Psyllid ID: psy2196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLAAEKRAAEKVAEAKK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccHHccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLAAEKRAAEKVAEAKK
Flexible Loop (DISEMBL)
masqtqgiQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYeakfmgsrddvaAKIESDtklkidemnkavennkenvirKVLDLVYDIKPELHKNFRAANQTQGIQQLLAAEKRAAEKVAEAKK
Low Complexity Region (SEG)
MASQTQGIqqllaaekraaekvaeakkrkarrlkqakeeaQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLaaekraaekvaeakk
Disordered region (IsUnstruct)
********************************************************************************************ENVIRKVLDLVYDIKPELHKNFRAA*************************
Disordered Region (DISOPRED)
****TQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREK*****************************************VIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLAA*************
Disordered Region (DISEMBL)
MASQTQGIQQLLAA*******************************KYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLAA*************
Disordered Region (DISPRO)
*****QGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLAAEKRAAEKVAE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASQTQGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQTQGIQQLLAAEKRAAEKVAEAKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	142	2.2.26 [Sep-21-2011]
Q25532	117	V-type proton ATPase subu	N/A	N/A	0.823	1.0	0.726	2e-43
Q9XZH6	117	V-type proton ATPase subu	yes	N/A	0.802	0.974	0.657	1e-37
Q617N0	126	Probable V-type proton AT	N/A	N/A	0.859	0.968	0.549	4e-32
P91303	126	Probable V-type proton AT	yes	N/A	0.859	0.968	0.549	9e-32
Q9TSV6	118	V-type proton ATPase subu	yes	N/A	0.823	0.991	0.529	4e-30
Q5TM18	118	V-type proton ATPase subu	yes	N/A	0.809	0.974	0.530	5e-30
Q9WTT4	118	V-type proton ATPase subu	yes	N/A	0.809	0.974	0.530	7e-30
Q1XHY9	118	V-type proton ATPase subu	yes	N/A	0.809	0.974	0.530	8e-30
Q862Z6	118	V-type proton ATPase subu	yes	N/A	0.809	0.974	0.530	8e-30
O95670	118	V-type proton ATPase subu	yes	N/A	0.809	0.974	0.530	9e-30

>sp|Q25532|VATG_MANSE V-type proton ATPase subunit G OS=Manduca sexta PE=3 SV=1

 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 105/117 (89%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQT GIQQLLAAEKRAAEKV+EA+KRKA+RLKQAKEEAQ+++EKYRQERE+ F+E+EA
Sbjct: 1   MASQTHGIQQLLAAEKRAAEKVSEARKRKAKRLKQAKEEAQDEVEKYRQERERQFKEFEA 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAA 117
           K MG+R+ VAAKI+++T++KIDEMNK V+  KE VI+ VL+LVYDIKPELH N+R  
Sbjct: 61  KHMGTREGVAAKIDAETRIKIDEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRVV 117

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Manduca sexta (taxid: 7130)

>sp|Q9XZH6|VATG_DROME V-type proton ATPase subunit G OS=Drosophila melanogaster GN=Vha13 PE=1 SV=1

 Score =  154 bits (390), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 100/114 (87%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLLAAEK+AAEKVAEA+KRKARRLKQAK+EA E+IEK+RQERE+ F+E+EA
Sbjct: 1   MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQERERAFKEFEA 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNF 114
           K MGSR+ VAAKI++D ++K+ +M++A++  K+  I ++L  VY+I PE+HKN+
Sbjct: 61  KHMGSREGVAAKIDADIRVKLADMDRAIQTRKDPFILEILQYVYNISPEVHKNY 114

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Drosophila melanogaster (taxid: 7227)

>sp|Q617N0|VATG_CAEBR Probable V-type proton ATPase subunit G OS=Caenorhabditis briggsae GN=vha-10 PE=3 SV=1

 Score =  136 bits (343), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 96/122 (78%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLLAAEKRAAEK+ EA+KRK +R KQAK+EAQ ++EKY+Q+RE+ F+ +E 
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREQEFKGFEQ 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQT 120
           +++G+++D+ +KI  DT+ +I+ M ++V +NK+ VI ++L LV DIKPELH N     + 
Sbjct: 61  QYLGTKEDIESKIRRDTEDQINGMKQSVASNKQAVIVRLLQLVCDIKPELHHNLTLQKKL 120

Query: 121 QG 122
            G
Sbjct: 121 HG 122

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Required for necrotic cell death.

Caenorhabditis briggsae (taxid: 6238)

>sp|P91303|VATG_CAEEL Probable V-type proton ATPase subunit G OS=Caenorhabditis elegans GN=vha-10 PE=3 SV=1

 Score =  135 bits (339), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/122 (54%), Positives = 93/122 (76%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLLAAEKRAAEK+ EA+KRK +R KQAK+EAQ ++EKY+Q+RE  F+ +E 
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQ 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQT 120
           +++G+++D+ +KI  DT+ +I  M ++V  NK+ VI ++L LV DIKPELH N     + 
Sbjct: 61  QYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTLQKKL 120

Query: 121 QG 122
            G
Sbjct: 121 HG 122

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9TSV6|VATG2_PIG V-type proton ATPase subunit G 2 OS=Sus scrofa GN=ATP6V1G2 PE=3 SV=1

 Score =  130 bits (326), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 62/117 (52%), Positives = 93/117 (79%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQ+QGIQQLL AEKRAAEKVA+A+KRKARRLKQAKEEAQ ++E+YR+ERE+ F+  + 
Sbjct: 1   MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREQEFQSKQQ 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAA 117
             MGS+ +++A++E  T+ ++  M  + + N+E V+ ++L +V D++P++H N+R A
Sbjct: 61  AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRIA 117

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Sus scrofa (taxid: 9823)

>sp|Q5TM18|VATG2_MACMU V-type proton ATPase subunit G 2 OS=Macaca mulatta GN=ATP6V1G2 PE=3 SV=1

 Score =  129 bits (324), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 92/115 (80%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQ+QGIQQLL AEKRAAEKVA+A+KRKARRLKQAKEEAQ ++E+YR+ERE+ F+  + 
Sbjct: 1   MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREQEFQSKQQ 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
             MGS+ +++A++E  T+ ++  M  + + N+E V+ ++L +V D++P++H N+R
Sbjct: 61  AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYR 115

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Macaca mulatta (taxid: 9544)

>sp|Q9WTT4|VATG2_MOUSE V-type proton ATPase subunit G 2 OS=Mus musculus GN=Atp6v1g2 PE=2 SV=1

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 92/115 (80%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLL AEKRAAEKVA+A+KRKARRLKQAKEEAQ ++E+YR+ERE+ F+  + 
Sbjct: 1   MASQTQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREQEFQSKQQ 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
             MGS+ +++A++E  T+ ++  M  + + N+E V+ ++L +V +++P++H N+R
Sbjct: 61  AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCEVRPQVHPNYR 115

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mus musculus (taxid: 10090)

>sp|Q1XHY9|VATG2_PANTR V-type proton ATPase subunit G 2 OS=Pan troglodytes GN=ATP6V1G2 PE=3 SV=1

 Score =  129 bits (323), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 91/115 (79%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQ+QGIQQLL AEKRAAEKVA+A+KRKARRLKQAKEEAQ ++E+YR+ERE  F+  + 
Sbjct: 1   MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
             MGS+ +++A++E  T+ ++  M  + + N+E V+ ++L +V D++P++H N+R
Sbjct: 61  AAMGSQGNLSAEVEQATRHQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYR 115

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Pan troglodytes (taxid: 9598)

>sp|Q862Z6|VATG1_PANTR V-type proton ATPase subunit G 1 OS=Pan troglodytes GN=ATP6V1G1 PE=3 SV=3

 Score =  129 bits (323), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 91/115 (79%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQ+QGIQQLL AEKRAAEKVA+A+KRKARRLKQAKEEAQ ++E+YR+ERE  F+  + 
Sbjct: 1   MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
             MGS+ +++A++E  T+ ++  M  + + N+E V+ ++L +V D++P++H N+R
Sbjct: 61  AAMGSQGNLSAEVEQATRHQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYR 115

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Pan troglodytes (taxid: 9598)

>sp|O95670|VATG2_HUMAN V-type proton ATPase subunit G 2 OS=Homo sapiens GN=ATP6V1G2 PE=1 SV=1

 Score =  128 bits (322), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 91/115 (79%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQ+QGIQQLL AEKRAAEKVA+A+KRKARRLKQAKEEAQ ++E+YR+ERE  F+  + 
Sbjct: 1   MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREHEFQSKQQ 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
             MGS+ +++A++E  T+ ++  M  + + N+E V+ ++L +V D++P++H N+R
Sbjct: 61  AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYR 115

Catalytic subunit of the peripheral V1 complex of vacuolar ATPase (V-ATPase). V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
90820012	119	vacuolar ATPase G subunit-like protein [	0.816	0.974	0.818	2e-46
187127220	121	vacuolar ATP synthase subunit G-like pro	0.823	0.966	0.803	6e-45
239791826	121	ACYPI000034 [Acyrthosiphon pisum]	0.823	0.966	0.794	2e-44
350399683	118	PREDICTED: V-type proton ATPase subunit	0.809	0.974	0.773	5e-44
242017026	119	vacuolar ATP synthase subunit G, putativ	0.809	0.966	0.765	9e-44
340712629	118	PREDICTED: v-type proton ATPase subunit	0.809	0.974	0.765	1e-43
66553147	118	PREDICTED: v-type proton ATPase subunit	0.816	0.983	0.767	1e-43
383861507	118	PREDICTED: V-type proton ATPase subunit	0.809	0.974	0.782	1e-43
332022296	118	V-type proton ATPase subunit G [Acromyrm	0.809	0.974	0.765	2e-43
307184810	118	Vacuolar proton pump subunit G [Camponot	0.809	0.974	0.765	7e-43

>gi|90820012|gb|ABD98763.1| vacuolar ATPase G subunit-like protein [Graphocephala atropunctata]

 Score =  189 bits (481), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 95/116 (81%), Positives = 111/116 (95%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQE+IEKYRQEREK F+E+EA
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEEIEKYRQEREKQFKEFEA 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRA 116
           K MGSR+DVAA+IE+DTK+KI+EMN+AV  +KE VI+++L++VYDIKPELH+NFRA
Sbjct: 61  KHMGSREDVAARIEADTKVKIEEMNRAVVLHKEAVIQQILEMVYDIKPELHQNFRA 116

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|187127220|ref|NP_001119628.1| vacuolar ATP synthase subunit G-like protein [Acyrthosiphon pisum] gi|89574481|gb|ABD76371.1| vacuolar ATP synthase subunit G-like protein [Acyrthosiphon pisum] gi|239788148|dbj|BAH70766.1| ACYPI000034 [Acyrthosiphon pisum] gi|239788150|dbj|BAH70767.1| ACYPI000034 [Acyrthosiphon pisum] gi|239788152|dbj|BAH70768.1| ACYPI000034 [Acyrthosiphon pisum]

 Score =  185 bits (469), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 94/117 (80%), Positives = 109/117 (93%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQ++IEKYRQEREK F+E+E 
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQDEIEKYRQEREKQFKEFEI 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAA 117
           K MGSR+DVAA+I++DTK+KI+EMNKAV  NK+ VI ++L+LVYDIKPELHKNF+A 
Sbjct: 61  KHMGSREDVAARIDADTKIKIEEMNKAVIVNKQAVIDQILELVYDIKPELHKNFKAT 117

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239791826|dbj|BAH72327.1| ACYPI000034 [Acyrthosiphon pisum]

 Score =  183 bits (464), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/117 (79%), Positives = 109/117 (93%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQ++IEKYRQEREK F+E+E 
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQDEIEKYRQEREKQFKEFEI 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAA 117
           K MGSR+DVAA+I++DTK+KI+EM+KAV  NK+ VI ++L+LVYDIKPELHKNF+A 
Sbjct: 61  KHMGSREDVAARIDADTKIKIEEMSKAVIVNKQAVIDQILELVYDIKPELHKNFKAT 117

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350399683|ref|XP_003485608.1| PREDICTED: V-type proton ATPase subunit G-like [Bombus impatiens]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 89/115 (77%), Positives = 106/115 (92%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLLAAEKRAAEKVAEA+KRKARRLKQAKEEAQ++IEKYRQEREK FRE+EA
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKVAEARKRKARRLKQAKEEAQDEIEKYRQEREKQFREFEA 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
           K MGS++DVAA+IE+DTK+K +EMN+ V  +KE+V+  +L LVY+IKPELHKN+R
Sbjct: 61  KHMGSKEDVAARIEADTKIKTEEMNQTVSMHKESVVHTILGLVYNIKPELHKNYR 115

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017026|ref|XP_002428994.1| vacuolar ATP synthase subunit G, putative [Pediculus humanus corporis] gi|212513840|gb|EEB16256.1| vacuolar ATP synthase subunit G, putative [Pediculus humanus corporis]

 Score =  181 bits (459), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 108/115 (93%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLLAAEKRAAEKVAEA++RKA+RLKQAKEEA ++IEKYRQEREK FRE+E+
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKVAEARRRKAKRLKQAKEEAHDEIEKYRQEREKQFREFES 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
           K MGS++DVAA+IE+D K+KIDEMNKAV N+K  VI+++L+LVYDIKPE+HKN++
Sbjct: 61  KHMGSKEDVAARIEADAKVKIDEMNKAVNNSKTAVIKEILELVYDIKPEIHKNYK 115

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712629|ref|XP_003394858.1| PREDICTED: v-type proton ATPase subunit G-like [Bombus terrestris]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 107/115 (93%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLLAAEKRAAEKVAEA+KRKARRLKQAKEEAQ++IEKYRQEREK FRE+EA
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKVAEARKRKARRLKQAKEEAQDEIEKYRQEREKQFREFEA 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
           K MGS++DVAA+IE+DTK+K +EMN+ V  +K++V+  +L+LVY+IKPELHKN+R
Sbjct: 61  KHMGSKEDVAARIEADTKVKTEEMNQTVSMHKDSVVHTILELVYNIKPELHKNYR 115

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66553147|ref|XP_624346.1| PREDICTED: v-type proton ATPase subunit G [Apis mellifera] gi|380011755|ref|XP_003689962.1| PREDICTED: V-type proton ATPase subunit G-like [Apis florea]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 89/116 (76%), Positives = 107/116 (92%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLLAAEKRAAEKVAEA+KRKARRLKQAKEEAQ++IEKYRQEREK FRE+EA
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKVAEARKRKARRLKQAKEEAQDEIEKYRQEREKQFREFEA 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRA 116
           K MGS++DVAA+IE+DTK+K +EMN+ V  +K++V+  +L+LVYDIK ELHKN+RA
Sbjct: 61  KHMGSKEDVAARIEADTKIKTEEMNQTVSMHKDSVVHTILELVYDIKAELHKNYRA 116

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861507|ref|XP_003706227.1| PREDICTED: V-type proton ATPase subunit G-like [Megachile rotundata]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 90/115 (78%), Positives = 106/115 (92%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLL AEKRAAEKV+EA+KRKARRLKQAKEEAQ++IEKYRQEREK FRE+EA
Sbjct: 1   MASQTQGIQQLLTAEKRAAEKVSEARKRKARRLKQAKEEAQDEIEKYRQEREKQFREFEA 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
           K MGS++DVAA IE+DTK+KI+EMNKAV  +K  V+ K+L+LVYDIKP+LHKN+R
Sbjct: 61  KHMGSKEDVAACIEADTKVKIEEMNKAVSMHKNAVMLKILELVYDIKPQLHKNYR 115

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022296|gb|EGI62608.1| V-type proton ATPase subunit G [Acromyrmex echinatior]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 106/115 (92%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLLAAEKRAAEKV++A+KRKARRLKQAKEEAQ++IEKYRQEREK FR++EA
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKVSDARKRKARRLKQAKEEAQDEIEKYRQEREKQFRDFEA 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
           K MGS++DVAA+IE+DT+LKI+EMN+ V  +K  V+ K+LDLVYDIKPELH N+R
Sbjct: 61  KHMGSKEDVAARIEADTRLKIEEMNQTVAVHKSTVMLKILDLVYDIKPELHSNYR 115

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184810|gb|EFN71124.1| Vacuolar proton pump subunit G [Camponotus floridanus]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 88/115 (76%), Positives = 105/115 (91%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLL AEKRAAEKV++A+KRKARRLKQAKEEAQ++IEKYRQEREK FRE+EA
Sbjct: 1   MASQTQGIQQLLTAEKRAAEKVSDARKRKARRLKQAKEEAQDEIEKYRQEREKQFREFEA 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
           K MGS++DVAA+IE+DT+LKI+EMN+ V  +K  V+ K+LDLVYDIKPELH N+R
Sbjct: 61  KHMGSKEDVAARIEADTRLKIEEMNQTVAVHKNMVMLKILDLVYDIKPELHNNYR 115

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
FB|FBgn0026753	117	Vha13 "Vacuolar H[+] ATPase 13	0.802	0.974	0.403	1.2e-19
UNIPROTKB|Q617N0	126	vha-10 "Probable V-type proton	0.859	0.968	0.344	2.3e-16
WB|WBGene00006919	126	vha-10 [Caenorhabditis elegans	0.859	0.968	0.344	4.7e-16
UNIPROTKB|P91303	126	vha-10 "Probable V-type proton	0.859	0.968	0.344	4.7e-16
UNIPROTKB|E1BVK7	118	ATP6V1G3 "Uncharacterized prot	0.528	0.635	0.4	4.4e-13
UNIPROTKB|F1S5F3	118	ATP6V1G3 "Uncharacterized prot	0.830	1.0	0.296	5.6e-13
UNIPROTKB|Q9TSV6	118	ATP6V1G2 "V-type proton ATPase	0.823	0.991	0.282	1.5e-12
ZFIN|ZDB-GENE-030131-6965	118	atp6v1g1 "ATPase, H+ transport	0.823	0.991	0.324	1.5e-12
UNIPROTKB|E2R2U7	118	ATP6V1G3 "Uncharacterized prot	0.830	1.0	0.313	1.9e-12
UNIPROTKB|E1C3C6	118	ATP6V1G1 "Uncharacterized prot	0.809	0.974	0.321	2.4e-12

FB|FBgn0026753 Vha13 "Vacuolar H[+] ATPase 13kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 46/114 (40%), Positives = 68/114 (59%)

Query:     1 MASQTQGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEDIEKYRQEREKIFREYEA 60
             MASQTQGI                                 E+IEK+RQERE+ F+E+EA
Sbjct:     1 MASQTQGIQQLLAAEKKAAEKVAEARKRKARRLKQAKDEATEEIEKFRQERERAFKEFEA 60

Query:    61 KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNF 114
             K MGSR+ VAAKI++D ++K+ +M++A++  K+  I ++L  VY+I PE+HKN+
Sbjct:    61 KHMGSREGVAAKIDADIRVKLADMDRAIQTRKDPFILEILQYVYNISPEVHKNY 114

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=IEA;ISS

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

UNIPROTKB|Q617N0 vha-10 "Probable V-type proton ATPase subunit G" [Caenorhabditis briggsae (taxid:6238)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 42/122 (34%), Positives = 67/122 (54%)

Query:     1 MASQTQGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEDIEKYRQEREKIFREYEA 60
             MASQTQGI                                Q ++EKY+Q+RE+ F+ +E 
Sbjct:     1 MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREQEFKGFEQ 60

Query:    61 KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQT 120
             +++G+++D+ +KI  DT+ +I+ M ++V +NK+ VI ++L LV DIKPELH N     + 
Sbjct:    61 QYLGTKEDIESKIRRDTEDQINGMKQSVASNKQAVIVRLLQLVCDIKPELHHNLTLQKKL 120

Query:   121 QG 122
              G
Sbjct:   121 HG 122

GO:0012501 "programmed cell death" evidence=ISS

WB|WBGene00006919 vha-10 [Caenorhabditis elegans (taxid:6239)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 42/122 (34%), Positives = 64/122 (52%)

Query:     1 MASQTQGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEDIEKYRQEREKIFREYEA 60
             MASQTQGI                                Q ++EKY+Q+RE  F+ +E 
Sbjct:     1 MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQ 60

Query:    61 KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQT 120
             +++G+++D+ +KI  DT+ +I  M ++V  NK+ VI ++L LV DIKPELH N     + 
Sbjct:    61 QYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTLQKKL 120

Query:   121 QG 122
              G
Sbjct:   121 HG 122

GO:0015992 "proton transport" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0070265 "necrotic cell death" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0043068 "positive regulation of programmed cell death" evidence=IGI

UNIPROTKB|P91303 vha-10 "Probable V-type proton ATPase subunit G" [Caenorhabditis elegans (taxid:6239)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 42/122 (34%), Positives = 64/122 (52%)

Query:     1 MASQTQGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEDIEKYRQEREKIFREYEA 60
             MASQTQGI                                Q ++EKY+Q+RE  F+ +E 
Sbjct:     1 MASQTQGIQQLLAAEKRAAEKINEARKRKLQRTKQAKQEAQAEVEKYKQQREAEFKAFEQ 60

Query:    61 KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAANQT 120
             +++G+++D+ +KI  DT+ +I  M ++V  NK+ VI ++L LV DIKPELH N     + 
Sbjct:    61 QYLGTKEDIESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTLQKKL 120

Query:   121 QG 122
              G
Sbjct:   121 HG 122

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=NAS

GO:0015992 "proton transport" evidence=NAS

GO:0006754 "ATP biosynthetic process" evidence=NAS

GO:0012501 "programmed cell death" evidence=IMP

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=NAS

UNIPROTKB|E1BVK7 ATP6V1G3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 30/75 (40%), Positives = 52/75 (69%)

Query:    43 DIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDL 102
             +I+ YR +REK FR  +   MGS+ +++A++E  T   I  +  + + NKE+ ++K+L++
Sbjct:    43 EIDHYRLQREKEFRNKQMNVMGSQGNLSAQLEEQTTETIRNLTSSYQKNKESTMKKLLNI 102

Query:   103 VYDIKPELHKNFRAA 117
             +YD+KPE+H NFR A
Sbjct:   103 IYDVKPEVHPNFRYA 117

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

UNIPROTKB|F1S5F3 ATP6V1G3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 35/118 (29%), Positives = 62/118 (52%)

Query:     1 MASQTQGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEDIEKYRQEREKIFREYEA 60
             M SQ+QGI                                  +I++YR + ++ FR+ +A
Sbjct:     1 MTSQSQGIHQLLQAEKRAKDKLEEAKKRKARRLRQAKEEAMAEIDQYRMQIDQEFRQKQA 60

Query:    61 KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAAN 118
             K MGS+ +++ +IE+    KI E++++  N+ E+VI ++L +V D+KPE+H N+R  N
Sbjct:    61 KIMGSQSNISEEIEAQALGKIKELSRSYSNSMESVINQILGMVCDVKPEIHANYRIDN 118

GO:0051117 "ATPase binding" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

UNIPROTKB|Q9TSV6 ATP6V1G2 "V-type proton ATPase subunit G 2" [Sus scrofa (taxid:9823)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 33/117 (28%), Positives = 62/117 (52%)

Query:     1 MASQTQGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEDIEKYRQEREKIFREYEA 60
             MASQ+QGI                                Q ++E+YR+ERE+ F+  + 
Sbjct:     1 MASQSQGIQQLLQAEKRAAEKVADARKRKARRLKQAKEEAQMEVEQYRREREQEFQSKQQ 60

Query:    61 KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAA 117
               MGS+ +++A++E  T+ ++  M  + + N+E V+ ++L +V D++P++H N+R A
Sbjct:    61 AAMGSQGNLSAEVEQATRRQVQGMQSSQQRNRERVLAQLLGMVCDVRPQVHPNYRIA 117

GO:0042470 "melanosome" evidence=IEA

GO:0030285 "integral to synaptic vesicle membrane" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

ZFIN|ZDB-GENE-030131-6965 atp6v1g1 "ATPase, H+ transporting, V1 subunit G isoform 1" [Danio rerio (taxid:7955)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 38/117 (32%), Positives = 58/117 (49%)

Query:     1 MASQTQGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEDIEKYRQEREKIFREYEA 60
             MASQ+QGI                                Q +IE+YR +REK F+  EA
Sbjct:     1 MASQSQGIQQLLQAEKRAAEKVAEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKTKEA 60

Query:    61 KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAA 117
               +GS  + A +++ +T  K+  +  + + NKE V+  +L +V DIKPE+H N+R A
Sbjct:    61 AALGSHGNSAVEVDKETVDKMGRIQGSYQQNKEAVLGNLLKMVCDIKPEIHANYRVA 117

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

UNIPROTKB|E2R2U7 ATP6V1G3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 37/118 (31%), Positives = 59/118 (50%)

Query:     1 MASQTQGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEDIEKYRQEREKIFREYEA 60
             M SQ+QGI                                  +I++YR +R+K FR  ++
Sbjct:     1 MTSQSQGIHQLLQAEKRAKDKLEEAKKRKEKRLKQAKEEAMAEIDQYRMQRDKEFRLKQS 60

Query:    61 KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRAAN 118
             K MGS+ +V+ +IE  T  KI E+N +     E+V++ +L+ V D+ PE+H N+RA N
Sbjct:    61 KIMGSQSNVSEEIEEQTLGKIKELNGSYNKYMESVLKHLLNSVCDVNPEIHVNYRATN 118

GO:0051117 "ATPase binding" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

UNIPROTKB|E1C3C6 ATP6V1G1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 37/115 (32%), Positives = 57/115 (49%)

Query:     1 MASQTQGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEDIEKYRQEREKIFREYEA 60
             MASQ+QGI                                Q +IE+YR +REK F+  EA
Sbjct:     1 MASQSQGIQQLLQAEKRAAEKVAEARKRKNRRLKQAKEEAQAEIEQYRLQREKEFKAKEA 60

Query:    61 KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFR 115
               +GS      ++E +T+ K+  + +  + N+E V+ ++L LV DIKPE+H N+R
Sbjct:    61 AALGSHGSCTTEVEKETQEKMSVIQQNFQKNREVVLSQLLSLVCDIKPEIHVNYR 115

GO:0015992 "proton transport" evidence=IEA

GO:0016471 "vacuolar proton-transporting V-type ATPase complex" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q25532	VATG_MANSE	No assigned EC number	0.7264	0.8239	1.0	N/A	N/A
Q862Z6	VATG1_PANTR	No assigned EC number	0.5304	0.8098	0.9745	yes	N/A
Q9WTT4	VATG2_MOUSE	No assigned EC number	0.5304	0.8098	0.9745	yes	N/A
Q5XGW0	VATG3_XENLA	No assigned EC number	0.5478	0.8098	0.9745	N/A	N/A
O95670	VATG2_HUMAN	No assigned EC number	0.5304	0.8098	0.9745	yes	N/A
O75348	VATG1_HUMAN	No assigned EC number	0.5478	0.8098	0.9745	no	N/A
P48836	VATG_YEAST	No assigned EC number	0.3423	0.7816	0.9736	yes	N/A
Q54Z13	VATG_DICDI	No assigned EC number	0.3366	0.6830	0.9065	yes	N/A
P91303	VATG_CAEEL	No assigned EC number	0.5491	0.8591	0.9682	yes	N/A
P79251	VATG1_BOVIN	No assigned EC number	0.5391	0.8098	0.9745	no	N/A
Q5TM18	VATG2_MACMU	No assigned EC number	0.5304	0.8098	0.9745	yes	N/A
O82629	VATG2_ARATH	No assigned EC number	0.3636	0.6549	0.8773	yes	N/A
Q9XZH6	VATG_DROME	No assigned EC number	0.6578	0.8028	0.9743	yes	N/A
Q5WR09	VATG1_CANFA	No assigned EC number	0.5299	0.8239	0.9915	yes	N/A
Q617N0	VATG_CAEBR	No assigned EC number	0.5491	0.8591	0.9682	N/A	N/A
Q9CR51	VATG1_MOUSE	No assigned EC number	0.5478	0.8098	0.9745	no	N/A
Q8BMC1	VATG3_MOUSE	No assigned EC number	0.5254	0.8309	1.0	no	N/A
Q9TSV6	VATG2_PIG	No assigned EC number	0.5299	0.8239	0.9915	yes	N/A
A4QNE9	VATG3_XENTR	No assigned EC number	0.5614	0.8028	0.9661	yes	N/A
Q96LB4	VATG3_HUMAN	No assigned EC number	0.5169	0.8309	1.0	no	N/A
Q1XHY9	VATG2_PANTR	No assigned EC number	0.5304	0.8098	0.9745	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	142
pfam03179	105	pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subu	2e-27
TIGR01147	113	TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, su	9e-26
PRK12704	520	PRK12704, PRK12704, phosphodiesterase; Provisional	0.001
PRK00409	782	PRK00409, PRK00409, recombination and DNA strand e	0.001

>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit

 Score = 97.3 bits (243), Expect = 2e-27
 Identities = 59/105 (56%), Positives = 82/105 (78%)

Query: 3   SQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKF 62
           SQ+QGIQQLL AEK AAE V EA+KR+A+RLKQAKEEA+++IE+YR +RE  F+E+EA+ 
Sbjct: 1   SQSQGIQQLLQAEKEAAEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEH 60

Query: 63  MGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIK 107
            GSR ++  KIE +T+ KIDE+ ++   NKE V++ +L  V D+K
Sbjct: 61  SGSRGELEKKIEKETEEKIDELKRSFNKNKEAVVQMLLSKVTDVK 105

This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation. Length = 105

>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G

 Score = 93.7 bits (233), Expect = 9e-26
 Identities = 72/113 (63%), Positives = 91/113 (80%)

Query: 1   MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA 60
           MASQTQGIQQLL AEKRAAEKV+EA+KRK +RLKQAKEEAQ+++EKY+Q+REK F+E+EA
Sbjct: 1   MASQTQGIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEA 60

Query: 61  KFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDLVYDIKPELHKN 113
           K +G       K E++T+ KI E+ KAV+ NK+ VI+ +L LV DI PELH N
Sbjct: 61  KHLGGNGAAEEKAEAETQAKIREIKKAVQKNKDAVIKDLLHLVCDISPELHIN 113

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system [Energy metabolism, ATP-proton motive force interconversion]. Length = 113

>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 20/54 (37%), Positives = 28/54 (51%)

Query: 9  QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKF 62
           ++  AE+ A   + EAKK      K+A  EA+E+I K R E EK  RE   + 
Sbjct: 31 AKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNEL 84

Length = 520

>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed

 Score = 37.5 bits (88), Expect = 0.001
 Identities = 17/73 (23%), Positives = 41/73 (56%)

Query: 20  EKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKL 79
           EK  + ++ + + L++A++EAQ+ I++ ++E ++I +E      G    V A    + + 
Sbjct: 555 EKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARK 614

Query: 80  KIDEMNKAVENNK 92
           ++++ N+  E  K
Sbjct: 615 RLNKANEKKEKKK 627

Length = 782

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	100.0
KOG1772|consensus	108		100.0
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	99.97
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	98.09
PRK01005	207	V-type ATP synthase subunit E; Provisional	97.67
PRK08404	103	V-type ATP synthase subunit H; Validated	97.6
CHL00019	184	atpF ATP synthase CF0 B subunit	96.19
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	95.98
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	95.98
PRK09173	159	F0F1 ATP synthase subunit B; Validated	95.9
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	95.88
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	95.81
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	95.64
PRK07352	174	F0F1 ATP synthase subunit B; Validated	95.6
PRK01194	185	V-type ATP synthase subunit E; Provisional	95.57
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	95.44
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	95.25
PRK03963	198	V-type ATP synthase subunit E; Provisional	95.18
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	95.06
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	95.05
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	94.82
PRK00106	535	hypothetical protein; Provisional	94.77
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	94.75
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	94.68
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	94.67
PRK01558	198	V-type ATP synthase subunit E; Provisional	94.57
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	94.44
PRK06231	205	F0F1 ATP synthase subunit B; Validated	94.43
PRK02292	188	V-type ATP synthase subunit E; Provisional	94.22
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	93.94
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	93.83
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	93.67
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	93.65
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	93.6
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	93.07
PRK06669	281	fliH flagellar assembly protein H; Validated	92.66
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	92.65
PRK06568	154	F0F1 ATP synthase subunit B; Validated	92.27
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	92.17
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	92.16
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	91.96
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	91.96
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	91.76
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	91.6
PRK12704	520	phosphodiesterase; Provisional	90.97
PRK09173	159	F0F1 ATP synthase subunit B; Validated	90.85
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	90.1
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	89.62
PRK06568	154	F0F1 ATP synthase subunit B; Validated	89.1
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	88.45
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	88.35
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	88.03
PRK08475	167	F0F1 ATP synthase subunit B; Validated	87.79
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	87.62
PRK03963	198	V-type ATP synthase subunit E; Provisional	87.32
PRK02292	188	V-type ATP synthase subunit E; Provisional	87.11
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	87.07
PRK00106	535	hypothetical protein; Provisional	86.91
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	86.47
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	85.53
PRK08475	167	F0F1 ATP synthase subunit B; Validated	85.43
PRK08404	103	V-type ATP synthase subunit H; Validated	85.42
CHL00019	184	atpF ATP synthase CF0 B subunit	85.39
PRK01005	207	V-type ATP synthase subunit E; Provisional	85.17
PRK05759	156	F0F1 ATP synthase subunit B; Validated	84.9
PRK01558	198	V-type ATP synthase subunit E; Provisional	84.36
PRK09098	233	type III secretion system protein HrpB; Validated	84.33
PRK06669	281	fliH flagellar assembly protein H; Validated	84.15
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	83.15
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	82.64
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	82.56
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	82.49
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	81.94
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	80.03

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=100.00  E-value=6.9e-45  Score=270.23  Aligned_cols=113  Identities=64%  Similarity=0.896  Sum_probs=112.2

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q psy2196           1 MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLK   80 (142)
Q Consensus         1 Masqs~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~k   80 (142)
                      |+|||+|||+||.||++|+.||+.||++|++||||||+||++||+.||.++|.+|++|+++++|+++.+..+++++|+.+
T Consensus         1 M~sq~~GIQ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~ea~~~g~~~~~~~~l~~et~~k   80 (113)
T TIGR01147         1 MASQTQGIQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQAK   80 (113)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccccccchh
Q psy2196          81 IDEMNKAVENNKENVIRKVLDLVYDIKPELHKN  113 (142)
Q Consensus        81 I~~i~~~~~~nk~~Vv~~Ll~~V~dVkpevh~N  113 (142)
                      |+.|+.+|++|++.||++||++||+|+|+||+|
T Consensus        81 i~~ik~~~~~~~~~Vv~~Ll~~V~~v~pe~h~n  113 (113)
T TIGR01147        81 IREIKKAVQKNKDAVIKDLLHLVCDISPELHIN  113 (113)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhCCCCCCCCC
Confidence            999999999999999999999999999999998

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>KOG1772|consensus

Probab=100.00  E-value=3.2e-42  Score=252.90  Aligned_cols=108  Identities=54%  Similarity=0.767  Sum_probs=107.5

Q ss_pred             CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q psy2196           1 MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLK   80 (142)
Q Consensus         1 Masqs~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~k   80 (142)
                      |+|||+||||||+||++|.+||++||++|.+||||||+||+.||+.||.++|.+|+.|++.++|+.+.++.+++.+|+.+
T Consensus         1 M~Sq~qGIqQLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~~G~~~~~~~~~e~~t~~k   80 (108)
T KOG1772|consen    1 MASQSQGIQQLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAASGSQGALEKRLEQETDDK   80 (108)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhccccc
Q psy2196          81 IDEMNKAVENNKENVIRKVLDLVYDIKP  108 (142)
Q Consensus        81 I~~i~~~~~~nk~~Vv~~Ll~~V~dVkp  108 (142)
                      |..|++++++|++.||++||.+||||+|
T Consensus        81 i~~lk~~~~k~~~~Vv~~LL~~V~~v~~  108 (108)
T KOG1772|consen   81 IAGLKTSAQKNSDDVVDMLLKYVCDVKP  108 (108)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhccCCC
Confidence            9999999999999999999999999998

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=99.97  E-value=1.1e-30  Score=188.74  Aligned_cols=105  Identities=48%  Similarity=0.682  Sum_probs=86.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHH
Q psy2196           3 SQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKID   82 (142)
Q Consensus         3 sqs~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~   82 (142)
                      |||+|||+||.||++|.+||.+||++|.+||++|+.+|+.||+.||.++|.+|+.+...++|+.+.....|..+|..+|.
T Consensus         1 ~~~~~Iq~Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~~et~~~i~   80 (105)
T PF03179_consen    1 SQSDGIQQLLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELEKETEEKIE   80 (105)
T ss_dssp             -----SSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhHHHHHHHHHHhhcccc
Q psy2196          83 EMNKAVENNKENVIRKVLDLVYDIK  107 (142)
Q Consensus        83 ~i~~~~~~nk~~Vv~~Ll~~V~dVk  107 (142)
                      .|+.+|++|++.||++||+.||||+
T Consensus        81 ~i~~~~~~~~~~vv~~ll~~V~~Vk  105 (105)
T PF03179_consen   81 EIKKSASKNKDKVVDMLLSRVCDVK  105 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------
T ss_pred             HHHHHHHHhHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999996

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=98.09  E-value=0.00023  Score=52.97  Aligned_cols=105  Identities=23%  Similarity=0.295  Sum_probs=90.1

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q psy2196           2 ASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKI   81 (142)
Q Consensus         2 asqs~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI   81 (142)
                      -..+.-|-.+-.||..|.+.|.+|+..+.+++++|+.+|...|+.+-..-+..++++....---......++-.++..++
T Consensus         3 m~~~Evl~eIk~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~   82 (108)
T COG2811           3 MDDSEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEA   82 (108)
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34467788899999999999999999999999999999999999999999999998887776666677778888888888


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhccccc
Q psy2196          82 DEMNKAVENNKENVIRKVLDLVYDIKP  108 (142)
Q Consensus        82 ~~i~~~~~~nk~~Vv~~Ll~~V~dVkp  108 (142)
                      ..|...  -|.++|+.++++-++.+-|
T Consensus        83 ~~~~~k--a~~~k~~~~a~~~~~~~l~  107 (108)
T COG2811          83 SAILSK--AAEGKVVEAALSEFLAILE  107 (108)
T ss_pred             HHHHHH--hHhhHHHHHHHHHHHHHhc
Confidence            888776  6888999999888776543

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=97.67  E-value=0.0039  Score=50.66  Aligned_cols=71  Identities=21%  Similarity=0.280  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLK   80 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~k   80 (142)
                      .|-.|+.+|..||++|++...+-+.+|+.+|+.-++.++.+-+.+.+...+............+..++...
T Consensus        21 iL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqevi~~   91 (207)
T PRK01005         21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQAVENK   91 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35579999999999999999999999999999999999999999999888877666666666666665554

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=97.60  E-value=0.0057  Score=44.60  Aligned_cols=98  Identities=26%  Similarity=0.348  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHH
Q psy2196           7 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNK   86 (142)
Q Consensus         7 GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~   86 (142)
                      -|...-.||.++..++..|+......|.+|+.+|..+.+.-..+-..+...........-......+-.+...+|..|..
T Consensus         4 ~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~   83 (103)
T PRK08404          4 VIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKV   83 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35666778888888888888888888888888888888887777777777666665555555566677778889999999


Q ss_pred             HHHhhHHHHHHHHHHhhc
Q psy2196          87 AVENNKENVIRKVLDLVY  104 (142)
Q Consensus        87 ~~~~nk~~Vv~~Ll~~V~  104 (142)
                      ....+.+.+|++++..+.
T Consensus        84 ~a~~k~~~av~~~~~~~~  101 (103)
T PRK08404         84 KAEENFETAVSEAIKLIR  101 (103)
T ss_pred             HHHHHHHHHHHHHHHHHc
Confidence            999999999999988764

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=96.19  E-value=0.21  Score=39.14  Aligned_cols=20  Identities=25%  Similarity=0.116  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRK   29 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K   29 (142)
                      +|-.|..+|.+|+..|+..-
T Consensus        84 ~L~~A~~ea~~ii~~A~~~a  103 (184)
T CHL00019         84 RLRQAELEADEIRVNGYSEI  103 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            45555555666655555543

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=95.98  E-value=0.25  Score=34.38  Aligned_cols=51  Identities=31%  Similarity=0.438  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE   59 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e   59 (142)
                      -+|=.||.++..+|..|+......|.+|+.+|...++.-...-+.+-....
T Consensus         2 ~~ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii   52 (85)
T TIGR02926         2 EEIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEII   52 (85)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346678888888888888888888888888888888887776666655444

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=95.98  E-value=0.29  Score=37.43  Aligned_cols=32  Identities=25%  Similarity=0.393  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          24 EAKKRKARRLKQAKEEAQEDIEKYRQEREKIF   55 (142)
Q Consensus        24 eARk~K~krLKqAK~EA~~EIe~yr~~kE~eF   55 (142)
                      +....-..+|.+|+.+|..-|+..+.+.+...
T Consensus        60 ~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~   91 (164)
T PRK14471         60 NLQADNERLLKEARAERDAILKEAREIKEKMI   91 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333444444444444444444444443

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=95.90  E-value=0.35  Score=36.81  Aligned_cols=42  Identities=26%  Similarity=0.290  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQE   50 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~   50 (142)
                      .+|-.|..+|+.|+..|+..-...+.+|+.+|..+++.....
T Consensus        61 ~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~  102 (159)
T PRK09173         61 RKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKL  102 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555666666665555555555555555555554443

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=95.88  E-value=0.36  Score=37.30  Aligned_cols=25  Identities=8%  Similarity=0.161  Sum_probs=11.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          32 RLKQAKEEAQEDIEKYRQEREKIFR   56 (142)
Q Consensus        32 rLKqAK~EA~~EIe~yr~~kE~eFk   56 (142)
                      +|.+|+.+|..-|+..+.+.+....
T Consensus        70 ~L~~A~~ea~~Ii~~A~~~a~~~~~   94 (167)
T PRK14475         70 EREEAERQAAAMLAAAKADARRMEA   94 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444433

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=95.81  E-value=0.4  Score=35.75  Aligned_cols=72  Identities=28%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----hhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2196          31 RRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGS----RDDVAAKIESDTKLKIDEMNKAVENNKENVIRKVLDL  102 (142)
Q Consensus        31 krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs----~~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll~~  102 (142)
                      .+|.+|+.+|..-++..+.+-+........+....    -......++.+...-+..++.....-.-.++..||..
T Consensus        54 ~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~kll~~  129 (147)
T TIGR01144        54 VILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIER  129 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444433333222111    1122233444444444444444444444444444443

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=95.64  E-value=0.62  Score=37.17  Aligned_cols=85  Identities=22%  Similarity=0.376  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVE   89 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~   89 (142)
                      ..|.+..+|.+|++.||..-.+-|.+|+++|+.-++.-+.+-.+.|.........           ....+.+.|.....
T Consensus        24 e~L~~~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~~ll~-----------~~~~~~e~l~~~l~   92 (191)
T PF06188_consen   24 EQLAAQQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQANALLQ-----------EWQQQREQLLQQLE   92 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999997777777777653333222           23333344444444


Q ss_pred             hhHHHHHHHHHHhhcc
Q psy2196          90 NNKENVIRKVLDLVYD  105 (142)
Q Consensus        90 ~nk~~Vv~~Ll~~V~d  105 (142)
                      ..-+.|+...|..+++
T Consensus        93 ~~~~~ll~~al~~lL~  108 (191)
T PF06188_consen   93 EQAEELLSQALERLLD  108 (191)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4444444444444444

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=95.60  E-value=0.55  Score=36.40  Aligned_cols=36  Identities=28%  Similarity=0.328  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEK   46 (142)
Q Consensus        11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~   46 (142)
                      |-.|.++|++|+.+|+..-.+.......+|..|++.
T Consensus        80 L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~  115 (174)
T PRK07352         80 LAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMAR  115 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444333333333333333333

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=95.57  E-value=0.24  Score=39.24  Aligned_cols=103  Identities=11%  Similarity=0.087  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------------CChhHHHHHHHHHHHHH
Q psy2196          13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFM------------GSRDDVAAKIESDTKLK   80 (142)
Q Consensus        13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~------------Gs~~~~~~~le~eT~~k   80 (142)
                      .|+.+|..|+.+|++.-..-++.|+.+|+...+.|-..-+.+-........            +.....-.++=..+..+
T Consensus        13 ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~   92 (185)
T PRK01194         13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEH   92 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999988887776665544432            23344444555556666


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhcccccccchhhhh
Q psy2196          81 IDEMNKAVENNKENVIRKVLDLVYDIKPELHKNFRA  116 (142)
Q Consensus        81 I~~i~~~~~~nk~~Vv~~Ll~~V~dVkpevh~N~~~  116 (142)
                      |..|-..- ..++-+.++|+..++...|++-.-++.
T Consensus        93 L~~l~~~~-~Y~~~L~~LI~~a~~~l~~~~~v~~~~  127 (185)
T PRK01194         93 LMNITKSK-EYDSILNKMIEVAIKTLGEDCIIKVSE  127 (185)
T ss_pred             HHcccCCc-hHHHHHHHHHHHHHHhcCCCeEEEEcH
Confidence            66665322 666667777777666655655444443

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=95.44  E-value=0.59  Score=36.24  Aligned_cols=18  Identities=28%  Similarity=0.333  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy2196          11 LLAAEKRAAEKVAEAKKR   28 (142)
Q Consensus        11 LL~AEkeA~~iV~eARk~   28 (142)
                      |-.|+.+|++|+..|+..
T Consensus        79 L~~a~~ea~~ii~~A~~~   96 (175)
T PRK14472         79 LAKADAEADKIIREGKEY   96 (175)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444443

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.25  E-value=0.95  Score=34.70  Aligned_cols=47  Identities=32%  Similarity=0.444  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE   59 (142)
Q Consensus        13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e   59 (142)
                      +|+.+|.+|+++|+..-.+-+.+++.+|..+++.+....+.+.....
T Consensus         5 eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   51 (198)
T PF01991_consen    5 EAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEK   51 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999998887777777665443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=95.18  E-value=1.2  Score=34.88  Aligned_cols=92  Identities=13%  Similarity=0.182  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH--------hcCChhHHHHHHHHHHHHH
Q psy2196          13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR----EYEAK--------FMGSRDDVAAKIESDTKLK   80 (142)
Q Consensus        13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk----~~ea~--------~~Gs~~~~~~~le~eT~~k   80 (142)
                      .|..+|..|+++|+..-.+.+.+|+.+|+.+.+.+...-+.+-.    ...+.        .+.-......++=.++..+
T Consensus        14 ~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~~   93 (198)
T PRK03963         14 EAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEAVRER   93 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68899999999999998888888888888766655443332222    11111        1233345555666667777


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhhccc
Q psy2196          81 IDEMNKAVENNKENVIRKVLDLVYDI  106 (142)
Q Consensus        81 I~~i~~~~~~nk~~Vv~~Ll~~V~dV  106 (142)
                      |..+...  .+++-+.++|...+..+
T Consensus        94 l~~~~~~--~Y~~~l~~li~~a~~~l  117 (198)
T PRK03963         94 LAELPED--EYFETLKALTKEAVEEL  117 (198)
T ss_pred             HHhhhhh--hHHHHHHHHHHHHHHHh
Confidence            7776654  66666666666665554

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=95.06  E-value=1.1  Score=34.16  Aligned_cols=28  Identities=39%  Similarity=0.726  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          30 ARRLKQAKEEAQEDIEKYRQEREKIFRE   57 (142)
Q Consensus        30 ~krLKqAK~EA~~EIe~yr~~kE~eFk~   57 (142)
                      ...|.+|+.+|..=|+..+.+-+.....
T Consensus        63 ~~~l~~a~~ea~~ii~~a~~~a~~~~~~   90 (159)
T PRK13461         63 ERELKNAKEEGKKIVEEYKSKAENVYEE   90 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444433

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=95.05  E-value=1  Score=35.03  Aligned_cols=18  Identities=17%  Similarity=0.274  Sum_probs=7.8

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKK   27 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk   27 (142)
                      +|-.|+.+|+.|+.+|+.
T Consensus        78 ~l~~a~~ea~~ii~~a~~   95 (173)
T PRK13453         78 KLKETQEEVQKILEDAKV   95 (173)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344444444444444443

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=94.82  E-value=0.28  Score=39.15  Aligned_cols=56  Identities=32%  Similarity=0.393  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2196           7 GIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKF   62 (142)
Q Consensus         7 GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~   62 (142)
                      +=..|..|+..|..|+..|+..=....+++..+|..|+..+|.+-|.+|+....+.
T Consensus        25 ~~~~~~~A~~~A~~i~~~A~~eAe~~~ke~~~eakee~~~~r~~~E~E~~~~~~el   80 (201)
T PF12072_consen   25 NRKKLEQAEKEAEQILEEAEREAEAIKKEAELEAKEEAQKLRQELERELKERRKEL   80 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44568899999999999999998889999999999999999999999999777664

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PRK00106 hypothetical protein; Provisional

Probab=94.77  E-value=0.66  Score=42.80  Aligned_cols=52  Identities=25%  Similarity=0.252  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA   60 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea   60 (142)
                      -+||.|++.|.+|+.+|+..-..-+++|..+|+.++..++.+-++++.....
T Consensus        35 ~~~~~A~~~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~   86 (535)
T PRK00106         35 LTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYRE   86 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788899999988888887655555666666655555555555555444433

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=94.75  E-value=1.4  Score=36.24  Aligned_cols=40  Identities=30%  Similarity=0.312  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q psy2196          11 LLAAEKRAAEKVAEAKKRKARRLKQA---KEEAQEDIEKYRQE   50 (142)
Q Consensus        11 LL~AEkeA~~iV~eARk~K~krLKqA---K~EA~~EIe~yr~~   50 (142)
                      |=.|..+|+.||.+|+..-...+.++   ..+|..|.+..+..
T Consensus        46 l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~   88 (255)
T TIGR03825        46 LEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQE   88 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66788888888888887766555444   34444444444433

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=94.68  E-value=1.1  Score=34.99  Aligned_cols=25  Identities=16%  Similarity=0.299  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          31 RRLKQAKEEAQEDIEKYRQEREKIF   55 (142)
Q Consensus        31 krLKqAK~EA~~EIe~yr~~kE~eF   55 (142)
                      .+|.+|+.+|..=|+..+.+-+...
T Consensus        86 ~~L~~A~~ea~~Ii~~A~~~a~~~~  110 (184)
T PRK13455         86 RKQREVQEQADRIVAAAKDEAQAAA  110 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3355555555555555444444433

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=94.67  E-value=0.61  Score=36.71  Aligned_cols=42  Identities=26%  Similarity=0.236  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          18 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE   59 (142)
Q Consensus        18 A~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e   59 (142)
                      ...-.......-..+|.+||.||..-|+..+.+-+++.....
T Consensus        77 ~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~  118 (181)
T PRK13454         77 LKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAI  118 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444555556666666666555555555544333

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=94.57  E-value=1.7  Score=34.59  Aligned_cols=40  Identities=35%  Similarity=0.362  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE   52 (142)
Q Consensus        13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE   52 (142)
                      +|+.+|..|+++|++.-..-+.+|+.+|+.-++..+.+-+
T Consensus        19 eA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~   58 (198)
T PRK01558         19 EAERLANEIILEAKEEAEEIIAKAEEEAKELKAKAEKEAN   58 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999988887655555

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=94.44  E-value=1.7  Score=33.65  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q psy2196          71 AKIESDTKLKIDEMNKAVENNKENVIRKVLDL  102 (142)
Q Consensus        71 ~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll~~  102 (142)
                      .+++.+...-+..++..+..-.-.+...+|..
T Consensus       119 ~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~  150 (173)
T PRK13460        119 KEIELAKGKALSQLQNQIVEMTITIASKVLEK  150 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444443

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=94.43  E-value=1.5  Score=35.34  Aligned_cols=18  Identities=22%  Similarity=0.099  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy2196          11 LLAAEKRAAEKVAEAKKR   28 (142)
Q Consensus        11 LL~AEkeA~~iV~eARk~   28 (142)
                      |-.|..+|.+|+..|+..
T Consensus       109 L~~A~~eA~~Ii~~A~~e  126 (205)
T PRK06231        109 HENALAQAKEIIDQANYE  126 (205)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            444444444444444443

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=94.22  E-value=1.6  Score=33.96  Aligned_cols=49  Identities=27%  Similarity=0.338  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK   61 (142)
Q Consensus        13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~   61 (142)
                      +|+.+|.+|.++|++.-..-+.+|+.+|+...+.+...-+.+.......
T Consensus        13 ~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r   61 (188)
T PRK02292         13 EARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQ   61 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888999999999999999999999999999888888888887766543

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=93.94  E-value=1.2  Score=34.12  Aligned_cols=24  Identities=33%  Similarity=0.513  Sum_probs=10.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          32 RLKQAKEEAQEDIEKYRQEREKIF   55 (142)
Q Consensus        32 rLKqAK~EA~~EIe~yr~~kE~eF   55 (142)
                      +|.+|+.+|..-++.-+.+-+...
T Consensus        82 ~L~~A~~ea~~ii~~A~~~a~~~~  105 (156)
T CHL00118         82 ELSKARKEAQLEITQSQKEAKEIV  105 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444443333

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=93.83  E-value=1.6  Score=39.01  Aligned_cols=99  Identities=15%  Similarity=0.186  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q psy2196           9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAV   88 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~   88 (142)
                      ..|-.|..+|++|+.+|+..-.+...++..+|..|++....+-..+...........-......+--+.-.  +.|....
T Consensus        60 ~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~--kil~~~l  137 (445)
T PRK13428         60 KAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAG--ELVRNHV  137 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHc
Confidence            44777778888888888777655555555555555555554444444433322221111111111111111  2233333


Q ss_pred             --HhhHHHHHHHHHHhhcccccc
Q psy2196          89 --ENNKENVIRKVLDLVYDIKPE  109 (142)
Q Consensus        89 --~~nk~~Vv~~Ll~~V~dVkpe  109 (142)
                        ....+.+|+..|+.+-...|.
T Consensus       138 ~d~~~~~~lId~~i~~l~~~~~~  160 (445)
T PRK13428        138 ADPAQQSATVDRFLDELDAMAPS  160 (445)
T ss_pred             CCHHHHHHHHHHHHHHhhccCCC
Confidence              244568888888888776663

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=93.67  E-value=2.4  Score=34.67  Aligned_cols=54  Identities=20%  Similarity=0.276  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2196           9 QQLLAAEKRAAEKVAEAKKR----KARRLKQAKEEAQEDIEKYRQEREKIFREYEAKF   62 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~----K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~   62 (142)
                      ++|-.|+.+|..|+.+|+..    +...+.+|+.+|.+.++..+..-+.+......+.
T Consensus        64 ~~l~~a~~ea~~i~~~A~~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l  121 (246)
T TIGR03321        64 EKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDEL  121 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778899999999966664    6677888888888888877777777766555443

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=93.65  E-value=2.5  Score=32.30  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          22 VAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY   58 (142)
Q Consensus        22 V~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~   58 (142)
                      .......-..+|.+|+.+|..-|+..+.+-+..+...
T Consensus        58 a~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~~~~   94 (164)
T PRK14473         58 LANAKRDYEAELAKARQEAAKIVAQAQERARAQEAEI   94 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444455555555555555555554444433

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=93.60  E-value=2.5  Score=35.04  Aligned_cols=103  Identities=12%  Similarity=0.180  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q psy2196           6 QGIQQLLAAEKRAAEKVAEAKKR----KARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKI   81 (142)
Q Consensus         6 ~GIQqLL~AEkeA~~iV~eARk~----K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI   81 (142)
                      ..-++|-.|++++..|+..|+..    +..-+.+|+.+|...++..+..-+.+-............+..-.+-   ..-|
T Consensus        61 e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A---~kiL  137 (250)
T PRK14474         61 RYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKII---RAAL  137 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            34567888999999999988875    5666788888888888887777777777666655444443333222   2222


Q ss_pred             HHHHHHHH-hhHHHHHHHHHHhhcccccccchhh
Q psy2196          82 DEMNKAVE-NNKENVIRKVLDLVYDIKPELHKNF  114 (142)
Q Consensus        82 ~~i~~~~~-~nk~~Vv~~Ll~~V~dVkpevh~N~  114 (142)
                      .   ...+ .....+|+.+++.+....|+-..++
T Consensus       138 ~---~~~d~~~~~~lid~~i~~l~~l~~~~r~~l  168 (250)
T PRK14474        138 A---DLANATLEQQIVGIFIARLEHLSEAERQAL  168 (250)
T ss_pred             H---hhcCHHHHHHHHHHHHHHhcccCHHHHHHH
Confidence            2   2112 2234788888888877766644444

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.07  E-value=2  Score=30.95  Aligned_cols=37  Identities=35%  Similarity=0.444  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          16 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE   52 (142)
Q Consensus        16 keA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE   52 (142)
                      .++..++.+||.....-+.+|+.+|..+++....+-+
T Consensus        54 ~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~   90 (132)
T PF00430_consen   54 AEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAE   90 (132)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444443333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=92.66  E-value=4.7  Score=33.44  Aligned_cols=41  Identities=20%  Similarity=0.256  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           5 TQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIE   45 (142)
Q Consensus         5 s~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe   45 (142)
                      ..-+..|++|..+|..|+.+||..-.+.+.+|+.+++...+
T Consensus        77 ~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~  117 (281)
T PRK06669         77 EEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIE  117 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566677777777777777777666666666655555443

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=92.65  E-value=3.8  Score=31.67  Aligned_cols=50  Identities=22%  Similarity=0.278  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEA   60 (142)
Q Consensus        11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea   60 (142)
                      +..+-.++...+.+||.....-+.+|+.+|..+++.++.+-+.++.....
T Consensus        56 a~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~~e~~r~~~  105 (161)
T COG0711          56 AQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKE  105 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444556667777777777777778888888888888777777765543

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=92.27  E-value=2.6  Score=32.95  Aligned_cols=33  Identities=9%  Similarity=0.160  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q psy2196          71 AKIESDTKLKIDEMNKAVENNKENVIRKVLDLV  103 (142)
Q Consensus        71 ~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll~~V  103 (142)
                      .+++.+...-+.++++.+..-.=.+.......|
T Consensus       107 ~~Ie~Ek~~Al~elr~eva~Lav~iAsk~~~~~  139 (154)
T PRK06568        107 QLIQNQKSTASKELQDEFCDEVIKLVSEYFQSV  139 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445555555555555555444444444444433

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=92.17  E-value=3.5  Score=30.40  Aligned_cols=70  Identities=19%  Similarity=0.309  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2196          30 ARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSR----DDVAAKIESDTKLKIDEMNKAVENNKENVIRKV   99 (142)
Q Consensus        30 ~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~----~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~~L   99 (142)
                      ..+|.+|+.+|..-++..+.+-+.+.....+.....-    ......++.+...-+..+++.+..-...++..|
T Consensus        63 e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~la~~~a~kl  136 (140)
T PRK07353         63 EQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDALSRQILEKL  136 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345555555555555555555554443333221111    122334444555555555544444444444333

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=92.16  E-value=5.3  Score=32.23  Aligned_cols=84  Identities=12%  Similarity=0.160  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy2196          18 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKF----MGSRDDVAAKIESDTKLKIDEMNKAVENNKE   93 (142)
Q Consensus        18 A~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~----~Gs~~~~~~~le~eT~~kI~~i~~~~~~nk~   93 (142)
                      ...-.......-.+.|.+||.+|..-|+..|.+-+.+......+.    ..--.....++..+-..-+..+......--.
T Consensus        99 ~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~  178 (204)
T PRK09174         99 LKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAA  178 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444455555555555555555544444333222221    1112334445555555555555555555555


Q ss_pred             HHHHHHHH
Q psy2196          94 NVIRKVLD  101 (142)
Q Consensus        94 ~Vv~~Ll~  101 (142)
                      .++..||.
T Consensus       179 ~I~~Kllg  186 (204)
T PRK09174        179 AIVEQLIG  186 (204)
T ss_pred             HHHHHHhC
Confidence            55555543

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=91.96  E-value=4.3  Score=30.68  Aligned_cols=56  Identities=21%  Similarity=0.158  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           6 QGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK   61 (142)
Q Consensus         6 ~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~   61 (142)
                      +.|..-|..=.++..-+...+......|.+|+.+|...++..+.+-..+.......
T Consensus        41 ~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~   96 (141)
T PRK08476         41 ASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEA   96 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555555545566666677777777788888888888877777766666544433

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=91.96  E-value=3  Score=28.88  Aligned_cols=51  Identities=25%  Similarity=0.296  Sum_probs=36.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           5 TQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF   55 (142)
Q Consensus         5 s~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eF   55 (142)
                      +..-..|-.|..+|..||..|+.....-..++..+|..|.......-..+.
T Consensus         9 ~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei   59 (85)
T TIGR02926         9 EDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEI   59 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445567888999999999999988877777777777666665544444443

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=91.76  E-value=4.7  Score=30.75  Aligned_cols=41  Identities=37%  Similarity=0.440  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKR----KARRLKQAKEEAQEDIEKYRQE   50 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~----K~krLKqAK~EA~~EIe~yr~~   50 (142)
                      .|-.|..+|..|+..|+..    +...+.+|+.+|...++..+.+
T Consensus        68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~  112 (164)
T PRK14473         68 ELAKARQEAAKIVAQAQERARAQEAEIIAQARREAEKIKEEARAQ  112 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555543    2333444444444444433333

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=91.60  E-value=6.2  Score=31.85  Aligned_cols=65  Identities=20%  Similarity=0.245  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHH
Q psy2196           9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKI   73 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~l   73 (142)
                      +.|-.|..+|+.|+..||..-.......+.+|..|++....+-+.+........++.-.....++
T Consensus       112 ~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~  176 (204)
T PRK09174        112 QELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEET  176 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778888888888888887666666666666666666666666666655555554444444333

>PRK12704 phosphodiesterase; Provisional

Probab=90.97  E-value=9.5  Score=34.96  Aligned_cols=52  Identities=38%  Similarity=0.403  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK   61 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~   61 (142)
                      .+-.|+.+|..|+.+|+..-....++++.+|+.|+..+|.+-+.+|+..+..
T Consensus        32 ~l~~Ae~eAe~I~keA~~eAke~~ke~~leaeeE~~~~R~Ele~e~~~~e~~   83 (520)
T PRK12704         32 KIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNE   83 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4457999999999999887667789999999999999999998887554443

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=90.85  E-value=5.8  Score=30.10  Aligned_cols=82  Identities=17%  Similarity=0.111  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2196          22 VAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSR----DDVAAKIESDTKLKIDEMNKAVENNKENVIR   97 (142)
Q Consensus        22 V~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~----~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~   97 (142)
                      .......-..+|.+|+.+|..-|+..+.+.+.....-.....-..    .....+++.+...-+..+++....---.++.
T Consensus        52 A~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~  131 (159)
T PRK09173         52 AQQLLAEYQRKRKEAEKEAADIVAAAEREAEALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAE  131 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333444556677777776666666666655443332222211    2234456666666666666665555555555


Q ss_pred             HHHHhh
Q psy2196          98 KVLDLV  103 (142)
Q Consensus        98 ~Ll~~V  103 (142)
                      .+|..-
T Consensus       132 kil~~~  137 (159)
T PRK09173        132 KLLAEK  137 (159)
T ss_pred             HHHHhh
Confidence            555443

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=90.10  E-value=5.4  Score=28.60  Aligned_cols=91  Identities=26%  Similarity=0.327  Sum_probs=51.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHH
Q psy2196           5 TQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEM   84 (142)
Q Consensus         5 s~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i   84 (142)
                      ++.|+..+.-=.....-+......-..+|.+|+.+|..-++..+.+-+........+           .+.+....+..-
T Consensus        32 ~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~e-----------a~~~~~~~~~~a  100 (132)
T PF00430_consen   32 KAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAE-----------AEKEAERIIEQA  100 (132)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHH-----------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence            345554443333344445555566677899999999999999888888888765433           334444444445


Q ss_pred             HHHHHhhHHHHHHHHHHhhccc
Q psy2196          85 NKAVENNKENVIRKVLDLVYDI  106 (142)
Q Consensus        85 ~~~~~~nk~~Vv~~Ll~~V~dV  106 (142)
                      ......-++.++..|-..|+++
T Consensus       101 ~~~i~~e~~~a~~~l~~~~~~l  122 (132)
T PF00430_consen  101 EAEIEQEKEKAKKELRQEIVDL  122 (132)
T ss_dssp             HHHHHHHHHHHHHHHT------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=89.62  E-value=14  Score=33.78  Aligned_cols=52  Identities=35%  Similarity=0.378  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK   61 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~   61 (142)
                      .|-.|+.+|..|+.+|...=....++++.+|+.|+..+|.+-+.+|+..+..
T Consensus        26 ~l~~Ae~eAe~i~keA~~eAke~~ke~~~EaeeE~~~~R~Ele~el~~~e~r   77 (514)
T TIGR03319        26 KLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE   77 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456888888888888776666778888889899999998888887555443

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=89.10  E-value=9.2  Score=29.85  Aligned_cols=31  Identities=13%  Similarity=0.240  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          14 AEKRAAEKVAEAKKRKARRLKQAKEEAQEDI   44 (142)
Q Consensus        14 AEkeA~~iV~eARk~K~krLKqAK~EA~~EI   44 (142)
                      |+.+|+.|+.+|+....+-..+++++|..|+
T Consensus        68 Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea   98 (154)
T PRK06568         68 LETLRSQMIEESNEVTKKIIQEKTKEIEEFL   98 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333333333333333333

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=88.45  E-value=9.8  Score=29.30  Aligned_cols=42  Identities=31%  Similarity=0.318  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER   51 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~k   51 (142)
                      +|-.|..+|++|+..|+..-.+...++...|..|.+.....-
T Consensus        70 ~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A  111 (167)
T PRK14475         70 EREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMA  111 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555554444444444444444444433

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=88.35  E-value=11  Score=29.65  Aligned_cols=42  Identities=29%  Similarity=0.273  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE   52 (142)
Q Consensus        11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE   52 (142)
                      |-.|..+|..|+..|+..-.+...+...+|+.|++....+-+
T Consensus        92 L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~  133 (181)
T PRK13454         92 LADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESE  133 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555544444444444444444444444333

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=88.03  E-value=11  Score=29.29  Aligned_cols=84  Identities=17%  Similarity=0.189  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy2196          19 AEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMG----SRDDVAAKIESDTKLKIDEMNKAVENNKEN   94 (142)
Q Consensus        19 ~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~G----s~~~~~~~le~eT~~kI~~i~~~~~~nk~~   94 (142)
                      ..-....+..-.++|.+|+.+|..-++..+.+-+........+..-    .......+++.+...-+..++..+..---.
T Consensus        65 ~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~  144 (173)
T PRK13453         65 KLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVL  144 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444455577777777777777666666665544433221    122334455555555555555555555555


Q ss_pred             HHHHHHHh
Q psy2196          95 VIRKVLDL  102 (142)
Q Consensus        95 Vv~~Ll~~  102 (142)
                      ++..+|..
T Consensus       145 ~a~kll~~  152 (173)
T PRK13453        145 IASKVLRK  152 (173)
T ss_pred             HHHHHHHh
Confidence            55555443

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=87.79  E-value=11  Score=29.19  Aligned_cols=30  Identities=27%  Similarity=0.359  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          30 ARRLKQAKEEAQEDIEKYRQEREKIFREYE   59 (142)
Q Consensus        30 ~krLKqAK~EA~~EIe~yr~~kE~eFk~~e   59 (142)
                      ...|.+|+.+|..-|+..+.+-+.......
T Consensus        80 e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii  109 (167)
T PRK08475         80 LKKLEEAKEKAELIVETAKKEAYILTQKIE  109 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555555555555544433

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=87.62  E-value=11  Score=28.78  Aligned_cols=45  Identities=27%  Similarity=0.267  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKI   54 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~e   54 (142)
                      .|-.|..+|+.|+..|+........++..+|..|++....+-..+
T Consensus        68 ~l~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~  112 (164)
T PRK14471         68 LLKEARAERDAILKEAREIKEKMIADAKEEAQVEGDKMIEQAKAS  112 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777777777776655555444444444444444433333

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=87.32  E-value=12  Score=29.11  Aligned_cols=47  Identities=26%  Similarity=0.144  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          15 EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK   61 (142)
Q Consensus        15 EkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~   61 (142)
                      +.-..+|..+|+....+.|.+|+.+|+..++....+-+.+.......
T Consensus         5 ~~i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~   51 (198)
T PRK03963          5 ELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRK   51 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45578999999999999999999999999999888888776655543

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=87.11  E-value=12  Score=28.96  Aligned_cols=90  Identities=21%  Similarity=0.346  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          11 LLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR-EYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVE   89 (142)
Q Consensus        11 LL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk-~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~   89 (142)
                      |=+|++++..|+++|++.=.+-..++..+|.+|...+.......-. ......+.-......++=..+..+|..+-..  
T Consensus        22 ~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~kL~~~~~~--   99 (188)
T PRK02292         22 RAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVEDEIASLDGD--   99 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh--
Confidence            4478999999999999987777788888888888887665444433 2223456667777788888888888877654  


Q ss_pred             hhHHHHHHHHHHhh
Q psy2196          90 NNKENVIRKVLDLV  103 (142)
Q Consensus        90 ~nk~~Vv~~Ll~~V  103 (142)
                      .. ..++..||...
T Consensus       100 ~y-~~~l~~li~~~  112 (188)
T PRK02292        100 KR-EELTKSLLDAA  112 (188)
T ss_pred             hH-HHHHHHHHHhc
Confidence            22 34555555444

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=87.07  E-value=12  Score=28.86  Aligned_cols=33  Identities=33%  Similarity=0.411  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQ   41 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~   41 (142)
                      +.|-+|..+|+.||+.|+..-..-...++.+|+
T Consensus        65 ~~l~~Ar~~a~~Ii~~A~~~a~~~~~e~~~~a~   97 (161)
T COG0711          65 QELEEAREQASEIIEQAKKEAEQIAEEIKAEAE   97 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555555555555543333333333333

>PRK00106 hypothetical protein; Provisional

Probab=86.91  E-value=20  Score=33.27  Aligned_cols=48  Identities=31%  Similarity=0.313  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFRE   57 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~   57 (142)
                      -+-.|+.+|..|+.+|...--...++++.+|+.|+..+|.+-+.+|+.
T Consensus        47 IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~e   94 (535)
T PRK00106         47 LRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKS   94 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345799999999999988776778999999999999999999888743

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=86.47  E-value=14  Score=29.01  Aligned_cols=83  Identities=13%  Similarity=0.201  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy2196          18 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENVIR   97 (142)
Q Consensus        18 A~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~   97 (142)
                      +..-...++..-...|..|+.+|..=..+-|..-..++-.       .......+|..--...|+.|.....+-+....+
T Consensus        56 ~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e~~~~~~a~~~~-------~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~  128 (155)
T PRK06569         56 LTIEVEKLNKYYNEEIDKTNTEIDRLKKEKIDSLESEFLI-------KKKNLEQDLKNSINQNIEDINLAAKQFRTNKSE  128 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4444444555555555555555554433333333333321       122233334444455566666666666666666


Q ss_pred             HHHHhhcccc
Q psy2196          98 KVLDLVYDIK  107 (142)
Q Consensus        98 ~Ll~~V~dVk  107 (142)
                      -|+++.|+|=
T Consensus       129 ~~i~~~~~i~  138 (155)
T PRK06569        129 AIIKLAVNII  138 (155)
T ss_pred             HHHHHHHHHH
Confidence            7777766664

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=85.53  E-value=12  Score=28.59  Aligned_cols=73  Identities=12%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCChhHHHHHHHHHHHHHHHHH
Q psy2196          12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE-AKFMGSRDDVAAKIESDTKLKIDEM   84 (142)
Q Consensus        12 L~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e-a~~~Gs~~~~~~~le~eT~~kI~~i   84 (142)
                      -+|+.++..|+.++...-..++......+.++++..+........... ...+.-......++-.++...|..+
T Consensus        15 ~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~~~~~L~~~   88 (198)
T PF01991_consen   15 AEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEEVKEKLKSF   88 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356666666666666655555555555555555555444433332111 1222333344444444444444443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=85.43  E-value=15  Score=28.43  Aligned_cols=48  Identities=21%  Similarity=0.189  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE   59 (142)
Q Consensus        12 L~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e   59 (142)
                      -....++..++.+||......+.+|+.+|+.+.+..-.+-..+.....
T Consensus        73 ~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~  120 (167)
T PRK08475         73 KEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLI  120 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566777888888888888888888888887776666666655444

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=85.42  E-value=12  Score=27.15  Aligned_cols=51  Identities=29%  Similarity=0.354  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           9 QQLLAAEKRAAEKVAEAKKRK----ARRLKQAKEEAQEDIEKYRQEREKIFREYE   59 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~K----~krLKqAK~EA~~EIe~yr~~kE~eFk~~e   59 (142)
                      +.|-.|..+|..||..|+..-    ..-+.+|+.+|..-++..+.+-+.+-..-.
T Consensus        17 ~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~   71 (103)
T PRK08404         17 ERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKIL   71 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777777777653    444666666666666666665555554433

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=85.39  E-value=16  Score=28.54  Aligned_cols=30  Identities=30%  Similarity=0.129  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          30 ARRLKQAKEEAQEDIEKYRQEREKIFREYE   59 (142)
Q Consensus        30 ~krLKqAK~EA~~EIe~yr~~kE~eFk~~e   59 (142)
                      ..+|.+|+.+|..-|+..+.+-+.+.....
T Consensus        82 e~~L~~A~~ea~~ii~~A~~~ae~~~~~il  111 (184)
T CHL00019         82 RARLRQAELEADEIRVNGYSEIEREKENLI  111 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334555555555555555555555544443

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=85.17  E-value=19  Score=29.29  Aligned_cols=39  Identities=21%  Similarity=0.330  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKY   47 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~y   47 (142)
                      .-|-.|.++|..||.+|+....+.+.+|+.+++.|....
T Consensus        31 ~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~r~   69 (207)
T PRK01005         31 AIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLKQG   69 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777777777777777777777777777766643

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=84.90  E-value=14  Score=27.58  Aligned_cols=82  Identities=27%  Similarity=0.284  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy2196          16 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENV   95 (142)
Q Consensus        16 keA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~~nk~~V   95 (142)
                      .++..++.+|+......+.+|+.+|..+.+....+-+.+-.....       .....+..+...-+..++..+..--..+
T Consensus        59 ~e~~~~l~~a~~ea~~i~~~a~~ea~~~~~~~~~~a~~ea~~~~~-------~a~~~i~~e~~~a~~~l~~~~~~lA~~~  131 (156)
T PRK05759         59 AKYEAQLAEARAEAAEIIEQAKKRAAQIIEEAKAEAEAEAARIKA-------QAQAEIEQERKRAREELRKQVADLAVAG  131 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445566666666666666666666666666666665555544332       2344566666777777777666666666


Q ss_pred             HHHHHHhhc
Q psy2196          96 IRKVLDLVY  104 (142)
Q Consensus        96 v~~Ll~~V~  104 (142)
                      +..+|..-+
T Consensus       132 a~k~l~~~~  140 (156)
T PRK05759        132 AEKILGREL  140 (156)
T ss_pred             HHHHHHhHc
Confidence            666666543

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=84.36  E-value=19  Score=28.65  Aligned_cols=32  Identities=28%  Similarity=0.353  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQ   41 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~   41 (142)
                      -|-+|+++|.+||.+|++.-..-++.|+.+|.
T Consensus        27 Ii~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~   58 (198)
T PRK01558         27 IILEAKEEAEEIIAKAEEEAKELKAKAEKEAN   58 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36678899999999998886666666554444

>PRK09098 type III secretion system protein HrpB; Validated

Probab=84.33  E-value=22  Score=29.29  Aligned_cols=39  Identities=26%  Similarity=0.361  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          18 AAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR   56 (142)
Q Consensus        18 A~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk   56 (142)
                      ..+++++||+.=.+-|-+|+.+|+.=++..+.+-|..|+
T Consensus        41 ~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~   79 (233)
T PRK09098         41 RDAVLAAARARAERIVAEARAQAEAILEAARREADRSAR   79 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555555555555555444

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=84.15  E-value=23  Score=29.38  Aligned_cols=50  Identities=18%  Similarity=0.318  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE   59 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~e   59 (142)
                      .+-.+..+|..++.+|+..-..-|-.|+.+++..+..++.+.|.-+..-.
T Consensus        71 ~~~~~~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a~  120 (281)
T PRK06669         71 IVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAK  120 (281)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445778999999999999999999999999999999988888776433

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=83.15  E-value=19  Score=27.77  Aligned_cols=74  Identities=19%  Similarity=0.242  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCh----hHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy2196          27 KRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSR----DDVAAKIESDTKLKIDEMNKAVENNKENVIRKVL  100 (142)
Q Consensus        27 k~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~----~~~~~~le~eT~~kI~~i~~~~~~nk~~Vv~~Ll  100 (142)
                      ..-..+|.+|+.+|..-++..+.+-+...........-..    ......++.+...-+..++..+..---.++..+|
T Consensus        73 ~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~kil  150 (175)
T PRK14472         73 RKNRELLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKII  150 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334456666666666666666666666554443332211    1223334444444444444444433333333333

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=82.64  E-value=18  Score=27.20  Aligned_cols=82  Identities=13%  Similarity=0.156  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVE   89 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~   89 (142)
                      ++-....+...++..||..-......+..+|..|.+....+--.+.......       ....++.+...-...++..+.
T Consensus        56 ea~~~~~e~e~~l~~Ar~eA~~~~~~a~~~A~~ea~~~~~~A~~~~~~~~~~-------a~~~l~~e~~~~~~~l~~qv~  128 (141)
T PRK08476         56 DVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAKKAELESKYEA-------FAKQLANQKQELKEQLLSQMP  128 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhHH
Confidence            3444556666677777766555555555555555544444443333322222       223334444444444444444


Q ss_pred             hhHHHHHHH
Q psy2196          90 NNKENVIRK   98 (142)
Q Consensus        90 ~nk~~Vv~~   98 (142)
                      .-++.++..
T Consensus       129 ~~~~~~~~~  137 (141)
T PRK08476        129 EFKEALNAK  137 (141)
T ss_pred             HHHHHHHHH
Confidence            444444433

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=82.56  E-value=19  Score=27.35  Aligned_cols=77  Identities=16%  Similarity=0.309  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy2196          16 KRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAVENNKENV   95 (142)
Q Consensus        16 keA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~~~nk~~V   95 (142)
                      .++..++.+||..-...+.+|+.+|+.+.+....+-..+.......       ...+++.+...-+..++.....-...+
T Consensus        77 ~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~-------a~~~i~~ek~~a~~~l~~~v~~lA~~i  149 (156)
T CHL00118         77 KQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNE-------ATKQLEAQKEKALKSLEEQVDTLSDQI  149 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555666666555555555554444433322       223444444555555555544444444


Q ss_pred             HHHH
Q psy2196          96 IRKV   99 (142)
Q Consensus        96 v~~L   99 (142)
                      ...|
T Consensus       150 a~ki  153 (156)
T CHL00118        150 EEKL  153 (156)
T ss_pred             HHhh
Confidence            4443

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=82.49  E-value=17  Score=26.70  Aligned_cols=45  Identities=42%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRK----ARRLKQAKEEAQEDIEKYRQEREKI   54 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K----~krLKqAK~EA~~EIe~yr~~kE~e   54 (142)
                      +|-.|..+|..|+..|+..-    ...+.+|+.+|...++..+..=+.+
T Consensus        65 ~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e  113 (140)
T PRK07353         65 QLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQ  113 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666666555543    3333344444444444333333333

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=81.94  E-value=20  Score=27.12  Aligned_cols=43  Identities=19%  Similarity=0.244  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQER   51 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~k   51 (142)
                      ++|-.|.++|..|+.+|+..-.........+|..|++....+-
T Consensus        64 ~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a  106 (159)
T PRK13461         64 RELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERA  106 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566777777777777776644444444444444444433333

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=80.03  E-value=19  Score=25.56  Aligned_cols=52  Identities=17%  Similarity=0.278  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy2196          12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFM   63 (142)
Q Consensus        12 L~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~   63 (142)
                      =+|.+....++.+||..=...+...+.+++.+...|..+-+.+.........
T Consensus        21 ~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~~~~~~~~l~   72 (105)
T PF03179_consen   21 EEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGEAEQEAEELE   72 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            3566677777777777777777777777777777766666655554444443

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	142
2k88_A	60	Vacuolar proton pump subunit G; G subunit, V1VO AT	1e-08
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	6e-04

>2k88_A Vacuolar proton pump subunit G; G subunit, V1VO ATPase, VMA10P, hydrogen ION transport, hydrolase, ION transport, transport; NMR {Saccharomyces cerevisiae} Length = 60

 Score = 47.3 bits (112), Expect = 1e-08
 Identities = 26/59 (44%), Positives = 41/59 (69%)

Query: 1  MASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYE 59
          M SQ  GI  LL AEK A E V++A+K +  +LKQAK +A ++I+ Y+ +++K  +E+E
Sbjct: 1  MVSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFE 59

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 37.1 bits (85), Expect = 6e-04
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 15  EKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF---REYEAKFMGSRDD 68
            KR  E  A +K  +    ++AK++ +E  ++  ++ EK     R  +  F    D 
Sbjct: 95  RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
4efa_G	119	V-type proton ATPase subunit G; heterotrimer, peri	100.0
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	96.24
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	95.84
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	94.95
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	93.31
3v6i_B	105	V-type ATP synthase, subunit (VAPC-therm); periphe	92.49
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	91.57
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	88.94

>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A

Probab=100.00  E-value=3.3e-45  Score=272.82  Aligned_cols=113  Identities=34%  Similarity=0.535  Sum_probs=94.2

Q ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHH
Q psy2196           2 ASQTQGIQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKI   81 (142)
Q Consensus         2 asqs~GIQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI   81 (142)
                      -|||+|||+||+||++|++||++||++|++||||||+||++||+.||.++|++|+.|++.++|+++++..+++.+|+.+|
T Consensus         6 mSqs~GIQqLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eFk~~e~~~~g~~~~~~~~~e~eT~~ki   85 (119)
T 4efa_G            6 MSQKNGIATLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKELKEFEQKNAGGVGELEKKAEAGVQGEL   85 (119)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CTTSSSHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHHhhcccccccchhh
Q psy2196          82 DEMNKAVENNKENVIRKVLDLVYDIKPELHKNF  114 (142)
Q Consensus        82 ~~i~~~~~~nk~~Vv~~Ll~~V~dVkpevh~N~  114 (142)
                      +.|+++|++|++.||++||++||||+|+||+|.
T Consensus        86 ~~i~~~~~~~k~~Vv~~Ll~~V~dvkpeiH~Na  118 (119)
T 4efa_G           86 AEIKKIAEKKKDDVVKILIETVIKPSAEVHINA  118 (119)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHSCC--------
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHcCCCCCCCCCC
Confidence            999999999999999999999999999999995

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=96.24  E-value=0.047  Score=41.43  Aligned_cols=90  Identities=14%  Similarity=0.203  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------hcCChhHHHHHHHHHHHHH
Q psy2196          13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAK------------FMGSRDDVAAKIESDTKLK   80 (142)
Q Consensus        13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~------------~~Gs~~~~~~~le~eT~~k   80 (142)
                      +|+.+|..|+++|+..-..-+.+|+.+|+...+.....-|.+.+.....            .+.-......++-.++...
T Consensus        10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~~   89 (187)
T 3v6i_A           10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVREA   89 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999999999999888877776666544322            2334455556666666666


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHhh
Q psy2196          81 IDEMNKAVENNKENVIRKVLDLV  103 (142)
Q Consensus        81 I~~i~~~~~~nk~~Vv~~Ll~~V  103 (142)
                      |..+-.+ ..+.+-+.++++..+
T Consensus        90 L~~~~~~-~~Y~~~L~~Li~ea~  111 (187)
T 3v6i_A           90 LEALPQK-PEWPEVVRKLALEAL  111 (187)
T ss_dssp             HHHGGGS-TTHHHHHHHHHHHHH
T ss_pred             HHhhhCC-ccHHHHHHHHHHHHH
Confidence            6665544 224444444444444

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=95.84  E-value=0.018  Score=37.52  Aligned_cols=35  Identities=34%  Similarity=0.454  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           8 IQQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQE   42 (142)
Q Consensus         8 IQqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~   42 (142)
                      |..+-.||.+|.+||.+|.+.+..++..|+.+|..
T Consensus        18 L~eIKeAE~~A~~iVeeA~~ea~~ii~eAreeAke   52 (56)
T 2k6i_A           18 IKEVKLAEEQAVKEIEEAKNRAEQIKAEAIEEAKK   52 (56)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455799999999999999999999999999974

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=94.95  E-value=0.34  Score=30.44  Aligned_cols=47  Identities=28%  Similarity=0.343  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196           9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIF   55 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eF   55 (142)
                      +.|-.|..+|..||..|+....+...++..+|..|.+....+--.+.
T Consensus         2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~ei   48 (61)
T 1l2p_A            2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEI   48 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46889999999999999999888888777777777776655444433

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=93.31  E-value=1.5  Score=34.17  Aligned_cols=94  Identities=15%  Similarity=0.149  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH--------HhcCChhHHHHHHHHHHHH
Q psy2196          12 LAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREY----EA--------KFMGSRDDVAAKIESDTKL   79 (142)
Q Consensus        12 L~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~----ea--------~~~Gs~~~~~~~le~eT~~   79 (142)
                      -+|+..|.+|..+|...-..-..++..++...|..+...++++....    .+        ..+....+...++-.++..
T Consensus        26 qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e~i~~v~~~a~~  105 (233)
T 4efa_E           26 KEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEETKE  105 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            48999999999999887555555555555555555554444443321    11        1234455666667777777


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHhhcc
Q psy2196          80 KIDEMNKAVENNKENVIRKVLDLVYD  105 (142)
Q Consensus        80 kI~~i~~~~~~nk~~Vv~~Ll~~V~d  105 (142)
                      +|..+..+-....+-+..+++..++.
T Consensus       106 ~L~~~~~d~~~Y~~lL~~Li~eal~~  131 (233)
T 4efa_E          106 KLSGIANNRDEYKPILQSLIVEALLK  131 (233)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHHh
Confidence            77777554444555444555554444

>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I

Probab=92.49  E-value=2.2  Score=30.74  Aligned_cols=85  Identities=20%  Similarity=0.256  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHH
Q psy2196           9 QQLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFREYEAKFMGSRDDVAAKIESDTKLKIDEMNKAV   88 (142)
Q Consensus         9 QqLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk~~ea~~~Gs~~~~~~~le~eT~~kI~~i~~~~   88 (142)
                      ++|=.|-++|..+|..|...=..-|.+|...|...-.+|+..-+.+-.           .+..+........-+.++...
T Consensus        20 ~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~-----------ri~~eara~Aeaea~~v~~~A   88 (105)
T 3v6i_B           20 ERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETE-----------ALLARYRERAEAEAKAVREKA   88 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555555444444555555555555555555444433           344555666777788888999


Q ss_pred             HhhHHHHHHHHHHhhc
Q psy2196          89 ENNKENVIRKVLDLVY  104 (142)
Q Consensus        89 ~~nk~~Vv~~Ll~~V~  104 (142)
                      ..+-+..|..+|..|+
T Consensus        89 ~~r~~~Av~~vLkeVL  104 (105)
T 3v6i_B           89 MARLDEAVALVLKEVL  104 (105)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             HHhHHHHHHHHHHhhC
Confidence            9999999999999886

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=91.57  E-value=0.42  Score=29.94  Aligned_cols=31  Identities=39%  Similarity=0.499  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQED   43 (142)
Q Consensus        13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~E   43 (142)
                      +|..+|..|+++|+..-..-+.+|+.+|+.+
T Consensus        18 eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~~   48 (52)
T 2kk7_A           18 DAKAEANKIISEAEAEKAKILEKAKEEAEKR   48 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5888899999999998888888888888764

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=88.94  E-value=0.46  Score=35.02  Aligned_cols=44  Identities=16%  Similarity=0.197  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          13 AAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQEREKIFR   56 (142)
Q Consensus        13 ~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE~eFk   56 (142)
                      +|+.+|..|+++|+.....-+.+|+.+|..+.+.+..+-+.+-.
T Consensus        14 ~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~   57 (198)
T 2dm9_A           14 EAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAE   57 (198)
T ss_dssp             --------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999988887776666555444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	95.45

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.054  Score=33.92  Aligned_cols=43  Identities=30%  Similarity=0.383  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2196          10 QLLAAEKRAAEKVAEAKKRKARRLKQAKEEAQEDIEKYRQERE   52 (142)
Q Consensus        10 qLL~AEkeA~~iV~eARk~K~krLKqAK~EA~~EIe~yr~~kE   52 (142)
                      +|-+|-.+|+.||.+|+++..+-+-+||..|..|-+.....-.
T Consensus         3 ~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~   45 (61)
T d1l2pa_           3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQ   45 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999988776655433