    ........|.|.||.|+.
T Consensus       128 ~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa  207 (527)
T KOG0505|consen  128 HGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAA  207 (527)
T ss_pred             hhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHh
Confidence            9886522111                                                    111233358999999999


Q ss_pred             cCcHHHHHHHHhCCCCcchhhccCC
Q psy2185         112 NGHRFYLQQKVQSDFCSSKVTRRFA  136 (136)
Q Consensus       112 ~g~~~~~~~Ll~~g~~~~~~~~~g~  136 (136)
                      .|+.++.++|+++|.+++++|..|.
T Consensus       208 ~Gy~e~~~lLl~ag~~~~~~D~dgW  232 (527)
T KOG0505|consen  208 NGYTEVAALLLQAGYSVNIKDYDGW  232 (527)
T ss_pred             hhHHHHHHHHHHhccCcccccccCC
Confidence            9999999999999999999998873

>PHA02792 ankyrin-like protein; Provisional

Probab=99.76  E-value=1.3e-17  Score=117.67  Aligned_cols=118  Identities=7%  Similarity=-0.102  Sum_probs=96.9

Q ss_pred             HHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCC--CCHHHHHHHcCCHH---HHHHHHH
Q psy2185           9 RKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH--ETALDLAAQYGRLE---TVDTLVR   83 (136)
Q Consensus         9 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g--~t~l~~a~~~~~~~---~~~~Ll~   83 (136)
                      ..+.+++...|.+..  .......++.|+..|+.+++++|+++|++++.++..|  .||||+|+.....+   ++++|++
T Consensus       321 ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs  398 (631)
T PHA02792        321 INVIKCMIDEGATLY--RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP  398 (631)
T ss_pred             HHHHHHHHHCCCccc--cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh
Confidence            344556666676654  2235667889999999999999999999999888664  68999887766544   5788889


Q ss_pred             hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          84 THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .|+++       +.++..|+||||+|+..++.+++++|+++|++++.+|..|
T Consensus       399 ~GADI-------N~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G  443 (631)
T PHA02792        399 YIDDI-------NKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYG  443 (631)
T ss_pred             cCCcc-------ccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            99988       7788899999999999999999999999999999998876

>KOG0507|consensus

Probab=99.75  E-value=3.9e-18  Score=120.09  Aligned_cols=133  Identities=34%  Similarity=0.427  Sum_probs=107.4

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |+|.+..+.+..++.+. ..+|..+..|.||||.|+++||.+++.+|+++++++-+++..+.|++.+|++.|..++++.|
T Consensus        89 aaw~g~~e~vkmll~q~-d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~l  167 (854)
T KOG0507|consen   89 AAWNGNLEIVKMLLLQT-DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQML  167 (854)
T ss_pred             hhhcCcchHHHHHHhcc-cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHH
Confidence            56777777776666555 77888888999999999999999999999999999989999999999999999999999999


Q ss_pred             HHhCCChhHhh-hhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          82 VRTHPGLIQAY-NARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        82 l~~~~~~~~~~-~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +...-...... .....++..+.+|||+|+.+||.++++.|++.|.++|...++|
T Consensus       168 l~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g  222 (854)
T KOG0507|consen  168 LQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG  222 (854)
T ss_pred             hhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc
Confidence            88722221100 0112455678899999999999999999999999999988876

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.75  E-value=1.2e-17  Score=122.10  Aligned_cols=117  Identities=20%  Similarity=0.096  Sum_probs=85.2

Q ss_pred             hhhhhhhccCCchHHH-HHHHcCCHHHHHHHHhcCCC--C----------------------------------------
Q psy2185          19 EDELLMLTKDNETALH-CAAQYGHTPVVSQLLEHSCD--P----------------------------------------   55 (136)
Q Consensus        19 ~~~~~~~~~~g~t~l~-~a~~~g~~~~~~~ll~~~~~--~----------------------------------------   55 (136)
                      +.++|..|..|.|||| .|+..++.++++.|+++++.  .                                        
T Consensus        42 ~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~  121 (743)
T TIGR00870        42 KLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQY  121 (743)
T ss_pred             ccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhcccc
Confidence            6778888888888888 77777888888888776630  0                                        


Q ss_pred             CcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhh-------hccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCc
Q psy2185          56 TIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNA-------RAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCS  128 (136)
Q Consensus        56 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~-------~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~  128 (136)
                      ...+..|.||||+|+..++.+++++|++.|+++......       .......|.||||.|+..|+.+++++|+++|+|+
T Consensus       122 ~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi  201 (743)
T TIGR00870       122 TSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI  201 (743)
T ss_pred             ccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch
Confidence            001235788899998888899999998888877421110       0011235788999999888888999999888888


Q ss_pred             chhhccC
Q psy2185         129 SKVTRRF  135 (136)
Q Consensus       129 ~~~~~~g  135 (136)
                      +.+|..|
T Consensus       202 n~~d~~g  208 (743)
T TIGR00870       202 LTADSLG  208 (743)
T ss_pred             hhHhhhh
Confidence            8888765

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0502|consensus

Probab=99.75  E-value=2.4e-18  Score=106.03  Aligned_cols=114  Identities=21%  Similarity=0.152  Sum_probs=103.3

Q ss_pred             HHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhH
Q psy2185          11 SRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ   90 (136)
Q Consensus        11 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~   90 (136)
                      +.+++++.|++++..-+...++|..|+..|..++++.|++.+.+++.-|++|.|||.+|++.++.+|++.|+..|+++  
T Consensus       175 vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~--  252 (296)
T KOG0502|consen  175 VVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADV--  252 (296)
T ss_pred             HHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCc--
Confidence            457778999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhh
Q psy2185          91 AYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVT  132 (136)
Q Consensus        91 ~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~  132 (136)
                           +..+..|++++.+|+..|+. +++++++.-+.....|
T Consensus       253 -----t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~  288 (296)
T KOG0502|consen  253 -----TQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQD  288 (296)
T ss_pred             -----ccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhc
Confidence                 88899999999999999998 7777777554444333

>PHA02792 ankyrin-like protein; Provisional

Probab=99.74  E-value=2.8e-17  Score=115.94  Aligned_cols=114  Identities=7%  Similarity=-0.048  Sum_probs=97.1

Q ss_pred             HHHHHhhhhhhhhhhhccCC--chHHHHHHHcCCH---HHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHh
Q psy2185          10 KSRDMETETEDELLMLTKDN--ETALHCAAQYGHT---PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT   84 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~~~g--~t~l~~a~~~g~~---~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   84 (136)
                      .+.++|...|++++.+|..|  .||||+|+.....   +++++++++|++++.++..|.||||+|+..++.+++++|++.
T Consensus       353 eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~  432 (631)
T PHA02792        353 KVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDN  432 (631)
T ss_pred             HHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHC
Confidence            34566678899999998775  6999998776654   467888999999999999999999999999999999999999


Q ss_pred             CCChhHhhhhhccCCCCCCCHHHHHHH--c--------CcHHHHHHHHhCCCCcch
Q psy2185          85 HPGLIQAYNARAQSTLFPASPLHLASR--N--------GHRFYLQQKVQSDFCSSK  130 (136)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~t~l~~A~~--~--------g~~~~~~~Ll~~g~~~~~  130 (136)
                      |+++       +..+..|.|||++|+.  .        ...+++++|+++|.+++.
T Consensus       433 GADI-------N~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~~  481 (631)
T PHA02792        433 GADI-------NITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIEC  481 (631)
T ss_pred             CCCC-------CCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChhH
Confidence            9998       7889999999999976  2        225679999999988753

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.72  E-value=3.1e-17  Score=81.99  Aligned_cols=54  Identities=35%  Similarity=0.509  Sum_probs=35.1

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185          29 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus        29 g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      |.||||+||..|+.+++++|++.|.+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567777777777777777777777777777777777777777777777777664

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.71  E-value=1.9e-17  Score=83.26  Aligned_cols=51  Identities=35%  Similarity=0.543  Sum_probs=30.8

Q ss_pred             hhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHH
Q psy2185          19 EDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA   69 (136)
Q Consensus        19 ~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a   69 (136)
                      ..+++.+|..|.||||+||.+|+.+++++|++.+++++.+|..|+||+|+|
T Consensus         6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            478888888899999999999999999988888899988888899998886

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.70  E-value=5.7e-16  Score=98.07  Aligned_cols=103  Identities=23%  Similarity=0.272  Sum_probs=71.8

Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCC-----HHHHHHHHHhCC--ChhHhhhhhccCC
Q psy2185          27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR-----LETVDTLVRTHP--GLIQAYNARAQST   99 (136)
Q Consensus        27 ~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~Ll~~~~--~~~~~~~~~~~~~   99 (136)
                      ..+.++++.++..+...++.+++..+.+++.++..|.||+|+|+..++     .++++.|++.++  ..      ....+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~------~~~~~  144 (235)
T COG0666          71 LDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDV------NNLRD  144 (235)
T ss_pred             ccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCC------ccccC
Confidence            346677777777777777777777777777777777777777777777     777777777776  22      14456


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         100 LFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       100 ~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..|+||||+|+..|+.+++++|+..|++++.++..|
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g  180 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYG  180 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCC
Confidence            677777777777777777777777777776665544

>KOG0514|consensus

Probab=99.69  E-value=1.1e-16  Score=105.05  Aligned_cols=96  Identities=25%  Similarity=0.260  Sum_probs=85.4

Q ss_pred             hhhhhc-cCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhC-CChhHhhhhhccC
Q psy2185          21 ELLMLT-KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH-PGLIQAYNARAQS   98 (136)
Q Consensus        21 ~~~~~~-~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~   98 (136)
                      ++|.+- ..|.|.|+.|+.+|..++++.||.+|+++|+.|.+|.|+|+.|+.+||.+++++||... ++.       ...
T Consensus       331 nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~-------sLt  403 (452)
T KOG0514|consen  331 DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDI-------SLT  403 (452)
T ss_pred             CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccc-------eee
Confidence            455543 47889999999999999999999999999999999999999999999999999999864 444       678


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHh
Q psy2185          99 TLFPASPLHLASRNGHRFYLQQKVQ  123 (136)
Q Consensus        99 ~~~~~t~l~~A~~~g~~~~~~~Ll~  123 (136)
                      |..|-|+|.+|...||.+|.-+|..
T Consensus       404 D~DgSTAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  404 DVDGSTALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             cCCCchhhhhHHhcCchHHHHHHHH
Confidence            8899999999999999999888854

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.69  E-value=4.5e-16  Score=98.52  Aligned_cols=106  Identities=22%  Similarity=0.278  Sum_probs=98.0

Q ss_pred             HHhhhhhhhhhhhccCCchHHHHHHHcCC-----HHHHHHHHhcCC---CCCcccCCCCCHHHHHHHcCCHHHHHHHHHh
Q psy2185          13 DMETETEDELLMLTKDNETALHCAAQYGH-----TPVVSQLLEHSC---DPTIRNSRHETALDLAAQYGRLETVDTLVRT   84 (136)
Q Consensus        13 ~ll~~~~~~~~~~~~~g~t~l~~a~~~g~-----~~~~~~ll~~~~---~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   84 (136)
                      ..+...+.+++..+..|.||+|+|+..++     .++++.+++.|+   ....++..|.||||+|+..|+.+++..|++.
T Consensus        90 ~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~  169 (235)
T COG0666          90 KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEA  169 (235)
T ss_pred             HHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhc
Confidence            56667888899999999999999999999     999999999999   5667799999999999999999999999999


Q ss_pred             CCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q psy2185          85 HPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSD  125 (136)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g  125 (136)
                      ++++       ...+..|.|++++|+..++.+++..+++.+
T Consensus       170 ~~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         170 GADP-------NSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCC-------cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9988       666889999999999999999999999965

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.69  E-value=2e-16  Score=79.04  Aligned_cols=54  Identities=28%  Similarity=0.335  Sum_probs=45.3

Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHH
Q psy2185          62 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKV  122 (136)
Q Consensus        62 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll  122 (136)
                      |.||+|+|+..|+.+++++|++.+.++       +..|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-------n~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADI-------NAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGT-------T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            689999999999999999999999887       667889999999999999999999986

...

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.69  E-value=1.5e-15  Score=87.82  Aligned_cols=107  Identities=30%  Similarity=0.387  Sum_probs=92.9

Q ss_pred             HHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185           8 KRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus         8 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      .+.+.. +...+...+..+..|.+|+|+|+..+..++++++++.++.++..+..+.||+|+|+..++.+++++|+..+..
T Consensus        20 ~~~i~~-li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~   98 (126)
T cd00204          20 LEVVKL-LLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD   98 (126)
T ss_pred             HHHHHH-HHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            344444 4466666678888999999999999999999999999988888888999999999999999999999998866


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHH
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKV  122 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll  122 (136)
                      .       ...+..+.||++.|...++.+++++|+
T Consensus        99 ~-------~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          99 V-------NARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             C-------cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            5       567778999999999999999999875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0195|consensus

Probab=99.68  E-value=1.5e-16  Score=101.99  Aligned_cols=116  Identities=19%  Similarity=0.206  Sum_probs=99.7

Q ss_pred             HHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCh
Q psy2185           9 RKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL   88 (136)
Q Consensus         9 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~   88 (136)
                      ..+.+++...|+.+|..+....||||.|+.+||-++++.|++..++++..+..|.|||||||.-|...+.+-|+..|+..
T Consensus        47 ~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v  126 (448)
T KOG0195|consen   47 VAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAV  126 (448)
T ss_pred             HHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhcccee
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchh
Q psy2185          89 IQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKV  131 (136)
Q Consensus        89 ~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~  131 (136)
                             +..++.|.|||..|.-.-...+.+.--++|-+++..
T Consensus       127 -------~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nri  162 (448)
T KOG0195|consen  127 -------NICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNRI  162 (448)
T ss_pred             -------eecccCCCCchhhhchHHHHHHHHHHHHhCCCCCcc
Confidence                   788889999999885543333444444577777643

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.67  E-value=6.1e-16  Score=113.28  Aligned_cols=102  Identities=21%  Similarity=0.125  Sum_probs=84.9

Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHhcCCCCCccc--------------CCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhh
Q psy2185          27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN--------------SRHETALDLAAQYGRLETVDTLVRTHPGLIQAY   92 (136)
Q Consensus        27 ~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~   92 (136)
                      ..|.||||+|+..|+.+++++|+++|++++.++              ..|.+|||+|+..++.+++++|++.++++    
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadi----  201 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADI----  201 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcch----
Confidence            469999999999999999999999999998653              35899999999999999999999999887    


Q ss_pred             hhhccCCCCCCCHHHHHHHcC---------cHHHHHHHHhCCCCc-------chhhccC
Q psy2185          93 NARAQSTLFPASPLHLASRNG---------HRFYLQQKVQSDFCS-------SKVTRRF  135 (136)
Q Consensus        93 ~~~~~~~~~~~t~l~~A~~~g---------~~~~~~~Ll~~g~~~-------~~~~~~g  135 (136)
                         +..|..|+||||+|+..+         ...+.+++++.++..       ++.|..|
T Consensus       202 ---n~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g  257 (743)
T TIGR00870       202 ---LTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQG  257 (743)
T ss_pred             ---hhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCC
Confidence               667888999999999987         234667777665543       4556554

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG1710|consensus

Probab=99.67  E-value=1.3e-15  Score=97.39  Aligned_cols=108  Identities=17%  Similarity=0.117  Sum_probs=93.9

Q ss_pred             HHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcc-cCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185           9 RKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIR-NSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus         9 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      +....++.. --++|..|.+|.|+|..|+..|+.++++.+++.|+++|.+ ...+.||||.|+..|+.++.++|++.|+.
T Consensus        26 ~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~  104 (396)
T KOG1710|consen   26 EAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGAR  104 (396)
T ss_pred             HHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCc
Confidence            344445433 4568999999999999999999999999999999999775 45689999999999999999999999998


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQS  124 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~  124 (136)
                      +       ...+.-|+|+-..|+..|+.+++..+-++
T Consensus       105 ~-------~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  105 M-------YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             c-------ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            8       66777899999999999999999887543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.66  E-value=1.3e-16  Score=80.15  Aligned_cols=55  Identities=33%  Similarity=0.431  Sum_probs=32.4

Q ss_pred             HHhcC-CCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHH
Q psy2185          48 LLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA  109 (136)
Q Consensus        48 ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A  109 (136)
                      |++++ .+++.+|..|.||||+|+..|+.+++++|+..++++       ..++..|+||+|+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-------~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-------NAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-------T---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-------CCCcCCCCCHHHhC
Confidence            46666 888999999999999999999999999999999998       88999999999987

>KOG0515|consensus

Probab=99.64  E-value=1e-15  Score=104.70  Aligned_cols=96  Identities=21%  Similarity=0.158  Sum_probs=70.8

Q ss_pred             hhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCC
Q psy2185          21 ELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL  100 (136)
Q Consensus        21 ~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  100 (136)
                      ++...+..|.|+||.|+..||.++|+||++.|++++..|.+||||||.|+..++..+++.|++.|+.+.      ...-.
T Consensus       575 DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~Gaavf------AsTlS  648 (752)
T KOG0515|consen  575 DPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVF------ASTLS  648 (752)
T ss_pred             CCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEE------eeecc
Confidence            455566778888888888888888888888888888888888888888888888888888888877652      22333


Q ss_pred             CCCCHHHHHH--HcCcHHHHHHHH
Q psy2185         101 FPASPLHLAS--RNGHRFYLQQKV  122 (136)
Q Consensus       101 ~~~t~l~~A~--~~g~~~~~~~Ll  122 (136)
                      .+.|+...+-  +.|+.+|.++|-
T Consensus       649 DmeTa~eKCee~eeGY~~CsqyL~  672 (752)
T KOG0515|consen  649 DMETAAEKCEEMEEGYDQCSQYLY  672 (752)
T ss_pred             cccchhhhcchhhhhHHHHHHHHH
Confidence            4567776663  357777877774

>KOG0515|consensus

Probab=99.62  E-value=2.6e-15  Score=102.76  Aligned_cols=89  Identities=25%  Similarity=0.182  Sum_probs=83.7

Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcC
Q psy2185          34 HCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNG  113 (136)
Q Consensus        34 ~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g  113 (136)
                      .=|+..|-+++|+..+..-.++...+..|.|+||-|+-.||.++|++|++.|+++       +..|.+||||||+|+.-+
T Consensus       555 LDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-------Na~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-------NAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-------cCccCCCCchhhhhhhcC
Confidence            4588999999999999888899899999999999999999999999999999999       889999999999999999


Q ss_pred             cHHHHHHHHhCCCCcc
Q psy2185         114 HRFYLQQKVQSDFCSS  129 (136)
Q Consensus       114 ~~~~~~~Ll~~g~~~~  129 (136)
                      +..++++|++.|+.+-
T Consensus       628 nv~~ckqLVe~Gaavf  643 (752)
T KOG0515|consen  628 NVPMCKQLVESGAAVF  643 (752)
T ss_pred             chHHHHHHHhccceEE
Confidence            9999999999998763

>KOG3676|consensus

Probab=99.59  E-value=1.6e-14  Score=102.84  Aligned_cols=123  Identities=15%  Similarity=-0.001  Sum_probs=95.5

Q ss_pred             HHHHHHHHHhhhhhhhhhh---h-ccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcc-----------------------
Q psy2185           6 NLKRKSRDMETETEDELLM---L-TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIR-----------------------   58 (136)
Q Consensus         6 ~~~~~~~~ll~~~~~~~~~---~-~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~-----------------------   58 (136)
                      +.-+.++.++.-.+.-+|.   . ...|.|+||+|+.+.+.++|.+|++.|+|++.+                       
T Consensus       157 ~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~  236 (782)
T KOG3676|consen  157 GHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGY  236 (782)
T ss_pred             hHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcce
Confidence            3334444454444433332   1 236899999999999999999999998887652                       


Q ss_pred             cCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCC--cchhhccC
Q psy2185          59 NSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFC--SSKVTRRF  135 (136)
Q Consensus        59 ~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g  135 (136)
                      -..|+.||.+|+--++++++++|+++++++       +.+|.+|+|.||..+.+-..++..+++++|++  ..++|+.|
T Consensus       237 ~YfGEyPLSfAAC~nq~eivrlLl~~gAd~-------~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qg  308 (782)
T KOG3676|consen  237 FYFGEYPLSFAACTNQPEIVRLLLAHGADP-------NAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQG  308 (782)
T ss_pred             eeeccCchHHHHHcCCHHHHHHHHhcCCCC-------CccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCC
Confidence            124678999999999999999999999998       88899999999999888888888899999988  77777765

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.58  E-value=1.1e-14  Score=105.36  Aligned_cols=98  Identities=26%  Similarity=0.262  Sum_probs=78.2

Q ss_pred             HHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHh
Q psy2185          12 RDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQA   91 (136)
Q Consensus        12 ~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~   91 (136)
                      ..++...|.+++..|..|.||||+||..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+.++......
T Consensus        98 vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~  177 (664)
T PTZ00322         98 ARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFEL  177 (664)
T ss_pred             HHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCccccc
Confidence            35556788999999999999999999999999999999999999999999999999999999999999999982222111


Q ss_pred             hhhhccCCCCCCCHHHHH
Q psy2185          92 YNARAQSTLFPASPLHLA  109 (136)
Q Consensus        92 ~~~~~~~~~~~~t~l~~A  109 (136)
                      ..+....+..|.+|+..+
T Consensus       178 ga~~~~~~~~g~~~~~~~  195 (664)
T PTZ00322        178 GANAKPDSFTGKPPSLED  195 (664)
T ss_pred             CCCCCccccCCCCccchh
Confidence            111244445555554444

>KOG3676|consensus

Probab=99.46  E-value=3.7e-13  Score=96.06  Aligned_cols=110  Identities=19%  Similarity=0.175  Sum_probs=96.5

Q ss_pred             HHHHHhhhhhhhhhhh---------cc--------------CCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHH
Q psy2185          10 KSRDMETETEDELLML---------TK--------------DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL   66 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~---------~~--------------~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l   66 (136)
                      .+..++.+.|++++.+         |.              .|..||..|+.-++.+++++|+++|++++.+|+.|.|.|
T Consensus       198 ~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVL  277 (782)
T KOG3676|consen  198 ELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVL  277 (782)
T ss_pred             HHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHH
Confidence            3456667888888865         11              367899999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2185          67 DLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQS  124 (136)
Q Consensus        67 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~  124 (136)
                      |..+..-..++..++++.|++.     .....+..|-|||.+|+..|..++.+.++++
T Consensus       278 H~lVi~~~~~My~~~L~~ga~~-----l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  278 HMLVIHFVTEMYDLALELGANA-----LEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCc-----cccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999998889999999999981     1267888999999999999999999999987

>KOG1710|consensus

Probab=99.44  E-value=1.1e-12  Score=84.22  Aligned_cols=101  Identities=18%  Similarity=0.090  Sum_probs=88.8

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHH
Q psy2185          29 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL  108 (136)
Q Consensus        29 g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~  108 (136)
                      -.+||.-+...+..+-..-|++-.-+.+.+|..|.++|..|+..|+.+.+++|++.|++++      ..+...+.||||.
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN------~~qhg~~YTpLmF   85 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN------DKQHGTLYTPLMF   85 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC------cccccccccHHHH
Confidence            4578999999999998888887766678899999999999999999999999999999983      3456678999999


Q ss_pred             HHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         109 ASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       109 A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |+-.|+.++.++|++.|+.+...|.=|
T Consensus        86 AALSGn~dvcrllldaGa~~~~vNsvg  112 (396)
T KOG1710|consen   86 AALSGNQDVCRLLLDAGARMYLVNSVG  112 (396)
T ss_pred             HHHcCCchHHHHHHhccCccccccchh
Confidence            999999999999999999987776543

>KOG4369|consensus

Probab=99.43  E-value=1e-13  Score=102.16  Aligned_cols=116  Identities=22%  Similarity=0.236  Sum_probs=90.5

Q ss_pred             HHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCc-ccCCCCCHHHHHHHcCCHHHHHHHHHhCCCh
Q psy2185          10 KSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTI-RNSRHETALDLAAQYGRLETVDTLVRTHPGL   88 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~   88 (136)
                      ...+++...|.++..+|+.|.+||.+|+-.||..+|+.|+.+.+++.. .|..+.|+|.+||..|+.+++++|+..|++.
T Consensus       771 e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gank  850 (2131)
T KOG4369|consen  771 EEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANK  850 (2131)
T ss_pred             HHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccc
Confidence            445677788888888888888888888888888888888888888754 4577888888888888888888888888765


Q ss_pred             hHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhh
Q psy2185          89 IQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVT  132 (136)
Q Consensus        89 ~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~  132 (136)
                             .-++....|||.+|..-|+.+++.+|+.+|+.++.+.
T Consensus       851 -------ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrt  887 (2131)
T KOG4369|consen  851 -------EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT  887 (2131)
T ss_pred             -------cccchhhcCchhhhcCcchHHHHHHHhhccccccccc
Confidence                   3455566777777777777777777777777776654

>PF13606 Ank_3: Ankyrin repeat

Probab=99.41  E-value=4e-13  Score=58.56  Aligned_cols=30  Identities=23%  Similarity=0.256  Sum_probs=27.3

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhCCCCcch
Q psy2185         101 FPASPLHLASRNGHRFYLQQKVQSDFCSSK  130 (136)
Q Consensus       101 ~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~  130 (136)
                      +|+||||+|++.|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            478999999999999999999999999873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.40  E-value=5e-13  Score=59.81  Aligned_cols=33  Identities=18%  Similarity=0.192  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhc
Q psy2185         101 FPASPLHLASRNGHRFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus       101 ~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~  133 (136)
                      +|.||||+|+..|+.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478999999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818|consensus

Probab=99.32  E-value=1.9e-11  Score=83.60  Aligned_cols=87  Identities=18%  Similarity=0.260  Sum_probs=79.7

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCccc-CCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHH
Q psy2185          31 TALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA  109 (136)
Q Consensus        31 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A  109 (136)
                      ..||.+++.|+.+..-.|+..|++.+... ..|.||||.|++.|+.--+++|+-+|+++       ...|.+|.||+.+|
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-------~a~d~~GmtP~~~A  207 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-------GAQDSSGMTPVDYA  207 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-------CCCCCCCCcHHHHH
Confidence            35899999999999999999999998876 45999999999999999999999999999       88999999999999


Q ss_pred             HHcCcHHHHHHHHhC
Q psy2185         110 SRNGHRFYLQQKVQS  124 (136)
Q Consensus       110 ~~~g~~~~~~~Ll~~  124 (136)
                      .+.||-++.+.|++.
T Consensus       208 R~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  208 RQGGHHELAERLVEI  222 (669)
T ss_pred             HhcCchHHHHHHHHH
Confidence            999999988887653

>KOG4369|consensus

Probab=99.27  E-value=5.7e-12  Score=93.32  Aligned_cols=115  Identities=23%  Similarity=0.222  Sum_probs=96.8

Q ss_pred             HHHHhhhhhhhhhhh-ccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChh
Q psy2185          11 SRDMETETEDELLML-TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI   89 (136)
Q Consensus        11 ~~~ll~~~~~~~~~~-~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~   89 (136)
                      +.+.+++..++++.. |+.+.|+|.+||..|..++++.||..|++-..++....|||.+|...|..+++..|+..|..+.
T Consensus       805 vV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseIn  884 (2131)
T KOG4369|consen  805 VVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEIN  884 (2131)
T ss_pred             HHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccc
Confidence            345556667777764 5689999999999999999999999999988888888999999999999999999999997763


Q ss_pred             HhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcch
Q psy2185          90 QAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSK  130 (136)
Q Consensus        90 ~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~  130 (136)
                      .     ....+.|..||++|...||....+.|++.|.|+|.
T Consensus       885 S-----rtgSklgisPLmlatmngh~~at~~ll~~gsdiNa  920 (2131)
T KOG4369|consen  885 S-----RTGSKLGISPLMLATMNGHQAATLSLLQPGSDINA  920 (2131)
T ss_pred             c-----ccccccCcchhhhhhhccccHHHHHHhcccchhcc
Confidence            3     34566788999999999999999999998888764

>KOG0783|consensus

Probab=99.26  E-value=8.1e-12  Score=89.98  Aligned_cols=85  Identities=26%  Similarity=0.277  Sum_probs=78.1

Q ss_pred             hhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccC-CCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCC
Q psy2185          21 ELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS-RHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST   99 (136)
Q Consensus        21 ~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   99 (136)
                      -.+..|..|+++||+++..+..++++||+++|+++..+|. .|+||||-|..+|+.+|+-.|+.+|..+       ..+|
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL-------~i~D  116 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSL-------RIKD  116 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCce-------EEec
Confidence            4677899999999999999999999999999999998885 5999999999999999999999999888       7899


Q ss_pred             CCCCCHHHHHHHc
Q psy2185         100 LFPASPLHLASRN  112 (136)
Q Consensus       100 ~~~~t~l~~A~~~  112 (136)
                      ..|.+||..-++.
T Consensus       117 keglsplq~~~r~  129 (1267)
T KOG0783|consen  117 KEGLSPLQFLSRV  129 (1267)
T ss_pred             ccCCCHHHHHhhc
Confidence            9999999988773

>KOG0506|consensus

Probab=99.25  E-value=1.2e-11  Score=84.13  Aligned_cols=90  Identities=20%  Similarity=0.233  Sum_probs=81.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHh-CCChhHhhhhhccCCCCCCCHH
Q psy2185          28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT-HPGLIQAYNARAQSTLFPASPL  106 (136)
Q Consensus        28 ~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~~~~t~l  106 (136)
                      .+..++++|+..|+...++.+.-.|.++..+|.+.+|+||+|+..|+.+++++|++. +.++       ..+|.+|+|||
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~-------~~kDRw~rtPl  577 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDP-------DPKDRWGRTPL  577 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCC-------ChhhccCCCcc
Confidence            455678999999999999999999999999999999999999999999999999986 4455       67889999999


Q ss_pred             HHHHHcCcHHHHHHHHhC
Q psy2185         107 HLASRNGHRFYLQQKVQS  124 (136)
Q Consensus       107 ~~A~~~g~~~~~~~Ll~~  124 (136)
                      .-|...+|.+++++|-+.
T Consensus       578 DdA~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  578 DDAKHFKHKEVVKLLEEA  595 (622)
T ss_pred             hHhHhcCcHHHHHHHHHH
Confidence            999999999999999764

>PF13606 Ank_3: Ankyrin repeat

Probab=99.17  E-value=5.7e-11  Score=51.70  Aligned_cols=29  Identities=41%  Similarity=0.597  Sum_probs=21.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy2185          28 DNETALHCAAQYGHTPVVSQLLEHSCDPT   56 (136)
Q Consensus        28 ~g~t~l~~a~~~g~~~~~~~ll~~~~~~~   56 (136)
                      +|+||||+||..|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            46777777777777777777777777664

>KOG0522|consensus

Probab=99.17  E-value=1.4e-10  Score=79.80  Aligned_cols=86  Identities=23%  Similarity=0.246  Sum_probs=61.6

Q ss_pred             hHHHHHHHcCCHHHHHHHH--hcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHH
Q psy2185          31 TALHCAAQYGHTPVVSQLL--EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHL  108 (136)
Q Consensus        31 t~l~~a~~~g~~~~~~~ll--~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~  108 (136)
                      -|+|+++.....+-++..+  +....++.+|..|.||||+|+..|+...++.|+..+++.       ..++..||+|||.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-------~~kN~~gWs~L~E   94 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-------SIKNNEGWSPLHE   94 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-------cccccccccHHHH
Confidence            3477777776665444322  334456677777888888888888888888888888777       6777788888888


Q ss_pred             HHHcCcHHHHHHHHh
Q psy2185         109 ASRNGHRFYLQQKVQ  123 (136)
Q Consensus       109 A~~~g~~~~~~~Ll~  123 (136)
                      |+..|+.+++..++.
T Consensus        95 Av~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   95 AVSTGNEQIITEVLR  109 (560)
T ss_pred             HHHcCCHHHHHHHHH
Confidence            888888777666654

>KOG0705|consensus

Probab=99.15  E-value=3.1e-10  Score=79.02  Aligned_cols=92  Identities=20%  Similarity=0.152  Sum_probs=78.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCC----CcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHH
Q psy2185          31 TALHCAAQYGHTPVVSQLLEHSCDP----TIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL  106 (136)
Q Consensus        31 t~l~~a~~~g~~~~~~~ll~~~~~~----~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l  106 (136)
                      ..|..|..-.+...+-.||.+|...    ...+.+|.|+||+||..|+..+.++|+=+|.+.       ...|.+|+|+|
T Consensus       626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-------~~rda~g~t~l  698 (749)
T KOG0705|consen  626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-------MARDAHGRTAL  698 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-------eecccCCchhh
Confidence            3456677777888888888887554    223567899999999999999999999999998       78899999999


Q ss_pred             HHHHHcCcHHHHHHHHhCCCCcc
Q psy2185         107 HLASRNGHRFYLQQKVQSDFCSS  129 (136)
Q Consensus       107 ~~A~~~g~~~~~~~Ll~~g~~~~  129 (136)
                      .+|.+.|..+|+.+|+++|+..+
T Consensus       699 ~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  699 FYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             hhHhhcccHHHHHHHHHcCCCcc
Confidence            99999999999999999998653

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.14  E-value=1.5e-10  Score=51.64  Aligned_cols=32  Identities=47%  Similarity=0.686  Sum_probs=26.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCccc
Q psy2185          28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRN   59 (136)
Q Consensus        28 ~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~   59 (136)
                      +|.||||+|+..|+.+++++|+++|++++.++
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            47888888888888888888888888887765

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0782|consensus

Probab=99.08  E-value=4.4e-10  Score=78.49  Aligned_cols=100  Identities=23%  Similarity=0.226  Sum_probs=87.5

Q ss_pred             hhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCC--CCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhh
Q psy2185          18 TEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCD--PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR   95 (136)
Q Consensus        18 ~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~   95 (136)
                      .|.++-.++...++.||+|+..|+-++|+|+++++..  ++..+..|+|.||-|+-.++..++++|++.|+.+       
T Consensus       888 ~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl-------  960 (1004)
T KOG0782|consen  888 NGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASL-------  960 (1004)
T ss_pred             cCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhh-------
Confidence            4556666777889999999999999999999999765  3566788999999999999999999999999998       


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2185          96 AQSTLFPASPLHLASRNGHRFYLQQKVQS  124 (136)
Q Consensus        96 ~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~  124 (136)
                      ...|..|.||-..|-+.|..++..+|-.+
T Consensus       961 ~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  961 RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            77888999999999999999999998764

>KOG0522|consensus

Probab=99.04  E-value=1.2e-09  Score=75.32  Aligned_cols=81  Identities=19%  Similarity=0.234  Sum_probs=69.6

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      +.+..+..+.++.+....++..|..|.||||.|+..|+.+.+..|+..++++..++..||+|||-|+..|+.+++..++.
T Consensus        30 ~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   30 TTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             ccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHH
Confidence            34444445555555667888899999999999999999999999999999999999999999999999999998887776


Q ss_pred             h
Q psy2185          84 T   84 (136)
Q Consensus        84 ~   84 (136)
                      +
T Consensus       110 ~  110 (560)
T KOG0522|consen  110 H  110 (560)
T ss_pred             H
Confidence            5

>KOG0506|consensus

Probab=99.03  E-value=2.2e-10  Score=78.13  Aligned_cols=82  Identities=30%  Similarity=0.316  Sum_probs=70.1

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCHHHHHHHcCCHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDT   80 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~   80 (136)
                      |+|.+-...++.+.. .|.+++..|....|+||.|+..|+.+++++|++. +.+++.+|.+|+|||.-|..++|.+++++
T Consensus       513 aa~~GD~~alrRf~l-~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~  591 (622)
T KOG0506|consen  513 AAKNGDLSALRRFAL-QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKL  591 (622)
T ss_pred             hhhcCCHHHHHHHHH-hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHH
Confidence            344444455555543 4678999999999999999999999999999965 89999999999999999999999999999


Q ss_pred             HHHh
Q psy2185          81 LVRT   84 (136)
Q Consensus        81 Ll~~   84 (136)
                      |-+.
T Consensus       592 L~~~  595 (622)
T KOG0506|consen  592 LEEA  595 (622)
T ss_pred             HHHH
Confidence            9875

>KOG0783|consensus

Probab=99.01  E-value=1.6e-10  Score=83.61  Aligned_cols=75  Identities=15%  Similarity=0.039  Sum_probs=67.6

Q ss_pred             CCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhcc
Q psy2185          55 PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRR  134 (136)
Q Consensus        55 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~  134 (136)
                      .+++|..|+++||+++..+..+++++|+.+|.++.      ......|+||||.|...|+.+++-.||.+|....++|+.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~------vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dke  118 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVF------VQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKE  118 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceee------eccccccchHhhHhhhhchHHHHHHHHhcCCceEEeccc
Confidence            47889999999999999999999999999999882      233347999999999999999999999999999999988


Q ss_pred             C
Q psy2185         135 F  135 (136)
Q Consensus       135 g  135 (136)
                      |
T Consensus       119 g  119 (1267)
T KOG0783|consen  119 G  119 (1267)
T ss_pred             C
Confidence            7

>KOG0782|consensus

Probab=99.00  E-value=1.5e-09  Score=75.94  Aligned_cols=98  Identities=17%  Similarity=0.095  Sum_probs=81.2

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHc
Q psy2185          33 LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN  112 (136)
Q Consensus        33 l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~  112 (136)
                      +..|+..+++--++.....|.++..++.+..+.||+|+.-|+.++|++++++++....     ...+..|.|+||.|+..
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~ell-----d~~de~get~lhkaa~~  944 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELL-----DMADETGETALHKAACQ  944 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHH-----HHHhhhhhHHHHHHHHh
Confidence            4556666665555555667888888888999999999999999999999999876533     34456799999999999


Q ss_pred             CcHHHHHHHHhCCCCcchhhccC
Q psy2185         113 GHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       113 g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++..+.++|++.|+.+.-.|.+|
T Consensus       945 ~~r~vc~~lvdagasl~ktd~kg  967 (1004)
T KOG0782|consen  945 RNRAVCQLLVDAGASLRKTDSKG  967 (1004)
T ss_pred             cchHHHHHHHhcchhheecccCC
Confidence            99999999999999998888877

>KOG3609|consensus

Probab=98.98  E-value=2e-09  Score=77.85  Aligned_cols=103  Identities=21%  Similarity=0.148  Sum_probs=83.9

Q ss_pred             hhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhH---hhhhhc
Q psy2185          20 DELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ---AYNARA   96 (136)
Q Consensus        20 ~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~---~~~~~~   96 (136)
                      .++|+.|.-|.+.++.|....+.+++++|++++...       ..+|.+|+..|..++++.++.+......   ......
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~  125 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANS  125 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhcccccchhccccccCc
Confidence            588899999999999999999999999999886543       5688899999999999999987443211   111223


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcc
Q psy2185          97 QSTLFPASPLHLASRNGHRFYLQQKVQSDFCSS  129 (136)
Q Consensus        97 ~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~  129 (136)
                      .....+.||+.+||..+++||+++|+++|+.+.
T Consensus       126 ~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  126 PHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             ccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence            455668899999999999999999999998864

>KOG2384|consensus

Probab=98.90  E-value=5.7e-09  Score=63.55  Aligned_cols=69  Identities=26%  Similarity=0.214  Sum_probs=63.8

Q ss_pred             hhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcC-CCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185          19 EDELLMLTKDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus        19 ~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      +.++|.+|..|||++++|+..|..+.+.||+..| +.+...|..+.+.+.+|-+.|..+++..|.+...+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e   71 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE   71 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence            3578999999999999999999999999999999 88899999999999999999999999999987544

>KOG0818|consensus

Probab=98.87  E-value=9.4e-09  Score=70.76  Aligned_cols=68  Identities=26%  Similarity=0.296  Sum_probs=60.6

Q ss_pred             hhhhhhhhhc-cCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHh
Q psy2185          17 ETEDELLMLT-KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT   84 (136)
Q Consensus        17 ~~~~~~~~~~-~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   84 (136)
                      .-|+++|..+ +.|.||||.|+..|+..=++.|.-+|++++..|..|.||+.+|...||.++.+-|++.
T Consensus       154 ~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  154 SLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             HcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHHH
Confidence            4577888766 4799999999999999999999999999999999999999999999999887666654

>KOG0705|consensus

Probab=98.81  E-value=2.3e-08  Score=70.02  Aligned_cols=63  Identities=32%  Similarity=0.297  Sum_probs=59.1

Q ss_pred             ccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCh
Q psy2185          26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL   88 (136)
Q Consensus        26 ~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~   88 (136)
                      +..|+|+||.||..|+..+.++|+=+|++...+|..|.|+|.||.+.|..+|+..|+.+|...
T Consensus       658 ~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  658 EGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             CCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            456899999999999999999999999999999999999999999999999999999997654

>KOG0521|consensus

Probab=98.79  E-value=8.7e-09  Score=75.72  Aligned_cols=89  Identities=19%  Similarity=0.123  Sum_probs=80.3

Q ss_pred             cCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHH
Q psy2185          27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPL  106 (136)
Q Consensus        27 ~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l  106 (136)
                      ..|+|+||.|+..+..-++++|++.|++++..+..|.+|+|.+...|+...+..+++.++++       ...+..|.+|+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-------~a~~~~~~~~l  726 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-------NAFDPDGKLPL  726 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccc-------cccCccCcchh
Confidence            47899999999999999999999999999999999999999999999999999999999998       77888999999


Q ss_pred             HHHHHcCcHHHHHHHH
Q psy2185         107 HLASRNGHRFYLQQKV  122 (136)
Q Consensus       107 ~~A~~~g~~~~~~~Ll  122 (136)
                      .+|....+.+++-++.
T Consensus       727 ~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  727 DIAMEAANADIVLLLR  742 (785)
T ss_pred             hHHhhhccccHHHHHh
Confidence            9998876666554443

>KOG0511|consensus

Probab=98.71  E-value=1.4e-07  Score=63.32  Aligned_cols=59  Identities=20%  Similarity=0.157  Sum_probs=54.9

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCh
Q psy2185          30 ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL   88 (136)
Q Consensus        30 ~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~   88 (136)
                      .--|..||+.|+.+.+++|++.|.++|..|....+||.+|+..||.+++++|+++|+.-
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            34578999999999999999999999999999999999999999999999999999754

>KOG0520|consensus

Probab=98.60  E-value=4.8e-08  Score=72.27  Aligned_cols=96  Identities=13%  Similarity=0.069  Sum_probs=68.6

Q ss_pred             ccCCchHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCHHHHHHHcCCHHHHHHHH-HhCCChhHhhhhhccCCCCCC
Q psy2185          26 TKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLV-RTHPGLIQAYNARAQSTLFPA  103 (136)
Q Consensus        26 ~~~g~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll-~~~~~~~~~~~~~~~~~~~~~  103 (136)
                      ...|.+.+|.++..+..-+++.+++- +.....-+.+|...+|+++..|. ++.-+++ -.+..+       ..+|..||
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~lg~-ewA~ll~~~~~~ai-------~i~D~~G~  642 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAALGY-EWAFLPISADGVAI-------DIRDRNGW  642 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhhcCC-ceeEEEEeeccccc-------ccccCCCC
Confidence            34678888999988888888888875 55555567777788888554444 4443333 344444       56788888


Q ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCcc
Q psy2185         104 SPLHLASRNGHRFYLQQKVQSDFCSS  129 (136)
Q Consensus       104 t~l~~A~~~g~~~~~~~Ll~~g~~~~  129 (136)
                      ||||+|+..|+..++..|+..|+++.
T Consensus       643 tpL~wAa~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  643 TPLHWAAFRGREKLVASLIELGADPG  668 (975)
T ss_pred             cccchHhhcCHHHHHHHHHHhccccc
Confidence            88888888888888888887777654

>KOG2384|consensus

Probab=98.55  E-value=3.5e-07  Score=55.97  Aligned_cols=67  Identities=21%  Similarity=0.176  Sum_probs=60.2

Q ss_pred             CCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhC-CChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q psy2185          52 SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH-PGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSD  125 (136)
Q Consensus        52 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g  125 (136)
                      +.+++.+|..|||+++.|+..|..+.+.+|+.+| +.+       ...+..+.+++.+|-+.|+.+++..|.+.-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~v-------gv~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFV-------GVTDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccc-------cccccccchHHHHHHhcChHHHHHHHHHHh
Confidence            3578899999999999999999999999999999 555       677889999999999999999999998753

>KOG0520|consensus

Probab=98.46  E-value=1.8e-07  Score=69.37  Aligned_cols=113  Identities=19%  Similarity=0.073  Sum_probs=82.8

Q ss_pred             HHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHH-hcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCh
Q psy2185          10 KSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL   88 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~   88 (136)
                      .+..++...+......|..|.-.+|. |..++.++.-++. -.|..++.+|..||||||+|+..|+..++..|.+.++..
T Consensus       589 Lie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~  667 (975)
T KOG0520|consen  589 LIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADP  667 (975)
T ss_pred             HHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhcccc
Confidence            33344332244445556667777787 5666666655444 458889999999999999999999999999999888776


Q ss_pred             hHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2185          89 IQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQS  124 (136)
Q Consensus        89 ~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~  124 (136)
                      . ...+.......|.|+..+|...|+..+.-+|-+.
T Consensus       668 ~-~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  668 G-AVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             c-cccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            4 2223355666799999999999998888777543

>KOG0511|consensus

Probab=98.39  E-value=1.4e-06  Score=58.61  Aligned_cols=59  Identities=27%  Similarity=0.252  Sum_probs=54.2

Q ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCc
Q psy2185          63 ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCS  128 (136)
Q Consensus        63 ~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~  128 (136)
                      ..-|..||+.|..+.++.|++.|.++       +..|.+..+||.+|+--||.+++++|+++|+--
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnV-------N~vD~fD~spL~lAsLcGHe~vvklLLenGAiC   95 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNV-------NAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC   95 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCc-------chhhcccccHHHHHHHcCcHHHHHHHHHcCCcc
Confidence            45678899999999999999999998       788999999999999999999999999999753

>smart00248 ANK ankyrin repeats

Probab=98.21  E-value=3.6e-06  Score=35.26  Aligned_cols=28  Identities=25%  Similarity=0.303  Sum_probs=23.7

Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhCCCCcc
Q psy2185         102 PASPLHLASRNGHRFYLQQKVQSDFCSS  129 (136)
Q Consensus       102 ~~t~l~~A~~~g~~~~~~~Ll~~g~~~~  129 (136)
                      +.||+|+|+..++.++++.|+++|.+++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            5789999999999999999998887764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0521|consensus

Probab=98.21  E-value=2e-06  Score=63.74  Aligned_cols=69  Identities=16%  Similarity=0.108  Sum_probs=64.1

Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          60 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        60 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..|.+++|.|+..+..-.+++|++.|++.       +..+..|+||+|.+...|+...+..|+.+|++++..+.+|
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~v-------n~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~  722 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADV-------NALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDG  722 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcc-------hhhhccCCCcchhhhhhcccchhhhhccccccccccCccC
Confidence            45789999999999999999999999997       7788899999999999999999999999999999888776

>smart00248 ANK ankyrin repeats

Probab=97.79  E-value=7.3e-05  Score=30.95  Aligned_cols=27  Identities=41%  Similarity=0.529  Sum_probs=17.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy2185          29 NETALHCAAQYGHTPVVSQLLEHSCDP   55 (136)
Q Consensus        29 g~t~l~~a~~~g~~~~~~~ll~~~~~~   55 (136)
                      |.||+|+|+..++.++++.+++.+.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666665543

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.71  E-value=0.00013  Score=51.09  Aligned_cols=62  Identities=16%  Similarity=0.121  Sum_probs=46.3

Q ss_pred             HHHHHHHHhcCCCCCc------ccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHH
Q psy2185          42 TPVVSQLLEHSCDPTI------RNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS  110 (136)
Q Consensus        42 ~~~~~~ll~~~~~~~~------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~  110 (136)
                      ...+++|.+++.+.+.      .+.--.|+||+|+..|..+++.++|+.++++       ..+|..|.||..++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-------~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-------STKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-------hhcccCCCCcccccc
Confidence            4566777777655532      2334567888888888888888888888887       778888888888876

>KOG2505|consensus

Probab=97.61  E-value=4.6e-05  Score=53.18  Aligned_cols=43  Identities=35%  Similarity=0.510  Sum_probs=40.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHH
Q psy2185          28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA   70 (136)
Q Consensus        28 ~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~   70 (136)
                      ...|+||+|+..|.-+++.+||+.|+++..+|..|.||..++.
T Consensus       429 ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  429 LTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             ccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3579999999999999999999999999999999999999887

>KOG3609|consensus

Probab=97.02  E-value=0.0013  Score=48.81  Aligned_cols=84  Identities=23%  Similarity=0.218  Sum_probs=70.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcC----CCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCC
Q psy2185          29 NETALHCAAQYGHTPVVSQLLEHS----CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPAS  104 (136)
Q Consensus        29 g~t~l~~a~~~g~~~~~~~ll~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t  104 (136)
                      +.--+..||..|+...|+..++..    .+++-.|.-|++++++|..+.+.+++++|++.....              ..
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------------gd   90 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------------GD   90 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------------ch
Confidence            344567899999999999888653    345667888999999999999999999999875443              47


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCC
Q psy2185         105 PLHLASRNGHRFYLQQKVQSDF  126 (136)
Q Consensus       105 ~l~~A~~~g~~~~~~~Ll~~g~  126 (136)
                      +|-+|...|..+++++++.+-.
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~  112 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFV  112 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhccc
Confidence            8999999999999999998643

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=96.21  E-value=0.043  Score=35.25  Aligned_cols=96  Identities=9%  Similarity=0.006  Sum_probs=61.4

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhc----CCCCCcccCCCCCHHHHHHH--cCCHHHHHHHHHhCCChhHhhhhhccCCCCC
Q psy2185          29 NETALHCAAQYGHTPVVSQLLEH----SCDPTIRNSRHETALDLAAQ--YGRLETVDTLVRTHPGLIQAYNARAQSTLFP  102 (136)
Q Consensus        29 g~t~l~~a~~~g~~~~~~~ll~~----~~~~~~~~~~g~t~l~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  102 (136)
                      -.+++.++...+..+++-+|+..    ..++-.. ..+.--+-++..  .....++++.+..|--..+.   .-.+-..|
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~-~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~---~F~~~NSG  254 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASM-EKELYDIEYLLSEHSASYKVLEYFINRGLVDVNK---KFQKVNSG  254 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhcceecchhhhc-CcchhhHHHHHhhcCCcHHHHHHHHhccccccch---hhhccCCc
Confidence            45677788877888888888854    1111000 112223444433  23466677777765332111   23455679


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhCCCCc
Q psy2185         103 ASPLHLASRNGHRFYLQQKVQSDFCS  128 (136)
Q Consensus       103 ~t~l~~A~~~g~~~~~~~Ll~~g~~~  128 (136)
                      .|-|.-|...++.+++.+||.+|+-.
T Consensus       255 dtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  255 DTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             chHHHhHHhcCcHHHHHHHHHcCccc
Confidence            99999999999999999999999843

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.24  E-value=0.071  Score=28.15  Aligned_cols=46  Identities=20%  Similarity=0.239  Sum_probs=29.3

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHh
Q psy2185          32 ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT   84 (136)
Q Consensus        32 ~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   84 (136)
                      .+..|+.+|+.++++..++.+       ......+..|+...+-+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-------~~~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-------KPDNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-------ccHHHHHHHHHHHhhHHHHHHHHHh
Confidence            456777777777777666432       1115567777777777777777664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=93.84  E-value=0.85  Score=28.51  Aligned_cols=25  Identities=12%  Similarity=0.065  Sum_probs=15.0

Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCcc
Q psy2185         105 PLHLASRNGHRFYLQQKVQSDFCSS  129 (136)
Q Consensus       105 ~l~~A~~~g~~~~~~~Ll~~g~~~~  129 (136)
                      -|..|+..|...-+--.+.+|.+++
T Consensus       146 hl~~a~~kgll~F~letlkygg~~~  170 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNVD  170 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCccc
Confidence            3556666666665555666666655

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.70  E-value=0.25  Score=26.03  Aligned_cols=51  Identities=12%  Similarity=0.128  Sum_probs=38.2

Q ss_pred             CHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhC-CCCc
Q psy2185          64 TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQS-DFCS  128 (136)
Q Consensus        64 t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~-g~~~  128 (136)
                      ..+..|...|+.++++..++.+...              ...+..|....+.+++++|++. ..++
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~--------------~~~l~~AI~~H~n~i~~~l~~~y~~~i   59 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD--------------NDCLEYAIKSHNNEIADWLIENYNLKI   59 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH--------------HHHHHHHHHHhhHHHHHHHHHhcCCCc
Confidence            4567888899999998888755332              2678889998888999998874 4443

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=92.58  E-value=0.45  Score=30.79  Aligned_cols=49  Identities=18%  Similarity=0.207  Sum_probs=39.4

Q ss_pred             CCHHHHHHHHhcC-CCCCcc---cCCCCCHHHHHHHcCCHHHHHHHHHhCCCh
Q psy2185          40 GHTPVVSQLLEHS-CDPTIR---NSRHETALDLAAQYGRLETVDTLVRTHPGL   88 (136)
Q Consensus        40 g~~~~~~~ll~~~-~~~~~~---~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~   88 (136)
                      .+..+++++++.| ++++.+   ...|.|.|.-|.+++..+++..|+++|+..
T Consensus       228 a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  228 ASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             CcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            3567888888876 445543   457999999999999999999999999854

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=87.60  E-value=1.8  Score=27.11  Aligned_cols=82  Identities=18%  Similarity=0.107  Sum_probs=56.3

Q ss_pred             CchHHHHHHHcCCHHHHH---H-HHhcCCCCCcccCC--CCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCC
Q psy2185          29 NETALHCAAQYGHTPVVS---Q-LLEHSCDPTIRNSR--HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFP  102 (136)
Q Consensus        29 g~t~l~~a~~~g~~~~~~---~-ll~~~~~~~~~~~~--g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  102 (136)
                      -.+.+-+|....+.++..   . +.++.....-.|..  -..-|..|+..|-.+.+-..+++|.+..       .     
T Consensus       104 ~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~-------~-----  171 (192)
T PF03158_consen  104 PEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD-------I-----  171 (192)
T ss_pred             chhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc-------H-----
Confidence            345677888888877654   2 33432222111110  0124678899999999999999999883       3     


Q ss_pred             CCHHHHHHHcCcHHHHHHHHh
Q psy2185         103 ASPLHLASRNGHRFYLQQKVQ  123 (136)
Q Consensus       103 ~t~l~~A~~~g~~~~~~~Ll~  123 (136)
                       +.|..|+..+|..+..+++.
T Consensus       172 -~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  172 -IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             -HHHHHHHHhhHHHHHHHhhc
Confidence             78999999999999988874

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-10
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-08
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		5e-08
2xee_A	157	Structural Determinants For Improved Thermal Stabil		6e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-08
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		8e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		9e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		8e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-06
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-06
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-06
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		4e-06
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		8e-06
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-05
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-05
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-05
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		3e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		4e-05
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-05
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-05
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		2e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		2e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-04
3ljn_A	364	Ankyrin Repeat Protein From Leishmania Major Length		8e-04

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 7/92 (7%)
Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           D +T LH AA+ GH  VV  LL    DP  ++S  +T L LAA+ G  E V  L      
Sbjct: 36  DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL------ 89
Query: 88  LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           L Q  +  A+ +    +PLHLA+ NGH+  ++
Sbjct: 90  LSQGADPNAKDS-DGKTPLHLAAENGHKEVVK 120

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 7/87 (8%)
Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           KD++T LHCAA+ GHT +V  LLE++ +P +  +   T L +AA+ G +ETV  L+    
Sbjct: 78  KDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-- 135
Query: 87  GLIQAYNARAQSTLFPASPLHLASRNG 113
              +A  A      F  +PLH+A++ G
Sbjct: 136 ---EASQACMTKKGF--TPLHVAAKYG 157

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           K+  T LH AA+ GH  VV  LLE   D   ++    T L LAA+ G LE V  L+    
Sbjct: 33  KNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
            +    NA+ ++     +PLHLA+RNGH
Sbjct: 93  DV----NAKDKNG---RTPLHLAARNGH 113

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 29  NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 88
            +T LH AA  GH  +V  LL+H  D    +   +T L LAA YG LE V+ L++     
Sbjct: 47  GKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLK----- 101
Query: 89  IQAYNARAQSTLFPASPLHLASRNGH 114
               +  A  T +  +PLHLA+  GH
Sbjct: 102 -NGADVNATDT-YGFTPLHLAADAGH 125

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA  GH  +V  LL+H  D   R++   T L LAA  G LE V+ L++       
Sbjct: 49  TPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLK------Y 102
Query: 91  AYNARAQSTLFPASPLHLASRNGH 114
             +  AQ   +  +PLHLA+  GH
Sbjct: 103 GADVNAQDA-YGLTPLHLAADRGH 125

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           KD  T LH AA+ GH  +V  LL+   D   ++    T L LAA+ G LE V+ L++   
Sbjct: 33  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
            +    NA+ +      +PLHLA+R GH
Sbjct: 93  DV----NAKDKDGY---TPLHLAAREGH 113

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           KD  T LH AA+ GH  +V  LL+   D   ++    T L LAA+ G LE V+ L++   
Sbjct: 33  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
            +    NA+ +      +PLHLA+R GH
Sbjct: 93  DV----NAKDKDGY---TPLHLAAREGH 113

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 47/88 (53%), Gaps = 7/88 (7%)
Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           KD  T LH AA+ GH  +V  LL+   D   ++    T L LAA+ G LE V+ L++   
Sbjct: 45  KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
            +    NA+ +      +PLHLA+R GH
Sbjct: 105 DV----NAKDKDGY---TPLHLAAREGH 125

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA +GH  +V  LL++  D    ++   T L LAA +G LE V+ L++    +  
Sbjct: 49  TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADV-- 106
Query: 91  AYNARAQSTLFPASPLHLASRNGH 114
             NA+  + +   +PLHLA+  GH
Sbjct: 107 --NAKDDNGI---TPLHLAANRGH 125

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA YGH  +V  LL+H  D    +    T L LAA  G LE V+ L++ H   + 
Sbjct: 49  TPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLK-HGADVN 107
Query: 91  AYNARAQSTLFPASPLHLASRNGH 114
           A +       +  +PLHLA+  GH
Sbjct: 108 AVDT------WGDTPLHLAAIMGH 125

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA YGH  +V  LL+H  D    +    T L LAA  G LE V+ L++ H   + 
Sbjct: 49  TPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLK-HGADVN 107
Query: 91  AYNARAQSTLFPASPLHLASRNGH 114
           A +       +  +PLHLA+  GH
Sbjct: 108 AVDT------WGDTPLHLAAIMGH 125

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 7/87 (8%)
Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           +  T LH AA+ GH  VV  LLE   D   ++    T L LAA+ G LE V  L+     
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 88  LIQAYNARAQSTLFPASPLHLASRNGH 114
           +    NA+ ++     +PLHLA+RNGH
Sbjct: 61  V----NAKDKNG---RTPLHLAARNGH 80

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA +GH  +V  LL++  D   ++S   T L LAA+ G LE V+ L++    +  
Sbjct: 49  TPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADV-- 106
Query: 91  AYNARAQSTLFPASPLHLASRNGH 114
             NA + S  F  +PLHLA++ GH
Sbjct: 107 --NA-SDSHGF--TPLHLAAKRGH 125

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           D  T LH AA  GH  +V  LL++  D    +    T L LAA  G LE V+ L++ H  
Sbjct: 46  DGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLK-HGA 104
Query: 88  LIQAYNARAQSTLFPASPLHLASRNGH 114
            + AY+          +PLHLA++ GH
Sbjct: 105 DVNAYDNDGH------TPLHLAAKYGH 125

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 29  NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL 88
            +T LH AA+ GH  +V  LL++  D    +    T L LAA+ G LE V+ L++     
Sbjct: 47  GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLK----- 101
Query: 89  IQAYNARAQSTLFPASPLHLASRNGH 114
               +  A  T+  ++PLHLA+  GH
Sbjct: 102 -YGADVNADDTI-GSTPLHLAADTGH 125

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           KD  T LH AA+ GH   V +LL    D   R+    T L LAA+ G  E V  L+    
Sbjct: 7   KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
            +    NAR++      +P HLA +NGH   ++
Sbjct: 67  DV----NARSKDG---NTPEHLAKKNGHHEIVK 92

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           D  T LH AA+ GH  +V  LL    DP  ++S   T L  AA+ G  E V  L      
Sbjct: 36  DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL------ 89
Query: 88  LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
           L +  +  A+ +    +PLH A+ NGH+  ++
Sbjct: 90  LSKGADPNAKDS-DGRTPLHYAAENGHKEIVK 120

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA +GH  +V  LL++  D    +S   T L LAA  G LE V+ L++    +  
Sbjct: 49  TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADV-- 106
Query: 91  AYNARAQSTLFPASPLHLASRNGH 114
             NA   +     +PLHLA+  GH
Sbjct: 107 --NANDHNGF---TPLHLAANIGH 125

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA  GH  +V  LL+H  D    +    T L LAA  G LE V+ L++       
Sbjct: 49  TPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK------- 101
Query: 91  AYNARAQS-TLFPASPLHLASRNGH 114
            Y A   +  +  ++PLHLA+  GH
Sbjct: 102 -YGADVNAFDMTGSTPLHLAADEGH 125

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 7/84 (8%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA+ GH  +V  LL++  D    ++   T L LAA  G LE V+ L++ H   + 
Sbjct: 49  TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLK-HGADVN 107
Query: 91  AYNARAQSTLFPASPLHLASRNGH 114
           A +          +PLHLA+ +GH
Sbjct: 108 AKDYEG------FTPLHLAAYDGH 125

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA  GH  +V  LL+H  D    +    T L LAA +G LE V+ L++    +  
Sbjct: 49  TPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV-- 106
Query: 91  AYNARAQSTLFPASPLHLASRNGH 114
             NA     +   +PLHLA++ G+
Sbjct: 107 --NAMDSDGM---TPLHLAAKWGY 125

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 7/85 (8%)
Query: 30  ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI 89
           ET LH A+  G  P V  LL++  DP +++    T L  A  +G L+ V+ L++ H  L+
Sbjct: 11  ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ-HKALV 69
Query: 90  QAYNARAQSTLFPASPLHLASRNGH 114
                +        SPLH A++NGH
Sbjct: 70  NTTGYQND------SPLHDAAKNGH 88

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH     GH  ++  LL+++ D    +    T L LAA  G LE V+ L++       
Sbjct: 49  TPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLK------- 101
Query: 91  AYNARAQSTLFPA-SPLHLASRNGH 114
            Y A   +  +   +PLHLA+ +GH
Sbjct: 102 -YGADVNAMDYQGYTPLHLAAEDGH 125

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           T LH AA Y H  +V  LL+H  D    ++   T L LAA +G LE V+ L++
Sbjct: 49  TPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK 101

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA  G   +V  LL++  D    +S   T L LAA  G LE V+ L++ H   + 
Sbjct: 41  TPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLK-HGADVN 99
Query: 91  AYNARAQSTLFPASPLHLASRNG 113
           AY+ RA  T     PLHLA+ +G
Sbjct: 100 AYD-RAGWT-----PLHLAALSG 116

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA  GH  +V  LL +  D    ++   T L LAA  G LE V+ L++    +  
Sbjct: 37  TPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADV-- 94
Query: 91  AYNARAQSTLFPASPLHLASRNGH 114
             NA+  + +   +PL+LA+  GH
Sbjct: 95  --NAKDATGI---TPLYLAAYWGH 113

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           T LH AA+ GH  +V  LL+H  D   R+    T L LAA  G LE V+ L+ 
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH AA  GH  +V  LL++  D    +    T L LAA +G LE V+ L++     + 
Sbjct: 49  TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VN 107
Query: 91  AYNARAQSTLFPASPLHLASRNGH 114
           A +          +PLHLA+  GH
Sbjct: 108 ANDMEGH------TPLHLAAMFGH 125

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           T LH AA+ GH  +V  LL+H  D    +S   T L LAA  G LE V+ L+ 
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           D  T LH AA+ GH  VV  L+    D   ++S   T L  AA+ G  E V  L+ +   
Sbjct: 36  DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-SKGA 94
Query: 88  LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
            + A ++  +      +PLH A+ NGH+  ++
Sbjct: 95  DVNAKDSDGR------TPLHHAAENGHKEVVK 120

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           D  T LH AA+ GH  +V  L+    D   ++S   T L  AA+ G  E V  L+ +   
Sbjct: 36  DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI-SKGA 94
Query: 88  LIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
            + A ++  +      +PLH A++ GH+  ++
Sbjct: 95  DVNAKDSDGR------TPLHYAAKEGHKEIVK 120

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 32/57 (56%)
Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           +D  T LH AAQ GH  +V  LL++  D    ++   T L LAA  G LE V+ L++
Sbjct: 45  EDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 28/53 (52%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           T LH AA+ GH  +V  LL+H  D    +    T L LAA  G LE V+ L+ 
Sbjct: 49  TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           T LH AA   H  +V  LL++  D    ++  ET L L A YG LE V+ L++
Sbjct: 49  TPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLK 101

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 29  NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
           N T LH A + GH  +V QL+++  DP++ +    + + LAAQ+G    V  L+
Sbjct: 76  NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129

>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major Length = 364

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 9/82 (10%)
Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           +N   +H AA+ G T  V +L+E    PTI+N    TAL LA ++G ++T   L      
Sbjct: 19  ENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL------ 72
Query: 88  LIQAYNARAQSTLFPASPLHLA 109
              A      S      P+HLA
Sbjct: 73  ---ASVGEVHSLWHGQKPIHLA 91

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	9e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-08
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	9e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-17
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-17
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-14
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-04
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-15
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-15
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	8e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-16
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-15
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	6e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-04
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-16
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-14
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-15
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-06
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-14
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-15
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-12
2rfa_A	232	Transient receptor potential cation channel subfa	2e-14
2rfa_A	232	Transient receptor potential cation channel subfa	1e-13
2rfa_A	232	Transient receptor potential cation channel subfa	1e-13
2rfa_A	232	Transient receptor potential cation channel subfa	3e-09
2rfa_A	232	Transient receptor potential cation channel subfa	6e-09
2rfa_A	232	Transient receptor potential cation channel subfa	9e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-14
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-08
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-04
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-13
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-11
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-05
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-04
2etb_A	256	Transient receptor potential cation channel subfam	2e-12
2etb_A	256	Transient receptor potential cation channel subfam	3e-11
2etb_A	256	Transient receptor potential cation channel subfam	4e-11
2etb_A	256	Transient receptor potential cation channel subfam	2e-10
2etb_A	256	Transient receptor potential cation channel subfam	9e-07
2etb_A	256	Transient receptor potential cation channel subfam	1e-04
2pnn_A	273	Transient receptor potential cation channel subfa	5e-12
2pnn_A	273	Transient receptor potential cation channel subfa	4e-11
2pnn_A	273	Transient receptor potential cation channel subfa	6e-11
2pnn_A	273	Transient receptor potential cation channel subfa	3e-09
2pnn_A	273	Transient receptor potential cation channel subfa	2e-07
2pnn_A	273	Transient receptor potential cation channel subfa	6e-06
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	5e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-10
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	6e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	4e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-08
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-10
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.0 bits (193), Expect = 2e-18
 Identities = 22/89 (24%), Positives = 32/89 (35%), Gaps = 6/89 (6%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
             +NE  LH AA    T +V  LL    D +  + +  TAL  A   G ++TV   V+  
Sbjct: 59  LLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK-K 117

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              +  Y      T       + A     
Sbjct: 118 NWRLMFYGKTGWKT-----SFYHAVMLND 141

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 13/89 (14%), Positives = 28/89 (31%), Gaps = 9/89 (10%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
                +A + A    +  +V  LL       +  +     L  AA     + V  L+   
Sbjct: 28  DVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENE--FPLHQAATLEDTKIVKILL-FS 84

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
                 ++ +        + L+ A  +G+
Sbjct: 85  GLDDSQFDDKGN------TALYYAVDSGN 107

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 63.7 bits (156), Expect = 3e-13
 Identities = 12/90 (13%), Positives = 22/90 (24%), Gaps = 15/90 (16%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET-ALDLAAQYGRLETVDTLVRT 84
                + +H   + GH  ++  LL++       NS      + LA     +E +  L   
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF-- 215

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                              S          
Sbjct: 216 --------KYDIN----IYSANLENVLLDD 233

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 61.8 bits (151), Expect = 1e-12
 Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 10/91 (10%)

Query: 27  KDN---ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
                 +T+ + A       +VS  L              + + +  + G ++ +  L+ 
Sbjct: 124 YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAIL-LSCIHITIKNGHVDMMILLL- 181

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGH 114
            +       N        P   + LA  N  
Sbjct: 182 DYMTST---NTNNSLLFIPD--IKLAIDNKD 207

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 4/58 (6%), Positives = 13/58 (22%), Gaps = 8/58 (13%)

Query: 26  TKDNET-ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
                   +  A       ++  L ++  +         +A          E    ++
Sbjct: 191 NSLLFIPDIKLAIDNKDIEMLQALFKYDINI-------YSANLENVLLDDAEIAKMII 241

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.2 bits (108), Expect = 9e-07
 Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 10/79 (12%)

Query: 36  AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 95
                 +  +   L  S D    +    +A   A     +  V TL+     L       
Sbjct: 6   RINTWKSKQLKSFL-SSKDTFKADVHGHSASYYAIADNNVRLVCTLL-NAGALKNLLENE 63

Query: 96  AQSTLFPASPLHLASRNGH 114
                    PLH A+    
Sbjct: 64  --------FPLHQAATLED 74

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 5/52 (9%), Positives = 15/52 (28%), Gaps = 2/52 (3%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 79
           +  +A           +   ++E   +    +  +   LD+       E + 
Sbjct: 220 NIYSANLENVLLDDAEIAKMIIEKHVEYKSDS--YTKDLDIVKNNKLDEIIS 269

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 75.9 bits (188), Expect = 5e-18
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
             +   +  A QYG      +L+E   D    +  + T L  AA   R++ V   + +  
Sbjct: 7   DYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYI-SKG 65

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
            ++        ST     PLH A+R GH
Sbjct: 66  AIVDQLGGDLNST-----PLHWATRQGH 88

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 69.8 bits (172), Expect = 9e-16
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 10/92 (10%)

Query: 27  KDNE---TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
              +   T LH A + GH  +V QL+++  DP++ +    + + LAAQ+G    V  L+ 
Sbjct: 71  LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI- 129

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
                +   +          +PL  A+   H 
Sbjct: 130 AKGQDVDMMDQNGM------TPLMWAAYRTHS 155

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 65.9 bits (162), Expect = 2e-14
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 7/90 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG-RLETVDTLVRT 84
             +  + +H AAQ+GHT +V+ L+    D  + +    T L  AA     ++    L+ T
Sbjct: 106 DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLL-T 164

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
               +   +   ++T      LH A   G+
Sbjct: 165 FNVSVNLGDKYHKNT-----ALHWAVLAGN 189

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 65.9 bits (162), Expect = 3e-14
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 27  KDN---ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            D     TALH A   G+T V+S LLE   +   +N + E+ALDLA Q   +  ++ L 
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQ 230

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 65.1 bits (160), Expect = 6e-14
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRT 84
            K+N T LH AA      +V   +               T L  A + G L  V  L++ 
Sbjct: 39  DKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK- 97

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
           +       +          S +HLA++ GH
Sbjct: 98  YGADPSLIDGEGC------SCIHLAAQFGH 121

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 63.6 bits (156), Expect = 2e-13
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 13/93 (13%)

Query: 26  TKDNETALHCAAQYGHTP-VVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVR 83
            ++  T L  AA   H+      LL  +    + +  H  TAL  A   G    +  L+ 
Sbjct: 139 DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLE 198

Query: 84  THPGLIQAYNARAQS--TLFPASPLHLASRNGH 114
               +    +A+     +      L LA +  +
Sbjct: 199 AGANV----DAQNIKGES-----ALDLAKQRKN 222

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH 51
               E+AL  A Q  +  +++ L E 
Sbjct: 207 NIKGESALDLAKQRKNVWMINHLQEA 232

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 77.2 bits (191), Expect = 6e-18
 Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 9/89 (10%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
             +N   +H AA+ G T  V +L+E    PTI+N    TAL LA ++G ++T   L    
Sbjct: 17  DDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLAS-V 75

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
             +   ++ +         P+HLA     
Sbjct: 76  GEVHSLWHGQ--------KPIHLAVMANK 96

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 75.7 bits (187), Expect = 2e-17
 Identities = 12/96 (12%), Positives = 27/96 (28%), Gaps = 8/96 (8%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            K   + LH A       V  + +E   D  + ++ H   L L+ +   +     L+   
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELL-QK 266

Query: 86  PGLIQAYNARAQS-------TLFPASPLHLASRNGH 114
             +         +        +     +  A+    
Sbjct: 267 TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 10/94 (10%)

Query: 26  TKDNETALHCAAQYG--HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
               +TALH     G  +  ++  L++    PT ++   ET L  A ++   E +D ++ 
Sbjct: 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMD 194

Query: 84  THPGLIQAY-NARAQS--TLFPASPLHLASRNGH 114
           T P       +   +   +      LH A     
Sbjct: 195 TVPSKSSLRLDYANKQGNS-----HLHWAILINW 223

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 65.7 bits (161), Expect = 7e-14
 Identities = 8/102 (7%), Positives = 24/102 (23%), Gaps = 20/102 (19%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE-------------TALDLAAQY 72
             ++   L+ + +     +  +LL+ +    I+   +                +  AA  
Sbjct: 241 DNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300

Query: 73  GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
            + E +  L       +                     +   
Sbjct: 301 SKQEVLQLLQ-EKLDEVVRSLNTGA------GGAVKRKKKAA 335

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.4 bits (150), Expect = 3e-12
 Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 12/94 (12%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLE-----HSCDPTIRNSRHETALDLAAQYGRLETVDT 80
            K +ET L  A ++ +   +  +++      S      N +  + L  A      +    
Sbjct: 170 DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229

Query: 81  LVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
            V      +   +           PL+L+ R   
Sbjct: 230 FV-EMGIDVNMEDNEHT------VPLYLSVRAAM 256

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 23/91 (25%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
               +  +H A     T +V  L+E +        R +    L  +    E  +      
Sbjct: 81  LWHGQKPIHLAVMANKTDLVVALVEGA------KERGQMPESLLNECDEREVNEIGS--- 131

Query: 86  PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
                  + +     T      LH     G 
Sbjct: 132 -------HVKHCKGQT-----ALHWCVGLGP 150

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 3e-11
 Identities = 6/60 (10%), Positives = 12/60 (20%)

Query: 23  LMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
           L         +  AA      V+  L E   +     +          +          +
Sbjct: 284 LPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKL 343

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 4/44 (9%), Positives = 9/44 (20%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLA 69
                       +     V    L  S     R+     +  ++
Sbjct: 320 LNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 72.8 bits (180), Expect = 1e-17
 Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 11/90 (12%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
              ET LH A+  G  P V  LL++  DP +++    T L  A  +G L+ V+ L+  H 
Sbjct: 8   HRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL-QHK 66

Query: 87  GLIQAYNARAQ--STLFPASPLHLASRNGH 114
            L+   N       +     PLH A++NGH
Sbjct: 67  ALV---NTTGYQNDS-----PLHDAAKNGH 88

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 65.1 bits (160), Expect = 9e-15
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 9/91 (9%)

Query: 27  KDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
           KD+   T LH A  +GH  VV  LL+H         ++++ L  AA+ G ++ V  L+  
Sbjct: 39  KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLS- 97

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
           +     A N           P+        +
Sbjct: 98  YGASRNAVNIFGL------RPVDYTDDESMK 122

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 64.8 bits (159), Expect = 1e-14
 Identities = 12/57 (21%), Positives = 20/57 (35%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
             N++ LH AA+ GH  +V  LL +       N      +D          +    +
Sbjct: 74  YQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 23/65 (35%)

Query: 58  RNSRHETALDLAAQYGRLETVDTL--------VRTHPGLIQAYNARAQSTLFPASPLHLA 109
            N R ET L +A+  G + +V+ L        V+ H G                +PLH A
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGW---------------TPLHEA 50

Query: 110 SRNGH 114
             +GH
Sbjct: 51  CNHGH 55

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 75.2 bits (186), Expect = 2e-17
 Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           T D+ + LH A   GH   V  LL+H        +   T L  A   G  + V+ L+   
Sbjct: 89  TADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL--- 145

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
                 + A  Q     ASP+H A+R GH
Sbjct: 146 -----QHGASVQPESDLASPIHEAARRGH 169

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 72.1 bits (178), Expect = 3e-16
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
             D  + +H AA+ GH   V+ L+ +  +   + S   T L LA +  +   V  L+   
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE-- 211

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
                   A         SPLH   R   
Sbjct: 212 ------SGADVNQGKGQDSPLHAVVRTAS 234

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 68.7 bits (169), Expect = 4e-15
 Identities = 21/92 (22%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
              + + +H AA +GH   +  L+       I  + H + L  A   G L  V  L+   
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL--- 112

Query: 86  PGLIQAYNARAQ---STLFPASPLHLASRNGH 114
                     AQ    T    +PL  A  +G 
Sbjct: 113 -------KHGAQVNGVTADWHTPLFNACVSGS 137

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 67.5 bits (166), Expect = 1e-14
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 8/89 (8%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
                T L+ A +      V +LLE   D        ++ L    +    E    L+   
Sbjct: 187 ISHLGTPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLM-DF 244

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
               QA NA  +       P+ L      
Sbjct: 245 GADTQAKNAEGK------RPVELVPPESP 267

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.8 bits (146), Expect = 6e-12
 Identities = 8/52 (15%), Positives = 20/52 (38%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 78
           K  ++ LH   +     +   L++   D   +N+  +  ++L      L  +
Sbjct: 220 KGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL 271

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.7 bits (112), Expect = 3e-07
 Identities = 16/89 (17%), Positives = 25/89 (28%), Gaps = 14/89 (15%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
             D           G       LL +       +    + +  AA +G   ++  L+   
Sbjct: 30  GMDGSKPAGPRDFPGIR-----LLSNPLMGDAVSDW--SPMHEAAIHGHQLSLRNLIS-Q 81

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              +    A         SPLH A   GH
Sbjct: 82  GWAVNIITADHV------SPLHEACLGGH 104

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 46.3 bits (111), Expect = 4e-07
 Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 36  AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 95
            + + H    S L+         + + +  +D +   G  +     + ++P +  A +  
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGK-QGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDW 60

Query: 96  AQSTLFPASPLHLASRNGH 114
                   SP+H A+ +GH
Sbjct: 61  --------SPMHEAAIHGH 71

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 73.7 bits (182), Expect = 3e-17
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR--T 84
              +T LH A       +   LL   CDP +R+ R  T L LA + G L +V  L +  T
Sbjct: 43  NLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCT 102

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
            P L     A   +     + LHLAS +G+
Sbjct: 103 TPHLHSILKATNYNGH---TCLHLASIHGY 129

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 64.1 bits (157), Expect = 1e-13
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 11/93 (11%)

Query: 26  TKDNETALHCAAQYGHTP----VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
           T+D ++ LH A  +        V+ Q+         +N+  +T L LA    + E  + L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

Query: 82  VRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
           +       +  + R        +PLHLA   G 
Sbjct: 65  LG-AGCDPELRDFRGN------TPLHLACEQGC 90

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 63.7 bits (156), Expect = 2e-13
 Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTI------RNSRHETALDLAAQYGRLETVD 79
                T LH A + G    V  L +    P +       N    T L LA+ +G L  V+
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVE 134

Query: 80  TLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
            LV          +  AQ      + LHLA    + 
Sbjct: 135 LLVS------LGADVNAQEPCNGRTALHLAVDLQNP 164

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 63.0 bits (154), Expect = 3e-13
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRT 84
             +  T LH A+ +G+  +V  L+    D   +   +  TAL LA      + V  L++ 
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173

Query: 85  HPGL-IQAYNARAQSTLFPASPLHLASRNGH 114
              +    Y           SP  L      
Sbjct: 174 GADVNRVTYQGY--------SPYQLTWGRPS 196

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 58.7 bits (143), Expect = 1e-11
 Identities = 12/56 (21%), Positives = 18/56 (32%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            +  TALH A    +  +VS LL+   D      +  +   L            L 
Sbjct: 149 CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG 204

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 6/54 (11%), Positives = 13/54 (24%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 79
           T    +          T +  QL + + +        E       +    E  +
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFTE 234

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 73.4 bits (181), Expect = 4e-17
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 7/88 (7%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           K  +TALH AA  G+  +V  LL       +RN   + A D+A        +        
Sbjct: 138 KLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQ-GTD 196

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
            +    NA              +    H
Sbjct: 197 AVRTLSNAEDY------LDDEDSDLEHH 218

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            +  +  LH AA+ G+   + + L++       +    TAL  A   G  + V+ L  T 
Sbjct: 70  AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLF-TQ 128

Query: 86  PG-LIQAYNARAQSTLFPASPLHLASRNGH 114
           P   +   N          + LH A+  G+
Sbjct: 129 PNIELNQQNKLGD------TALHAAAWKGY 152

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 63.8 bits (156), Expect = 1e-13
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
            K   TAL+ A   GH  +V  L      +   +N   +TAL  AA  G  + V  L+  
Sbjct: 103 DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK 162

Query: 85  HPGLIQAYNARAQ--STLFPASPLHLASRNGHR 115
                   + R              +A+     
Sbjct: 163 GART----DLRNIEKKL-----AFDMATNAACA 186

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 12/89 (13%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            K  +  +  A          +L     D        +T        GR   +       
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI------- 61

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
           P    A  A +        PLH A++ G+
Sbjct: 62  PSNYVAEQAESIDN-----PLHEAAKRGN 85

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 56.1 bits (136), Expect = 9e-11
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 19/115 (16%)

Query: 7   LKRKSRDMETETEDELL-------MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
           + R     E  T DEL         +T  ++T        G T ++              
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQA----- 70

Query: 60  SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
              +  L  AA+ G L  +   +  +   +   + +A ST      L+ A   GH
Sbjct: 71  ESIDNPLHEAAKRGNLSWLRECLD-NRVGVNGLD-KAGST-----ALYWACHGGH 118

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 4/49 (8%), Positives = 13/49 (26%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRL 75
            + + A   A       ++ +        T+ N+      + +      
Sbjct: 171 IEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHH 219

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.5 bits (174), Expect = 5e-17
 Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           +KD  T LH AA+ GH   V +LL    D   R+    T L LAA+ G  E V  L+   
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL-AK 64

Query: 86  PGLIQAYNARAQ--STLFPASPLHLASRNGH 114
              +   NAR++  +T     P HLA +NGH
Sbjct: 65  GADV---NARSKDGNT-----PEHLAKKNGH 87

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 61.6 bits (151), Expect = 1e-13
 Identities = 21/56 (37%), Positives = 25/56 (44%)

Query: 27 KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
          KD  T LH AA+ GH  +V  LL    D   R+    T   LA + G  E V  L 
Sbjct: 40 KDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 47.4 bits (114), Expect = 4e-08
 Identities = 11/41 (26%), Positives = 15/41 (36%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 66
           +KD  T  H A + GH  +V  L     D   R+       
Sbjct: 72  SKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 71.7 bits (177), Expect = 6e-17
 Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 17/93 (18%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           ++  T L  AA +G   VV  LL++  DP +     E+AL LA   G  + V  L     
Sbjct: 34  EEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML----- 88

Query: 87  GLIQA---YNARAQ--STLFPASPLHLASRNGH 114
             +      N       T     PL  A    H
Sbjct: 89  --LDCGVDVNEYDWNGGT-----PLLYAVHGNH 114

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 70.1 bits (173), Expect = 2e-16
 Identities = 17/92 (18%), Positives = 31/92 (33%), Gaps = 17/92 (18%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
            N  ++H  A  G    ++  +E        +    T L  AA +G++  V+ L      
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL------ 55

Query: 88  LIQA---YNARAQ--STLFPASPLHLASRNGH 114
            +Q         +   +      L LA   G+
Sbjct: 56  -LQNGADPQLLGKGRES-----ALSLACSKGY 81

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 69.0 bits (170), Expect = 7e-16
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 23/97 (23%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
            K  E+AL  A   G+T +V  LL+   D    +    T L  A     ++ V  L+   
Sbjct: 66  GKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG 125

Query: 83  -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                 T  G                  + LA   G+
Sbjct: 126 ADPTIETDSG----------YN-----SMDLAVALGY 147

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 63.9 bits (157), Expect = 6e-14
 Identities = 16/57 (28%), Positives = 20/57 (35%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
             +  T L  A    H   V  LLE   DPTI       ++DLA   G       + 
Sbjct: 99  DWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.0 bits (100), Expect = 7e-06
 Identities = 5/29 (17%), Positives = 9/29 (31%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCD 54
           T     ++  A   G+  V   +  H   
Sbjct: 132 TDSGYNSMDLAVALGYRSVQQVIESHLLK 160

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.5 bits (184), Expect = 6e-17
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
             +  T LH AA+     V   LL++       + +  T L LAAQ G  E V  L+   
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
                  N   +S L   +PLHL ++ GH
Sbjct: 269 ANG----NLGNKSGL---TPLHLVAQEGH 290

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.5 bits (184), Expect = 8e-17
 Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 11/91 (12%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            +   T LH A+  GH P+V  LL+    P + N + ET L +AA+ G  E    L++  
Sbjct: 11  GESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNK 70

Query: 86  PGLIQAYNARAQ--STLFPASPLHLASRNGH 114
             +    NA+A+   T     PLH A+R GH
Sbjct: 71  AKV----NAKAKDDQT-----PLHCAARIGH 92

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.1 bits (183), Expect = 1e-16
 Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 11/91 (12%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           +    T LH AAQ GH  +V+ LL    +  + N    T L L AQ G +   D L++  
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301

Query: 86  PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
             +    +A  +   T     PLH+AS  G+
Sbjct: 302 VMV----DATTRMGYT-----PLHVASHYGN 323

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.7 bits (182), Expect = 2e-16
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           T+   T LH A+ YG+  +V  LL+H  D   +     + L  AAQ G  + V  L++  
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367

Query: 86  PGLIQAYNARAQ--STLFPASPLHLASRNGH 114
                  N  +   +T     PL +A R G+
Sbjct: 368 ASP----NEVSSDGTT-----PLAIAKRLGY 389

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.9 bits (180), Expect = 3e-16
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            K   T LH  AQ GH PV   L++H            T L +A+ YG ++ V  L++  
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ 334

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
             +    NA+   T    SPLH A++ GH
Sbjct: 335 ADV----NAK---TKLGYSPLHQAAQQGH 356

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.8 bits (177), Expect = 6e-16
 Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            KD++T LHCAA+ GHT +V  LLE++ +P +  +   T L +AA+ G +ETV  L+   
Sbjct: 77  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 136

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
                        T    +PLH+A++ G 
Sbjct: 137 ASQ----ACM---TKKGFTPLHVAAKYGK 158

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.8 bits (177), Expect = 7e-16
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           T    T LH AA+ GH   V  LLE          +  T L +AA+YG++   + L+   
Sbjct: 110 TTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL-ER 168

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
                A            +PLH+A  + +
Sbjct: 169 DAHPNAAGKNGL------TPLHVAVHHNN 191

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.8 bits (177), Expect = 7e-16
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 11/91 (12%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           TK   T LH AA+YG   V   LLE    P        T L +A  +  L+ V  L+   
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG 202

Query: 86  PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
                  ++ A +  T     PLH+A++   
Sbjct: 203 GSP----HSPAWNGYT-----PLHIAAKQNQ 224

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.0 bits (175), Expect = 1e-15
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 19/95 (20%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            K+  T LH A  + +  +V  LL     P        T L +AA+  ++E   +L+   
Sbjct: 176 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL--- 232

Query: 86  PGLIQAYNA------RAQSTLFPASPLHLASRNGH 114
                 Y            T     PLHLA++ GH
Sbjct: 233 -----QYGGSANAESVQGVT-----PLHLAAQEGH 257

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 70.2 bits (173), Expect = 2e-15
 Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
               ET LH AA+ GHT V   LL++      +    +T L  AA+ G    V  L+   
Sbjct: 44  NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL--- 100

Query: 86  PGLIQAYNARA-QSTLFPASPLHLASRNGH 114
                  NA    +T    +PLH+A+R GH
Sbjct: 101 -----ENNANPNLATTAGHTPLHIAAREGH 125

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 69.8 bits (172), Expect = 3e-15
 Identities = 21/57 (36%), Positives = 30/57 (52%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
           TK   + LH AAQ GHT +V+ LL++   P   +S   T L +A + G +   D L 
Sbjct: 341 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 6/47 (12%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 26  TKDNETALHCAAQYGHTPVV---SQLLEHSCDPTIRNSRHETALDLA 69
           + D  T L  A + G+  V      + + +    + +    +  +  
Sbjct: 374 SSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 71.3 bits (176), Expect = 9e-17
 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           +   T L  A+ +G    V  LLE   DP I     E+AL LA+  G  + V  L+    
Sbjct: 34  ERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDV 93

Query: 87  GLIQAYNARAQ--STLFPASPLHLASRNGH 114
            +    N       T     PL  A R  H
Sbjct: 94  DI----NIYDWNGGT-----PLLYAVRGNH 114

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 67.8 bits (167), Expect = 2e-15
 Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            K+ E+AL  A+  G+T +V  LLE   D  I +    T L  A +   ++ V+ L+   
Sbjct: 66  AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL--- 122

Query: 86  PGLIQAYNA------RAQSTLFPASPLHLASRNGH 114
                A  A       +  T     P+ LA   G+
Sbjct: 123 -----ARGADLTTEADSGYT-----PMDLAVALGY 147

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 64.7 bits (159), Expect = 3e-14
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 18/90 (20%)

Query: 31  TALHCAAQYGHTPVVSQLLEHSCD-PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLI 89
            ++H  A  G    + + L    +     + R  T L  A+ +G +ETV  L       +
Sbjct: 4   LSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL-------L 56

Query: 90  QA---YNARAQ--STLFPASPLHLASRNGH 114
           +     +  A+   +      L LAS  G+
Sbjct: 57  EWGADPHILAKERES-----ALSLASTGGY 81

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 63.6 bits (156), Expect = 8e-14
 Identities = 14/57 (24%), Positives = 19/57 (33%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
             +  T L  A +  H   V  LL    D T       T +DLA   G  +    + 
Sbjct: 99  DWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.6 bits (104), Expect = 3e-06
 Identities = 6/34 (17%), Positives = 9/34 (26%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
                T +  A   G+  V   +  H       N
Sbjct: 132 ADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.5 bits (179), Expect = 1e-16
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           +  ETALH AA+Y  +    +LLE S D  I+++   T L  A           L+R   
Sbjct: 55  RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 114

Query: 87  GLIQAYNARAQ--STLFPASPLHLASRNGH 114
             +   +AR    +T     PL LA+R   
Sbjct: 115 TDL---DARMHDGTT-----PLILAARLAV 136

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 68.3 bits (168), Expect = 5e-15
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 17/94 (18%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
               ++ALH AA   +      LL++  +  ++N+R ET L LAA+ G  ET   L    
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL---- 209

Query: 86  PGLIQAY---NARAQS--TLFPASPLHLASRNGH 114
              +  +   +             P  +A    H
Sbjct: 210 ---LDHFANRDITDHMDRL-----PRDIAQERMH 235

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.0 bits (157), Expect = 2e-13
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
             D  T L  AA+     ++  L+    D    +   ++AL  AA    ++    L+  +
Sbjct: 121 MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KN 179

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
                  N R +      +PL LA+R G 
Sbjct: 180 GANKDMQNNREE------TPLFLAAREGS 202

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 63.3 bits (155), Expect = 3e-13
 Identities = 14/57 (24%), Positives = 21/57 (36%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
               ET L  AA+ G       LL+H  +  I +       D+A +    + V  L 
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 61.7 bits (151), Expect = 1e-12
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
                T LH A       V   L+ + + D   R     T L LAA+      ++ L+  
Sbjct: 87  DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-N 145

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
               + A +   +      S LH A+   +
Sbjct: 146 SHADVNAVDDLGK------SALHWAAAVNN 169

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 52.1 bits (126), Expect = 4e-09
 Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 25/106 (23%)

Query: 26  TKDNETALHCAAQYGHTP-------------VVSQLLEHSCDPTIRNSRH---ETALDLA 69
             D  T L  A+  G                V+S  +       + N      ETAL LA
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGAS--LHNQTDRTGETALHLA 64

Query: 70  AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
           A+Y R +    L+          +   +      +PLH A     +
Sbjct: 65  ARYSRSDAAKRLL-EASADANIQDNMGR------TPLHAAVSADAQ 103

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 71.7 bits (177), Expect = 2e-16
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           ++D  T L  AA+  H   V  L++       +++   T L LAA+ G  E V  L+   
Sbjct: 41  SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100

Query: 86  PGLIQAYNARAQ--STLFPASPLHLASRNGH 114
              +   N +     T     P+  A+   H
Sbjct: 101 QMDV---NCQDDGGWT-----PMIWATEYKH 123

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.1 bits (173), Expect = 8e-16
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
             +    LH AA  G   +   LL   CD    N   ++ L +AA+  R + V   +   
Sbjct: 141 DNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS-R 199

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              +   N   +      +PL  AS N  
Sbjct: 200 DSDVTLKNKEGE------TPLQCASLNSQ 222

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.7 bits (172), Expect = 1e-15
 Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            ++  + LH AA+ GH  +   L++   +    +    T L  AA+   LE V  L+   
Sbjct: 8   HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-KA 66

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
             L+   +A         + LHLA++ GH
Sbjct: 67  GALVDPKDAEGS------TCLHLAAKKGH 89

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.0 bits (170), Expect = 2e-15
 Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
                T +  A +Y H  +V  LL    D  IR++     L  AA  G ++  + L+   
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILL-AA 166

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              + A N          SPLH+A+R   
Sbjct: 167 KCDLHAVNIHGD------SPLHIAARENR 189

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.7 bits (159), Expect = 6e-14
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
             +  T LH AA+ GH  VV  LL +   D   ++    T +  A +Y  ++ V  L+ +
Sbjct: 74  DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL-S 132

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
               I   +            LH A+ +G 
Sbjct: 133 KGSDINIRDNEEN------ICLHWAAFSGC 156

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 63.2 bits (155), Expect = 3e-13
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
               ++ LH AA+      V   L    D T++N   ET L  A+   ++ +   + +
Sbjct: 174 NIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 38.5 bits (91), Expect = 2e-04
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCD 54
            K+ ET L CA+         Q+ +   D
Sbjct: 207 NKEGETPLQCASLNSQVWSALQMSKALQD 235

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.9 bits (180), Expect = 2e-16
 Identities = 26/103 (25%), Positives = 35/103 (33%), Gaps = 14/103 (13%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
                T LH AA      V S LL H  DPT+ N   ++A+D+A      E +    + H
Sbjct: 121 DLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH 180

Query: 86  PGLIQAYNARAQSTLFP--------------ASPLHLASRNGH 114
             L  A  A                       + LH A  + H
Sbjct: 181 SLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLH 223

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.3 bits (168), Expect = 8e-15
 Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            K     LH A  YGH  V   LL+H       +    T L  AA   R+E    L+ +H
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL-SH 146

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
                  N   +      S + +A     
Sbjct: 147 GADPTLVNCHGK------SAVDMAPTPEL 169

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.3 bits (168), Expect = 8e-15
 Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
                T LH AA Y    +V  LL+H  D   ++      L  A  YG  E  + L+  H
Sbjct: 55  DGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL-KH 113

Query: 86  PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
              +   NA      T     PLH A+    
Sbjct: 114 GACV---NAMDLWQFT-----PLHEAASKNR 136

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 63.3 bits (155), Expect = 5e-13
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 26/100 (26%)

Query: 26  TKDNETALHCAAQYGHTP---VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            + +ETALHCA    H     V   LL    +   +N    T L +AA+    + ++ L 
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLH 267

Query: 83  --------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                       G                + LH A+  GH
Sbjct: 268 KHGAKMNALDSLGQ---------------TALHRAALAGH 292

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.5 bits (153), Expect = 1e-12
 Identities = 21/57 (36%), Positives = 28/57 (49%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            KD  T LH AA+  H  V+  L +H       +S  +TAL  AA  G L+T   L+
Sbjct: 244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL 300

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 21/88 (23%), Positives = 32/88 (36%), Gaps = 14/88 (15%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
               +TALH AA  GH      LL +  DP+I + +  TA  +       E V  ++ + 
Sbjct: 277 DSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQIL-SE 330

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNG 113
              +                L  AS+ G
Sbjct: 331 STPM---RTSDVDY-----RLLEASKAG 350

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 60.2 bits (147), Expect = 7e-12
 Identities = 24/98 (24%), Positives = 35/98 (35%), Gaps = 24/98 (24%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTLV-- 82
            +  +  L  AA+ G+   +  LL   + +    + R  T L LAA Y R+  V  L+  
Sbjct: 21  GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH 80

Query: 83  ------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                 +   GL                PLH A   GH
Sbjct: 81  GADVHAKDKGGL---------------VPLHNACSYGH 103

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.9 bits (115), Expect = 1e-07
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 21  ELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG---RLET 77
           E L       + L  AA+      V + L        +   HETAL  A       R + 
Sbjct: 171 ERLTYEFKGHSLLQ-AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQV 229

Query: 78  VDTLVRTHPGLIQAYNARAQS--TLFPASPLHLASRNGH 114
            + L+R    +    N + +   T     PLH+A+   H
Sbjct: 230 AELLLRKGANV----NEKNKDFMT-----PLHVAAERAH 259

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 16/78 (20%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 37  AQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA 96
            ++G + +   L + S    +     +  L  AA+ G  E +  L+        A + R 
Sbjct: 1   GEFGKSAL--DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRK 58

Query: 97  QSTLFPASPLHLASRNGH 114
                  +PLHLA+    
Sbjct: 59  S------TPLHLAAGYNR 70

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 70.9 bits (175), Expect = 3e-16
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
               +T LH A       VV  L+     P   +   +TA  LA ++     +  L+ + 
Sbjct: 43  NNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSA 102

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
                   AR    L   + LH+A     
Sbjct: 103 APGTLDLEARNYDGL---TALHVAVNTEC 128

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 67.1 bits (165), Expect = 1e-14
 Identities = 24/90 (26%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRT 84
             D  TALH A        V  LLE   D    + +   + L  A +   L  V  L+  
Sbjct: 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL-Q 171

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
           H   + A            S LH AS  G 
Sbjct: 172 HGANVNAQMYSGS------SALHSASGRGL 195

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 66.7 bits (164), Expect = 2e-14
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH----SCDPTIRNSRHETALDLAAQYGRLETVDTL 81
            +  +TA H A ++     +  LL+     + D   RN    TAL +A      ETV  L
Sbjct: 76  DRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLL 135

Query: 82  VRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
           +      I A + ++  +     PL  A  N  
Sbjct: 136 L-ERGADIDAVDIKSGRS-----PLIHAVENNS 162

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.6 bits (161), Expect = 3e-14
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            K   + L  A +     +V  LL+H  +   +     +AL  A+  G L  V TLVR  
Sbjct: 147 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR-S 205

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
                  N          +PL +A     
Sbjct: 206 GADSSLKNCHND------TPLMVARSRRV 228

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.6 bits (161), Expect = 4e-14
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
                +ALH A+  G  P+V  L+    D +++N  ++T L +A     ++ +    
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKA 236

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 64.4 bits (158), Expect = 1e-13
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 11/93 (11%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLE----HSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
            +D +T LH A   G+ P V +L+        +  I N+  +T L LA        V  L
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65

Query: 82  VRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
           V T      A +   Q      +  HLA  +  
Sbjct: 66  V-TAGASPMALDRHGQ------TAAHLACEHRS 91

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 4/26 (15%), Positives = 7/26 (26%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH 51
              N+T L  A       ++      
Sbjct: 213 NCHNDTPLMVARSRRVIDILRGKATR 238

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 69.4 bits (171), Expect = 4e-16
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 13/92 (14%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            + +   L  AA  G    V  LLE   +P   NS     + +    G     +      
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAEL----- 62

Query: 86  PGLIQA---YNARAQSTLFPASPLHLASRNGH 114
             L+      N    +TL    P+H A+R G 
Sbjct: 63  --LLLHGAEPNCADPATL--TRPVHDAAREGF 90

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 66.7 bits (164), Expect = 3e-15
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 13/90 (14%)

Query: 26  TKDNET-ALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
                T  +H AA+ G    +  L        +R++     +DLA + G  +    L   
Sbjct: 74  DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA- 132

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
             G  +  N              + +  G 
Sbjct: 133 AAGGTRGSN-----------HARIDAAEGP 151

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 54.4 bits (132), Expect = 2e-10
 Identities = 8/54 (14%), Positives = 13/54 (24%), Gaps = 5/54 (9%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 79
                  +  A + GH  V   L   +               + A  G  +  D
Sbjct: 108 DAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS-----NHARIDAAEGPSDIPD 156

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.8 bits (177), Expect = 4e-16
 Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 22/110 (20%)

Query: 27  KDNE--TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
            DNE    LH AA  G+  +   L+         NS  +T LD+A +    E +   V  
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR 161

Query: 85  HPGLIQAYNARAQSTLFPA--------------------SPLHLASRNGH 114
               I+A     +  +                       + LH+A+  G+
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGY 211

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.7 bits (151), Expect = 1e-12
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
             D  TALH A    +  +V  L+E+  +    ++     L  AA  G L+  + L+ + 
Sbjct: 70  NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI-SQ 128

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              + A N+         +PL +A     
Sbjct: 129 GAHVGAVNSEGD------TPLDIAEEEAM 151

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.7 bits (151), Expect = 2e-12
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 23/97 (23%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
            K   TALH AA  G+T V+  L++   D  I++    T L  AA +G+ E    LV   
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL 255

Query: 83  -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                    G                +   +A  +  
Sbjct: 256 CDMEAVNKVGQ---------------TAFDVADEDIL 277

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 24/91 (26%), Positives = 32/91 (35%), Gaps = 12/91 (13%)

Query: 27  KDNE-TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           K ++      A   G T  V +LLE   D    N    TAL  A     ++ V  LV  +
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVE-N 95

Query: 86  PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
              I   N             PLH A+  G+
Sbjct: 96  GANI---NQPDNEGWI-----PLHAAASCGY 118

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.2 bits (147), Expect = 6e-12
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
             D  T LH AA +G       L+E+ CD    N   +TA D+A +       +  
Sbjct: 229 DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ 284

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 56.0 bits (136), Expect = 2e-10
 Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 19/101 (18%)

Query: 21  ELLMLTKDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 78
           +  +  +    E A     +         L     +         TAL +AA  G  E +
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215

Query: 79  DTLVRTHPGLIQA---YNARAQS--TLFPASPLHLASRNGH 114
             L       IQA    N +     T     PLH A+  G 
Sbjct: 216 KLL-------IQARYDVNIKDYDGWT-----PLHAAAHWGK 244

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 52.5 bits (127), Expect = 3e-09
 Identities = 12/96 (12%), Positives = 21/96 (21%), Gaps = 24/96 (25%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
              +         G    +   +       ++       L  A   G  E V  L+    
Sbjct: 6   AKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRLLERGA 64

Query: 83  ----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                   GL               + LH A  + +
Sbjct: 65  DINYANVDGL---------------TALHQACIDDN 85

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 70.7 bits (174), Expect = 4e-16
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
             +  TALH A   GHT +V  L++   +    +S   T L  AA    ++    LV   
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLV-ES 125

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              + A       T   A+        G+
Sbjct: 126 GAAVFAMTYSDMQT---AADKCEEMEEGY 151

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 68.4 bits (168), Expect = 3e-15
 Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 33/102 (32%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
                  L  ++  G   +V +++    DP++ N    TAL  A   G  E V  LV   
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG 93

Query: 83  ----------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                      T                    PLH A+   +
Sbjct: 94  VNVNAADSDGWT--------------------PLHCAASCNN 115

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 64.9 bits (159), Expect = 6e-14
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 8/88 (9%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
              + +L    +       S+ + H       N      L  ++  G  + V  ++    
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRII-YEV 60

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
                 N          + LH A   GH
Sbjct: 61  DDPSLPNDEGI------TALHNAVCAGH 82

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 56.5 bits (137), Expect = 1e-10
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDL--AAQYGRLETVDTLV 82
             D  T LHCAA   +  V   L+E          S  +TA D     + G  +    L 
Sbjct: 100 DSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLY 159

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 11/53 (20%), Positives = 14/53 (26%), Gaps = 2/53 (3%)

Query: 27  KDNETA--LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLET 77
            D +TA       + G+T     L        I N     AL         E 
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 70.7 bits (174), Expect = 5e-16
 Identities = 20/105 (19%), Positives = 32/105 (30%), Gaps = 15/105 (14%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT- 84
            +   TALH AA Y    VV  L+E   D  + + R  TAL+LA +  +       ++  
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFG 167

Query: 85  ----HPGLIQAYNARAQSTLFPAS----------PLHLASRNGHR 115
                  +I     +                     +L       
Sbjct: 168 RRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGG 212

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 68.4 bits (168), Expect = 4e-15
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
            + ET    AA+      +SQLL    D    +    TAL   A  G  + V  L     
Sbjct: 43  SEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAG 100

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
             +   + R   T      LH+A+    
Sbjct: 101 ADLDHRDMRGGLT-----ALHMAAGYVR 123

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 27/97 (27%), Positives = 33/97 (34%), Gaps = 24/97 (24%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLV--- 82
           ++  TAL   A  G    V  L E   D   R+ R   TAL +AA Y R E V+ LV   
Sbjct: 75  ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 134

Query: 83  -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                    GL               + L LA     
Sbjct: 135 ADIEVEDERGL---------------TALELAREILK 156

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 59.5 bits (145), Expect = 7e-12
 Identities = 13/87 (14%), Positives = 27/87 (31%), Gaps = 11/87 (12%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           +         + GH+P        + D     S +ET    AA+    + +  L+     
Sbjct: 14  EGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL--EDR 68

Query: 88  LIQAYNARAQSTLFPASPLHLASRNGH 114
            + A +   +      + L   +  G 
Sbjct: 69  DVDAVDENGR------TALLFVAGLGS 89

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 11/111 (9%), Positives = 18/111 (16%), Gaps = 31/111 (27%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH-------SCDPTIRNSRHE--------------- 63
            +   TAL  A +   T      ++             +     E               
Sbjct: 141 DERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGK 200

Query: 64  TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
               L       +        H        A+          L  A     
Sbjct: 201 DVEYLVRWKDGGDCEWVKGV-HVAED---VAKDYED-----GLEYAVAESV 242

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 7/61 (11%), Positives = 17/61 (27%), Gaps = 2/61 (3%)

Query: 15  ETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 74
           E    DE++      +   +                H  +   ++  +E  L+ A     
Sbjct: 185 EYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESV 242

Query: 75  L 75
           +
Sbjct: 243 I 243

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.5 bits (176), Expect = 6e-16
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
            D  T L  A       +V+ L++   DPTI N    +AL  AA       +  ++    
Sbjct: 164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLN-ST 222

Query: 87  GLIQAYNARAQ--STLFPASPLHLASRNGHR 115
            L        +   T      L + + N  R
Sbjct: 223 KLKGDIEELDRNGMT-----ALMIVAHNEGR 248

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 63.4 bits (155), Expect = 6e-13
 Identities = 15/57 (26%), Positives = 22/57 (38%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            +D +T +  AAQ G   VV  L++        ++   TA  LA        VD   
Sbjct: 310 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 63.0 bits (154), Expect = 7e-13
 Identities = 22/97 (22%), Positives = 28/97 (28%), Gaps = 15/97 (15%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHS--------CDPTIRNSRHETALDLAAQYGRLET 77
            + N T LH  A          L+ H          D    +    T L LA    R   
Sbjct: 122 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181

Query: 78  VDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
           V  L+         YN   +      S LH A+ N  
Sbjct: 182 VAYLM-KAGADPTIYNKSER------SALHQAAANRD 211

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
               TALH AAQ  + P+V  L+     +   ++   +T + LAAQ GR+E V  L+   
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI-QQ 335

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              ++A +A         +   LA  N H
Sbjct: 336 GASVEAVDATDH------TARQLAQANNH 358

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.8 bits (143), Expect = 2e-11
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 19/102 (18%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSC---DPTIRNSRHETALDLAAQYGRLETVDT-- 80
            K   +ALH AA      ++  +L  +    D    +    TAL + A     + V +  
Sbjct: 196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAK 255

Query: 81  -LV-------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
            LV               +   + +      + LH A++  +
Sbjct: 256 LLVEKGAKVDYDGAARKDSEKYKGR------TALHYAAQVSN 291

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 3e-11
 Identities = 12/88 (13%), Positives = 22/88 (25%), Gaps = 9/88 (10%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
             +          G+  +      +   PT         L   A  G     + + R   
Sbjct: 59  HYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITRESV 117

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
            +I   + R        + LH  + N  
Sbjct: 118 NIIDPRHNR--------TVLHWIASNSS 137

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 55.7 bits (135), Expect = 2e-10
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 23/103 (22%)

Query: 26  TKDNETALHCAAQYGHTPVVSQ---LLEH--------SCDPTIRNSRHETALDLAAQYGR 74
            ++  TAL   A       V+    L+E         +        +  TAL  AAQ   
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSN 291

Query: 75  LETVDTLVRTHPGLIQAY-NARAQ--STLFPASPLHLASRNGH 114
           +  V  LV    G   +  + + +   T     P+ LA++ G 
Sbjct: 292 MPIVKYLV-GEKG---SNKDKQDEDGKT-----PIMLAAQEGR 325

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 5/28 (17%), Positives = 8/28 (28%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCD 54
             + TA   A    H  +V        +
Sbjct: 344 ATDHTARQLAQANNHHNIVDIFDRCRPE 371

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 69.8 bits (172), Expect = 6e-16
 Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 14/92 (15%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
            +  T L+ A       +   L++   D  ++NS  ++    A   GR E +  +++   
Sbjct: 37  TEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHA- 95

Query: 87  GLIQAYNARAQ----STLFPASPLHLASRNGH 114
                 +                L  A+  GH
Sbjct: 96  ----TPDLNKHNRYGGN-----ALIPAAEKGH 118

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.1 bits (165), Expect = 7e-15
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           T +    L  A Q     V   L + +      ++   T L++A     +E    L+   
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI-DR 61

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              I   N+ +       SP   A   G 
Sbjct: 62  GADINLQNSISD------SPYLYAGAQGR 84

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 58.6 bits (143), Expect = 1e-11
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLV 82
             +++    A   G T +++ +L+H+  D    N     AL  AA+ G ++ V  L+
Sbjct: 70  SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL 126

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 27  KDNETALHCAAQY-----GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
               TAL  A         +  +V  L+E+  D +I+++   TA+D A Q G  E    L
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197

Query: 82  V 82
            
Sbjct: 198 A 198

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 54.4 bits (132), Expect = 3e-10
 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 39/107 (36%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSC-DPTIRNSRHETALDLAAQY-----GRLETVDT 80
           +    AL  AA+ GH   V  LLE    D   +N    TAL  A           + V  
Sbjct: 104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKL 163

Query: 81  LV-------------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
           L+             RT                     +  A++ G+
Sbjct: 164 LMENGADQSIKDNSGRT--------------------AMDYANQKGY 190

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHS 52
               TA+  A Q G+T +   L +++
Sbjct: 176 NSGRTAMDYANQKGYTEISKILAQYN 201

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.1 bits (170), Expect = 7e-16
 Identities = 18/57 (31%), Positives = 26/57 (45%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            +   TALH AA Y    VV  L+E   D  + + R  TAL+LA +  +       +
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.5 bits (166), Expect = 3e-15
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
            + ET    AA+      +SQLL    D    +    TAL   A  G  + V  L     
Sbjct: 42  SEYETPWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA-EAG 99

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
             +   + R   T      LH+A+    
Sbjct: 100 ADLDHRDMRGGLT-----ALHMAAGYVR 122

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 66.4 bits (163), Expect = 7e-15
 Identities = 26/102 (25%), Positives = 31/102 (30%), Gaps = 34/102 (33%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLV--- 82
           ++  TAL   A  G    V  L E   D   R+ R   TAL +AA Y R E V+ LV   
Sbjct: 74  ENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG 133

Query: 83  ----------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                      T                     L LA     
Sbjct: 134 ADIEVEDERGLT--------------------ALELAREILK 155

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 58.7 bits (143), Expect = 6e-12
 Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 15/90 (16%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
            +         + GH+P        + D     S +ET    AA+    + +  L+    
Sbjct: 12  GEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLL--ED 66

Query: 87  GLIQAYNARAQS--TLFPASPLHLASRNGH 114
             +   +A  ++  T      L   +  G 
Sbjct: 67  RDV---DAVDENGRT-----ALLFVAGLGS 88

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 5/25 (20%), Positives = 9/25 (36%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEH 51
           +   TAL  A +   T      ++ 
Sbjct: 141 ERGLTALELAREILKTTPKGNPMQF 165

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 67.8 bits (167), Expect = 7e-16
 Identities = 20/91 (21%), Positives = 28/91 (30%), Gaps = 13/91 (14%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
              +     A + G    V   +    D           L  AA  G+LE ++ L+    
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL--- 61

Query: 87  GLIQAY-NARAQ--STLFPASPLHLASRNGH 114
               A  NA  +   T     PL  A   GH
Sbjct: 62  --KGADINAPDKHHIT-----PLLSAVYEGH 85

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 66.3 bits (163), Expect = 3e-15
 Identities = 19/101 (18%), Positives = 28/101 (27%), Gaps = 23/101 (22%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
           +     LH AA  G   ++  LL    D    +  H T L  A   G +  V  L+    
Sbjct: 38  EGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97

Query: 83  ----RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
               +   GL               +          +  LQ
Sbjct: 98  DKTVKGPDGL---------------TAFEATDNQAIKALLQ 123

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 69.0 bits (170), Expect = 8e-16
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            + ++T LH AA +GH  +V +LL++  D    N      L  A  +G+ +  + LV  +
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVA-N 127

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
             L+   N   +       P+  A     
Sbjct: 128 GALVSICNKYGE------MPVDKAKAPLR 150

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 66.7 bits (164), Expect = 5e-15
 Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
                + LH A + G + VV  L+       + N   +T L LAA +G  + V  L++ +
Sbjct: 36  DDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQ-Y 94

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              I A N           PLH A   G 
Sbjct: 95  KADINAVNEHGN------VPLHYACFWGQ 117

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 66.7 bits (164), Expect = 6e-15
 Identities = 14/89 (15%), Positives = 21/89 (23%), Gaps = 13/89 (14%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            +     LH A  +G   V   L+ +    +I N   E  +D A    R    +      
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE--- 158

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
                              P       G 
Sbjct: 159 -----KMGQNLNRI-----PYKDTFWKGT 177

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 64.0 bits (157), Expect = 5e-14
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
           + +    +    + G+   V   L+++  D    +    + L  A + GR   V+ L+  
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-M 60

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
               I   N    +      PLHLA+ +GHR
Sbjct: 61  RGARINVMNRGDDT------PLHLAASHGHR 85

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 67.5 bits (166), Expect = 1e-15
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 11/90 (12%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
             ++  L  AA  G    V QLLE   DP   N      + +    G  +  + L+    
Sbjct: 10  GSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLL---- 64

Query: 87  GLIQAYNA--RAQSTLFPASPLHLASRNGH 114
                + A            P+H A+R G 
Sbjct: 65  ----LHGAEPNCADPATLTRPVHDAAREGF 90

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 61.7 bits (151), Expect = 2e-13
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 11/90 (12%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET-ALDLAAQYGRLETVDTLVRTH 85
           +     +      G   V   LL H  +P   +    T  +  AA+ G L+T+  L    
Sbjct: 43  RFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLH--- 98

Query: 86  PGLIQAYNARA-QSTLFPASPLHLASRNGH 114
                   AR      +   P+ LA   GH
Sbjct: 99  -----RAGARLDVCDAWGRLPVDLAEEQGH 123

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.9 bits (149), Expect = 4e-13
 Identities = 11/59 (18%), Positives = 20/59 (33%), Gaps = 3/59 (5%)

Query: 27  KDNE---TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            D       +H AA+ G    +  L        + ++     +DLA + G  +    L 
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLH 131

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.1 bits (95), Expect = 3e-05
 Identities = 4/26 (15%), Positives = 7/26 (26%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH 51
                  +  A + GH  +   L   
Sbjct: 108 DAWGRLPVDLAEEQGHRDIARYLHAA 133

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 69.4 bits (171), Expect = 1e-15
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 6/89 (6%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           T    T LH A       V   L+E+     I++  ++  L  AA  G L+ ++ L    
Sbjct: 104 TNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG 163

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              +   + +        +PL  A   GH
Sbjct: 164 KSAVNWQDKQGW------TPLFHALAEGH 186

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 67.9 bits (167), Expect = 5e-15
 Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE---TALDLAAQYGRLETVDTLVR 83
           +D    LH +  +    + S LL    +  + +   +   T   +A   G LE V +L  
Sbjct: 34  QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD 93

Query: 84  THPGL-IQAYNARAQSTLFPASPLHLASRNGH 114
                 +     +        + LHLA     
Sbjct: 94  RPLKPDLNKITNQGV------TCLHLAVGKKW 119

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 66.3 bits (163), Expect = 2e-14
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 5/87 (5%)

Query: 29  NETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           +   LH A        V +LL         ++      L  +  +   E    L+ +   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLL-SKME 60

Query: 88  LIQAYNARAQSTLFPASPLHLASRNGH 114
            +   N          +P H+A   G+
Sbjct: 61  NV---NLDDYPDDSGWTPFHIACSVGN 84

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 65.2 bits (160), Expect = 5e-14
 Identities = 20/91 (21%), Positives = 31/91 (34%), Gaps = 9/91 (9%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTI--RNSRHETALDLAAQYGRLETVDTLVR 83
                T  H A   G+  VV  L +    P +    ++  T L LA      E    L+ 
Sbjct: 69  DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI- 127

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGH 114
            +   ++  +   Q       PLH A+  G 
Sbjct: 128 ENGASVRIKDKFNQ------IPLHRAASVGS 152

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.0 bits (157), Expect = 1e-13
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 7/94 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
            K N+  LH AA  G   ++  L          ++ +  T L  A   G  +    LV  
Sbjct: 137 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 196

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGHRFYL 118
           +       + +            +A     + + 
Sbjct: 197 YGAEYDLVDNKGA------KAEDVALNEQVKKFF 224

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 70.7 bits (173), Expect = 1e-15
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE--TALDLAAQYGRLETVDTL 81
           ++  +N  A   AA+ GH  V+++L E +    +   + E   A  LAA+ G L  ++ L
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 182

Query: 82  VRTHPGL----IQAYNARAQSTLFPASPLHLASRNGH 114
               P      IQA N  A            A   GH
Sbjct: 183 CELAPTEATAMIQAENYYA--------FRWAAVGRGH 211

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 28  DNETALHCAAQYGHTP---VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
            +E     AA  G +     +  LL       +  + +  A  LAA+ G L  ++ L   
Sbjct: 91  KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL 150

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
            P  I A                LA+ NGH
Sbjct: 151 APTEIMAMIQAENYH-----AFRLAAENGH 175

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 19/102 (18%)

Query: 14  METETEDELLMLTKDNETALHCAA-QYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQY 72
            E    +   M+  +N  A   AA   GH  V++ LL+              A     +Y
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAY-------AEIHEFEY 235

Query: 73  GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
           G       + R    L + ++A             L++ +G 
Sbjct: 236 GEKYVNPFIARHVNRLKEMHDA-----------FKLSNPDGV 266

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.4 bits (115), Expect = 1e-07
 Identities = 9/96 (9%), Positives = 22/96 (22%), Gaps = 18/96 (18%)

Query: 27  KDNETALHCAAQYGHTPVVSQL--------LEHSCDPTIRNSRHETALDLAAQYGRLETV 78
                 L    +     ++  +        ++               L LA + G     
Sbjct: 276 LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGAC 335

Query: 79  DTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
             L+          +  +   L  A+  ++    G 
Sbjct: 336 ALLL----------SIPSVLALTKANNYYINETGGR 361

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.2 bits (112), Expect = 2e-07
 Identities = 11/59 (18%), Positives = 19/59 (32%), Gaps = 3/59 (5%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            D    L  A + G+    + LL     P++          +    GRL+     +  H
Sbjct: 317 GDANELLRLALRLGNQGACALLLSI---PSVLALTKANNYYINETGGRLDLRAVALEHH 372

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 14/90 (15%), Positives = 24/90 (26%), Gaps = 10/90 (11%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL-VRT 84
            K+   A   +   G   +V++                  L    +      +D +    
Sbjct: 251 LKEMHDAFKLSNPDGVFDLVTKSECLQG---------FYMLRNLIRRNDEVLLDDIRFLL 301

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
               I+A    A         L LA R G+
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGN 331

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 66.2 bits (163), Expect = 1e-15
 Identities = 36/92 (39%), Positives = 46/92 (50%), Gaps = 17/92 (18%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           +  T LH AA+ GH  VV  LLE   D   ++    T L LAA+ G LE V         
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL------- 53

Query: 88  LIQA---YNARAQ--STLFPASPLHLASRNGH 114
           L++A    NA+ +   T     PLHLA+RNGH
Sbjct: 54  LLEAGADVNAKDKNGRT-----PLHLAARNGH 80

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 61.6 bits (151), Expect = 8e-14
 Identities = 24/57 (42%), Positives = 30/57 (52%)

Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
           K+  T LH AA+ GH  VV  LLE   D   ++    T L LAA+ G LE V  L+
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 40.0 bits (95), Expect = 1e-05
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 26 TKDNETALHCAAQYGHTPVVSQLLEH 51
           K+  T LH AA+ GH  VV  LLE 
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEA 90

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 67.0 bits (165), Expect = 1e-15
 Identities = 34/100 (34%), Positives = 41/100 (41%), Gaps = 33/100 (33%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV----- 82
           +  T LH AA+ GH  VV  LLE   D   ++    T L LAA+ G LE V  L+     
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60

Query: 83  --------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                   RT                    PLHLA+RNGH
Sbjct: 61  VNAKDKNGRT--------------------PLHLAARNGH 80

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 66.6 bits (164), Expect = 2e-15
 Identities = 36/97 (37%), Positives = 43/97 (44%), Gaps = 23/97 (23%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            K+  T LH AA+ GH  VV  LLE   D   ++    T L LAA+ G LE V  L+   
Sbjct: 32  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL--- 88

Query: 86  PGLIQAYNARAQ--------STLFPASPLHLASRNGH 114
                   A A          T     PLHLA+RNGH
Sbjct: 89  -------EAGADVNAKDKNGRT-----PLHLAARNGH 113

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 60.8 bits (149), Expect = 3e-13
 Identities = 24/57 (42%), Positives = 30/57 (52%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            K+  T LH AA+ GH  VV  LLE   D   ++    T L LAA+ G LE V  L+
Sbjct: 65  DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 41.6 bits (99), Expect = 7e-06
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH 51
            K+  T LH AA+ GH  VV  LLE 
Sbjct: 98  DKNGRTPLHLAARNGHLEVVKLLLEA 123

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 69.8 bits (172), Expect = 2e-15
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 13/97 (13%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
            K+  T    AA  G   ++   L    D    +    TA   AA YG+++ +  L    
Sbjct: 69  KKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRG 128

Query: 83  -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                R      Q    +  +T      L  A+  GH
Sbjct: 129 ANVNLRRKTKEDQERLRKGGAT-----ALMDAAEKGH 160

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.3 bits (163), Expect = 3e-14
 Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 36/104 (34%)

Query: 27  KDNE---TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV- 82
           ++ E   T LH A Q     +V  LL H  DP +R     T   LAA  G ++ +   + 
Sbjct: 34  QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLS 93

Query: 83  ------------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                        T                        A+  G 
Sbjct: 94  KGADVNECDFYGFT--------------------AFMEAAVYGK 117

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.0 bits (162), Expect = 4e-14
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 12/92 (13%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRT 84
             ++   L  A Q     +V QLLE   +   +      T L  A Q  R + V+ L+R 
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR- 60

Query: 85  HPGLIQAYNARAQ--STLFPASPLHLASRNGH 114
           H         R +  +T     P  LA+  G 
Sbjct: 61  HGADP---VLRKKNGAT-----PFLLAAIAGS 84

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 64.0 bits (157), Expect = 2e-13
 Identities = 23/111 (20%), Positives = 34/111 (30%), Gaps = 22/111 (19%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE----------TALDLAAQYGRL 75
                TA   AA YG    +  L +   +  +R    E          TAL  AA+ G +
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 76  ETVDTLVRTHPGLIQAY-NARAQS--TLFPASPLHLASRNGHRFYLQQKVQ 123
           E +  L+    G   A  NA             L  A  +     ++    
Sbjct: 162 EVLKILL-DEMG---ADVNACDNMGRN-----ALIHALLSSDDSDVEAITH 203

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.5 bits (153), Expect = 9e-13
 Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 16/96 (16%)

Query: 26  TKDNETALHCAAQYGHTP----VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
                 AL  A           +   LL+H  D  +R  R +T L LA +   L  V  L
Sbjct: 179 DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRL 238

Query: 82  VRTHPGLIQAY-NARAQS--TLFPASPLHLASRNGH 114
           +           N       T      L LA     
Sbjct: 239 L-EQEH---IEINDTDSDGKT-----ALLLAVELKL 265

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.6 bits (148), Expect = 4e-12
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 14/108 (12%)

Query: 13  DMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSC-DPTIRNSRHETALDLAAQ 71
           ++  +T+++   L K   TAL  AA+ GH  V+  LL+    D    ++    AL  A  
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191

Query: 72  YGRLETVDTLVRTHPGLIQAY---NARAQS--TLFPASPLHLASRNGH 114
                 V+ +      L+      N R +   T     PL LA    H
Sbjct: 192 SSDDSDVEAITHL---LLDHGADVNVRGERGKT-----PLILAVEKKH 231

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 60.2 bits (147), Expect = 5e-12
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLV 82
           +  +T L  A +  H  +V +LLE    +    +S  +TAL LA +    +  + L 
Sbjct: 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
             D +TAL  A +     +   L +        +
Sbjct: 250 DSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 68.2 bits (168), Expect = 3e-15
 Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 10/90 (11%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           +  ETALH AA+Y  +    +LLE S D  I+++   T L  A           L+R   
Sbjct: 23  RTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRA 82

Query: 87  GLIQAYNARAQS--TLFPASPLHLASRNGH 114
             +   +AR     T     PL LA+R   
Sbjct: 83  TDL---DARMHDGTT-----PLILAARLAV 104

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 65.9 bits (162), Expect = 3e-14
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 23/97 (23%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
               ++ALH AA   +      LL++  +  ++N+R ET L LAA+ G  ET   L+   
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF 181

Query: 83  -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                  H                   P  +A    H
Sbjct: 182 ANRDITDHMDR---------------LPRDIAQERMH 203

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.4 bits (158), Expect = 7e-14
 Identities = 14/57 (24%), Positives = 21/57 (36%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
               ET L  AA+ G       LL+H  +  I +       D+A +    + V  L 
Sbjct: 155 NNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.6 bits (156), Expect = 2e-13
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
             D  T L  AA+     ++  L+    D    +   ++AL  AA    ++    L+  +
Sbjct: 89  MHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KN 147

Query: 86  PGLIQAYNARAQS--TLFPASPLHLASRNGH 114
                  + +     T     PL LA+R G 
Sbjct: 148 GANK---DMQNNREET-----PLFLAAREGS 170

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.8 bits (154), Expect = 4e-13
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 8/89 (8%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
               T LH A       V   L+ +   D   R     T L LAA+      ++ L+   
Sbjct: 56  NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI-NS 114

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              + A +   +S       LH A+   +
Sbjct: 115 HADVNAVDDLGKS------ALHWAAAVNN 137

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 39.3 bits (93), Expect = 1e-04
 Identities = 5/26 (19%), Positives = 9/26 (34%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH 51
              +      A +  H  +V  L E+
Sbjct: 188 DHMDRLPRDIAQERMHHDIVRLLDEY 213

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 66.2 bits (163), Expect = 6e-15
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
               T LH AA  GH  +V  LL++  D    +    T L LAA +G LE V+ L+  + 
Sbjct: 45  ASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KNG 103

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
             + A +          +PLHLA+  GH
Sbjct: 104 ADVNANDMEGH------TPLHLAAMFGH 125

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 65.5 bits (161), Expect = 1e-14
 Identities = 27/90 (30%), Positives = 37/90 (41%), Gaps = 11/90 (12%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
            D    L  AA+ G    V  L+ +  D    ++   T L LAA  G LE V+ L+  + 
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KNG 70

Query: 87  GLIQAYNARAQ--STLFPASPLHLASRNGH 114
             +   NA      T     PL LA+  GH
Sbjct: 71  ADV---NAVDHAGMT-----PLRLAALFGH 92

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 64.3 bits (158), Expect = 4e-14
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 11/91 (12%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
                T L  AA +GH  +V  LL++  D    +    T L LAA +G LE V+ L+  +
Sbjct: 77  DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KN 135

Query: 86  PGLIQAYNARAQ--STLFPASPLHLASRNGH 114
              +   NA+ +   T        ++  NG+
Sbjct: 136 GADV---NAQDKFGKT-----AFDISIDNGN 158

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 60.5 bits (148), Expect = 1e-12
 Identities = 16/57 (28%), Positives = 28/57 (49%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
             +  T LH AA +GH  +V  LL++  D   ++   +TA D++   G  +  + L 
Sbjct: 110 DMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.8 bits (97), Expect = 2e-05
 Identities = 5/27 (18%), Positives = 11/27 (40%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHS 52
            K  +TA   +   G+  +   L + +
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEILQKLN 169

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.9 bits (162), Expect = 9e-15
 Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 14/92 (15%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           +     +H AA+ G    +  LLE   D  I ++     L LAA+ G L  V+ LV  H 
Sbjct: 68  RTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV-KH- 125

Query: 87  GLIQAYNARAQ----STLFPASPLHLASRNGH 114
               A N   +     T        LA   G 
Sbjct: 126 T---ASNVGHRNHKGDT-----ACDLARLYGR 149

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 62.8 bits (154), Expect = 1e-13
 Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 34/101 (33%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
               TAL      G+  +  +LL    +P +++      +  AA+ G L+T+ TL+    
Sbjct: 36  GFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94

Query: 83  ---------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                                          PLHLA++ GH
Sbjct: 95  DVNIEDNEGNL--------------------PLHLAAKEGH 115

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 61.2 bits (150), Expect = 4e-13
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            +    LH AA+ GH  VV  L++H + +   RN + +TA DLA  YGR E V  + 
Sbjct: 101 NEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 60.5 bits (148), Expect = 9e-13
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 25  LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
           + +     L  AA  G    ++ LL+++ +   +N    TAL +    G  E    L+  
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLL-L 58

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                   +          + +H A+R G 
Sbjct: 59  RGANPDLKDRTGF------AVIHDAARAGF 82

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.1 bits (90), Expect = 2e-04
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEH 51
              +TA   A  YG   VVS +  +
Sbjct: 135 HKGDTACDLARLYGRNEVVSLMQAN 159

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 14/94 (14%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE---TALDLAAQYGRLETVDTLV 82
           T+D +TALH A  + H P +  LL  S      + +++   TAL LAA  G   TV+ L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 83  RTHPGLIQAYNARAQS--TLFPASPLHLASRNGH 114
                 +       +   T      LHLA R   
Sbjct: 66  A-AGAGV---LVAERGGHT-----ALHLACRVRA 90

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 12/92 (13%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRT 84
             D  T LH A  +    +V  L +   D          T L LA +      ++ L++ 
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLK- 213

Query: 85  HPGLIQAYNARAQS--TLFPASPLHLASRNGH 114
                    AR     T     PL  A    +
Sbjct: 214 AGADP---TARMYGGRT-----PLGSALLRPN 237

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 18/99 (18%), Positives = 24/99 (24%), Gaps = 26/99 (26%)

Query: 27  KDNE---TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV- 82
            +     T LH A +     V+  LL+   DPT R     T L  A           L  
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246

Query: 83  -------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                       L               SP   +  +  
Sbjct: 247 HGAPEPEDGGDKL---------------SPCSSSGSDSD 270

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.0 bits (162), Expect = 4e-14
 Identities = 6/56 (10%), Positives = 11/56 (19%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
                T L  A    +  +   L  H            +    +      +  D  
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.6 bits (161), Expect = 6e-14
 Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 10/97 (10%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
               +TALH AA  G    V +L        +      TAL LA +         L+   
Sbjct: 42  NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101

Query: 83  -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                      +         T    +P  + S+   
Sbjct: 102 PSHPRDASDTYLTQSQDCTPDTSH--APAAVDSQPNP 136

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 54.9 bits (133), Expect = 4e-10
 Identities = 16/110 (14%), Positives = 25/110 (22%), Gaps = 9/110 (8%)

Query: 6   NLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHET 64
           +  R + D       +       +       +Q            +        N    T
Sbjct: 103 SHPRDASDTYLTQSQDCT--PDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160

Query: 65  ALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
            L +A  +   E V  L       +         T     PLHLA     
Sbjct: 161 PLHVAVIHKDAEMVRLLRD-AGADLNKPEPTCGRT-----PLHLAVEAQA 204

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 65.1 bits (160), Expect = 1e-14
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 12/90 (13%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           +  +TAL     +G T +  +LL+    P ++++   + +  AA+ G L+T+  LV  H 
Sbjct: 34  RFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVE-HG 91

Query: 87  GLIQAYNARAQ--STLFPASPLHLASRNGH 114
             +   N      +      P+HLA + GH
Sbjct: 92  ADV---NVPDGTGAL-----PIHLAVQEGH 113

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 64.4 bits (158), Expect = 3e-14
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 14/92 (15%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
                + +H AA+ G    +  L+EH  D  + +      + LA Q G    V  L    
Sbjct: 65  DTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-- 122

Query: 86  PGLIQAY-NARAQ--STLFPASPLHLASRNGH 114
               ++  + R     T     PL LA + G 
Sbjct: 123 ----ESDLHRRDARGLT-----PLELALQRGA 145

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 62.4 bits (153), Expect = 1e-13
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
                  +H A Q GHT VVS L   S D   R++R  T L+LA Q G  + VD L 
Sbjct: 98  DGTGALPIHLAVQEGHTAVVSFLAAES-DLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 54.3 bits (132), Expect = 2e-10
 Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 9/87 (10%)

Query: 29  NETALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
               L  AA  G    V +LL      P   N   +TAL +   +G       L+     
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELL-KQGA 59

Query: 88  LIQAYNARAQSTLFPASPLHLASRNGH 114
                +          SP+H A+R G 
Sbjct: 60  SPNVQDTSGT------SPVHDAARTGF 80

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 8/26 (30%), Positives = 9/26 (34%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH 51
                T L  A Q G   +V  L  H
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQGH 155

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 64.1 bits (157), Expect = 1e-14
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 7/89 (7%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
            D    L  AA+ G    V  L+ +  D   ++    T L LAA+ G LE V  L+    
Sbjct: 22  SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLE-AG 80

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGHR 115
             + A +   +      +   ++  NG+ 
Sbjct: 81  ADVXAQDKFGK------TAFDISIDNGNE 103

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 57.2 bits (139), Expect = 7e-12
 Identities = 19/55 (34%), Positives = 28/55 (50%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
           K+  T LH AA+ GH  VV  LLE   D   ++   +TA D++   G  +  + L
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 52.6 bits (127), Expect = 3e-10
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 14/81 (17%)

Query: 36  AAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR 95
            + + H    S L+          S     L  AA+ G+ + V  L+  +   +    A+
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRILMA-NGADV---AAK 53

Query: 96  AQ--STLFPASPLHLASRNGH 114
            +  ST     PLHLA+RNGH
Sbjct: 54  DKNGST-----PLHLAARNGH 69

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 64.7 bits (159), Expect = 2e-14
 Identities = 26/90 (28%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
               + LH AAQYGH      LL        R     T L +AA  G    V+ L+  H 
Sbjct: 32  WLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHG 90

Query: 87  GLIQAYNARAQ--STLFPASPLHLASRNGH 114
             +   NA+     T      LH A+ + H
Sbjct: 91  ADV---NAKDMLKMT-----ALHWATEHNH 112

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 63.2 bits (155), Expect = 7e-14
 Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           TK + T LH AA  GH  +V  LL+H  D   ++    TAL  A ++   E V+ L++ +
Sbjct: 64  TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK-Y 122

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
              +   +   +      +   ++  NG+
Sbjct: 123 GADVHTQSKFCK------TAFDISIDNGN 145

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 60.9 bits (149), Expect = 6e-13
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
               TALH A ++ H  VV  L+++  D   ++   +TA D++   G  +  + L
Sbjct: 98  MLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 58.6 bits (143), Expect = 4e-12
 Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 12/89 (13%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           D    L  AA+ G    V  L+ +    T  +    + L LAAQYG   T + L+R    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLR-AGV 58

Query: 88  LIQAYNARAQS--TLFPASPLHLASRNGH 114
                +AR +   T     PLH+A+  GH
Sbjct: 59  SR---DARTKVDRT-----PLHMAASEGH 79

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 15/92 (16%)

Query: 30  ETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTL------V 82
           E+ L  AA+      +S+LL    C+   R +  ETAL +AA Y  LE    L      +
Sbjct: 4   ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63

Query: 83  RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
              P   + Y  +        + LH+A  N +
Sbjct: 64  VFEPMTSELYEGQ--------TALHIAVINQN 87

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 3/106 (2%)

Query: 12  RDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 71
           R   +        L    E  L  AA  G   +V  L+EH  D   ++S   T L +   
Sbjct: 104 RATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILIL 163

Query: 72  YGRLETVDTLVR---THPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                    +     ++ G     +          +P  LA   G+
Sbjct: 164 QPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN 209

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 64.2 bits (157), Expect = 1e-13
 Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 19/104 (18%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH-----SCDPTIRNSRHETALDLAAQYGRLETVDT 80
               ETALH AA Y +      L+E          T      +TAL +A     +  V  
Sbjct: 34  GAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRA 93

Query: 81  LVRTHPGLIQAYNARAQSTLFPAS----------PLHLASRNGH 114
           L+      +   +ARA  ++F             PL  A+  G 
Sbjct: 94  LLA-RGASV---SARATGSVFHYRPHNLIYYGEHPLSFAACVGS 133

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.2 bits (126), Expect = 3e-09
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 20/102 (19%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-------------ETALDLAAQY 72
             + +TALH A    +  +V  LL      + R +               E  L  AA  
Sbjct: 72  LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACV 131

Query: 73  GRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
           G  E V  L+  H   I+A ++         + LH+     +
Sbjct: 132 GSEEIVRLLI-EHGADIRAQDSLGN------TVLHILILQPN 166

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 51.5 bits (124), Expect = 6e-09
 Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 10/67 (14%)

Query: 26  TKDNETALHCAAQYGHTPVVSQ----LLEH------SCDPTIRNSRHETALDLAAQYGRL 75
                T LH      +     Q    LL +           + N++  T   LA   G +
Sbjct: 151 DSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNI 210

Query: 76  ETVDTLV 82
                L+
Sbjct: 211 VMFQHLM 217

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 63.9 bits (157), Expect = 4e-14
 Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 24/97 (24%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRLETVDTLV--- 82
            + +  L  AA+ G    V +L    S +      R  T L  AA Y R+  V+ L+   
Sbjct: 6   SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG 65

Query: 83  -----RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                +   GL                PLH A   GH
Sbjct: 66  ADVHAKDKGGL---------------VPLHNACSYGH 87

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 62.4 bits (153), Expect = 2e-13
 Identities = 25/101 (24%), Positives = 30/101 (29%), Gaps = 33/101 (32%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
               T LH AA Y    VV  LL+H  D   ++      L  A  YG  E  + LV    
Sbjct: 40  GRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGA 99

Query: 83  ---------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                     T                    PLH A+  G 
Sbjct: 100 VVNVADLWKFT--------------------PLHEAAAKGK 120

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 57.8 bits (141), Expect = 1e-11
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
                T LH AA  G   +   LL+H  DPT +N    T LDL    G  +  D L 
Sbjct: 105 DLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLR 160

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 55.1 bits (134), Expect = 1e-10
 Identities = 17/57 (29%), Positives = 23/57 (40%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            K     LH A  YGH  V   L++H     + +    T L  AA  G+ E    L+
Sbjct: 72  DKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL 128

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.8 bits (97), Expect = 2e-05
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 14/60 (23%)

Query: 59  NSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQ----STLFPASPLHLASRNGH 114
           NS  +  L  AA+ G +ETV  L         + N R      ST     PLH A+    
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQ-----SVNCRDIEGRQST-----PLHFAAGYNR 54

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 64.3 bits (158), Expect = 6e-14
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 33/101 (32%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
             N T L  A   G    + +L+E+      ++    TAL  A +  RL   + L+    
Sbjct: 33  SYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGS 92

Query: 83  ---------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                    +T                    PL  +   G+
Sbjct: 93  NVNTKDFSGKT--------------------PLMWSIIFGY 113

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 62.8 bits (154), Expect = 2e-13
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 33/101 (32%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV---- 82
            +  TAL  A +     +  +LL    +   ++   +T L  +  +G  E    L+    
Sbjct: 66  IEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGA 125

Query: 83  ---------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                     T                    PL +AS+ G 
Sbjct: 126 NVNDRNLEGET--------------------PLIVASKYGR 146

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 61.3 bits (150), Expect = 8e-13
 Identities = 18/56 (32%), Positives = 28/56 (50%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            + ET L  A++YG + +V +LLE   D + R+    TA   A  +GR E +    
Sbjct: 132 LEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 61.3 bits (150), Expect = 9e-13
 Identities = 24/103 (23%), Positives = 35/103 (33%), Gaps = 35/103 (33%)

Query: 27  KDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV-- 82
           KD   +T L  +  +G++ +   LLEH  +   RN   ET L +A++YGR E V  L+  
Sbjct: 97  KDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL 156

Query: 83  -----------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
                       T                        A   G 
Sbjct: 157 GADISARDLTGLT--------------------AEASARIFGR 179

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 47.8 bits (115), Expect = 9e-08
 Identities = 17/90 (18%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           K+ E       +      +  L  +      R+S + T L +A   G    +D LV  + 
Sbjct: 6   KNGEIVEKIKDEKSINQNLDFLRNY------RDSYNRTPLMVACMLGMENAIDKLV-ENF 58

Query: 87  GLIQAYNARAQ--STLFPASPLHLASRNGH 114
             +     +    ST      L  A +N  
Sbjct: 59  DKL---EDKDIEGST-----ALIWAVKNNR 80

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 38.1 bits (90), Expect = 2e-04
 Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 2/27 (7%)

Query: 27  KDN--ETALHCAAQYGHTPVVSQLLEH 51
           +D    TA   A  +G   V+    E 
Sbjct: 163 RDLTGLTAEASARIFGRQEVIKIFTEV 189

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 62.4 bits (152), Expect = 3e-13
 Identities = 13/100 (13%), Positives = 25/100 (25%), Gaps = 16/100 (16%)

Query: 26  TKDNETALHCAAQYGHTPVVSQ------LLEHSCDPTIRNSRHETALDLAAQYGRLETVD 79
           TK+  T      Q G   +          LE   D T     ++  +        ++  +
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENE 131

Query: 80  TLVRTHPGLIQA---YNARAQS--TLFPASPLHLASRNGH 114
            +        Q+      + +   T      L    R   
Sbjct: 132 MIPLYKLIFSQSGLQLLIKDKWGLT-----ALEFVKRCQK 166

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 53.9 bits (130), Expect = 4e-10
 Identities = 7/64 (10%), Positives = 18/64 (28%), Gaps = 7/64 (10%)

Query: 27  KDNETALHCAAQYGH------TPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVD 79
           K  +  +               P+   +   S     I++    TAL+   +  +   + 
Sbjct: 112 KPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALK 171

Query: 80  TLVR 83
            +  
Sbjct: 172 MMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 10/92 (10%), Positives = 20/92 (21%), Gaps = 10/92 (10%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR---HETALDLAAQYGRLETVDTLVR 83
                 +  AA  G      +L E   +      +       L       R +    L+ 
Sbjct: 4   MSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN 63

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
                I++            +      + G  
Sbjct: 64  -KGADIKSRTKEGT------TLFFPLFQGGGN 88

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 50.8 bits (122), Expect = 6e-09
 Identities = 11/91 (12%), Positives = 19/91 (20%), Gaps = 15/91 (16%)

Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDT--LVRTHPGL 88
             L          +   L+    D   R     T      Q G  +   T  L +     
Sbjct: 44  DVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKI---F 100

Query: 89  IQA---YNARAQS--TLFPASPLHLASRNGH 114
           ++      A  +          +     N  
Sbjct: 101 LEKGADITALYKPYKI-----VVFKNIFNYF 126

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 4/34 (11%), Positives = 12/34 (35%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS 60
           K   TAL    +      +  + ++     ++ +
Sbjct: 152 KWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 61.2 bits (150), Expect = 3e-13
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           +   T L+ A  +GH  +V  LL++  D    ++   T L LAA  G LE  + L+  H 
Sbjct: 45  EYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL-KHG 103

Query: 87  GLIQAYNARAQ--STLFPASPLHLASRNGH 114
             +   NA+ +   T        ++  NG+
Sbjct: 104 ADV---NAQDKFGKT-----AFDISIGNGN 125

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 58.6 bits (143), Expect = 4e-12
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 11/89 (12%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           D    L  AA+ G    V  L+ +  D   ++    T L LA  +G LE V+ L++ +  
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLK-NGA 71

Query: 88  LIQAYNARAQ--STLFPASPLHLASRNGH 114
            +   NA      T     PLHLA+  GH
Sbjct: 72  DV---NAVDAIGFT-----PLHLAAFIGH 92

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 56.2 bits (137), Expect = 2e-11
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 27  KDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
            D    T LH AA  GH  +   LL+H  D   ++   +TA D++   G  +  + L
Sbjct: 76  VDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.1 bits (90), Expect = 1e-04
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHS 52
           K  +TA   +   G+  +   L + +
Sbjct: 111 KFGKTAFDISIGNGNEDLAEILQKLN 136

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 63.0 bits (153), Expect = 3e-13
 Identities = 25/90 (27%), Positives = 37/90 (41%), Gaps = 7/90 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            +D+ TALH A   GHT +V  LL+       ++    + L +AA  G  E V  L+   
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALL-VK 95

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGHR 115
              + A N          +PLH A+     
Sbjct: 96  GAHVNAVNQNGC------TPLHYAASKNRH 119

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 58.7 bits (142), Expect = 1e-11
 Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 7/90 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
                + LH AA  G   +V  LL         N    T L  AA   R E    L+   
Sbjct: 70  DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLL-EG 128

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGHR 115
                A +          + +H A+  G+ 
Sbjct: 129 GANPDAKDHYDA------TAMHRAAAKGNL 152

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.0 bits (135), Expect = 1e-10
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 23/94 (24%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV----- 82
            N    + A       +  ++L      T  +    TAL  A   G  E V+ L+     
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 83  ---RTHPGLIQAYNARAQSTLFPASPLHLASRNG 113
              +   G                SPLH+A+  G
Sbjct: 66  VNDKDDAGW---------------SPLHIAASAG 84

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
              + TA+H AA  G+  +V  LL +     I+++   T L LA    R+E    LV T 
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLV-TQ 194

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRN 112
              I   N   +      +PL +A   
Sbjct: 195 GASIYIENKEEK------TPLQVAKGG 215

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 62.7 bits (153), Expect = 4e-13
 Identities = 20/90 (22%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           ++  TALH A    +  +V  L+    +    +S   T L  AA          LV  H 
Sbjct: 52  EEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV-QHG 110

Query: 87  GLIQAYNARAQSTLFPASPLHLAS--RNGH 114
             I A      +T             R G+
Sbjct: 111 AAIFATTLSDGAT-----AFEKCDPYREGY 135

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG 87
           +    L  AA  G   VV Q ++   DP+  N    TAL  A        VD L+     
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLIT-AGA 78

Query: 88  LIQAYNARAQSTLFPASPLHLASRNGH 114
            + + ++         +PLH A+    
Sbjct: 79  NVNSPDSHGW------TPLHCAASCND 99

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 58.4 bits (142), Expect = 2e-11
 Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 30/119 (25%)

Query: 27  KDNE--TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQY--GRLETVDTL 81
            D+   T LHCAA    T +   L++H             TA +    Y  G  +    L
Sbjct: 83  PDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYL 142

Query: 82  V--------RTHPGLIQAYNARAQSTL-----------------FPASPLHLASRNGHR 115
                         +   ++  A+                       +    A+ +G  
Sbjct: 143 ADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQE 201

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 78
                AL   +       +S     S     R+   ET    AA +G+   V
Sbjct: 154 SGAVYALWDYSA-EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 36.9 bits (86), Expect = 7e-04
 Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 11/62 (17%)

Query: 17  ETEDELLML--------TKDN--ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETAL 66
           E  DEL            +D   ET    AA +G    V +       P ++  R +   
Sbjct: 166 EFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYF-GLFPRVKPQRSKVKH 224

Query: 67  DL 68
             
Sbjct: 225 HH 226

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 13/58 (22%), Positives = 24/58 (41%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
                +AL      G   + ++L        I N +  T L LAA+ G++E    +++
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.9 bits (140), Expect = 3e-11
 Identities = 21/120 (17%), Positives = 31/120 (25%), Gaps = 22/120 (18%)

Query: 12  RDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEH---SCDPTIRNSRHETALDL 68
           R      +          E  L  AA      VV+ LLE+          +S   T L  
Sbjct: 119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHA 178

Query: 69  AAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPAS--------------PLHLASRNGH 114
                     ++       +I  Y+   Q                     PL LA++ G 
Sbjct: 179 LVMIADNSPENS-----ALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGK 233

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.5 bits (139), Expect = 4e-11
 Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 28/112 (25%)

Query: 27  KDNETALHCAA---QYGHTPVVSQLLEHSCDP-----------TIRNSRHETALDLAAQY 72
              +T L  A    Q G    +  LL+   D            T    +  +AL +A + 
Sbjct: 41  STGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK 100

Query: 73  GRLETVDTLVRTHPGLIQAYNARAQSTLFPAS----------PLHLASRNGH 114
             L+ V  LV     +    + RA    F             PL LA+    
Sbjct: 101 RSLQCVKLLVENGADV----HLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 25/113 (22%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-------------ETALDLAAQYG 73
               +ALH A +      V  L+E+  D  +R                 E  L LAA   
Sbjct: 88  YQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147

Query: 74  RLETVDTLVRTHPGL--IQAYNARAQSTLFPAS----------PLHLASRNGH 114
           + + V  L+        ++A ++   + L               L +   +G 
Sbjct: 148 QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL 200

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 45.2 bits (107), Expect = 9e-07
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 15/101 (14%)

Query: 29  NETALHCAAQYGHTPVVSQLLEH--------SCDPTIRNSRHETALDLAA---QYGRLET 77
           +   L      G    ++ LLE+        +       S  +T L  A    Q G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 78  VDTLVRTHP---GLIQAYNARAQSTLFP-ASPLHLASRNGH 114
           +  L++            NA+     +   S LH+A     
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRS 102

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 6/30 (20%), Positives = 10/30 (33%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDP 55
                T L  AA+ G   +   +L+     
Sbjct: 218 NHQGLTPLKLAAKEGKIEIFRHILQREFSG 247

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 60.2 bits (146), Expect = 5e-12
 Identities = 22/97 (22%), Positives = 32/97 (32%), Gaps = 12/97 (12%)

Query: 30  ETALHCAAQYGHTPVVSQLLEH---SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           E  L  AA      +V  LL++     D + R+S   T L    +       +T   T  
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 87  G---LIQAYNARAQSTLFPA------SPLHLASRNGH 114
               LI          L         +PL LA+ +G 
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.9 bits (140), Expect = 4e-11
 Identities = 20/111 (18%), Positives = 34/111 (30%), Gaps = 23/111 (20%)

Query: 26  TKDNETALHCA---AQYGHTPVVSQLLEHSCD-----------PTIRNSRHETALDLAAQ 71
            +  +T L  A      G    ++ LL+ +              T    + +TAL +A +
Sbjct: 51  PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110

Query: 72  YGRLETVDTLV--------RTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
              +  V  LV          +    +    R     F   PL LA+    
Sbjct: 111 RRNMTLVTLLVENGADVQAAANGDFFKKTKGRP-GFYFGELPLSLAACTNQ 160

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.1 bits (138), Expect = 6e-11
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 18/99 (18%)

Query: 30  ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH--------------ETALDLAAQYGRL 75
           +TALH A +  +  +V+ L+E+  D     +                E  L LAA   +L
Sbjct: 102 QTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161

Query: 76  ETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
             V  L++       A +  A+ +    + LH       
Sbjct: 162 AIVKFLLQN--SWQPA-DISARDS-VGNTVLHALVEVAD 196

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.5 bits (126), Expect = 3e-09
 Identities = 16/106 (15%), Positives = 27/106 (25%), Gaps = 30/106 (28%)

Query: 26  TKDNETALHCAAQYGHTPVVS----------------QLLEHSCDPTIRNSRHETALDLA 69
                T LH   +     V +                +L        I N +  T L LA
Sbjct: 181 DSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240

Query: 70  AQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
           A  G++  +  ++                        H A+ + H 
Sbjct: 241 ASSGKIGVLAYIL----------QREIHE----PECRHAAAHHHHH 272

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 13/72 (18%), Positives = 23/72 (31%), Gaps = 8/72 (11%)

Query: 2   SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR 61
           S YN +      +    + E +   +   T L  AA  G   V++ +L+           
Sbjct: 207 SMYNEILILGAKLHPTLKLEEIT-NRKGLTPLALAASSGKIGVLAYILQREIH------- 258

Query: 62  HETALDLAAQYG 73
                  AA + 
Sbjct: 259 EPECRHAAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 15/101 (14%), Positives = 32/101 (31%), Gaps = 15/101 (14%)

Query: 29  NETALHCAAQYGHTPVVSQLLE-------HSCDPTIRNSRH-ETALDLA---AQYGRLET 77
           +  ++  A    +   +  LL           D   ++    +T L  A      G+ +T
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 78  VDTLVRTHPGLIQA---YNARAQSTLFP-ASPLHLASRNGH 114
           +  L+             NA    + +   + LH+A    +
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRN 113

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 58.1 bits (140), Expect = 4e-11
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 71
            + +T L+ AA+ G+  +V  LL++  DP I N      +D  A 
Sbjct: 281 SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAG 325

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 56.6 bits (136), Expect = 1e-10
 Identities = 13/92 (14%), Positives = 30/92 (32%), Gaps = 9/92 (9%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG---RLETVDTLVR 83
           +   T LH      +  +V  L++H  +    ++  E+ L  A +        T + L+ 
Sbjct: 129 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 188

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHR 115
                +   ++  +      + LH        
Sbjct: 189 YLYPCLILEDSMNR------TILHHIIITSGM 214

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 14/103 (13%), Positives = 32/103 (31%), Gaps = 19/103 (18%)

Query: 27  KDNETALHCAAQ------------YGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 74
             N T LH                Y    ++  +++    P    +  + +        R
Sbjct: 199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER 258

Query: 75  LETVDTLVRTHPGLIQAYNARAQ--STLFPASPLHLASRNGHR 115
            +++   +     +    NA+     T      L++A+R G+ 
Sbjct: 259 KDSILENLDLKWIIANMLNAQDSNGDT-----CLNIAARLGNI 296

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 12/97 (12%)

Query: 30  ETALHCAAQYGHTPVVSQLLEH---SCDPTIRNSRHETALDLAAQYG-RLETVDTLVRTH 85
           E  L  AA      +V  L E+     D   ++SR  T L                V   
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 86  PGLIQAYNARAQSTLFPAS--------PLHLASRNGH 114
             L+    A+        +        PL +A++ G 
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 23/120 (19%), Positives = 36/120 (30%), Gaps = 29/120 (24%)

Query: 20  DELLMLTKDNETALHCAA---QYGHTPVVSQLLEHSCDPTI-----------RNSRHETA 65
           DE        +T L  A      G    +  LL+ +                   R +TA
Sbjct: 37  DEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTA 96

Query: 66  LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPAS-----------PLHLASRNGH 114
           L +A +      V+ LV      +   +A+A+   F              PL LA+    
Sbjct: 97  LHIAIERRCKHYVELLVE-KGADV---HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ 152

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 51.7 bits (124), Expect = 5e-09
 Identities = 23/99 (23%), Positives = 31/99 (31%), Gaps = 18/99 (18%)

Query: 30  ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH--------------ETALDLAAQYGRL 75
           +TALH A +      V  L+E   D   +                  E  L LAA   + 
Sbjct: 94  QTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP 153

Query: 76  ETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
             V  L     G  QA + R Q +    + LH       
Sbjct: 154 HIVHYLTEN--GHKQA-DLRRQDS-RGNTVLHALVAIAD 188

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 18/75 (24%)

Query: 27  KDNE--TALHCAAQYGH---------TPVVSQLLEH-------SCDPTIRNSRHETALDL 68
           +D+   T LH                T +   LL         +    + N+   + L +
Sbjct: 172 QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMM 231

Query: 69  AAQYGRLETVDTLVR 83
           AA+ G++     ++R
Sbjct: 232 AAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.1 bits (94), Expect = 6e-05
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 15/101 (14%)

Query: 29  NETALHCAAQYG----HTPVVSQLLEHSCDPTIRNSRH----ETALDLAA---QYGRLET 77
           N   L      G       ++S LL H    T    R     +T L  A      GR +T
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 78  VDTLVRTHPGLIQA---YNARAQSTLFP-ASPLHLASRNGH 114
           +  L+             N+  +   +   + LH+A     
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 37.5 bits (87), Expect = 5e-04
 Identities = 7/37 (18%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRH 62
            D  + L  AA+ G   +   ++     D    +  H
Sbjct: 223 NDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 55.0 bits (132), Expect = 4e-10
 Identities = 19/58 (32%), Positives = 24/58 (41%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
               D  TALH AA Y     +  LL+        N   ETALD+A +    E  + L
Sbjct: 221 AKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELL 278

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.8 bits (116), Expect = 6e-08
 Identities = 18/90 (20%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 28  DNETALHCAAQYGH---TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
             E  LH A +  +    P+V  ++++      + +   TAL  AA Y + + +  L++ 
Sbjct: 189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK- 247

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
              L+   N   +      + L +A +  H
Sbjct: 248 GRALVGTVNEAGE------TALDIARKKHH 271

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 54.2 bits (130), Expect = 6e-10
 Identities = 15/59 (25%), Positives = 20/59 (33%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
             T    TALH      +   +  LL       I N   ET LD+A +       + L 
Sbjct: 200 KQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 49.6 bits (118), Expect = 4e-08
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 10/90 (11%)

Query: 28  DNETALHCAAQYG---HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT 84
            +ETALH A +        +V  L+++S +   +  +  TAL         E +  L+R 
Sbjct: 168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLR- 226

Query: 85  HPGLIQAYNARAQSTLFPASPLHLASRNGH 114
               I+  N   +      +PL +A R  H
Sbjct: 227 GKASIEIANESGE------TPLDIAKRLKH 250

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 14/58 (24%), Positives = 20/58 (34%)

Query: 25  LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
                   LH A   GHT +    L+   D   R+S     L +A +    + V  L 
Sbjct: 264 ADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 10/91 (10%)

Query: 27  KDNETALHCA---AQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
              E  LH A   A     P+V  ++++      + +   TAL  AA Y + + +  L++
Sbjct: 169 APEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLK 228

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGH 114
               L+   N   +      + L +A +  H
Sbjct: 229 -GRALVGTVNEAGE------TALDIARKKHH 252

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 21/134 (15%), Positives = 41/134 (30%), Gaps = 42/134 (31%)

Query: 15  ETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR 74
           +    D ++++ K ++ +L              + +   + TI  S     L+L  +   
Sbjct: 398 DVIKSDVMVVVNKLHKYSL--------------VEKQPKESTI--SIPSIYLELKVK--- 438

Query: 75  LETVDTLVRTHPGLIQAYNARAQSTLFPASPL------------HLAS-RNGHRFYLQQK 121
              ++     H  ++  YN           P             HL +  +  R  L + 
Sbjct: 439 ---LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRM 495

Query: 122 VQSDFCSSKVTRRF 135
           V  DF       RF
Sbjct: 496 VFLDF-------RF 502

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.94
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.94
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.94
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.94
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.94
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.94
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.94
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.94
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.94
2pnn_A	273	Transient receptor potential cation channel subfa	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.94
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.93
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.93
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.93
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.93
2etb_A	256	Transient receptor potential cation channel subfam	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.93
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
2etb_A	256	Transient receptor potential cation channel subfam	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.93
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.92
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.92
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.92
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.91
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.91
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.91
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.9
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.84
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.82
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.8
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.72

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.2e-32  Score=166.38  Aligned_cols=124  Identities=26%  Similarity=0.317  Sum_probs=97.6

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      ..+-.+.++.+ .+.|+++|.+|..|.||||+|+..++.++++++++.|++++.++..|+||||+|+..|+.+++++|++
T Consensus        13 ~~G~~~~v~~L-l~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~   91 (169)
T 4gpm_A           13 ENGNKDRVKDL-IENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS   91 (169)
T ss_dssp             HTTCHHHHHHH-HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHH-HHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            33444455444 46678888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          84 THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .|+++       +.++..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        92 ~gadv-------n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G  136 (169)
T 4gpm_A           92 KGADV-------NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDG  136 (169)
T ss_dssp             TTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CcCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            88877       6677778888888888888888888888888888877766

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.98  E-value=1.3e-31  Score=162.94  Aligned_cols=116  Identities=24%  Similarity=0.267  Sum_probs=102.5

Q ss_pred             HHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Q psy2185           7 LKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP   86 (136)
Q Consensus         7 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~   86 (136)
                      ....+ ..+.+.|++++.+|..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++.|+
T Consensus        49 ~~~~~-~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ga  127 (169)
T 4gpm_A           49 HKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA  127 (169)
T ss_dssp             CHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CHHHH-HHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            33444 44557899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcch
Q psy2185          87 GLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSK  130 (136)
Q Consensus        87 ~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~  130 (136)
                      ++       ..++..|+||||+|++.|+.+++++|+++|++++-
T Consensus       128 d~-------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          128 DV-------NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             Cc-------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            98       78899999999999999999999999999999864

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=9.5e-30  Score=155.82  Aligned_cols=127  Identities=21%  Similarity=0.186  Sum_probs=118.0

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |+..+..+.++.++...+.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus        12 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   91 (179)
T 3f6q_A           12 QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL   91 (179)
T ss_dssp             HHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34455667788888888889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++.|+++       ...+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        92 l~~g~~~-------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  138 (179)
T 3f6q_A           92 LQYKADI-------NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYG  138 (179)
T ss_dssp             HHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTS
T ss_pred             HHcCCCC-------CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCC
Confidence            9999998       7788899999999999999999999999999999998876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.97  E-value=1.3e-29  Score=153.29  Aligned_cols=127  Identities=23%  Similarity=0.248  Sum_probs=117.1

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |+..+..+.++.++...+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|
T Consensus        15 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   94 (165)
T 3twr_A           15 AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL   94 (165)
T ss_dssp             HHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHH
Confidence            34455667778888778888888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++.++++       ...+..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        95 l~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  141 (165)
T 3twr_A           95 VKHGAVV-------NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDG  141 (165)
T ss_dssp             HHTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HhCCCCC-------CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence            9999998       7788899999999999999999999999999999998876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=3.1e-29  Score=152.56  Aligned_cols=127  Identities=19%  Similarity=0.163  Sum_probs=114.4

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |+..+..+.++.++...+..++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|
T Consensus         9 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   88 (172)
T 3v30_A            9 LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLL   88 (172)
T ss_dssp             HHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHH
Confidence            34455566777787776666889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++.++++       ...+..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        89 l~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  135 (172)
T 3v30_A           89 LERDVDI-------NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG  135 (172)
T ss_dssp             HTTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            9999987       6788899999999999999999999999999999988776

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=5.8e-29  Score=151.11  Aligned_cols=125  Identities=23%  Similarity=0.253  Sum_probs=113.5

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.++ +.|.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+
T Consensus        22 ~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll  100 (169)
T 2y1l_E           22 ARAGRDDEVRILM-ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL  100 (169)
T ss_dssp             HHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHH-HCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3444455555554 668999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.++++       ...+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       101 ~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  146 (169)
T 2y1l_E          101 KNGADV-------NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFG  146 (169)
T ss_dssp             HTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            999988       6788899999999999999999999999999999988776

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=7e-30  Score=153.38  Aligned_cols=125  Identities=18%  Similarity=0.154  Sum_probs=104.4

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCC-HHHHHHHcCCHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHET-ALDLAAQYGRLETVDT   80 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t-~l~~a~~~~~~~~~~~   80 (136)
                      |+..+..+.++.++ +.|.+++..+..|.||||+|+ .|+.+++++|+++|++++.++..|.| |||+|+..|+.+++++
T Consensus        19 A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~   96 (156)
T 1bi7_B           19 AAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV   96 (156)
T ss_dssp             HHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHH
Confidence            34445556665655 568999999999999999985 99999999999999999999999999 9999999999999999


Q ss_pred             HHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          81 LVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        81 Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |++.|+++       ...+..|+||||+|+..|+.+++++|+++|++++.++..|
T Consensus        97 Ll~~ga~~-------~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  144 (156)
T 1bi7_B           97 LHRAGARL-------DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHAR  144 (156)
T ss_dssp             HHHHTCCS-------SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC----------
T ss_pred             HHHcCCCC-------cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCc
Confidence            99999998       7788899999999999999999999999999999998776

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=9.9e-29  Score=149.66  Aligned_cols=125  Identities=22%  Similarity=0.177  Sum_probs=113.4

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.++ +.+.+++..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|+
T Consensus        11 ~~~g~~~~v~~ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   89 (167)
T 3v31_A           11 AAQGEMLYLATRI-EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL   89 (167)
T ss_dssp             HHTTCHHHHHHHH-HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHH-HcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3444455665555 557889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.++++       ...+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        90 ~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  135 (167)
T 3v31_A           90 DCGVDV-------NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSG  135 (167)
T ss_dssp             HHTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HCCCCC-------CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            999988       6788899999999999999999999999999999998876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.96  E-value=1.1e-28  Score=145.24  Aligned_cols=109  Identities=26%  Similarity=0.301  Sum_probs=100.9

Q ss_pred             hhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccC
Q psy2185          19 EDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS   98 (136)
Q Consensus        19 ~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   98 (136)
                      |+++ .+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++.++++       ...
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~   72 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-------NTT   72 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-------cCc
Confidence            3455 67889999999999999999999999999999999999999999999999999999999999987       678


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          99 TLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        99 ~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        73 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  109 (137)
T 3c5r_A           73 GYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG  109 (137)
T ss_dssp             CGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            8889999999999999999999999999999999877

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.6e-28  Score=146.92  Aligned_cols=124  Identities=19%  Similarity=0.235  Sum_probs=110.3

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.++ +.+.+++ .+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+
T Consensus        10 ~~~g~~~~v~~Ll-~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   87 (153)
T 1awc_B           10 ARAGQDDEVRILM-ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL   87 (153)
T ss_dssp             HHHTCHHHHHHHH-HHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHH-HcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHH
Confidence            3444555565555 4566665 5788999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.|+++       ...+..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        88 ~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  133 (153)
T 1awc_B           88 KHGADV-------NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC  133 (153)
T ss_dssp             TTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HcCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence            999998       7788899999999999999999999999999999998776

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.96  E-value=3.1e-28  Score=134.50  Aligned_cols=93  Identities=34%  Similarity=0.464  Sum_probs=88.2

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHH
Q psy2185          28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH  107 (136)
Q Consensus        28 ~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~  107 (136)
                      +|+||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++.|+++       ..++..|+||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~t~l~   73 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-------NAKDKNGRTPLH   73 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CccCCCCCCHHH
Confidence            4899999999999999999999999999999999999999999999999999999999998       778889999999


Q ss_pred             HHHHcCcHHHHHHHHhCCCC
Q psy2185         108 LASRNGHRFYLQQKVQSDFC  127 (136)
Q Consensus       108 ~A~~~g~~~~~~~Ll~~g~~  127 (136)
                      +|+..|+.+++++|+++|++
T Consensus        74 ~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           74 LAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999985

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.8e-28  Score=151.55  Aligned_cols=122  Identities=17%  Similarity=0.150  Sum_probs=109.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Q psy2185           6 NLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH   85 (136)
Q Consensus         6 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~   85 (136)
                      +..+.++.+ .+.+.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++.+
T Consensus        46 g~~~~v~~L-l~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  124 (192)
T 2rfm_A           46 GMENAIDKL-VENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG  124 (192)
T ss_dssp             TCGGGHHHH-HHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCHHHHHHH-HHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence            334444444 4568889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          86 PGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +++       ...+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       125 ~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  167 (192)
T 2rfm_A          125 ANV-------NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTG  167 (192)
T ss_dssp             CCS-------SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTS
T ss_pred             CCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            988       7788899999999999999999999999999999988776

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=2.1e-28  Score=158.64  Aligned_cols=116  Identities=21%  Similarity=0.241  Sum_probs=82.1

Q ss_pred             HHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhc---------------------------------CCCCCccc
Q psy2185          13 DMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEH---------------------------------SCDPTIRN   59 (136)
Q Consensus        13 ~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~---------------------------------~~~~~~~~   59 (136)
                      .++...|+++|.+|..|+||||+|+..|+.+++++|++.                                 |++++.++
T Consensus        70 ~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d  149 (269)
T 4b93_B           70 AKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKD  149 (269)
T ss_dssp             -----CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCC
Confidence            344456666666666666666666666666666655554                                 45555566


Q ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          60 SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        60 ~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..|+||||+|+..|+.+++++|++.|+++       +..+..|+||||+|+..|+.+++++|+++|+|++.+|..|
T Consensus       150 ~~g~TpL~~A~~~g~~~~v~~Ll~~gadv-------n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G  218 (269)
T 4b93_B          150 LSGNTPLIYACSGGHHELVALLLQHGASI-------NASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQ  218 (269)
T ss_dssp             TTCCCHHHHHHHTTCGGGHHHHHHTTCCT-------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCCCCC-------CccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            66777777777777777777777777776       6677788888888888888888888888888888888776

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.96  E-value=7.6e-28  Score=141.48  Aligned_cols=115  Identities=19%  Similarity=0.207  Sum_probs=99.6

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.++ +.+.+++..|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+
T Consensus        22 ~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  100 (136)
T 2jab_A           22 ARAGQDDEVRILM-ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL  100 (136)
T ss_dssp             HHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHhCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3444455555554 568889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSD  125 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g  125 (136)
                      +.++++       ...+..|.||||+|+..|+.+++++|+++|
T Consensus       101 ~~g~~~-------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          101 KHGADV-------NAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HcCCCC-------cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999887       677888999999999999999999999876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=6.1e-29  Score=146.16  Aligned_cols=113  Identities=20%  Similarity=0.217  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCC-CCCHHHHHHHcCCHHHHHHHHHh
Q psy2185           6 NLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR-HETALDLAAQYGRLETVDTLVRT   84 (136)
Q Consensus         6 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~Ll~~   84 (136)
                      +..+.++.++ +.+.+++.++..|.||||+|+. ++.+++++|+++|++++.++.. |.||||+|+..|+.+++++|++.
T Consensus        23 ~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  100 (136)
T 1d9s_A           23 GQVETVRQLL-EAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA  100 (136)
T ss_dssp             TCHHHHHHHH-HTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCHHHHHHHH-HcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            3344444444 5567777777778888888887 8888888888878777777777 78888888888888888888877


Q ss_pred             CCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q psy2185          85 HPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFC  127 (136)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~  127 (136)
                      ++++       ...+..|+||||+|+..|+.+++++|+++|+|
T Consensus       101 ga~~-------~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          101 GARL-------DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             CCCC-------CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCC-------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            7776       56677778888888888888888888877765

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=1.9e-28  Score=158.80  Aligned_cols=116  Identities=13%  Similarity=0.120  Sum_probs=72.7

Q ss_pred             hhhhhhccCCchHHHHHHHcCCH-HHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhh-----
Q psy2185          20 DELLMLTKDNETALHCAAQYGHT-PVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN-----   93 (136)
Q Consensus        20 ~~~~~~~~~g~t~l~~a~~~g~~-~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~-----   93 (136)
                      ..++..+..+.|||++|+..+.. .++++|++.|++++.++..|+||||+|+..|+.+++++|++.++++.....     
T Consensus        43 ~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~  122 (269)
T 4b93_B           43 DTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVP  122 (269)
T ss_dssp             --------------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             ccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCc
Confidence            34667788999999999988776 478999999999999999999999999999999999999998876522111     


Q ss_pred             ---------------------hhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          94 ---------------------ARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        94 ---------------------~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                                           +.+..+..|+||||+|+..|+.+++++|+++|++++.++..|
T Consensus       123 l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g  185 (269)
T 4b93_B          123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKG  185 (269)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTS
T ss_pred             cccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCC
Confidence                                 234567889999999999999999999999999999888776

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=5.9e-28  Score=144.70  Aligned_cols=125  Identities=20%  Similarity=0.226  Sum_probs=111.4

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |+..+..+.++.++...+.+++..+..|.||||+ +..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus         9 A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   87 (156)
T 1bd8_A            9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL   87 (156)
T ss_dssp             HHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence            3445556677777777566889999999999999 999999999999999999999999999999999999999999999


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++.|+++       ...+..|+||||+|+..|+.+++++|+++ ++++.+|..|
T Consensus        88 l~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g  133 (156)
T 1bd8_A           88 VEHGADV-------NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARG  133 (156)
T ss_dssp             HHTTCCS-------CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTS
T ss_pred             HHcCCCC-------CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCC
Confidence            9999887       77888999999999999999999999999 9999888776

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=4.7e-28  Score=153.44  Aligned_cols=134  Identities=17%  Similarity=0.087  Sum_probs=113.1

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCC-----CcccCCCCCHHHHHHHcCCHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDP-----TIRNSRHETALDLAAQYGRLE   76 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~-----~~~~~~g~t~l~~a~~~~~~~   76 (136)
                      |+..+..+.++.++...+.+++.+|..|.||||+|+..|+.+++++|++.++++     +.++..|.||||+|+..|+.+
T Consensus        10 A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~   89 (232)
T 2rfa_A           10 AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVN   89 (232)
T ss_dssp             HHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHH
Confidence            445556677778887779999999999999999999999999999999998876     566778999999999999999


Q ss_pred             HHHHHHHhCCChhHhhh------hhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          77 TVDTLVRTHPGLIQAYN------ARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        77 ~~~~Ll~~~~~~~~~~~------~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++++|++.++++.....      .....+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        90 ~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  154 (232)
T 2rfa_A           90 LVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLG  154 (232)
T ss_dssp             HHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            99999999988722110      001123479999999999999999999999999999999877

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=1.3e-28  Score=144.72  Aligned_cols=109  Identities=20%  Similarity=0.173  Sum_probs=103.1

Q ss_pred             hhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccC
Q psy2185          19 EDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS   98 (136)
Q Consensus        19 ~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   98 (136)
                      +.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+. ++.+++++|++.++++       ...
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-------~~~   73 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-------NCA   73 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-------SCC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-------CCc
Confidence            35678889999999999999999999999999999999999999999999999 9999999999999998       778


Q ss_pred             CCC-CCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          99 TLF-PASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        99 ~~~-~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.. |+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        74 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  111 (136)
T 1d9s_A           74 DPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWG  111 (136)
T ss_dssp             BTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSS
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCC
Confidence            888 9999999999999999999999999999998876

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=5.4e-28  Score=145.62  Aligned_cols=119  Identities=18%  Similarity=0.221  Sum_probs=71.4

Q ss_pred             HHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185           8 KRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus         8 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      .+.++.++ +.+.+++..+..|.||||+|+. |+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.+++
T Consensus        18 ~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~   95 (162)
T 1ihb_A           18 LEQLTSLL-QNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD   95 (162)
T ss_dssp             HHHHHHHT-TSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHH-hCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            33343333 4455666666666666666666 666666666666666666666666666666666666666666666655


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCC-cchhhccC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFC-SSKVTRRF  135 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~-~~~~~~~g  135 (136)
                      +       ...+..|+||||+|+..|+.+++++|+++|++ ++.+|..|
T Consensus        96 ~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g  137 (162)
T 1ihb_A           96 V-------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG  137 (162)
T ss_dssp             T-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             C-------CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCC
Confidence            5       44555666666666666666666666666665 35555443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=9.1e-28  Score=154.16  Aligned_cols=124  Identities=15%  Similarity=0.111  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHh
Q psy2185           5 NNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT   84 (136)
Q Consensus         5 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   84 (136)
                      .+..+.++.++.....+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.
T Consensus       100 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  179 (253)
T 1yyh_A          100 ADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN  179 (253)
T ss_dssp             HTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            34445555555444446777777777777777777777777777777777777777788888888888888888888888


Q ss_pred             CCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          85 HPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |+++       ...+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       180 ga~~-------~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  223 (253)
T 1yyh_A          180 GANK-------DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD  223 (253)
T ss_dssp             TCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             CCCC-------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCC
Confidence            7776       5677788888888888888888888888888888887765

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=2.5e-27  Score=137.05  Aligned_cols=103  Identities=16%  Similarity=0.112  Sum_probs=95.8

Q ss_pred             ccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCH
Q psy2185          26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASP  105 (136)
Q Consensus        26 ~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~  105 (136)
                      +..|.||||+|+..|+.+++++|++.+++++.++..|+||||+|+..++.+++++|++.++++       ...+..|+||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~d~~g~tp   76 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-------NAPDKHHITP   76 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-------TCCCTTSCCH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CcCCCCCCCH
Confidence            457889999999999999999999999999999999999999999999999999999999987       7788899999


Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         106 LHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       106 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ||+|+..|+.+++++|+++|++++.+|..|
T Consensus        77 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  106 (123)
T 3aaa_C           77 LLSAVYEGHVSCVKLLLSKGADKTVKGPDG  106 (123)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            999999999999999999999999998876

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=3.6e-27  Score=136.37  Aligned_cols=117  Identities=30%  Similarity=0.369  Sum_probs=105.8

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.++ +.+.+++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+
T Consensus        10 ~~~~~~~~v~~Ll-~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll   88 (126)
T 1n0r_A           10 ARNGHLEVVKLLL-EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL   88 (126)
T ss_dssp             HHHTCHHHHHHHH-HHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCcHHHHHHHH-HcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHH
Confidence            3444455555554 568899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFC  127 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~  127 (136)
                      +.++++       ...+..|.|||++|+..|+.+++++|+++|+|
T Consensus        89 ~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           89 EAGADV-------NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HcCCCC-------cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999987       67888999999999999999999999999986

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=4.6e-27  Score=141.52  Aligned_cols=113  Identities=19%  Similarity=0.162  Sum_probs=101.3

Q ss_pred             HHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185           8 KRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus         8 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      .+.++ .+.+.+.+++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.+++
T Consensus        50 ~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  128 (162)
T 1ihb_A           50 PEIAR-RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS  128 (162)
T ss_dssp             HHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred             HHHHH-HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence            44444 44567899999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFC  127 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~  127 (136)
                      .      ....+..|.||||+|+..|+.+++++|+++|+|
T Consensus       129 ~------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          129 N------VGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             C------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             C------CCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            4      156778899999999999999999999999986

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=1.9e-27  Score=154.21  Aligned_cols=118  Identities=14%  Similarity=0.052  Sum_probs=105.0

Q ss_pred             HHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccC-CCCCHHHHHHHcCCHHHHHHHHHhCCChh
Q psy2185          11 SRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS-RHETALDLAAQYGRLETVDTLVRTHPGLI   89 (136)
Q Consensus        11 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~   89 (136)
                      ....+...+.+++..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|++.|+++ 
T Consensus       140 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~-  218 (282)
T 1oy3_D          140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-  218 (282)
T ss_dssp             ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             hhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-
Confidence            34455566788899999999999999999999999999999999999875 4999999999999999999999999998 


Q ss_pred             HhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          90 QAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        90 ~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                            ..++..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       219 ------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  258 (282)
T 1oy3_D          219 ------TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDK  258 (282)
T ss_dssp             ------TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC---
T ss_pred             ------cccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcc
Confidence                  7788999999999999999999999999999999999877

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.95  E-value=6.3e-28  Score=138.00  Aligned_cols=105  Identities=29%  Similarity=0.316  Sum_probs=99.9

Q ss_pred             hhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCC
Q psy2185          24 MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA  103 (136)
Q Consensus        24 ~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  103 (136)
                      .+|..|.||||+|+..|+.+++++|++.+++++.++..|.||||+|+..++.+++++|++.++++       ...+..|+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~d~~g~   76 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-------NARSKDGN   76 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-------TCCCTTCC
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-------cccCCCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999987       67888999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         104 SPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       104 t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ||||+|+..|+.+++++|+++|++++.++..|
T Consensus        77 tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~  108 (115)
T 2l6b_A           77 TPEHLAKKNGHHEIVKLLDAKGADVNARSWGS  108 (115)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCC
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCCCcCCccc
Confidence            99999999999999999999999999998765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=2e-28  Score=155.39  Aligned_cols=125  Identities=14%  Similarity=0.044  Sum_probs=105.4

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.++ +.|.+++..|..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+
T Consensus        29 ~~~g~~~~v~~Ll-~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll  107 (229)
T 2vge_A           29 ALTGELEVVQQAV-KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALV  107 (229)
T ss_dssp             HHHTCHHHHHHHH-HHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            3444455555554 678888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCC-CCCCCHHHHH--HHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          83 RTHPGLIQAYNARAQST-LFPASPLHLA--SRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~-~~~~t~l~~A--~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.|+++       ...+ ..|+||||+|  +..|+.+++++|+++|++++.+|..|
T Consensus       108 ~~ga~~-------~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~  156 (229)
T 2vge_A          108 QHGAAI-------FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGA  156 (229)
T ss_dssp             TTTCCT-------TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGE
T ss_pred             HcCCCc-------ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCc
Confidence            998887       4444 5899999999  88999999999999999988887654

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.95  E-value=3.3e-27  Score=156.96  Aligned_cols=126  Identities=20%  Similarity=0.198  Sum_probs=116.5

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.++...+.+++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+
T Consensus        32 ~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll  111 (351)
T 3utm_A           32 ARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLL  111 (351)
T ss_dssp             HHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHH
Confidence            44555667778888889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.++++       ...+..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus       112 ~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  157 (351)
T 3utm_A          112 KHGACV-------NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHG  157 (351)
T ss_dssp             HTTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HCCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCC
Confidence            999988       6788899999999999999999999999999999887655

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=4.4e-27  Score=148.08  Aligned_cols=121  Identities=16%  Similarity=0.111  Sum_probs=73.8

Q ss_pred             HHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185           8 KRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus         8 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      .+.++.++.....+++..+..|.||||+|+..++.+++++|++.+++++.++..|.||||+|+..++.+++++|++.+++
T Consensus        71 ~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~  150 (223)
T 2f8y_A           71 QGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN  150 (223)
T ss_dssp             HHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence            34444444433335555555666666666666666666666666666666666666666666666666666666666655


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +       ...+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       151 ~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  191 (223)
T 2f8y_A          151 K-------DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMD  191 (223)
T ss_dssp             T-------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             C-------CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccC
Confidence            5       4555666667777766666666676666666666665544

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=5.9e-27  Score=148.22  Aligned_cols=113  Identities=20%  Similarity=0.176  Sum_probs=78.4

Q ss_pred             hhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhh
Q psy2185          16 TETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR   95 (136)
Q Consensus        16 ~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~   95 (136)
                      .+.+.+++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.++++       
T Consensus        93 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------  165 (231)
T 3aji_A           93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAST-------  165 (231)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-------
T ss_pred             HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCc-------
Confidence            3455556666666666666666666666666666666666666666666666666666666666666666655       


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          96 AQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        96 ~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ...+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       166 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  205 (231)
T 3aji_A          166 NIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEE  205 (231)
T ss_dssp             CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCC
Confidence            5667778888888888888888888888888888887766

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.95  E-value=4.8e-27  Score=149.13  Aligned_cols=125  Identities=18%  Similarity=0.198  Sum_probs=104.4

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      ..+..+.++.++...+.+++..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|++
T Consensus        86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  165 (237)
T 3b7b_A           86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA  165 (237)
T ss_dssp             HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHT
T ss_pred             HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            34445556566555447788888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          84 THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .++++       ...+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       166 ~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g  210 (237)
T 3b7b_A          166 AKCDL-------HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEG  210 (237)
T ss_dssp             TTCCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTS
T ss_pred             cCCCC-------CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCC
Confidence            88887       6678889999999999999999999999999999988876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=1.7e-27  Score=144.78  Aligned_cols=124  Identities=23%  Similarity=0.130  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      ..+..+.++.+ .+.|.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++
T Consensus        45 ~~~~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  123 (172)
T 3v30_A           45 AFGEIETVRFL-LEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLA  123 (172)
T ss_dssp             HTTCHHHHHHH-HHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHH-HHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34444555444 47789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          84 THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .|+++       ...+..|.||||+|+..|+.+++++|+++|+++..++..|
T Consensus       124 ~ga~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~  168 (172)
T 3v30_A          124 RGADL-------TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVP  168 (172)
T ss_dssp             TTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC----
T ss_pred             cCCCc-------cccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCC
Confidence            99998       7788899999999999999999999999999887766544

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=4.8e-27  Score=145.84  Aligned_cols=121  Identities=16%  Similarity=0.229  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHh
Q psy2185           5 NNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT   84 (136)
Q Consensus         5 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   84 (136)
                      .+..+.++.++...+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.
T Consensus        15 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~   94 (201)
T 3hra_A           15 QRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH   94 (201)
T ss_dssp             TTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             hccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            34445556666666667777777777777777777777777777777777777777777777777777777777777743


Q ss_pred             -CCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCC-CCcchhh
Q psy2185          85 -HPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSD-FCSSKVT  132 (136)
Q Consensus        85 -~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g-~~~~~~~  132 (136)
                       +.++       ...+..|.||||+|+..|+.+++++|+++| ++++.+|
T Consensus        95 ~~~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  137 (201)
T 3hra_A           95 ATPDL-------NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN  137 (201)
T ss_dssp             SCCCT-------TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCC
T ss_pred             cCccc-------ccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCC
Confidence             3233       223333444444444444444444444433 3333333

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=4.9e-27  Score=148.26  Aligned_cols=122  Identities=19%  Similarity=0.133  Sum_probs=101.9

Q ss_pred             HHHHHHHHHhhhhh--hhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           6 NLKRKSRDMETETE--DELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         6 ~~~~~~~~ll~~~~--~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      +..+.++.++ +.+  .+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++
T Consensus        83 ~~~~~~~~Ll-~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  161 (228)
T 2dzn_A           83 GNLEVVKSLY-DRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  161 (228)
T ss_dssp             CCHHHHHHHH-SSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             CCHHHHHHHH-hCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            3344444444 445  7788888888999999999999999999998888888888889999999999999999999998


Q ss_pred             hC-CChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHH-hCCCCcchhhccC
Q psy2185          84 TH-PGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKV-QSDFCSSKVTRRF  135 (136)
Q Consensus        84 ~~-~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll-~~g~~~~~~~~~g  135 (136)
                      .+ .++       +..+..|+||||+|+..|+.+++++|+ ++|++++.+|..|
T Consensus       162 ~g~~~~-------~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g  208 (228)
T 2dzn_A          162 LGKSAV-------NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  208 (228)
T ss_dssp             TTCCCS-------CCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTS
T ss_pred             cCcccc-------cCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCC
Confidence            88 665       667888999999999999999999999 7899999988876

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=1.2e-26  Score=146.77  Aligned_cols=123  Identities=20%  Similarity=0.194  Sum_probs=71.7

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      +.+..+.+++++...+..++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++
T Consensus        15 ~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~   94 (231)
T 3aji_A           15 YSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV   94 (231)
T ss_dssp             HHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHH
Confidence            33444455555555555556666666666666666666666666666666666666666666666666666666666666


Q ss_pred             hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhc
Q psy2185          84 THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~  133 (136)
                      .++++       ...+..|.||||+|+..|+.+++++|+++|++++.++.
T Consensus        95 ~g~~~-------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~  137 (231)
T 3aji_A           95 KGAHV-------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH  137 (231)
T ss_dssp             TTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCCC-------CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC
Confidence            66555       33344444444444444444444444444444444443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=5.1e-27  Score=149.68  Aligned_cols=121  Identities=20%  Similarity=0.111  Sum_probs=89.5

Q ss_pred             HHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Q psy2185           6 NLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH   85 (136)
Q Consensus         6 ~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~   85 (136)
                      +..+.+ ..+.+.|.+++.. ..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.|
T Consensus        16 ~~~~~~-~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g   93 (239)
T 1ycs_B           16 NLRKTG-SERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFG   93 (239)
T ss_dssp             -----------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHT
T ss_pred             hhHHHH-HHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            333444 3445677777754 67889999999999999999999999999888889999999999999999999999998


Q ss_pred             CChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          86 PGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +++       +..+..|+||||+|+..|+.+++++|+++|++++.++..|
T Consensus        94 a~~-------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~  136 (239)
T 1ycs_B           94 VNV-------NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSD  136 (239)
T ss_dssp             CCT-------TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred             CCC-------CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCC
Confidence            887       6778889999999999999999999999999998887654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.94  E-value=3.4e-27  Score=144.45  Aligned_cols=123  Identities=16%  Similarity=0.216  Sum_probs=112.0

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHh
Q psy2185           5 NNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT   84 (136)
Q Consensus         5 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   84 (136)
                      .+..+.+ +++.+.+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.
T Consensus        49 ~~~~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  127 (179)
T 3f6q_A           49 EGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN  127 (179)
T ss_dssp             TTCHHHH-HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCcHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            3344455 444577899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          85 HPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |+++       ...+..|.|||++|+..++.+++++|+++|++++..+.++
T Consensus       128 ga~~-------~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          128 GALV-------SICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             TCCS-------SBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             CCCc-------chhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            9998       7889999999999999999999999999999998877654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=2.1e-26  Score=150.60  Aligned_cols=85  Identities=19%  Similarity=0.162  Sum_probs=65.6

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.++ +.|.+++..+..|.||||+||..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+
T Consensus        48 ~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll  126 (299)
T 1s70_B           48 CSSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI  126 (299)
T ss_dssp             HHHTCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHH-HcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3344445554444 567788888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhCCCh
Q psy2185          83 RTHPGL   88 (136)
Q Consensus        83 ~~~~~~   88 (136)
                      +.|+++
T Consensus       127 ~~g~~~  132 (299)
T 1s70_B          127 SQGAHV  132 (299)
T ss_dssp             HTTCCT
T ss_pred             hCCCCC
Confidence            877654

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=1.8e-26  Score=135.61  Aligned_cols=104  Identities=23%  Similarity=0.208  Sum_probs=97.2

Q ss_pred             hccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCC
Q psy2185          25 LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPAS  104 (136)
Q Consensus        25 ~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t  104 (136)
                      ....+.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++.++++       ...+..|.|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~d~~g~t   82 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-------NAVDAIGFT   82 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTCCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CcCCCCCCC
Confidence            3456889999999999999999999999999999999999999999999999999999999987       678889999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         105 PLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       105 ~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |||+|+..|+.+++++|+++|++++.+|..|
T Consensus        83 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  113 (136)
T 2jab_A           83 PLHLAAFIGHLEIAEVLLKHGADVNAQDKFG  113 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcCcCCCC
Confidence            9999999999999999999999999988776

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.94  E-value=1.8e-26  Score=149.60  Aligned_cols=64  Identities=25%  Similarity=0.259  Sum_probs=39.3

Q ss_pred             hhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Q psy2185          22 LLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH   85 (136)
Q Consensus        22 ~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~   85 (136)
                      ++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.+
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~  101 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR  101 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSC
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccC
Confidence            5556666666666666666666666666666666665555566665555555555555555543

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.94  E-value=1.9e-26  Score=146.48  Aligned_cols=120  Identities=19%  Similarity=0.112  Sum_probs=94.9

Q ss_pred             HHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCC------CCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           8 KRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCD------PTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         8 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~------~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      .+.+ +++.+.|++++..+..|.||||+|+..|+.+++++|++.+++      ++..+..|.||||+|+..|+.+++++|
T Consensus        58 ~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  136 (236)
T 1ikn_D           58 PEIA-EALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELL  136 (236)
T ss_dssp             HHHH-HCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3344 444567788888888888888888888888888888887765      345566788888888888888888888


Q ss_pred             HHhCCChhHhhhhhccCCC-CCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          82 VRTHPGLIQAYNARAQSTL-FPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~-~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++.|+++       ...+. .|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       137 l~~g~~~-------~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  184 (236)
T 1ikn_D          137 VSLGADV-------NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG  184 (236)
T ss_dssp             HHHTCCT-------TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTC
T ss_pred             HHcCCCC-------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCC
Confidence            8888877       55665 78899999999888889999998888888888766

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.94  E-value=2.3e-26  Score=152.62  Aligned_cols=127  Identities=17%  Similarity=0.150  Sum_probs=102.4

Q ss_pred             HHHHHHhhhhhhhhhh-hccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCC---HHHHHHHHHh
Q psy2185           9 RKSRDMETETEDELLM-LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR---LETVDTLVRT   84 (136)
Q Consensus         9 ~~~~~ll~~~~~~~~~-~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~Ll~~   84 (136)
                      ..+..++.+.|++++. .|..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+   .++++.|++.
T Consensus       110 ~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~  189 (327)
T 1sw6_A          110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDY  189 (327)
T ss_dssp             HHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHh
Confidence            3455666788999999 89999999999999999999999999999999999999999999998776   3444444443


Q ss_pred             C-CCh----------hHh--------------------------------------------------------------
Q psy2185          85 H-PGL----------IQA--------------------------------------------------------------   91 (136)
Q Consensus        85 ~-~~~----------~~~--------------------------------------------------------------   91 (136)
                      + .++          .-.                                                              
T Consensus       190 ~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~  269 (327)
T 1sw6_A          190 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLK  269 (327)
T ss_dssp             HGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHH
T ss_pred             hhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHH
Confidence            2 100          000                                                              


Q ss_pred             ---hhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          92 ---YNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        92 ---~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                         ..+.+.++..|+||||+|++.|+.+++++|+++|++++.+|..|
T Consensus       270 ~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G  316 (327)
T 1sw6_A          270 WIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSG  316 (327)
T ss_dssp             HHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence               00245677899999999999999999999999999999999887

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=5.4e-26  Score=141.07  Aligned_cols=124  Identities=15%  Similarity=0.093  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHH-hcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      ..+..+.++. +.+.|++++..+..|.||||+|+..|+.+++++|+ ..+.+++.++..|.||||+|+..++.+++++|+
T Consensus        48 ~~~~~~~v~~-Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  126 (201)
T 3hra_A           48 HNNDIEIAKA-LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLL  126 (201)
T ss_dssp             HHTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHH-HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHH
Confidence            3444455544 45779999999999999999999999999999999 567789999999999999999999999999999


Q ss_pred             HhC-CChhHhhhhhccCCCCCCCHHHHHHHcCc-----HHHHHHHHhCCCCcchhhccC
Q psy2185          83 RTH-PGLIQAYNARAQSTLFPASPLHLASRNGH-----RFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        83 ~~~-~~~~~~~~~~~~~~~~~~t~l~~A~~~g~-----~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.+ .++       ...+..|+||||+|+..++     .+++++|+++|++++.+|..|
T Consensus       127 ~~g~~~~-------~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g  178 (201)
T 3hra_A          127 EDGREDI-------DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG  178 (201)
T ss_dssp             HHCCCCT-------TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HcCCCCc-------CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCC
Confidence            998 666       6788899999999999988     899999999999999998876

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=4.1e-26  Score=145.01  Aligned_cols=108  Identities=25%  Similarity=0.177  Sum_probs=80.3

Q ss_pred             hhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCccc-CCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCC
Q psy2185          21 ELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST   99 (136)
Q Consensus        21 ~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   99 (136)
                      +++..+..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++.|+++       ...+
T Consensus       108 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~~  180 (241)
T 1k1a_A          108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV-------NAQM  180 (241)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCBC
T ss_pred             cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCcC
Confidence            556666667777777777777777777777777776666 56777777777777777777777777666       5667


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         100 LFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       100 ~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       181 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  216 (241)
T 1k1a_A          181 YSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHN  216 (241)
T ss_dssp             TTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCC
Confidence            778888888888888888888888888888777665

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=1.8e-26  Score=148.14  Aligned_cols=111  Identities=18%  Similarity=0.137  Sum_probs=62.9

Q ss_pred             hhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCC-CCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhc
Q psy2185          18 TEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSC-DPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA   96 (136)
Q Consensus        18 ~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~   96 (136)
                      .|.+++..+..|.||||+|+..|+.+++++|++.+. +++.++..|.||||+|+..++.+++++|++.++++       .
T Consensus        79 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~  151 (253)
T 1yyh_A           79 ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-------N  151 (253)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCT-------T
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCC-------C
Confidence            344444444444444444444444444444444433 33444444444444444444444444444444443       4


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          97 QSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        97 ~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..+..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       152 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  190 (253)
T 1yyh_A          152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE  190 (253)
T ss_dssp             CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            566778888888888888888888888888888777665

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.94  E-value=6.1e-26  Score=142.87  Aligned_cols=123  Identities=17%  Similarity=0.134  Sum_probs=103.1

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCC-CCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           5 NNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSC-DPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         5 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      .+..+.++.++ +.+.+++..+..|.||||+|+..|+.+++++|++.+. +++.++..|.||||+|+..++.+++++|++
T Consensus        35 ~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  113 (223)
T 2f8y_A           35 YSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLIN  113 (223)
T ss_dssp             TTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHH
Confidence            33444554444 5678888888888999999999999999999888876 777888888899999999999999999998


Q ss_pred             hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          84 THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .++++       ...+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       114 ~g~~~-------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  158 (223)
T 2f8y_A          114 SHADV-------NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE  158 (223)
T ss_dssp             TTCCT-------TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             cCCCC-------cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            88887       6677889999999999999999999999999999888766

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=4.6e-26  Score=148.95  Aligned_cols=124  Identities=19%  Similarity=0.149  Sum_probs=108.6

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCC----------------------
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR----------------------   61 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~----------------------   61 (136)
                      ..+..+.++ ++.+.|++++..+..|.||||+|+..|+.+++++|+++|++++..+..                      
T Consensus        82 ~~g~~~~v~-~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~  160 (299)
T 1s70_B           82 IDDNVDMVK-FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (299)
T ss_dssp             HTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             HcCCHHHHH-HHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence            344445554 445689999999999999999999999999999999999999888754                      


Q ss_pred             --------------------------------------CCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCC
Q psy2185          62 --------------------------------------HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA  103 (136)
Q Consensus        62 --------------------------------------g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  103 (136)
                                                            |.||||+|+..|+.+++++|++.|+++       +..+..|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-------~~~d~~g~  233 (299)
T 1s70_B          161 RQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-------NIKDYDGW  233 (299)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-------TCCCTTCC
T ss_pred             hcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-------CCcCCCCC
Confidence                                                  557788888899999999999999888       77888999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         104 SPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       104 t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       234 tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g  265 (299)
T 1s70_B          234 TPLHAAAHWGKEEACRILVENLCDMEAVNKVG  265 (299)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            99999999999999999999999999999877

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=3e-26  Score=141.57  Aligned_cols=110  Identities=15%  Similarity=0.053  Sum_probs=103.6

Q ss_pred             hhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccC
Q psy2185          19 EDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQS   98 (136)
Q Consensus        19 ~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~   98 (136)
                      ...++.+|..|.||||+|+..|+.+++++|++.+++++.++..|.||||+|+..++.+++++|++.++++       ...
T Consensus        25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-------~~~   97 (192)
T 2rfm_A           25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-------NTK   97 (192)
T ss_dssp             HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-------TCC
T ss_pred             HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-------CCC
Confidence            3456788999999999999999999999999999999999999999999999999999999999999987       678


Q ss_pred             CCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          99 TLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        99 ~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus        98 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  134 (192)
T 2rfm_A           98 DFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG  134 (192)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTC
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            8899999999999999999999999999999998776

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=4.3e-26  Score=147.67  Aligned_cols=124  Identities=17%  Similarity=0.108  Sum_probs=113.6

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCC----HHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGH----TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV   78 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~----~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~   78 (136)
                      +..+..+.++.++...+.+++..+..|.||||+|+..++    .+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus       156 ~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v  235 (285)
T 1wdy_A          156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV  235 (285)
T ss_dssp             HHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence            445556777777777799999999999999999999999    9999999999999999999999999999999999999


Q ss_pred             HHHHH-hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhc
Q psy2185          79 DTLVR-THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus        79 ~~Ll~-~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~  133 (136)
                      ++|++ .+.++       ...+..|.||||+|++.|+.+++++|+++|++++.+|.
T Consensus       236 ~~Ll~~~g~~~-------~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          236 QRLLEQEHIEI-------NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHSSSCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHhccCCCc-------cccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence            99999 78887       77888999999999999999999999999999998873

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=2.7e-26  Score=157.08  Aligned_cols=121  Identities=23%  Similarity=0.286  Sum_probs=99.3

Q ss_pred             HHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Q psy2185           7 LKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP   86 (136)
Q Consensus         7 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~   86 (136)
                      ..+.++ ++.+.+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|+
T Consensus       257 ~~~~v~-~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga  335 (437)
T 1n11_A          257 HAEMVA-LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQA  335 (437)
T ss_dssp             CHHHHH-HHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTC
T ss_pred             CHHHHH-HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCC
Confidence            334443 3445677777888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             ChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          87 GLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        87 ~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ++       +.++..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       336 d~-------n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g  377 (437)
T 1n11_A          336 DV-------NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG  377 (437)
T ss_dssp             CT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSS
T ss_pred             CC-------CCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCC
Confidence            87       6778889999999999999999999999999999888776

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.94  E-value=8e-26  Score=137.21  Aligned_cols=114  Identities=21%  Similarity=0.326  Sum_probs=102.8

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      ..+..+.++.+ .+.+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++
T Consensus        56 ~~~~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  134 (169)
T 2y1l_E           56 FNGHLEIVEVL-LKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLK  134 (169)
T ss_dssp             HTTCHHHHHHH-HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHH-HHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            33444555444 46789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q psy2185          84 THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSD  125 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g  125 (136)
                      .|+++       ...+..|.|||++|+..|+.+++++|+++|
T Consensus       135 ~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          135 NGADV-------NAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             TTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             cCCCC-------CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99998       678889999999999999999999999886

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.94  E-value=4.1e-27  Score=150.10  Aligned_cols=123  Identities=17%  Similarity=0.100  Sum_probs=108.9

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      ..+..+.++.+ .+.+.+++..|..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|++
T Consensus        46 ~~g~~~~v~~L-l~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  124 (239)
T 1ycs_B           46 LEGEFDLVQRI-IYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE  124 (239)
T ss_dssp             HHTCHHHHHHH-TSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHH-HHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34444555454 47788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChhHhhhhhccCCCCCC-CHHHHH--HHcCcHHHHHHHHhCCCCcchhhcc
Q psy2185          84 THPGLIQAYNARAQSTLFPA-SPLHLA--SRNGHRFYLQQKVQSDFCSSKVTRR  134 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~-t~l~~A--~~~g~~~~~~~Ll~~g~~~~~~~~~  134 (136)
                      .|+++       ...+..+. ||||+|  +..|+.+++++|+++|++++..++.
T Consensus       125 ~ga~~-------~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~  171 (239)
T 1ycs_B          125 SGAAV-------FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG  171 (239)
T ss_dssp             TTCCT-------TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGG
T ss_pred             cCCCc-------ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccc
Confidence            99998       66666666 999999  7889999999999999998887654

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.94  E-value=1.2e-25  Score=134.63  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=98.8

Q ss_pred             HHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185           8 KRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus         8 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      .+.+ ..+.+.|.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++. ++
T Consensus        48 ~~~v-~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~  125 (156)
T 1bd8_A           48 TAIA-LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD  125 (156)
T ss_dssp             HHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC
T ss_pred             HHHH-HHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC
Confidence            3344 444577999999999999999999999999999999999999999999999999999999999999999998 77


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQS  124 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~  124 (136)
                      +       ...+..|.||||+|+..|+.+++++|+++
T Consensus       126 ~-------~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          126 L-------HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             T-------TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             C-------CCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            6       67888999999999999999999999975

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.94  E-value=3.5e-26  Score=153.39  Aligned_cols=104  Identities=21%  Similarity=0.202  Sum_probs=76.1

Q ss_pred             hccCCchHHHHHHHcC--CHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC-----hhHhhhhhcc
Q psy2185          25 LTKDNETALHCAAQYG--HTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG-----LIQAYNARAQ   97 (136)
Q Consensus        25 ~~~~g~t~l~~a~~~g--~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~~~~~~   97 (136)
                      .+..|.||||+|+..|  +.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.+++     +       ..
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-------~~  206 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL-------DY  206 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCT-------TC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccc-------cc
Confidence            6667777777777777  77777777777777777777777777777777777777777777666     4       45


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          98 STLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        98 ~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .+..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       207 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g  244 (364)
T 3ljn_A          207 ANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEH  244 (364)
T ss_dssp             CCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTS
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            56667777777777777777777777777777776655

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.94  E-value=1.7e-26  Score=149.60  Aligned_cols=130  Identities=16%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhcc--------------CCchHHHHHHHcCCHHHHHHHHh---cCCCCCcccCCCCCHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTK--------------DNETALHCAAQYGHTPVVSQLLE---HSCDPTIRNSRHETAL   66 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~--------------~g~t~l~~a~~~g~~~~~~~ll~---~~~~~~~~~~~g~t~l   66 (136)
                      ..+..+.++ +|.+.|++++..+.              .|.||||+|+..|+.+++++|++   .|++++.++..|+|||
T Consensus       110 ~~g~~~~v~-~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpL  188 (273)
T 2pnn_A          110 ERRNMTLVT-LLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVL  188 (273)
T ss_dssp             HTTCHHHHH-HHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred             HcCCHHHHH-HHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHH
Confidence            344445554 44567999999987              79999999999999999999999   9999999999999999


Q ss_pred             HHHHHcCC---------HHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCC-Ccchhhcc
Q psy2185          67 DLAAQYGR---------LETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDF-CSSKVTRR  134 (136)
Q Consensus        67 ~~a~~~~~---------~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~  134 (136)
                      |+|+..++         .+++++|++.|+++..........+..|+||||+|+..|+.+++++|+++|+ |+......
T Consensus       189 h~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~  266 (273)
T 2pnn_A          189 HALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAA  266 (273)
T ss_dssp             HHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------
T ss_pred             HHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhh
Confidence            99999888         7999999999887722111112478899999999999999999999999999 78776654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.94  E-value=2.9e-26  Score=144.57  Aligned_cols=109  Identities=21%  Similarity=0.191  Sum_probs=51.6

Q ss_pred             hhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhc
Q psy2185          18 TEDELLMLTKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA   96 (136)
Q Consensus        18 ~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~   96 (136)
                      .+.+++..|..|.||||+||..|+.+++++|++. |++++.++..|.||||+|+..|+.+++++|++.|+++       .
T Consensus        95 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-------~  167 (222)
T 3ehr_A           95 NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART-------D  167 (222)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-------C
T ss_pred             CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------c
Confidence            4455555555555555555555555555555554 5555555555555555555555555555555555554       4


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhc
Q psy2185          97 QSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus        97 ~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~  133 (136)
                      ..+..|.|||++|+..|+.++++.|++.|++.+..+.
T Consensus       168 ~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~  204 (222)
T 3ehr_A          168 LRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA  204 (222)
T ss_dssp             CCCTTSCCHHHHCCSHHHHHHHC--------------
T ss_pred             cccCCCCCHHHHhcchhHHHHHHHHhccchhhhccch
Confidence            4455555555555555555555555555555544443

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=6.3e-26  Score=150.77  Aligned_cols=112  Identities=16%  Similarity=0.086  Sum_probs=97.4

Q ss_pred             HHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185           9 RKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus         9 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      +.+.++|.+.|++++.++..|.||||+|+..|+.+++++|+.. +++++.++..|+||||+|+..|+.+++++|++.|++
T Consensus       219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd  298 (337)
T 4g8k_A          219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS  298 (337)
T ss_dssp             HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            3455677788999999999999999999999999999999975 889999999999999999999999999999999988


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhh
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVT  132 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~  132 (136)
                      +            +..+|||+|++.|+.+++++|+++|+++|...
T Consensus       299 ~------------n~~~~L~~A~~~~~~~iv~~Ll~~GA~~d~~~  331 (337)
T 4g8k_A          299 T------------DCGDLVMTARRNYDHSLVKVLLSHGAKEDFHP  331 (337)
T ss_dssp             S------------TTCCHHHHHHHTTCHHHHHHHHHTTCCC----
T ss_pred             C------------CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCC
Confidence            7            24579999999999999999999999998753

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.94  E-value=2.8e-26  Score=138.59  Aligned_cols=114  Identities=19%  Similarity=0.151  Sum_probs=101.6

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      ..+..+.++. +.+.+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++
T Consensus        51 ~~~~~~~v~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  129 (165)
T 3twr_A           51 GYNRVSVVEY-LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ  129 (165)
T ss_dssp             HTTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcChHHHHHH-HHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3344455544 456789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCC
Q psy2185          84 THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDF  126 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~  126 (136)
                      .|+++       ...+..|.||||+|+. |+.+++++|+++|+
T Consensus       130 ~ga~~-------~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          130 HGADP-------TKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             TTCCT-------TCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             cCCCC-------cccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            99998       7788999999999877 89999999999886

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=4.1e-26  Score=140.20  Aligned_cols=102  Identities=23%  Similarity=0.138  Sum_probs=94.8

Q ss_pred             ccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCC-CCCCC
Q psy2185          26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST-LFPAS  104 (136)
Q Consensus        26 ~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~~~t  104 (136)
                      +..|.||||+|+..|+.+++++|++ +++++.++..|+||||+|+..|+.+++++|++.|+++       +..+ ..|+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------~~~~~~~g~t  112 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-------DHRDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCSSSSCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-------CcCCCCCCCC
Confidence            5678999999999999999999999 9999999999999999999999999999999999987       5555 78999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         105 PLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       105 ~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |||+|+..|+.+++++|+++|++++.+|..|
T Consensus       113 pL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  143 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVELGADIEVEDERG  143 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTS
T ss_pred             HHHHHHhcCcHHHHHHHHHcCCCCcCCCCCC
Confidence            9999999999999999999999999998876

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.6e-25  Score=129.33  Aligned_cols=101  Identities=32%  Similarity=0.404  Sum_probs=96.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHH
Q psy2185          28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH  107 (136)
Q Consensus        28 ~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~  107 (136)
                      +|.||||+|+..|+.+++++|++++++++..+..|.||||+|+..++.+++++|++.++++       ...+..|.||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~t~l~   73 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-------NAKDKNGRTPLH   73 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-------cccCCCCCcHHH
Confidence            4899999999999999999999999999999999999999999999999999999999987       677889999999


Q ss_pred             HHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         108 LASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       108 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +|+..|+.+++++|+++|++++.+|..|
T Consensus        74 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g  101 (126)
T 1n0r_A           74 LAARNGHLEVVKLLLEAGADVNAKDKNG  101 (126)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHcChHHHHHHHHHcCCCCcccCCCC
Confidence            9999999999999999999999988766

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=9.8e-26  Score=147.08  Aligned_cols=123  Identities=21%  Similarity=0.199  Sum_probs=92.1

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      ..+..+.++.++ +.+.+++.+|..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++
T Consensus        68 ~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  146 (285)
T 3d9h_A           68 IHGHQLSLRNLI-SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ  146 (285)
T ss_dssp             HTTCHHHHHHHH-HTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHH-HCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHH
Confidence            334445554444 5678888889999999999999999999999999999999888899999999999999999999999


Q ss_pred             hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          84 THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .++++.        .+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       147 ~g~~~~--------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g  190 (285)
T 3d9h_A          147 HGASVQ--------PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHL  190 (285)
T ss_dssp             TTCCSS--------CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred             CCCCCC--------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            887751        12235666666666666666666666666665555443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.94  E-value=1e-26  Score=146.62  Aligned_cols=107  Identities=19%  Similarity=0.145  Sum_probs=101.1

Q ss_pred             hhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHh-CCChhHhhhhhccCCC
Q psy2185          22 LLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT-HPGLIQAYNARAQSTL  100 (136)
Q Consensus        22 ~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~  100 (136)
                      ++..+..|.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++. ++++       +..+.
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-------~~~d~  138 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-------NQQNK  138 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-------CCCCT
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-------cccCC
Confidence            455678999999999999999999999999999999999999999999999999999999998 8887       77889


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         101 FPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       101 ~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       139 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  173 (222)
T 3ehr_A          139 LGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK  173 (222)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCC
Confidence            99999999999999999999999999999999876

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.93  E-value=2.3e-25  Score=141.08  Aligned_cols=124  Identities=19%  Similarity=0.146  Sum_probs=106.5

Q ss_pred             hhHHHHHHHHHhhhhhhhh-----hhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccC-------------CCCCH
Q psy2185           4 YNNLKRKSRDMETETEDEL-----LMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS-------------RHETA   65 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~-----~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-------------~g~t~   65 (136)
                      ..+..+.++.++ +.+.++     +..|..|.||||+|+..|+.+++++|+++|++++.++.             .|.||
T Consensus        46 ~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~  124 (232)
T 2rfa_A           46 LYDNLEAAMVLM-EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHP  124 (232)
T ss_dssp             HTTCHHHHHHHH-HHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSH
T ss_pred             HcCCHHHHHHHH-HcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCH
Confidence            344445555444 566665     56677999999999999999999999999999988765             79999


Q ss_pred             HHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHH----HHHHhCCCCc------chhhccC
Q psy2185          66 LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYL----QQKVQSDFCS------SKVTRRF  135 (136)
Q Consensus        66 l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~----~~Ll~~g~~~------~~~~~~g  135 (136)
                      ||+|+..|+.+++++|++.|+++       +..+..|+||||+|+..|+.+++    ++|+++|+++      +.+|..|
T Consensus       125 L~~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g  197 (232)
T 2rfa_A          125 LSFAACVGSEEIVRLLIEHGADI-------RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQG  197 (232)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTS
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCC
Confidence            99999999999999999999998       77889999999999999999988    9999999988      4677665

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.93  E-value=1.9e-25  Score=133.52  Aligned_cols=111  Identities=22%  Similarity=0.231  Sum_probs=100.3

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.+ .+.+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+
T Consensus        42 ~~~~~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  120 (153)
T 1awc_B           42 AQYGHFSTTEVL-LRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI  120 (153)
T ss_dssp             HHHTCHHHHHHH-HTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHH-HHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            334444555444 5788999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHH
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQK  121 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~L  121 (136)
                      +.|+++       ...+..|.||||+|+..|+.+++++|
T Consensus       121 ~~ga~~-------~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          121 KYGADV-------HTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HcCCCc-------cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999998       77888999999999999999999987

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.93  E-value=1.9e-25  Score=140.92  Aligned_cols=103  Identities=19%  Similarity=0.168  Sum_probs=51.7

Q ss_pred             ccCCchHHHHHHHcCCHHHHHHHHhcC--CCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCC
Q psy2185          26 TKDNETALHCAAQYGHTPVVSQLLEHS--CDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA  103 (136)
Q Consensus        26 ~~~g~t~l~~a~~~g~~~~~~~ll~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  103 (136)
                      +..|.||||+|+..|+.+++++|++.|  ++++.++..|.||||+|+..++.+++++|++.|+++       ...+..|+
T Consensus        69 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-------~~~~~~g~  141 (228)
T 2dzn_A           69 DDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-------RIKDKFNQ  141 (228)
T ss_dssp             CTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-------CCCCTTSC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-------cccCCCCC
Confidence            344444444444444444444444444  344444444444444444444444444444444443       44455556


Q ss_pred             CHHHHHHHcCcHHHHHHHHhCC-CCcchhhccC
Q psy2185         104 SPLHLASRNGHRFYLQQKVQSD-FCSSKVTRRF  135 (136)
Q Consensus       104 t~l~~A~~~g~~~~~~~Ll~~g-~~~~~~~~~g  135 (136)
                      ||||+|+..|+.+++++|+++| ++++.+|..|
T Consensus       142 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g  174 (228)
T 2dzn_A          142 IPLHRAASVGSLKLIELLCGLGKSAVNWQDKQG  174 (228)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTS
T ss_pred             CHHHHHHHcCCHHHHHHHHhcCcccccCcCCCC
Confidence            6666666666666666666655 5555555444

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.93  E-value=2.4e-25  Score=141.27  Aligned_cols=122  Identities=16%  Similarity=0.108  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHh
Q psy2185           5 NNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT   84 (136)
Q Consensus         5 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   84 (136)
                      .+..+.++.+ .+.|.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.
T Consensus        21 ~g~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~   99 (237)
T 3b7b_A           21 AGHVDICHML-VQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN   99 (237)
T ss_dssp             HTCHHHHHHH-HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cCcHHHHHHH-HHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence            3334444444 455777777777788888888888888888888888877777777778888888888888888888777


Q ss_pred             C-CChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhcc
Q psy2185          85 H-PGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRR  134 (136)
Q Consensus        85 ~-~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~  134 (136)
                      + .++       ...+..|.||||+|+..|+.+++++|+++|++++.++..
T Consensus       100 ~~~~~-------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~  143 (237)
T 3b7b_A          100 GQMDV-------NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNE  143 (237)
T ss_dssp             TCCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCc-------ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCC
Confidence            6 333       334444555555555555555555555555555554443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.93  E-value=7.6e-26  Score=145.27  Aligned_cols=116  Identities=17%  Similarity=0.093  Sum_probs=103.5

Q ss_pred             HHhhhhhhhhhhh-----------ccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCC-------------CCCHHHH
Q psy2185          13 DMETETEDELLML-----------TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSR-------------HETALDL   68 (136)
Q Consensus        13 ~ll~~~~~~~~~~-----------~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~-------------g~t~l~~   68 (136)
                      +++.+.+.+++..           |..|.||||+|+..|+.+++++|+++|++++.++..             |.||||+
T Consensus        63 ~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~  142 (256)
T 2etb_A           63 MPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSL  142 (256)
T ss_dssp             HHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHH
T ss_pred             HHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHH
Confidence            4445667776633           367999999999999999999999999999998876             9999999


Q ss_pred             HHHcCCHHHHHHHHH---hCCChhHhhhhhccCCCCCCCHHHHHHH--cCcHH-------HHHHHHhCCCCc-------c
Q psy2185          69 AAQYGRLETVDTLVR---THPGLIQAYNARAQSTLFPASPLHLASR--NGHRF-------YLQQKVQSDFCS-------S  129 (136)
Q Consensus        69 a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~~~~t~l~~A~~--~g~~~-------~~~~Ll~~g~~~-------~  129 (136)
                      |+..|+.+++++|++   .|+++       +..+..|+||||+|+.  .++.+       ++++|+++|+++       +
T Consensus       143 A~~~~~~~~v~~Ll~~~~~ga~~-------n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~  215 (256)
T 2etb_A          143 AACTKQWDVVTYLLENPHQPASL-------EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE  215 (256)
T ss_dssp             HHHTTCHHHHHHHHHCSSCCCCT-------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred             HHHcCCHHHHHHHHhccccCCCc-------CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc
Confidence            999999999999999   89988       7888999999999999  78888       999999999999       8


Q ss_pred             hhhccC
Q psy2185         130 KVTRRF  135 (136)
Q Consensus       130 ~~~~~g  135 (136)
                      .+|..|
T Consensus       216 ~~d~~g  221 (256)
T 2etb_A          216 ISNHQG  221 (256)
T ss_dssp             CCCTTS
T ss_pred             ccCCCC
Confidence            888776

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=3.9e-26  Score=148.44  Aligned_cols=108  Identities=23%  Similarity=0.240  Sum_probs=84.3

Q ss_pred             hhhhhccCCchHHHHHHHcCCHHHHHHHHhcCC-CCCcc--------------------------------------cCC
Q psy2185          21 ELLMLTKDNETALHCAAQYGHTPVVSQLLEHSC-DPTIR--------------------------------------NSR   61 (136)
Q Consensus        21 ~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~-~~~~~--------------------------------------~~~   61 (136)
                      .+|..|..|.||||+|+..|+.+++++|++.|+ +++..                                      +..
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  182 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA  182 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCC
Confidence            367777777788888887787777777777765 44433                                      344


Q ss_pred             CCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHh-CCCCcchhhccC
Q psy2185          62 HETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQ-SDFCSSKVTRRF  135 (136)
Q Consensus        62 g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g  135 (136)
                      |+||||+|+..|+.+++++|++.|+++       +..+..|+||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus       183 g~tpLh~A~~~g~~~~v~~Ll~~gad~-------n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g  250 (276)
T 4hbd_A          183 GQTALMLAVSHGRVDVVKALLACEADV-------NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG  250 (276)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTS
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCC-------CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCC
Confidence            778888888888888888888888887       6677888888888888888888888888 788888888776

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.93  E-value=5.5e-26  Score=137.52  Aligned_cols=117  Identities=20%  Similarity=0.093  Sum_probs=105.5

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      ..+..+.++.+ .+.+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++
T Consensus        45 ~~~~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  123 (167)
T 3v31_A           45 AHGQIAVVEFL-LQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLE  123 (167)
T ss_dssp             HTTCHHHHHHH-HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HCCCHHHHHHH-HHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            33444555444 46689999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCc
Q psy2185          84 THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCS  128 (136)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~  128 (136)
                      .|+++       ...+..|.|||++|+..|+.+++++|++++.+.
T Consensus       124 ~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~  161 (167)
T 3v31_A          124 SGADP-------TIETDSGYNSMDLAVALGYRSVQQVIESHLLKL  161 (167)
T ss_dssp             TTCCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cCCCC-------CCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHH
Confidence            99998       778889999999999999999999999987664

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=6.5e-26  Score=147.94  Aligned_cols=106  Identities=15%  Similarity=0.042  Sum_probs=70.7

Q ss_pred             hhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCC
Q psy2185          21 ELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTL  100 (136)
Q Consensus        21 ~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~  100 (136)
                      +++.+|..|.||||+|+..|+.+++++|++.|++++.+  +|+||||+|+..|+.+++++|++.|+++       ...+.
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-------~~~d~   93 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-------SQFDD   93 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-------TCCCT
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCcCC
Confidence            35666666777777777777777777777666666555  3667777777767777777777666665       45566


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         101 FPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       101 ~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .|+||||+|+..|+.+++++|+++|++++.++..|
T Consensus        94 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g  128 (285)
T 3kea_A           94 KGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTG  128 (285)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSG
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCC
Confidence            66677777777666667777776666666666544

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.93  E-value=2.9e-25  Score=141.09  Aligned_cols=129  Identities=18%  Similarity=0.075  Sum_probs=85.7

Q ss_pred             HHHHHHHHhh---hhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           7 LKRKSRDMET---ETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         7 ~~~~~~~ll~---~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      ..+.++.++.   ..+.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++
T Consensus        21 ~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  100 (241)
T 1k1a_A           21 NLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLD  100 (241)
T ss_dssp             CHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            3344444443   4667777777778888888888888888888888888777777777888888888888888877777


Q ss_pred             hCC----ChhHhhh--------------------------hhccCC-CCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhh
Q psy2185          84 THP----GLIQAYN--------------------------ARAQST-LFPASPLHLASRNGHRFYLQQKVQSDFCSSKVT  132 (136)
Q Consensus        84 ~~~----~~~~~~~--------------------------~~~~~~-~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~  132 (136)
                      .+.    ++.....                          +....+ ..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       101 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  180 (241)
T 1k1a_A          101 SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM  180 (241)
T ss_dssp             HSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBC
T ss_pred             cCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            765    2200000                          012223 456677777777777777777777777776666


Q ss_pred             ccC
Q psy2185         133 RRF  135 (136)
Q Consensus       133 ~~g  135 (136)
                      ..|
T Consensus       181 ~~g  183 (241)
T 1k1a_A          181 YSG  183 (241)
T ss_dssp             TTS
T ss_pred             CCC
Confidence            554

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.6e-25  Score=142.09  Aligned_cols=113  Identities=21%  Similarity=0.098  Sum_probs=98.8

Q ss_pred             hhhhhhhhhh---ccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhh
Q psy2185          16 TETEDELLML---TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY   92 (136)
Q Consensus        16 ~~~~~~~~~~---~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~   92 (136)
                      .+.+.+++..   +..+.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++.|+++    
T Consensus         5 l~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~----   80 (229)
T 2vge_A            5 LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV----   80 (229)
T ss_dssp             -----CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT----
T ss_pred             hccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC----
Confidence            3455555543   456788999999999999999999999999999999999999999999999999999999998    


Q ss_pred             hhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhh-ccC
Q psy2185          93 NARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVT-RRF  135 (136)
Q Consensus        93 ~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~-~~g  135 (136)
                         +..+..|+||||+|+..|+.+++++|+++|++++.++ ..|
T Consensus        81 ---n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g  121 (229)
T 2vge_A           81 ---NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDG  121 (229)
T ss_dssp             ---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTT
T ss_pred             ---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCC
Confidence               7788899999999999999999999999999999886 344

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.93  E-value=6.5e-26  Score=145.57  Aligned_cols=118  Identities=16%  Similarity=0.039  Sum_probs=103.8

Q ss_pred             HHHHhhhhhhhhhh----hccCCchHHHHHHHc---CCHHHHHHHHhcCCCCCc-----------ccCCCCCHHHHHHHc
Q psy2185          11 SRDMETETEDELLM----LTKDNETALHCAAQY---GHTPVVSQLLEHSCDPTI-----------RNSRHETALDLAAQY   72 (136)
Q Consensus        11 ~~~ll~~~~~~~~~----~~~~g~t~l~~a~~~---g~~~~~~~ll~~~~~~~~-----------~~~~g~t~l~~a~~~   72 (136)
                      +.+.+...+.+++.    .|..|.||||+|+..   |+.+++++|++.|++++.           ++..|.||||+|+..
T Consensus        21 ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  100 (256)
T 2etb_A           21 LLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK  100 (256)
T ss_dssp             HHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT
T ss_pred             HHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc
Confidence            33455578889998    899999999999999   999999999999877653           236799999999999


Q ss_pred             CCHHHHHHHHHhCCChhHhhhhhccCCCC-------------CCCHHHHHHHcCcHHHHHHHHh---CCCCcchhhccC
Q psy2185          73 GRLETVDTLVRTHPGLIQAYNARAQSTLF-------------PASPLHLASRNGHRFYLQQKVQ---SDFCSSKVTRRF  135 (136)
Q Consensus        73 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~-------------~~t~l~~A~~~g~~~~~~~Ll~---~g~~~~~~~~~g  135 (136)
                      |+.+++++|++.|+++       ...+..             |.||||+|+..|+.+++++|++   +|++++.+|..|
T Consensus       101 g~~~~v~~Ll~~ga~~-------~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g  172 (256)
T 2etb_A          101 RSLQCVKLLVENGADV-------HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLG  172 (256)
T ss_dssp             TCHHHHHHHHHTTCCT-------TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTS
T ss_pred             CCHHHHHHHHHcCCCC-------CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCC
Confidence            9999999999999987       444443             9999999999999999999999   999999999877

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=3.6e-26  Score=137.12  Aligned_cols=106  Identities=18%  Similarity=0.097  Sum_probs=96.4

Q ss_pred             hhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCC
Q psy2185          22 LLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF  101 (136)
Q Consensus        22 ~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  101 (136)
                      .+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+ .|+.+++++|++.|+++       ...+..
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-------~~~d~~   76 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-------NCADPA   76 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-------CCCCTT
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-------CCcCCC
Confidence            3456778999999999999999999999999999999999999999986 89999999999999988       778889


Q ss_pred             CCC-HHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         102 PAS-PLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       102 ~~t-~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |+| |||+|+..|+.+++++|+++|++++.+|..|
T Consensus        77 g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g  111 (156)
T 1bi7_B           77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWG  111 (156)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCC
Confidence            999 9999999999999999999999999998776

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.93  E-value=3.4e-25  Score=144.53  Aligned_cols=111  Identities=18%  Similarity=0.123  Sum_probs=82.4

Q ss_pred             hhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhh
Q psy2185          16 TETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNAR   95 (136)
Q Consensus        16 ~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~   95 (136)
                      .+.+.+++..+ .|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.++++       
T Consensus       145 l~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-------  216 (285)
T 3d9h_A          145 LQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADV-------  216 (285)
T ss_dssp             HHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCT-------
T ss_pred             HHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCC-------
Confidence            34555554433 3667777777777777777777777777777777777777777777777777777777766       


Q ss_pred             ccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          96 AQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        96 ~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      . .+..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       217 ~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g  255 (285)
T 3d9h_A          217 N-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEG  255 (285)
T ss_dssp             T-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            2 36678899999999999999999999999988888776

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=1e-25  Score=144.11  Aligned_cols=102  Identities=23%  Similarity=0.138  Sum_probs=95.7

Q ss_pred             ccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCC-CCCCC
Q psy2185          26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST-LFPAS  104 (136)
Q Consensus        26 ~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~~~~t  104 (136)
                      +..|.||||+|+..|+.+++++|++ +++++.++..|+||||+|+..|+.+++++|++.|+++       +..+ ..|+|
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-------~~~~~~~g~t  113 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-------DHRDMRGGLT  113 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCSSSCCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-------CcCCCCCCCC
Confidence            3578999999999999999999999 9999999999999999999999999999999999998       5555 78999


Q ss_pred             HHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         105 PLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       105 ~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |||+|+..|+.+++++|+++|++++.+|..|
T Consensus       114 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g  144 (244)
T 3ui2_A          114 ALHMAAGYVRPEVVEALVELGADIEVEDERG  144 (244)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            9999999999999999999999999998876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=1.7e-25  Score=143.84  Aligned_cols=106  Identities=18%  Similarity=0.048  Sum_probs=96.6

Q ss_pred             hhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCccc--------------CCCCCHHHHHHHcCCHHHHHHHHH---hC
Q psy2185          23 LMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN--------------SRHETALDLAAQYGRLETVDTLVR---TH   85 (136)
Q Consensus        23 ~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~Ll~---~~   85 (136)
                      +..|..|.||||+|+..|+.+++++|+++|++++.++              ..|.||||+|+..|+.+++++|++   .|
T Consensus        87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           87 RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             CCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            3344589999999999999999999999999999988              589999999999999999999999   88


Q ss_pred             CChhHhhhhhccCCCCCCCHHHHHHHcCc---------HHHHHHHHhCCCCc-------chhhccC
Q psy2185          86 PGLIQAYNARAQSTLFPASPLHLASRNGH---------RFYLQQKVQSDFCS-------SKVTRRF  135 (136)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~t~l~~A~~~g~---------~~~~~~Ll~~g~~~-------~~~~~~g  135 (136)
                      +++       +..+..|+||||+|+..|+         .+++++|+++|+++       +.+|..|
T Consensus       167 a~~-------~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g  225 (260)
T 3jxi_A          167 ADL-------RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDG  225 (260)
T ss_dssp             CCT-------TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred             CCC-------cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCC
Confidence            888       7889999999999999887         69999999999998       6677766

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=1.1e-25  Score=151.04  Aligned_cols=118  Identities=12%  Similarity=0.050  Sum_probs=107.3

Q ss_pred             HHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCC-----CCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           7 LKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCD-----PTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         7 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~-----~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      ..+.+ ++|.+.|++++..|..|.||||+|+..|+.+++++|++.|++     ++..+..|.||||+|+..|+.+++++|
T Consensus       152 ~~~~v-~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  230 (364)
T 3ljn_A          152 YLEMI-KILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRF  230 (364)
T ss_dssp             GHHHH-HHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHH
T ss_pred             hHHHH-HHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHH
Confidence            34444 455567999999999999999999999999999999999988     999999999999999999999999999


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhh
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVT  132 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~  132 (136)
                      ++.|+++       +..+..|+||||+|+..|+.+++++|+++|++++..+
T Consensus       231 l~~gad~-------~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~  274 (364)
T 3ljn_A          231 VEMGIDV-------NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA  274 (364)
T ss_dssp             HTTTCCT-------TCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHT
T ss_pred             HHcCCCC-------CCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhc
Confidence            9999998       7888999999999999999999999999998875544

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=1.6e-25  Score=142.25  Aligned_cols=123  Identities=19%  Similarity=0.109  Sum_probs=106.1

Q ss_pred             hhHHHHHHHHHhhhhhh------hhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccC-CCCCHHHHHHHcCCHH
Q psy2185           4 YNNLKRKSRDMETETED------ELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS-RHETALDLAAQYGRLE   76 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~------~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~-~g~t~l~~a~~~~~~~   76 (136)
                      ..+..+.+..++ +.+.      .++..+..|.||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+
T Consensus        87 ~~~~~~~v~~Ll-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~  165 (236)
T 1ikn_D           87 EQGCLASVGVLT-QSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  165 (236)
T ss_dssp             HHTCHHHHHHHH-HSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHH-hcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            344445555555 4443      2677788999999999999999999999999999999987 9999999999999999


Q ss_pred             HHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcc--hhhcc
Q psy2185          77 TVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSS--KVTRR  134 (136)
Q Consensus        77 ~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~--~~~~~  134 (136)
                      ++++|++.|+++       ...+..|.||||+|+..|+.+++++|+++|+++.  ..+..
T Consensus       166 ~v~~Ll~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~  218 (236)
T 1ikn_D          166 LVSLLLKCGADV-------NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE  218 (236)
T ss_dssp             HHHHHHTTTCCS-------CCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCC
T ss_pred             HHHHHHHcCCCC-------CcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccc
Confidence            999999999998       7788999999999999999999999999999875  44443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.93  E-value=7.5e-25  Score=145.60  Aligned_cols=131  Identities=19%  Similarity=0.132  Sum_probs=103.5

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      ..+..+.++.+ .+.|.+++..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++
T Consensus        67 ~~g~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  145 (351)
T 3utm_A           67 GYNRVRIVQLL-LQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLS  145 (351)
T ss_dssp             HTTCHHHHHHH-HHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHH-HHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            34444555444 46789999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCChhHhh-----------------------------------------------------------------------
Q psy2185          84 THPGLIQAY-----------------------------------------------------------------------   92 (136)
Q Consensus        84 ~~~~~~~~~-----------------------------------------------------------------------   92 (136)
                      .|+++....                                                                       
T Consensus       146 ~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~  225 (351)
T 3utm_A          146 HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPK  225 (351)
T ss_dssp             TTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTT
T ss_pred             cCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCcc
Confidence            877642100                                                                       


Q ss_pred             ------------hhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          93 ------------NARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        93 ------------~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                                  .+.+..+..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       226 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g  280 (351)
T 3utm_A          226 RKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLG  280 (351)
T ss_dssp             HHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence                        0113456677888888888888888888888888888777665

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=7.3e-26  Score=145.56  Aligned_cols=126  Identities=20%  Similarity=0.164  Sum_probs=106.3

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhc--------------cCCchHHHHHHHcCCHHHHHHHHh---cCCCCCcccCCCCCHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLT--------------KDNETALHCAAQYGHTPVVSQLLE---HSCDPTIRNSRHETAL   66 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~--------------~~g~t~l~~a~~~g~~~~~~~ll~---~~~~~~~~~~~g~t~l   66 (136)
                      ..+..+.+ +++.+.|++++..+              ..|.||||+|+..|+.+++++|++   .|++++.++..|+|||
T Consensus       102 ~~g~~~~v-~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpL  180 (260)
T 3jxi_A          102 ERRCKHYV-ELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL  180 (260)
T ss_dssp             HTTCHHHH-HHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHH
T ss_pred             HcCCHHHH-HHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHH
Confidence            33444555 44556799999998              589999999999999999999999   9999999999999999


Q ss_pred             HHHHHcCC---------HHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcch
Q psy2185          67 DLAAQYGR---------LETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSK  130 (136)
Q Consensus        67 ~~a~~~~~---------~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~  130 (136)
                      |+|+..++         .+++++|++.|+++..........+..|+||||+|+..|+.+++++|+++|.++..
T Consensus       181 h~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~  253 (260)
T 3jxi_A          181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA  253 (260)
T ss_dssp             HHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCccc
Confidence            99999887         78999999998876322222245788999999999999999999999999987643

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=9.4e-25  Score=141.38  Aligned_cols=121  Identities=18%  Similarity=0.181  Sum_probs=108.5

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhh-ccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLML-TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~-~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      +..+..+.++.++ +.+.+++.. +..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|
T Consensus        13 ~~~g~~~~v~~Ll-~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L   91 (285)
T 1wdy_A           13 VQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF   91 (285)
T ss_dssp             HHTTCHHHHHHHH-HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHHH-HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            3444455565554 667888877 77899999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchh
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKV  131 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~  131 (136)
                      ++.|+++       ...+..|+||||+|+..|+.+++++|+++|++++.+
T Consensus        92 l~~g~~~-------~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  134 (285)
T 1wdy_A           92 LSKGADV-------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLR  134 (285)
T ss_dssp             HHTTCCT-------TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHcCCCC-------CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccc
Confidence            9999987       677889999999999999999999999999999876

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=4.2e-26  Score=140.64  Aligned_cols=107  Identities=8%  Similarity=-0.134  Sum_probs=87.9

Q ss_pred             hhhhc-cCCchHHHHHHHcCCH----HHHHHHHhcCCCCCcccCCCCCHHHHHHHcCC------HHHHHHHHHhCCChhH
Q psy2185          22 LLMLT-KDNETALHCAAQYGHT----PVVSQLLEHSCDPTIRNSRHETALDLAAQYGR------LETVDTLVRTHPGLIQ   90 (136)
Q Consensus        22 ~~~~~-~~g~t~l~~a~~~g~~----~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~------~~~~~~Ll~~~~~~~~   90 (136)
                      ++..+ ..|+||||+|+..++.    +++++|+++|++++.++..|+||||+|+..++      .+++++|++.|+++  
T Consensus        30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi--  107 (186)
T 3t8k_A           30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADI--  107 (186)
T ss_dssp             SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS--
T ss_pred             cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCC--
Confidence            45555 6788999999988875    48888899999998888889999999888876      57788899988888  


Q ss_pred             hhhhhccCCCCCC-CHHHHHHHcC-----cHHHHHHHHh-CCCCcchhhccC
Q psy2185          91 AYNARAQSTLFPA-SPLHLASRNG-----HRFYLQQKVQ-SDFCSSKVTRRF  135 (136)
Q Consensus        91 ~~~~~~~~~~~~~-t~l~~A~~~g-----~~~~~~~Ll~-~g~~~~~~~~~g  135 (136)
                           +.++..|+ ||||+|+..+     +.+++++|++ +|++++.+|..|
T Consensus       108 -----n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G  154 (186)
T 3t8k_A          108 -----TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWG  154 (186)
T ss_dssp             -----SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTS
T ss_pred             -----CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCC
Confidence                 77788888 8999988844     3568888888 899998888876

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=3.8e-25  Score=143.23  Aligned_cols=104  Identities=19%  Similarity=0.143  Sum_probs=95.8

Q ss_pred             hccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccC--------------CCCCHHHHHHHcCCHHHHHHHHH---hCCC
Q psy2185          25 LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNS--------------RHETALDLAAQYGRLETVDTLVR---THPG   87 (136)
Q Consensus        25 ~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~--------------~g~t~l~~a~~~~~~~~~~~Ll~---~~~~   87 (136)
                      .|..|.||||+|+..|+.+++++|+++|++++.++.              .|.||||+|+..|+.+++++|++   .|++
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad  176 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD  176 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC
Confidence            556899999999999999999999999999999886              79999999999999999999999   8898


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCc---------HHHHHHHHhCCCCcc-------hhhccC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGH---------RFYLQQKVQSDFCSS-------KVTRRF  135 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~---------~~~~~~Ll~~g~~~~-------~~~~~g  135 (136)
                      +       +..+..|+||||+|+..|+         .+++++|+++|++++       .+|..|
T Consensus       177 ~-------~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g  233 (273)
T 2pnn_A          177 I-------SARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG  233 (273)
T ss_dssp             T-------TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTS
T ss_pred             c-------eeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCC
Confidence            8       7788999999999999988         799999999999986       467665

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=7.1e-26  Score=147.78  Aligned_cols=70  Identities=14%  Similarity=0.124  Sum_probs=34.6

Q ss_pred             hhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCC-CCHHHHHHHcCCHHHHHHHHHhCC
Q psy2185          17 ETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRTHP   86 (136)
Q Consensus        17 ~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~Ll~~~~   86 (136)
                      +.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..| .||||+|+..|+.+++++|++.++
T Consensus        83 ~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~  153 (285)
T 3kea_A           83 FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP  153 (285)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             HCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCC
Confidence            3344444444455555555555555555555555555554444444 355555555555555555544443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.93  E-value=4.3e-25  Score=143.70  Aligned_cols=106  Identities=21%  Similarity=0.182  Sum_probs=97.0

Q ss_pred             hhhhhhh------hhhccCCchHHHHHHHc---CCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCC
Q psy2185          16 TETEDEL------LMLTKDNETALHCAAQY---GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP   86 (136)
Q Consensus        16 ~~~~~~~------~~~~~~g~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~   86 (136)
                      ...|.++      +..+..|.||||+|+..   |+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|+
T Consensus       150 l~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga  229 (278)
T 1dcq_A          150 YADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKA  229 (278)
T ss_dssp             HHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            3456553      34478899999999999   89999999999999999999999999999999999999999999999


Q ss_pred             ChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCc
Q psy2185          87 GLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCS  128 (136)
Q Consensus        87 ~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~  128 (136)
                      ++       ..++..|.||||+|+..|+.+++++|+++|++.
T Consensus       230 d~-------~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          230 SI-------EIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             CT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             CC-------CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            98       788999999999999999999999999998874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=6.9e-25  Score=145.75  Aligned_cols=124  Identities=17%  Similarity=0.117  Sum_probs=109.0

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCC----HHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGH----TPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLET   77 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~----~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~   77 (136)
                      |+..+..+.++.++.+.|++++.++..|.|+++.++..+.    ..++++|+++|++++.++..|.||||+|+..|+.++
T Consensus       175 A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~  254 (337)
T 4g8k_A          175 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL  254 (337)
T ss_dssp             HHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHH
T ss_pred             HHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHH
Confidence            3455566777778778899999999999999998776544    457889999999999999999999999999999999


Q ss_pred             HHHHHHh-CCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhh
Q psy2185          78 VDTLVRT-HPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVT  132 (136)
Q Consensus        78 ~~~Ll~~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~  132 (136)
                      ++.|+.. +.++       +.++..|+||||+|++.|+.+++++|+++|++++.+|
T Consensus       255 v~~Ll~~~~~~v-------n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~  303 (337)
T 4g8k_A          255 VQRLLEQEHIEI-------NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  303 (337)
T ss_dssp             HHHHHTSTTCCT-------TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred             HHHHHHhcCCcc-------cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            9999985 6676       6788899999999999999999999999999998765

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=9.1e-25  Score=149.51  Aligned_cols=131  Identities=21%  Similarity=0.233  Sum_probs=80.8

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      ++.+..+.++.++ +.|.+++..+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+
T Consensus        22 a~~g~~~~v~~Ll-~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll  100 (437)
T 1n11_A           22 SFMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL  100 (437)
T ss_dssp             HHHTCHHHHHHHH-HTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHCCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence            3444445554444 446777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhCCChhHhhh--------------------------hhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhcc
Q psy2185          83 RTHPGLIQAYN--------------------------ARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRR  134 (136)
Q Consensus        83 ~~~~~~~~~~~--------------------------~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~  134 (136)
                      +.|+++.....                          .....+..|.||||+|+..|+.+++++|+++|++++..+..
T Consensus       101 ~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~  178 (437)
T 1n11_A          101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN  178 (437)
T ss_dssp             HHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSS
T ss_pred             hCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Confidence            77766511000                          00223344555555555555555555555555555555443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.92  E-value=3.1e-26  Score=141.22  Aligned_cols=116  Identities=13%  Similarity=0.015  Sum_probs=103.1

Q ss_pred             HHHHhhhhhhhhhhhccCCchHHHHHHHcCC------HHHHHHHHhcCCCCCcccCCCC-CHHHHHHHcC-----CHHHH
Q psy2185          11 SRDMETETEDELLMLTKDNETALHCAAQYGH------TPVVSQLLEHSCDPTIRNSRHE-TALDLAAQYG-----RLETV   78 (136)
Q Consensus        11 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~------~~~~~~ll~~~~~~~~~~~~g~-t~l~~a~~~~-----~~~~~   78 (136)
                      +.++|.+.|++++.+|..|+||||+|+..++      .+++++|+++|++++.+|..|. ||||+|+..+     ..+++
T Consensus        57 iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv  136 (186)
T 3t8k_A           57 ISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLY  136 (186)
T ss_dssp             HHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHH
Confidence            5566778999999999999999999999987      6889999999999999999999 9999999844     35689


Q ss_pred             HHHHH-hCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhc
Q psy2185          79 DTLVR-THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus        79 ~~Ll~-~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~  133 (136)
                      ++|++ .|+++       ..++..|.||||+|++.|+.+++++|+++....+.+++
T Consensus       137 ~~Ll~~~gad~-------~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~~  185 (186)
T 3t8k_A          137 KLIFSQSGLQL-------LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN  185 (186)
T ss_dssp             HHHHTSTTCCT-------TCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC-
T ss_pred             HHHHHhcCCCC-------cccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcccC
Confidence            99999 99998       88999999999999999999999999987766666554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=3.5e-25  Score=145.59  Aligned_cols=112  Identities=15%  Similarity=0.170  Sum_probs=101.0

Q ss_pred             HHHHHHhhhhhhhhhh------hccCCchHHHHHHHc---CCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHH
Q psy2185           9 RKSRDMETETEDELLM------LTKDNETALHCAAQY---GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD   79 (136)
Q Consensus         9 ~~~~~ll~~~~~~~~~------~~~~g~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~   79 (136)
                      ..+..++ ..+.+++.      .+..|.||||+|+..   ++.+++++|+++|++++.++..|.||||+|+..|+.++++
T Consensus       165 ~~v~~ll-~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~  243 (301)
T 2b0o_E          165 LSVLEAF-ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLK  243 (301)
T ss_dssp             HHHHHHH-HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHH-hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            3344444 77788887      588999999999997   8999999999999999999999999999999999999999


Q ss_pred             HHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCc
Q psy2185          80 TLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCS  128 (136)
Q Consensus        80 ~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~  128 (136)
                      +|++.|+++       ...+..|.||||+|+..|+.+++++|+++|++.
T Consensus       244 ~Ll~~gad~-------~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          244 LLLKGRALV-------GTVNEAGETALDIARKKHHKECEELLEQAQAGT  285 (301)
T ss_dssp             HHHHTTCCC-------SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCCC-------CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            999999998       788899999999999999999999999988763

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.92  E-value=2.1e-24  Score=140.24  Aligned_cols=111  Identities=18%  Similarity=0.089  Sum_probs=100.1

Q ss_pred             HHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH-hC
Q psy2185           7 LKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR-TH   85 (136)
Q Consensus         7 ~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~   85 (136)
                      ..+.+ ..+...|...+..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|
T Consensus       162 ~~~~v-~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~g  240 (276)
T 4hbd_A          162 DIETV-LQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPS  240 (276)
T ss_dssp             HHHHH-HHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTT
T ss_pred             hHHHH-HHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCC
Confidence            33444 44456677788888899999999999999999999999999999999999999999999999999999999 89


Q ss_pred             CChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q psy2185          86 PGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSD  125 (136)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g  125 (136)
                      +++       ...+..|+||||+|+..|+.+++++|++++
T Consensus       241 ad~-------~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          241 CDI-------SLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCT-------TCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCC-------cCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            888       778899999999999999999999999864

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.92  E-value=8.9e-25  Score=147.29  Aligned_cols=109  Identities=20%  Similarity=0.188  Sum_probs=76.8

Q ss_pred             hhhhhhccCCchHHHHHHHcC---CHHHHHHHHhcCCCCCc--------ccCCCCCHHHHHHHcCCHHHHHHHHHhC-CC
Q psy2185          20 DELLMLTKDNETALHCAAQYG---HTPVVSQLLEHSCDPTI--------RNSRHETALDLAAQYGRLETVDTLVRTH-PG   87 (136)
Q Consensus        20 ~~~~~~~~~g~t~l~~a~~~g---~~~~~~~ll~~~~~~~~--------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~-~~   87 (136)
                      .+++..+..|.||||+|+..+   +.+++++|++.|++++.        .+..|.||||+|+..|+.+++++|++.+ .+
T Consensus       226 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~  305 (373)
T 2fo1_E          226 GDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN  305 (373)
T ss_dssp             HTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC
T ss_pred             cChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC
Confidence            455666666666666666665   56666666666666654        3446667777777777777777777654 55


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +       +..+..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       306 ~-------n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g  346 (373)
T 2fo1_E          306 K-------DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD  346 (373)
T ss_dssp             T-------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSS
T ss_pred             c-------cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCC
Confidence            4       5667788888888888888888888888888888887765

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=1.4e-24  Score=133.30  Aligned_cols=103  Identities=23%  Similarity=0.211  Sum_probs=90.9

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCccc-CCCCCHHHHHHHcCCHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      +..+..+.++.++.  +.+++..|..|.||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+.+++++|
T Consensus        52 ~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~L  129 (183)
T 3deo_A           52 ARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL  129 (183)
T ss_dssp             HHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHH
Confidence            34444556666665  88999999999999999999999999999999999999888 8899999999999999999999


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCc
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGH  114 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~  114 (136)
                      ++.|+++       ..++..|+||||+|++.++
T Consensus       130 l~~ga~~-------~~~d~~g~tpl~~A~~~~~  155 (183)
T 3deo_A          130 VELGADI-------EVEDERGLTALELAREILK  155 (183)
T ss_dssp             HHHTCCT-------TCCCTTSCCHHHHHHHHHH
T ss_pred             HHcCCCC-------cCCCCCCCCHHHHHHHhcc
Confidence            9999998       6788889999988887643

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.92  E-value=3.8e-24  Score=135.56  Aligned_cols=124  Identities=19%  Similarity=0.145  Sum_probs=108.0

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCccc-CCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      ..+..+.++.++ +.|.+++..+..|.||||+|+..|+.+++++|++.+.+++... ..|.||||+|+..|+.+++++|+
T Consensus        18 ~~g~~~~~~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll   96 (240)
T 3eu9_A           18 QYGIYERCRELV-EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM   96 (240)
T ss_dssp             HTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHH
T ss_pred             HcCChHHHHHHH-HcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHH
Confidence            334445555554 6778999999999999999999999999999999999887554 45999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.++++       ...+..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus        97 ~~g~~~-------~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g  142 (240)
T 3eu9_A           97 KYGADP-------SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG  142 (240)
T ss_dssp             HTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HcCCCC-------cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCC
Confidence            999887       6678889999999999999999999999999999888765

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=4.7e-25  Score=141.05  Aligned_cols=116  Identities=23%  Similarity=0.208  Sum_probs=100.5

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCccc-CCCCCHHHHHHHcCCHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      +..+..+.++.++.  +.+++.+|..|.||||+||..|+.+++++|+++|++++.++ ..|+||||+|+..|+.+++++|
T Consensus        53 ~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~L  130 (244)
T 3ui2_A           53 ARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL  130 (244)
T ss_dssp             HTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            34444556666665  88999999999999999999999999999999999999888 8899999999999999999999


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHH----------------HcCcHHHHHHHHhCCCC
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLAS----------------RNGHRFYLQQKVQSDFC  127 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~----------------~~g~~~~~~~Ll~~g~~  127 (136)
                      ++.|+++       +..+..|+||||+|+                ..|+.+++++|++++.+
T Consensus       131 l~~ga~~-------~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          131 VELGADI-------EVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHTTCCT-------TCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHCCCCC-------CCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            9999998       667777888777776                77899999999986544

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=4.6e-25  Score=127.44  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=91.4

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.+ .+.+.+++..+..|.||||+|+..++.+++++|++.|++++.++..|+||||+|+..++.+++++|+
T Consensus        15 ~~~~~~~~v~~l-l~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll   93 (123)
T 3aaa_C           15 LKNGDLDEVKDY-VAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL   93 (123)
T ss_dssp             HHTTCHHHHHHH-HHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHcCCHHHHHHH-HHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            334444555554 4678899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcH
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHR  115 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~  115 (136)
                      +.++++       ...+..|+||||+|...+..
T Consensus        94 ~~ga~~-------~~~~~~g~t~l~~A~~~~~~  119 (123)
T 3aaa_C           94 SKGADK-------TVKGPDGLTAFEATDNQAIK  119 (123)
T ss_dssp             HTTCCT-------TCCCTTSCCHHHHCCCHHHH
T ss_pred             HcCCCC-------CCcCCCCCCHHHHhCCHHHH
Confidence            999998       77889999999999544333

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.92  E-value=1.1e-25  Score=132.28  Aligned_cols=117  Identities=17%  Similarity=0.193  Sum_probs=99.9

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+..+.++.+ .+.+.+++..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|+
T Consensus        18 ~~~~~~~~~~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll   96 (137)
T 3c5r_A           18 SIKGDIPSVEYL-LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL   96 (137)
T ss_dssp             HHHTCHHHHHHH-HHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHH-HHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            334444555444 4678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFC  127 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~  127 (136)
                      +.|+++       ...+..|.|||++|+..++.+++++|.+.+..
T Consensus        97 ~~ga~~-------~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           97 SYGASR-------NAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HTTCCT-------TCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             HcCCCC-------CCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            999998       78899999999999999999998888776544

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.91  E-value=4.4e-24  Score=135.26  Aligned_cols=119  Identities=20%  Similarity=0.223  Sum_probs=77.6

Q ss_pred             hhhhhhhhhc-cCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhh--
Q psy2185          17 ETEDELLMLT-KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN--   93 (136)
Q Consensus        17 ~~~~~~~~~~-~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~--   93 (136)
                      +.+.+++..+ ..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++.++++.....  
T Consensus        63 ~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g  142 (240)
T 3eu9_A           63 SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG  142 (240)
T ss_dssp             HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCC
Confidence            3344444333 3366666666666666666666666666666666666666666666666666666665544311100  


Q ss_pred             -------------------------hhccCCC-CCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          94 -------------------------ARAQSTL-FPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        94 -------------------------~~~~~~~-~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                                               +....+. .|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       143 ~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g  210 (240)
T 3eu9_A          143 MTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKG  210 (240)
T ss_dssp             CCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTS
T ss_pred             CcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence                                     0123343 78899999999999999999999999999888776

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.91  E-value=1e-23  Score=141.81  Aligned_cols=111  Identities=14%  Similarity=0.101  Sum_probs=101.0

Q ss_pred             HHHHHHHhhhhhhhhhhhc--cCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Q psy2185           8 KRKSRDMETETEDELLMLT--KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH   85 (136)
Q Consensus         8 ~~~~~~ll~~~~~~~~~~~--~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~   85 (136)
                      .+.+..+ ...|++++..+  ..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|++.|
T Consensus       213 ~~~v~~L-L~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~G  291 (368)
T 3jue_A          213 LPTMADA-LAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG  291 (368)
T ss_dssp             HHHHHHH-HHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHH-HHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCc
Confidence            3444444 47889999988  78999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCC
Q psy2185          86 PGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDF  126 (136)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~  126 (136)
                      +++       ...+..|.||||+|+..|+.+++++|+..+.
T Consensus       292 ad~-------~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          292 ADL-------GARDSEGRDPLTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             CCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             CCC-------CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            998       7888999999999999999999999998653

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.91  E-value=1.3e-23  Score=119.20  Aligned_cols=93  Identities=23%  Similarity=0.265  Sum_probs=84.8

Q ss_pred             hhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCC
Q psy2185          22 LLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF  101 (136)
Q Consensus        22 ~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  101 (136)
                      ....+..|.|+||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|++.|+++       ...+..
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-------~~~d~~   89 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-------XAQDKF   89 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTT
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-------cccccC
Confidence            4456778999999999999999999999999999999999999999999999999999999999998       778889


Q ss_pred             CCCHHHHHHHcCcHHHHHHH
Q psy2185         102 PASPLHLASRNGHRFYLQQK  121 (136)
Q Consensus       102 ~~t~l~~A~~~g~~~~~~~L  121 (136)
                      |+||||+|+..|+.+++++|
T Consensus        90 g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           90 GKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             SCCHHHHHHHHTCHHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHh
Confidence            99999999999999999987

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.90  E-value=2.3e-23  Score=140.44  Aligned_cols=114  Identities=22%  Similarity=0.214  Sum_probs=99.9

Q ss_pred             HHHHHHHHhhhhhhhhhh--------hccCCchHHHHHHHcCCHHHHHHHHhcC-CCCCcccCCCCCHHHHHHHcCCHHH
Q psy2185           7 LKRKSRDMETETEDELLM--------LTKDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLET   77 (136)
Q Consensus         7 ~~~~~~~ll~~~~~~~~~--------~~~~g~t~l~~a~~~g~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~   77 (136)
                      ..+.+ .++.+.|.+++.        .+..|.||||+|+..|+.+++++|++.+ ++++.++..|.||||+|+..|+.++
T Consensus       250 ~~~~v-~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~i  328 (373)
T 2fo1_E          250 QVASA-KLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEV  328 (373)
T ss_dssp             HHHHH-HHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             hHHHH-HHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHH
Confidence            33444 555577887775        5668999999999999999999999875 9999999999999999999999999


Q ss_pred             HHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCc
Q psy2185          78 VDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCS  128 (136)
Q Consensus        78 ~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~  128 (136)
                      +++|++.|+++       ...+..|.|||++|+..|+.+++++|+++|++.
T Consensus       329 v~~Ll~~gad~-------~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          329 VMYLIQQGASV-------EAVDATDHTARQLAQANNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             HHHHHHTTCCS-------SCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred             HHHHHHcCCCc-------cCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence            99999999998       778899999999999999999999999999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.88  E-value=2e-22  Score=135.51  Aligned_cols=103  Identities=18%  Similarity=0.112  Sum_probs=96.4

Q ss_pred             ccCCchHHHHHHHc-CCHHHHHHHHhcCCCCCccc--CCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCC
Q psy2185          26 TKDNETALHCAAQY-GHTPVVSQLLEHSCDPTIRN--SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFP  102 (136)
Q Consensus        26 ~~~g~t~l~~a~~~-g~~~~~~~ll~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  102 (136)
                      +..+.|+||.|+.. ++.+++++|++.|++++..+  ..|.||||+|+..|+.+++++|++.|+++       +..+..|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-------n~~d~~G  268 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-------NQADSAG  268 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTS
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-------CCCCCCC
Confidence            34567899999999 99999999999999999888  88999999999999999999999999998       7788999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         103 ASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       103 ~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       269 ~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G  301 (368)
T 3jue_A          269 RGPLHHATILGHTGLACLFLKRGADLGARDSEG  301 (368)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCC
Confidence            999999999999999999999999999999876

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=1.9e-21  Score=127.81  Aligned_cols=100  Identities=17%  Similarity=0.088  Sum_probs=93.6

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCc------ccCCCCCHHHHHHHc---CCHHHHHHHHHhCCChhHhhhhhccCC
Q psy2185          29 NETALHCAAQYGHTPVVSQLLEHSCDPTI------RNSRHETALDLAAQY---GRLETVDTLVRTHPGLIQAYNARAQST   99 (136)
Q Consensus        29 g~t~l~~a~~~g~~~~~~~ll~~~~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~   99 (136)
                      ..++|+.|+..|+.+.++.++..|++++.      .+..|.||||+|+..   ++.+++++|++.|+++       +..+
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-------n~~d  223 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-------DAKA  223 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-------TCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-------CCCC
Confidence            45779999999999999999999999987      688999999999997   8999999999999998       7788


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         100 LFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       100 ~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G  259 (301)
T 2b0o_E          224 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG  259 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            899999999999999999999999999999999877

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.87  E-value=1.5e-21  Score=135.97  Aligned_cols=100  Identities=17%  Similarity=0.085  Sum_probs=93.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCcc------cCCCCCHHHHHHH---cCCHHHHHHHHHhCCChhHhhhhhccCC
Q psy2185          29 NETALHCAAQYGHTPVVSQLLEHSCDPTIR------NSRHETALDLAAQ---YGRLETVDTLVRTHPGLIQAYNARAQST   99 (136)
Q Consensus        29 g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~------~~~g~t~l~~a~~---~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   99 (136)
                      ..+.||.|+..|+.+.++.|++.|++++.+      +..|.||||+|+.   .|+.+++++|++.|+++       +..+
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-------n~~d  204 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-------DAKA  204 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-------TCCC
T ss_pred             cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-------CccC
Confidence            347799999999999999999999999877      7889999999977   89999999999999998       7889


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         100 LFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       100 ~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       205 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g  240 (497)
T 3lvq_E          205 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAG  240 (497)
T ss_dssp             SSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence            999999999999999999999999999999999887

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=3.2e-21  Score=125.47  Aligned_cols=100  Identities=21%  Similarity=0.116  Sum_probs=92.2

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCC------cccCCCCCHHHHHHHc---CCHHHHHHHHHhCCChhHhhhhhccCC
Q psy2185          29 NETALHCAAQYGHTPVVSQLLEHSCDPT------IRNSRHETALDLAAQY---GRLETVDTLVRTHPGLIQAYNARAQST   99 (136)
Q Consensus        29 g~t~l~~a~~~g~~~~~~~ll~~~~~~~------~~~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~   99 (136)
                      ..++|+.|+..|+.+.+..++..|.+++      ..+..|.||||+|+..   ++.+++++|++.|+++       +.++
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-------n~~d  202 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-------DKQT  202 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-------TCCC
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-------cccC
Confidence            4578999999999999999999998853      4478899999999999   8999999999999998       7788


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         100 LFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       100 ~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus       203 ~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g  238 (278)
T 1dcq_A          203 GKGSTALHYCCLTDNAECLKLLLRGKASIEIANESG  238 (278)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCC
Confidence            999999999999999999999999999999999877

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.84  E-value=2.5e-20  Score=102.54  Aligned_cols=84  Identities=31%  Similarity=0.338  Sum_probs=74.4

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      ++.+..+.++. +.+.|.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++|+
T Consensus        10 ~~~~~~~~v~~-Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll   88 (93)
T 1n0q_A           10 ARNGHLEVVKL-LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL   88 (93)
T ss_dssp             HHHTCHHHHHH-HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHH-HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            34444455544 45678999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCC
Q psy2185          83 RTHPG   87 (136)
Q Consensus        83 ~~~~~   87 (136)
                      +.|++
T Consensus        89 ~~ga~   93 (93)
T 1n0q_A           89 EAGAY   93 (93)
T ss_dssp             HTTCC
T ss_pred             HcCCC
Confidence            98864

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.82  E-value=8e-22  Score=132.99  Aligned_cols=97  Identities=22%  Similarity=0.224  Sum_probs=45.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCC---CcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCH
Q psy2185          29 NETALHCAAQYGHTPVVSQLLEHSCDP---TIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASP  105 (136)
Q Consensus        29 g~t~l~~a~~~g~~~~~~~ll~~~~~~---~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~  105 (136)
                      +.||||+|+..|+.+++++|++.|+..   ...+..+.||||+|+..|+.+++++|++.|++......  ...  . +||
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i--~~~--~-~Tp  166 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI--QAE--N-YHA  166 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH--SHH--H-HHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccc--CCC--C-CCH
Confidence            345555555555555555555554421   11223344555555555555555555555543211000  000  1 455


Q ss_pred             HHHHHHcCcHHHHHHHHhCCCCcch
Q psy2185         106 LHLASRNGHRFYLQQKVQSDFCSSK  130 (136)
Q Consensus       106 l~~A~~~g~~~~~~~Ll~~g~~~~~  130 (136)
                      ||+|+..|+.+++++|+++|++++.
T Consensus       167 Lh~Aa~~G~~eiv~~Ll~~ga~~~~  191 (376)
T 2aja_A          167 FRLAAENGHLHVLNRLCELAPTEAT  191 (376)
T ss_dssp             HHHHHHTTCHHHHHHHHHSCGGGHH
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccch
Confidence            5555555555555555555555443

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=9.3e-21  Score=127.82  Aligned_cols=119  Identities=18%  Similarity=0.188  Sum_probs=89.4

Q ss_pred             chhhHHHHHHHHHhhhhhhh---hhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCC---CcccCCCCCHHHHHHHcCCH
Q psy2185           2 SEYNNLKRKSRDMETETEDE---LLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDP---TIRNSRHETALDLAAQYGRL   75 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~---~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~---~~~~~~g~t~l~~a~~~~~~   75 (136)
                      |+..+..+.++.++. .+..   .+..+..|.||||+|+..|+.+++++|+++|+++   +..+.. .||||+|+..|+.
T Consensus        99 Aa~~G~~e~v~~Ll~-~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~  176 (376)
T 2aja_A           99 AAITGCSSALDTLCL-LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHL  176 (376)
T ss_dssp             HHHHCCHHHHHHHTT-C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHH-cCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCH
Confidence            344455566666654 4431   1233456789999999999999999999999763   233333 8999999999999


Q ss_pred             HHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHH-HcCcHHHHHHHHhCCCC
Q psy2185          76 ETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS-RNGHRFYLQQKVQSDFC  127 (136)
Q Consensus        76 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~-~~g~~~~~~~Ll~~g~~  127 (136)
                      +++++|++.|+++...     ..+..|.||||+|+ ..|+.+++++|+++|++
T Consensus       177 eiv~~Ll~~ga~~~~~-----~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~  224 (376)
T 2aja_A          177 HVLNRLCELAPTEATA-----MIQAENYYAFRWAAVGRGHHNVINFLLDCPVM  224 (376)
T ss_dssp             HHHHHHHHSCGGGHHH-----HHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH
T ss_pred             HHHHHHHHcCCccchh-----ccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc
Confidence            9999999999986320     13445789999999 99999999999998753

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.80  E-value=5.4e-20  Score=122.05  Aligned_cols=96  Identities=15%  Similarity=0.023  Sum_probs=85.1

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCc-ccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHHH
Q psy2185          33 LHCAAQYGHTPVVSQLLEHSCDPTI-RNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASR  111 (136)
Q Consensus        33 l~~a~~~g~~~~~~~ll~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~  111 (136)
                      .|.|+..+..+++++|++.|++++. ++..|+||||+|+..|+.+++++|++.|+++       ...+..|+||||+|+.
T Consensus       101 ~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-------n~~d~~g~TpLh~A~~  173 (327)
T 1sw6_A          101 QHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-------LYGDNMGESCLVKAVK  173 (327)
T ss_dssp             ---CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TBCCTTCCCHHHHHHH
T ss_pred             hHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-------CCcCCCCCCHHHHHHH
Confidence            4777878888999999999999999 8999999999999999999999999999998       7788999999999999


Q ss_pred             cCc---HHHHHHHHhCC-CCcchhhccC
Q psy2185         112 NGH---RFYLQQKVQSD-FCSSKVTRRF  135 (136)
Q Consensus       112 ~g~---~~~~~~Ll~~g-~~~~~~~~~g  135 (136)
                      .|+   .++++.|++++ ++++.+|..|
T Consensus       174 ~g~~~~~~~~~~ll~~~~~~~~~~d~~g  201 (327)
T 1sw6_A          174 SVNNYDSGTFEALLDYLYPCLILEDSMN  201 (327)
T ss_dssp             SSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             hcccccHHHHHHHHHhhhccccCCCCCC
Confidence            999   78888888876 7788888776

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=8.5e-20  Score=104.00  Aligned_cols=93  Identities=24%  Similarity=0.270  Sum_probs=79.8

Q ss_pred             hHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHh
Q psy2185           5 NNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRT   84 (136)
Q Consensus         5 ~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~   84 (136)
                      .+..+.++. +.+.+.+++..|..|.||||+|+..++.+++++|+++|++++.++..|.||||+|+..++.+++++|++.
T Consensus        19 ~~~~~~~~~-Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~   97 (115)
T 2l6b_A           19 NGHAEEVKK-LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK   97 (115)
T ss_dssp             HTCHHHHHH-HTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT
T ss_pred             cCCHHHHHH-HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            334444544 4567899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHhhhhhccCCCCCCCH
Q psy2185          85 HPGLIQAYNARAQSTLFPASP  105 (136)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~t~  105 (136)
                      |+++       +..+..+.||
T Consensus        98 ga~~-------n~~~~~~~~~  111 (115)
T 2l6b_A           98 GADV-------NARSWGSSHH  111 (115)
T ss_dssp             SSSH-------HHHSCCCC--
T ss_pred             CCCC-------CcCCcccccc
Confidence            9998       5556667766

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.72  E-value=3.6e-17  Score=92.51  Aligned_cols=78  Identities=26%  Similarity=0.316  Sum_probs=69.0

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      +..+..+.++.++ +.+.+++.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|
T Consensus        32 ~~~g~~~~v~~Ll-~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           32 ARAGQDDEVRILM-ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHHH-HcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            3444455565555 66899999999999999999999999999999999999999999999999999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-06
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-06
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	8e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-09
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	9e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.001
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-04
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.004
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-04

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 7e-16
 Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQ 90
           T LH A+  GH P+V  LL+    P + N + ET L +AA+ G  E    L++ +   + 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ-NKAKVN 60

Query: 91  AYNARAQSTLFPASPLHLASRNGH 114
           A     Q      +PLH A+R GH
Sbjct: 61  AKAKDDQ------TPLHCAARIGH 78

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 5e-14
 Identities = 21/56 (37%), Positives = 30/56 (53%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
           TK   + LH AAQ GHT +V+ LL++   P   +S   T L +A + G +   D L
Sbjct: 327 TKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 2e-11
 Identities = 19/61 (31%), Positives = 27/61 (44%)

Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
              ET LH AA+ GHT V   LL++      +    +T L  AA+ G    V  L+  +
Sbjct: 30 NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENN 89

Query: 86 P 86
           
Sbjct: 90 A 90

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-08
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           +   T LH A+ YG+  +V  LL+H  D   +     + L  AAQ G  + V  L++ + 
Sbjct: 295 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK-NG 353

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
                 ++         +PL +A R G+
Sbjct: 354 ASPNEVSSDGT------TPLAIAKRLGY 375

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 4e-08
 Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 26/127 (20%)

Query: 14  METETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYG 73
              E E     +TK   T LH AA+YG   V   LLE    P        T L +A  + 
Sbjct: 117 ALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHN 176

Query: 74  RLETVDTL--------------------------VRTHPGLIQAYNARAQSTLFPASPLH 107
            L+ V  L                          V     L+Q   +    ++   +PLH
Sbjct: 177 NLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLH 236

Query: 108 LASRNGH 114
           LA++ GH
Sbjct: 237 LAAQEGH 243

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-05
 Identities = 31/116 (26%), Positives = 44/116 (37%), Gaps = 28/116 (24%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
           +    T LH AAQ GH  +V+ LL    +  + N    T L L AQ G +   D L++ H
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK-H 286

Query: 86  PGLIQAYNARAQSTLFPA---------------------------SPLHLASRNGH 114
             ++ A      + L  A                           SPLH A++ GH
Sbjct: 287 GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGH 342

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 2e-05
 Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 40/122 (32%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDP------------------------------ 55
            KD++T LHCAA+ GHT +V  LLE++ +P                              
Sbjct: 63  AKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKE 122

Query: 56  ---TIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRN 112
                   +  T L +AA+YG++   + L+        A            +PLH+A  +
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGL------TPLHVAVHH 175

Query: 113 GH 114
            +
Sbjct: 176 NN 177

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 8e-05
 Identities = 25/88 (28%), Positives = 36/88 (40%), Gaps = 7/88 (7%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
            +  T LH AA+     V   LL++       + +  T L LAAQ G  E    +V    
Sbjct: 196 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE----MVALLL 251

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
                 N   +S     +PLHL ++ GH
Sbjct: 252 SKQANGNLGNKSG---LTPLHLVAQEGH 276

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.4 bits (150), Expect = 3e-13
 Identities = 16/58 (27%), Positives = 23/58 (39%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
            +D +T +  AAQ G   VV  L++        ++   TA  LA        VD   R
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 42.0 bits (97), Expect = 6e-06
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 8/89 (8%)

Query: 28  DNETALHCAAQYGHTP-VVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
              TALH AAQ  + P V   + E   +   ++   +T + LAAQ GR+E V  L++   
Sbjct: 186 KGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ-QG 244

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGHR 115
             ++A +A         +   LA  N H 
Sbjct: 245 ASVEAVDATDH------TARQLAQANNHH 267

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.3 bits (95), Expect = 1e-05
 Identities = 13/59 (22%), Positives = 16/59 (27%), Gaps = 8/59 (13%)

Query: 26 TKDNETALHCAAQYGHTPVVSQLLEHS--------CDPTIRNSRHETALDLAAQYGRLE 76
           + N T LH  A          L+ H          D    +    T L LA    R  
Sbjct: 30 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 37.0 bits (84), Expect = 3e-04
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 31 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRTHPGLI 89
            LH  A  G   +   +   S +  I + RH  T L   A     E  + L+       
Sbjct: 4  IKLHTEAA-GSYAITEPITRESVN--IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 90 QAYNA 94
           A  A
Sbjct: 61 IAAGA 65

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 6e-11
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
            +  +T L  A +  H  +V +LLE    +    +S  +TAL LA +    +  + L +
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 2e-09
 Identities = 26/127 (20%), Positives = 37/127 (29%), Gaps = 44/127 (34%)

Query: 26  TKDNETALHCAAQYGHTPVV--------------------------------------SQ 47
            K   TAL  AA+ GH  V+                                        
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 48  LLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH 107
           LL+H  D  +R  R +T L LA +   L  V  L+      I   ++  +      + L 
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK------TALL 258

Query: 108 LASRNGH 114
           LA     
Sbjct: 259 LAVELKL 265

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 3e-09
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-ETALDLAAQYGRLETVDTLVRTHP 86
          ++   L  A Q     +V QLLE   +   +      T L  A Q  R + V+ L+R   
Sbjct: 4  EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 6/34 (17%), Positives = 11/34 (32%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
             D +TAL  A +     +   L +        +
Sbjct: 250 DSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE----------TALDLAAQYGRLETVDT 80
           TA   AA YG    +  L +   +  +R    E          TAL  AA+ G +E +  
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166

Query: 81  LVRTHPGLIQAYN 93
           L+      + A +
Sbjct: 167 LLDEMGADVNACD 179

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 8e-11
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 24 MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPT---IRNSRHETALDLAAQYGRL 75
           +T+D +TALH A  + H P +  LL  S       ++N   +TAL LAA  G  
Sbjct: 4  YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 3e-09
 Identities = 15/55 (27%), Positives = 18/55 (32%)

Query: 29  NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
             T LH A +     V+  LL+   DPT R     T L  A           L  
Sbjct: 192 GRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 2e-04
 Identities = 16/61 (26%), Positives = 22/61 (36%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
               +TALH AA  G    V +L        +      TAL LA +         L++  
Sbjct: 42  NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPR 101

Query: 86  P 86
           P
Sbjct: 102 P 102

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 7e-04
 Identities = 5/26 (19%), Positives = 7/26 (26%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH 51
                T L  A    +  +   L  H
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAH 247

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 9e-04
 Identities = 12/65 (18%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 63  ETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKV 122
           +TAL LA  +     +D L+       +  + +        + LHLA+  G    +++  
Sbjct: 10  DTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQ---NDLGQTALHLAAILGEASTVEKLY 65

Query: 123 QSDFC 127
            +   
Sbjct: 66  AAGAG 70

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.8 bits (133), Expect = 9e-11
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAA 70
            + +T L+ AA+ G+  +V  LL++  DP I N      +D  A
Sbjct: 257 SNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.0 bits (118), Expect = 9e-09
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 3/88 (3%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           +   T LH      +  +V  L++H  +    ++  E+ L  A +        T      
Sbjct: 105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLD 164

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
            L               + LH       
Sbjct: 165 YLYPCLILEDS---MNRTILHHIIITSG 189

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 12/66 (18%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 20  DELLMLTKDNETALHCAAQYGHTPVVSQLLEH---SCDPTIRNSRHETALDLAAQYGRLE 76
             +   T + E+  +         ++  L      +     ++S  +T L++AA+ G + 
Sbjct: 214 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 273

Query: 77  TVDTLV 82
            VD L+
Sbjct: 274 IVDALL 279

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 2e-10
 Identities = 13/51 (25%), Positives = 26/51 (50%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV 78
              +ALH A+  G  P+V  L+    D +++N  ++T L +A     ++ +
Sbjct: 176 SGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 3e-07
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 28 DNETALHCAAQYGHTPVVSQLL----EHSCDPTIRNSRHETALDLAAQY 72
          D +T LH A   G+ P V +L+    +   +  I N+  +T L LA   
Sbjct: 2  DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 1e-04
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 20  DELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD 79
           D   +  K   + L  A +     +V  LL+H  +   +     +AL  A+  G L  V 
Sbjct: 135 DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVR 194

Query: 80  TLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
           TLVR         N    +      PL +A     
Sbjct: 195 TLVR-SGADSSLKNCHNDT------PLMVARSRRV 222

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.3 bits (129), Expect = 3e-10
 Identities = 16/45 (35%), Positives = 22/45 (48%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQ 71
            D  T LH AA +G       L+E+ CD    N   +TA D+A +
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.7 bits (117), Expect = 1e-08
 Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
            K   TALH AA  G+T V+  L++   D  I++    T L  AA +G+ E    LV  +
Sbjct: 196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE-N 254

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGHRF 116
              ++A N   Q      +   +A  +   +
Sbjct: 255 LCDMEAVNKVGQ------TAFDVADEDILGY 279

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.6 bits (114), Expect = 2e-08
 Identities = 14/50 (28%), Positives = 18/50 (36%)

Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLET 77
          D+      A   G T  V +LLE   D    N    TAL  A     ++ 
Sbjct: 39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.6 bits (125), Expect = 1e-09
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 27  KDNETALHCAAQYGHTPV---VSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
             +E     AA  G +     +  LL       +  + +  A  LAA+ G L  ++ L  
Sbjct: 88  IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 147

Query: 84  THPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQ 119
             P  I A                LA+ NGH   L 
Sbjct: 148 LAPTEIMAMIQAENYH-----AFRLAAENGHLHVLN 178

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 50.3 bits (119), Expect = 9e-09
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH--ETALDLAAQYGRLETVDTL 81
           ++  +N  A   AA+ GH  V+++L E +    +   +     A  LAA+ G L  ++ L
Sbjct: 121 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 180

Query: 82  VRTHP 86
               P
Sbjct: 181 CELAP 185

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.4 bits (109), Expect = 2e-07
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 8/88 (9%)

Query: 27  KDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHP 86
           K+   A   +   G   +V++         ++       L        L+ +  L+    
Sbjct: 250 KEMHDAFKLSNPDGVFDLVTK------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSI-- 301

Query: 87  GLIQAYNARAQSTLFPASPLHLASRNGH 114
             I+A    A         L LA R G+
Sbjct: 302 PGIKALAPTATIPGDANELLRLALRLGN 329

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 9/64 (14%), Positives = 16/64 (25%), Gaps = 6/64 (9%)

Query: 31  TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH-----ETALDLAAQYGRLETVDTLVRTH 85
             L           +  LL       +  +          L LA + G       L+   
Sbjct: 281 RNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS-I 339

Query: 86  PGLI 89
           P ++
Sbjct: 340 PSVL 343

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.7 bits (89), Expect = 7e-05
 Identities = 18/109 (16%), Positives = 29/109 (26%), Gaps = 15/109 (13%)

Query: 17  ETEDELLMLTKDNETALHCAAQYGHTPVV-----------SQLLEHSCDPTIRNSRHETA 65
             E  L+ L+      +          V                +   D   +  + E  
Sbjct: 34  ANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVI 93

Query: 66  LDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGH 114
             +AA  G    +DTL      L+ +                LA+ NGH
Sbjct: 94  CFVAAITGCSSALDTLCL----LLTSDEIVKVIQAENYQAFRLAAENGH 138

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 6/28 (21%), Positives = 10/28 (35%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEH 51
            +  D    L  A + G+    + LL  
Sbjct: 312 TIPGDANELLRLALRLGNQGACALLLSI 339

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 20/131 (15%), Positives = 41/131 (31%), Gaps = 18/131 (13%)

Query: 2   SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDP---TIR 58
           +E  +L   +R  E    + + M+  +N  A   AA+ GH  V+++L E +       I+
Sbjct: 134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQ 193

Query: 59  NSRHETALDLAAQYGRLETVDTLV---------------RTHPGLIQAYNARAQSTLFPA 103
              +      A   G    ++ L+                    +               
Sbjct: 194 AENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMH 253

Query: 104 SPLHLASRNGH 114
               L++ +G 
Sbjct: 254 DAFKLSNPDGV 264

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 48.2 bits (113), Expect = 3e-08
 Identities = 13/53 (24%), Positives = 23/53 (43%)

Query: 29  NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
           +ET L  AA+ G       LL++  +  I +       D+A++    + V  L
Sbjct: 156 DETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 7e-04
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTH 85
               +TALH AA   +T  V+ LL H  +   ++ + ET L LAA+ G  E    L+  +
Sbjct: 120 DNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLD-N 178

Query: 86  PGLIQAYNARAQSTLFPASPLHLASRNGH 114
               +  +   +       P  +AS   H
Sbjct: 179 FANREITDHMDRL------PRDVASERLH 201

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.5 bits (80), Expect = 8e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 44 VVSQLLEHSCDPTIR-NSRHETALDLAAQYGRLETVDTLVRTHP 86
          V+S LL    +     +   ET+L LAA++ R +    L+    
Sbjct: 4  VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGA 47

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 33.6 bits (75), Expect = 0.004
 Identities = 5/25 (20%), Positives = 11/25 (44%), Gaps = 1/25 (4%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLE 50
              +      A++  H  +V +LL+
Sbjct: 186 DHMDRLPRDVASERLHHDIV-RLLD 209

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 2e-07
 Identities = 7/46 (15%), Positives = 12/46 (26%), Gaps = 1/46 (2%)

Query: 31 TALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQYGRL 75
            LH A        V +LL         ++      L  +  +   
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.0 bits (89), Expect = 6e-05
 Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLE-HSCDPTIRNSRHETALDLAAQ 71
            K   T L  A   GH      L+E +  +  + +++   A D+A  
Sbjct: 169 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 215

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 2e-04
 Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 6/54 (11%)

Query: 64  TALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFY 117
             L  A        V  L+ + P L+   +   +       PLH +        
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGR------IPLHWSVSFQAHEI 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 3e-07
 Identities = 12/56 (21%), Positives = 19/56 (33%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
           +  TALH A    +  +VS LL+   D      +  +   L            L +
Sbjct: 144 NGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 1e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 4/49 (8%)

Query: 28 DNETALHCAAQYGHTP----VVSQLLEHSCDPTIRNSRHETALDLAAQY 72
          D ++ LH A  +        V+ Q+         +N+  +T L LA   
Sbjct: 1  DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT 49

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 4e-04
 Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 2/46 (4%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDP--TIRNSRHETALD 67
            +T    +          T +  QL + + +    +  S  E + D
Sbjct: 173 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD 218

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 6e-07
 Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
             +  T LH A           L+       I N   +T L +A   G    +  +V
Sbjct: 166 DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 3e-06
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 24  MLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR 83
            + ++  T LH AA      +   LLE   +P  ++    TA+  AA  G L+ +  L+ 
Sbjct: 98  AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLY 157

Query: 84  THP 86
              
Sbjct: 158 YKA 160

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (78), Expect = 0.002
 Identities = 8/46 (17%), Positives = 14/46 (30%), Gaps = 1/46 (2%)

Query: 29 NETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYG 73
          +   +   A  G    + + +       T  +    TAL  A   G
Sbjct: 3  SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAG 48

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.4 bits (95), Expect = 6e-06
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 33  LHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL 81
           LH A ++ H  VV  L+++  D   ++   +TA D++   G  +  + L
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.8 bits (78), Expect = 0.001
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRN 59
          D    L  AA+ G    V  L+ +    T   
Sbjct: 1  DLGKKLLEAARAGQDDEVRILMANGAPFTTDW 32

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-05
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 31 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRH 62
            L  AA  G    ++ LL+++ +   +N   
Sbjct: 3  NELASAAARGDLEQLTSLLQNNVNVNAQNGFG 34

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (86), Expect = 9e-05
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH 51
               +TA   A  YG   VVS +  +
Sbjct: 130 NHKGDTACDLARLYGRNEVVSLMQAN 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (75), Expect = 0.003
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 51  HSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
            + +   RN + +TA DLA  YGR E V  + 
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 2e-04
 Identities = 8/26 (30%), Positives = 9/26 (34%)

Query: 26  TKDNETALHCAAQYGHTPVVSQLLEH 51
                T L  A Q G   +V  L  H
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 6e-04
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 28  DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV 82
                +H A Q GHT VVS L     D   R++R  T L+LA Q G  + VD L 
Sbjct: 100 TGALPIHLAVQEGHTAVVSFL-AAESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.92
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.91
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.9
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.89
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.89
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.87
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.87
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.86
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.85
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.84
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.82
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.81
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.75
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.7

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.2e-29  Score=144.70  Aligned_cols=99  Identities=16%  Similarity=0.136  Sum_probs=95.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHH
Q psy2185          30 ETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLA  109 (136)
Q Consensus        30 ~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A  109 (136)
                      .|||++|+..|+.+++++|++.|++++.++..|+||||+|+..++.+++++|++.|+++       ..++..|+||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-------n~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-------NAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-------TCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccccccccccccccccccccccccccccccccee-------eecccccccchhhh
Confidence            58999999999999999999999999999999999999999999999999999999998       77888999999999


Q ss_pred             HHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         110 SRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       110 ~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +..|+.+++++|+++|+|++.+|+.|
T Consensus        76 ~~~~~~~~v~~Ll~~Gad~~~~d~~G  101 (118)
T d1myoa_          76 VYEGHVSCVKLLLSKGADKTVKGPDG  101 (118)
T ss_dssp             HTTTCCHHHHHHHTTCCCSSSSSSST
T ss_pred             hhcCchhhhhhhhcccccceeeCCCC
Confidence            99999999999999999999999887

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.6e-28  Score=140.16  Aligned_cols=100  Identities=21%  Similarity=0.143  Sum_probs=55.9

Q ss_pred             hhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhc
Q psy2185          17 ETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA   96 (136)
Q Consensus        17 ~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~   96 (136)
                      +.|++++.+|..|+||||+|+..++.++++++++.|++++.+|..|+||||+|+..|+.+++++|++.|+++       .
T Consensus        22 ~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v-------~   94 (130)
T d1ycsb1          22 YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-------F   94 (130)
T ss_dssp             STTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------T
T ss_pred             HcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHHHcCCCc-------c
Confidence            445556666666666666666666666666666666666555556666666666666666666666655554       2


Q ss_pred             cCC-CCCCCHHHHH--HHcCcHHHHHHHHh
Q psy2185          97 QST-LFPASPLHLA--SRNGHRFYLQQKVQ  123 (136)
Q Consensus        97 ~~~-~~~~t~l~~A--~~~g~~~~~~~Ll~  123 (136)
                      ..+ ..+.||++++  ++.|+.+++++|++
T Consensus        95 ~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          95 AMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             CCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            222 2344554443  34455566666554

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.2e-27  Score=147.71  Aligned_cols=120  Identities=18%  Similarity=0.164  Sum_probs=111.1

Q ss_pred             HHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185           8 KRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus         8 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      .+.+ +.+.+.+.+++..|..|.||||+|+..|+.+++++|+++|++++.++..|.||||+++..++.+++++|...+.+
T Consensus        83 ~~i~-~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~  161 (223)
T d1uoha_          83 DEIV-KALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKAS  161 (223)
T ss_dssp             HHHH-HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             cchh-HHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccce
Confidence            3444 445567889999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +       ...+..|+||||.|+..|+.+++++|+++|+|++.+|..|
T Consensus       162 i-------~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g  202 (223)
T d1uoha_         162 T-------NIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEE  202 (223)
T ss_dssp             S-------CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTS
T ss_pred             e-------eeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCC
Confidence            7       7788999999999999999999999999999999999887

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.9e-27  Score=135.36  Aligned_cols=113  Identities=19%  Similarity=0.192  Sum_probs=99.8

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCC-CHHHHHHHcCCHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHE-TALDLAAQYGRLETVDT   80 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~   80 (136)
                      |+..+..+.++.++ +.|++++.++..|.||+|+|+ .|+.+++++|+++|++++.++..+. ||||+|+..|+.+++++
T Consensus        10 Aa~~G~~~~v~~Ll-~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~   87 (125)
T d1bi7b_          10 AAARGRVEEVRALL-EAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV   87 (125)
T ss_dssp             HHHHTCHHHHHHHH-TTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHCCCHHHHHHHH-HcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            44555566676665 678999999999999999764 7999999999999999999887765 69999999999999999


Q ss_pred             HHHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHh
Q psy2185          81 LVRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQ  123 (136)
Q Consensus        81 Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~  123 (136)
                      |++.|+++       ..++..|+||||+|++.|+.+++++|+.
T Consensus        88 Ll~~ga~~-------~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          88 LHRAGARL-------DVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCCS-------SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccc-------ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999998       7889999999999999999999999975

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2.9e-26  Score=135.87  Aligned_cols=95  Identities=22%  Similarity=0.227  Sum_probs=88.6

Q ss_pred             ccCCchHHHHHHHc---CCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCC
Q psy2185          26 TKDNETALHCAAQY---GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFP  102 (136)
Q Consensus        26 ~~~g~t~l~~a~~~---g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  102 (136)
                      +..|.||||+|+..   ++.+++++|+++|++++.++..|+||||+|+..|+.+++++|++.|+++       ..++..|
T Consensus        42 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~-------~~~d~~g  114 (154)
T d1dcqa1          42 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI-------EIANESG  114 (154)
T ss_dssp             SSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTS
T ss_pred             CCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccc-------cccCCCC
Confidence            56799999999974   6789999999999999999999999999999999999999999999998       7889999


Q ss_pred             CCHHHHHHHcCcHHHHHHHHhCCCC
Q psy2185         103 ASPLHLASRNGHRFYLQQKVQSDFC  127 (136)
Q Consensus       103 ~t~l~~A~~~g~~~~~~~Ll~~g~~  127 (136)
                      +||||+|++.|+.+++++|++.+..
T Consensus       115 ~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         115 ETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999996654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.6e-26  Score=141.68  Aligned_cols=126  Identities=20%  Similarity=0.194  Sum_probs=98.9

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      ++.+-.+.++.++...+..++.+|..|+||||+||..|+.+++++++..+......+..+.++++.++..++.+++++|+
T Consensus        11 a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll   90 (223)
T d1uoha_          11 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL   90 (223)
T ss_dssp             HHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHh
Confidence            34445556778888889999999999999999999999999999888887777666667777777777777777777777


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.++++       ...+..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus        91 ~~~~d~-------~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~  136 (223)
T d1uoha_          91 GKGAQV-------NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYE  136 (223)
T ss_dssp             HTTCCT-------TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ccCcee-------EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence            777766       5566777777777777777777777777777777766554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-26  Score=133.10  Aligned_cols=97  Identities=23%  Similarity=0.159  Sum_probs=92.2

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHH
Q psy2185          31 TALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS  110 (136)
Q Consensus        31 t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~  110 (136)
                      ++|+.||..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.++++       ...+..|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-------~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-------NAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-------TCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcccccccccccccccccccccccccccccccccc-------ccccccCcccccccc
Confidence            6789999999999999999999999999999999999999999999999999999988       778899999999999


Q ss_pred             HcCcHHHHHHHHhCCCCcchhhcc
Q psy2185         111 RNGHRFYLQQKVQSDFCSSKVTRR  134 (136)
Q Consensus       111 ~~g~~~~~~~Ll~~g~~~~~~~~~  134 (136)
                      ..|+.+++++|+++|++++.++.+
T Consensus        76 ~~g~~~~v~~Ll~~ga~v~~~~~~   99 (130)
T d1ycsb1          76 SCNNVQVCKFLVESGAAVFAMTYS   99 (130)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCSS
T ss_pred             hhhHHHHHHHHHHcCCCcccccCC
Confidence            999999999999999999987654

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.2e-25  Score=142.56  Aligned_cols=110  Identities=15%  Similarity=0.074  Sum_probs=98.3

Q ss_pred             HHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcc-cCCCCCHHHHHHHcCCHHHHHHHHHhCCChh
Q psy2185          11 SRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIR-NSRHETALDLAAQYGRLETVDTLVRTHPGLI   89 (136)
Q Consensus        11 ~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~-~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~   89 (136)
                      ........+..++.++..|.||||+|+..++.+++++|++.+++++.. +..|.||||+|+..++.+++++|++.|+++ 
T Consensus       140 ~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadi-  218 (255)
T d1oy3d_         140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP-  218 (255)
T ss_dssp             ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred             HHHHhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCC-
Confidence            334455667788889999999999999999999999999999988754 578999999999999999999999999998 


Q ss_pred             HhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q psy2185          90 QAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFC  127 (136)
Q Consensus        90 ~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~  127 (136)
                            ..++..|.||||+|+..|+.+++++|+++||+
T Consensus       219 ------n~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         219 ------TARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             ------TCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ------CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence                  77889999999999999999999999999997

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.6e-25  Score=139.00  Aligned_cols=128  Identities=18%  Similarity=0.118  Sum_probs=99.8

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcc---c-------------------
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIR---N-------------------   59 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~---~-------------------   59 (136)
                      |+..+-.+.++.++...+..++.+|..|.||||+|+..|+.+++++|+++|++++..   +                   
T Consensus         7 A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (229)
T d1ixva_           7 ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVV   86 (229)
T ss_dssp             HHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccccccccc
Confidence            445555677788888888999999999999999999999999999999988665432   2                   


Q ss_pred             -------------------------------------------------CCCCCHHHHHHHcCCHHHHHHHHHhCCChhH
Q psy2185          60 -------------------------------------------------SRHETALDLAAQYGRLETVDTLVRTHPGLIQ   90 (136)
Q Consensus        60 -------------------------------------------------~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~   90 (136)
                                                                       ..|+||+|+|+..|+.+++++|++.+...  
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--  164 (229)
T d1ixva_          87 KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA--  164 (229)
T ss_dssp             HHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC--
T ss_pred             cccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccccccc--
Confidence                                                             24455555555555555555555554322  


Q ss_pred             hhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHh-CCCCcchhhccC
Q psy2185          91 AYNARAQSTLFPASPLHLASRNGHRFYLQQKVQ-SDFCSSKVTRRF  135 (136)
Q Consensus        91 ~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g  135 (136)
                          ...++..|+||||+|+..|+.+++++|++ +|++++.+|.+|
T Consensus       165 ----in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g  206 (229)
T d1ixva_         165 ----VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG  206 (229)
T ss_dssp             ----SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTS
T ss_pred             ----ccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCC
Confidence                24677899999999999999999999997 699999999887

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-25  Score=133.16  Aligned_cols=124  Identities=20%  Similarity=0.236  Sum_probs=105.9

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLV   82 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll   82 (136)
                      +..+-.+.++.++...+.+++..|..|+||||+|+ .++.+++++|++.+.+++..+..|.+|++.++..++.+++++++
T Consensus        10 a~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l   88 (156)
T d1bd8a_          10 AARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV   88 (156)
T ss_dssp             HHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            34445567778887888899999999999999886 48889999999999999888888999999999999999999999


Q ss_pred             HhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          83 RTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +.++++       +..+..|+||||+|++.|+.+++++|+ .|++++.+|..|
T Consensus        89 ~~~~~~-------n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G  133 (156)
T d1bd8a_          89 EHGADV-------NVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARG  133 (156)
T ss_dssp             HTTCCS-------CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTS
T ss_pred             cccccc-------ccccCCCCeeecccccccccccccccc-ccccccccCCCC
Confidence            988887       667788999999999999999998777 688888888776

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=4.7e-25  Score=136.10  Aligned_cols=120  Identities=23%  Similarity=0.214  Sum_probs=100.3

Q ss_pred             HHHHHhhhhhhhhhh-hccCCchHHHHHHHcCCHHHHHHHHhcCCCCCc-------------------------------
Q psy2185          10 KSRDMETETEDELLM-LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTI-------------------------------   57 (136)
Q Consensus        10 ~~~~ll~~~~~~~~~-~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~-------------------------------   57 (136)
                      .+.+.|.+.|++++. .|..|.||||+||..|+.+++++|++.|++++.                               
T Consensus         3 ~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (209)
T d1ot8a_           3 QVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN   82 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCC
T ss_pred             HHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            355667789999997 589999999999999999999999998744443                               


Q ss_pred             ------------------------------------ccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCC
Q psy2185          58 ------------------------------------RNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLF  101 (136)
Q Consensus        58 ------------------------------------~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  101 (136)
                                                          ++..|.||+++++..+...+++.+++.+.++       ...+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~-------~~~d~~  155 (209)
T d1ot8a_          83 LNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANR-------DAQDDK  155 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTT
T ss_pred             cccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccc-------cccccc
Confidence                                                4445677777777777777777777777766       667889


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccCC
Q psy2185         102 PASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRFA  136 (136)
Q Consensus       102 ~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~  136 (136)
                      |.||||.|+..|+.+++++|+++|+|++.+|..|.
T Consensus       156 g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~  190 (209)
T d1ot8a_         156 DETPLFLAAREGSYEASKALLDNFANREITDHMDR  190 (209)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             cccccchhccccHHHHHHHHHHCCCCCCCcCCCCC
Confidence            99999999999999999999999999999998773

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.4e-25  Score=145.86  Aligned_cols=119  Identities=15%  Similarity=0.099  Sum_probs=93.5

Q ss_pred             hhhhhhhh-ccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCC-------HHHHHHHHHhC----
Q psy2185          18 TEDELLML-TKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGR-------LETVDTLVRTH----   85 (136)
Q Consensus        18 ~~~~~~~~-~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~-------~~~~~~Ll~~~----   85 (136)
                      .+.++|.. |..|.||||+||..|+.+++++|++.|++++.+|..|+||||.|+..++       .++++++....    
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d  174 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  174 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcc
Confidence            45567755 8899999999999999999999999999999999999999999998654       23344333210    


Q ss_pred             ---CChhH-----------------------------------------------------------------hhhhhcc
Q psy2185          86 ---PGLIQ-----------------------------------------------------------------AYNARAQ   97 (136)
Q Consensus        86 ---~~~~~-----------------------------------------------------------------~~~~~~~   97 (136)
                         ..+.-                                                                 .....+.
T Consensus       175 ~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~  254 (301)
T d1sw6a_         175 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA  254 (301)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTC
T ss_pred             cccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccC
Confidence               00000                                                                 0001245


Q ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccCC
Q psy2185          98 STLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRFA  136 (136)
Q Consensus        98 ~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~  136 (136)
                      +|..|+||||+|++.|+.+++++|+++|++++++|+.|.
T Consensus       255 ~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~  293 (301)
T d1sw6a_         255 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGL  293 (301)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence            688999999999999999999999999999999999873

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-25  Score=129.13  Aligned_cols=99  Identities=19%  Similarity=0.129  Sum_probs=91.0

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCC-CHHH
Q psy2185          29 NETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA-SPLH  107 (136)
Q Consensus        29 g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~-t~l~  107 (136)
                      +.++||+|+..|+.+++++|+++|++++.++..|.||+|+|+ .|+.+++++|++.|+++       +..+..+. ||||
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-------~~~~~~~~~~~L~   74 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-------NCADPATLTRPVH   74 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-------CCCCTTTCCCHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccc-------ccccccccccccc
Confidence            568999999999999999999999999999999999999775 79999999999999987       55666665 6999


Q ss_pred             HHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         108 LASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       108 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +|++.|+.+++++|+++|++++.+|..|
T Consensus        75 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~G  102 (125)
T d1bi7b_          75 DAAREGFLDTLVVLHRAGARLDVRDAWG  102 (125)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCCCTTC
T ss_pred             cccccccccccccccccccccccccCCC
Confidence            9999999999999999999999999887

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.92  E-value=9.8e-25  Score=140.64  Aligned_cols=131  Identities=18%  Similarity=0.095  Sum_probs=107.7

Q ss_pred             hhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHH
Q psy2185           4 YNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVR   83 (136)
Q Consensus         4 ~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~   83 (136)
                      ..+..+.++.++ +.|+++|..|..|.||||+|+..|+.+++++|++++++....+..+.+|++.++..++.++++.|++
T Consensus        49 ~~G~~~~v~~Ll-~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~  127 (291)
T d1s70b_          49 SSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLIS  127 (291)
T ss_dssp             HHTCHHHHHHHH-HHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHH-HCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccchhhcccc
Confidence            344455555554 6889999999999999999999999999999999999988888888899999999999998888887


Q ss_pred             hCCChhHhhh----------------------------------------------------------------------
Q psy2185          84 THPGLIQAYN----------------------------------------------------------------------   93 (136)
Q Consensus        84 ~~~~~~~~~~----------------------------------------------------------------------   93 (136)
                      .+........                                                                      
T Consensus       128 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~  207 (291)
T d1s70b_         128 QGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAA  207 (291)
T ss_dssp             TTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHH
T ss_pred             cCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHH
Confidence            6542200000                                                                      


Q ss_pred             ----------------hhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          94 ----------------ARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        94 ----------------~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                                      +.+.++..|+||||+|++.|+.+++++|+++|+|++.+|..|
T Consensus       208 ~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G  265 (291)
T d1s70b_         208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVG  265 (291)
T ss_dssp             HHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             HcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCC
Confidence                            123467789999999999999999999999999999999877

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-24  Score=134.32  Aligned_cols=119  Identities=21%  Similarity=0.121  Sum_probs=79.9

Q ss_pred             hhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhh----
Q psy2185          17 ETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAY----   92 (136)
Q Consensus        17 ~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~----   92 (136)
                      +.|++++.+|..|+||||+|+..|+.+++++|+++|++.+.....+.++++.|...++.++++.+...........    
T Consensus        28 ~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (228)
T d1k1aa_          28 QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN  107 (228)
T ss_dssp             HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCC
T ss_pred             HCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhccccccccccccc
Confidence            4556666666666666666666666666666666666666665666666666666555555544443321000000    


Q ss_pred             ------------------------------------------------------------hhhccCCCCCCCHHHHHHHc
Q psy2185          93 ------------------------------------------------------------NARAQSTLFPASPLHLASRN  112 (136)
Q Consensus        93 ------------------------------------------------------------~~~~~~~~~~~t~l~~A~~~  112 (136)
                                                                                  .....++..|.||||+|+..
T Consensus       108 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~  187 (228)
T d1k1aa_         108 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGR  187 (228)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHH
T ss_pred             cccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHc
Confidence                                                                        01134577899999999999


Q ss_pred             CcHHHHHHHHhCCCCcchhhccC
Q psy2185         113 GHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       113 g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      |+.+++++|+++|+|++.+|..|
T Consensus       188 g~~~~v~~Ll~~Gad~n~~d~~G  210 (228)
T d1k1aa_         188 GLLPLVRTLVRSGADSSLKNCHN  210 (228)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             CCHHHHHHHHHCCCCCCCCCCCC
Confidence            99999999999999999999877

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.92  E-value=7.7e-27  Score=132.87  Aligned_cols=101  Identities=18%  Similarity=0.152  Sum_probs=91.2

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |+..+-.+.++.++ +.|++++.++..|+||||+|+..|+.++++++++.|++++.++..|+||||+|+..|+.+++++|
T Consensus         9 A~~~g~~~~v~~Ll-~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~L   87 (118)
T d1myoa_           9 ALKNGDLDEVKDYV-AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLL   87 (118)
T ss_dssp             HHHTTCHHHHHHHH-TTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHH
T ss_pred             HHHCCCHHHHHHHH-HhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhh
Confidence            34455556666655 67899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHH
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLAS  110 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~  110 (136)
                      ++.|+++       ..++..|.||||+|.
T Consensus        88 l~~Gad~-------~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          88 LSKGADK-------TVKGPDGLTALEATD  109 (118)
T ss_dssp             HTTCCCS-------SSSSSSTCCCCCTCS
T ss_pred             hcccccc-------eeeCCCCCCHHHHHh
Confidence            9999998       788999999999984

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-25  Score=138.09  Aligned_cols=122  Identities=23%  Similarity=0.203  Sum_probs=100.8

Q ss_pred             HhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhh
Q psy2185          14 METETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN   93 (136)
Q Consensus        14 ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~   93 (136)
                      .+...+.++|.+|..|.||||+||..|+.+++++|++.|++++.++..|.|||++++..++.++++.++..+........
T Consensus        24 ~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~  103 (221)
T d1iknd_          24 QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI  103 (221)
T ss_dssp             -----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCG
T ss_pred             HHHhCCCCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccc
Confidence            34456788999999999999999999999999999999999999999999999999999999999999886543210000


Q ss_pred             ---------------------------------hhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          94 ---------------------------------ARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        94 ---------------------------------~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                                                       .....+.+|.||||+|++.|+.+++++|+++|+|++.+|.+|
T Consensus       104 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G  178 (221)
T d1iknd_         104 LKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQG  178 (221)
T ss_dssp             GGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTC
T ss_pred             ccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCC
Confidence                                             012245679999999999999999999999999999999887

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.2e-24  Score=137.84  Aligned_cols=126  Identities=18%  Similarity=0.117  Sum_probs=92.0

Q ss_pred             hhhHHHHHHHHHhhhhhhh---hhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDE---LLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVD   79 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~---~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~   79 (136)
                      +..+..+.+..++ +.+++   ++.++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.++++
T Consensus        17 ~~~~~~~~v~~Ll-~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~   95 (255)
T d1oy3d_          17 VIHQHEPFLDFLL-GFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCAC   95 (255)
T ss_dssp             HHTTCHHHHHHHH-HHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHH
T ss_pred             HHcCCHHHHHHHH-HcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHH
Confidence            3444445555444 45544   5666778888888888888888888888888887777777777777777777777666


Q ss_pred             HHHHhC--------------------------------------------------------------------------
Q psy2185          80 TLVRTH--------------------------------------------------------------------------   85 (136)
Q Consensus        80 ~Ll~~~--------------------------------------------------------------------------   85 (136)
                      +|++..                                                                          
T Consensus        96 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~  175 (255)
T d1oy3d_          96 VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR  175 (255)
T ss_dssp             HHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccccccccccc
Confidence            665432                                                                          


Q ss_pred             ------CChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          86 ------PGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        86 ------~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                            ...      ....+..|.||||+|++.|+.+++++|+++|++++.+|+.|
T Consensus       176 ~Ll~~~~~~------~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g  225 (255)
T d1oy3d_         176 LLRDAGADL------NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGG  225 (255)
T ss_dssp             HHHHHTCCT------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             chhcccccc------cccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCC
Confidence                  222      12345678999999999999999999999999999888776

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.8e-24  Score=137.88  Aligned_cols=124  Identities=17%  Similarity=0.101  Sum_probs=106.5

Q ss_pred             hhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHc----CCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHH
Q psy2185           3 EYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQY----GHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETV   78 (136)
Q Consensus         3 ~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~----g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~   78 (136)
                      ...+..+.+..++.+.+++++..+..|.+++..+...    +..+++++|+++|++++.++..|.||||+|+..|+.+++
T Consensus       156 ~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v  235 (285)
T d1wdya_         156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV  235 (285)
T ss_dssp             HHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHH
Confidence            3444556777788788889999998888877665443    345788999999999999999999999999999999999


Q ss_pred             HHHHHh-CCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhc
Q psy2185          79 DTLVRT-HPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTR  133 (136)
Q Consensus        79 ~~Ll~~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~  133 (136)
                      ++|++. +.++       +..+..|.||||+|++.|+.+++++|+++|||+|.+|.
T Consensus       236 ~~lL~~~g~di-------n~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         236 QRLLEQEHIEI-------NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHSSSCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHHHHcCCCCC-------cCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999985 7777       67888999999999999999999999999999999873

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.91  E-value=2.9e-24  Score=137.30  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=101.6

Q ss_pred             hhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCh------
Q psy2185          15 ETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL------   88 (136)
Q Consensus        15 l~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~------   88 (136)
                      +.+.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.++..|.||+++|+..++.+++.++.......      
T Consensus        60 ~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~  139 (277)
T d2fo1e1          60 CIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEEL  139 (277)
T ss_dssp             HHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCC
T ss_pred             HHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhccccccccccc
Confidence            34678899999999999999999999999999999999999999999999999999999988877665432100      


Q ss_pred             -------h------------Hhh-------------------------------------------------hhhccCCC
Q psy2185          89 -------I------------QAY-------------------------------------------------NARAQSTL  100 (136)
Q Consensus        89 -------~------------~~~-------------------------------------------------~~~~~~~~  100 (136)
                             .            ...                                                 ......+.
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~  219 (277)
T d2fo1e1         140 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE  219 (277)
T ss_dssp             CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT
T ss_pred             ccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCC
Confidence                   0            000                                                 01124677


Q ss_pred             CCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         101 FPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       101 ~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .|+||||+|++.|+.+++++|+++|+|++.+|..|
T Consensus       220 ~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G  254 (277)
T d2fo1e1         220 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATD  254 (277)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSS
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCC
Confidence            89999999999999999999999999999999887

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.2e-23  Score=123.55  Aligned_cols=113  Identities=18%  Similarity=0.216  Sum_probs=99.8

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |.++.. +.+..++ ..+.+++..+..|.+|++.++..++.++++++++.+++++.++..|.||||+|+..|+.+++++|
T Consensus        43 A~~~~~-~~v~~Ll-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L  120 (156)
T d1bd8a_          43 MMFGST-AIALELL-KQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL  120 (156)
T ss_dssp             SCTTCH-HHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             cccccc-ccccccc-cccccccccccccccccccccccccccccccccccccccccccCCCCeeeccccccccccccccc
Confidence            345443 4555554 66888999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQS  124 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~  124 (136)
                      + .++++       ..++..|+||||+|+..|+.+++++|++|
T Consensus       121 ~-~~~~~-------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         121 A-AESDL-------HRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             H-TTSCT-------TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             c-ccccc-------cccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            7 57776       67888999999999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=3.1e-26  Score=151.55  Aligned_cols=116  Identities=18%  Similarity=0.166  Sum_probs=85.2

Q ss_pred             HHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCccc--CCCCCHHHHHHHcCCHHHHHHHHHhCCChhH
Q psy2185          13 DMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN--SRHETALDLAAQYGRLETVDTLVRTHPGLIQ   90 (136)
Q Consensus        13 ~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~   90 (136)
                      .++.+.|++++.+|..|+||||+||..||.+++++|++.|++++..+  .+|.||||+|+..|+.+++++|++.++....
T Consensus       110 ~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~  189 (346)
T d2ajaa1         110 CLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT  189 (346)
T ss_dssp             TTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH
T ss_pred             HHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccc
Confidence            34667788888888888888888888888888888888888887654  3578888888888888888888888766532


Q ss_pred             hhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhh
Q psy2185          91 AYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVT  132 (136)
Q Consensus        91 ~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~  132 (136)
                      .    ...+..+.||++.|++.|+.+++++|+++|++++..+
T Consensus       190 ~----~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~  227 (346)
T d2ajaa1         190 A----MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAE  227 (346)
T ss_dssp             H----HHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHH
T ss_pred             c----ccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHH
Confidence            1    1112234577788888888888888888887765543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=5.2e-23  Score=121.34  Aligned_cols=125  Identities=18%  Similarity=0.236  Sum_probs=97.0

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |+..+..+.++.++ +.|++++ .|..|.||||+|+..++.+++..++.........+..+.++++.++...+.++++++
T Consensus         9 Aa~~g~~~~v~~LL-~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   86 (153)
T d1awcb_           9 AARAGQDDEVRILM-ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVL   86 (153)
T ss_dssp             HHHHTCHHHHHHHH-HHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHCCCHHHHHHHH-HcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecc
Confidence            34455556665555 5567665 578899999999999999888888877666666666677788888888888888888


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      ...+.+.       ...+..|+||||+|+..|+.+++++|+++|++++.+|+.|
T Consensus        87 ~~~~~~~-------~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g  133 (153)
T d1awcb_          87 LKHGADV-------NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC  133 (153)
T ss_dssp             HTTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cccCCcc-------ccccccCchHHHhhhhcchhheeeeccccccCCcccCCCC
Confidence            7777766       5677788888888888888888888888888888888776

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=6.5e-23  Score=126.37  Aligned_cols=103  Identities=23%  Similarity=0.255  Sum_probs=96.2

Q ss_pred             HHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHh
Q psy2185          12 RDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQA   91 (136)
Q Consensus        12 ~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~   91 (136)
                      ...+...+.+++.++..|.|||++++..+..+++..+++.+.+++..+..|.||||+|+..|+.+++++|++.|+++   
T Consensus       106 ~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~---  182 (209)
T d1ot8a_         106 VEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR---  182 (209)
T ss_dssp             HHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---
T ss_pred             hhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCC---
Confidence            44556778888999999999999999999999999999999999999999999999999999999999999999998   


Q ss_pred             hhhhccCCCCCCCHHHHHHHcCcHHHHHHH
Q psy2185          92 YNARAQSTLFPASPLHLASRNGHRFYLQQK  121 (136)
Q Consensus        92 ~~~~~~~~~~~~t~l~~A~~~g~~~~~~~L  121 (136)
                          ..++..|+||||+|++.|+.+++++|
T Consensus       183 ----n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         183 ----EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             ----TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ----CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence                77888999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.9e-23  Score=122.82  Aligned_cols=125  Identities=18%  Similarity=0.198  Sum_probs=88.3

Q ss_pred             chhhHHHHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHH
Q psy2185           2 SEYNNLKRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTL   81 (136)
Q Consensus         2 a~~~~~~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L   81 (136)
                      |+..+-.+.++.++ +.|++++.+|..|.||||+|+ .++.+++++|++++++++..+..+.++++.++..+..+.+..+
T Consensus         8 Aa~~g~~~~v~~Ll-~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l   85 (156)
T d1ihba_           8 AAARGDLEQLTSLL-QNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTL   85 (156)
T ss_dssp             HHHHTCHHHHHHHT-TSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHHH-HCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccccccc
Confidence            34445555665554 578999999999999999875 7899999999999988888887778888777777777777777


Q ss_pred             HHhCCChhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCC-CcchhhccC
Q psy2185          82 VRTHPGLIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDF-CSSKVTRRF  135 (136)
Q Consensus        82 l~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~-~~~~~~~~g  135 (136)
                      +..+...       ...+..|.+|+|+|+..++.+++++|+++|+ +++.+|..|
T Consensus        86 ~~~~~~~-------~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g  133 (156)
T d1ihba_          86 LEFQADV-------NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKG  133 (156)
T ss_dssp             HHTTCCT-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTS
T ss_pred             ccccccc-------cccccccccccccccccccccccccccccccccccccCCCC
Confidence            7776655       3445555556666555555555555555443 455555444

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.5e-22  Score=135.39  Aligned_cols=112  Identities=21%  Similarity=0.192  Sum_probs=75.0

Q ss_pred             HhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhh
Q psy2185          14 METETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYN   93 (136)
Q Consensus        14 ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~   93 (136)
                      ++.+.|++++..+..+.||||.++..++.++++++++.|++++.++..|.||||+|++.|+.+++++|+++|+++     
T Consensus       282 ~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~-----  356 (408)
T d1n11a_         282 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-----  356 (408)
T ss_dssp             HHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-----
T ss_pred             HHHHCCCccccccccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-----
Confidence            334566667666667777777777777777777777777777777777777777777777777777777777776     


Q ss_pred             hhccCCCCCCCHHHHHHHcCcHHHHHHHH---hCCCCcchhh
Q psy2185          94 ARAQSTLFPASPLHLASRNGHRFYLQQKV---QSDFCSSKVT  132 (136)
Q Consensus        94 ~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll---~~g~~~~~~~  132 (136)
                        +.++..|.||||+|++.|+.+++++|.   +.+.++...+
T Consensus       357 --n~~d~~G~t~L~~A~~~~~~~iv~~L~~~~~~~~~~~~~~  396 (408)
T d1n11a_         357 --NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD  396 (408)
T ss_dssp             --CCCCSSSCCHHHHHHHTTCHHHHHHHHHHCCCCSSCC---
T ss_pred             --CCCCCCCCCHHHHHHHcCCHHHHHHHHHHHhccccccccc
Confidence              566667777777777777777665443   3455544433

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.89  E-value=3.9e-24  Score=141.39  Aligned_cols=106  Identities=21%  Similarity=0.193  Sum_probs=87.6

Q ss_pred             hhhhhhccCCchHHHHHHHcCCHHHHHH---HHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhc
Q psy2185          20 DELLMLTKDNETALHCAAQYGHTPVVSQ---LLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA   96 (136)
Q Consensus        20 ~~~~~~~~~g~t~l~~a~~~g~~~~~~~---ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~   96 (136)
                      ..++.++..|.|||++||..|+.+++++   |++.|++++.++..|+||||+|+..|+.+++++|++.|+++...     
T Consensus        81 ~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~-----  155 (346)
T d2ajaa1          81 SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA-----  155 (346)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHH-----
T ss_pred             hHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc-----
Confidence            4455677789999999999999987776   67889999999999999999999999999999999999887332     


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcch
Q psy2185          97 QSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSK  130 (136)
Q Consensus        97 ~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~  130 (136)
                      ..+..|+||||+|+..||.+++++|++.|+++..
T Consensus       156 ~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~  189 (346)
T d2ajaa1         156 MIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT  189 (346)
T ss_dssp             HHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH
T ss_pred             ccccCCCChhHHHHHHhhHHHHHHHHHcCCcccc
Confidence            1223478999999999999999999999987643

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.1e-22  Score=133.81  Aligned_cols=120  Identities=23%  Similarity=0.294  Sum_probs=110.0

Q ss_pred             HHHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Q psy2185           8 KRKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPG   87 (136)
Q Consensus         8 ~~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~   87 (136)
                      .+.+ ......+...+..+..|.||++.|+..++.+++++|+++|++++..+..+.||||.++..++.++++++++.|++
T Consensus       244 ~~~~-~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~  322 (408)
T d1n11a_         244 AEMV-ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD  322 (408)
T ss_dssp             HHHH-HHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC
T ss_pred             HhHh-hhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccccc
Confidence            3444 344566778888899999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185          88 LIQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus        88 ~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      +       +.++..|.||||+|++.|+.+++++|+++|+|++.+|+.|
T Consensus       323 i-------n~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G  363 (408)
T d1n11a_         323 V-------NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDG  363 (408)
T ss_dssp             T-------TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSS
T ss_pred             c-------cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC
Confidence            8       7788899999999999999999999999999999999887

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.8e-21  Score=114.11  Aligned_cols=110  Identities=19%  Similarity=0.166  Sum_probs=99.9

Q ss_pred             HHHHHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCh
Q psy2185           9 RKSRDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGL   88 (136)
Q Consensus         9 ~~~~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~   88 (136)
                      +.+ +++.+.+++++..+..+.++++.++..++.+.++.++..+.+++..+..|.+|+|+|+..++.+++++|++.++..
T Consensus        47 ei~-~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~  125 (156)
T d1ihba_          47 EIA-RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN  125 (156)
T ss_dssp             HHH-HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC
T ss_pred             ccc-ccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344 4556788999999999999999999999999999999999999999999999999999999999999999998732


Q ss_pred             hHhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCC
Q psy2185          89 IQAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSD  125 (136)
Q Consensus        89 ~~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g  125 (136)
                            ...++..|.||||+|++.|+.+++++|+++|
T Consensus       126 ------~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         126 ------VGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             ------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ------ccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence                  1677889999999999999999999999987

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.9e-22  Score=124.95  Aligned_cols=106  Identities=16%  Similarity=0.023  Sum_probs=95.1

Q ss_pred             HHHhhhhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcC-CCCCcccCCCCCHHHHHHHcCCHHHHHHHHH-hCCChh
Q psy2185          12 RDMETETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHS-CDPTIRNSRHETALDLAAQYGRLETVDTLVR-THPGLI   89 (136)
Q Consensus        12 ~~ll~~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-~~~~~~   89 (136)
                      ...+...+...+..+..|+||||+|+..|+.+++++|++.+ .+++.++..|+||||+|+..|+.+++++|++ .|+++ 
T Consensus       121 ~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~-  199 (229)
T d1ixva_         121 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEY-  199 (229)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCS-
T ss_pred             hhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCC-
Confidence            34555778888888999999999999999999999999886 5678899999999999999999999999997 58888 


Q ss_pred             HhhhhhccCCCCCCCHHHHHHHcCcHHHHHHHHhCCCC
Q psy2185          90 QAYNARAQSTLFPASPLHLASRNGHRFYLQQKVQSDFC  127 (136)
Q Consensus        90 ~~~~~~~~~~~~~~t~l~~A~~~g~~~~~~~Ll~~g~~  127 (136)
                            ..++..|+||||+|+.   .+++++|+++|+|
T Consensus       200 ------~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         200 ------DLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             ------CCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             ------CCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence                  7888999999999984   5899999999997

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=4.7e-21  Score=113.25  Aligned_cols=99  Identities=21%  Similarity=0.136  Sum_probs=87.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCcc------cCCCCCHHHHHHHc---CCHHHHHHHHHhCCChhHhhhhhccCCCC
Q psy2185          31 TALHCAAQYGHTPVVSQLLEHSCDPTIR------NSRHETALDLAAQY---GRLETVDTLVRTHPGLIQAYNARAQSTLF  101 (136)
Q Consensus        31 t~l~~a~~~g~~~~~~~ll~~~~~~~~~------~~~g~t~l~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~  101 (136)
                      ..|+.|+..++...+..++..|.++..+      +..|+||||+|+..   +..+++++|++.|+++       +.++..
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-------n~~d~~   80 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-------DKQTGK   80 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-------TCCCTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-------hhhhhh
Confidence            3467788999999998888888776543      56789999999974   6789999999999998       778899


Q ss_pred             CCCHHHHHHHcCcHHHHHHHHhCCCCcchhhccCC
Q psy2185         102 PASPLHLASRNGHRFYLQQKVQSDFCSSKVTRRFA  136 (136)
Q Consensus       102 ~~t~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~  136 (136)
                      |+||||+|+..|+.+++++|+++|++++.+|..|.
T Consensus        81 g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~  115 (154)
T d1dcqa1          81 GSTALHYCCLTDNAECLKLLLRGKASIEIANESGE  115 (154)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             hccccccccccccccccccccccCccccccCCCCC
Confidence            99999999999999999999999999999998873

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.85  E-value=6.8e-21  Score=122.46  Aligned_cols=101  Identities=24%  Similarity=0.173  Sum_probs=93.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHH
Q psy2185          28 DNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLH  107 (136)
Q Consensus        28 ~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~  107 (136)
                      .+.|+|+.||..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|++.+.+.       ...+..+.|||+
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-------~~~~~~~~~~L~  111 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-------NQPDNEGWIPLH  111 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-------TCCCTTSCCHHH
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccc-------cccccccccccc
Confidence            3569999999999999999999999999999999999999999999999999999999886       566778899999


Q ss_pred             HHHHcCcHHHHHHHHhCCCCcchhhccC
Q psy2185         108 LASRNGHRFYLQQKVQSDFCSSKVTRRF  135 (136)
Q Consensus       108 ~A~~~g~~~~~~~Ll~~g~~~~~~~~~g  135 (136)
                      .|+..++.++++.|+++|+..+.+|..|
T Consensus       112 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~  139 (291)
T d1s70b_         112 AAASCGYLDIAEYLISQGAHVGAVNSEG  139 (291)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             ccccccccchhhcccccCcccccccccC
Confidence            9999999999999999999988877654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3.7e-20  Score=108.89  Aligned_cols=98  Identities=24%  Similarity=0.287  Sum_probs=89.4

Q ss_pred             hhhhhhhhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhc
Q psy2185          17 ETEDELLMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARA   96 (136)
Q Consensus        17 ~~~~~~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~   96 (136)
                      .........+..+.++++.++...+.++++++..++++++.++..|.||||+|+..|+.+++++|++.|+++       +
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~-------~  127 (153)
T d1awcb_          55 RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-------H  127 (153)
T ss_dssp             TTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-------T
T ss_pred             cccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCC-------c
Confidence            444445556677889999999999999999999999999999999999999999999999999999999998       7


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHH
Q psy2185          97 QSTLFPASPLHLASRNGHRFYLQQK  121 (136)
Q Consensus        97 ~~~~~~~t~l~~A~~~g~~~~~~~L  121 (136)
                      ..+..|.||||+|+..|+.+++++|
T Consensus       128 ~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         128 TQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            7899999999999999999999976

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.82  E-value=1.2e-19  Score=115.66  Aligned_cols=97  Identities=26%  Similarity=0.271  Sum_probs=87.7

Q ss_pred             hhhhhccCCchHHHHHHHcCCHHHHHHHH-hcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCC
Q psy2185          21 ELLMLTKDNETALHCAAQYGHTPVVSQLL-EHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQST   99 (136)
Q Consensus        21 ~~~~~~~~g~t~l~~a~~~g~~~~~~~ll-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~   99 (136)
                      ..+..+..|.||||+++..++.+++++++ ..+.+.+.++..|+||||+|+..|+.+++++|++.|+++       +.+|
T Consensus       179 ~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadi-------n~~d  251 (277)
T d2fo1e1         179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV-------EAVD  251 (277)
T ss_dssp             GTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-------SCCC
T ss_pred             cccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCC-------CCcC
Confidence            34455668999999999999999998755 668888889999999999999999999999999999998       7889


Q ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhC
Q psy2185         100 LFPASPLHLASRNGHRFYLQQKVQS  124 (136)
Q Consensus       100 ~~~~t~l~~A~~~g~~~~~~~Ll~~  124 (136)
                      ..|+||||+|++.|+.+++++|+++
T Consensus       252 ~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         252 ATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             SSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999999874

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.1e-19  Score=112.85  Aligned_cols=96  Identities=23%  Similarity=0.188  Sum_probs=85.2

Q ss_pred             hccCCchHHHHHHHcCCHHHHHHHHhcCCCCCccc-CCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCC
Q psy2185          25 LTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRN-SRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPA  103 (136)
Q Consensus        25 ~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~  103 (136)
                      ....|.||||.|+..++.+++.+++..++.++..+ ..|.||||+|++.|+.+++++|++.|+++       ..++..|+
T Consensus       107 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~-------~~~~~~G~  179 (221)
T d1iknd_         107 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV-------NRVTYQGY  179 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCS-------CCCCTTCC
T ss_pred             cccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcc-------cccCCCCC
Confidence            34457888888888888888888888888886654 67999999999999999999999999998       78899999


Q ss_pred             CHHHHHHHcCcHHHHHHHHhCCCC
Q psy2185         104 SPLHLASRNGHRFYLQQKVQSDFC  127 (136)
Q Consensus       104 t~l~~A~~~g~~~~~~~Ll~~g~~  127 (136)
                      ||||+|+..++.+++++|++.+.+
T Consensus       180 tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         180 SPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             CGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCc
Confidence            999999999999999999998765

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.4e-19  Score=109.07  Aligned_cols=90  Identities=23%  Similarity=0.219  Sum_probs=83.5

Q ss_pred             hhhccCCchHHHHHHHcCCHHHHHHHHhcCCCCCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCC
Q psy2185          23 LMLTKDNETALHCAAQYGHTPVVSQLLEHSCDPTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFP  102 (136)
Q Consensus        23 ~~~~~~g~t~l~~a~~~g~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~  102 (136)
                      ......+.++++.|+..+...+++++++.+..++.++..|.||||+|+..|+.+++++|++.|+++       +.++..|
T Consensus       138 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~-------n~~d~~G  210 (228)
T d1k1aa_         138 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS-------SLKNCHN  210 (228)
T ss_dssp             CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-------TCCCTTS
T ss_pred             cccccchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCC-------CCCCCCC
Confidence            344567899999999999999999999999999999999999999999999999999999999998       7788999


Q ss_pred             CCHHHHHHHcCcHHHHH
Q psy2185         103 ASPLHLASRNGHRFYLQ  119 (136)
Q Consensus       103 ~t~l~~A~~~g~~~~~~  119 (136)
                      +||||+|++.|+.++++
T Consensus       211 ~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         211 DTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CCTTTTCSSHHHHHHHT
T ss_pred             CCHHHHHHhCCCccccC
Confidence            99999999999988874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.6e-17  Score=105.99  Aligned_cols=107  Identities=21%  Similarity=0.131  Sum_probs=92.9

Q ss_pred             hhhhccCCchHHHHHHHcCCHHHHHHHHhc-CCCCCcccCCCCCHHHHHHHcC----CHHHHHHHHHhCCChhHhhhhhc
Q psy2185          22 LLMLTKDNETALHCAAQYGHTPVVSQLLEH-SCDPTIRNSRHETALDLAAQYG----RLETVDTLVRTHPGLIQAYNARA   96 (136)
Q Consensus        22 ~~~~~~~g~t~l~~a~~~g~~~~~~~ll~~-~~~~~~~~~~g~t~l~~a~~~~----~~~~~~~Ll~~~~~~~~~~~~~~   96 (136)
                      ....+..|.||||+|+.+|+.+++++|++. |++++..+..+.++++.+...+    ...++++|++.|+++       .
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~-------n  213 (285)
T d1wdya_         141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-------N  213 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-------S
T ss_pred             hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCC-------C
Confidence            334556799999999999999999999965 8899999999999888766543    356899999999997       6


Q ss_pred             cCCCCCCCHHHHHHHcCcHHHHHHHHh-CCCCcchhhccC
Q psy2185          97 QSTLFPASPLHLASRNGHRFYLQQKVQ-SDFCSSKVTRRF  135 (136)
Q Consensus        97 ~~~~~~~t~l~~A~~~g~~~~~~~Ll~-~g~~~~~~~~~g  135 (136)
                      .++..|.||||+|++.|+.+++++|++ .|++++.+|..|
T Consensus       214 ~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G  253 (285)
T d1wdya_         214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG  253 (285)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTS
T ss_pred             ccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCC
Confidence            778899999999999999999999997 599999998877

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=1.1e-17  Score=108.31  Aligned_cols=49  Identities=20%  Similarity=0.304  Sum_probs=45.5

Q ss_pred             CCcccCCCCCHHHHHHHcCCHHHHHHHHHhCCChhHhhhhhccCCCCCCCHHHHHH
Q psy2185          55 PTIRNSRHETALDLAAQYGRLETVDTLVRTHPGLIQAYNARAQSTLFPASPLHLAS  110 (136)
Q Consensus        55 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~t~l~~A~  110 (136)
                      ++.+|..|+||||+|++.|+.+++++|++.|+++       ..++..|+|||++|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~-------~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADP-------FIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCT-------TCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-------CCCCCCCCCHHHHcC
Confidence            5667889999999999999999999999999998       788999999999985