Psyllid ID: psy2209

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MFERIKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS
Secondary Structure (PSIPRED)
ccccccccccccccccccccHHHHHccccccccccccccccccccccccccEEEEcccccccEEEEEEEccccccEEEEEEEEccEEEEEcccccccccEEEEEcccEEEEccccccccEEEEEEEccccEEEEEcccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccEEEEccccccccccccccccccccccccccccccccccccccccHHHHEccccccccccEEEEEcccccccEEEEEEEcEEEEEEccccccHHHHcccccEEEEcccccccccccEEEEEEccEEEEEEEcccHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MFERIKAVAnvednhqvtNMMDIIRSNFKemgtagrrkpskkyrkYVPQRLIEvtandsgsqhsgwlhkksgrnwKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLkhqgqdplvfgadnEQSYERWMKAMREATTLS
Flexible Loop (DISEMBL)
mferikavanvednhqvtnmMDIIRSNFkemgtagrrkpskkyrkyVPQRLIEvtandsgsqhsgwlhkksgrnwkRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS
Low Complexity Region (SEG)
MFERIKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS
Disordered region (IsUnstruct)
**********************I**********************YVPQRLIEV**********GWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA********************
Disordered Region (DISOPRED)
*************************************************************QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL**QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL*
Disordered Region (DISEMBL)
MFERIKAVANVEDNHQVTNMMDIIRSNFKEM************RKYVPQRLIEVTA**********LHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS
Disordered Region (DISPRO)
****IKA*A***************************************************SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFERIKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q69ZL1	1399	FYVE, RhoGEF and PH domai	yes	N/A	0.75	0.083	0.420	3e-21
Q6ZV73	1430	FYVE, RhoGEF and PH domai	yes	N/A	0.75	0.081	0.394	8e-20
Q6ZNL6	1462	FYVE, RhoGEF and PH domai	no	N/A	0.730	0.077	0.398	4e-17
Q80UZ0	1219	FYVE, RhoGEF and PH domai	no	N/A	0.730	0.093	0.423	8e-17
B6RSP1	1197	Pleckstrin homology domai	no	N/A	0.583	0.076	0.375	3e-11
Q7TQG1	1173	Pleckstrin homology domai	no	N/A	0.570	0.075	0.340	2e-10
Q9Y2H5	1048	Pleckstrin homology domai	no	N/A	0.589	0.087	0.329	3e-10
Q9Y4F1	1045	FERM, RhoGEF and pleckstr	no	N/A	0.538	0.080	0.356	1e-09
Q969H4	720	Connector enhancer of kin	no	N/A	0.538	0.116	0.373	1e-09
Q5RAB8	1045	FERM, RhoGEF and pleckstr	no	N/A	0.538	0.080	0.356	2e-09

>sp|Q69ZL1|FGD6_MOUSE FYVE, RhoGEF and PH domain-containing protein 6 OS=Mus musculus GN=Fgd6 PE=1 SV=2

 Score =  100 bits (250), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 2/119 (1%)

Query: 39   PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI 96
            PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V+Y Y ASED+
Sbjct: 1281 PSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDV 1340

Query: 97   KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
             AL S P+LG+ +  + ++++   VFQL H+G    VF AD+  S +RW+ A +E T L
Sbjct: 1341 AALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVL 1399

May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape.
Mus musculus (taxid: 10090)

>sp|Q6ZV73|FGD6_HUMAN FYVE, RhoGEF and PH domain-containing protein 6 OS=Homo sapiens GN=FGD6 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 77/119 (64%), Gaps = 2/119 (1%)

Query: 39   PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI 96
            PS + +K +P  L EV+AN   S  SG+L++  G  + WK +WFV+K++V+Y Y ASED+
Sbjct: 1312 PSGRKQKKIPAALKEVSANTEDSSMSGYLYRSKGNKKPWKHFWFVIKNKVLYTYAASEDV 1371

Query: 97   KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
             AL S P+LG+ +  + ++++   VFQL H+     VF A++  S ++W++A +E T L
Sbjct: 1372 AALESQPLLGFTVIQVKDENSESKVFQLLHKNMLFYVFKAEDAHSAQKWIEAFQEGTIL 1430

May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape.

Homo sapiens (taxid: 9606)

>sp|Q6ZNL6|FGD5_HUMAN FYVE, RhoGEF and PH domain-containing protein 5 OS=Homo sapiens GN=FGD5 PE=1 SV=3

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/118 (39%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 42   KYRKYVPQRLIEVTANDSGSQHSGWLH--KKSGRNWKRYWFVLKDQVMYKYKASEDIKAL 99
            K +K VP  L EV A+  GS  SG+L   K+  R+WK+ WFV+K +V+Y Y ASED  AL
Sbjct: 1345 KKQKKVPSALTEVAASGEGSAISGYLSRCKRGKRHWKKLWFVIKGKVLYTYMASEDKVAL 1404

Query: 100  LSIPVLGYELEALNEQDNFKY--VFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
             S+P+LG+ +    E+ + +   +F L H+      F A++  S +RW++AM +A+ L
Sbjct: 1405 ESMPLLGFTIAPEKEEGSSEVGPIFHLYHKKTLFYSFKAEDTNSAQRWIEAMEDASVL 1462

May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape.

Homo sapiens (taxid: 9606)

>sp|Q80UZ0|FGD5_MOUSE FYVE, RhoGEF and PH domain-containing protein 5 OS=Mus musculus GN=Fgd5 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 4/118 (3%)

Query: 42   KYRKYVPQRLIEVTANDSGSQHSGWLHK-KSG-RNWKRYWFVLKDQVMYKYKASEDIKAL 99
            K +K VP  L EV A+  GS  SG+L + KSG R WK+ W V+K +V+Y Y ASED  A+
Sbjct: 1102 KKQKKVPSALSEVAASGEGSAISGYLSRCKSGKRRWKKLWLVIKGKVLYTYLASEDKVAM 1161

Query: 100  LSIPVLGYELEALNEQDNFKY--VFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
             SIP+LG+ +    E+ + +   VF L H+      F A++  S +RWM+AM +A+ L
Sbjct: 1162 ESIPLLGFTIAPEKEEGSSEVGPVFHLYHKKTLFYSFKAEDSNSAQRWMEAMEDASVL 1219

May activate CDC42, a member of the Ras-like family of Rho- and Rac proteins, by exchanging bound GDP for free GTP. May play a role in regulating the actin cytoskeleton and cell shape.

Mus musculus (taxid: 10090)

>sp|B6RSP1|PKHA7_DANRE Pleckstrin homology domain-containing family A member 7 OS=Danio rerio GN=plekha7 PE=2 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 5/96 (5%)

Query: 65  GWLHKK--SG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF--K 119
           GWL+K+  SG R WKR WFVL D  ++ YK S +   L SIP+  Y +  +  +D+   K
Sbjct: 163 GWLYKQDSSGMRLWKRKWFVLADFCLFYYKDSREESVLGSIPLPSYTIAPVGPEDHISRK 222

Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
           Y F+ +H G     F AD ++    W++AM +A  +
Sbjct: 223 YAFKAEHTGMRTYYFSADTQEDMNGWVRAMNQAALM 258

Required for zonula adherens biogenesis and maintenance.

Danio rerio (taxid: 7955)

>sp|Q7TQG1|PKHA6_MOUSE Pleckstrin homology domain-containing family A member 6 OS=Mus musculus GN=Plekha6 PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 54/94 (57%), Gaps = 5/94 (5%)

Query: 64  SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-- 118
           +GWL+K++    + W + WFVL D+ ++ YK  +    L SIP+L + + A+   DN   
Sbjct: 63  AGWLYKQASSGVKQWNKRWFVLVDRCLFYYKDEKQESILGSIPLLSFRVAAVQPSDNISR 122

Query: 119 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           K+ F+ +H G     F A++ +  E W++AM EA
Sbjct: 123 KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 156

Mus musculus (taxid: 10090)

>sp|Q9Y2H5|PKHA6_HUMAN Pleckstrin homology domain-containing family A member 6 OS=Homo sapiens GN=PLEKHA6 PE=1 SV=4

 Score = 64.7 bits (156), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)

Query: 64  SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-- 118
           +GWL K++    + W + WFVL D+ ++ YK  ++   L SIP+L + + A+   DN   
Sbjct: 63  AGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISR 122

Query: 119 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
           K+ F+ +H G     F A++ +  E W++AM EA  +
Sbjct: 123 KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 159

Homo sapiens (taxid: 9606)

>sp|Q9Y4F1|FARP1_HUMAN FERM, RhoGEF and pleckstrin domain-containing protein 1 OS=Homo sapiens GN=FARP1 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 3/87 (3%)

Query: 70   KSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK--YVFQLKHQ 127
            K+   W++ W V  +  ++ YK+ +D   L S+P+LGY L   +E +N +  YVF+L H 
Sbjct: 944  KNSNGWQKLWVVFTNFCLFFYKSHQDNHPLASLPLLGYSLTIPSESENIQKDYVFKL-HF 1002

Query: 128  GQDPLVFGADNEQSYERWMKAMREATT 154
                  F A++E ++ERWM+ +R AT+
Sbjct: 1003 KSHVYYFRAESEYTFERWMEVIRSATS 1029

May function as Rho-guanine nucleotide exchange factor.

Homo sapiens (taxid: 9606)

>sp|Q969H4|CNKR1_HUMAN Connector enhancer of kinase suppressor of ras 1 OS=Homo sapiens GN=CNKSR1 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 7/91 (7%)

Query: 65  GWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
           GWL  +       G  W+R WFVLK   +Y Y+  +D KA   I V  Y LE+ ++Q   
Sbjct: 408 GWLLLRKAPGGFMGPRWRRRWFVLKGHTLYWYRQPQDEKAEGLINVSNYSLESGHDQKK- 466

Query: 119 KYVFQLKHQGQDPLVFGADNEQSYERWMKAM 149
           KYVFQL H    P +F AD       W++ +
Sbjct: 467 KYVFQLTHDVYKPFIFAADTLTDLSMWVRHL 497

May function as an adapter protein or regulator of Ras signaling pathways.

Homo sapiens (taxid: 9606)

>sp|Q5RAB8|FARP1_PONAB FERM, RhoGEF and pleckstrin domain-containing protein 1 OS=Pongo abelii GN=FARP1 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 70   KSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF--KYVFQLKHQ 127
            K+   W++ W V  +  ++ YK+ +D   L S+P+LGY L    E +N    YVF+L H 
Sbjct: 944  KNSNGWQKLWVVFTNFCLFFYKSHQDNHPLASLPLLGYSLTIPTESENIHKDYVFKL-HF 1002

Query: 128  GQDPLVFGADNEQSYERWMKAMREATT 154
                  F A++E ++ERWM+ +R AT+
Sbjct: 1003 KSHVYYFRAESEYTFERWMEVIRSATS 1029

May function as Rho-guanine nucleotide exchange factor.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
328700485	862	PREDICTED: FYVE, RhoGEF and PH domain-co	0.871	0.157	0.513	5e-35
321456107	1317	hypothetical protein DAPPUDRAFT_331275 [	0.762	0.090	0.479	4e-25
242010240	1001	FYVE, RhoGEF and PH domain-containing pr	0.756	0.117	0.480	6e-25
427780127	1097	hypothetical protein [Rhipicephalus pulc	0.679	0.096	0.504	1e-22
427780589	1700	hypothetical protein [Rhipicephalus pulc	0.679	0.062	0.504	8e-22
427780591	1673	hypothetical protein [Rhipicephalus pulc	0.679	0.063	0.504	1e-21
26382536	465	unnamed protein product [Mus musculus]	0.75	0.251	0.420	1e-19
117616870	431	ethanol decreased 4 [synthetic construct	0.75	0.271	0.420	1e-19
50510899	1407	mKIAA1362 protein [Mus musculus]	0.75	0.083	0.420	1e-19
187952119	1398	Fgd6 protein [Mus musculus] gi|187953085	0.75	0.083	0.420	2e-19

>gi|328700485|ref|XP_001945183.2| PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6-like [Acyrthosiphon pisum]

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 75/146 (51%), Positives = 102/146 (69%), Gaps = 10/146 (6%)

Query: 16  QVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGR-N 74
           ++  M+D ++++FK+ G       SKK  KYVPQRL EV ANDSGSQ SGWL+++  R +
Sbjct: 720 EILKMVDTVKNSFKKSGVWS----SKKLVKYVPQRLKEVMANDSGSQMSGWLYRREKRKS 775

Query: 75  WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK-----YVFQLKHQGQ 129
           WKR+WFVLK+QV+Y YKASED+ AL +IPVLGY ++   E  N++      VFQL H GQ
Sbjct: 776 WKRFWFVLKEQVLYMYKASEDVVALNTIPVLGYSVQTFPEGTNYEEFDSSCVFQLAHAGQ 835

Query: 130 DPLVFGADNEQSYERWMKAMREATTL 155
           +PL+F +D EQ  +RW+  + EAT L
Sbjct: 836 NPLIFCSDTEQLAKRWINTLNEATKL 861

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321456107|gb|EFX67223.1| hypothetical protein DAPPUDRAFT_331275 [Daphnia pulex]

 Score =  119 bits (298), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/121 (47%), Positives = 85/121 (70%), Gaps = 2/121 (1%)

Query: 37   RKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDI 96
            R+  +K R+Y+P RL+EV AND+ SQ SG+L ++  R+WK+ WFVLKD+V+Y YKA ED+
Sbjct: 1197 RRDFRKERRYIPPRLMEVPANDAESQISGYLSRRIRRSWKKNWFVLKDKVLYIYKAPEDV 1256

Query: 97   KALLSIPVLGYELEALNE--QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
             AL +IPVLGYE++   E  ++  +  FQL H  Q P+VF A+N    ++W++A+  AT 
Sbjct: 1257 VALDTIPVLGYEVQTFQEVVEEIEQNEFQLFHPKQSPIVFQAENAVLTKKWIEALSSATI 1316

Query: 155  L 155
            L
Sbjct: 1317 L 1317

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010240|ref|XP_002425878.1| FYVE, RhoGEF and PH domain-containing protein, putative [Pediculus humanus corporis] gi|212509844|gb|EEB13140.1| FYVE, RhoGEF and PH domain-containing protein, putative [Pediculus humanus corporis]

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 87/127 (68%), Gaps = 9/127 (7%)

Query: 24  IRSNFKEMGTAGR-RKPSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRNWKRYWFVL 82
           I+S F +  +AG  +KP     KY+P RL EV+ANDS S  SGWL++KS ++WK +W+VL
Sbjct: 878 IKSKFVKYSSAGNGKKP-----KYIPPRLKEVSANDSESSMSGWLYRKSRKSWKMFWYVL 932

Query: 83  KDQVMYKYKASEDIKALLSIPVLGYELEALN---EQDNFKYVFQLKHQGQDPLVFGADNE 139
           KD V+Y YKASED+ AL +IPVLGYE+E      E+ +   +F L H  Q PL+F A+++
Sbjct: 933 KDHVLYVYKASEDVLALETIPVLGYEVERAKVNFEEIDKNLIFSLVHSSQMPLIFRAESQ 992

Query: 140 QSYERWM 146
            S +R++
Sbjct: 993 TSADRYL 999

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427780127|gb|JAA55515.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  111 bits (277), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 74/109 (67%), Gaps = 3/109 (2%)

Query: 51   LIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELE 110
            L EV AND GS  SG+LH  S + WKR WFV+K+ V+Y YKASED+ AL ++P+LGY++ 
Sbjct: 989  LQEVAANDLGSSMSGYLHHWSKKAWKRQWFVIKEHVLYVYKASEDVAALRTVPLLGYQVG 1048

Query: 111  ALN---EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
            A++   E+   + +F L+H G DPL+F AD      RW +AM EAT LS
Sbjct: 1049 AVSKGFEEVPREQLFHLEHTGLDPLIFYADTSDLATRWREAMEEATKLS 1097

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427780589|gb|JAA55746.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 74/109 (67%), Gaps = 3/109 (2%)

Query: 51   LIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELE 110
            L EV AND GS  SG+LH  S + WKR WFV+K+ V+Y YKASED+ AL ++P+LGY++ 
Sbjct: 1592 LQEVAANDLGSSMSGYLHHWSKKAWKRQWFVIKEHVLYVYKASEDVAALRTVPLLGYQVG 1651

Query: 111  ALN---EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
            A++   E+   + +F L+H G DPL+F AD      RW +AM EAT LS
Sbjct: 1652 AVSKGFEEVPREQLFHLEHTGLDPLIFYADTSDLATRWREAMEEATKLS 1700

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427780591|gb|JAA55747.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/109 (50%), Positives = 74/109 (67%), Gaps = 3/109 (2%)

Query: 51   LIEVTANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELE 110
            L EV AND GS  SG+LH  S + WKR WFV+K+ V+Y YKASED+ AL ++P+LGY++ 
Sbjct: 1565 LQEVAANDLGSSMSGYLHHWSKKAWKRQWFVIKEHVLYVYKASEDVAALRTVPLLGYQVG 1624

Query: 111  ALN---EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
            A++   E+   + +F L+H G DPL+F AD      RW +AM EAT LS
Sbjct: 1625 AVSKGFEEVPREQLFHLEHTGLDPLIFYADTSDLATRWREAMEEATKLS 1673

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|26382536|dbj|BAB30510.2| unnamed protein product [Mus musculus]

 Score =  101 bits (252), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 2/119 (1%)

Query: 39  PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI 96
           PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V+Y Y ASED+
Sbjct: 347 PSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDV 406

Query: 97  KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
            AL S P+LG+ +  + ++++   VFQL H+G    VF AD+  S +RW+ A +E T L
Sbjct: 407 AALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVL 465

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|117616870|gb|ABK42453.1| ethanol decreased 4 [synthetic construct]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 2/119 (1%)

Query: 39  PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI 96
           PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V+Y Y ASED+
Sbjct: 313 PSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDV 372

Query: 97  KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
            AL S P+LG+ +  + ++++   VFQL H+G    VF AD+  S +RW+ A +E T L
Sbjct: 373 AALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVL 431

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|50510899|dbj|BAD32435.1| mKIAA1362 protein [Mus musculus]

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 2/119 (1%)

Query: 39   PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI 96
            PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V+Y Y ASED+
Sbjct: 1289 PSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDV 1348

Query: 97   KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
             AL S P+LG+ +  + ++++   VFQL H+G    VF AD+  S +RW+ A +E T L
Sbjct: 1349 AALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVL 1407

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|187952119|gb|AAI39023.1| Fgd6 protein [Mus musculus] gi|187953085|gb|AAI39020.1| Fgd6 protein [Mus musculus]

 Score =  100 bits (250), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 50/119 (42%), Positives = 76/119 (63%), Gaps = 2/119 (1%)

Query: 39   PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI 96
            PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V+Y Y ASED+
Sbjct: 1280 PSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDV 1339

Query: 97   KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
             AL S P+LG+ +  + ++++   VFQL H+G    VF AD+  S +RW+ A +E T L
Sbjct: 1340 AALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVL 1398

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
MGI|MGI:1261419	1399	Fgd6 "FYVE, RhoGEF and PH doma	0.75	0.083	0.420	1.2e-19
RGD|1565609	1390	Fgd6 "FYVE, RhoGEF and PH doma	0.75	0.084	0.420	5.3e-19
UNIPROTKB|D4A3Y7	1406	Fgd6 "Protein Fgd6" [Rattus no	0.75	0.083	0.420	5.4e-19
UNIPROTKB|J9NYT0	1422	FGD6 "Uncharacterized protein"	0.75	0.082	0.403	9e-19
UNIPROTKB|F1Q280	1423	FGD6 "Uncharacterized protein"	0.75	0.082	0.403	9e-19
UNIPROTKB|F1NVP2	1430	FGD6 "Uncharacterized protein"	0.75	0.081	0.394	9e-19
UNIPROTKB|F1MQ30	1434	FGD6 "Uncharacterized protein"	0.75	0.081	0.403	9.1e-19
UNIPROTKB|Q6ZV73	1430	FGD6 "FYVE, RhoGEF and PH doma	0.75	0.081	0.394	1.5e-18
UNIPROTKB|F1SQP8	1431	FGD6 "Uncharacterized protein"	0.75	0.081	0.403	1.5e-18
ZFIN|ZDB-GENE-041210-200	1315	fgd6 "FYVE, RhoGEF and PH doma	0.737	0.087	0.406	1.1e-16

MGI|MGI:1261419 Fgd6 "FYVE, RhoGEF and PH domain containing 6" [Mus musculus (taxid:10090)]

 Score = 248 (92.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 50/119 (42%), Positives = 76/119 (63%)

Query:    39 PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI 96
             PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V+Y Y ASED+
Sbjct:  1281 PSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDV 1340

Query:    97 KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
              AL S P+LG+ +  + ++++   VFQL H+G    VF AD+  S +RW+ A +E T L
Sbjct:  1341 AALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTVL 1399

GO:0003674 "molecular_function" evidence=ND

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1565609 Fgd6 "FYVE, RhoGEF and PH domain containing 6" [Rattus norvegicus (taxid:10116)]

 Score = 242 (90.2 bits), Expect = 5.3e-19, P = 5.3e-19
 Identities = 50/119 (42%), Positives = 75/119 (63%)

Query:    39 PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI 96
             PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V+Y Y ASED+
Sbjct:  1272 PSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDV 1331

Query:    97 KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
              AL S P+LG+ +  + ++ +   VFQL H+G    VF AD+  S +RW+ A +E T L
Sbjct:  1332 AALESQPLLGFTVAQVKDEHSDPRVFQLLHKGLLFYVFKADDAHSTQRWIDAFQEGTVL 1390

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|D4A3Y7 Fgd6 "Protein Fgd6" [Rattus norvegicus (taxid:10116)]

 Score = 242 (90.2 bits), Expect = 5.4e-19, P = 5.4e-19
 Identities = 50/119 (42%), Positives = 75/119 (63%)

Query:    39 PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI 96
             PS + +K +P  L EV+AN   S  SG+L++  G  + WK  WFV+K++V+Y Y ASED+
Sbjct:  1288 PSGRKQKKIPAALKEVSANTEDSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDV 1347

Query:    97 KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
              AL S P+LG+ +  + ++ +   VFQL H+G    VF AD+  S +RW+ A +E T L
Sbjct:  1348 AALESQPLLGFTVAQVKDEHSDPRVFQLLHKGLLFYVFKADDAHSTQRWIDAFQEGTVL 1406

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|J9NYT0 FGD6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 9.0e-19, P = 9.0e-19
 Identities = 48/119 (40%), Positives = 75/119 (63%)

Query:    39 PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDI 96
             PS + +K +P  L EV+AN   S  SG+L++  G    WK  WFV+K++V+Y Y ASED+
Sbjct:  1304 PSGRKQKKIPAALKEVSANTEDSSMSGYLYRSKGNKKPWKHLWFVIKNKVLYTYAASEDV 1363

Query:    97 KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
              AL S P+LG+ +  + ++++   VFQL H+     VF AD+  S ++W++A +E T L
Sbjct:  1364 AALESQPLLGFTVTQVKDENSESRVFQLLHKNMLFYVFKADDAHSAQKWIEAFQEGTIL 1422

GO:0046872 "metal ion binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1Q280 FGD6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 240 (89.5 bits), Expect = 9.0e-19, P = 9.0e-19
 Identities = 48/119 (40%), Positives = 75/119 (63%)

Query:    39 PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDI 96
             PS + +K +P  L EV+AN   S  SG+L++  G    WK  WFV+K++V+Y Y ASED+
Sbjct:  1305 PSGRKQKKIPAALKEVSANTEDSSMSGYLYRSKGNKKPWKHLWFVIKNKVLYTYAASEDV 1364

Query:    97 KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
              AL S P+LG+ +  + ++++   VFQL H+     VF AD+  S ++W++A +E T L
Sbjct:  1365 AALESQPLLGFTVTQVKDENSESRVFQLLHKNMLFYVFKADDAHSAQKWIEAFQEGTIL 1423

GO:0046872 "metal ion binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|F1NVP2 FGD6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 240 (89.5 bits), Expect = 9.0e-19, P = 9.0e-19
 Identities = 47/119 (39%), Positives = 75/119 (63%)

Query:    39 PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI 96
             PS + +K +P  L EV+AN   S  SG+LH+  G  + WK  WFV+K++V+Y Y ASED+
Sbjct:  1312 PSGRKQKKIPAALKEVSANTEDSTMSGYLHRSKGSKKPWKHLWFVIKNKVLYTYAASEDV 1371

Query:    97 KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
              AL S P+LG+ +  + ++++   VF L H+     +F AD+  S ++W++A +E T L
Sbjct:  1372 AALESQPLLGFTVSEVRDENSESRVFHLLHKNTLFYIFKADDPHSAQKWIEAFQEGTVL 1430

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1MQ30 FGD6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 240 (89.5 bits), Expect = 9.1e-19, P = 9.1e-19
 Identities = 48/119 (40%), Positives = 75/119 (63%)

Query:    39 PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDI 96
             PS + +K +P  L EV+AN   S  SG+L++  G    WK  WFV+K++V+Y Y ASED+
Sbjct:  1316 PSGRKQKKIPAALKEVSANTEDSSMSGYLYRSKGNKKPWKHLWFVIKNKVLYTYAASEDV 1375

Query:    97 KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
              AL S P+LG+ +  + ++++   VFQL H+     VF AD+  S ++W++A +E T L
Sbjct:  1376 AALESQPLLGFTVTQVKDENSESRVFQLLHKNMLFYVFKADDAHSAQKWIEAFQEGTIL 1434

GO:0046872 "metal ion binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|Q6ZV73 FGD6 "FYVE, RhoGEF and PH domain-containing protein 6" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 47/119 (39%), Positives = 76/119 (63%)

Query:    39 PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDI 96
             PS + +K +P  L EV+AN   S  SG+L++  G    WK +WFV+K++V+Y Y ASED+
Sbjct:  1312 PSGRKQKKIPAALKEVSANTEDSSMSGYLYRSKGNKKPWKHFWFVIKNKVLYTYAASEDV 1371

Query:    97 KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
              AL S P+LG+ +  + ++++   VFQL H+     VF A++  S ++W++A +E T L
Sbjct:  1372 AALESQPLLGFTVIQVKDENSESKVFQLLHKNMLFYVFKAEDAHSAQKWIEAFQEGTIL 1430

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0001726 "ruffle" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=ISS

GO:0030027 "lamellipodium" evidence=ISS

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=ISS

GO:0030036 "actin cytoskeleton organization" evidence=ISS

GO:0031267 "small GTPase binding" evidence=ISS

GO:0043088 "regulation of Cdc42 GTPase activity" evidence=ISS

GO:0046847 "filopodium assembly" evidence=ISS

GO:0007010 "cytoskeleton organization" evidence=ISS

UNIPROTKB|F1SQP8 FGD6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 238 (88.8 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 48/119 (40%), Positives = 74/119 (62%)

Query:    39 PSKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDI 96
             PS + +K +P  L EV+AN   S  SG+L++  G    WK  WFV+K++V+Y Y ASED+
Sbjct:  1313 PSGRKQKKIPAALKEVSANTEDSSMSGYLYRSKGNKKPWKHLWFVIKNKVLYTYAASEDV 1372

Query:    97 KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
              AL S P+LG+ +  + ++++   VFQL H+     VF AD+  S  +W++A +E T L
Sbjct:  1373 AALESQPLLGFTVTQVKDENSESRVFQLLHKNMLFYVFKADDAHSAHKWIEAFQEGTIL 1431

GO:0046872 "metal ion binding" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

ZFIN|ZDB-GENE-041210-200 fgd6 "FYVE, RhoGEF and PH domain containing 6" [Danio rerio (taxid:7955)]

 Score = 220 (82.5 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 48/118 (40%), Positives = 71/118 (60%)

Query:    40 SKKYRKYVPQRLIEVTANDSGSQHSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIK 97
             S+K +K +P  L EV+AN   S  SG+LH+  G    WKR WFV+K++V+Y Y ASED+ 
Sbjct:  1199 SRKQKK-IPSALKEVSANTENSSMSGYLHRSKGHKKPWKRLWFVIKNKVLYTYAASEDVA 1257

Query:    98 ALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
             AL S P+LG+ L         K  F+L H+     +F A++  + +RW++A +EA  L
Sbjct:  1258 ALESQPLLGFFLREEKTGPAQKLQFKLYHKNTLYYIFRAEDIPTAQRWIEAFQEAMIL 1315

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
cd13237	90	cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain	1e-29
cd13248	104	cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate	1e-26
pfam00169	101	pfam00169, PH, PH domain	6e-17
smart00233	102	smart00233, PH, Pleckstrin homology domain	4e-16
cd01260	114	cd01260, PH_CNK_mammalian-like, Connector enhancer	5e-16
cd13236	105	cd13236, PH2_FGD1-4, FYVE, RhoGEF and PH domain co	9e-16
cd13263	114	cd13263, PH_RhoGap25-like, Rho GTPase activating p	7e-14
cd13235	113	cd13235, PH2_FARP1-like, FERM, RhoGEF and pleckstr	4e-12
cd13316	95	cd13316, PH_Boi, Boi family Pleckstrin homology do	2e-11
cd00821	92	cd00821, PH, Pleckstrin homology (PH) domain	5e-11
cd13281	139	cd13281, PH_PLEKHD1, Pleckstrin homology (PH) doma	1e-09
cd13288	120	cd13288, PH_Ses, Sesquipedalian family Pleckstrin	8e-09
cd13326	90	cd13326, PH_CNK_insect-like, Connector enhancer of	1e-08
cd13276	117	cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin	6e-08
cd13299	102	cd13299, PH2_PH_fungal, Fungal proteins Pleckstrin	1e-07
cd13215	130	cd13215, PH-GRAM1_AGT26, Autophagy-related protein	2e-07
cd13296	111	cd13296, PH2_MyoX, Myosin X Pleckstrin homology (P	3e-07
cd13308	113	cd13308, PH_3BP2, SH3 domain-binding protein 2 Ple	9e-07
cd13379	114	cd13379, PH_RhoGap24, Rho GTPase activating protei	2e-06
cd13298	106	cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin	3e-06
cd01259	124	cd01259, PH_APBB1IP, Amyloid beta (A4) Precursor p	4e-06
cd01252	118	cd01252, PH_GRP1-like, General Receptor for Phosph	7e-06
cd13378	116	cd13378, PH_RhoGAP2, Rho GTPase activating protein	8e-06
cd01265	101	cd01265, PH_TBC1D2A, TBC1 domain family member 2A	1e-05
cd13306	107	cd13306, PH1_AFAP, Actin filament associated prote	3e-05
cd01253	113	cd01253, PH_ARHGAP21-like, ARHGAP21 and related pr	6e-05
cd13272	116	cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bis	1e-04
cd01238	140	cd01238, PH_Btk, Bruton's tyrosine kinase pleckstr	1e-04
cd01237	110	cd01237, PH_fermitin, Fermitin family pleckstrin h	2e-04
cd13282	96	cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology	2e-04
cd13260	103	cd13260, PH_RASA1, RAS p21 protein activator (GTPa	5e-04
cd01235	106	cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (als	0.001
cd13297	123	cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin h	0.001
cd13238	96	cd13238, PH2_FGD4_insect-like, FYVE, RhoGEF and PH	0.001
cd13255	110	cd13255, PH_TAAP2-like, Tandem PH-domain-containin	0.001
cd13301	108	cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin	0.001
cd13267	125	cd13267, PH_DOCK-D, Dedicator of cytokinesis-D sub	0.001
cd13271	114	cd13271, PH2_TAPP1_2, Tandem PH-domain-containing	0.002

>gnl|CDD|241391 cd13237, PH2_FGD5_FGD6, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins 5 and 6 pleckstrin homology (PH) domain, C-terminus

 Score =  103 bits (258), Expect = 1e-29
 Identities = 44/89 (49%), Positives = 62/89 (69%), Gaps = 4/89 (4%)

Query: 64  SGWLH--KKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF--K 119
           SG+L+  K+  ++WKR WFVLKD+V+Y YKASED+ AL SIP+LGY +    E       
Sbjct: 2   SGYLYRRKRKKKSWKRLWFVLKDKVLYTYKASEDVVALESIPLLGYTVVPAKEGFEGDES 61

Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKA 148
            VFQL H+GQ P +F AD+ ++ +RW++A
Sbjct: 62  LVFQLLHKGQLPYIFRADDAETAQRWIEA 90

FGD5 regulates promotes angiogenesis of vascular endothelial growth factor (VEGF) in vascular endothelial cells, including network formation, permeability, directional movement, and proliferation. The specific function of FGD6 is unknown. In general, FGDs have a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activate the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the PH domain is involved in intracellular targeting of the DH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241402 cd13248, PH_PEPP1_2_3, Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain

 Score = 96.2 bits (240), Expect = 1e-26
 Identities = 41/94 (43%), Positives = 56/94 (59%), Gaps = 5/94 (5%)

Query: 64  SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD--NF 118
           SGWLHK+ G   +NWK+ WFVLKD  +Y YK  E+ KAL SI +  Y +   +  D  N 
Sbjct: 10  SGWLHKQGGSGLKNWKKRWFVLKDNCLYYYKDPEEEKALGSILLPSYTISPASPSDEINR 69

Query: 119 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           K+ F+ +H G     F AD ++  E+WMKA+  A
Sbjct: 70  KFAFKAEHAGMRTYYFAADTQEEMEQWMKALSLA 103

PEPP1 (also called PLEKHA4/PH domain-containing family A member 4 and RHOXF1/Rhox homeobox family member 1), and related homologs PEPP2 (also called PLEKHA5/PH domain-containing family A member 5) and PEPP3 (also called PLEKHA6/PH domain-containing family A member 6), have PH domains that interact specifically with PtdIns(3,4)P3. Other proteins that bind PtdIns(3,4)P3 specifically are: TAPP1 (tandem PH-domain-containing protein-1) and TAPP2], PtdIns3P AtPH1, and Ptd- Ins(3,5)P2 (centaurin-beta2). All of these proteins contain at least 5 of the 6 conserved amino acids that make up the putative phosphatidylinositol 3,4,5- trisphosphate-binding motif (PPBM) located at their N-terminus. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 104

>gnl|CDD|215766 pfam00169, PH, PH domain

 Score = 71.0 bits (174), Expect = 6e-17
 Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 63  HSGWLHKKSG---RNWKRYWFVLKDQVM--YKYKASEDIKALLSIPVLGYELEALNEQDN 117
             GWL KK     ++WK+ +FVL D V+  YK       +   SIP+ G ++  + + ++
Sbjct: 3   KEGWLLKKGSGGRKSWKKRYFVLFDGVLLYYKDSKKSSSRPKGSIPLSGCQVTKVPDSED 62

Query: 118 FK--YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
            K    F+++   ++  +  A++E+  + W+KA+R A 
Sbjct: 63  GKRKNCFEIRTGDRETFLLQAESEEERKEWVKAIRSAI 100

PH stands for pleckstrin homology. Length = 101

>gnl|CDD|214574 smart00233, PH, Pleckstrin homology domain

 Score = 69.1 bits (169), Expect = 4e-16
 Identities = 29/99 (29%), Positives = 54/99 (54%), Gaps = 8/99 (8%)

Query: 63  HSGWLHKKSG---RNWKRYWFVLKDQVMYKYK---ASEDIKALLSIPVLGYELEALNEQD 116
             GWL+KKSG   ++WK+ +FVL +  +  YK     +  K   SI + G  +    + D
Sbjct: 3   KEGWLYKKSGGGKKSWKKRYFVLFNSTLLYYKSKKDKKSYKPKGSIDLSGCTVREAPDPD 62

Query: 117 NF--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
           +    + F++K   +  L+  A++E+  E+W++A+R+A 
Sbjct: 63  SSKKPHCFEIKTSDRKTLLLQAESEEEREKWVEALRKAI 101

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. Length = 102

>gnl|CDD|241291 cd01260, PH_CNK_mammalian-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 68.9 bits (169), Expect = 5e-16
 Identities = 32/97 (32%), Positives = 45/97 (46%), Gaps = 7/97 (7%)

Query: 65  GWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
           GWL KK       G+ WKRYWFVLK   +Y Y   +D KA   I +  +++E  +E    
Sbjct: 17  GWLWKKKEAKGFFGQKWKRYWFVLKGSSLYWYNNPQDEKAEGFINLPDFKIERASECKK- 75

Query: 119 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
           KY F+  H       F A+N     +W+  +  A   
Sbjct: 76  KYAFKASHPKIKTFYFAAENLDDMNKWLSKLITAINK 112

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and, with the exception of CNK3, a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from mammals, chickens, amphibians, fish, and crustacea. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241390 cd13236, PH2_FGD1-4, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia proteins pleckstrin homology (PH) domain, C-terminus

 Score = 68.1 bits (167), Expect = 9e-16
 Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 10/105 (9%)

Query: 57  NDSGSQHS---GWLH-KKSGRNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYEL 109
                ++S    +L   + G+ W++ W V+      V+Y Y A +D++A  +IP+ GYE+
Sbjct: 1   ASLVPENSLLCSFLQYSEKGKTWQKVWCVIPRTEPLVLYLYGAPQDVRAPRTIPLPGYEV 60

Query: 110 EALNEQDNF--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
                ++    K+VF+L  Q +    F A++E+  +RW++A+  A
Sbjct: 61  SVPPPEERLDGKHVFKL-SQSKQSHYFSAESEELQQRWLEALSRA 104

In general, FGDs have a RhoGEF (DH) domain, followed by an N-terminal PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activates the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the N-terminal PH domain is involved in intracellular targeting of the DH domain. Not much is known about FGD2. FGD1 is the best characterized member of the group with mutations here leading to the X-linked disorder known as faciogenital dysplasia (FGDY). Both FGD1 and FGD3 are targeted by the ubiquitin ligase SCF(FWD1/beta-TrCP) upon phosphorylation of two serine residues in its DSGIDS motif and subsequently degraded by the proteasome. However, FGD1 and FGD3 induced significantly different morphological changes in HeLa Tet-Off cells and while FGD1 induced long finger-like protrusions, FGD3 induced broad sheet-like protrusions when the level of GTP-bound Cdc42 was significantly increased by the inducible expression of FGD3. They also reciprocally regulated cell motility in inducibly expressed in HeLa Tet-Off cells, FGD1 stimulated cell migration while FGD3 inhibited it. FGD1 and FGD3 therefore play different roles to regulate cellular functions, even though their intracellular levels are tightly controlled by the same destruction pathway through SCF(FWD1/beta-TrCP). FGD4 is one of the genes associated with Charcot-Marie-Tooth neuropathy type 4 (CMT4), a group of progressive motor and sensory axonal and demyelinating neuropathies that are distinguished from other forms of CMT by autosomal recessive inheritance. Those affected have distal muscle weakness and atrophy associated with sensory loss and, frequently, pes cavus foot deformity. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 105

>gnl|CDD|241417 cd13263, PH_RhoGap25-like, Rho GTPase activating protein 25 and related proteins Pleckstrin homology (PH) domain

 Score = 63.5 bits (155), Expect = 7e-14
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 12/102 (11%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL--NEQDNF 118
            SGWL K+ G  +NW+R WFVL+   +Y YK  ++ K    IP+ G  ++ L  N ++  
Sbjct: 5   KSGWLKKQGGIVKNWQRRWFVLRGDQLYYYKDEDESKPQGCIPLPGNTVKELPFNPEEPG 64

Query: 119 KYVFQLK--------HQGQDPLVFGADNEQSYERWMKAMREA 152
           K++F++             D  +  A+++   E W+K +R  
Sbjct: 65  KFLFEIIPGDGGTRRSANHDSYLLMANSQAEMEEWVKVIRRV 106

RhoGAP25 (also called ArhGap25) like other RhoGaps are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. This hierarchy contains RhoGAP22, RhoGAP24, and RhoGAP25. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241389 cd13235, PH2_FARP1-like, FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins Pleckstrin Homology (PH) domain, repeat 2

 Score = 58.9 bits (143), Expect = 4e-12
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 5/97 (5%)

Query: 61  SQHSGWLHKK--SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
           +Q SG+L +K  +   W++ W V  +  ++ YK+ +D   L S+P+LGY +   +E DN 
Sbjct: 18  NQMSGYLLRKFKNSNGWQKLWVVFTNFCLFFYKSHQDEFPLASLPLLGYSVGLPSEADNI 77

Query: 119 K--YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
              YVF+L+        F A++E ++ERWM+ +R AT
Sbjct: 78  DKDYVFKLQF-KSHVYFFRAESEYTFERWMEVIRSAT 113

Members here include FARP1 (also called Chondrocyte-derived ezrin-like protein; PH domain-containing family C member 2), FARP2 (also called FIR/FERM domain including RhoGEF; FGD1-related Cdc42-GEF/FRG), and FARP6 (also called Zinc finger FYVE domain-containing protein 24). They are members of the Dbl family guanine nucleotide exchange factors (GEFs) which are upstream positive regulators of Rho GTPases. Little is known about FARP1 and FARP6, though FARP1 has increased expression in differentiated chondrocytes. FARP2 is thought to regulate neurite remodeling by mediating the signaling pathways from membrane proteins to Rac. It is found in brain, lung, and testis, as well as embryonic hippocampal and cortical neurons. FARP1 and FARP2 are composed of a N-terminal FERM domain, a proline-rich (PR) domain, Dbl-homology (DH), and two C-terminal PH domains. FARP6 is composed of Dbl-homology (DH), and two C-terminal PH domains separated by a FYVE domain. This hierarchy contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241470 cd13316, PH_Boi, Boi family Pleckstrin homology domain

 Score = 57.0 bits (138), Expect = 2e-11
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 4/95 (4%)

Query: 63  HSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-K 119
           HSGW+ K+  R   WK  +FVLK   +Y  K+  D K    I + G+ +   +      +
Sbjct: 1   HSGWMKKRGERYGTWKTRYFVLKGTRLYYLKSENDSKEKGLIDLTGHRVTVDDSNSKPGR 60

Query: 120 YVFQLKH-QGQDPLVFGADNEQSYERWMKAMREAT 153
           Y F+L     +    F  D ++    WMKA+ +AT
Sbjct: 61  YGFKLVPPAVEKVHYFAVDEKEVLREWMKALMKAT 95

Yeast Boi proteins Boi1 and Boi2 are functionally redundant and important for cell growth with Boi mutants displaying defects in bud formation and in the maintenance of cell polarity.They appear to be linked to Rho-type GTPase, Cdc42 and Rho3. Boi1 and Boi2 display two-hybrid interactions with the GTP-bound ("active") form of Cdc42, while Rho3 can suppress of the lethality caused by deletion of Boi1 and Boi2. These findings suggest that Boi1 and Boi2 are targets of Cdc42 that promote cell growth in a manner that is regulated by Rho3. Boi proteins contain a N-terminal SH3 domain, followed by a SAM (sterile alpha motif) domain, a proline-rich region, which mediates binding to the second SH3 domain of Bem1, and C-terminal PH domain. The PH domain is essential for its function in cell growth and is important for localization to the bud, while the SH3 domain is needed for localization to the neck. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 95

>gnl|CDD|241231 cd00821, PH, Pleckstrin homology (PH) domain

 Score = 55.4 bits (133), Expect = 5e-11
 Identities = 27/92 (29%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 63  HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDN 117
             GWL K+ G   ++WK+ WFVL D V+  YK+ +D   K    IP+       L     
Sbjct: 1   KEGWLKKRGGKGLKSWKKRWFVLFDDVLLYYKSKKDSSKKPKGLIPLSDGLEVELVSSSG 60

Query: 118 FKYVFQLKHQGQD-PLVFGADNEQSYERWMKA 148
               F+L    +       A++E+  E W++A
Sbjct: 61  KPNCFELVTPDRGRTYYLQAESEEEREEWLEA 92

PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 92

>gnl|CDD|241435 cd13281, PH_PLEKHD1, Pleckstrin homology (PH) domain containing, family D (with coiled-coil domains) member 1 PH domain

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 16/107 (14%)

Query: 62  QHSGWLHKK----SGRNWKRYWFVLKDQVMYKYKASE----------DIKALLSIPVLGY 107
           Q SG L K+        W + +FVLK+  +  Y  SE          +I     IP+ G 
Sbjct: 13  QLSGVLWKRPFGRQSAKWSKRFFVLKECFLLYYAESEKKDFEKTRRFNIHPKGVIPLGGC 72

Query: 108 ELEALNEQDNFKYVFQLKHQG-QDPLVFGADNEQSYERWMKAMREAT 153
            +EA  +     Y F + H   +  ++  AD+E+  E W+  +REAT
Sbjct: 73  SIEAGRDPGR-PYCFLISHPDFKGSIILAADSEEEQESWLDMLREAT 118

Human PLEKHD1 (also called UPF0639, pleckstrin homology domain containing, family D (with M protein repeats) member 1) is a single transcript and contains a single PH domain. PLEKHD1 is conserved in human, chimpanzee, , dog, cow, mouse, chicken, zebrafish, and Caenorhabditis elegans. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 139

>gnl|CDD|241442 cd13288, PH_Ses, Sesquipedalian family Pleckstrin homology (PH) domain

 Score = 50.3 bits (121), Expect = 8e-09
 Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 8/104 (7%)

Query: 55  TANDSGSQHSGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLSIPVL-GYELEA 111
            + +S     G+L KK  RN  +++ WFVLK  +++ ++   D +  L + VL G  +E 
Sbjct: 2   ASCNSPVDKEGYLWKKGERNTSYQKRWFVLKGNLLFYFEKKGD-REPLGVIVLEGCTVEL 60

Query: 112 LNEQDNFKYVFQLKHQGQDP--LVFGADNEQSYERWMKAMREAT 153
             +++   Y F ++  G      V  A++++  E WMKA+  A+
Sbjct: 61  SEDEEP--YAFAIRFDGPGSRSYVLAAESQEDMESWMKALSRAS 102

The sesquipedalian family has 2 mammalian members: Ses1 and Ses2, which are also callled 7 kDa inositol polyphosphate phosphatase-interacting protein 1 and 2. They play a role in endocytic trafficking and are required for receptor recycling from endosomes, both to the trans-Golgi network and the plasma membrane. Members of this family form homodimers and heterodimers. Sesquipedalian interacts with inositol polyphosphate 5-phosphatase OCRL-1 (INPP5F) also known as Lowe oculocerebrorenal syndrome protein, a phosphatase enzyme that is involved in actin polymerization and is found in the trans-Golgi network and INPP5B. Sesquipedalian contains a single PH domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 120

>gnl|CDD|241480 cd13326, PH_CNK_insect-like, Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 65  GWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK 119
           GWL+++      G  W + WFVLK   +Y +++ E  KA   I + G+ +    E  + K
Sbjct: 3   GWLYQRRRKGKGGGKWAKRWFVLKGSNLYGFRSQESTKADCVIFLPGFTVSPAPEVKSRK 62

Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWM 146
           Y F++ H G     F A++++  ++W+
Sbjct: 63  YAFKVYHTGT-VFYFAAESQEDMKKWL 88

CNK family members function as protein scaffolds, regulating the activity and the subcellular localization of RAS activated RAF. There is a single CNK protein present in Drosophila and Caenorhabditis elegans in contrast to mammals which have 3 CNK proteins (CNK1, CNK2, and CNK3). All of the CNK members contain a sterile a motif (SAM), a conserved region in CNK (CRIC) domain, and a PSD-95/DLG-1/ZO-1 (PDZ) domain, and a PH domain. A CNK2 splice variant CNK2A also has a PDZ domain-binding motif at its C terminus and Drosophila CNK (D-CNK) also has a domain known as the Raf-interacting region (RIR) that mediates binding of the Drosophila Raf kinase. This cd contains CNKs from insects, spiders, mollusks, and nematodes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 90

>gnl|CDD|241430 cd13276, PH_AtPH1, Arabidopsis thaliana Pleckstrin homolog (PH) 1 (AtPH1) PH domain

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 5/94 (5%)

Query: 59  SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKAS-EDIKALLSIPVLGYELEALNEQ 115
           S  + +GWL K+ G  + W+R WFVLK   ++ +K    D +    I  L   L   + +
Sbjct: 5   SDPEKAGWLTKQGGSIKTWRRRWFVLKQGKLFYFKDEDPDSEPRGVID-LSDCLTVKSAE 63

Query: 116 DNFKYVFQLK-HQGQDPLVFGADNEQSYERWMKA 148
           +     F  +    +      AD+E+  E W+ A
Sbjct: 64  EATNKEFAFEVSTPERTFYLIADSEKEKEEWISA 97

AtPH1 is expressed in all plant tissue and is proposed to be the plant homolog of human pleckstrin. Pleckstrin consists of two PH domains separated by a linker region, while AtPH has a single PH domain with a short N-terminal extension. AtPH1 binds PtdIns3P specifically and is thought to be an adaptor molecule since it has no obvious catalytic functions. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 117

>gnl|CDD|241453 cd13299, PH2_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 2

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%)

Query: 66  WLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD----NFKYV 121
            L KK    WK+YW VL+++ +  YK   +   +  IP+   ++  + E D    + K+ 
Sbjct: 14  VLKKKGVNQWKKYWLVLRNRSLSFYKDQSEYSPVKIIPI--DDIIDVVELDPLSKSKKWC 71

Query: 122 FQLKHQGQDPLVFGADNEQSYERWMKAMR 150
            Q+    +  + F AD+E+S  +W+ A++
Sbjct: 72  LQIITPEK-RIRFCADDEESLIKWLGALK 99

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 102

>gnl|CDD|241369 cd13215, PH-GRAM1_AGT26, Autophagy-related protein 26/Sterol 3-beta-glucosyltransferase Pleckstrin homology (PH) domain, repeat 1

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 64 SGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDI 96
          SG+L K+  R   + RYWFVLK  V+  Y++S D+
Sbjct: 32 SGYLSKRGKRTPRYNRYWFVLKGDVLSWYRSSTDL 66

ATG26 (also called UGT51/UDP-glycosyltransferase 51), a member of the glycosyltransferase 28 family, resulting in the biosynthesis of sterol glucoside. ATG26 in decane metabolism and autophagy. There are 32 known autophagy-related (ATG) proteins, 17 are components of the core autophagic machinery essential for all autophagy-related pathways and 15 are the additional components required only for certain pathways or species. The core autophagic machinery includes 1) the ATG9 cycling system (ATG1, ATG2, ATG9, ATG13, ATG18, and ATG27), 2) the phosphatidylinositol 3-kinase complex (ATG6/VPS30, ATG14, VPS15, and ATG34), and 3) the ubiquitin-like protein system (ATG3, ATG4, ATG5, ATG7, ATG8, ATG10, ATG12, and ATG16). Less is known about how the core machinery is adapted or modulated with additional components to accommodate the nonselective sequestration of bulk cytosol (autophagosome formation) or selective sequestration of specific cargos (Cvt vesicle, pexophagosome, or bacteria-containing autophagosome formation). The pexophagosome-specific additions include the ATG30-ATG11-ATG17 receptor-adaptors complex, the coiled-coil protein ATG25, and the sterol glucosyltransferase ATG26. ATG26 is necessary for the degradation of medium peroxisomes. It contains 2 GRAM domains and a single PH domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 130

>gnl|CDD|241450 cd13296, PH2_MyoX, Myosin X Pleckstrin homology (PH) domain, repeat 2

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 8/49 (16%)

Query: 64  SGWLHKKSG-------RNWKRYWFVLKDQV-MYKYKASEDIKALLSIPV 104
           SGWL+KK G       +NWK  WFVL+D V  Y     E  KAL +I +
Sbjct: 10  SGWLYKKGGGSSTLSRKNWKSRWFVLRDTVLKYYENDQEGAKALGTIDI 58

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the second PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 111

>gnl|CDD|241462 cd13308, PH_3BP2, SH3 domain-binding protein 2 Pleckstrin homology (PH) domain

 Score = 44.7 bits (106), Expect = 9e-07
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 8/98 (8%)

Query: 63  HSGWLHKKSGR-----NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ-D 116
           HSG+L KK G       W   + ++    +Y +K S+  K      + GY   A  E   
Sbjct: 11  HSGYLTKKGGSQKQLLKWPLRYVIIHKGCVYYFKNSQSAKPKGVFSLNGYNRRAAEETTS 70

Query: 117 NFKYVFQLKHQGQD--PLVFGADNEQSYERWMKAMREA 152
             K+VF++ H  +D     F A +E   + WM+++R+ 
Sbjct: 71  KKKFVFKIIHLSKDHRTWYFSAKSEDEMKEWMESLRKE 108

SH3BP2 (the gene that encodes the adaptor protein 3BP2), HD, ITU, IT10C3, and ADD1 are located near the Huntington's Disease Gene on Human Chromosome 4pl6.3. SH3BP2 lies in a region that is often missing in individuals with Wolf-Hirschhorn syndrome (WHS). Gain of function mutations in SH3BP2 causes enhanced B-cell antigen receptor (BCR)-mediated activation of nuclear factor of activated T cells (NFAT), resulting in a rare, genetic disorder called cherubism. This results in an increase in the signaling complex formation with Syk, phospholipase C-gamma2 (PLC-gamma2), and Vav1. It was recently discovered that Tankyrase regulates 3BP2 stability through ADP-ribosylation and ubiquitylation by the E3-ubiquitin ligase. Cherubism mutations uncouple 3BP2 from Tankyrase-mediated protein destruction, which results in its stabilization and subsequent hyperactivation of the Src, Syk, and Vav signaling pathways. SH3BP2 is also a potential negative regulator of the abl oncogene. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241530 cd13379, PH_RhoGap24, Rho GTPase activating protein 24 Pleckstrin homology (PH) domain

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 12/98 (12%)

Query: 65  GWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL--EALNEQDNFKY 120
           GWL K+ G  + W   WFVLK   +Y +K  ++ K L +I + G  +     NE++  K+
Sbjct: 7   GWLRKQGGFVKTWHTRWFVLKGDQLYYFKDEDETKPLGTIFLPGNRVTEHPCNEEEPGKF 66

Query: 121 VFQLKHQG--------QDPLVFGADNEQSYERWMKAMR 150
           +F++   G         +  +  A  +   E W+K++R
Sbjct: 67  LFEVVPGGDRERMTANHETYLLMASTQNDMEDWVKSIR 104

RhoGap24 (also called ARHGAP24, p73RhoGAp, and Filamin-A-associated RhoGAP) like other RhoGAPs are involved in cell polarity, cell morphology and cytoskeletal organization. They act as GTPase activators for the Rac-type GTPases by converting them to an inactive GDP-bound state and control actin remodeling by inactivating Rac downstream of Rho leading to suppress leading edge protrusion and promotes cell retraction to achieve cellular polarity and are able to suppress RAC1 and CDC42 activity in vitro. Overexpression of these proteins induces cell rounding with partial or complete disruption of actin stress fibers and formation of membrane ruffles, lamellipodia, and filopodia. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

>gnl|CDD|241452 cd13298, PH1_PH_fungal, Fungal proteins Pleckstrin homology (PH) domain, repeat 1

 Score = 43.4 bits (103), Expect = 3e-06
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 25/104 (24%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKY 120
            SGWL K+S   + WK+ WFVL+   +  YK  ++ K    I +   EL A+    + K 
Sbjct: 8   KSGWLLKRSRKTKTWKKRWFVLRPCQLSYYKDEKEYKLRRVINL--SELTAVAPLKDKKR 65

Query: 121 VFQLKHQGQDPLVFG-----------ADNEQSYERWMKAMREAT 153
                       VF            A +E+    W++A+RE +
Sbjct: 66  KN----------VFAIYTPSKNYHFQASSEKDANEWVEAIREES 99

The functions of these fungal proteins are unknown, but they all contain 2 PH domains. This cd represents the first PH repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241290 cd01259, PH_APBB1IP, Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein pleckstrin homology (PH) domain

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 20/107 (18%)

Query: 62  QHSGWLH-KKSGRN-WKRYWFVLKDQVMY-----KYKASEDIKALLSIPVLGYEL-EALN 113
           +  G+L+ K+ G+  WK+ +FVL+   +Y     K K S D++ L       Y +   LN
Sbjct: 7   EIEGFLYLKEDGKKSWKKRYFVLRASGLYYSPKGKSKESRDLQCLAQFD--DYNVYTGLN 64

Query: 114 EQDNFK----YVFQLKHQGQDPL------VFGADNEQSYERWMKAMR 150
            +  +K    + F LK                A++EQS   W+ A+R
Sbjct: 65  GKKKYKAPTDFGFCLKPNKVQEKGSKDIKYLCAEDEQSRTCWLTAIR 111

APBB1IP consists of a Ras-associated (RA) domain, a PH domain, a family-specific BPS region, and a C-terminal SH2 domain. Grb7, Grb10 and Grb14 are paralogs that are also present in this hierarchy. These adapter proteins bind a variety of receptor tyrosine kinases, including the insulin and insulin-like growth factor-1 (IGF1) receptors. Grb10 and Grb14 are important tissue-specific negative regulators of insulin and IGF1 signaling based and may contribute to type 2 (non-insulin-dependent) diabetes in humans. RA-PH function as a single structural unit and is dimerized via a helical extension of the PH domain. The PH domain here are proposed to bind phosphoinositides non-cannonically ahd are unlikely to bind an activated GTPase. The tandem RA-PH domains are present in a second adapter-protein family, MRL proteins, Caenorhabditis elegans protein MIG-1012, the mammalian proteins RIAM and lamellipodin and the Drosophila melanogaster protein Pico12, all of which are Ena/VASP-binding proteins involved in actin-cytoskeleton rearrangement. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 124

>gnl|CDD|241283 cd01252, PH_GRP1-like, General Receptor for Phosphoinositides-1-like Pleckstrin homology (PH) domain

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 7/53 (13%)

Query: 63  HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 113
             GWL K  GR  +WKR WF+L D  +Y ++ + D +    IP     LE L+
Sbjct: 5   REGWLLKLGGRVKSWKRRWFILTDNCLYYFEYTTDKEPRGIIP-----LENLS 52

GRP1/cytohesin3 and the related proteins ARNO (ARF nucleotide-binding site opener)/cytohesin-2 and cytohesin-1 are ARF exchange factors that contain a pleckstrin homology (PH) domain thought to target these proteins to cell membranes through binding polyphosphoinositides. The PH domains of all three proteins exhibit relatively high affinity for PtdIns(3,4,5)P3. Within the Grp1 family, diglycine (2G) and triglycine (3G) splice variants, differing only in the number of glycine residues in the PH domain, strongly influence the affinity and specificity for phosphoinositides. The 2G variants selectively bind PtdIns(3,4,5)P3 with high affinity,the 3G variants bind PtdIns(3,4,5)P3 with about 30-fold lower affinity and require the polybasic region for plasma membrane targeting. These ARF-GEFs share a common, tripartite structure consisting of an N-terminal coiled-coil domain, a central domain with homology to the yeast protein Sec7, a PH domain, and a C-terminal polybasic region. The Sec7 domain is autoinhibited by conserved elements proximal to the PH domain. GRP1 binds to the DNA binding domain of certain nuclear receptors (TRalpha, TRbeta, AR, ER, but not RXR), and can repress thyroid hormone receptor (TR)-mediated transactivation by decreasing TR-complex formation on thyroid hormone response elements. ARNO promotes sequential activation of Arf6, Cdc42 and Rac1 and insulin secretion. Cytohesin acts as a PI 3-kinase effector mediating biological responses including cell spreading and adhesion, chemotaxis, protein trafficking, and cytoskeletal rearrangements, only some of which appear to depend on their ability to activate ARFs. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 118

>gnl|CDD|241529 cd13378, PH_RhoGAP2, Rho GTPase activating protein 2 Pleckstrin homology (PH) domain

 Score = 42.2 bits (99), Expect = 8e-06
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 14/101 (13%)

Query: 64  SGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL--NEQDNFK 119
           +GWL K+    +NW++ WFVL+   ++ YK  E+ K    I + G ++  L  N ++  K
Sbjct: 6   AGWLKKQRSIMKNWQQRWFVLRGDQLFYYKDEEETKPQGCISLQGSQVNELPPNPEEPGK 65

Query: 120 YVFQLKHQGQ----------DPLVFGADNEQSYERWMKAMR 150
           ++F++   G           +  +  A+++   E W+KA+R
Sbjct: 66  HLFEILPGGAGDREKVPMNHEAFLLMANSQSDMEDWVKAIR 106

RhoGAP2 (also called RhoGap22 or ArhGap22) are involved in cell polarity, cell morphology and cytoskeletal organization. They activate a GTPase belonging to the RAS superfamily of small GTP-binding proteins. The encoded protein is insulin-responsive, is dependent on the kinase Akt, and requires the Akt-dependent 14-3-3 binding protein which binds sequentially to two serine residues resulting in regulation of cell motility. Members here contain an N-terminal PH domain followed by a RhoGAP domain and either a BAR or TATA Binding Protein (TBP) Associated Factor 4 (TAF4) domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241296 cd01265, PH_TBC1D2A, TBC1 domain family member 2A pleckstrin homology (PH) domain

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 19/99 (19%)

Query: 62  QHSGWLHKKSG----RNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLG----YELE 110
           +  G+L+K       + WK  WFV  +   Q+ Y Y++ +DI  L SI + G    Y+ E
Sbjct: 1   RLCGYLNKLETKGLLKTWKSRWFVFDERKCQLYY-YRSPQDITPLGSIDLSGAAFSYDPE 59

Query: 111 ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAM 149
           A          F++   G+   +  A + Q+   W++ +
Sbjct: 60  AEKGT------FEIHTPGRV-YILKASDRQAMLYWLQEL 91

TBC1D2A (also called PARIS-1/Prostate antigen recognized and identified by SEREX 1 and ARMUS) contains a PH domain and a TBC-type GTPase catalytic domain. TBC1D2A integrates signaling between Arf6, Rac1, and Rab7 during junction disassembly. Activated Rac1 recruits TBC1D2A to locally inactivate Rab7 via its C-terminal TBC/RabGAP domain and facilitate E-cadherin degradation in lysosomes. The TBC1D2A PH domain mediates localization at cell-cell contacts and coprecipitates with cadherin complexes. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 101

>gnl|CDD|241460 cd13306, PH1_AFAP, Actin filament associated protein family Pleckstrin homology (PH) domain, repeat 1

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)

Query: 67  LHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK-YVFQLK 125
             KK    W +   V+KD  +  YK+S+D +  L + +LG  +  + +    K +  ++ 
Sbjct: 19  WRKKWLGQWAKQLCVIKDNRLLCYKSSKDQQPQLDLNLLGCNVIYVPKDGRRKKHELKIT 78

Query: 126 HQGQDPLVFGADNEQSYERWMKAMREAT 153
             G + LV    +++  E W+K +RE +
Sbjct: 79  PPGAEALVLAVQSKEQAEEWLKVIREVS 106

There are 3 members of the AFAP family of adaptor proteins: AFAP1, AFAP1L1, and AFAP1L2/XB130. AFAP1 is a cSrc binding partner and actin cross-linking protein. AFAP1L1 is thought to play a similar role to AFAP1 in terms of being an actin cross-linking protein, but it preferentially binds to cortactin and not cSrc, thereby playing a role in invadosome formation. AFAP1L2 is a cSrc binding protein, but does not bind to actin filaments. AFAP1L2 acts as an intermediary between the RET/PTC kinase and PI-3kinase pathway in the thyroid. The AFAPs share a similar structure of a SH3 binding motif, 3 SH2 binding motifs, 2 PH domains, a coiled-coil region corresponding to the AFAP1 leucine zipper, and an actin binding domain. The amino terminal PH1 domain of AFAP1 has been known to function in intra-molecular regulation of AFAP1. In addition, the PH1 domain is a binding partner for PKCa and phospholipids. This cd is the first PH domain of AFAP. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 107

>gnl|CDD|241284 cd01253, PH_ARHGAP21-like, ARHGAP21 and related proteins pleckstrin homology (PH) domain

 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 34/114 (29%)

Query: 65  GWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE 114
           GWLH K          S R+WK+ W VL+   +Y YK   +    LS         A + 
Sbjct: 4   GWLHFKQSVLEKGKRASDRSWKQVWAVLRGHSLYLYKDKRETSPALSA--------AEDS 55

Query: 115 QDNF----------------KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           +                   K VF+L        +F A++      W+KA++E 
Sbjct: 56  EQRIDIRSCIVDIAYSYTKRKNVFRLTTSDGSEYLFQAEDRDDMLGWIKAIQEN 109

ARHGAP family genes encode Rho/Rac/Cdc42-like GTPase activating proteins with a RhoGAP domain. These proteins functions as a GTPase-activating protein (GAP) for RHOA and CDC42. ARHGAP21 controls the Arp2/3 complex and F-actin dynamics at the Golgi complex by regulating the activity of the small GTPase Cdc42. It is recruited to the Golgi by to GTPase, ARF1, through its PH domain and its helical motif. It is also required for CTNNA1 recruitment to adherens junctions. ARHGAP21 and it related proteins all contains a PH domain and a RhoGAP domain. Some of the members have additional N-terminal domains including PDZ, SH3, and SPEC. The ARHGAP21 PH domain interacts with the GTPbound forms of both ARF1 and ARF6 ARF-binding domain/ArfBD. The members here include: ARHGAP15, ARHGAP21, and ARHGAP23. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 113

>gnl|CDD|241426 cd13272, PH_INPP4A_INPP4B, Type I inositol 3,4-bisphosphate 4-phosphatase and Type II inositol 3,4-bisphosphate 4-phosphatase Pleckstrin homology (PH) domain

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 20/92 (21%), Positives = 43/92 (46%), Gaps = 3/92 (3%)

Query: 62  QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYV 121
           Q   +  +KS    +R WF L+  +++ +K++E       + VL        E D   + 
Sbjct: 5   QMGFF--RKSEVFKER-WFKLRGNLLFYFKSNEPGSEPAGVIVLENCRVQREEPDPGGFA 61

Query: 122 FQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
           F L  + +    F   +E+  + W++A+++A+
Sbjct: 62  FSLVFKDEKKYRFSCRSEEERDEWIEAIKQAS 93

INPP4A (also called Inositol polyphosphate 4-phosphatase type I) and INPP4B (also called Inositol polyphosphate 4-phosphatase type II) both catalyze the hydrolysis of the 4-position phosphate of phosphatidylinositol 3,4-bisphosphate and inositol 1,3,4-trisphosphate. They differ in that INPP4A additionally catalyzes the hydrolysis of the 4-position phosphate of inositol 3,4-bisphosphate, while INPP4B catalyzes the hydrolysis of the 4-position phosphate of inositol 1,4-bisphosphate. They both have a single PH domain followed by a C2 domain. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 116

>gnl|CDD|241271 cd01238, PH_Btk, Bruton's tyrosine kinase pleckstrin homology (PH) domain

 Score = 39.5 bits (93), Expect = 1e-04
 Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 13/100 (13%)

Query: 64  SGWLHKKS-GR------NWKRYWFVLKDQVM--YKYKASEDIKALLSIP---VLGYELEA 111
            G L K+S G+      N+K  WFVL    +  Y+    +  K   SI    +   E   
Sbjct: 2   EGLLVKRSQGKKRFGPVNYKERWFVLTKSSLSYYEGDGGKRGKEKGSIDLSKIKCVEEVK 61

Query: 112 LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMRE 151
            +     KY FQ+ +     L   A +E+  + W+ A+R+
Sbjct: 62  DDASFERKYPFQVVY-DDYTLYVFAPSEEDRDEWILALRK 100

Btk is a member of the Tec family of cytoplasmic protein tyrosine kinases that includes BMX, IL2-inducible T-cell kinase (Itk) and Tec. Btk plays a role in the maturation of B cells. Tec proteins general have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. The Btk PH domain binds phosphatidylinositol 3,4,5-trisphosphate and responds to signalling via phosphatidylinositol 3-kinase. The PH domain is also involved in membrane anchoring which is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain. This results in severe human immunodeficiency known as X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice.PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 140

>gnl|CDD|241270 cd01237, PH_fermitin, Fermitin family pleckstrin homology (PH) domain

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 69  KKSGRNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLK- 125
           K + + +KRYWFV KD  +  YK+ E+     +  I + G E+         K+  +L  
Sbjct: 14  KFTLKGFKRYWFVFKDTHLSYYKSKEESNGAPIQQINLKGCEVTPDVNVSQGKFGIKLLI 73

Query: 126 --HQGQDPLVFGADNEQSYERWMKAMREA 152
              +G + +    D+E+ Y +WM A R A
Sbjct: 74  PSPEGMNEVWLRCDSEEQYAKWMAACRLA 102

Fermitin functions as a mediator of integrin inside-out signalling. The recruitment of Fermitin proteins and Talin to the membrane mediates the terminal event of integrin signalling, via interaction with integrin beta subunits. Fermatin has FERM domain interrupted with a pleckstrin homology (PH) domain. Fermitin family homologs (Fermt1, 2, and 3, also known as Kindlins) are each encoded by a different gene. In mammalian studies, Fermt1 is generally expressed in epithelial cells, Fermt2 is expressed inmuscle tissues, and Fermt3 is expressed in hematopoietic lineages. Specifically Fermt2 is expressed in smooth and striated muscle tissues in mice and in the somites (a trunk muscle precursor) and neural crest in Xenopus embryos. As such it has been proposed that Fermt2 plays a role in cardiomyocyte and neural crest differentiation. Expression of mammalian Fermt3 is associated with hematopoietic lineages: the anterior ventral blood islands, vitelline veins, and early myeloid cells. In Xenopus embryos this expression, also include the notochord and cement gland. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241436 cd13282, PH1_PLEKHH1_PLEKHH2, Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) members 1 and 2 (PLEKHH1) PH domain, repeat 1

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 64  SGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGY 107
           +G+L K  G+   WKR WFVLK+  ++ YK+  D+  K    I + G 
Sbjct: 2   AGYLTKLGGKVKTWKRRWFVLKNGELFYYKSPNDVIRKPQGQIALDGS 49

PLEKHH1 and PLEKHH2 (also called PLEKHH1L) are thought to function in phospholipid binding and signal transduction. There are 3 Human PLEKHH genes: PLEKHH1, PLEKHH2, and PLEKHH3. There are many isoforms, the longest of which contain a FERM domain, a MyTH4 domain, two PH domains, a peroximal domain, a vacuolar domain, and a coiled coil stretch. The FERM domain has a cloverleaf tripart structure (FERM_N, FERM_M, FERM_C/N, alpha-, and C-lobe/A-lobe, B-lobe, C-lobe/F1, F2, F3). The C-lobe/F3 within the FERM domain is part of the PH domain family. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241414 cd13260, PH_RASA1, RAS p21 protein activator (GTPase activating protein) 1 Pleckstrin homology (PH) domain

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 14/100 (14%)

Query: 63  HSGWLHKKSGRN--WKRYWFVL--KDQVMYKYKASEDIKAL----LSIPVLGYELEALNE 114
             G+L KKSG+N  WK  +FVL   +Q +Y ++  +  K      LS   +    ++L  
Sbjct: 5   KKGYLLKKSGKNKKWKNLYFVLEGAEQHLYFFENEKRTKPKGLIDLSYSSVYPVHDSLFG 64

Query: 115 QDNFKYVFQLKHQGQDPLV---FGADNEQSYERWMKAMRE 151
           + N    FQ+  +  +        AD  +  + WMKA+R 
Sbjct: 65  RPN---CFQIVVRALNESTIYYLCADTAELAQDWMKALRA 101

RASA1 (also called RasGap1 or p120) is a member of the RasGAP family of GTPase-activating proteins. RASA1 contains N-terminal SH2-SH3-SH2 domains, followed by two C2 domains, a PH domain, a RasGAP domain, and a BTK domain. Splice variants lack the N-terminal domains. It is a cytosolic vertebrate protein that acts as a suppressor of RAS via its C-terminal GAP domain function, enhancing the weak intrinsic GTPase activity of RAS proteins resulting in the inactive GDP-bound form of RAS, allowing control of cellular proliferation and differentiation. Additionally, it is involved in mitogenic signal transmission towards downstream interacting partners through its N-terminal SH2-SH3-SH2 domains. RASA1 interacts with a number of proteins including: G3BP1, SOCS3, ANXA6, Huntingtin, KHDRBS1, Src, EPHB3, EPH receptor B2, Insulin-like growth factor 1 receptor, PTK2B, DOK1, PDGFRB, HCK, Caveolin 2, DNAJA3, HRAS, GNB2L1 and NCK1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 103

>gnl|CDD|241268 cd01235, PH_Sbf1_hMTMR5, Set binding factor 1 (also called Human MTMR5) Pleckstrin Homology (PH) domain

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 6/40 (15%)

Query: 63 HSGWLHKKSG--RNWKRYWFVL---KDQVMYKYKASEDIK 97
            G+L+K+    + WK+ WFVL   K Q+ Y Y++ ED K
Sbjct: 5  CEGYLYKRGALLKGWKQRWFVLDLTKHQLRY-YESKEDTK 43

Sbf1 is a myotubularin-related pseudo-phosphatase. Both Sbf1 and myotubularin interact with the SET domains of Hrx and other epigenetic regulatory proteins, but Sbf1 lacks phosphatase activity due to several amino acid changes in its structurally preserved catalytic pocket. It contains pleckstrin (PH), GEF, and myotubularin homology domains that are thought to be responsible for signaling and growth control. Sbf1 functions as an inhibitor of cellular growth. The N-terminal GEF homology domain serves to inhibit the transforming effects of Sbf1. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 106

>gnl|CDD|241451 cd13297, PH3_MyoX-like, Myosin X-like Pleckstrin homology (PH) domain, repeat 3

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 4/47 (8%)

Query: 53 EVTANDSGSQHSGWLHKKSG-RNW---KRYWFVLKDQVMYKYKASED 95
          +    D      GWL K+ G       K+ WFVL    +  YK+SE 
Sbjct: 5  QTDEGDQEVIEKGWLLKEGGKGGNLTKKKRWFVLTPNSLDYYKSSER 51

MyoX, a MyTH-FERM myosin, is a molecular motor that has crucial functions in the transport and/or tethering of integrins in the actin-based extensions known as filopodia, microtubule binding, and in netrin-mediated axon guidance. It functions as a dimer. MyoX walks on bundles of actin, rather than single filaments, unlike the other unconventional myosins. MyoX is present in organisms ranging from humans to choanoflagellates, but not in Drosophila and Caenorhabditis elegans.MyoX consists of a N-terminal motor/head region, a neck made of 3 IQ motifs, and a tail consisting of a coiled-coil domain, a PEST region, 3 PH domains, a myosin tail homology 4 (MyTH4), and a FERM domain at its very C-terminus. The first PH domain in the MyoX tail is a split-PH domain, interupted by the second PH domain such that PH 1a and PH 1b flanks PH 2. The third PH domain (PH 3) follows the PH 1b domain. This cd contains the third MyoX PH repeat. PLEKHH3/Pleckstrin homology (PH) domain containing, family H (with MyTH4 domain) member 3 is also part of this CD and like MyoX contains a FERM domain, a MyTH4 domain, and a single PH domain. Not much is known about the function of PLEKHH3. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 123

>gnl|CDD|241392 cd13238, PH2_FGD4_insect-like, FYVE, RhoGEF and PH domain containing/faciogenital dysplasia protein 4 pleckstrin homology (PH) domain, C-terminus, in insect and related arthropods

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 12/96 (12%)

Query: 64  SGWLHKKS--GRNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGY---ELEALNEQDN 117
           SG+L  K+   + W R WF L  D V+Y YK+ ED  AL + PV G+     E  + +D 
Sbjct: 2   SGYLKLKTNGRKTWIRRWFALHPDFVLYSYKSEEDKLALTATPVPGFLVTLGEKGSAEDP 61

Query: 118 FK-----YVFQLKHQGQDPLVFGADNEQSYERWMKA 148
                    F++ H  +    F A++    ++W+ A
Sbjct: 62  LNDKDRIRAFKMFHV-KKSYYFQANDGDEKDKWVHA 96

In general, FGDs have a RhoGEF (DH) domain, followed by an N-terminal PH domain, a FYVE domain and a C-terminal PH domain. All FGDs are guanine nucleotide exchange factors that activates the Rho GTPase Cdc42, an important regulator of membrane trafficking. The RhoGEF domain is responsible for GEF catalytic activity, while the N-terminal PH domain is involved in intracellular targeting of the DH domain. FGD4 is one of the genes associated with Charcot-Marie-Tooth neuropathy type 4 (CMT4), a group of progressive motor and sensory axonal and demyelinating neuropathies that are distinguished from other forms of CMT by autosomal recessive inheritance. Those affected have distal muscle weakness and atrophy associated with sensory loss and, frequently, pes cavus foot deformity. This cd contains insects, crustaceans, and chelicerates. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 96

>gnl|CDD|241409 cd13255, PH_TAAP2-like, Tandem PH-domain-containing protein 2 Pleckstrin homology (PH) domain

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 63  HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPV 104
            +G+L KK  R   WK+ WFVL+   +  YK  ++ + L  I +
Sbjct: 8   KAGYLEKKGERRKTWKKRWFVLRPTKLAYYKNDKEYRLLRLIDL 51

The binding of TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP2 contains two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. The members here are most sequence similar to TAPP2 proteins, but may not be actual TAPP2 proteins. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 110

>gnl|CDD|241455 cd13301, PH1_Pleckstrin_2, Pleckstrin 2 Pleckstrin homology (PH) domain, repeat 1

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 65  GWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA-LNEQDNFKYV 121
           G+L KK     NWK  WFVL +  +  YK   D      I + G  + +   E +    V
Sbjct: 7   GFLVKKGHVVNNWKARWFVLLEDKLEYYKKKTDSSPKGMILLKGCTITSPCLEYEKRPLV 66

Query: 122 FQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
           F+L           A + +  + W K + +A T
Sbjct: 67  FKLTTAKGQDHFLQACSREERDAWAKDITKAIT 99

Pleckstrin is a protein found in platelets. This name is derived from platelet and leukocyte C kinase substrate and the KSTR string of amino acids. Pleckstrin 2 contains two PH domains and a DEP (dishvelled, egl-10, and pleckstrin) domain. Unlike pleckstrin 1, pleckstrin 2 does not contain obvious sites of PKC phosphorylation. Pleckstrin 2 plays a role in actin rearrangement, large lamellipodia and peripheral ruffle formation, and may help orchestrate cytoskeletal arrangement. The PH domains of pleckstrin 2 are thought to contribute to lamellipodia formation. This cd contains the first PH domain repeat. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 108

>gnl|CDD|241421 cd13267, PH_DOCK-D, Dedicator of cytokinesis-D subfamily Pleckstrin homology (PH) domain

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 28/122 (22%)

Query: 56  ANDSGSQHSGWLHKK----------SGRNWKRYWFVLKDQV-------MYKYKASEDIKA 98
           + +SG    G+L+K           + +++KR +F LK  V        YK + S++ K 
Sbjct: 1   SGESGITKEGYLYKGPENSSMFISLAMKSFKRRFFHLKQLVDGSYILEFYKDEKSKEAKG 60

Query: 99  LLSIPVLGYELEALNE-QDNFK---YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
            +        L++      N K   + F+L+ Q     V  A++E   + W+  + +   
Sbjct: 61  TIY-------LDSCTGVVQNSKRRKFCFELRMQDGKSYVLAAESESEMDDWISKLNKILQ 113

Query: 155 LS 156
           ++
Sbjct: 114 IN 115

DOCK-D subfamily (also called Zizimin subfamily) consists of Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2. DOCK-D has a N-terminal DUF3398 domain, a PH-like domain, a Dock Homology Region 1, DHR1 (also called CZH1), a C2 domain, and a C-terminal DHR2 domain (also called CZH2). Zizimin1 is enriched in the brain, lung, and kidney; zizimin2 is found in B and T lymphocytes, and zizimin3 is enriched in brain, lung, spleen and thymus. Zizimin1 functions in autoinhibition and membrane targeting. Zizimin2 is an immune-related and age-regulated guanine nucleotide exchange factor, which facilitates filopodial formation through activation of Cdc42, which results in activation of cell migration. No function has been determined for Zizimin3 to date. The N-terminal half of zizimin1 binds to the GEF domain through three distinct areas, including CZH1, to inhibit the interaction with Cdc42. In addition its PH domain binds phosphoinositides and mediates zizimin1 membrane targeting. DOCK is a family of proteins involved in intracellular signalling networks. They act as guanine nucleotide exchange factors for small G proteins of the Rho family, such as Rac and Cdc42. There are 4 subfamilies of DOCK family proteins based on their sequence homology: A-D. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 125

>gnl|CDD|241425 cd13271, PH2_TAPP1_2, Tandem PH-domain-containing proteins 1 and 2 Pleckstrin homology (PH) domain, C-terminal repeat

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 64  SGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIP 103
           SG+  K+    +NWKR +F+L D  +  YK+  D + L +IP
Sbjct: 11  SGYCVKQGAVRKNWKRRYFILDDNTISYYKSETDKEPLRTIP 52

The binding of TAPP1 (also called PLEKHA1/pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1) and TAPP2 (also called PLEKHA2) adaptors to PtdIns(3,4)P(2), but not PI(3,4, 5)P3, function as negative regulators of insulin and PI3K signalling pathways (i.e. TAPP/utrophin/syntrophin complex). TAPP1 and TAPP2 contain two sequential PH domains in which the C-terminal PH domain specifically binds PtdIns(3,4)P2 with high affinity. The N-terminal PH domain does not interact with any phosphoinositide tested. They also contain a C-terminal PDZ-binding motif that interacts with several PDZ-binding proteins, including PTPN13 (known previously as PTPL1 or FAP-1) as well as the scaffolding proteins MUPP1 (multiple PDZ-domain-containing protein 1), syntrophin and utrophin. PH domains have diverse functions, but in general are involved in targeting proteins to the appropriate cellular location or in the interaction with a binding partner. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. Less than 10% of PH domains bind phosphoinositide phosphates (PIPs) with high affinity and specificity. PH domains are distinguished from other PIP-binding domains by their specific high-affinity binding to PIPs with two vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3 which results in targeting some PH domain proteins to the plasma membrane. A few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
cd01260	96	PH_CNK Connector enhancer of KSR (Kinase suppresso	99.91
cd01233	100	Unc104 Unc-104 pleckstrin homology (PH) domain. Un	99.9
cd01251	103	PH_centaurin_alpha Centaurin alpha Pleckstrin homo	99.89
cd01265	95	PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain	99.89
cd01252	125	PH_cytohesin Cytohesin Pleckstrin homology (PH) do	99.87
cd01238	106	PH_Tec Tec pleckstrin homology (PH) domain. Tec pl	99.87
cd01264	101	PH_melted Melted pleckstrin homology (PH) domain.	99.87
cd01247	91	PH_GPBP Goodpasture antigen binding protein (GPBP)	99.87
cd01257	101	PH_IRS Insulin receptor substrate (IRS) pleckstrin	99.87
cd01235	101	PH_SETbf Set binding factor Pleckstrin Homology (P	99.87
cd01266	108	PH_Gab Gab (Grb2-associated binder) pleckstrin hom	99.84
cd01246	91	PH_oxysterol_bp Oxysterol binding protein (OSBP) P	99.84
cd01236	104	PH_outspread Outspread Pleckstrin homology (PH) do	99.83
cd01250	94	PH_centaurin Centaurin Pleckstrin homology (PH) do	99.82
cd01245	98	PH_RasGAP_CG5898 RAS GTPase-activating protein (GA	99.82
PF00169	104	PH: PH domain; InterPro: IPR001849 The pleckstrin	99.8
cd01230	117	PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6	99.8
cd01241	102	PH_Akt Akt pleckstrin homology (PH) domain. Akt pl	99.79
cd01244	98	PH_RasGAP_CG9209 RAS_GTPase activating protein (GA	99.79
cd01253	104	PH_beta_spectrin Beta-spectrin pleckstrin homology	99.77
cd01263	122	PH_anillin Anillin Pleckstrin homology (PH) domain	99.73
KOG0930|consensus	395		99.73
PF15409	89	PH_8: Pleckstrin homology domain	99.71
PF15410	119	PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN	99.71
cd01237	106	Unc112 Unc-112 pleckstrin homology (PH) domain. Un	99.67
cd01256	110	PH_dynamin Dynamin pleckstrin homology (PH) domain	99.64
cd01254	121	PH_PLD Phospholipase D (PLD) pleckstrin homology (	99.62
smart00233	102	PH Pleckstrin homology domain. Domain commonly fou	99.62
cd01220	99	PH_CDEP Chondrocyte-derived ezrin-like domain cont	99.61
cd01219	101	PH_FGD FGD (faciogenital dysplasia protein) plecks	99.59
PF15413	112	PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FE	99.57
cd00821	96	PH Pleckstrin homology (PH) domain. Pleckstrin hom	99.56
cd01234	117	PH_CADPS CADPS (Ca2+-dependent activator protein)	99.55
cd00900	99	PH-like Pleckstrin homology-like domain. Pleckstri	99.49
KOG1090|consensus	1732		99.2
cd01218	104	PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain	99.16
cd01259	114	PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor pr	99.15
KOG0932|consensus	774		99.14
cd01242	112	PH_ROK Rok (Rho- associated kinase) pleckstrin hom	99.13
cd01239	117	PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin hom	99.1
KOG2059|consensus	800		99.07
cd01243	122	PH_MRCK MRCK (myotonic dystrophy-related Cdc42-bin	99.05
cd01249	104	PH_oligophrenin Oligophrenin Pleckstrin homology (	99.05
KOG0690|consensus	516		98.92
cd01261	112	PH_SOS Son of Sevenless (SOS) Pleckstrin homology	98.9
PF14593	104	PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.	98.82
KOG3640|consensus	1116		98.78
PLN00188	719	enhanced disease resistance protein (EDR2); Provis	98.68
KOG3751|consensus	622		98.63
PTZ00267	478	NIMA-related protein kinase; Provisional	98.55
cd01224	109	PH_Collybistin Collybistin pleckstrin homology (PH	98.53
KOG0521|consensus	785		98.52
cd01258	108	PH_syntrophin Syntrophin pleckstrin homology (PH)	98.5
KOG3543|consensus	1218		98.46
cd01225	111	PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-	98.42
KOG1117|consensus	1186		98.34
cd01240	116	PH_beta-ARK Beta adrenergic receptor kinase 1(beta	98.32
KOG3531|consensus	1036		98.27
cd01262	89	PH_PDK1 3-Phosphoinositide dependent protein kinas	98.26
PLN02866	1068	phospholipase D	98.15
cd01222	97	PH_clg Clg (common-site lymphoma/leukemia guanine	98.12
cd01226	100	PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin	98.03
KOG1739|consensus	611		98.03
PTZ00283	496	serine/threonine protein kinase; Provisional	97.94
PF15406	112	PH_6: Pleckstrin homology domain	97.93
PF15408	104	PH_7: Pleckstrin homology domain	97.86
PF12814	123	Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin	97.8
cd01231	107	PH_Lnk LNK-family Pleckstrin homology (PH) domain.	97.77
KOG1451|consensus	812		97.71
KOG0248|consensus	936		97.69
KOG1117|consensus	1186		97.56
KOG3723|consensus	851		97.55
cd01228	96	PH_BCR-related BCR (breakpoint cluster region)-rel	97.45
cd01221	125	PH_ephexin Ephexin Pleckstrin homology (PH) domain	97.42
cd01223	116	PH_Vav Vav pleckstrin homology (PH) domain. Vav pl	97.3
KOG4424|consensus	623		97.23
PF15404	185	PH_4: Pleckstrin homology domain	97.23
cd01232	114	PH_TRIO Trio pleckstrin homology (PH) domain. Trio	97.01
KOG1738|consensus	638		96.99
KOG3549|consensus	505		96.69
KOG4424|consensus	623		96.52
cd01248	115	PH_PLC Phospholipase C (PLC) pleckstrin homology (	96.52
KOG4807|consensus	593		96.42
KOG0705|consensus	749		96.33
PF15405	135	PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.	96.27
PF15411	116	PH_10: Pleckstrin homology domain	96.25
KOG4236|consensus	888		96.19
KOG1737|consensus	799		95.94
KOG3727|consensus	664		95.6
cd01227	133	PH_Dbs Dbs (DBL's big sister) pleckstrin homology	94.98
KOG2070|consensus	661		94.35
KOG0248|consensus	936		93.52
cd01255	160	PH_TIAM TIAM Pleckstrin homology (PH) domain. TIAM	93.38
KOG1264|consensus	1267		93.22
KOG0517|consensus	2473		91.06
KOG3531|consensus	1036		88.59
KOG3551|consensus	506		88.05
PF08458	110	PH_2: Plant pleckstrin homology-like region; Inter	86.8
KOG4407|consensus	1973		86.5

>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain

Probab=99.91  E-value=2.5e-23  Score=132.72  Aligned_cols=89  Identities=31%  Similarity=0.624  Sum_probs=78.8

Q ss_pred             EEEEEEeccC--C----CceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          63 HSGWLHKKSG--R----NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        63 ~~G~L~k~~~--k----~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      ++|||+|+++  +    .|++|||||.++.|+||+++.+..+.+.|+|.++++....+. .++++|.|.+++.++|+|+|
T Consensus         2 ~~GwL~kk~~~~g~~~k~WkkrwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~-~k~~~F~I~~~~~~~~~f~a   80 (96)
T cd01260           2 CDGWLWKRKKPGGFMGQKWARRWFVLKGTTLYWYRSKQDEKAEGLIFLSGFTIESAKEV-KKKYAFKVCHPVYKSFYFAA   80 (96)
T ss_pred             ceeEEEEecCCCCccccCceeEEEEEECCEEEEECCCCCCccceEEEccCCEEEEchhc-CCceEEEECCCCCcEEEEEe
Confidence            6899999864  3    899999999999999999999999999999999988765443 37799999966669999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy2209         137 DNEQSYERWMKAMREA  152 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a  152 (156)
                      +|+++++.||.+|+.|
T Consensus        81 ~s~~e~~~Wi~ai~~~   96 (96)
T cd01260          81 ETLDDLSQWVNHLITA   96 (96)
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            9999999999999876

Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet

>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain

Probab=99.90  E-value=5.6e-23  Score=131.98  Aligned_cols=92  Identities=16%  Similarity=0.271  Sum_probs=80.1

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCC---CceeEEEEEeCCCccEEEE
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD---NFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~---~~~~~f~i~~~~~~~~~~~  135 (156)
                      +.++|||.|+++  +.|++|||+|+++.|+||+++.+..+.+.|+|.++.+...++..   +++++|.|. +..++|+|+
T Consensus         2 v~k~G~L~Kkg~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~I~L~~~~v~~~~~~~~~~~~~~~F~I~-t~~rt~~~~   80 (100)
T cd01233           2 VSKKGYLNFPEETNSGWTRRFVVVRRPYLHIYRSDKDPVERGVINLSTARVEHSEDQAAMVKGPNTFAVC-TKHRGYLFQ   80 (100)
T ss_pred             cceeEEEEeeCCCCCCcEEEEEEEECCEEEEEccCCCccEeeEEEecccEEEEccchhhhcCCCcEEEEE-CCCCEEEEE
Confidence            468999999986  58999999999999999999998899999999988777655432   357899998 778999999


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q psy2209         136 ADNEQSYERWMKAMREAT  153 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~  153 (156)
                      |+|++++.+||.+|+...
T Consensus        81 A~s~~e~~~Wi~ai~~~~   98 (100)
T cd01233          81 ALSDKEMIDWLYALNPLY   98 (100)
T ss_pred             cCCHHHHHHHHHHhhhhh
Confidence            999999999999997653

Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.

>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain

Probab=99.89  E-value=3.2e-22  Score=129.03  Aligned_cols=91  Identities=22%  Similarity=0.389  Sum_probs=74.5

Q ss_pred             EEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCe----EEEEc-cC--CCCceeEEEEEeCCCccE
Q psy2209          63 HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY----ELEAL-NE--QDNFKYVFQLKHQGQDPL  132 (156)
Q Consensus        63 ~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~----~~~~~-~~--~~~~~~~f~i~~~~~~~~  132 (156)
                      ++|||.|+|+   +.|++|||+|+++.|+||+++.+..+.|.|+|..+    .+... ++  .....++|.|. +.+++|
T Consensus         1 KeG~L~K~g~~~~k~wkkRwFvL~~~~L~Yyk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~F~i~-t~~Rty   79 (103)
T cd01251           1 KEGFMEKTGPKHTEGFKKRWFTLDDRRLMYFKDPLDAFAKGEVFLGSQEDGYEVREGLPPGTQGNHWYGVTLV-TPERKF   79 (103)
T ss_pred             CceeEEecCCCCCCCceeEEEEEeCCEEEEECCCCCcCcCcEEEeeccccceeEeccCCccccccccceEEEE-eCCeEE
Confidence            4799999985   58999999999999999999999999999999643    33221 11  11223599998 668999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHh
Q psy2209         133 VFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       133 ~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +|+|+|++++.+||+||+.|..
T Consensus        80 ~l~a~s~~e~~~Wi~ai~~v~~  101 (103)
T cd01251          80 LFACETEQDRREWIAAFQNVLS  101 (103)
T ss_pred             EEECCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999864

Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici

>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain

Probab=99.89  E-value=3.4e-22  Score=127.17  Aligned_cols=87  Identities=25%  Similarity=0.499  Sum_probs=75.0

Q ss_pred             EEEEEEeccC----CCceEEEEEEe--CCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          63 HSGWLHKKSG----RNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        63 ~~G~L~k~~~----k~Wk~r~~vL~--~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      .+|||+|+++    +.|++|||||.  ++.|+||+++.+..|.|.|+|.++.+...++.  .++.|.|. +.+++|+|+|
T Consensus         1 l~GyL~K~g~~~~~K~WkkRWFvL~~~~~~L~Yyk~~~d~~p~G~I~L~~~~~~~~~~~--~~~~F~i~-t~~r~y~l~A   77 (95)
T cd01265           1 LCGYLHKIEGKGPLRGRRSRWFALDDRTCYLYYYKDSQDAKPLGRVDLSGAAFTYDPRE--EKGRFEIH-SNNEVIALKA   77 (95)
T ss_pred             CcccEEEecCCCCCcCceeEEEEEcCCCcEEEEECCCCcccccceEECCccEEEcCCCC--CCCEEEEE-cCCcEEEEEC
Confidence            3799999875    58999999997  45899999999999999999999777654333  36899998 6788999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy2209         137 DNEQSYERWMKAMREA  152 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a  152 (156)
                      +|++++..||.+|+.+
T Consensus        78 ~s~~e~~~Wi~al~~~   93 (95)
T cd01265          78 SSDKQMNYWLQALQSK   93 (95)
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999999875

PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain

Probab=99.87  E-value=3e-21  Score=128.76  Aligned_cols=91  Identities=24%  Similarity=0.632  Sum_probs=79.2

Q ss_pred             EEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCC-----------
Q psy2209          63 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ-----------  129 (156)
Q Consensus        63 ~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~-----------  129 (156)
                      ++|||.|+++  +.|++|||+|.++.|+||+++.+..+.+.|+|.++.+...++ ..++++|.|..+.+           
T Consensus         2 k~G~L~K~~~~~~~WkkRwfvL~~~~L~yyk~~~~~~~~g~I~L~~~~v~~~~~-~~~~~~F~i~~~~~~~~i~~~~~~~   80 (125)
T cd01252           2 REGWLLKQGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENVSIREVED-PSKPFCFELFSPSDKQQIKACKTES   80 (125)
T ss_pred             cEEEEEEeCCCCCCeEeEEEEEECCEEEEEcCCCCCCceEEEECCCcEEEEccc-CCCCeeEEEECCccccccccccccc
Confidence            6899999986  599999999999999999998888899999999888766644 34678999986554           


Q ss_pred             ---------ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         130 ---------DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       130 ---------~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                               +.|+|+|+|++++.+||++|+.+..
T Consensus        81 ~~~~~~~~~~~~~~~A~s~~e~~~Wi~al~~~~~  114 (125)
T cd01252          81 DGRVVEGNHSVYRISAANDEEMDEWIKSIKASIS  114 (125)
T ss_pred             cccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence                     6788999999999999999998875

Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01238 PH_Tec Tec pleckstrin homology (PH) domain

Probab=99.87  E-value=1.4e-21  Score=126.65  Aligned_cols=90  Identities=26%  Similarity=0.330  Sum_probs=73.8

Q ss_pred             cEEEEEEeccC-------CCceEEEEEEeCCeEEEEccCCCc--ccceEEEccCeEEEEccCC-C------CceeEEEEE
Q psy2209          62 QHSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQ-D------NFKYVFQLK  125 (156)
Q Consensus        62 ~~~G~L~k~~~-------k~Wk~r~~vL~~~~L~~yk~~~~~--~~~~~i~L~~~~~~~~~~~-~------~~~~~f~i~  125 (156)
                      +++|||.|++.       +.|++|||||+++.|+||+++.+.  .+.|.|+|.++..+..... .      .+.++|+|.
T Consensus         1 ~k~g~l~Kr~~~~~~~~~~nwKkRwFvL~~~~L~Yyk~~~~~~~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~   80 (106)
T cd01238           1 ILESILVKRSQQKKKTSPLNYKERLFVLTKSKLSYYEGDFEKRGSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVV   80 (106)
T ss_pred             CcceeeeeeccCCCCCCCCCceeEEEEEcCCEEEEECCCcccccCcceeEECCcceEEEEecCCcCcccccccCccEEEE
Confidence            36899999862       389999999999999999997763  6899999998876653221 1      246899998


Q ss_pred             eCCCccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         126 HQGQDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       126 ~~~~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                       +..++||++|+|++++++||++|+.+
T Consensus        81 -t~~r~~yl~A~s~~er~~WI~ai~~~  106 (106)
T cd01238          81 -HDEGTLYVFAPTEELRKRWIKALKQV  106 (106)
T ss_pred             -eCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence             56678999999999999999999863

Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis

>cd01264 PH_melted Melted pleckstrin homology (PH) domain

Probab=99.87  E-value=2.1e-21  Score=123.65  Aligned_cols=90  Identities=19%  Similarity=0.337  Sum_probs=76.2

Q ss_pred             EEEEEEeccC-----CCceEEEEEEeCCeEEEEccCCCcccc-eEEEccCeEEEEccCCC----CceeEEEEEeCCCccE
Q psy2209          63 HSGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASEDIKAL-LSIPVLGYELEALNEQD----NFKYVFQLKHQGQDPL  132 (156)
Q Consensus        63 ~~G~L~k~~~-----k~Wk~r~~vL~~~~L~~yk~~~~~~~~-~~i~L~~~~~~~~~~~~----~~~~~f~i~~~~~~~~  132 (156)
                      .+|||.++++     |.|++|||+|+++.|+||+......+. +.|+|..+..+...+..    .++++|.|. +..++|
T Consensus         2 ~~G~l~k~~g~~r~~K~WkrRwF~L~~~~L~y~K~~~~~~~~~g~IdL~~~~sVk~~~~~~~~~~~~~~Fei~-tp~rt~   80 (101)
T cd01264           2 IEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDPDDCSIDLSKIRSVKAVAKKRRDRSLPKAFEIF-TADKTY   80 (101)
T ss_pred             cceEEeecCccceeeecceeEEEEEeCCEEEEEeccCccCCCCceEEcccceEEeeccccccccccCcEEEEE-cCCceE
Confidence            5899999887     499999999999999999987666665 99999998876654332    235999998 777999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHH
Q psy2209         133 VFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       133 ~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      +|+|+|++++++||++|..|.
T Consensus        81 ~l~A~se~e~e~WI~~i~~a~  101 (101)
T cd01264          81 ILKAKDEKNAEEWLQCLNIAV  101 (101)
T ss_pred             EEEeCCHHHHHHHHHHHHhhC
Confidence            999999999999999998773

Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain

Probab=99.87  E-value=2.9e-21  Score=121.77  Aligned_cols=86  Identities=23%  Similarity=0.280  Sum_probs=73.4

Q ss_pred             EEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCc--ccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCC
Q psy2209          63 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  138 (156)
Q Consensus        63 ~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~--~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s  138 (156)
                      .+|||.|.+.  +.|++|||||.++.|+||+++.+.  .+.|.|+|.++.+...+   ..++.|.|..++.++|+|.|+|
T Consensus         1 ~~G~L~K~~~~~k~Wk~RwFvL~~g~L~Yyk~~~~~~~~~~G~I~L~~~~i~~~~---~~~~~F~i~~~~~r~~~L~A~s   77 (91)
T cd01247           1 TNGVLSKWTNYINGWQDRYFVLKEGNLSYYKSEAEKSHGCRGSIFLKKAIIAAHE---FDENRFDISVNENVVWYLRAEN   77 (91)
T ss_pred             CceEEEEeccccCCCceEEEEEECCEEEEEecCccCcCCCcEEEECcccEEEcCC---CCCCEEEEEeCCCeEEEEEeCC
Confidence            3799999987  699999999999999999997764  46999999998766442   2357999975666999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2209         139 EQSYERWMKAMRE  151 (156)
Q Consensus       139 ~~~~~~Wi~al~~  151 (156)
                      +++++.||++|++
T Consensus        78 ~~e~~~Wi~al~~   90 (91)
T cd01247          78 SQSRLLWMDSVVR   90 (91)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999975

Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt

>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain

Probab=99.87  E-value=3.8e-21  Score=122.95  Aligned_cols=88  Identities=19%  Similarity=0.348  Sum_probs=75.4

Q ss_pred             CcEEEEEEeccCCCceEEEEEEeCC------eEEEEccCCC-----cccceEEEccCeEEEEccCCCCceeEEEEEeCCC
Q psy2209          61 SQHSGWLHKKSGRNWKRYWFVLKDQ------VMYKYKASED-----IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ  129 (156)
Q Consensus        61 ~~~~G~L~k~~~k~Wk~r~~vL~~~------~L~~yk~~~~-----~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~  129 (156)
                      +.++|||.|+  +.|++|||||+++      .|.||+++..     ..|.+.|+|.+|..+.......++++|.|. +.+
T Consensus         2 v~k~GyL~K~--K~~kkRwFVLr~~~~~~p~~Leyyk~ek~~~~~~~~p~~vI~L~~c~~v~~~~d~k~~~~f~i~-t~d   78 (101)
T cd01257           2 VRKSGYLRKQ--KSMHKRFFVLRAESSGGPARLEYYENEKKFLQKGSAPKRVIPLESCFNINKRADAKHRHLIALY-TRD   78 (101)
T ss_pred             ccEEEEEeEe--cCcEeEEEEEecCCCCCCceEEEECChhhccccCCCceEEEEccceEEEeeccccccCeEEEEE-eCC
Confidence            6799999997  8999999999877      7999999865     668999999999877644334456999998 555


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHH
Q psy2209         130 DPLVFGADNEQSYERWMKAMRE  151 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~  151 (156)
                      ++|+|+|+|++++++|+.+|..
T Consensus        79 r~f~l~aese~E~~~Wi~~i~~  100 (101)
T cd01257          79 EYFAVAAENEAEQDSWYQALLE  100 (101)
T ss_pred             ceEEEEeCCHHHHHHHHHHHhh
Confidence            8999999999999999999964

Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.

>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain

Probab=99.87  E-value=6.4e-21  Score=122.58  Aligned_cols=89  Identities=26%  Similarity=0.438  Sum_probs=74.4

Q ss_pred             EEEEEEeccC--CCceEEEEEEe--CCeEEEEccCCCcccceEEEccCeEEEEcc-CC------CCceeEEEEEeCCCcc
Q psy2209          63 HSGWLHKKSG--RNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEALN-EQ------DNFKYVFQLKHQGQDP  131 (156)
Q Consensus        63 ~~G~L~k~~~--k~Wk~r~~vL~--~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~-~~------~~~~~~f~i~~~~~~~  131 (156)
                      ++|||.|+++  +.|++|||||.  ++.|+||+++.+..+.|.|+|..++.+... +.      ....+.|.|. +..++
T Consensus         1 ~~G~L~K~g~~~k~WkkRwFvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~v~~~~~~~~~~~~~~~~~~f~i~-t~~r~   79 (101)
T cd01235           1 CEGYLYKRGALLKGWKPRWFVLDPDKHQLRYYDDFEDTAEKGCIDLAEVKSVNLAQPGMGAPKHTSRKGFFDLK-TSKRT   79 (101)
T ss_pred             CeEEEEEcCCCCCCccceEEEEECCCCEEEEecCCCCCccceEEEcceeEEEeecCCCCCCCCCCCCceEEEEE-eCCce
Confidence            4799999987  59999999998  459999999988999999999987665531 11      1234788887 67889


Q ss_pred             EEEEcCCHHHHHHHHHHHHHH
Q psy2209         132 LVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       132 ~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      |+|+|++.+++.+||.+|+.+
T Consensus        80 ~~~~a~s~~e~~~Wi~ai~~~  100 (101)
T cd01235          80 YNFLAENINEAQRWKEKIQQC  100 (101)
T ss_pred             EEEECCCHHHHHHHHHHHHhh
Confidence            999999999999999999876

Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .

>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain

Probab=99.84  E-value=3.6e-20  Score=120.53  Aligned_cols=88  Identities=25%  Similarity=0.396  Sum_probs=73.2

Q ss_pred             EEEEEeccC------CCceEEEEEEeCCe-------EEEEccCCCcccceEEEccCeEEEEcc-----CCCCceeEEEEE
Q psy2209          64 SGWLHKKSG------RNWKRYWFVLKDQV-------MYKYKASEDIKALLSIPVLGYELEALN-----EQDNFKYVFQLK  125 (156)
Q Consensus        64 ~G~L~k~~~------k~Wk~r~~vL~~~~-------L~~yk~~~~~~~~~~i~L~~~~~~~~~-----~~~~~~~~f~i~  125 (156)
                      +|||.|+++      +.|++|||||.++.       |+||+++.+..+.|.|+|..+..+...     ......+.|.|.
T Consensus         2 eGwL~K~~~~~~~~~~~WkrRwFvL~~~~l~~~~~~L~Yyk~~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~~~~~f~i~   81 (108)
T cd01266           2 EGWLKKSPPYKLLFRTKWVRRYFVLHCGDRERNLFALEYYKTSRKFKLEFVIDLESCSQVDPGLLCTAGNCIFGYGFDIE   81 (108)
T ss_pred             ceeeeeCCccccccccCcEEEEEEEeccccCCCcceEEEECCCCCCccceEEECCccEEEcccccccccCcccceEEEEE
Confidence            799999876      39999999999876       599999988999999999987665331     112234789998


Q ss_pred             eCCCccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         126 HQGQDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       126 ~~~~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                       +..++|+|+|+|++++.+||.+|++.
T Consensus        82 -t~~r~y~l~A~s~ee~~~Wi~~I~~~  107 (108)
T cd01266          82 -TIVRDLYLVAKNEEEMTLWVNCICKL  107 (108)
T ss_pred             -eCCccEEEEECCHHHHHHHHHHHHhh
Confidence             66789999999999999999999875

Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str

>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain

Probab=99.84  E-value=8.3e-20  Score=114.96  Aligned_cols=87  Identities=26%  Similarity=0.548  Sum_probs=75.3

Q ss_pred             EEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCc--ccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCC
Q psy2209          63 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  138 (156)
Q Consensus        63 ~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~--~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s  138 (156)
                      ++|||.|+++  +.|++|||+|.++.|+||+++.+.  .+.+.|+|.++.+....   ..+++|.|..++++.++|+|+|
T Consensus         1 ~~G~L~k~~~~~~~W~~r~~vl~~~~L~~~~~~~~~~~~~~~~i~l~~~~~~~~~---~~~~~F~i~~~~~~~~~~~a~s   77 (91)
T cd01246           1 VEGWLLKWTNYLKGWQKRWFVLDNGLLSYYKNKSSMRGKPRGTILLSGAVISEDD---SDDKCFTIDTGGDKTLHLRANS   77 (91)
T ss_pred             CeEEEEEecccCCCceeeEEEEECCEEEEEecCccCCCCceEEEEeceEEEEECC---CCCcEEEEEcCCCCEEEEECCC
Confidence            4799999875  599999999999999999998877  78999999988765432   2368999986666899999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy2209         139 EQSYERWMKAMREA  152 (156)
Q Consensus       139 ~~~~~~Wi~al~~a  152 (156)
                      .+++..||.+|+.|
T Consensus        78 ~~e~~~Wi~al~~a   91 (91)
T cd01246          78 EEERQRWVDALELA   91 (91)
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999875

Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain

Probab=99.83  E-value=7.3e-20  Score=117.49  Aligned_cols=88  Identities=15%  Similarity=0.287  Sum_probs=70.9

Q ss_pred             EEEEEEeccC-----------CCceEEEEEEe-CCeEEEEccC-CCcccceEEEccCeEEEEccC-CCCceeEEEEEeCC
Q psy2209          63 HSGWLHKKSG-----------RNWKRYWFVLK-DQVMYKYKAS-EDIKALLSIPVLGYELEALNE-QDNFKYVFQLKHQG  128 (156)
Q Consensus        63 ~~G~L~k~~~-----------k~Wk~r~~vL~-~~~L~~yk~~-~~~~~~~~i~L~~~~~~~~~~-~~~~~~~f~i~~~~  128 (156)
                      ++|||.+.++           |.|++|||||. ++.|+||++. .+..++|.|+|..+..+...+ ...++++|.|. +.
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~K~WkrRWFvL~~~~~L~y~~d~~~~~~p~G~IdL~~~~~V~~~~~~~~~~~~f~I~-tp   79 (104)
T cd01236           1 YCGWLLVAPDGTDFDNPVHRSKRWQRRWFILYDHGLLTYALDEMPTTLPQGTIDMNQCTDVVDAEARTGQKFSICIL-TP   79 (104)
T ss_pred             CcceeEEcCCCCcccccceeeccccceEEEEeCCCEEEEeeCCCCCcccceEEEccceEEEeecccccCCccEEEEE-CC
Confidence            4799999753           48999999997 5788887665 467889999998877665433 23346899998 77


Q ss_pred             CccEEEEcCCHHHHHHHHHHHHH
Q psy2209         129 QDPLVFGADNEQSYERWMKAMRE  151 (156)
Q Consensus       129 ~~~~~~~a~s~~~~~~Wi~al~~  151 (156)
                      +++|+|.|+|++|+++||.+|..
T Consensus        80 ~R~f~l~Aete~E~~~Wi~~l~~  102 (104)
T cd01236          80 DKEHFIKAETKEEISWWLNMLMV  102 (104)
T ss_pred             CceEEEEeCCHHHHHHHHHHHHh
Confidence            79999999999999999999963

Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain

Probab=99.82  E-value=3.1e-19  Score=112.99  Aligned_cols=89  Identities=25%  Similarity=0.503  Sum_probs=74.6

Q ss_pred             EEEEEEeccC---CCceEEEEEEeCCeEEEEccCCC--cccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcC
Q psy2209          63 HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD  137 (156)
Q Consensus        63 ~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~--~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~  137 (156)
                      ++|||.++++   +.|++|||+|.++.|+||+++.+  ..+.+.|+|..+.+....+...++++|+|.. ..+.|+|+|+
T Consensus         1 k~G~L~kk~~~~~~~W~kr~~~L~~~~l~~y~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~-~~~~~~f~a~   79 (94)
T cd01250           1 KQGYLYKRSSKSNKEWKKRWFVLKNGQLTYHHRLKDYDNAHVKEIDLRRCTVRHNGKQPDRRFCFEVIS-PTKTWHFQAD   79 (94)
T ss_pred             CcceEEEECCCcCCCceEEEEEEeCCeEEEEcCCcccccccceEEeccceEEecCccccCCceEEEEEc-CCcEEEEECC
Confidence            4799999864   48999999999999999998776  5568899998887766655433679999984 4489999999


Q ss_pred             CHHHHHHHHHHHHHH
Q psy2209         138 NEQSYERWMKAMREA  152 (156)
Q Consensus       138 s~~~~~~Wi~al~~a  152 (156)
                      |.+++..|+.||+.+
T Consensus        80 s~~~~~~Wi~al~~~   94 (94)
T cd01250          80 SEEERDDWISAIQES   94 (94)
T ss_pred             CHHHHHHHHHHHhcC
Confidence            999999999999753

Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain

Probab=99.82  E-value=1.3e-19  Score=115.01  Aligned_cols=87  Identities=15%  Similarity=0.240  Sum_probs=74.8

Q ss_pred             EEEEEeccC---CCceEEEEEEeC----CeEEEEccCCCcccceEEEccCeEEEEccCC-CCceeEEEEEeCCC-ccEEE
Q psy2209          64 SGWLHKKSG---RNWKRYWFVLKD----QVMYKYKASEDIKALLSIPVLGYELEALNEQ-DNFKYVFQLKHQGQ-DPLVF  134 (156)
Q Consensus        64 ~G~L~k~~~---k~Wk~r~~vL~~----~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~-~~~~~~f~i~~~~~-~~~~~  134 (156)
                      .|||.|+++   |.|++|||+|.+    ..|+||+.+.+.+|.|.|+|.++.+..+.+. .++++||+|..+.. .+|++
T Consensus         2 ~G~l~K~g~~~~K~wK~rwF~l~~~~s~~~l~yf~~~~~~~p~gli~l~~~~V~~v~ds~~~r~~cFel~~~~~~~~y~~   81 (98)
T cd01245           2 KGNLLKRTKSVTKLWKTLYFALILDGSRSHESLLSSPKKTKPIGLIDLSDAYLYPVHDSLFGRPNCFQIVERALPTVYYS   81 (98)
T ss_pred             CCccccCCCCcccccceeEEEEecCCCCceEEEEcCCCCCCccceeeccccEEEEccccccCCCeEEEEecCCCCeEEEE
Confidence            589998876   589999999987    9999999999999999999999977766544 35789999985554 58899


Q ss_pred             EcCCHHHHHHHHHHHHH
Q psy2209         135 GADNEQSYERWMKAMRE  151 (156)
Q Consensus       135 ~a~s~~~~~~Wi~al~~  151 (156)
                      +|++ +++++||.+|++
T Consensus        82 ~a~~-~er~~Wi~~l~~   97 (98)
T cd01245          82 CRSS-EERDKWIESLQA   97 (98)
T ss_pred             eCCH-HHHHHHHHHHhc
Confidence            9999 999999999975

RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]

Probab=99.80  E-value=2.5e-18  Score=109.78  Aligned_cols=92  Identities=32%  Similarity=0.599  Sum_probs=81.8

Q ss_pred             cEEEEEEecc--CCCceEEEEEEeCCeEEEEccCC---CcccceEEEccCeEEEEccCC-----CCceeEEEEEeCCCcc
Q psy2209          62 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASE---DIKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQGQDP  131 (156)
Q Consensus        62 ~~~G~L~k~~--~k~Wk~r~~vL~~~~L~~yk~~~---~~~~~~~i~L~~~~~~~~~~~-----~~~~~~f~i~~~~~~~  131 (156)
                      .++|||.+++  .+.|++|||+|.++.|+||+++.   ...+.+.|+|.++.+....+.     ...+++|.|..++++.
T Consensus         2 ~~~G~L~~~~~~~~~wk~r~~vL~~~~L~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~~f~i~~~~~~~   81 (104)
T PF00169_consen    2 IKEGWLLKKSSSRKKWKKRYFVLRDSYLLYYKSSKDKSDSKPKGSIPLDDCTVRPDPSSDFLSNKKRKNCFEITTPNGKS   81 (104)
T ss_dssp             EEEEEEEEEESSSSSEEEEEEEEETTEEEEESSTTTTTESSESEEEEGTTEEEEEETSSTSTSTSSSSSEEEEEETTSEE
T ss_pred             EEEEEEEEECCCCCCeEEEEEEEECCEEEEEecCccccceeeeEEEEecCceEEEcCccccccccCCCcEEEEEeCCCcE
Confidence            5899999998  36999999999999999999988   567899999999988876655     3567999999888779


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHH
Q psy2209         132 LVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       132 ~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ++|+|+|++++..|+.+|+.|+
T Consensus        82 ~~~~~~s~~~~~~W~~~i~~~~  103 (104)
T PF00169_consen   82 YLFSAESEEERKRWIQAIQKAI  103 (104)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999886

The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....

>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain

Probab=99.80  E-value=1.9e-18  Score=113.19  Aligned_cols=92  Identities=17%  Similarity=0.337  Sum_probs=79.4

Q ss_pred             EEEEEEecc------------CCCceEEEEEEeCCeEEEEccCCC-------cccceEEEccCeEEEEccCCCCceeEEE
Q psy2209          63 HSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASED-------IKALLSIPVLGYELEALNEQDNFKYVFQ  123 (156)
Q Consensus        63 ~~G~L~k~~------------~k~Wk~r~~vL~~~~L~~yk~~~~-------~~~~~~i~L~~~~~~~~~~~~~~~~~f~  123 (156)
                      ++|+|.+|-            .+.|+++||||.|+.|++|+++..       ......|.|.++.+.+..+..+++++|.
T Consensus         2 ~~g~l~RK~~~~~~~kk~~~~~R~Wk~~y~vL~g~~L~~yKDe~~~~~~~~~~~~~~~Isi~~a~~~ia~dy~Kr~~VF~   81 (117)
T cd01230           2 KHGALMRKVHADPDCRKTPFGKRSWKMFYGILRGLVLYLQKDEHKPGKSLSETELKNAISIHHALATRASDYSKKPHVFR   81 (117)
T ss_pred             CCcEEEEEEEecCCCccCCCCCCcceEEEEEEECCEEEEEccCcccccccccccccceEEeccceeEeeccccCCCcEEE
Confidence            578888762            248999999999999999999864       2336789999999888888888999999


Q ss_pred             EEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         124 LKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       124 i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |..++++.|+|+|.+.++|+.||.+|+.++.
T Consensus        82 L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~~  112 (117)
T cd01230          82 LRTADWREFLFQTSSLKELQSWIERINVVAA  112 (117)
T ss_pred             EEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            9988889999999999999999999998764

EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01241 PH_Akt Akt pleckstrin homology (PH) domain

Probab=99.79  E-value=3e-18  Score=110.33  Aligned_cols=92  Identities=20%  Similarity=0.446  Sum_probs=66.8

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEe-CCeEEEEccCCCcccceEEEccCeEEEEc---cCCCCceeEEEEEeCC-C--cc
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEAL---NEQDNFKYVFQLKHQG-Q--DP  131 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~-~~~L~~yk~~~~~~~~~~i~L~~~~~~~~---~~~~~~~~~f~i~~~~-~--~~  131 (156)
                      ++++|||.|+++  +.|++|||+|. ++.|+||+++......+.++|.+..+...   .....+++.|.|...+ .  ..
T Consensus         1 v~k~G~L~K~g~~~~~Wk~R~f~L~~~~~l~~yk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~F~i~~~~~~~~~~   80 (102)
T cd01241           1 VVKEGWLHKRGEYIKTWRPRYFLLKSDGSFIGYKEKPEDGDPFLPPLNNFSVAECQLMKTERPRPNTFIIRCLQWTTVIE   80 (102)
T ss_pred             CcEEEEEEeecCCCCCCeeEEEEEeCCCeEEEEecCCCccCccccccCCeEEeeeeeeeccCCCcceEEEEeccCCcccC
Confidence            358999999987  69999999998 78899888765444456777777664221   1123356899997222 1  11


Q ss_pred             EEEEcCCHHHHHHHHHHHHHH
Q psy2209         132 LVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       132 ~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      -+|+|+|++++++||.||+.+
T Consensus        81 r~f~a~s~ee~~eWi~ai~~v  101 (102)
T cd01241          81 RTFHVESPEEREEWIHAIQTV  101 (102)
T ss_pred             EEEEeCCHHHHHHHHHHHHhh
Confidence            266799999999999999876

Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain

Probab=99.79  E-value=2.3e-18  Score=109.60  Aligned_cols=78  Identities=12%  Similarity=0.116  Sum_probs=65.8

Q ss_pred             CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCC--CCceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHH
Q psy2209          73 RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ--DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMR  150 (156)
Q Consensus        73 k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~--~~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~  150 (156)
                      +.|++|||+|++..|+||+++. ..+.|.|+|.....+...+.  ...+++|+|.+ ..++|||+|+|++|+++||.||+
T Consensus        19 ~n~KkRwF~Lt~~~L~Y~k~~~-~~~~g~I~L~~i~~ve~v~~~~~~~~~~fqivt-~~r~~yi~a~s~~E~~~Wi~al~   96 (98)
T cd01244          19 LHFKKRYFQLTTTHLSWAKDVQ-CKKSALIKLAAIKGTEPLSDKSFVNVDIITIVC-EDDTMQLQFEAPVEATDWLNALE   96 (98)
T ss_pred             cCCceeEEEECCCEEEEECCCC-CceeeeEEccceEEEEEcCCcccCCCceEEEEe-CCCeEEEECCCHHHHHHHHHHHh
Confidence            4899999999999999999865 57899999988877764332  23458999984 55799999999999999999998


Q ss_pred             HH
Q psy2209         151 EA  152 (156)
Q Consensus       151 ~a  152 (156)
                      ++
T Consensus        97 k~   98 (98)
T cd01244          97 KQ   98 (98)
T ss_pred             cC
Confidence            64

RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain

Probab=99.77  E-value=4.5e-18  Score=109.91  Aligned_cols=89  Identities=25%  Similarity=0.424  Sum_probs=71.8

Q ss_pred             EEEEEecc----------CCCceEEEEEEeCCeEEEEccCCCc--ccce--EEEccCeEEEEccCCCCceeEEEEEeCCC
Q psy2209          64 SGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASEDI--KALL--SIPVLGYELEALNEQDNFKYVFQLKHQGQ  129 (156)
Q Consensus        64 ~G~L~k~~----------~k~Wk~r~~vL~~~~L~~yk~~~~~--~~~~--~i~L~~~~~~~~~~~~~~~~~f~i~~~~~  129 (156)
                      +|+|.++.          .+.|++|||+|.++.|+||+++...  ...+  .|++.++.+....+..+++++|.|..+++
T Consensus         2 ~g~l~rk~~~~~~g~~~~~~~Wk~r~~vL~~~~L~~ykd~~~~~~~~~~~~~i~l~~~~i~~~~~~~k~~~~F~l~~~~~   81 (104)
T cd01253           2 EGSLERKHELESGGKKASNRSWDNVYGVLCGQSLSFYKDEKMAAENVHGEPPVDLTGAQCEVASDYTKKKHVFRLRLPDG   81 (104)
T ss_pred             CceEeEEEEeecCCcccCCCCcceEEEEEeCCEEEEEecCcccccCCCCCCcEeccCCEEEecCCcccCceEEEEEecCC
Confidence            57777542          1489999999999999999987644  2233  67777777777666556779999987888


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         130 DPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      +.|+|+|+|++++..|+.+|+.+
T Consensus        82 ~~~~f~a~s~e~~~~Wi~aL~~~  104 (104)
T cd01253          82 AEFLFQAPDEEEMSSWVRALKSA  104 (104)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC
Confidence            99999999999999999999753

Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain

Probab=99.73  E-value=2.4e-17  Score=108.51  Aligned_cols=91  Identities=15%  Similarity=0.240  Sum_probs=71.5

Q ss_pred             cEEEEEEecc----CCCceEEEEEEeCCeEEEEccCCC---cccceEEEccCeEEEEcc----CCCCceeEEEEEe--CC
Q psy2209          62 QHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALN----EQDNFKYVFQLKH--QG  128 (156)
Q Consensus        62 ~~~G~L~k~~----~k~Wk~r~~vL~~~~L~~yk~~~~---~~~~~~i~L~~~~~~~~~----~~~~~~~~f~i~~--~~  128 (156)
                      .+.|||....    -+.|++|||+|.|+.|+||+.+.+   ..|.|.|+|.++......    +...+++.|.|..  +.
T Consensus         2 ~~~GfL~~~q~~~~~k~W~RRWFvL~g~~L~y~k~p~d~~~~~Plg~I~L~~c~~~~v~~~~r~~c~Rp~tF~i~~~~~~   81 (122)
T cd01263           2 EYHGFLTMFEDTSGFGAWHRRWCALEGGEIKYWKYPDDEKRKGPTGLIDLSTCTSSEGASAVRDICARPNTFHLDVWRPK   81 (122)
T ss_pred             ccceeEEEEeccCCCCCceEEEEEEeCCEEEEEcCCCccccCCceEEEEhhhCcccccccCChhhcCCCCeEEEEEeccc
Confidence            4789999732    269999999999999999997766   567999999998876653    2344778898852  11


Q ss_pred             -----------------CccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         129 -----------------QDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       129 -----------------~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                                       ..-++|+|+|.+++.+|+.+|+.|
T Consensus        82 ~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain~~  122 (122)
T cd01263          82 METDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLNST  122 (122)
T ss_pred             ccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHhcC
Confidence                             112689999999999999999864

Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0930|consensus

Probab=99.73  E-value=2.4e-17  Score=120.28  Aligned_cols=93  Identities=24%  Similarity=0.556  Sum_probs=80.5

Q ss_pred             CcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeC----------
Q psy2209          61 SQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQ----------  127 (156)
Q Consensus        61 ~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~----------  127 (156)
                      +..+|||.|.++   +.||+|||+|.+++||||....|.+|.|.|+|.+..+..+. .+.+|+||.|+.+          
T Consensus       260 pdREGWLlKlgg~rvktWKrRWFiLtdNCLYYFe~tTDKEPrGIIpLeNlsir~Ve-dP~kP~cfEly~ps~~gq~IKAC  338 (395)
T KOG0930|consen  260 PDREGWLLKLGGNRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVE-DPKKPNCFELYIPSNKGQVIKAC  338 (395)
T ss_pred             ccccceeeeecCCcccchhheeEEeecceeeeeeeccCCCCCcceeccccceeecc-CCCCCCeEEEecCCCCcCeeeee
Confidence            568999999986   49999999999999999999999999999999998887774 4558999999742          


Q ss_pred             -----------CCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         128 -----------GQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       128 -----------~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                                 .+.+|.++|.+.+++.+||.+|+.+..
T Consensus       339 KTe~DGRvVEG~H~vYrIsA~~~Ee~~~Wi~sI~a~is  376 (395)
T KOG0930|consen  339 KTEADGRVVEGNHSVYRISAPTPEEKDEWIKSIKAAIS  376 (395)
T ss_pred             cccCCceeEeccceEEEeeCCCHHHHHHHHHHHHHHhc
Confidence                       235788999999999999999987653

>PF15409 PH_8: Pleckstrin homology domain

Probab=99.71  E-value=1.4e-16  Score=98.76  Aligned_cols=83  Identities=25%  Similarity=0.473  Sum_probs=71.4

Q ss_pred             EEEEeccC---CCceEEEEEE--eCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCCH
Q psy2209          65 GWLHKKSG---RNWKRYWFVL--KDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNE  139 (156)
Q Consensus        65 G~L~k~~~---k~Wk~r~~vL--~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~  139 (156)
                      |||.|+.+   ++|++|||+|  ..+.|.||+++.+....|.|+|..+.+....    ....|.|. ++..+|+|.|.|+
T Consensus         1 G~llKkrr~~lqG~~kRyFvL~~~~G~LsYy~~~~~~~~rGsi~v~~a~is~~~----~~~~I~id-sg~~i~hLKa~s~   75 (89)
T PF15409_consen    1 GWLLKKRRKPLQGWHKRYFVLDFEKGTLSYYRNQNSGKLRGSIDVSLAVISANK----KSRRIDID-SGDEIWHLKAKSQ   75 (89)
T ss_pred             CcceeeccccCCCceeEEEEEEcCCcEEEEEecCCCCeeEeEEEccceEEEecC----CCCEEEEE-cCCeEEEEEcCCH
Confidence            78887754   5999999999  8999999999888777999999888665542    23589997 8889999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2209         140 QSYERWMKAMREA  152 (156)
Q Consensus       140 ~~~~~Wi~al~~a  152 (156)
                      ++.+.|++||+.|
T Consensus        76 ~~f~~Wv~aL~~a   88 (89)
T PF15409_consen   76 EDFQRWVSALQKA   88 (89)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999999976

>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A

Probab=99.71  E-value=3.6e-16  Score=103.30  Aligned_cols=91  Identities=27%  Similarity=0.449  Sum_probs=68.4

Q ss_pred             EEEEEEecc------------CCCceEEEEEEeCCeEEEEccCCC--------------cccceEEEccCeEEEEccCCC
Q psy2209          63 HSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASED--------------IKALLSIPVLGYELEALNEQD  116 (156)
Q Consensus        63 ~~G~L~k~~------------~k~Wk~r~~vL~~~~L~~yk~~~~--------------~~~~~~i~L~~~~~~~~~~~~  116 (156)
                      ++|+|.+|.            .+.|+..|+||+|+.|++|++...              ..+...|+|.++.+....+..
T Consensus         2 keG~l~RK~~~~~~gkk~~~~~R~Wk~~y~vL~g~~L~~~k~~~~~~~~~~~~~~~~~~~~p~~~i~L~~a~a~~a~dY~   81 (119)
T PF15410_consen    2 KEGILMRKHELESGGKKASRSKRSWKQVYAVLQGGQLYFYKDEKSPASSTPPDIQSVENAKPDSSISLHHALAEIASDYT   81 (119)
T ss_dssp             -EEEEEEEEEEECTTCC---S---EEEEEEEEETTEEEEESSHHHHCCT-BS---SS--E-----EE-TT-EEEEETTBT
T ss_pred             ceEEEEEEEEEcCCCCCcCCCCCCccEEeEEEECCEEEEEccCcccccCCcccccccccCcceeEEEecceEEEeCcccc
Confidence            689998862            148999999999999999998421              123456999999999988888


Q ss_pred             CceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         117 NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       117 ~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      +++++|.|...++..|+|+|.|.++|.+||++|+.++
T Consensus        82 Kr~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~~A  118 (119)
T PF15410_consen   82 KRKNVFRLRTADGSEYLFQASDEEEMNEWIDAINYAA  118 (119)
T ss_dssp             TCSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHHH-
T ss_pred             cCCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhhhc
Confidence            8999999998888899999999999999999999775

>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain

Probab=99.67  E-value=1.1e-15  Score=97.24  Aligned_cols=82  Identities=28%  Similarity=0.564  Sum_probs=65.0

Q ss_pred             CCceEEEEEEeCCeEEEEccCCCccc--ceEEEccCeEEEEccCCCCceeEEEEEe---CCCccEEEEcCCHHHHHHHHH
Q psy2209          73 RNWKRYWFVLKDQVMYKYKASEDIKA--LLSIPVLGYELEALNEQDNFKYVFQLKH---QGQDPLVFGADNEQSYERWMK  147 (156)
Q Consensus        73 k~Wk~r~~vL~~~~L~~yk~~~~~~~--~~~i~L~~~~~~~~~~~~~~~~~f~i~~---~~~~~~~~~a~s~~~~~~Wi~  147 (156)
                      |.|++|||+|+|+.|+||++..+..+  ...+.+.++.+.....-..+++.|.+..   .+.+.|+|.|+|++++..||+
T Consensus        18 K~~KrrwF~lk~~~L~YyK~kee~~~~p~i~lnl~gcev~~dv~~~~~kf~I~l~~ps~~~~r~y~l~cdsEeqya~Wma   97 (106)
T cd01237          18 KGYKQYWFTFRDTSISYYKSKEDSNGAPIGQLNLKGCEVTPDVNVAQQKFHIKLLIPTAEGMNEVWLRCDNEKQYAKWMA   97 (106)
T ss_pred             hhheeEEEEEeCCEEEEEccchhcCCCCeEEEecCceEEcccccccccceEEEEecCCccCCeEEEEECCCHHHHHHHHH
Confidence            58999999999999999998776544  5566667777766543334568888873   244789999999999999999


Q ss_pred             HHHHHHh
Q psy2209         148 AMREATT  154 (156)
Q Consensus       148 al~~a~~  154 (156)
                      |++.|+.
T Consensus        98 a~rlas~  104 (106)
T cd01237          98 ACRLASK  104 (106)
T ss_pred             HHHHhhC
Confidence            9999874

Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01256 PH_dynamin Dynamin pleckstrin homology (PH) domain

Probab=99.64  E-value=5.3e-15  Score=91.86  Aligned_cols=92  Identities=23%  Similarity=0.409  Sum_probs=76.9

Q ss_pred             cEEEEEEeccC----CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCC-CCceeEEEEEeCCCc------
Q psy2209          62 QHSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ-DNFKYVFQLKHQGQD------  130 (156)
Q Consensus        62 ~~~G~L~k~~~----k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~-~~~~~~f~i~~~~~~------  130 (156)
                      +..|||....-    ++-|.|||||++.+|+||+++.+.++++.|+|.+..+..+++. ..++++|.|..++++      
T Consensus         2 irkgwl~~~n~~~m~ggsK~~WFVLt~~~L~wykd~eeKE~kyilpLdnLk~Rdve~gf~sk~~~FeLfnpd~rnvykd~   81 (110)
T cd01256           2 IRKGWLSISNVGIMKGGSKDYWFVLTSESLSWYKDDEEKEKKYMLPLDGLKLRDIEGGFMSRNHKFALFYPDGRNVYKDY   81 (110)
T ss_pred             eeeeeEEeeccceecCCCcceEEEEecceeeeecccccccccceeeccccEEEeecccccCCCcEEEEEcCcccccccch
Confidence            56899988653    3679999999999999999999999999999999988876542 457799999866544      


Q ss_pred             -cEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         131 -PLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       131 -~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                       .+-++|++++++..|.+.+-+|.
T Consensus        82 k~lel~~~~~e~vdswkasflrag  105 (110)
T cd01256          82 KQLELGCETLEEVDSWKASFLRAG  105 (110)
T ss_pred             heeeecCCCHHHHHHHHHHHHhcc
Confidence             45599999999999999886653

Dynamin pleckstrin homology (PH) domain. Dynamin is a GTPase that regulates endocytic vesicle formation. It has an N-terminal GTPase domain, followed by a PH domain, a GTPase effector domain and a C-terminal proline arginine rich domain. Dynamin-like proteins, which are found in metazoa, plants and yeast have the same domain architecture as dynamin, but lack the PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain

Probab=99.62  E-value=9.1e-15  Score=96.84  Aligned_cols=78  Identities=13%  Similarity=0.423  Sum_probs=64.8

Q ss_pred             CceEEEEEEeCCeEEEEccCCCcccceEEEcc-CeEEEEccCC-----------CCceeEEEEEeCCCccEEEEcCCHHH
Q psy2209          74 NWKRYWFVLKDQVMYKYKASEDIKALLSIPVL-GYELEALNEQ-----------DNFKYVFQLKHQGQDPLVFGADNEQS  141 (156)
Q Consensus        74 ~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~-~~~~~~~~~~-----------~~~~~~f~i~~~~~~~~~~~a~s~~~  141 (156)
                      .|++|||+|+++.|.||+++.+..+.+.|.+. +..+......           ....+.|.|. +..++|.|.|+|+.+
T Consensus        32 ~w~kRWFvlr~s~L~Y~~~~~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~-t~~R~~~l~a~s~~~  110 (121)
T cd01254          32 RWQKRWFIVKESFLAYMDDPSSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKIT-NSNRSLKLKCKSSRK  110 (121)
T ss_pred             CCcceeEEEeCCEEEEEcCCCCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEE-cCCcEEEEEeCCHHH
Confidence            69999999999999999999988899999883 3344332221           2456899997 888999999999999


Q ss_pred             HHHHHHHHHHH
Q psy2209         142 YERWMKAMREA  152 (156)
Q Consensus       142 ~~~Wi~al~~a  152 (156)
                      +.+|+++|+.|
T Consensus       111 ~~~Wi~~i~~a  121 (121)
T cd01254         111 LKQWMASIEDA  121 (121)
T ss_pred             HHHHHHHHHhC
Confidence            99999999875

Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>smart00233 PH Pleckstrin homology domain

Probab=99.62  E-value=3.7e-14  Score=89.31  Aligned_cols=92  Identities=30%  Similarity=0.584  Sum_probs=77.4

Q ss_pred             cEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCC---cccceEEEccCeEEEEccCCC--CceeEEEEEeCCCccEE
Q psy2209          62 QHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALNEQD--NFKYVFQLKHQGQDPLV  133 (156)
Q Consensus        62 ~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~---~~~~~~i~L~~~~~~~~~~~~--~~~~~f~i~~~~~~~~~  133 (156)
                      .++|||.++..   ..|+++||+|.++.|.+|+....   ..+.+.|+|.++.+....+..  ..+++|.|.......++
T Consensus         2 ~~~G~l~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~f~l~~~~~~~~~   81 (102)
T smart00233        2 IKEGWLYKKSGGKKKSWKKRYFVLFNSTLLYYKSEKAKKDYKPKGSIDLSGITVREAPDPDSAKKPHCFEIKTADRRSYL   81 (102)
T ss_pred             ceeEEEEEeCCCccCCceEEEEEEECCEEEEEeCCCccccCCCceEEECCcCEEEeCCCCccCCCceEEEEEecCCceEE
Confidence            58999999875   48999999999999999998765   456899999999776655442  35699999966655899


Q ss_pred             EEcCCHHHHHHHHHHHHHHH
Q psy2209         134 FGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       134 ~~a~s~~~~~~Wi~al~~a~  153 (156)
                      |+|+|.+++..|+.+|+.+.
T Consensus        82 f~~~s~~~~~~W~~~i~~~~  101 (102)
T smart00233       82 LQAESEEEREEWVDALRKAI  101 (102)
T ss_pred             EEcCCHHHHHHHHHHHHHhh
Confidence            99999999999999999875

Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.

>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain

Probab=99.61  E-value=2.9e-14  Score=91.02  Aligned_cols=92  Identities=23%  Similarity=0.377  Sum_probs=75.3

Q ss_pred             cEEEEEEeccCC-CceEEEEEEeCCeEEEEccCCCc---ccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcC
Q psy2209          62 QHSGWLHKKSGR-NWKRYWFVLKDQVMYKYKASEDI---KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD  137 (156)
Q Consensus        62 ~~~G~L~k~~~k-~Wk~r~~vL~~~~L~~yk~~~~~---~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~  137 (156)
                      +++|+|.|..++ .|.|+||.+.|..||+.+...+.   ...+.|+|.+..+....+....+++|+|. +..+.|.++|.
T Consensus         3 ikEG~L~K~~~k~~~~R~~FLFnD~LlY~~~~~~~~~~y~~~~~i~L~~~~V~~~~~~~~~~~~F~I~-~~~ks~~l~A~   81 (99)
T cd01220           3 IRQGCLLKLSKKGLQQRMFFLFSDLLLYTSKSPTDQNSFRILGHLPLRGMLTEESEHEWGVPHCFTIF-GGQCAITVAAS   81 (99)
T ss_pred             eeEEEEEEEeCCCCceEEEEEccceEEEEEeecCCCceEEEEEEEEcCceEEeeccCCcCCceeEEEE-cCCeEEEEECC
Confidence            589999998765 67777888888777777654333   35899999999987766654567999998 77788999999


Q ss_pred             CHHHHHHHHHHHHHHHh
Q psy2209         138 NEQSYERWMKAMREATT  154 (156)
Q Consensus       138 s~~~~~~Wi~al~~a~~  154 (156)
                      |++|+.+|+.+|+.|..
T Consensus        82 s~~Ek~~Wi~~i~~aI~   98 (99)
T cd01220          82 TRAEKEKWLADLSKAIA   98 (99)
T ss_pred             CHHHHHHHHHHHHHHhh
Confidence            99999999999998863

Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain

Probab=99.59  E-value=6.6e-14  Score=89.93  Aligned_cols=90  Identities=16%  Similarity=0.175  Sum_probs=73.4

Q ss_pred             cEEEEEEeccC--CCceEEEEEEeCCeEEEEccCC-----CcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEE
Q psy2209          62 QHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASE-----DIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF  134 (156)
Q Consensus        62 ~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~-----~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~  134 (156)
                      +++|||.|.++  +.|+.|||.|-++.|.|++...     .....+.|+|.+..+... +....++.|.|. ...++|++
T Consensus         3 ikeG~L~K~~~~~~~~k~RyffLFnd~Ll~~~~~~~~~~~~y~~~~~i~l~~~~v~~~-~~~~~~~~F~I~-~~~rsf~l   80 (101)
T cd01219           3 LKEGSVLKISSTTEKTEERYLFLFNDLLLYCVPRKMIGGSKFKVRARIDVSGMQVCEG-DNLERPHSFLVS-GKQRCLEL   80 (101)
T ss_pred             ccceEEEEEecCCCCceeEEEEEeCCEEEEEEcccccCCCcEEEEEEEecccEEEEeC-CCCCcCceEEEe-cCCcEEEE
Confidence            58999999886  4899999999888999998532     123367899999887654 234467999998 56689999


Q ss_pred             EcCCHHHHHHHHHHHHHHH
Q psy2209         135 GADNEQSYERWMKAMREAT  153 (156)
Q Consensus       135 ~a~s~~~~~~Wi~al~~a~  153 (156)
                      +|+|++++.+||++|+.|.
T Consensus        81 ~A~s~eEk~~W~~ai~~~i   99 (101)
T cd01219          81 QARTQKEKNDWVQAIFSII   99 (101)
T ss_pred             EcCCHHHHHHHHHHHHHHh
Confidence            9999999999999999885

FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C

Probab=99.57  E-value=1.6e-13  Score=89.65  Aligned_cols=89  Identities=21%  Similarity=0.369  Sum_probs=54.2

Q ss_pred             EEEEEEeccC---CCceEEEEEEe-CCeEEEEccCCCc-------------ccceEEEc----cCeEEEE--ccCCCCce
Q psy2209          63 HSGWLHKKSG---RNWKRYWFVLK-DQVMYKYKASEDI-------------KALLSIPV----LGYELEA--LNEQDNFK  119 (156)
Q Consensus        63 ~~G~L~k~~~---k~Wk~r~~vL~-~~~L~~yk~~~~~-------------~~~~~i~L----~~~~~~~--~~~~~~~~  119 (156)
                      ++|||+|++.   +.|++|||+|. ++.|.||+.+.+.             ...+.+..    .......  ........
T Consensus         1 k~G~l~K~~~~~~kgWk~RwFiL~k~~~L~YyK~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (112)
T PF15413_consen    1 KEGYLYKWGNKFGKGWKKRWFILRKDGVLSYYKIPRDKKDVRIIGEESSRVIRKGDWSISRRSSRIQGIKDKNPFGEIHL   80 (112)
T ss_dssp             EEEEEEE--TTS-S--EEEEEEEE-TTEEEEESS-------------TT-SB-SEEEE---GGGT-EEEES-T--SS-SS
T ss_pred             CCceEEEecCCCCcCccccEEEEEeCCEEEEeecccccccccccccchhceEeecccCcccccccccccccCCcccCcCC
Confidence            5899999875   58999999999 9999999993222             11222221    1111111  01111123


Q ss_pred             eEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       120 ~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      ..|.|. ++.++|+|.|++.+|+..|+.||++|
T Consensus        81 ~~~~i~-T~~kt~~l~~~t~~d~~~Wi~aL~~~  112 (112)
T PF15413_consen   81 KVFSIF-TPTKTFHLRCETREDRYDWIEALQEA  112 (112)
T ss_dssp             EEEEEE--SS-EEEEEESSHHHHHHHHHHHHH-
T ss_pred             CCcEEE-CCCcEEEEEECCHHHHHHHHHHHHhC
Confidence            678886 77889999999999999999999876

>cd00821 PH Pleckstrin homology (PH) domain

Probab=99.56  E-value=6e-14  Score=87.49  Aligned_cols=90  Identities=32%  Similarity=0.644  Sum_probs=75.9

Q ss_pred             EEEEEEeccC---CCceEEEEEEeCCeEEEEccCCC---cccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          63 HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        63 ~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~---~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      +.|||.++..   ..|+++||+|.++.|.+|+...+   ..+.+.|+|.+..+....+....+++|.|....++.++|+|
T Consensus         1 ~~G~l~~~~~~~~~~w~~~~~~L~~~~l~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~~~~   80 (96)
T cd00821           1 KEGYLLKKTGKLRKGWKRRWFVLFNDLLLYYKKKSSKKSYKPKGSIPLSGAEVEESPDDSGRKNCFEIRTPDGRSYLLQA   80 (96)
T ss_pred             CcchhhhhhChhhCCccEEEEEEECCEEEEEECCCCCcCCCCcceEEcCCCEEEECCCcCCCCcEEEEecCCCcEEEEEe
Confidence            3689988765   57999999999999999998766   56799999999777776555445799999965558999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy2209         137 DNEQSYERWMKAMREA  152 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a  152 (156)
                      +|.+++..|+.+|+.+
T Consensus        81 ~s~~~~~~W~~~l~~~   96 (96)
T cd00821          81 ESEEEREEWIEALQSA   96 (96)
T ss_pred             CCHHHHHHHHHHHhcC
Confidence            9999999999999864

Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01234 PH_CADPS CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain

Probab=99.55  E-value=1.7e-14  Score=90.37  Aligned_cols=93  Identities=27%  Similarity=0.489  Sum_probs=74.3

Q ss_pred             cEEEEEEeccC---CCceEEEEEEeCCeEEEEc----cCCCcccceEEEccCeEEEEccCCC----------CceeEEEE
Q psy2209          62 QHSGWLHKKSG---RNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPVLGYELEALNEQD----------NFKYVFQL  124 (156)
Q Consensus        62 ~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk----~~~~~~~~~~i~L~~~~~~~~~~~~----------~~~~~f~i  124 (156)
                      .++|||.+.|+   |.|++|||+|.+-.-|-|.    .++...|...+.|.|+++...+..+          +..+.|..
T Consensus         3 k~sGyL~k~Gg~~~KkWKKRwFvL~qvsQYtfamcsy~ekks~P~e~~qldGyTvDy~~~~~~~~~~~~~~~gg~~ff~a   82 (117)
T cd01234           3 KHCGYLYAIGKNVWKKWKKRFFVLVQVSQYTFAMCSYREKKAEPTEFIQLDGYTVDYMPESDPDPNSELSLQGGRHFFNA   82 (117)
T ss_pred             ceeEEEEeccchhhhhhheeEEEEEchhHHHHHHHhhhhhcCCchhheeecceEEeccCCCCCCcccccccccchhhhhe
Confidence            58999999998   5999999999965444332    3355678999999999998865444          34478888


Q ss_pred             EeCCCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         125 KHQGQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       125 ~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      . ..+....|+++++.++..||+||.+|+.-
T Consensus        83 v-kegd~~~fa~~de~~r~lwvqa~yratgq  112 (117)
T cd01234          83 V-KEGDELKFATDDENERHLWVQAMYRATGQ  112 (117)
T ss_pred             e-ccCcEEEEeccchHHHHHHHHHHHHHcCc
Confidence            7 56667999999999999999999999863

CADPS (Ca2+-dependent activator protein) Pleckstrin homology (PH) domain. CADPS is a calcium-dependent activator involved in secretion. It contains a central PH domain that binds to phosphoinositide 4,5 bisphosphate containing liposomes. However, membrane association may also be mediated by binding to phosphatidlyserine via general electrostatic interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd00900 PH-like Pleckstrin homology-like domain

Probab=99.49  E-value=9.7e-13  Score=82.50  Aligned_cols=89  Identities=28%  Similarity=0.535  Sum_probs=72.7

Q ss_pred             EEEEEeccC------CCceEEEEEEeCCeEEEEccCCCcccc-eEEEccCeEEEEccCCCCceeEEEEEeCC--CccEEE
Q psy2209          64 SGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKAL-LSIPVLGYELEALNEQDNFKYVFQLKHQG--QDPLVF  134 (156)
Q Consensus        64 ~G~L~k~~~------k~Wk~r~~vL~~~~L~~yk~~~~~~~~-~~i~L~~~~~~~~~~~~~~~~~f~i~~~~--~~~~~~  134 (156)
                      +|||.+++.      +.|+++||+|.++.|++|+.+.+.... +.+++.+..+....+..+.+++|.|....  .+.++|
T Consensus         2 ~g~l~~~~~~~~~~~~~w~~~~~~l~~~~l~~~~~~~~~~~~~~~~~l~~~~v~~~~~~~~~~~~F~i~~~~~~~~~~~~   81 (99)
T cd00900           2 EGYLLKLGSDDVSKGKRWKRRWFFLFDDGLLLYKSDDKKEIKPGSIPLSEISVEEDPDGSDDPNCFAIVTKDRGRRVFVF   81 (99)
T ss_pred             ccEEEEeCCCccccccCceeeEEEEECCEEEEEEcCCCCcCCCCEEEccceEEEECCCCCCCCceEEEECCCCCcEEEEE
Confidence            588887763      479999999999999999998776655 68899888855554433456899999654  789999


Q ss_pred             EcCCHHHHHHHHHHHHHH
Q psy2209         135 GADNEQSYERWMKAMREA  152 (156)
Q Consensus       135 ~a~s~~~~~~Wi~al~~a  152 (156)
                      +|+|.+++..|+.+|+.|
T Consensus        82 ~~~~~~~~~~W~~al~~~   99 (99)
T cd00900          82 QADSEEEAQEWVEALQQA   99 (99)
T ss_pred             EcCCHHHHHHHHHHHhcC
Confidence            999999999999999864

Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.

>KOG1090|consensus

Probab=99.20  E-value=8.7e-12  Score=104.04  Aligned_cols=94  Identities=26%  Similarity=0.372  Sum_probs=79.7

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEe--CCeEEEEccCCCcccceEEEccCeEEEE--ccCCCCceeEEEEEeCCCccE
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEA--LNEQDNFKYVFQLKHQGQDPL  132 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~--~~~L~~yk~~~~~~~~~~i~L~~~~~~~--~~~~~~~~~~f~i~~~~~~~~  132 (156)
                      .+...+|||+|+|.  |.|+.|||||.  ..+|+||.+-.+.+++|.|+|.....+.  .++..+.+..|.+. +..++|
T Consensus      1632 eNr~~eG~LyKrGA~lK~Wk~RwFVLd~~khqlrYYd~~edt~pkG~IdLaevesv~~~~~k~vdekgffdlk-tt~rvy 1710 (1732)
T KOG1090|consen 1632 ENRIPEGYLYKRGAKLKLWKPRWFVLDPDKHQLRYYDDFEDTKPKGCIDLAEVESVALIGPKTVDEKGFFDLK-TTNRVY 1710 (1732)
T ss_pred             cccCcccchhhcchhhcccccceeEecCCccceeeecccccccccchhhhhhhhhhcccCccccCccceeeee-hhhHHH
Confidence            44567999999997  69999999995  6899999999999999999997665543  33445567899997 888999


Q ss_pred             EEEcCCHHHHHHHHHHHHHHH
Q psy2209         133 VFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       133 ~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      .|+|.+...+++|++.|+.+.
T Consensus      1711 nf~a~nin~AqqWve~iqscl 1731 (1732)
T KOG1090|consen 1711 NFCAQNINLAQQWVECIQSCL 1731 (1732)
T ss_pred             HHHhccchHHHHHHHHHHHhh
Confidence            999999999999999998764

>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain

Probab=99.16  E-value=1.5e-09  Score=69.69  Aligned_cols=92  Identities=16%  Similarity=0.234  Sum_probs=74.3

Q ss_pred             cEEEEEEeccCCCceEEEEEEeCCeEEEEccC---CCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCC
Q psy2209          62 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKAS---EDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  138 (156)
Q Consensus        62 ~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~---~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s  138 (156)
                      +++|-|.|..++.-+.|+|.|=.+.|.|-+--   +.-...+.++|.+..+....+....++.|+|. +..+++.++|+|
T Consensus         5 i~eG~L~K~~rk~~~~R~ffLFnD~LvY~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~~~~n~f~I~-~~~kSf~v~A~s   83 (104)
T cd01218           5 VGEGVLTKMCRKKPKQRQFFLFNDILVYGNIVISKKKYNKQHILPLEGVQVESIEDDGIERNGWIIK-TPTKSFAVYAAT   83 (104)
T ss_pred             EecCcEEEeecCCCceEEEEEecCEEEEEEeecCCceeeEeeEEEccceEEEecCCcccccceEEEe-cCCeEEEEEcCC
Confidence            47899999888888888999988888885421   11233678999999888776655567999998 677899999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy2209         139 EQSYERWMKAMREATT  154 (156)
Q Consensus       139 ~~~~~~Wi~al~~a~~  154 (156)
                      +++..+|+++|..|..
T Consensus        84 ~~eK~eWl~~i~~ai~   99 (104)
T cd01218          84 ETEKREWMLHINKCVT   99 (104)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998863

Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain

Probab=99.15  E-value=2.6e-10  Score=72.96  Aligned_cols=90  Identities=24%  Similarity=0.402  Sum_probs=62.5

Q ss_pred             EEEEEEecc--CCCceEEEEEEeCCeEEEEccCCCccc---ceEEEccCeEEEEccCCC-----CceeEEEEEeCC----
Q psy2209          63 HSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKA---LLSIPVLGYELEALNEQD-----NFKYVFQLKHQG----  128 (156)
Q Consensus        63 ~~G~L~k~~--~k~Wk~r~~vL~~~~L~~yk~~~~~~~---~~~i~L~~~~~~~~~~~~-----~~~~~f~i~~~~----  128 (156)
                      .+|+|+.+.  ++.|+++||+|+..-|||+-.....++   .....+.+..+-......     ..+++|.|.++.    
T Consensus         2 ~~g~LylK~~gkKsWKk~~f~LR~SGLYy~~Kgksk~srdL~cl~~f~~~nvY~~~~~kKk~kAPTd~~F~~K~~~~q~~   81 (114)
T cd01259           2 MEGPLYLKADGKKSWKKYYFVLRSSGLYYFPKEKTKNTRDLACLNLLHGHNVYTGLGWRKKYKSPTDYCFGFKAVGDQSK   81 (114)
T ss_pred             ccceEEEccCCCccceEEEEEEeCCeeEEccCCCcCCHHHHHHHHhcccCcEEEEechhhccCCCCCceEEEeccccCcc
Confidence            479999874  479999999999999998865444443   223344555443322111     124889987542    


Q ss_pred             --CccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         129 --QDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       129 --~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                        ...-+|+|++++.+..|+.|||-+
T Consensus        82 ~s~~ik~lCaeDe~t~~~W~ta~Ri~  107 (114)
T cd01259          82 GSQSIKYLCAEDLPTLDRWLTAIRIA  107 (114)
T ss_pred             cchhheeeccCCHHHHHHHHHHHHHH
Confidence              234589999999999999999865

Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0932|consensus

Probab=99.14  E-value=1.3e-11  Score=97.86  Aligned_cols=103  Identities=21%  Similarity=0.376  Sum_probs=78.7

Q ss_pred             hhhhhccCC-CCcEEEEEEecc------------CCCceEEEEEEeCCeEEEEccCCCcc-------cceEEEccCeEEE
Q psy2209          51 LIEVTANDS-GSQHSGWLHKKS------------GRNWKRYWFVLKDQVMYKYKASEDIK-------ALLSIPVLGYELE  110 (156)
Q Consensus        51 ~~~~~~~~~-~~~~~G~L~k~~------------~k~Wk~r~~vL~~~~L~~yk~~~~~~-------~~~~i~L~~~~~~  110 (156)
                      ..+++.++. ...+.|+|.+|.            +++||..|.+|+|..||+-+++-...       ....|.+....+.
T Consensus       495 fldv~~dpsa~~Yk~G~L~RK~had~DgkKTPrGkRgWk~fya~LkG~vLYlqkDey~p~kalse~~lknavsvHHALAt  574 (774)
T KOG0932|consen  495 FLDVPPDPSAATYKSGFLARKYHADMDGKKTPRGKRGWKMFYAVLKGMVLYLQKDEYKPGKALSESDLKNAVSVHHALAT  574 (774)
T ss_pred             cccCCCCCCchhhhhhhhhhhhhccccCCcCCccchhHHHHHHHHhhheEEeeccccCcccchhhhhhhhhhhhhhhhcC
Confidence            334444433 345899998862            24899999999999999988652211       1445555666666


Q ss_pred             EccCCCCceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         111 ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       111 ~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ...+..+++++|.|...+.++|+|||.+.++|+.||..|+-++
T Consensus       575 ~AtdY~KKp~Vf~lrtAdwrv~LFQaps~eEmqsWi~rIN~vA  617 (774)
T KOG0932|consen  575 PATDYSKKPHVFKLRTADWRVFLFQAPSQEEMQSWIERINLVA  617 (774)
T ss_pred             CCcccccCCceEEEEeccceeEEEeCCCHHHHHHHHHHHHHHH
Confidence            6778888899999999999999999999999999999998654

>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain

Probab=99.13  E-value=2.3e-09  Score=68.55  Aligned_cols=89  Identities=15%  Similarity=0.358  Sum_probs=66.5

Q ss_pred             EEEEEEecc------CCCceEEEEEEeCCeEEEEccCCCc---ccceEEEccCeEEE--E-------ccCCCCceeEEEE
Q psy2209          63 HSGWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDI---KALLSIPVLGYELE--A-------LNEQDNFKYVFQL  124 (156)
Q Consensus        63 ~~G~L~k~~------~k~Wk~r~~vL~~~~L~~yk~~~~~---~~~~~i~L~~~~~~--~-------~~~~~~~~~~f~i  124 (156)
                      ++|||....      +++|.+.|+||.+..|++|..+.+.   .+...+++.. ...  .       ..+..+.|+.|+|
T Consensus         2 lEGwlsvP~~~~~~~k~gW~r~yvVv~~~Kl~lYd~e~~~~~~~p~~vldl~~-~fhv~~V~asDVi~a~~kDiP~IF~I   80 (112)
T cd01242           2 MEGWLSLPNRTNKSRKPGWKKQYVVVSSRKILFYNDEQDKENSTPSMILDIDK-LFHVRPVTQGDVYRADAKEIPKIFQI   80 (112)
T ss_pred             cceeEEccCCCCccccCCceEEEEEEeCCEEEEEecCccccCCCcEEEEEccc-eeeeecccHHHeeecCcccCCeEEEE
Confidence            689997532      2489999999999999999987654   3456666643 222  1       1234457899999


Q ss_pred             EeCC-CccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         125 KHQG-QDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       125 ~~~~-~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      ...+ .+..+|-|+++.|.+.|+.+|.+-
T Consensus        81 ~~~~~~~~lllLA~s~~ek~kWV~~L~~~  109 (112)
T cd01242          81 LYANEARDLLLLAPQTDEQNKWVSRLVKK  109 (112)
T ss_pred             EeCCccceEEEEeCCchHHHHHHHHHHHh
Confidence            8543 478999999999999999999764

Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01239 PH_PKD Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain

Probab=99.10  E-value=1e-09  Score=70.50  Aligned_cols=89  Identities=16%  Similarity=0.360  Sum_probs=71.4

Q ss_pred             EEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCC-----CCceeEEEEEeCCCccEEEE
Q psy2209          63 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        63 ~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~-----~~~~~~f~i~~~~~~~~~~~  135 (156)
                      ++|||-....  +.|||+|+.|+...+.+|.++...+....|+|.....+.....     ...++||.|+ +...+||.+
T Consensus         2 kEGWmVHyT~~d~~rKRhYWrLDsK~Itlf~~e~~skyyKeIPLsEIl~V~~~~~~~~~~~~~~hcFEi~-T~~~vY~VG   80 (117)
T cd01239           2 KEGWMVHYTSSDNRRKKHYWRLDSKAITLYQEESGSRYYKEIPLAEILSVSSNNGDSVLAKHPPHCFEIR-TTTNVYFVG   80 (117)
T ss_pred             ccceEEEEecCccceeeeEEEecCCeEEEEEcCCCCeeeEEeehHHheEEeccCCCcCCCCCCCcEEEEE-ecCEEEEec
Confidence            6899987654  5899999999999999999999889999999988776653222     2356999999 677888886


Q ss_pred             cC--------------------CHHHHHHHHHHHHHH
Q psy2209         136 AD--------------------NEQSYERWMKAMREA  152 (156)
Q Consensus       136 a~--------------------s~~~~~~Wi~al~~a  152 (156)
                      .+                    ..+.++.|-.||++|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~sg~g~~~a~~We~aI~qA  117 (117)
T cd01239          81 GEDYHAFSGGPPKKIPPSDSGRGSDNAQSWETAIRQA  117 (117)
T ss_pred             ccccccCCCcccCCCCcccccchhHHHHHHHHHHhcC
Confidence            64                    234668999999976

Protein kinase D (PKD/PKCmu) pleckstrin homology (PH) domain. PKD consists of 2 C1 domains, followed by a PH domain and a kinase domain. While the PKD PH domain has not been shown to bind phosphorylated inositol lipids and is not required for membrane translocation, it is required for nuclear export. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2059|consensus

Probab=99.07  E-value=3e-10  Score=92.10  Aligned_cols=93  Identities=22%  Similarity=0.357  Sum_probs=76.5

Q ss_pred             CcEEEEEEeccC-------CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEE--ccCCCCceeEEEEEeCCCcc
Q psy2209          61 SQHSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA--LNEQDNFKYVFQLKHQGQDP  131 (156)
Q Consensus        61 ~~~~G~L~k~~~-------k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~--~~~~~~~~~~f~i~~~~~~~  131 (156)
                      +.+.|.|.++..       +++|+|||.|+...|.|.|+++.. +.+.|+|.+..++.  .+...+.+++|+|.+++ ++
T Consensus       565 v~k~glm~kr~~gr~~~~~~~FKKryf~LT~~~Ls~~Ksp~~q-~~~~Ipl~nI~avEklee~sF~~knv~qVV~~d-rt  642 (800)
T KOG2059|consen  565 VLKEGLMIKRAQGRGRFGKKNFKKRYFRLTTEELSYAKSPGKQ-PIYTIPLSNIRAVEKLEEKSFKMKNVFQVVHTD-RT  642 (800)
T ss_pred             eecccceEeccccccchhhhhhhheEEEeccceeEEecCCccC-cccceeHHHHHHHHHhhhhccCCCceEEEEecC-cc
Confidence            446677766532       378999999999999999997654 69999999888766  33445678999999777 79


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         132 LVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       132 ~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      .|++|.+..|.++|+++|++++.+
T Consensus       643 ly~Q~~n~vEandWldaL~kvs~~  666 (800)
T KOG2059|consen  643 LYVQAKNCVEANDWLDALRKVSCC  666 (800)
T ss_pred             eeEecCCchHHHHHHHHHHHHhcc
Confidence            999999999999999999988764

>cd01243 PH_MRCK MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain

Probab=99.05  E-value=1e-08  Score=66.53  Aligned_cols=91  Identities=16%  Similarity=0.346  Sum_probs=66.1

Q ss_pred             cEEEEEEecc----CCCceEEEEEEeCCeEEEEccCCCcc------cceEEEccCe--EEEEc-------cCCCCceeEE
Q psy2209          62 QHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASEDIK------ALLSIPVLGY--ELEAL-------NEQDNFKYVF  122 (156)
Q Consensus        62 ~~~G~L~k~~----~k~Wk~r~~vL~~~~L~~yk~~~~~~------~~~~i~L~~~--~~~~~-------~~~~~~~~~f  122 (156)
                      .++|||....    +++|.++|+||.+..|++|..+.+..      +...+++.+.  .+..+       .+..+.|+.|
T Consensus         3 ~~EGwvkvP~~~~~krGW~r~~vVv~~~Kl~lYd~e~~k~~~p~~~~~~vLdlrD~~fsV~~VtasDvi~a~~kDiP~If   82 (122)
T cd01243           3 AYEGHVKIPKPGGVKKGWQRALVVVCDFKLFLYDIAEDRASQPSVVISQVLDMRDPEFSVSSVLESDVIHASKKDIPCIF   82 (122)
T ss_pred             cceeeEeccCCCCcccCceEEEEEEeCCEEEEEeCCccccCCccCceeEEEEcCCCCEEEEEecHHHccccCcccCCeEE
Confidence            4799997643    25999999999999999999766532      2355666322  22221       2334578999


Q ss_pred             EEEe------CCCccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         123 QLKH------QGQDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       123 ~i~~------~~~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      +|..      ....+.+|-|+|+.|.+.|+.+|..-
T Consensus        83 ~I~~~~~~~~~~~~~~~~lA~s~~eK~kWV~aL~~l  118 (122)
T cd01243          83 RVTTSQISASSSKCSTLMLADTEEEKSKWVGALSEL  118 (122)
T ss_pred             EEEEecccCCCCccEEEEEeCCchHHHHHHHHHHHH
Confidence            9973      13467899999999999999999764

MRCK (myotonic dystrophy-related Cdc42-binding kinase) pleckstrin homology (PH) domain. MRCK consists of a serine/threonine kinase domain, a cysteine rich (C1) region, a PH domain and a p21 binding motif. It has been shown to promote cytoskeletal reorganization, which affects many biological processes. The MRCK PH domain is responsible for its targeting to cell to cell junctions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain

Probab=99.05  E-value=2.6e-09  Score=67.97  Aligned_cols=87  Identities=11%  Similarity=0.342  Sum_probs=59.6

Q ss_pred             EEEEEEeccCC----CceEEEEEEeCC--eEEE--EccC------CCcccceEEEccCeEEEEccCCCCceeEEEEEeCC
Q psy2209          63 HSGWLHKKSGR----NWKRYWFVLKDQ--VMYK--YKAS------EDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG  128 (156)
Q Consensus        63 ~~G~L~k~~~k----~Wk~r~~vL~~~--~L~~--yk~~------~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~  128 (156)
                      ++|||+.+.++    .|.++||....+  .+-+  +...      ........|.|..|.+...+.. ++.+||+|....
T Consensus         1 k~GYLy~~~k~~~~~~Wvk~y~~~~~~~~~f~m~~~~q~s~~~~~g~v~~~e~~~l~sc~~r~~~~~-dRRFCFei~~~~   79 (104)
T cd01249           1 KEGYLYMQEKSKFGGSWTKYYCTYSKETRIFTMVPFNQKTKTDMKGAVAQDETLTLKSCSRRKTESI-DKRFCFDVEVEE   79 (104)
T ss_pred             CCceEEEEcCCCCCCeEEEEEEEEEcCCcEEEEEecccccccccCcccccceEEeeeeccccccCCc-cceeeEeeeecC
Confidence            47999998753    799999998653  3211  2221      1112244566777777666443 477999997433


Q ss_pred             -CccEEEEcCCHHHHHHHHHHHH
Q psy2209         129 -QDPLVFGADNEQSYERWMKAMR  150 (156)
Q Consensus       129 -~~~~~~~a~s~~~~~~Wi~al~  150 (156)
                       ..++.|||+++.++..||.|+.
T Consensus        80 ~~~~~~lQA~Se~~~~~Wi~A~d  102 (104)
T cd01249          80 KPGVITMQALSEKDRRLWIEAMD  102 (104)
T ss_pred             CCCeEEEEecCHHHHHHHHHhhc
Confidence             3479999999999999999974

Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG0690|consensus

Probab=98.92  E-value=1.6e-09  Score=81.97  Aligned_cols=94  Identities=19%  Similarity=0.420  Sum_probs=67.1

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEE-eCCeEEEEccCCCcc-----cceEEEccCeEEEEccCCCCceeEEEEEeCCCc
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVL-KDQVMYKYKASEDIK-----ALLSIPVLGYELEALNEQDNFKYVFQLKHQGQD  130 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL-~~~~L~~yk~~~~~~-----~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~  130 (156)
                      ..++++|||+|+|.  +.|+.|||+| .+|.|.-|+......     |.....+.+|..... + ..+|+.|.|+.-...
T Consensus        13 ~~vvkEgWlhKrGE~IknWRpRYF~l~~DG~~~Gyr~kP~~~~~~p~pLNnF~v~~cq~m~~-e-rPrPntFiiRcLQWT   90 (516)
T KOG0690|consen   13 EDVVKEGWLHKRGEHIKNWRPRYFLLFNDGTLLGYRSKPKEVQPTPEPLNNFMVRDCQTMKT-E-RPRPNTFIIRCLQWT   90 (516)
T ss_pred             hhhHHhhhHhhcchhhhcccceEEEEeeCCceEeeccCCccCCCCcccccchhhhhhhhhhc-c-CCCCceEEEEeeeee
Confidence            34679999999998  6999999998 688999998754332     233334444444333 2 236789988743322


Q ss_pred             ---cEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         131 ---PLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       131 ---~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                         .-.|.+++.++++.|+.||+.++.
T Consensus        91 TVIERTF~ves~~eRq~W~~AIq~vsn  117 (516)
T KOG0690|consen   91 TVIERTFYVESAEERQEWIEAIQAVSN  117 (516)
T ss_pred             eeeeeeeecCCHHHHHHHHHHHHHHhh
Confidence               236899999999999999998764

>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain

Probab=98.90  E-value=5.6e-08  Score=63.19  Aligned_cols=93  Identities=16%  Similarity=0.264  Sum_probs=72.4

Q ss_pred             cEEEEEEecc--CCCceEEEEEEeCCeEEEEccCCC-----------cccceEEEccCeEEEEccCCCCceeEEEEEeCC
Q psy2209          62 QHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASED-----------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQG  128 (156)
Q Consensus        62 ~~~G~L~k~~--~k~Wk~r~~vL~~~~L~~yk~~~~-----------~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~  128 (156)
                      +++|-|.+-.  .+..+.|+|-|=++.|.|.+....           -.-++.+++....+...++....++.|.|.+..
T Consensus         5 I~EG~L~ki~~~~~~~q~R~~FLFd~~Li~CK~~~~~~~~~g~~~~~y~~k~~~~l~~~~V~d~~d~~~~knaF~I~~~~   84 (112)
T cd01261           5 IMEGTLTRVGPSKKAKHERHVFLFDGLMVLCKSNHGQPRLPGASSAEYRLKEKFFMRKVDINDKPDSSEYKNAFEIILKD   84 (112)
T ss_pred             cccCcEEEEecccCCcceEEEEEecCeEEEEEeccCcccccccccceEEEEEEEeeeeeEEEEcCCCcccCceEEEEcCC
Confidence            5788888765  356788988888888888775332           112566888888887777766668999998545


Q ss_pred             CccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         129 QDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       129 ~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .+.+.|+|.|+++..+||++|..+..
T Consensus        85 ~~s~~l~Akt~eeK~~Wm~~l~~~~~  110 (112)
T cd01261          85 GNSVIFSAKNAEEKNNWMAALISVQT  110 (112)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHhc
Confidence            67899999999999999999988754

Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A

Probab=98.82  E-value=1e-07  Score=61.10  Aligned_cols=90  Identities=14%  Similarity=0.201  Sum_probs=62.6

Q ss_pred             CCCCcEEEEEEeccCCCceEEEEEEeCC-eEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          58 DSGSQHSGWLHKKSGRNWKRYWFVLKDQ-VMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~k~Wk~r~~vL~~~-~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      +..++++|++.|+.+=..++|+++|+++ .|+|+.. .....+|.|+++.........    ...|.|. +.+++|+|..
T Consensus        10 ge~Il~~g~v~K~kgl~~kkR~liLTd~PrL~Yvdp-~~~~~KGeI~~~~~l~v~~k~----~~~F~I~-tp~RtY~l~d   83 (104)
T PF14593_consen   10 GELILKQGYVKKRKGLFAKKRQLILTDGPRLFYVDP-KKMVLKGEIPWSKELSVEVKS----FKTFFIH-TPKRTYYLED   83 (104)
T ss_dssp             T--EEEEEEEEEEETTEEEEEEEEEETTTEEEEEET-TTTEEEEEE--STT-EEEECS----SSEEEEE-ETTEEEEEE-
T ss_pred             CCeEEEEEEEEEeeceEEEEEEEEEccCCEEEEEEC-CCCeECcEEecCCceEEEEcc----CCEEEEE-CCCcEEEEEC
Confidence            4457899999998766789999999988 6666665 445568999998654444422    2489998 5578899887


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q psy2209         137 DNEQSYERWMKAMREATT  154 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a~~  154 (156)
                       ....+..|+++|+.+..
T Consensus        84 -~~~~A~~W~~~I~~~~~  100 (104)
T PF14593_consen   84 -PEGNAQQWVEAIEEVKK  100 (104)
T ss_dssp             -TTS-HHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHH
Confidence             45557889999988653

>KOG3640|consensus

Probab=98.78  E-value=1.2e-08  Score=85.18  Aligned_cols=96  Identities=17%  Similarity=0.360  Sum_probs=74.3

Q ss_pred             CCCcEEEEEEeccC----CCceEEEEEEeCCeEEEEccCCCc---ccceEEEccCeEEEEccCC----CCceeEEEEEe-
Q psy2209          59 SGSQHSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDI---KALLSIPVLGYELEALNEQ----DNFKYVFQLKH-  126 (156)
Q Consensus        59 ~~~~~~G~L~k~~~----k~Wk~r~~vL~~~~L~~yk~~~~~---~~~~~i~L~~~~~~~~~~~----~~~~~~f~i~~-  126 (156)
                      ..+.+.|||+.-..    ..|.||||+|.++.+.|++.+.|.   .+.+.|+|..|+.....+.    ..+++.|.|.. 
T Consensus       988 idVEYrGFLtmfed~sgfGaWhRyWc~L~gg~I~fWk~PdDEkrK~Pig~IDLt~CTsq~ie~a~rdicar~ntFhie~~ 1067 (1116)
T KOG3640|consen  988 IDVEYRGFLTMFEDGSGFGAWHRYWCALHGGEIKFWKYPDDEKRKVPIGQIDLTKCTSQSIEEARRDICARPNTFHIEVW 1067 (1116)
T ss_pred             cceeeeeeeeeeeccCCCchhhhhhHHhcCCeeeeecCcchhcccCcceeeehhhhhccccccchhhhccCCceeEEEee
Confidence            34568899987542    479999999999999999977664   4689999999987765433    34678888871 


Q ss_pred             -----------CCCc-cEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         127 -----------QGQD-PLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       127 -----------~~~~-~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                                 -..+ ...|+|++.++++.|+.+|+.+..
T Consensus      1068 rPl~~Dqep~~ie~r~Rv~LaADTkeel~~Wls~iN~tL~ 1107 (1116)
T KOG3640|consen 1068 RPLEDDQEPLLIEKRLRVMLAADTKEELQSWLSAINDTLK 1107 (1116)
T ss_pred             cccccccCcchhhhcceeeeecccHHHHHHHHHHHHHHHH
Confidence                       1122 468999999999999999998753

>PLN00188 enhanced disease resistance protein (EDR2); Provisional

Probab=98.68  E-value=2.2e-07  Score=76.61  Aligned_cols=95  Identities=15%  Similarity=0.236  Sum_probs=70.3

Q ss_pred             CCcEEEEEEeccC-----CCceEEEEEEeCCeEEEEccC--CCcccceEEEccCeEEEEccCCCC----ceeEEEEEeC-
Q psy2209          60 GSQHSGWLHKKSG-----RNWKRYWFVLKDQVMYKYKAS--EDIKALLSIPVLGYELEALNEQDN----FKYVFQLKHQ-  127 (156)
Q Consensus        60 ~~~~~G~L~k~~~-----k~Wk~r~~vL~~~~L~~yk~~--~~~~~~~~i~L~~~~~~~~~~~~~----~~~~f~i~~~-  127 (156)
                      .+.++|||+..+.     ...++|||||.+..|.|||..  ....|.....+.+...+.......    --|+|.|+.. 
T Consensus         3 ~~~~eGW~y~~g~~kig~~~~~~Ry~vl~~~~~~~yK~~P~~~~~pirs~~id~~~rVed~Gr~~~~g~~~yvl~~Yn~~   82 (719)
T PLN00188          3 KVVYEGWMVRYGRRKIGRSYIHMRYFVLESRLLAYYKKKPQDNQVPIKTLLIDGNCRVEDRGLKTHHGHMVYVLSVYNKK   82 (719)
T ss_pred             cceEeeEEEEEcccccccccceeEEEEEecchhhhcccCCccccccceeeccCCCceEeecCceEEcCceEEEEEEecCC
Confidence            3569999999875     267999999999999999973  334566666666665555322111    1288888853 


Q ss_pred             -CCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         128 -GQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       128 -~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                       ..+...|.|.|.+|+..|+.||+.|..
T Consensus        83 ~~~~~~~~~a~~~eea~~W~~a~~~a~~  110 (719)
T PLN00188         83 EKYHRITMAAFNIQEALIWKEKIESVID  110 (719)
T ss_pred             CccccEEEecCCHHHHHHHHHHHHHHHh
Confidence             445789999999999999999998763

>KOG3751|consensus

Probab=98.63  E-value=1.3e-07  Score=74.93  Aligned_cols=95  Identities=20%  Similarity=0.302  Sum_probs=61.7

Q ss_pred             CCCCcEEEEEEecc--CCCceEEEEEEeCCeEEEEccCCCcccce---EEEccCeEEEEcc--CCC---CceeEEEEEeC
Q psy2209          58 DSGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALL---SIPVLGYELEALN--EQD---NFKYVFQLKHQ  127 (156)
Q Consensus        58 ~~~~~~~G~L~k~~--~k~Wk~r~~vL~~~~L~~yk~~~~~~~~~---~i~L~~~~~~~~~--~~~---~~~~~f~i~~~  127 (156)
                      ...+.+.|||+.|+  +|.||+.||||+...|||+-......+..   ..++.+..+....  .+.   ...++|.|..+
T Consensus       314 ~~~pei~GfL~~K~dgkKsWKk~yf~LR~SGLYys~K~tsk~~r~Lq~l~~~~~snVYt~i~~rKkyksPTd~~f~~K~~  393 (622)
T KOG3751|consen  314 SSPPEIQGFLYLKEDGKKSWKKHYFVLRRSGLYYSTKGTSKEPRHLQCLADLHSSNVYTGIGGRKKYKSPTDYGFCIKPN  393 (622)
T ss_pred             CCCccccceeeecccccccceeEEEEEecCcceEccCCCCCCchhhHHHHhcccCceEEeecchhccCCCCCceEEeeec
Confidence            34567899999875  47999999999999999986544433311   1223333332221  111   02367776643


Q ss_pred             CC----c-cEEEEcCCHHHHHHHHHHHHHH
Q psy2209         128 GQ----D-PLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       128 ~~----~-~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      +.    + .-+|+|+++..+..|+.|||-+
T Consensus       394 ~~~~~~r~lk~lCAEDe~t~~~WltAiRl~  423 (622)
T KOG3751|consen  394 KLRNKRRFLKMLCAEDEQTRTCWLTAIRLL  423 (622)
T ss_pred             cccCcccceeeeecccchhHHHHHHHHHHH
Confidence            22    2 3389999999999999999864

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=98.55  E-value=3.2e-07  Score=73.86  Aligned_cols=97  Identities=15%  Similarity=0.200  Sum_probs=67.2

Q ss_pred             CCCcEEEEEEeccC-CCceEEEEEEeCCeEEEEccCCC---cccceEEEc---cCeEEEEccCCCCceeEEEEEeCCCcc
Q psy2209          59 SGSQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASED---IKALLSIPV---LGYELEALNEQDNFKYVFQLKHQGQDP  131 (156)
Q Consensus        59 ~~~~~~G~L~k~~~-k~Wk~r~~vL~~~~L~~yk~~~~---~~~~~~i~L---~~~~~~~~~~~~~~~~~f~i~~~~~~~  131 (156)
                      ......||+.+.+. ..|++|||.+.++.+........   ......+.+   .++..+.......++++|.|....++.
T Consensus       375 sDv~~~G~l~k~~~~~~wk~ry~~l~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~pv~~~~~~~~~~~~~i~~~~~~~  454 (478)
T PTZ00267        375 SDVTHGGYLYKYSSDMRWKKRYFYIGNGQLRISLSENPENDGVAPKSVNLETVNDVFPVPEVYSQKHPNQLVLWFNNGQK  454 (478)
T ss_pred             CCcccceEEeccCCCcchhhheEEecCCceEEEeccccccCCCCCccccHHHhcccccccHHhcCCCCceEEEEecCCcE
Confidence            35678999999876 47999999998877777543221   111222223   232222111233467999998777788


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         132 LVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       132 ~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      ++|.+++++++.+||.+|+.|..+
T Consensus       455 ~~~~~~~~~~~~~W~~~~~~~~~~  478 (478)
T PTZ00267        455 IIAYAKTAEDRDQWISKFQRACGM  478 (478)
T ss_pred             EEEecCChHHHHHHHHHHHHHhCC
Confidence            999999999999999999998753

>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain

Probab=98.53  E-value=7.7e-06  Score=52.66  Aligned_cols=90  Identities=16%  Similarity=0.214  Sum_probs=68.6

Q ss_pred             cEEEEEEeccC-CCc-eEEEEEEeCCeEEEEccCCCcc----cceEEEccCeEEEEccCCCCc------eeEEEEEeCC-
Q psy2209          62 QHSGWLHKKSG-RNW-KRYWFVLKDQVMYKYKASEDIK----ALLSIPVLGYELEALNEQDNF------KYVFQLKHQG-  128 (156)
Q Consensus        62 ~~~G~L~k~~~-k~W-k~r~~vL~~~~L~~yk~~~~~~----~~~~i~L~~~~~~~~~~~~~~------~~~f~i~~~~-  128 (156)
                      +++|-|.+.+. +.| +.|++-|=++.|.|.|...-..    -++.|++..+.+...++....      .+.|.|.+.. 
T Consensus         3 i~~Gel~~~s~~~g~~q~R~~FLFD~~LI~CKkd~~r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~~~knafkl~~~~~   82 (109)
T cd01224           3 FLQGEATRQKQNKGWNSSRVLFLFDHQMVLCKKDLIRRDHLYYKGRIDLDRCEVVNIRDGKMFSSGHTIKNSLKIYSEST   82 (109)
T ss_pred             eEeeeEEEEecccCCcccEEEEEecceEEEEecccccCCcEEEEEEEEcccEEEEECCCCccccCCceeEEEEEEEEcCC
Confidence            57888887664 344 5778888888898888532222    288999999998887665332      5899998654 


Q ss_pred             CccEEEEcCCHHHHHHHHHHHHH
Q psy2209         129 QDPLVFGADNEQSYERWMKAMRE  151 (156)
Q Consensus       129 ~~~~~~~a~s~~~~~~Wi~al~~  151 (156)
                      +..|.|+|.|+++...|++||..
T Consensus        83 ~~~~~f~~Kt~e~K~~Wm~a~~~  105 (109)
T cd01224          83 DEWYLFSFKSAERKHRWLSAFAL  105 (109)
T ss_pred             CeEEEEEECCHHHHHHHHHHHHH
Confidence            56789999999999999999964

Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG0521|consensus

Probab=98.52  E-value=5.7e-08  Score=81.77  Aligned_cols=92  Identities=21%  Similarity=0.478  Sum_probs=76.3

Q ss_pred             CcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcC
Q psy2209          61 SQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD  137 (156)
Q Consensus        61 ~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~  137 (156)
                      ....|+|+++..   +.|.++||-..++.+.|+..-.+.......+|..+.+...++...+.+||+|. +..++|.|||+
T Consensus       274 ~~~~~~l~~k~~~~~~tw~r~~f~~q~~~l~~~~r~~~~~~~~~~dL~~csvk~~~~~~drr~CF~ii-S~tks~~lQAe  352 (785)
T KOG0521|consen  274 YRMEGYLRKKASNASKTWKRRWFSIQDGQLGYQHRGADAENVLIEDLRTCSVKPDAEQRDRRFCFEII-SPTKSYLLQAE  352 (785)
T ss_pred             hhhhhhhhhhcccchhhHHhhhhhhhccccccccccccccccccccchhccccCCcccccceeeEEEe-cCCcceEEecC
Confidence            346778877754   58999999999999999887665554777788888888877765688999998 58889999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy2209         138 NEQSYERWMKAMREAT  153 (156)
Q Consensus       138 s~~~~~~Wi~al~~a~  153 (156)
                      ++.+...||.+|+...
T Consensus       353 s~~d~~~Wi~~i~nsi  368 (785)
T KOG0521|consen  353 SEKDCQDWISALQNSI  368 (785)
T ss_pred             chhHHHHHHHHHHHHH
Confidence            9999999999998754

>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain

Probab=98.50  E-value=1e-06  Score=56.71  Aligned_cols=88  Identities=11%  Similarity=0.339  Sum_probs=61.9

Q ss_pred             EEEEEecc---C---CCceEEEEEEeCCeEEEEccCCCc-----ccceEEEcc--CeE-EEEccCCC---CceeEEEEEe
Q psy2209          64 SGWLHKKS---G---RNWKRYWFVLKDQVMYKYKASEDI-----KALLSIPVL--GYE-LEALNEQD---NFKYVFQLKH  126 (156)
Q Consensus        64 ~G~L~k~~---~---k~Wk~r~~vL~~~~L~~yk~~~~~-----~~~~~i~L~--~~~-~~~~~~~~---~~~~~f~i~~  126 (156)
                      -|||..+-   +   +.|+.+|++|++..|++|+..--.     .|....+|-  -.. +...+...   +++++|.+..
T Consensus         2 mGW~~E~~~~~~~~~~~wrP~F~aL~~~dl~ly~s~P~s~e~w~~p~~~y~L~~~atrvv~~~~~~~~~~~~~~~F~irt   81 (108)
T cd01258           2 IGWVNEQLSGDDESSQRWRPRFLALKGSEFLFFETPPLSVEDWSRPLYVYKLYDVATRLVKNSSTRRLNDQRDNCFLIRT   81 (108)
T ss_pred             ceecccccCCCCccccccceEEEEEcCCcEEEEeCCCCCHHHHhChhhhChhHHhhhheeccCCccCcCCCCceEEEEEc
Confidence            47887652   2   589999999999999999976442     233333332  111 11122222   4679999996


Q ss_pred             CCC-ccEEEEcCCHHHHHHHHHHHHH
Q psy2209         127 QGQ-DPLVFGADNEQSYERWMKAMRE  151 (156)
Q Consensus       127 ~~~-~~~~~~a~s~~~~~~Wi~al~~  151 (156)
                      ... ..++|..++..|+..|..+|..
T Consensus        82 g~~vesh~fsVEt~~dL~~W~raiv~  107 (108)
T cd01258          82 GTQVENHYLRVETHRDLASWERALVR  107 (108)
T ss_pred             CCceeeEEEEecCHHHHHHHHHHHhc
Confidence            666 7899999999999999999964

Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG3543|consensus

Probab=98.46  E-value=4.3e-08  Score=79.34  Aligned_cols=99  Identities=25%  Similarity=0.450  Sum_probs=76.8

Q ss_pred             ccCCCCcEEEEEEeccC---CCceEEEEEEeCCeEEEEc----cCCCcccceEEEccCeEEEEccCCCC---ceeEEEEE
Q psy2209          56 ANDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPVLGYELEALNEQDN---FKYVFQLK  125 (156)
Q Consensus        56 ~~~~~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk----~~~~~~~~~~i~L~~~~~~~~~~~~~---~~~~f~i~  125 (156)
                      ..+++..++|||+.-|.   |.|++|||||..-.-|-|.    .++...|...|.|.|+++...++.++   .++.|...
T Consensus       459 dkp~nmkhsgylyaig~nvwkrwkkrffvlvqvsqytfamcsyrekkaepqel~qldgytvdytdp~pglqgg~~ffnav  538 (1218)
T KOG3543|consen  459 DKPPNMKHSGYLYAIGRNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELIQLDGYTVDYTDPSPGLQGGKHFFNAV  538 (1218)
T ss_pred             cCCCccccceeehhhhhHHHHHhHhhEEEEEEhhhhhhHhhhhhhcccChHHHhhccCeeeccCCCCCccccchHHHHHh
Confidence            45667779999999886   5899999999764444332    22556678899999999988765543   34667766


Q ss_pred             eCCCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         126 HQGQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       126 ~~~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                       ..+.+..|+.+++.++.-|++|+.+|+.-
T Consensus       539 -kegdtvifasddeqdr~lwvqamyratgq  567 (1218)
T KOG3543|consen  539 -KEGDTVIFASDDEQDRHLWVQAMYRATGQ  567 (1218)
T ss_pred             -ccCceEEeccCchhhhhHHHHHHHHhhCC
Confidence             56677999999999999999999999864

>cd01225 PH_Cool_Pix Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain

Probab=98.42  E-value=3.9e-06  Score=53.87  Aligned_cols=80  Identities=18%  Similarity=0.317  Sum_probs=64.9

Q ss_pred             CceEEEEEEeCCeEEEEccCCCc---ccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHH
Q psy2209          74 NWKRYWFVLKDQVMYKYKASEDI---KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMR  150 (156)
Q Consensus        74 ~Wk~r~~vL~~~~L~~yk~~~~~---~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~  150 (156)
                      .=..||++|=+..|.+.......   .-.|.++|.+..+...++....++.|.|..+.-....+.|.+++|+.+|+..|+
T Consensus        27 e~~eRyLvLFp~~LlilS~s~r~sGf~yqGkLPL~~i~v~~lEd~e~~~~aFeI~G~li~~i~v~C~~~~e~~~Wl~hL~  106 (111)
T cd01225          27 EKRERYLVLFPNVLLMLSASPRMSGFIYQGKLPLTGIIVTRLEDTEALKNAFEISGPLIERIVVVCNNPQDAQEWVELLN  106 (111)
T ss_pred             ccceeEEEEcCceEEEEEcCCCccceEEeeeecccccEEechHhccCccceEEEeccCcCcEEEEeCCHHHHHHHHHHHH
Confidence            45678889988888887653322   228999999999988777777889999997776789999999999999999998


Q ss_pred             HHH
Q psy2209         151 EAT  153 (156)
Q Consensus       151 ~a~  153 (156)
                      +-+
T Consensus       107 ~~~  109 (111)
T cd01225         107 ANN  109 (111)
T ss_pred             hhc
Confidence            643

Cool (cloned out of library)/Pix (PAK-interactive exchange factor) pleckstrin homology (PH) domain. Cool/Pix contains an N-terminal SH3 domain followed by a RhoGEF (DH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1117|consensus

Probab=98.34  E-value=2.7e-06  Score=71.10  Aligned_cols=92  Identities=16%  Similarity=0.344  Sum_probs=75.0

Q ss_pred             CCcEEEEEEeccC------------CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEc--cCCC---CceeEE
Q psy2209          60 GSQHSGWLHKKSG------------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL--NEQD---NFKYVF  122 (156)
Q Consensus        60 ~~~~~G~L~k~~~------------k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~--~~~~---~~~~~f  122 (156)
                      ...++|+|++...            ....++||||-|+.|+||.++....|.+.|.+........  ++..   +-.|.|
T Consensus       491 s~~~~~fLyc~~sa~~kl~~drr~~Ee~nr~wcVlg~g~ls~fen~~S~tP~~lI~~~Eivclav~~pd~~pn~~~~f~f  570 (1186)
T KOG1117|consen  491 STFLCGFLYCAPSAASKLSSDRRLREETNRKWCVLGGGFLSYFENEKSTTPNGLININEIVCLAVHPPDTYPNTGFIFIF  570 (1186)
T ss_pred             cccccceeeechhhccCCCChhhhcccCCCceEEcCcchhhhhhhcCCCCCCceeeccceEEEeecCCCCCCCcCceeEE
Confidence            3557899998531            2578999999999999999999999999999976655443  2222   234899


Q ss_pred             EEEeCCCccEEEEcCCHHHHHHHHHHHHH
Q psy2209         123 QLKHQGQDPLVFGADNEQSYERWMKAMRE  151 (156)
Q Consensus       123 ~i~~~~~~~~~~~a~s~~~~~~Wi~al~~  151 (156)
                      .+..++++.|+|.+++.+++..|..+|-+
T Consensus       571 E~~l~~er~~~fgle~ad~l~~wt~aiaK  599 (1186)
T KOG1117|consen  571 EIYLPGERVFLFGLETADALRKWTEAIAK  599 (1186)
T ss_pred             EEeecccceEEeecccHHHHHHHHHHHHH
Confidence            99999999999999999999999998854

>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain

Probab=98.32  E-value=7.2e-07  Score=56.80  Aligned_cols=94  Identities=22%  Similarity=0.334  Sum_probs=67.2

Q ss_pred             CCcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEcc-CCCCceeEEEEEeCCCccEEEE
Q psy2209          60 GSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN-EQDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        60 ~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~-~~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      +++..||+.|.|+   ..|++|||-|-++.|-+|....+.. ...|.+.....+..+ ..-+...|+.|...++..+++.
T Consensus         2 DcIvhGyi~KLGGPFls~WQ~Ry~~LfPNRLE~~~~~~~~~-~eLi~M~~i~~V~~e~~~iK~~~CI~ik~k~~~k~vlt   80 (116)
T cd01240           2 DCIVHGYIKKLGGPFLSQWQTRYFKLYPNRLELYGESEANK-PELITMDQIEDVSVEFQQIKEENCILLKIRDEKKIVLT   80 (116)
T ss_pred             ceEEeeehhhhCCHHHHHHHHHHheeCcceeeecccccccC-CcEEEeehhhhcchhheeeccCceEEEEEcCCceEEEe
Confidence            4678999999987   4899999999999999975433322 333333332222211 1112347888887778889999


Q ss_pred             cCCHHHHHHHHHHHHHHHh
Q psy2209         136 ADNEQSYERWMKAMREATT  154 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~~  154 (156)
                      +++.-+..+|...|+.|-.
T Consensus        81 ~~d~i~l~qW~~elr~a~r   99 (116)
T cd01240          81 NSDEIELKQWKKELRDAHR   99 (116)
T ss_pred             cCCcHHHHHHHHHHHHHHH
Confidence            9999999999999987754

Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or

>KOG3531|consensus

Probab=98.27  E-value=1.7e-07  Score=77.78  Aligned_cols=91  Identities=33%  Similarity=0.722  Sum_probs=75.2

Q ss_pred             EEEEEEec--cCCCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCC--CceeEEEEEeCCCccEEEEcCC
Q psy2209          63 HSGWLHKK--SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD--NFKYVFQLKHQGQDPLVFGADN  138 (156)
Q Consensus        63 ~~G~L~k~--~~k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~--~~~~~f~i~~~~~~~~~~~a~s  138 (156)
                      .+|||.++  ...+|.+-|.|+..-.|++||+-+|..+...++|.|+.+.+..+.+  .+.++|.|.. ...+|+|.|++
T Consensus       926 Lsg~LlrkfknssgwqkLwvvft~fcl~fyKS~qD~~~laslPlLgysvs~P~~~d~i~K~~vfkl~f-k~hvyffraes 1004 (1036)
T KOG3531|consen  926 LSGYLLRKFKNSSGWQKLWVVFTNFCLFFYKSHQDSEPLASLPLLGYSVSIPAEPDPIQKDYVFKLKF-KSHVYFFRAES 1004 (1036)
T ss_pred             hhHHHHHHhhccccceeeeeeecceeeEeecccccccccccccccccccCCCCCCCCcchhheeeeeh-hhhHHHHhhhh
Confidence            45666543  2359999999999999999999999999999999999887743333  3559999984 55679999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy2209         139 EQSYERWMKAMREATT  154 (156)
Q Consensus       139 ~~~~~~Wi~al~~a~~  154 (156)
                      .-....|+..|+.++.
T Consensus      1005 ~yt~~rw~evi~~a~~ 1020 (1036)
T KOG3531|consen 1005 YYTFERWMEVITDAPS 1020 (1036)
T ss_pred             hhhhhhHHHHhhcCCc
Confidence            9999999999998764

>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain

Probab=98.26  E-value=1.9e-05  Score=48.86  Aligned_cols=86  Identities=16%  Similarity=0.144  Sum_probs=63.9

Q ss_pred             cEEEEEEeccCCCceEEEEEEeCCeEEEEccCCCcccceEEEccC-eEEEEccCCCCceeEEEEEeCCCccEEEEcCCHH
Q psy2209          62 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLG-YELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQ  140 (156)
Q Consensus        62 ~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~-~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~  140 (156)
                      .+.|.+.|+.+=.+++|-++|+++--.+|=++....-+|.|+++. ...+.. .   ....|.|. +.+++|+|. +-..
T Consensus         2 l~~g~v~Kr~glf~kkR~LiLTd~PrL~yvdp~~~~~KgeIp~s~~~l~v~~-~---~~~~F~I~-Tp~rty~le-D~~~   75 (89)
T cd01262           2 LKIGAVKKRKGLFAKKRQLILTNGPRLIYVDPVKKVVKGEIPWSDVELRVEV-K---NSSHFFVH-TPNKVYSFE-DPKG   75 (89)
T ss_pred             ceeeeeeehhccccceeeEEEecCceEEEEcCCcCeEEeEecccccceEEEE-e---cCccEEEE-CCCceEEEE-CCCC
Confidence            467888887765789999999876666666666677799999987 333222 1   22588886 778889995 5568


Q ss_pred             HHHHHHHHHHHHH
Q psy2209         141 SYERWMKAMREAT  153 (156)
Q Consensus       141 ~~~~Wi~al~~a~  153 (156)
                      .+..|+.+|..+.
T Consensus        76 ~a~~W~~~I~~~~   88 (89)
T cd01262          76 RASQWKKAIEDLQ   88 (89)
T ss_pred             CHHHHHHHHHHHh
Confidence            8899999998764

3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>PLN02866 phospholipase D

Probab=98.15  E-value=3.9e-05  Score=66.01  Aligned_cols=92  Identities=20%  Similarity=0.386  Sum_probs=68.9

Q ss_pred             CcEEEEEEec------c-C---------------CCceEEEEEEeCCeEEEEccCCCcccceEEEccC---------eEE
Q psy2209          61 SQHSGWLHKK------S-G---------------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLG---------YEL  109 (156)
Q Consensus        61 ~~~~G~L~k~------~-~---------------k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~---------~~~  109 (156)
                      -.++||+.|+      + .               ..|.++|++|+++.|.|.+++.+..+...+...-         ..+
T Consensus       182 K~~Eg~v~~r~~~~~~g~~~~~~~~~~~~~~~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~~~~~~~~~~~  261 (1068)
T PLN02866        182 KLKEGYVMVKHLPKIPKSDDSRGCFPCCCFSCCNDNWQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLPASNGNGEGQI  261 (1068)
T ss_pred             CcceeEEEEeccCCCCCCCccCCccccccCCeecCchheeEEEEeccEEEEEecCCCCceeEEEEEecccccccCCCcce
Confidence            4589999988      2 1               1599999999999999998888777766554431         111


Q ss_pred             EEcc---CCCCceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         110 EALN---EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       110 ~~~~---~~~~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ....   +....++.|.|. ++.+.+.|.|.|...+..|+.+|+.+.
T Consensus       262 ~~~~~~k~~~~~~~~~~i~-~~~r~l~l~~~s~~~~~~w~~ai~~~~  307 (1068)
T PLN02866        262 SLAKEIKERNPLRFGFKVT-CGNRSIRLRTKSSAKVKDWVAAINDAG  307 (1068)
T ss_pred             eecccccccCCCcceEEEe-cCceEEEEEECCHHHHHHHHHHHHHHH
Confidence            1111   112235899997 888899999999999999999999886

>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain

Probab=98.12  E-value=0.00013  Score=46.27  Aligned_cols=88  Identities=17%  Similarity=0.188  Sum_probs=59.7

Q ss_pred             cEEEEEEeccCCCceEEEEEEeCCeEEEEccCCCccc-ceEEEccCeEEEEccCCCCceeEEEEEeCC--CccEEEEcCC
Q psy2209          62 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKA-LLSIPVLGYELEALNEQDNFKYVFQLKHQG--QDPLVFGADN  138 (156)
Q Consensus        62 ~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~~~-~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~--~~~~~~~a~s  138 (156)
                      +++|.+...+.+  +.|++-|=+..|.+.+..++.-. +..|.+.+..+....+.  .++.|.|...+  .+.+.|+|.|
T Consensus         5 lleg~l~~~~~~--~eR~vFLFe~~ll~~K~~~~~y~~K~~i~~~~l~i~e~~~~--d~~~F~v~~~~~p~~~~~l~A~s   80 (97)
T cd01222           5 LLEGRFREHGGG--KPRLLFLFQTMLLIAKPRGDKYQFKAYIPCKNLMLVEHLPG--EPLCFRVIPFDDPKGALQLTARN   80 (97)
T ss_pred             eeeceEEeecCC--CceEEEEecccEEEEEecCCeeEEEEEEEecceEEecCCCC--CCcEEEEEecCCCceEEEEEecC
Confidence            467777654432  34665565566666665444322 66777777777665443  26899997442  2589999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy2209         139 EQSYERWMKAMREAT  153 (156)
Q Consensus       139 ~~~~~~Wi~al~~a~  153 (156)
                      .++.+.|+++|+.+.
T Consensus        81 ~e~K~~W~~~i~~~i   95 (97)
T cd01222          81 REEKRIWTQQLKRAM   95 (97)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999999875

Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain

Probab=98.03  E-value=0.00011  Score=46.61  Aligned_cols=78  Identities=13%  Similarity=0.267  Sum_probs=58.5

Q ss_pred             eEE-EEEEeCCeEEEEcc-CCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209          76 KRY-WFVLKDQVMYKYKA-SEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus        76 k~r-~~vL~~~~L~~yk~-~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      .+. .|.+.|..++-... .+.-.....++|.+..++-.++.+.-++.|.|. +..+++.++|++.++..+|++.|++|.
T Consensus        20 ~rv~~FLfND~Lvva~~~~~~ky~~~~~~~L~~i~V~ni~D~~~~kNafki~-t~~~s~i~qaes~~~K~eWl~~le~a~   98 (100)
T cd01226          20 QRVMLFLLNDRLIVGNINAAGKYVMESTYSLNSVAVVNVKDRENAKKVLKLL-IFPESRIYQCESARIKTEWFEELEQAK   98 (100)
T ss_pred             ceEEEEEeccEEEEEEecccceEEEEEEEehHHeEEEecCCCcCcCceEEEE-eCCccEEEEeCCHHHHHHHHHHHHHHh
Confidence            344 55555555554333 222334778899998888888877778999998 666779999999999999999999885


Q ss_pred             h
Q psy2209         154 T  154 (156)
Q Consensus       154 ~  154 (156)
                      .
T Consensus        99 ~   99 (100)
T cd01226          99 R   99 (100)
T ss_pred             c
Confidence            3

Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>KOG1739|consensus

Probab=98.03  E-value=6.7e-06  Score=64.90  Aligned_cols=86  Identities=19%  Similarity=0.345  Sum_probs=66.9

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCccc--ceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKA--LLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~--~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      ...+|+|.+...  ..|.-||++|..+.|.||+++.+...  .|.|.|....+...+..   ...|.|. .+..++++.+
T Consensus        24 ~e~~G~lskwtnyi~gwqdRyv~lk~g~Lsyykse~E~~hGcRgsi~l~ka~i~ahEfD---e~rfdIs-vn~nv~~lra   99 (611)
T KOG1739|consen   24 VERCGVLSKWTNYIHGWQDRYVVLKNGALSYYKSEDETEHGCRGSICLSKAVITAHEFD---ECRFDIS-VNDNVWYLRA   99 (611)
T ss_pred             hhhcceeeeeecccccccceEEEEcccchhhhhhhhhhhcccceeeEeccCCcccccch---hheeeeE-eccceeeehh
Confidence            346777766543  48999999999999999998765543  88888876655444322   2688898 5678899999


Q ss_pred             CCHHHHHHHHHHHH
Q psy2209         137 DNEQSYERWMKAMR  150 (156)
Q Consensus       137 ~s~~~~~~Wi~al~  150 (156)
                      .+.+..+.|+++|.
T Consensus       100 ~~~~hr~~w~d~L~  113 (611)
T KOG1739|consen  100 QDPDHRQQWIDALE  113 (611)
T ss_pred             cCcHHHHHHHHHHH
Confidence            99999999999985

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=97.94  E-value=4e-05  Score=62.21  Aligned_cols=96  Identities=19%  Similarity=0.333  Sum_probs=60.4

Q ss_pred             CCcEEEEEEeccCC-CceEEEEEEeCCeEEEEccCCCccc-----------------ceEE--EccCeEEEE-cc---CC
Q psy2209          60 GSQHSGWLHKKSGR-NWKRYWFVLKDQVMYKYKASEDIKA-----------------LLSI--PVLGYELEA-LN---EQ  115 (156)
Q Consensus        60 ~~~~~G~L~k~~~k-~Wk~r~~vL~~~~L~~yk~~~~~~~-----------------~~~i--~L~~~~~~~-~~---~~  115 (156)
                      ...+.|.+.+.+.. .|++||+++.+...--+....+..+                 ...|  ++...+-+. ++   ..
T Consensus       372 ~~~~~g~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (496)
T PTZ00283        372 LTLYEGIVKKQSSDLSWKRRYLCIRGELEKGETLTVDVAPKFKSLDLVLAVSKDTLEQQCISTPFSDLEDVFPVPSKYTG  451 (496)
T ss_pred             ceeeeeEEecccCCcccceeEEEEeeecccCceeecCCCccchhhhhhhhhhhhhhhhhcccCchhhhcccccccHHhhC
Confidence            35678898887653 8999999987421111111001111                 1111  222222211 21   11


Q ss_pred             CCceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         116 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       116 ~~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      ...+++|.+...+++.+.|+|.+.+++..||.+|+.+..+
T Consensus       452 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  491 (496)
T PTZ00283        452 SNAAHVFAVAFKTGRRLLFQARSDPERDAWMQKIQSVLGI  491 (496)
T ss_pred             CCCCcEEEEEecCCcEEEEecCCchhHHHHHHHHHHhcCC
Confidence            2257999999899999999999999999999999998754

>PF15406 PH_6: Pleckstrin homology domain

Probab=97.93  E-value=3.9e-05  Score=48.98  Aligned_cols=67  Identities=13%  Similarity=0.208  Sum_probs=45.7

Q ss_pred             EEEEeCCeEEEE-ccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHH
Q psy2209          79 WFVLKDQVMYKY-KASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMR  150 (156)
Q Consensus        79 ~~vL~~~~L~~y-k~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~  150 (156)
                      |..-+|.-|.+| +.++...|.|.|+|...+-...    ...+.|.+. ..+....|+|.+..+++.||.+|.
T Consensus        43 wAsqTGKGLLF~~K~~dka~P~GiinLadase~~~----~g~~kF~f~-~~G~khtF~A~s~aERD~Wv~~lk  110 (112)
T PF15406_consen   43 WASQTGKGLLFFSKAEDKASPSGIINLADASEPEK----DGSNKFHFK-IKGHKHTFEAASAAERDNWVAQLK  110 (112)
T ss_pred             hhhccCceEEEEeccccccCCcceEehhhcccccc----CCCceEEEE-eCCceeeeecCCHHHhccHHHHhh
Confidence            444455445554 4445567899999976554332    133456665 356679999999999999999986

>PF15408 PH_7: Pleckstrin homology domain

Probab=97.86  E-value=6.2e-06  Score=50.27  Aligned_cols=88  Identities=13%  Similarity=0.242  Sum_probs=60.5

Q ss_pred             EEEEEeccCCCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEE-----ccCCC--C-ceeEEEEEeCCCccEEEE
Q psy2209          64 SGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA-----LNEQD--N-FKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        64 ~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~-----~~~~~--~-~~~~f~i~~~~~~~~~~~  135 (156)
                      +|||++.....-++||.+|++..+.+|.++.... .....|....+..     ....+  + ..+.|-.+.++++-.-+.
T Consensus         1 EGYLY~~E~~si~rRF~~L~~K~~~~~~~KGG~~-L~sF~L~~s~~s~Pm~~~~~A~~N~Gi~A~G~L~~~~~~~~~~~F   79 (104)
T PF15408_consen    1 EGYLYRDEDSSIQRRFVMLRSKQFNMYEDKGGQY-LCSFQLSSSVVSHPMVNFSQAVPNLGINAFGFLMYSPSRRHVQCF   79 (104)
T ss_pred             CCeEEEeccchHHHHHHhhhhceeEEecccCCce-eeeeehhhhhhhcccccccccCCCCCeeEEEEEEecCCcchhhhh
Confidence            5899998877889999999999999998865443 3333332221111     10001  1 125666666677777888


Q ss_pred             cCCHHHHHHHHHHHHHH
Q psy2209         136 ADNEQSYERWMKAMREA  152 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a  152 (156)
                      |++.+.++.|++++++-
T Consensus        80 A~S~~~~~~Wi~~mN~~   96 (104)
T PF15408_consen   80 ASSKKVCQSWIQVMNSP   96 (104)
T ss_pred             hhHHHHHHHHHHHhcCh
Confidence            99999999999999753

>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis

Probab=97.80  E-value=0.00097  Score=44.19  Aligned_cols=89  Identities=16%  Similarity=0.202  Sum_probs=59.8

Q ss_pred             EEEEEEeccC-------CCceEEEEEEeC--CeEEEEccCCCcc-----cceEEEccCeEEEEccC-CC------CceeE
Q psy2209          63 HSGWLHKKSG-------RNWKRYWFVLKD--QVMYKYKASEDIK-----ALLSIPVLGYELEALNE-QD------NFKYV  121 (156)
Q Consensus        63 ~~G~L~k~~~-------k~Wk~r~~vL~~--~~L~~yk~~~~~~-----~~~~i~L~~~~~~~~~~-~~------~~~~~  121 (156)
                      ...||+|..+       +..++|||.|..  ..|++...+....     ..+.+.|.....+.... .+      ...++
T Consensus        11 ~G~~l~Ky~r~~~~~~~~~~h~R~fwv~~~~~~L~Ws~~~p~~~~~~~~~~~~i~I~~v~~V~~~~~~~~~~~~~~~~~s   90 (123)
T PF12814_consen   11 IGEWLYKYTRKGRSGISEKPHRRYFWVDPYTRTLYWSSSNPKSENPSESKAKSIRIESVTEVKDGNPSPPGLKKPDHNKS   90 (123)
T ss_pred             cccEEEEEcccccCccCCCcEEEEEEEeCCCCEEEecCCCCCccccccccccceEEeeeEEecCCCCCCccccccccceE
Confidence            3458888654       267899999975  6777766432111     13456666555544221 11      12367


Q ss_pred             EEEEeCCCccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         122 FQLKHQGQDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       122 f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      |.|. ++++++-|.|.+.++.+-|+++|+.-
T Consensus        91 i~i~-t~~R~L~l~a~s~~~~~~W~~aL~~L  120 (123)
T PF12814_consen   91 IIIV-TPDRSLDLTAPSRERHEIWFNALRYL  120 (123)
T ss_pred             EEEE-cCCeEEEEEeCCHHHHHHHHHHHHHH
Confidence            7777 78899999999999999999999854

During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex

>cd01231 PH_Lnk LNK-family Pleckstrin homology (PH) domain

Probab=97.77  E-value=0.00017  Score=45.46  Aligned_cols=79  Identities=22%  Similarity=0.376  Sum_probs=52.5

Q ss_pred             CCceEEEEEEe----CCeEEEEcc--CCCcccceEEEccCeEEE---EccCCCCceeEEEEEeCCCccEEEEcCCHHHHH
Q psy2209          73 RNWKRYWFVLK----DQVMYKYKA--SEDIKALLSIPVLGYELE---ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYE  143 (156)
Q Consensus        73 k~Wk~r~~vL~----~~~L~~yk~--~~~~~~~~~i~L~~~~~~---~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~~~~  143 (156)
                      ..|.+.-.+|.    |..|.+|-.  ++..+|+..+......-+   ...+-+++.+.|.|.-.+...|.|.|.+.++++
T Consensus        19 ~~WqkcRl~L~~~~gg~~le~~~~~pPKssrpk~~v~C~~I~EvR~tt~LEmPD~~nTFvLK~~~~~eyI~Ea~d~~q~~   98 (107)
T cd01231          19 ARWQRGRLVLRKAVGGYMLEFYLPLPPKSSKPKLQVACSSISEVRECTRLEMPDNLYTFVLKVDDNTDIIFEVGDEQQLN   98 (107)
T ss_pred             cccceeeEEEEecCCCceEEEEccCCCCCCCCccccchhhhhhhhhcccccccCcccEEEEEecCCceEEEEcCCHHHHH
Confidence            47887777774    345555554  566666555543221111   122333456899998777778999999999999


Q ss_pred             HHHHHHHH
Q psy2209         144 RWMKAMRE  151 (156)
Q Consensus       144 ~Wi~al~~  151 (156)
                      .|+..|+.
T Consensus        99 SWla~Ir~  106 (107)
T cd01231          99 SWLAELRY  106 (107)
T ss_pred             HHHHHHhc
Confidence            99999975

LNK-family Pleckstrin homology (PH) domain. The Lnk family of proteins consists of Lnk, APS and SH2B. They are adaptor proteins consisting of a PH domain and an SH2 domain, which mediates signaling through growth factor receptors. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. The lnk family PH domain is likely involved in targeting of the adaptor proteins to the plasma membrane.

>KOG1451|consensus

Probab=97.71  E-value=0.00011  Score=59.64  Aligned_cols=92  Identities=14%  Similarity=0.306  Sum_probs=63.0

Q ss_pred             CCCcEEEEEEeccC----CCceEEEEEEeCCeEEEEccCCC------cccceEEEccCeEEEEccCCCCceeEEEEEeCC
Q psy2209          59 SGSQHSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASED------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQG  128 (156)
Q Consensus        59 ~~~~~~G~L~k~~~----k~Wk~r~~vL~~~~L~~yk~~~~------~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~  128 (156)
                      ....++|||+.+.+    +.|-++||+.....-.+-..+.+      ..+...+-|..|..... +.-++.|||.+...+
T Consensus       263 ~p~t~eGYlY~QEK~~~g~sWvKyYC~Y~retk~~TMvp~~qk~g~k~g~~~~~~lKsC~RRkt-dSIdKRFCFDve~~e  341 (812)
T KOG1451|consen  263 TPSTKEGYLYMQEKSKIGKSWVKYYCVYSRETKIFTMVPANQKTGTKMGQTATFKLKSCSRRKT-DSIDKRFCFDVEVEE  341 (812)
T ss_pred             CCcccceeeeehhhhhccchhhhheeEeecccceEEEeecccCCCCcCCCcceEEehhhccCcc-cccccceeeeeeecc
Confidence            45679999999874    58999999986544333222222      22344555666655443 333466999998443


Q ss_pred             -CccEEEEcCCHHHHHHHHHHHHH
Q psy2209         129 -QDPLVFGADNEQSYERWMKAMRE  151 (156)
Q Consensus       129 -~~~~~~~a~s~~~~~~Wi~al~~  151 (156)
                       ..++.+||-++.++..||.|+.-
T Consensus       342 rpgviTmQALSE~drrlWmeAMDG  365 (812)
T KOG1451|consen  342 RPGVITMQALSEKDRRLWMEAMDG  365 (812)
T ss_pred             cCCeeehHhhhhhHHHHHHHHhcC
Confidence             35889999999999999999853

>KOG0248|consensus

Probab=97.69  E-value=2.2e-05  Score=64.40  Aligned_cols=89  Identities=19%  Similarity=0.352  Sum_probs=67.1

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCC--cccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~--~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      ..++||+.+.+.  +.|++||+|++.++..||+..++  ..+.+.+++........   ....+.|++. +....++|-+
T Consensus       249 ~ekSgy~~~~~s~~k~lkrr~~v~k~gqi~~y~~~~~~~~~p~s~~d~~s~~~~~~---~~~s~~fqli-~~t~~~~~~~  324 (936)
T KOG0248|consen  249 MEKSGYWTQLTSRIKSLKRRYVVFKNGQISFYRKHNNRDEEPASKIDIRSVTKLEQ---QGAAYAFQLI-TSTDKMNFMT  324 (936)
T ss_pred             hhcccchhcchHHHHHHHhHheeeccceEEEEEcCCCccccccCcccccccceeec---cchhHHhhhh-hhceeEEEec
Confidence            347888877765  48999999999999999997665  35677777744333222   1234789987 6667799999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy2209         137 DNEQSYERWMKAMREAT  153 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a~  153 (156)
                      ++..-..+|++.|..+.
T Consensus       325 ~s~~lt~dw~~iL~~~i  341 (936)
T KOG0248|consen  325 ESERTTHDWVTILSAAI  341 (936)
T ss_pred             cChhhhhhhHHHHHHHH
Confidence            99999999999987654

>KOG1117|consensus

Probab=97.56  E-value=2.5e-05  Score=65.55  Aligned_cols=89  Identities=20%  Similarity=0.303  Sum_probs=75.9

Q ss_pred             CCcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          60 GSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        60 ~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      .+++.|||.|...   ..+.+||..+.+..+.||.++++..+++.|++.....+...    ....|++. ++.+++.|.+
T Consensus        86 p~~~~gwldk~~pqg~~~~qkr~vkf~~~s~~yf~~~k~py~k~~i~va~is~v~~~----gd~kfevi-tn~r~fvfr~  160 (1186)
T KOG1117|consen   86 PVIKSGWLDKLSPQGEYPFQKRWVKFDGSSLEYFLSPKDPYSKGPIPVAAISAVRNF----GDNKFEVI-TNQRTFVFRQ  160 (1186)
T ss_pred             chhhcchhhccCcCcccccCccceecCCCCccccCCCCCCCCCCceeeehhhhhhhc----cCceEEEE-ecceEEEEec
Confidence            3679999999754   37899999999999999999999999999999776665442    33689998 7889999999


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy2209         137 DNEQSYERWMKAMREAT  153 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a~  153 (156)
                      ++..+...|+..++.+.
T Consensus       161 e~~~~r~~w~s~l~s~~  177 (1186)
T KOG1117|consen  161 ESEGERFIWVSPLQSAL  177 (1186)
T ss_pred             CCcccceeeechhhhcc
Confidence            99999999999998764

>KOG3723|consensus

Probab=97.55  E-value=2e-05  Score=63.60  Aligned_cols=95  Identities=18%  Similarity=0.338  Sum_probs=67.0

Q ss_pred             CCCCcEEEEEEeccC-----CCceEEEEEEeCCeEEEEccCCCcc-cceEEEccCeEEEE-ccC---CCCceeEEEEEeC
Q psy2209          58 DSGSQHSGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASEDIK-ALLSIPVLGYELEA-LNE---QDNFKYVFQLKHQ  127 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~-----k~Wk~r~~vL~~~~L~~yk~~~~~~-~~~~i~L~~~~~~~-~~~---~~~~~~~f~i~~~  127 (156)
                      +..++.+|-|.-+.+     |.|+.|||.|.|..|.|.+...... ....|+|.....+. +..   ....+-.|.|. +
T Consensus       732 ~gqp~iEGQLKEKKGrWRf~kRW~TrYFTLSgA~L~~~kg~s~~dS~~~~IDl~~IRSVk~v~~kr~~rslpKAFEIF-T  810 (851)
T KOG3723|consen  732 DGQPLIEGQLKEKKGRWRFIKRWKTRYFTLSGAQLLFQKGKSKDDSDDCPIDLSKIRSVKAVAKKRRDRSLPKAFEIF-T  810 (851)
T ss_pred             CCCchhcchhhhhccchhhhhhhccceEEecchhhhcccCCCCCCCCCCCccHHHhhhHHHHHhhhhhcccchhhhee-e
Confidence            344577888875544     5899999999999999977543222 23557775544433 111   11235789998 6


Q ss_pred             CCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         128 GQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       128 ~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      .++++.+.|.++..+.+|++.|.-|.
T Consensus       811 AD~T~ILKaKDeKNAEEWlqCL~Iav  836 (851)
T KOG3723|consen  811 ADKTYILKAKDEKNAEEWLQCLNIAV  836 (851)
T ss_pred             cCceEEeecccccCHHHHHHHHHHHH
Confidence            66779999999999999999998665

>cd01228 PH_BCR-related BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain

Probab=97.45  E-value=0.001  Score=41.61  Aligned_cols=83  Identities=12%  Similarity=0.201  Sum_probs=57.2

Q ss_pred             cEEEEEEeccCCCceEEEEEEeCCeEEEEccC---CC----cccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEE
Q psy2209          62 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKAS---ED----IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVF  134 (156)
Q Consensus        62 ~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~---~~----~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~  134 (156)
                      +.+|+|.+.-.+.=+.|-|-|=++.|.|-+-.   ..    -..+-.|+|.+..+...        .|.+..+.+++|.|
T Consensus         4 v~eg~lvel~~~~rK~R~~FLFnDlLvc~~ik~~~~~k~~kY~~~w~IPL~dl~~~~~--------~~~~~~~~~KSf~~   75 (96)
T cd01228           4 VKDSFLVELVEGSRKLRHLFLFTDVLLCAKLKKTSRGKHQQYDCKWYIPLADLSFPSE--------PFRIHNKNGKSYTF   75 (96)
T ss_pred             cccceeeeehhCCCcceEEEeeccEEEEEEeeeccCccccccceeEEEEhHHheecch--------hhhccccCCceEEE
Confidence            46788888665555666666666666663321   11    11245778877666444        26665667899999


Q ss_pred             EcCCHHHHHHHHHHHHHH
Q psy2209         135 GADNEQSYERWMKAMREA  152 (156)
Q Consensus       135 ~a~s~~~~~~Wi~al~~a  152 (156)
                      .|.|..|..+|+.+|++-
T Consensus        76 ~asS~~Er~eW~~hI~~~   93 (96)
T cd01228          76 LLSSDYERSEWRESIQKL   93 (96)
T ss_pred             EecCHHHHHHHHHHHHHH
Confidence            999999999999999764

BCR (breakpoint cluster region)-related pleckstrin homology (PH) domain. The BCR-related protein has a RhoGEF(DH) domain followed by a PH domain, a C2 domain and a RhoGAP domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinases, tyrosine kinases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.

>cd01221 PH_ephexin Ephexin Pleckstrin homology (PH) domain

Probab=97.42  E-value=0.0028  Score=41.95  Aligned_cols=76  Identities=18%  Similarity=0.290  Sum_probs=44.1

Q ss_pred             ceEEEEEEeCCeEEEEccCCCcc--cceEEEccCeEEEEccCCC----------CceeEEEEEe-----CCCccEEEEcC
Q psy2209          75 WKRYWFVLKDQVMYKYKASEDIK--ALLSIPVLGYELEALNEQD----------NFKYVFQLKH-----QGQDPLVFGAD  137 (156)
Q Consensus        75 Wk~r~~vL~~~~L~~yk~~~~~~--~~~~i~L~~~~~~~~~~~~----------~~~~~f~i~~-----~~~~~~~~~a~  137 (156)
                      -+.+|+-|=.+.|.|-+.+.+..  -....+.....+.......          ..++.|.|..     .....+.|+|+
T Consensus        27 ~~~vylfLFnDlLl~tkkK~~~~f~V~dy~~r~~l~V~~~e~~~~~~~~~~~~~~~~~~F~ltLl~N~~gk~~el~L~a~  106 (125)
T cd01221          27 ARTIYLFLFNDLLLITKKKLGSTFVVFDYAPRSFLRVEKIEPDNQKIPLGSNLVGRPNLFLLTLLRNADDKQAELLLSAD  106 (125)
T ss_pred             CCcEEEEEecceEEEEEecCCCeEEEEeeccccceEEeecccccccccccccccCCCceEEEEeeccCCCCEEEEEEECC
Confidence            34567777667677666433211  0111122333333221111          2468899852     23357899999


Q ss_pred             CHHHHHHHHHHHH
Q psy2209         138 NEQSYERWMKAMR  150 (156)
Q Consensus       138 s~~~~~~Wi~al~  150 (156)
                      |++|+..||.||.
T Consensus       107 S~sdr~rWi~Al~  119 (125)
T cd01221         107 SQSDRERWLSALA  119 (125)
T ss_pred             CHHHHHHHHHhcC
Confidence            9999999999983

Ephexin Pleckstrin homology (PH) domain. Ephexin contains a RhoGEF (DH) followed by a PH domain and an SH3 domain. The ephexin PH domain is believed to act with the DH domain in mediating protein-protein interactions with the Eph receptor. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>cd01223 PH_Vav Vav pleckstrin homology (PH) domain

Probab=97.30  E-value=0.0042  Score=40.49  Aligned_cols=91  Identities=23%  Similarity=0.303  Sum_probs=58.2

Q ss_pred             EEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCc------ccceEEEccCeEEEEcc--CCC----CceeEEEEEeCC
Q psy2209          63 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI------KALLSIPVLGYELEALN--EQD----NFKYVFQLKHQG  128 (156)
Q Consensus        63 ~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~------~~~~~i~L~~~~~~~~~--~~~----~~~~~f~i~~~~  128 (156)
                      .-|.|..+.-  ..=+.||.-|=+..+.+.|...+.      .-+..+.|..+.+...+  +..    ...+.|.|.+..
T Consensus         6 ~DGelk~k~~~~~k~k~RyiFLFDk~lI~CK~~~~~~~~~~Y~~Ke~~~l~~~~I~~~~~~d~~~~~~~~~~~f~L~~~~   85 (116)
T cd01223           6 LDGEVRIKASEDQKTKLRYIFLFDKAVIVCKALGDNTGDMQYTYKDIHDLADYKIENNPSRDTEGRDTRWKYGFYLAHKQ   85 (116)
T ss_pred             cCCceEEeEeccCCCceeEEEEecceEEEEEecCCCCCCccEEhHHhhhhheeeeEecCccCcccCCcceEEEEEEEecC
Confidence            4455554432  223567766666666666644332      11555666665555432  222    245888888655


Q ss_pred             C-ccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         129 Q-DPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       129 ~-~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      + ..+.|+|.|+++...||.+|..|.
T Consensus        86 ~~~~~~f~~Ktee~K~kWm~al~~a~  111 (116)
T cd01223          86 GKTGFTFYFKTEHLRKKWLKALEMAM  111 (116)
T ss_pred             CCccEEEEeCCHHHHHHHHHHHHHHH
Confidence            3 789999999999999999998875

Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4424|consensus

Probab=97.23  E-value=0.00056  Score=55.39  Aligned_cols=94  Identities=26%  Similarity=0.400  Sum_probs=72.3

Q ss_pred             CCCcEEEEEEec--cCCCceEEEEEE---eCCeEEEEccCCCcccceEEEccCeEEEEccC--CCCceeEEEEEeCCCcc
Q psy2209          59 SGSQHSGWLHKK--SGRNWKRYWFVL---KDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKYVFQLKHQGQDP  131 (156)
Q Consensus        59 ~~~~~~G~L~k~--~~k~Wk~r~~vL---~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~f~i~~~~~~~  131 (156)
                      .+...+++|.+-  .++.|..-|++.   .+..++.|..+.|......|+|.|+.+...+.  ..+..++|.+. .....
T Consensus       495 ~~~~~~s~l~~~~~~~~~g~~a~~~vP~~d~~~~~~Yg~~qDv~a~~~iPl~~~~v~~pe~~~~~D~~~~~k~~-~s~~~  573 (623)
T KOG4424|consen  495 KENVICSHLKYMEAAGKTGILAWSVVPKSDPLVDYSYGSPQDVRAQATIPLPGVEVTIPEFVRREDLFHVFKLV-QSHLS  573 (623)
T ss_pred             CCceehhhHHHHhhcCccceeeeeeccCCCCccccccCCccccccccccccCccccCCCcccccchhcchhhhh-hhcce
Confidence            334556666553  356999999988   46888999999998889999999988864322  22244788887 55568


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHH
Q psy2209         132 LVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       132 ~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ++|.|++++-.+.|++.|..|+
T Consensus       574 ~~~~a~~~q~qq~wl~~l~~A~  595 (623)
T KOG4424|consen  574 WHLAADDEQLQQRWLEVLLLAV  595 (623)
T ss_pred             eeeccCCHHHHHHHHHHHHhhh
Confidence            9999999999999999998775

>PF15404 PH_4: Pleckstrin homology domain

Probab=97.23  E-value=0.0073  Score=42.72  Aligned_cols=30  Identities=27%  Similarity=0.565  Sum_probs=26.5

Q ss_pred             EEEEEEeccCC--CceEEEEEEeCCeEEEEcc
Q psy2209          63 HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKA   92 (156)
Q Consensus        63 ~~G~L~k~~~k--~Wk~r~~vL~~~~L~~yk~   92 (156)
                      ++|+|+.|.++  .|++++++|.+|.|..|..
T Consensus         1 ~sG~LY~K~~khs~F~~~~vvL~~G~Li~f~~   32 (185)
T PF15404_consen    1 MSGYLYQKPRKHSTFKKYFVVLIPGFLILFQL   32 (185)
T ss_pred             CCceeeecCCCCCCceEEEEEEeCCEEEEEEE
Confidence            46999988864  8999999999999999985

>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain

Probab=97.01  E-value=0.018  Score=37.67  Aligned_cols=53  Identities=21%  Similarity=0.343  Sum_probs=37.9

Q ss_pred             ceEEEccCeEEEEccCCCCceeEEEEEeCC----CccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209          99 LLSIPVLGYELEALNEQDNFKYVFQLKHQG----QDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus        99 ~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~----~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      +..|.+....+....+.+.  ..|.|-..+    ..+|.++|.|.++.+.|+..|+++.
T Consensus        56 K~~ikls~l~l~e~v~gd~--~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~~il  112 (114)
T cd01232          56 KSKLQVSKMGLTEHVEGDP--CRFALWSGDPPISDNRIILKANSQETKQEWVKKIREIL  112 (114)
T ss_pred             ecceeeeeeEeEEccCCCC--ceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence            4666777766666554444  455554322    3689999999999999999999864

Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG1738|consensus

Probab=96.99  E-value=0.00014  Score=59.29  Aligned_cols=63  Identities=19%  Similarity=0.384  Sum_probs=50.6

Q ss_pred             CcEEEEEEeccC-----CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEE
Q psy2209          61 SQHSGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQ  123 (156)
Q Consensus        61 ~~~~G~L~k~~~-----k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~  123 (156)
                      -..+|||++++.     ..|++.||||.+..|+.|.+.....+.+.|.|.+.++....+-.+++..|.
T Consensus       562 G~~qg~~~r~k~~~~~~~kW~k~~~~l~~~~l~~y~n~~~~~~e~~i~l~~~~i~~a~e~~~~~~~~~  629 (638)
T KOG1738|consen  562 GDRQGWLTRLKLNHLTQEKWRKIWMVLNDDPLLNYRNHRVRAAESVIKLPLFTISVAEEVLGKPELTG  629 (638)
T ss_pred             chhhccchhhccchHHHHHhhhheeeecCchhhhhhhhhhhchhheeeccchhhhhHHHhccCHhhhc
Confidence            347889988753     389999999999999999999999999999999888877655544444433

>KOG3549|consensus

Probab=96.69  E-value=0.0062  Score=46.86  Aligned_cols=97  Identities=19%  Similarity=0.359  Sum_probs=66.5

Q ss_pred             CCCcEEEEEEeccC-----CCceEEEEEEeCCeEEEEccCCCccc-----ceEEEcc--CeEEEE-ccCCCCceeEEEEE
Q psy2209          59 SGSQHSGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASEDIKA-----LLSIPVL--GYELEA-LNEQDNFKYVFQLK  125 (156)
Q Consensus        59 ~~~~~~G~L~k~~~-----k~Wk~r~~vL~~~~L~~yk~~~~~~~-----~~~i~L~--~~~~~~-~~~~~~~~~~f~i~  125 (156)
                      ..+.+-||..-+-.     ..++.+|..|+|..+|.|..+.-...     .....+-  -+.+.. ..-.+.+++||.|.
T Consensus       279 ~qivyMGWvne~~q~~~s~q~y~P~FLaLkG~~~y~F~tPPv~t~dw~rAe~ty~vye~mfki~Kdsd~~D~R~~CF~~q  358 (505)
T KOG3549|consen  279 EQIVYMGWVNEGVQNNISWQSYKPRFLALKGTEVYLFETPPVNTADWSRAEVTYKVYETMFKIVKDSDTVDSRQHCFLLQ  358 (505)
T ss_pred             ceEEEeeeccccccCcccccccCceeEEecCcEEEEEcCCCcchhhhhhhhhhHHHHHHHHHHhccccccccccceEEEE
Confidence            34568899876532     35688999999999999987642211     1111110  000000 11123478999999


Q ss_pred             eCCCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         126 HQGQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       126 ~~~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      ..++...||..+...++..|-.+.+.|+.+
T Consensus       359 s~~ge~~yfsVEl~seLa~wE~sfq~Atf~  388 (505)
T KOG3549|consen  359 SSGGEPRYFSVELRSELARWENSFQAATFT  388 (505)
T ss_pred             cCCCCceEEEEehhhHHHHHHHHHhhHHhH
Confidence            888899999999999999999999999865

>KOG4424|consensus

Probab=96.52  E-value=0.0069  Score=49.32  Aligned_cols=91  Identities=15%  Similarity=0.275  Sum_probs=64.3

Q ss_pred             CcEEEEEEeccCC--CceEEEEEEeCCeEEEEccCCC-----cccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEE
Q psy2209          61 SQHSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASED-----IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLV  133 (156)
Q Consensus        61 ~~~~G~L~k~~~k--~Wk~r~~vL~~~~L~~yk~~~~-----~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  133 (156)
                      .+++|-|.|...+  .-..||+.|=.+.+.|.+...-     ......+.+.+..+... +....++.|.++ ...+..-
T Consensus       272 LiKEG~l~Kis~k~~~~qeRylfLFNd~~lyc~~r~~~~~~k~~~r~~~s~~~~~v~~~-~~~~~~~tF~~~-G~~r~ve  349 (623)
T KOG4424|consen  272 LIKEGQLQKISAKNGTTQERYLFLFNDILLYCKPRKRLPGSKYEVRARCSISHMQVQED-DNEELPHTFILT-GKKRGVE  349 (623)
T ss_pred             HhhccceeeeeccCCCcceeEEEEehhHHHhhhhhhhcccceeccceeeccCcchhccc-ccccCCceEEEe-cccceEE
Confidence            4589999987654  6788999987777776654321     11233444555444332 233357899998 5678899


Q ss_pred             EEcCCHHHHHHHHHHHHHHH
Q psy2209         134 FGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       134 ~~a~s~~~~~~Wi~al~~a~  153 (156)
                      |+|.++++..+|+++|+.+.
T Consensus       350 l~a~t~~ek~eWv~~I~~~I  369 (623)
T KOG4424|consen  350 LQARTEQEKKEWVQAIQDAI  369 (623)
T ss_pred             eecCchhhHHHHHHHHHHHH
Confidence            99999999999999998765

>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain

Probab=96.52  E-value=0.04  Score=35.86  Aligned_cols=77  Identities=14%  Similarity=0.175  Sum_probs=47.2

Q ss_pred             CCc-eEEEEEEe--CCeEEEEccCCCcccceEEEccCeEEEEcc------------CC--CCceeEEEEEeCCC---ccE
Q psy2209          73 RNW-KRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEALN------------EQ--DNFKYVFQLKHQGQ---DPL  132 (156)
Q Consensus        73 k~W-k~r~~vL~--~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~------------~~--~~~~~~f~i~~~~~---~~~  132 (156)
                      +.+ +++.|.|.  +..|+|... ... ....++|....-+...            ..  .....+|.|.+..+   +.+
T Consensus        18 ~~~~~~~~f~ld~~~~~l~W~~~-~~~-~~~~l~i~~IkeIR~G~~~k~~~~~~~~~~~~~~e~~~fTIiy~~~~~~k~L   95 (115)
T cd01248          18 TSRERRRLFRLDEKGFFLYWKDE-GKK-EKKVLDISSIKEIRTGKQPKDLKLRAELNQGNSLEERCFTIVYGTDLNLKSL   95 (115)
T ss_pred             CCceeeEEEEEcCCCcEEEEeCC-CCc-cccEEEehhhhhhhCCCCCcchHHhhhhhcCCCccccEEEEEECCCCCeeEE
Confidence            344 46677774  455555543 221 3445666443322211            00  12237899886554   678


Q ss_pred             EEEcCCHHHHHHHHHHHHH
Q psy2209         133 VFGADNEQSYERWMKAMRE  151 (156)
Q Consensus       133 ~~~a~s~~~~~~Wi~al~~  151 (156)
                      .|.|+|.++++.|+..|+.
T Consensus        96 ~lVA~s~~~a~~W~~gL~~  114 (115)
T cd01248          96 DLVAPSEEEAKTWVSGLRK  114 (115)
T ss_pred             EEEECCHHHHHHHHHHHhh
Confidence            9999999999999999864

Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG4807|consensus

Probab=96.42  E-value=7.7e-06  Score=63.14  Aligned_cols=78  Identities=22%  Similarity=0.356  Sum_probs=62.2

Q ss_pred             CceEEEEEEeCCeEEEEccCCCcc---cceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHH
Q psy2209          74 NWKRYWFVLKDQVMYKYKASEDIK---ALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMR  150 (156)
Q Consensus        74 ~Wk~r~~vL~~~~L~~yk~~~~~~---~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~  150 (156)
                      .|++.|||+++..+.||.+.....   ..+.|+|..|+-+.... ..+.|.|+|. +.+.+|.+.+.+.....+|+.|++
T Consensus        34 ~~~k~~~~~~~~~~~~~~d~~A~~~~~L~~~~~LR~C~~v~e~a-~q~nY~~~i~-~~~~~~tL~~~~s~Ir~~~~~A~~  111 (593)
T KOG4807|consen   34 QWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYA-VQRNYGFQIH-TKDAVYTLSAMTSGIRRNWIEALR  111 (593)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhcccCCccccHHHHHHHHHHH-HHhccceeec-ccchhhhhHHHHHHHHHHHHHHHH
Confidence            799999999999999999764432   37888887776543211 2356999996 888889999999999999999998


Q ss_pred             HHH
Q psy2209         151 EAT  153 (156)
Q Consensus       151 ~a~  153 (156)
                      +..
T Consensus       112 kT~  114 (593)
T KOG4807|consen  112 KTV  114 (593)
T ss_pred             hcc
Confidence            643

>KOG0705|consensus

Probab=96.33  E-value=0.0021  Score=52.34  Aligned_cols=32  Identities=16%  Similarity=0.379  Sum_probs=29.4

Q ss_pred             eEEEEEeCCCccEEEEcCCHHHHHHHHHHHHH
Q psy2209         120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMRE  151 (156)
Q Consensus       120 ~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~  151 (156)
                      ++|.|+..-+.+|.|.|.+.+|++.||+||..
T Consensus       446 e~F~IVs~tgqtWhFeAtt~EERdaWvQai~s  477 (749)
T KOG0705|consen  446 ECFEIVSNTGQTWHFEATTYEERDAWVQAIQS  477 (749)
T ss_pred             ceEEEeccccchhhhhhcchhhHHHHHHHHHH
Confidence            49999988888999999999999999999974

>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A

Probab=96.27  E-value=0.081  Score=35.61  Aligned_cols=91  Identities=22%  Similarity=0.350  Sum_probs=42.2

Q ss_pred             cEEEEEEeccCC--CceEEEEEEeCCeEEEEccCCCc------ccceEEEccCeEEEEc---------------------
Q psy2209          62 QHSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDI------KALLSIPVLGYELEAL---------------------  112 (156)
Q Consensus        62 ~~~G~L~k~~~k--~Wk~r~~vL~~~~L~~yk~~~~~------~~~~~i~L~~~~~~~~---------------------  112 (156)
                      ++.|-|.+++..  .|..-.+.|=|..|..-|.....      .-...|+|.-..+...                     
T Consensus         2 i~~G~L~Rk~~~~~~~~di~~~LFDh~Lll~K~k~~~k~e~ykV~r~PIPLeLL~l~~~~d~~~~~~~~~r~s~s~~~~~   81 (135)
T PF15405_consen    2 IYKGDLKRKGDNSFNWVDIHVYLFDHYLLLTKPKKVNKREQYKVYRRPIPLELLVLESMDDPPPQRSIAKRPSSSLISSS   81 (135)
T ss_dssp             ---------------S-EEEEEEESSEEEEEEEEEETTEEEEEESS--EEGGG-EEEE--TTTS---------S------
T ss_pred             ccccccccccccccccceeEEEeeccEEEEEEEEecCCeEEEEEEECCcCHHHeeeecccCCCcccCcccccccCccCCc
Confidence            367788777753  57777777777777665543211      1144444433332210                     


Q ss_pred             -----------cCCCCceeEEEEEeCCCc--cEEEEcCCHHHHHHHHHHHHHH
Q psy2209         113 -----------NEQDNFKYVFQLKHQGQD--PLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       113 -----------~~~~~~~~~f~i~~~~~~--~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                                 .......|.|.+.+-+.+  .|.|+|+|..++++|++.|.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~yp~~~~hlG~~~~~~TLyA~s~~~R~~W~e~I~~q  134 (135)
T PF15405_consen   82 SSNSNSPSNPNSSDSKSLYPFTFRHLGRKGYSYTLYASSAQARQKWLEKIEEQ  134 (135)
T ss_dssp             -SHHHH--------TSSEEEEEE---GGG-EEEEEE-SSHHHHHHHHHHHHHH
T ss_pred             cCCCCccceeeeccCCCccCEEEEEcCCCceEEEEEeCCHHHHHHHHHHHHhc
Confidence                       011123477888766544  4699999999999999999875

>PF15411 PH_10: Pleckstrin homology domain

Probab=96.25  E-value=0.17  Score=33.20  Aligned_cols=87  Identities=16%  Similarity=0.169  Sum_probs=59.5

Q ss_pred             cEEEEEEeccCCCceEEEEEEeCCeEEEEccCCCc---------------c----cceEEEccCeEEEEccCCCCceeEE
Q psy2209          62 QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDI---------------K----ALLSIPVLGYELEALNEQDNFKYVF  122 (156)
Q Consensus        62 ~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~---------------~----~~~~i~L~~~~~~~~~~~~~~~~~f  122 (156)
                      ...|-+.......|+.+.+-|=...|.+++.....               .    .+|.|.+.+.+-+..... ...+.+
T Consensus         8 ll~g~~~V~k~~~erE~~vYLFe~illc~kE~~~~~~~~~~~~~~~~~~~~~~L~LKGrI~i~~i~~v~~~s~-~g~~~L   86 (116)
T PF15411_consen    8 LLHGTLTVGKDDSEREYEVYLFEKILLCCKEVKPKKKKSKQISSKKKKKKKTKLQLKGRIYISNITEVSSSSK-PGSYSL   86 (116)
T ss_pred             EEccEEEEEeCCcceeeeeeeeeeeEEEEecCccCccchhhcccccccCCCceEEEeeEEEEEeeeeeeccCC-CCceEE
Confidence            35566666555679999888877777777633111               1    167777766655444332 345788


Q ss_pred             EEEe---CCCccEEEEcCCHHHHHHHHHHH
Q psy2209         123 QLKH---QGQDPLVFGADNEQSYERWMKAM  149 (156)
Q Consensus       123 ~i~~---~~~~~~~~~a~s~~~~~~Wi~al  149 (156)
                      +|.-   ++...|.|...|++++..|-.+|
T Consensus        87 ~i~w~~d~e~~~F~lrf~nee~l~~W~~~L  116 (116)
T PF15411_consen   87 QISWKGDPELENFTLRFRNEEQLEQWRSAL  116 (116)
T ss_pred             EEEEcCCCCCceEEEEeCCHHHHHHHHhhC
Confidence            8874   35568999999999999998875

>KOG4236|consensus

Probab=96.19  E-value=0.01  Score=48.59  Aligned_cols=94  Identities=16%  Similarity=0.304  Sum_probs=66.5

Q ss_pred             CCCcEEEEEEeccCC--CceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC------CCCceeEEEEEeCCCc
Q psy2209          59 SGSQHSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE------QDNFKYVFQLKHQGQD  130 (156)
Q Consensus        59 ~~~~~~G~L~k~~~k--~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~------~~~~~~~f~i~~~~~~  130 (156)
                      ....++||+.....+  .-++.|-.|+...+..|.++....-...|+|.....+....      ....++||.|. +.. 
T Consensus       411 st~~kEGWmvHyt~~d~lRkrHYWrldsk~itlfqn~s~~ryYkeIPLsEIl~v~~~~~~~~vp~~~~phcFEI~-T~~-  488 (888)
T KOG4236|consen  411 STKLKEGWMVHYTSKDNLRKRHYWRLDSKCITLFQNESTNRYYKEIPLSEILSVSSNNGFSLVPAGTNPHCFEIR-TAT-  488 (888)
T ss_pred             hhhhhcceEEEEechhhhhhhhhheeccceeEeeecCCCceeEEeecHHHhheeeccCCcccCCCCCCCceEEEE-eee-
Confidence            446689999876543  33555667888888999887776668888887665554322      22357999998 554 


Q ss_pred             cEEEEcCC------------HHHHHHHHHHHHHHHh
Q psy2209         131 PLVFGADN------------EQSYERWMKAMREATT  154 (156)
Q Consensus       131 ~~~~~a~s------------~~~~~~Wi~al~~a~~  154 (156)
                      +.||--++            .+.++.|-.||+.|.+
T Consensus       489 ~vyfVge~p~~~~~~~~g~g~d~a~~w~~ai~~alM  524 (888)
T KOG4236|consen  489 TVYFVGENPSSTPGGESGVGLDAAQGWETAIQQALM  524 (888)
T ss_pred             EEEEecCCCCCCccccccccchhhccCchhhhhccc
Confidence            56666666            4558999999998765

>KOG1737|consensus

Probab=95.94  E-value=0.0043  Score=52.66  Aligned_cols=88  Identities=15%  Similarity=0.128  Sum_probs=60.3

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCccc--ceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKA--LLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~--~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      ....|||.+...  ++|.+|||+|.++.|.||+.......  .+.+.+....+...     ....+.+...+...++..+
T Consensus        77 ~~~~g~l~k~~n~~~~~~~r~f~l~~g~ls~~~~~~~~~~~~~~~~~~~~a~i~~~-----~~~~~~~~~~~~q~~~~~~  151 (799)
T KOG1737|consen   77 ASLEGILLKWRNYSKGPSSRWFVLSGGLLSYYFDNSFSKTTCGGGINLVTAWIQNG-----ERMDICSVDGSCQIYLVEL  151 (799)
T ss_pred             ccccceeeccccccCCcccceEEecCcceeeeccCCccccCCCCcccccccccccC-----CCcccchhhcccchhhhhh
Confidence            346899988754  69999999999999999987665433  55666644333221     1122333222346678889


Q ss_pred             CCHHHHHHHHHHHHHHH
Q psy2209         137 DNEQSYERWMKAMREAT  153 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a~  153 (156)
                      .+..+.+.|+.+++.+.
T Consensus       152 ~~~~~~~~~~~~~~l~~  168 (799)
T KOG1737|consen  152 SKKLQRQGWLHALELAP  168 (799)
T ss_pred             hHHHhhcchhhhhhhcc
Confidence            99999999999998763

>KOG3727|consensus

Probab=95.60  E-value=0.0013  Score=53.25  Aligned_cols=79  Identities=20%  Similarity=0.220  Sum_probs=52.4

Q ss_pred             CceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCC---ceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHH
Q psy2209          74 NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDN---FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMR  150 (156)
Q Consensus        74 ~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~---~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~  150 (156)
                      .|..+|++.....+.||++.  ..|...|.+.||.+...-....   .+++..+.-++...+++.|+++++...||+|.+
T Consensus       378 ~f~t~~dl~~~~~~s~~~s~--~ap~~~i~l~gcev~~dV~~~~~k~~i~l~~~~~~~msEi~LRCd~E~QYA~WMAaCr  455 (664)
T KOG3727|consen  378 YFFTFRDLHLSLYKSSEDSR--GAPAISINLKGCEVTPDVNLSQQKYAIKLLVPTAEGMSEIWLRCDNEQQYARWMAACR  455 (664)
T ss_pred             HHHHHHHHHHHHHhhHhhhc--CCCCCchhhcCcccCCccccccccceEEEEeecCCccceeEEecCCHHHHHHHHHHhh
Confidence            34444444455666666664  5678888898888766433222   223333333456679999999999999999999


Q ss_pred             HHHh
Q psy2209         151 EATT  154 (156)
Q Consensus       151 ~a~~  154 (156)
                      -|+.
T Consensus       456 LASK  459 (664)
T KOG3727|consen  456 LASK  459 (664)
T ss_pred             Hhhc
Confidence            8763

>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain

Probab=94.98  E-value=0.59  Score=31.39  Aligned_cols=52  Identities=10%  Similarity=0.164  Sum_probs=34.4

Q ss_pred             ceEEEccCeEEEEccCCCCceeEEEEEeC-CCccEEEEcCCHHHHHHHHHHHHHH
Q psy2209          99 LLSIPVLGYELEALNEQDNFKYVFQLKHQ-GQDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus        99 ~~~i~L~~~~~~~~~~~~~~~~~f~i~~~-~~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      +..|.+....+....+.  .+..|.|-.. ....|.++|.|.+..+.|+..|+..
T Consensus        62 K~~ikls~lglte~v~g--d~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~~i  114 (133)
T cd01227          62 KQSLKMTAVGITENVKG--DTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIRKV  114 (133)
T ss_pred             eeeEEeecccccccCCC--CccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence            44555544444333222  2456766533 3468999999999999999999864

Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.

>KOG2070|consensus

Probab=94.35  E-value=0.096  Score=42.30  Aligned_cols=91  Identities=15%  Similarity=0.300  Sum_probs=66.4

Q ss_pred             CcEEEEEEeccCC-CceEEEEEEeCCeEEEEccCCCccc---ceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          61 SQHSGWLHKKSGR-NWKRYWFVLKDQVMYKYKASEDIKA---LLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        61 ~~~~G~L~k~~~k-~Wk~r~~vL~~~~L~~yk~~~~~~~---~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      +++-|-...+.++ .=+.||++|=...|.++.-..+...   .|.+++.|..+...++.....+.|.|....-......|
T Consensus       310 iiymg~v~Vqy~~ad~~dRy~~LF~~~llflsvs~rMs~fIyegKlp~tG~iV~klEdte~~~nafeis~~ti~rIv~~c  389 (661)
T KOG2070|consen  310 IIYMGQVLVQYAGADEKDRYLLLFPNVLLFLSVSPRMSGFIYEGKLPTTGMIVTKLEDTENHRNAFEISGSTIERIVVSC  389 (661)
T ss_pred             eEeeeehhhhhcCcchhhheeeeccceeeeeEeccccchhhhccccccceeEEeehhhhhcccccccccccchhheeecc
Confidence            3444444443322 3458999998888888775554432   77889999988887777777789998744444578899


Q ss_pred             CCHHHHHHHHHHHHH
Q psy2209         137 DNEQSYERWMKAMRE  151 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~  151 (156)
                      +++.+++.|+.+|+.
T Consensus       390 ~~~~~l~~wve~ln~  404 (661)
T KOG2070|consen  390 NNQQDLQEWVEHLNK  404 (661)
T ss_pred             CChHHHHHHHHHhhh
Confidence            999999999999985

>KOG0248|consensus

Probab=93.52  E-value=0.069  Score=44.71  Aligned_cols=97  Identities=15%  Similarity=0.194  Sum_probs=67.2

Q ss_pred             CCCCcEEEEEEeccCCCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEc----------cCCCCc----eeEEE
Q psy2209          58 DSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL----------NEQDNF----KYVFQ  123 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~----------~~~~~~----~~~f~  123 (156)
                      +.....+|||.+.+-..-++.||.|.+-.++||++-.+..+.|.+.+...-....          .....+    .++..
T Consensus       355 p~~~~~~GwlT~vk~g~skkv~~alv~~~~~~~k~~~d~rp~g~l~~~~~h~~ee~~s~~sde~~e~~~~r~l~~~~~~l  434 (936)
T KOG0248|consen  355 PIDASISGWLTRVKCGLSKKVFAALVNQKLMFFKNSNDLVPNGFLCLQEKHNGTEEYSGSSDEQLETTKEHPQRKNNDSL  434 (936)
T ss_pred             CCCCCcCcceeeeccccceeeeeeeeeeeeEEeecccccccccccchhhhhcceeeccCCchhhhhhhcCccccccCceE
Confidence            3445579999998877779999999999999999988888877776632211110          011111    24444


Q ss_pred             EEe-CCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         124 LKH-QGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       124 i~~-~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +.+ +.+..+||.-.+.++-.-|+-.+..|..
T Consensus       435 ~~~~~~~~p~yLi~~t~e~k~~wly~l~~A~g  466 (936)
T KOG0248|consen  435 CVQIANEDPVYLILRTSEDKEKWLYYLKSASG  466 (936)
T ss_pred             EeccCCCCCEEEEeeeccccceeeeeehhhcc
Confidence            443 4566889998899998889888777654

>cd01255 PH_TIAM TIAM Pleckstrin homology (PH) domain

Probab=93.38  E-value=1.5  Score=29.75  Aligned_cols=79  Identities=22%  Similarity=0.345  Sum_probs=52.4

Q ss_pred             ceEEEEEEeCCeEEEEccCCCccc-------------------ceEEEccCeEEEEccC-CCCceeEEEEEeC-------
Q psy2209          75 WKRYWFVLKDQVMYKYKASEDIKA-------------------LLSIPVLGYELEALNE-QDNFKYVFQLKHQ-------  127 (156)
Q Consensus        75 Wk~r~~vL~~~~L~~yk~~~~~~~-------------------~~~i~L~~~~~~~~~~-~~~~~~~f~i~~~-------  127 (156)
                      -.-.-||++.....+|+.....+.                   ...|++....+..... .....+.+.|.+.       
T Consensus        49 ~e~~~FVFK~AVVlv~ke~~K~KkKl~~~~r~~~~~e~dp~rfr~miP~~alQVR~~n~ad~e~~~vwEliH~kSe~egR  128 (160)
T cd01255          49 LELMCFVFKSAVVLVYKERLKQKKKLMGVSRKNATNEVDPFRFRVLIPVTALQVRASSAADMESNFLWELIHLKSELEGR  128 (160)
T ss_pred             ceEEEEEecceEEEEEcCcchhhhccccccccccccccCceeEEEeeceeeeeeecCCCcCcccceEEEEEeecccccCC
Confidence            344568888888888886533221                   2245555444443221 1224588888864       


Q ss_pred             CCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         128 GQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       128 ~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      .+++|.|++.+.+..+..+.+|++..
T Consensus       129 pE~vfqLCcS~~E~k~~flK~Irsil  154 (160)
T cd01255         129 PEKVFVLCCSTAESRNAFLKTIRSIL  154 (160)
T ss_pred             CcceEEEecCCHHHHHHHHHHHHHHH
Confidence            34689999999999999999998754

TIAM Pleckstrin homology (PH) domain. TIAM (T-cell invasion and metastasis) is a guanine nucleotide exchange factor specific for RAC1. It consists of an N-terminal PH domain followed by Raf-like ras binding domain(RDB), a PDZ domain, a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. This subfamily contains the alignment of the PH domain that follows the DH domain.

>KOG1264|consensus

Probab=93.22  E-value=0.22  Score=42.82  Aligned_cols=57  Identities=28%  Similarity=0.452  Sum_probs=41.5

Q ss_pred             ceEEEccCeEEEEccCCCC-ceeEEEEEe--CCCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209          99 LLSIPVLGYELEALNEQDN-FKYVFQLKH--QGQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus        99 ~~~i~L~~~~~~~~~~~~~-~~~~f~i~~--~~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      .|..++..+.++..+.... +.++|.|..  .+...+.|+|++++++.+|+++|+.++..
T Consensus       853 rgi~d~~~~nvv~~~q~~n~~~~vf~l~~~~~~~~~~~~aadsqEe~~eW~k~i~E~t~~  912 (1267)
T KOG1264|consen  853 RGILDLNTYNVVKAPQGKNQKSFVFILEPKWQGKPPVEFAADSQEELFEWFKSIREITWK  912 (1267)
T ss_pred             hccccccccceeecccccCCcceEEEechhhhcCCceEEecCchHHHHHHHHHHHHHHHH
Confidence            4455666666666554432 448888763  35567899999999999999999988753

>KOG0517|consensus

Probab=91.06  E-value=0.0029  Score=57.45  Aligned_cols=92  Identities=22%  Similarity=0.347  Sum_probs=66.2

Q ss_pred             cEEEEEEecc----------CCCceEEEEEEeCCeEEEEccCCCccc------ceEEEc--cCeEEEEccCCCCceeEEE
Q psy2209          62 QHSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASEDIKA------LLSIPV--LGYELEALNEQDNFKYVFQ  123 (156)
Q Consensus        62 ~~~G~L~k~~----------~k~Wk~r~~vL~~~~L~~yk~~~~~~~------~~~i~L--~~~~~~~~~~~~~~~~~f~  123 (156)
                      .+.|+|+++-          .+.|...||++..+.+.+|++.+....      .+..+|  ..+.+....+..+++++|.
T Consensus      2300 ~~eG~L~Rk~~~~A~e~k~~nRsw~~vy~~i~e~el~fykD~k~~~a~ve~~~r~e~~lel~~a~i~~a~dy~kkk~v~~ 2379 (2473)
T KOG0517|consen 2300 QLEGFLYRKHLLGALEIKASNRSWDNVYCRIREKELGFYKDAKKDLASVELLVRGEPPLELDMAAIEVASDYHKKKHVFL 2379 (2473)
T ss_pred             HHHhHHHHHHHHhhhhhhhhcccHHHHHHHHHhccchhhcccCcccccchhhccCCcchhcchhHHHHHHHHHHHhHhhh
Confidence            4788886652          148999999999999999998765432      222222  2222222334455678999


Q ss_pred             EEeCCCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         124 LKHQGQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       124 i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      +..+.+..|.|+|.++++|..|+.++..+.
T Consensus      2380 l~~~~gae~llq~k~ee~m~sWL~~~a~~~ 2409 (2473)
T KOG0517|consen 2380 LQLPPGAEHLLQAKDEEEMESWLRALAVKR 2409 (2473)
T ss_pred             hcCCchHHHHHhhccHHHHHHHHHHHHHHH
Confidence            988888899999999999999999886554

>KOG3531|consensus

Probab=88.59  E-value=0.26  Score=42.35  Aligned_cols=93  Identities=22%  Similarity=0.293  Sum_probs=64.0

Q ss_pred             CcEEEEEEeccCCCceEEEEEEe-CCeEEEEccCCCcc---cceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          61 SQHSGWLHKKSGRNWKRYWFVLK-DQVMYKYKASEDIK---ALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        61 ~~~~G~L~k~~~k~Wk~r~~vL~-~~~L~~yk~~~~~~---~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      ....|-|.|..+++-++|-|-|- +-.||-.++..-..   -.|-|++. .++...+..-.-|++|.|. ......+.+|
T Consensus       750 ~ir~g~llK~skkgLqqrmfFLfsdillytsk~~~~~~~fri~g~lP~~-l~~en~en~~s~p~~~ti~-~~qk~i~vsa  827 (1036)
T KOG3531|consen  750 FIRSGCLLKLSKKGLQQRMFFLFSDILLYTSKGPDVQKCFRINGDLPLT-LTMENSENEWSVPHCFTIS-GAQKQIYVSA  827 (1036)
T ss_pred             hhhcCCchhhccccchhhhhhhhhhhheeccCCCChhheeEeccCCceE-eeeecccccccCCceEEEe-ccceEEEEec
Confidence            34678888887777766655554 44444444422222   26666776 4554455555578999998 7778899999


Q ss_pred             CCHHHHHHHHHHHHHHHhc
Q psy2209         137 DNEQSYERWMKAMREATTL  155 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a~~~  155 (156)
                      .+..+...|+..++.+..+
T Consensus       828 st~~~sk~~~~~r~~~i~~  846 (1036)
T KOG3531|consen  828 STRRESKKWEFDRRKAIDL  846 (1036)
T ss_pred             cchhhhhhhhhccchhhhh
Confidence            9999999999988776543

>KOG3551|consensus

Probab=88.05  E-value=0.61  Score=36.75  Aligned_cols=93  Identities=16%  Similarity=0.409  Sum_probs=61.6

Q ss_pred             CCCcEEEEEEeccC----CCceEEEEEEeCCeEEEEccCCCc-----ccceEEEccCeEEEEccCCC-----CceeEEEE
Q psy2209          59 SGSQHSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDI-----KALLSIPVLGYELEALNEQD-----NFKYVFQL  124 (156)
Q Consensus        59 ~~~~~~G~L~k~~~----k~Wk~r~~vL~~~~L~~yk~~~~~-----~~~~~i~L~~~~~~~~~~~~-----~~~~~f~i  124 (156)
                      ..+.+-|||..+-.    +.|+-.+.+|+...|.+|.+-...     .|....+|..-.++......     +-...|..
T Consensus       290 ~evkHiGWLaeq~~~~G~~~w~P~l~~lTekelliYes~P~~keaws~P~~~ypLvaTRLvhsg~~~~s~~~g~~lsFa~  369 (506)
T KOG3551|consen  290 SEVKHIGWLAEQVSGGGISQWKPKLMALTEKELLIYESMPWTKEAWSRPRHTYPLVATRLVHSGSGKGSVIKGLTLSFAT  369 (506)
T ss_pred             cchhhhhhHHhhccCCChhhhhhheeeechhhhhhhhcChhhHHHhcChhhhhhhhhhhheecCCCCCCCcCCceEEEEE
Confidence            35668899987632    479999999999999999864332     34455555333333221111     11257777


Q ss_pred             EeC---CCccEEEEcCCHHHHHHHHHHHHH
Q psy2209         125 KHQ---GQDPLVFGADNEQSYERWMKAMRE  151 (156)
Q Consensus       125 ~~~---~~~~~~~~a~s~~~~~~Wi~al~~  151 (156)
                      ++.   +-.++.|.+++..|+..|...|-.
T Consensus       370 RtGTrqGV~thlfrvEThrdLa~WtRslVq  399 (506)
T KOG3551|consen  370 RTGTRQGVETHLFRVETHRELAAWTRSLVQ  399 (506)
T ss_pred             ecccccceEEEEEEeccHHHHHHHHHHHHH
Confidence            732   335899999999999999988743

>PF08458 PH_2: Plant pleckstrin homology-like region; InterPro: IPR013666 This domain describes a pleckstrin homology (PH)-like region found in several plant proteins of unknown function

Probab=86.80  E-value=2.7  Score=27.20  Aligned_cols=35  Identities=26%  Similarity=0.573  Sum_probs=29.5

Q ss_pred             ceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         118 FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       118 ~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ..+.|.|. +..+..-|.|+|..+.+.|++.|..-.
T Consensus        69 ~~~yfgL~-T~~G~vEfec~~~~~~k~W~~gI~~mL  103 (110)
T PF08458_consen   69 ERRYFGLK-TAQGVVEFECDSQREYKRWVQGIQHML  103 (110)
T ss_pred             eEEEEEEE-ecCcEEEEEeCChhhHHHHHHHHHHHH
Confidence            34789998 557789999999999999999997644

>KOG4407|consensus

Probab=86.50  E-value=0.022  Score=50.64  Aligned_cols=93  Identities=16%  Similarity=0.222  Sum_probs=66.3

Q ss_pred             CCcEEEEEEecc-----C-------CCceEEEEEEeCCeEEEEccCCCccc--------------ceEEEccCeEEEEcc
Q psy2209          60 GSQHSGWLHKKS-----G-------RNWKRYWFVLKDQVMYKYKASEDIKA--------------LLSIPVLGYELEALN  113 (156)
Q Consensus        60 ~~~~~G~L~k~~-----~-------k~Wk~r~~vL~~~~L~~yk~~~~~~~--------------~~~i~L~~~~~~~~~  113 (156)
                      +..+.|||+.+.     +       +.|++.|.+|.+..|+.|++.....+              ...+.+.+|.+.+.-
T Consensus       922 d~~megWly~~q~~SkkGk~tGssLr~wk~~y~~l~ghsl~L~ss~re~~~~~aas~as~~~st~tts~c~nscltdI~y 1001 (1973)
T KOG4407|consen  922 DSEMEGWLYVLQSSSKKGKATGSSLREWKLSYTGLHGHSLVLNSSAREHNSQSAASLASSSCSTATTSECLNSCLTDIQY 1001 (1973)
T ss_pred             hhhhhcceeeeeecccCCcccCcchhhhhhHHHHhccccceecccccccCcchhhhhcccccccccCccccccchhhhhh
Confidence            345899998752     1       27999999999999999997655221              233445555554433


Q ss_pred             CCCCceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         114 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       114 ~~~~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      ...++..+|.+...+-=.+.|++++.++|-.|+....+.
T Consensus      1002 setkrn~vfRLTt~d~ce~lfqaeDrddmlgG~~ttq~S 1040 (1973)
T KOG4407|consen 1002 SETKRNQVFRLTTNDLCEGLFQAEDRDDMLGGLSTTQSS 1040 (1973)
T ss_pred             hhhhhhhHHHhHHHHHHhHhhccCccccccchhhhhhhc
Confidence            344567899997555456899999999999999887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
1wgq_A	109	Solution Structure Of The Pleckstrin Homology Domai		6e-16
2yry_A	122	Solution Structure Of The Ph Domain Of Pleckstrin H		2e-11
2d9y_A	117	Solution Structure Of The Ph Domain Of Pepp-3 From		2e-11
2dkp_A	128	Solution Structure Of The Ph Domain Of Pleckstrin H		9e-09
1upq_A	123	Crystal Structure Of The Pleckstrin Homology (Ph) D		8e-08
1v89_A	118	Solution Structure Of The Pleckstrin Homology Domai		1e-07
3cxb_B	112	Crystal Structure Of Sifa And Skip Length = 112		4e-04
3hw2_B	105	Crystal Structure Of The Sifa-skip(ph) Complex Leng		4e-04
1fhw_A	129	Structure Of The Pleckstrin Homology Domain From Gr		5e-04
1fhx_A	129	Structure Of The Pleckstrin Homology Domain From Gr		6e-04
2r0d_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		6e-04
2r09_A	347	Crystal Structure Of Autoinhibited Form Of Grp1 Arf		7e-04

>pdb|1WGQ|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of Mouse Ethanol Decreased 4 Protein Length = 109

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 56/86 (65%)
Query: 69  KKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG 128
           K S + WK  WFV+K++V+Y Y ASED+ AL S P+LG+ +  + ++++   VFQL H+G
Sbjct: 18  KGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKG 77
Query: 129 QDPLVFGADNEQSYERWMKAMREATT 154
               VF AD+  S +RW+ A +E T 
Sbjct: 78  MVFYVFKADDAHSTQRWIDAFQEGTV 103

>pdb|2YRY|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Family A Member 6 From Human Length = 122

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 64  SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-- 118
           +GWL K++    + W + WFVL D+ ++ YK  ++   L SIP+L + + A+   DN   
Sbjct: 25  AGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISR 84
Query: 119 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
           K+ F+ +H G     F A++ +  E W++AM EA  +
Sbjct: 85  KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 121

>pdb|2D9Y|A Chain A, Solution Structure Of The Ph Domain Of Pepp-3 From Human Length = 117

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 5/95 (5%)
Query: 64  SGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF-- 118
           +GWL K++    + W + WFVL D+ ++ YK  ++   L SIP+L + + A+   DN   
Sbjct: 14  AGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISR 73
Query: 119 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
           K+ F+ +H G     F A++ +  E W++AM EA 
Sbjct: 74  KHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108

>pdb|2DKP|A Chain A, Solution Structure Of The Ph Domain Of Pleckstrin Homology Domain-Containing Protein Family A Member 5 From Human Length = 128

Iteration: 1
 Score = 55.8 bits (133), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 65  GWLHKKSGRN---WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD--NFK 119
           GWL+K+       WK+ WFVL D  ++ Y+  ++   L SI +  +++  L  +D  N K
Sbjct: 25  GWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHINRK 84
Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
           Y F+  H       F  D  +  E WMKAM +A  +
Sbjct: 85  YAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALV 120

>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain Of Pepp1 Length = 123

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 65  GWLHKK--SG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL--EALNEQDNFK 119
           GWLHK+  SG R WKR WFVL    ++ YK S +   L S+ +  Y +  +        +
Sbjct: 15  GWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRR 74
Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
           + F  +H G    V  AD  +    W++A+  A+
Sbjct: 75  FTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS 108

>pdb|1V89|A Chain A, Solution Structure Of The Pleckstrin Homology Domain Of Human Kiaa0053 Protein Length = 118

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 11/107 (10%)
Query: 55  TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIK--ALLSIPVLGYELE 110
           ++  SG    GWL K+    +NW++ +FVL+ Q +Y YK  ED K    + +P    +  
Sbjct: 2   SSGSSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEI 61
Query: 111 ALNEQDNFKYVFQL-------KHQGQDPLVFGADNEQSYERWMKAMR 150
           A N ++  K+VF++          GQD  V  A ++   E W+K +R
Sbjct: 62  ATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLR 108

>pdb|3CXB|B Chain B, Crystal Structure Of Sifa And Skip Length = 112

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 65  GWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
           G LH K+G       +WK  + VL + ++Y+Y    D+  LLS+ + G +       +  
Sbjct: 4   GMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTT 63
Query: 119 --KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
              + FQ+    +  L   A++E     WM+ + +A +
Sbjct: 64  DRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 101

>pdb|3HW2|B Chain B, Crystal Structure Of The Sifa-skip(ph) Complex Length = 105

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Query: 65  GWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
           G LH K+G       +WK  + VL + ++Y+Y    D+  LLS+ + G +       +  
Sbjct: 6   GMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTT 65
Query: 119 --KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
              + FQ+    +  L   A++E     WM+ + +A +
Sbjct: 66  DRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 103

>pdb|1FHW|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In Complex With Inositol(1,3,4,5,6)pentakisphosphate Length = 129

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 65  GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 120
           GWL K  GR   WKR WF+L D  +Y ++ + D +    IP+    +  + +  + N   
Sbjct: 7   GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 66
Query: 121 VFQLKHQGQ 129
           ++   H+GQ
Sbjct: 67  LYNPSHKGQ 75

>pdb|1FHX|A Chain A, Structure Of The Pleckstrin Homology Domain From Grp1 In Complex With Inositol 1,3,4,5-Tetrakisphosphate Length = 129

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 65  GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 120
           GWL K  GR   WKR WF+L D  +Y ++ + D +    IP+    +  + +  + N   
Sbjct: 7   GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 66
Query: 121 VFQLKHQGQ 129
           ++   H+GQ
Sbjct: 67  LYNPSHKGQ 75

>pdb|2R0D|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 65  GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 120
           GWL K  GR   WKR WF+L D  +Y ++ + D +    IP+    +  + +  + N   
Sbjct: 217 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 276
Query: 121 VFQLKHQGQ 129
           ++   H+GQ
Sbjct: 277 LYNPSHKGQ 285

>pdb|2R09|A Chain A, Crystal Structure Of Autoinhibited Form Of Grp1 Arf Gtpase Exchange Factor Length = 347

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 65  GWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKY 120
           GWL K  GR   WKR WF+L D  +Y ++ + D +    IP+    +  + +  + N   
Sbjct: 217 GWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFE 276
Query: 121 VFQLKHQGQ 129
           ++   H+GQ
Sbjct: 277 LYNPSHKGQ 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	1e-33
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	3e-27
2d9y_A	117	Pleckstrin homology domain-containing protein fami	4e-27
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	3e-26
2yry_A	122	Pleckstrin homology domain-containing family A mem	6e-26
2dkp_A	128	Pleckstrin homology domain-containing family A mem	4e-25
3cxb_B	112	Pleckstrin homology domain-containing family M mem	1e-23
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	2e-23
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	3e-21
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	4e-21
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	4e-21
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	3e-20
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	2e-19
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	2e-18
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	1e-17
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	2e-17
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	2e-17
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	2e-17
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	2e-17
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	2e-17
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	4e-17
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	4e-17
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	1e-16
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	3e-16
1wi1_A	126	Calcium-dependent activator protein for secretion,	4e-16
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	1e-15
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	2e-15
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	5e-15
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	7e-15
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	9e-15
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	1e-14
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	1e-14
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	1e-14
2d9v_A	130	Pleckstrin homology domain-containing protein fami	2e-14
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	4e-14
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	5e-14
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	6e-14
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	6e-14
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	1e-13
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	1e-13
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	2e-13
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	2e-13
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	3e-13
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	2e-12
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	3e-12
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	3e-12
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	4e-12
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	7e-12
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	2e-11
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	2e-11
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	7e-10
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	3e-09
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	7e-09
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	9e-09
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	2e-08
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	2e-07
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-07
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	6e-07
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	2e-06
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	2e-05
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	4e-05
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	1e-04

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 109

 Score =  113 bits (285), Expect = 1e-33
 Identities = 42/101 (41%), Positives = 64/101 (63%), Gaps = 2/101 (1%)

Query: 56  ANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 113
           +  SGS  SG+L++  G    WK  WFV+K++V+Y Y ASED+ AL S P+LG+ +  + 
Sbjct: 3   SGSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVK 62

Query: 114 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
           ++++   VFQL H+G    VF AD+  S +RW+ A +E T 
Sbjct: 63  DENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGTV 103

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 112

 Score = 97.3 bits (242), Expect = 3e-27
 Identities = 21/106 (19%), Positives = 46/106 (43%), Gaps = 7/106 (6%)

Query: 55  TANDSGSQHSGWLHK-KSGRNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYELE 110
           ++  SGS   G L   +SG  W   W  +     QV++    S+D +   +IP+   +L 
Sbjct: 2   SSGSSGSLLCGPLRLSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLS 61

Query: 111 ALNEQDNF--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
             + ++     +V++L    +      A + +  ++W++ +  A  
Sbjct: 62  VPDPEERLDSGHVWKL-QWAKQSWYLSASSAELQQQWLETLSTAAH 106

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 117

 Score = 97.1 bits (242), Expect = 4e-27
 Identities = 31/104 (29%), Positives = 58/104 (55%), Gaps = 5/104 (4%)

Query: 55  TANDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA 111
           ++ ++    +GWL K++    + W + WFVL D+ ++ YK  ++   L SIP+L + + A
Sbjct: 5   SSGNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAA 64

Query: 112 LNEQD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
           +   D  + K+ F+ +H G     F A++ +  E W++AM EA 
Sbjct: 65  VQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 108

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 107

 Score = 94.9 bits (236), Expect = 3e-26
 Identities = 20/100 (20%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 55  TANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIK-ALLSIPVLGYELEALN 113
           ++  SG + S +L+      WK  W  ++D  ++ Y+     K A   + ++G E+    
Sbjct: 2   SSGSSGLETSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDP 61

Query: 114 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
             D+  Y F++ H+G++     A + +    W+  +   +
Sbjct: 62  SPDH-LYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSES 100

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 122

 Score = 94.4 bits (235), Expect = 6e-26
 Identities = 31/104 (29%), Positives = 57/104 (54%), Gaps = 5/104 (4%)

Query: 57  NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 113
            ++    +GWL K++    + W + WFVL D+ ++ YK  ++   L SIP+L + + A+ 
Sbjct: 18  PNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQ 77

Query: 114 EQD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
             D  + K+ F+ +H G     F A++ +  E W++AM EA  +
Sbjct: 78  PSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 121

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens} Length = 128

 Score = 92.1 bits (229), Expect = 4e-25
 Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 63  HSGWLHKKSGR---NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF- 118
             GWL+K+       WK+ WFVL D  ++ Y+  ++   L SI +  +++  L  +D+  
Sbjct: 23  RRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHIN 82

Query: 119 -KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL 155
            KY F+  H       F  D  +  E WMKAM +A  +
Sbjct: 83  RKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAALV 120

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B Length = 112

 Score = 87.9 bits (218), Expect = 1e-23
 Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 8/99 (8%)

Query: 64  SGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDN 117
            G LH K+G       +WK  + VL + ++Y+Y    D+  LLS+ + G +       + 
Sbjct: 3   EGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANT 62

Query: 118 F--KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
               + FQ+    +  L   A++E     WM+ + +A +
Sbjct: 63  TDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAVS 101

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A* Length = 123

 Score = 87.5 bits (217), Expect = 2e-23
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 58  DSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE 114
           +      GWLHK+     R WKR WFVL    ++ YK S +   L S+ +  Y +     
Sbjct: 8   NLPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGP 67

Query: 115 QD--NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
                 ++ F  +H G    V  AD  +    W++A+  A+ 
Sbjct: 68  GAPRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRASR 109

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 113

 Score = 82.0 bits (203), Expect = 3e-21
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 3/95 (3%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALNEQDNFK 119
             G+L KK      WK  W VL +  +  YK   D      IP+ G  L     +     
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRM 66

Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
           +VF++    Q    F A   +  + W++ + +A  
Sbjct: 67  FVFKITTTKQQDHFFQAAFLEERDAWVRDINKAIK 101

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A Length = 148

 Score = 82.7 bits (204), Expect = 4e-21
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 63  HSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 116
            +G+L K+          W++ W  L   V Y Y + +D +      + GY++   N   
Sbjct: 19  KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLR 78

Query: 117 NF---KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
                   F++    +    F A + +  E W++ ++  
Sbjct: 79  KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 117

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1 Length = 108

 Score = 81.7 bits (202), Expect = 4e-21
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 63  HSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 116
             G+L KKS         W++ W V+   + Y Y   +  +   +  + GY +       
Sbjct: 5   KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLR 64

Query: 117 ---NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
                +  F+L  Q +    F A +      W+  +   
Sbjct: 65  RDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL 103

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A Length = 211

 Score = 82.1 bits (202), Expect = 3e-20
 Identities = 22/133 (16%), Positives = 45/133 (33%), Gaps = 10/133 (7%)

Query: 30  EMGTAGRRKPSKKYRKYVPQRLIEVTANDSGS-QHSGWLHKKSG------RNWKRYWFVL 82
            +  A  R            +   + A D      +G+L K+          W++ W  L
Sbjct: 74  TISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCAL 133

Query: 83  KDQVMYKYKASEDIKALLSIPVLGYELEALNEQD---NFKYVFQLKHQGQDPLVFGADNE 139
              V Y Y + +D +      + GY++   N           F++    +    F A + 
Sbjct: 134 SKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFTAASP 193

Query: 140 QSYERWMKAMREA 152
           +  E W++ ++  
Sbjct: 194 KDAEEWVQQLKFI 206

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 118

 Score = 77.5 bits (191), Expect = 2e-19
 Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 11/102 (10%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL--NEQDNF 118
             GWL K+    +NW++ +FVL+ Q +Y YK  ED K    + + G  ++ +  N ++  
Sbjct: 10  KMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAG 69

Query: 119 KYVFQLKHQGQDPL-------VFGADNEQSYERWMKAMREAT 153
           K+VF++     D         V  A ++   E W+K +R   
Sbjct: 70  KFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A Length = 129

 Score = 75.6 bits (186), Expect = 2e-18
 Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKD--QVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
             G L K+    +NWK   F+L++    ++ Y  +     L +I + G  + ++    N 
Sbjct: 20  KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 79

Query: 119 K-----YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           +      +F++    +      A   +    W+KA++ A
Sbjct: 80  RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 129

 Score = 73.4 bits (180), Expect = 1e-17
 Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 13/105 (12%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYELEALNE--- 114
             G+L K+    +NWK   FVL+     + Y   + E+ + +    + G  + AL +   
Sbjct: 20  KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGV 79

Query: 115 -----QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
                 +    +F++  +        A ++     W++A+++ T+
Sbjct: 80  PTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLTS 124

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A Length = 109

 Score = 72.0 bits (177), Expect = 2e-17
 Identities = 19/100 (19%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
             G L K+    +NWK   F+L++    ++ Y  +     L +I + G  + ++    N 
Sbjct: 9   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 68

Query: 119 K-----YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
           +      +F++    +      A   +    W+KA++ A+
Sbjct: 69  RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 108

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A Length = 126

 Score = 72.4 bits (178), Expect = 2e-17
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 3/97 (3%)

Query: 58  DSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 115
            S     G+L K+ G  + WK  WF L    +  +K     + +  + +        +  
Sbjct: 15  PSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYS 74

Query: 116 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
                 F L    +      A      + W+K +R  
Sbjct: 75  QERVNCFCLVFPFRT-FYLCAKTGVEADEWIKILRWK 110

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1 Length = 125

 Score = 72.5 bits (178), Expect = 2e-17
 Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 63  HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY---ELEALNEQDN 117
            +G+  K+     NWKR +F L +  +  +K+  + + L  IP+      +    ++   
Sbjct: 16  KAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMM 75

Query: 118 FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
              +F++    +      AD+ +    W+KA+  A
Sbjct: 76  RDNLFEIVTTSR-TFYVQADSPEEMHSWIKAVSGA 109

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 119

 Score = 72.1 bits (177), Expect = 2e-17
 Identities = 21/104 (20%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 55  TANDSGSQHSGWLHKKSGR----NWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYE 108
           ++  SG +  G+L K  G+     WK  WF   ++   +Y  + ++D   L SI +    
Sbjct: 2   SSGSSGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAV 61

Query: 109 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
            +   + D  + +F++K   +  +   A  +Q+   W++ ++  
Sbjct: 62  FDC--KADAEEGIFEIKTPSRV-ITLKAATKQAMLYWLQQLQMK 102

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 150

 Score = 73.1 bits (179), Expect = 2e-17
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 58  DSGSQHSGWLHKKSG--------RNWKRYWFVLK-----DQVMYKYKASEDIKALLSIPV 104
             G    GWL+K +         R++KR +F L         +  YK  +  K       
Sbjct: 15  KGGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIF 74

Query: 105 LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           L   +  +      ++ F+LK Q +   +  AD+E   E W+  + + 
Sbjct: 75  LDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKI 122

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus} Length = 228

 Score = 74.3 bits (182), Expect = 4e-17
 Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 63  HSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 115
             GWLH   G       RNWK+ WFVL+   +  ++   + K   ++ V     + + + 
Sbjct: 60  KQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSA--KEIIDN 117

Query: 116 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
            N +    +           A++ +   +W   + + 
Sbjct: 118 TNKENGIDIIM-ADRTFHLIAESPEDASQWFSVLSQV 153

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 149

 Score = 72.5 bits (177), Expect = 4e-17
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY-ELEALNEQDNFK 119
             G+L  K    R ++ YW  L+   ++ Y   + I  +  + ++    L   N  +   
Sbjct: 20  FEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNC 79

Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
             F L    ++ +    +N +S E W   +   T LS
Sbjct: 80  AKFTLVLPKEE-VQLKTENTESGEEWRGFILTVTELS 115

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A Length = 120

 Score = 70.4 bits (172), Expect = 1e-16
 Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 19/113 (16%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKA---LLSIPVLGYELEALNEQD- 116
            SG+L ++S   +++ + ++VL    ++++K ++  K    ++S+ +    +   + ++ 
Sbjct: 8   KSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNS 67

Query: 117 ---------NFKYVFQLKHQG----QDPLVFGADNEQSYERWMKAMREATTLS 156
                    + K+V   K  G        VF AD+ +S   W   ++  T+ S
Sbjct: 68  TSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKILTSTS 120

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 115

 Score = 69.0 bits (169), Expect = 3e-16
 Identities = 17/93 (18%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 63  HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK 119
            SGWL K S    R +++ W       +  Y   +++ +   IP+       +       
Sbjct: 10  KSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG----D 65

Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
             F++    +   VF  + E+    W+  +  A
Sbjct: 66  NKFEVVTTQRT-FVFRVEKEEERNDWISILLNA 97

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 126

 Score = 69.2 bits (169), Expect = 4e-16
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 11/106 (10%)

Query: 58  DSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKA----SEDIKALLSIPVLGYEL- 109
            SG +HSG+L        + WK+ +FVL     Y +       +  +    + + GY + 
Sbjct: 5   SSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVD 64

Query: 110 --EALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
             +     +  +  F    +G D ++F +D+EQ    W++AM  AT
Sbjct: 65  YTDPQPGLEGGRAFFNAVKEG-DTVIFASDDEQDRILWVQAMYRAT 109

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 67.4 bits (165), Expect = 1e-15
 Identities = 22/93 (23%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 63  HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL-EALNEQDNFK 119
             G++ KK  R  NW   WFVLK  ++  Y + +       I +      E+L ++D  K
Sbjct: 10  KQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKK 69

Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
            +F +K   +      A +++  + W++A+   
Sbjct: 70  CLFLVKCFDKT-FEISASDKKKKQEWIQAIHST 101

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 126

 Score = 67.3 bits (164), Expect = 2e-15
 Identities = 16/110 (14%), Positives = 44/110 (40%), Gaps = 14/110 (12%)

Query: 57  NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEA 111
            D  ++  G+L  +       + R +F+L  Q   +  Y  +    A+ +  V   +L  
Sbjct: 11  VDRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTY 70

Query: 112 L--------NEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
           +         ++    + F + +         A++++  + W++A+ +A+
Sbjct: 71  ISKVSIATPKQKPKTPFCFVI-NALSQRYFLQANDQKDLKDWVEALNQAS 119

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A* Length = 127

 Score = 66.2 bits (161), Expect = 5e-15
 Identities = 24/113 (21%), Positives = 42/113 (37%), Gaps = 24/113 (21%)

Query: 63  HSGWLHKKSGR--NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKY 120
             GWL K  GR   WKR WF+L D  +Y ++ + D +    IP+    +  + +      
Sbjct: 7   REGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRK-PN 65

Query: 121 VFQLKHQGQDPL---------------------VFGADNEQSYERWMKAMREA 152
            F+L +                              A + +  E WMK+++ +
Sbjct: 66  CFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKAS 118

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1 Length = 122

 Score = 65.7 bits (160), Expect = 7e-15
 Identities = 18/119 (15%), Positives = 45/119 (37%), Gaps = 18/119 (15%)

Query: 56  ANDSGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKAL------ 99
              +G  H G++ +K          S R+W + +   K   +  YK  +  K+       
Sbjct: 3   GTGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFR 62

Query: 100 --LSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
              S  +    +E  ++    K+V ++K       +  A ++    +W+ +++  +  +
Sbjct: 63  GEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDST 121

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A* Length = 129

 Score = 65.7 bits (160), Expect = 9e-15
 Identities = 19/108 (17%), Positives = 36/108 (33%), Gaps = 19/108 (17%)

Query: 64  SGWLH--------KKSGRNWKRYWFVLKDQVMYKYK-----------ASEDIKALLSIPV 104
           SG L+        +K  +NW   W VL    +  Y+                +   S+ +
Sbjct: 15  SGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDL 74

Query: 105 LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
            G  L       + + V  ++       +  +D+E     W +A+R  
Sbjct: 75  RGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTV 122

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 137

 Score = 65.8 bits (160), Expect = 1e-14
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 64  SGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASEDIKA--LLSIPVLGYELEALNEQD 116
              L          + ++++W V K+  +  YK+ ++     +  + + G E+       
Sbjct: 12  KDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVS 71

Query: 117 NFKYVFQL---KHQGQDPLVFGADNEQSYERWMKAMREAT 153
             K+  +L     +G   +     +EQ Y RWM   R A+
Sbjct: 72  GQKFCIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCRLAS 111

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 64.9 bits (158), Expect = 1e-14
 Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 8/99 (8%)

Query: 57  NDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 113
           +  GS+  G+L KKS    + W+R    +K+ ++    A+ + +    + +L  +++   
Sbjct: 6   SGYGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSN-RQPAKLNLLTCQVKPNA 64

Query: 114 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           E    K  F L         F A++EQ Y  W+  +  +
Sbjct: 65  ED---KKSFDLISH-NRTYHFQAEDEQDYVAWISVLTNS 99

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A Length = 168

 Score = 66.3 bits (161), Expect = 1e-14
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 17/114 (14%)

Query: 59  SGSQHSGWLHKK------------SGRNWKRYWFVLKDQVMYKYK----ASEDIKALLSI 102
           S +   GWLH +            S R WK+ + VL+   +Y YK     +   +    I
Sbjct: 1   SDAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPI 60

Query: 103 PVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
            V    ++    +   K VF+L     +  +F A++      W+K ++E++ L+
Sbjct: 61  SVNACLIDISYSETKRKNVFRLTTSDCE-CLFQAEDRDDMLAWIKTIQESSNLN 113

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus} Length = 130

 Score = 65.0 bits (158), Expect = 2e-14
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 13/107 (12%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQVM---YKYKASEDIKALLSIPVLGYELEALNE--- 114
             GWL ++S   R WKR WF L        Y  + ++D +  + I     +++   E   
Sbjct: 10  RGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQD 69

Query: 115 -----QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
                  +   +  +  +    L   A+       W  A+ EA +  
Sbjct: 70  VQPPEGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEANSTP 116

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens} Length = 124

 Score = 63.7 bits (155), Expect = 4e-14
 Identities = 21/113 (18%), Positives = 42/113 (37%), Gaps = 22/113 (19%)

Query: 62  QHSGWLHKK---------SGRNWKRYWFVLKDQVMYKYK------------ASEDIKALL 100
             +G LH+            ++W   W VL+  V+  +K             S+      
Sbjct: 9   DKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEY 68

Query: 101 SIPVLGYELE-ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           ++ + G  L  A  ++ + K V +L+ +     +   D+E     W KA+ + 
Sbjct: 69  TVELRGATLSWAPKDKSSRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1 Length = 117

 Score = 63.6 bits (155), Expect = 5e-14
 Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 14/110 (12%)

Query: 55  TANDSGSQHSGWLHKKSG--RNWKRYWFVLKD---QVMYKYKASEDIKALLSIPV----- 104
           ++  SG  + G L+KK    + WK  WFVL     Q+ Y Y    D +    I +     
Sbjct: 2   SSGSSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRY-YDHRMDTECKGVIDLAEVEA 60

Query: 105 --LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
              G       +  + K  F +K   +    F A +  S ++W+  ++  
Sbjct: 61  VAPGTPTIGAPKTVDEKAFFDVKTTRRV-YNFCAQDVPSAQQWVDRIQSC 109

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A Length = 112

 Score = 63.4 bits (154), Expect = 6e-14
 Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 13/105 (12%)

Query: 63  HSGWLHKKSG--RNWKRYWFVL-KDQVMYKYKASEDIKALLSIPVLGYELE--------- 110
            SGWL ++S   + WK+ WF L  D  +  Y           + +    +          
Sbjct: 7   KSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRD 66

Query: 111 -ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
               +  +   + Q+  +    +   A++      W   ++++ T
Sbjct: 67  TQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSRT 111

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 130

 Score = 63.6 bits (154), Expect = 6e-14
 Identities = 23/124 (18%), Positives = 47/124 (37%), Gaps = 25/124 (20%)

Query: 55  TANDSGSQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 113
           ++  SG   + WL  +   ++W + W VLK  V+  YK  ++ + + ++ +   E+    
Sbjct: 2   SSGSSGIVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERP 61

Query: 114 EQDNFKYVFQLKHQGQDP-----------------------LVFGADNEQSYERWMKAMR 150
            + +  + F+L H  +                         L+  A +E     WM A+ 
Sbjct: 62  SKKD-GFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALE 120

Query: 151 EATT 154
            A  
Sbjct: 121 LALK 124

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus} Length = 279

 Score = 65.7 bits (159), Expect = 1e-13
 Identities = 23/115 (20%), Positives = 43/115 (37%), Gaps = 20/115 (17%)

Query: 62  QHSGWLHKKSG--------------RNWKRYWFVLKDQVMYKYK------ASEDIKALLS 101
           + +G L  K+               R WK YW  LK   ++ Y+         +     +
Sbjct: 12  RKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHA 71

Query: 102 IPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
           + V    ++A+ E     +VF L +   D  +F   ++   E W+ A+  A   +
Sbjct: 72  VWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAA 126

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A Length = 125

 Score = 62.6 bits (152), Expect = 1e-13
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 9/107 (8%)

Query: 55  TANDSGSQHSGWLHKKSG--RNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEA 111
           + +D      GWLHK+    + W+  +F+LK D     YK           P+  + +  
Sbjct: 2   SMSDVAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQ 61

Query: 112 ---LNEQDNFKYVFQLKHQGQ---DPLVFGADNEQSYERWMKAMREA 152
              +  +      F ++           F  +  +  E W  A++  
Sbjct: 62  CQLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTV 108

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 16/104 (15%), Positives = 41/104 (39%), Gaps = 9/104 (8%)

Query: 55  TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVM----YKYKASEDIKALLSIPVLGYE 108
           ++  SG    G+L K +     W+  +FVL ++      +  + S + K   ++ + G  
Sbjct: 2   SSGSSGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAV 61

Query: 109 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           +   +E  +    F +     +     A + +  + W+  ++  
Sbjct: 62  ISPSDEDSH---TFTVNAASGEQYKLRATDAKERQHWVSRLQIC 102

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A* Length = 173

 Score = 63.2 bits (153), Expect = 2e-13
 Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 5/86 (5%)

Query: 73  RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLK---HQ 127
           + +K+YW   KD  +  YK+ E+        + + G E+         K+  +L     +
Sbjct: 64  KGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAE 123

Query: 128 GQDPLVFGADNEQSYERWMKAMREAT 153
           G + +    DNE+ Y  WM A R A+
Sbjct: 124 GMNEIWLRCDNEKQYAHWMAACRLAS 149

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1 Length = 123

 Score = 61.9 bits (150), Expect = 3e-13
 Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 59  SGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPV 104
           SG Q  G L +K          + R+W+  + VL+   +  YK    AS  +     +PV
Sbjct: 6   SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPV 65

Query: 105 LGYELEALNEQDNFK--YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
                +     D  K  +VF+L  Q     +F A +E     W++ +  A    
Sbjct: 66  SLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIASG 119

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A Length = 125

 Score = 59.7 bits (144), Expect = 2e-12
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 64  SGWLHKKSGR----NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE-QDNF 118
            GWL   +        K YWFVL  + +  YK  E+ +    + V   +L  + +   + 
Sbjct: 15  KGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSS 74

Query: 119 KYVFQLKHQGQ-------DPLVFGADNEQSYERWMKAMREA 152
           K++F L +  Q         L    + ++  + W  +   A
Sbjct: 75  KHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRA 115

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens} Length = 134

 Score = 59.3 bits (143), Expect = 3e-12
 Identities = 19/125 (15%), Positives = 35/125 (28%), Gaps = 30/125 (24%)

Query: 58  DSGSQHSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDIK---ALLSIPVLGYEL- 109
           +S  +  G+L           W R W VL    +  +   +D K    +  I +      
Sbjct: 2   NSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSR 61

Query: 110 ---EALNEQDNFKYVFQLK-------------------HQGQDPLVFGADNEQSYERWMK 147
               A  E    +  F+L                              AD ++  + WM+
Sbjct: 62  QIEPANREFCARRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQ 121

Query: 148 AMREA 152
            + + 
Sbjct: 122 KLNQV 126

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus} Length = 126

 Score = 58.9 bits (142), Expect = 3e-12
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 20/110 (18%)

Query: 64  SGWLHKK---------SGRNWKRYWFVLKDQVMYKYKASED---------IKALLSIPVL 105
            G L +K         +  +W RYW VL    +  Y A                  + ++
Sbjct: 4   EGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIV 63

Query: 106 GYELEALNEQDNFKYVFQLKH-QGQDPLVFGADNEQSYERWMKAMREATT 154
           G+ ++  ++ ++   +FQL +    +   F   +      W K + +A  
Sbjct: 64  GWMVQLPDDPEH-PDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDACK 112

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A Length = 103

 Score = 57.9 bits (140), Expect = 4e-12
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 7/93 (7%)

Query: 64  SGWLHKKSG--RNWKRYWFVLKDQVMY--KYKASEDIKALLSIPVLGYELEALNEQDNFK 119
            G L+K +     W+  WFVL + ++     +      +  SI +   E++  +  +   
Sbjct: 2   EGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTR- 60

Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
              +L   G+      A N    +RW+ A+  +
Sbjct: 61  --MELIIPGEQHFYMKAVNAAERQRWLVALGSS 91

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A Length = 263

 Score = 60.4 bits (145), Expect = 7e-12
 Identities = 23/111 (20%), Positives = 43/111 (38%), Gaps = 20/111 (18%)

Query: 62  QHSGWLHKK--------------SGRNWKRYWFVLKDQVMYKYKASEDIKALLS------ 101
           + +GWL  K              + R WK+YW  LK   +  Y+         +      
Sbjct: 12  RKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCA 71

Query: 102 IPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           +      ++++ E    ++VF L +   D  +F A ++   E W+ A+  A
Sbjct: 72  LFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSA 122

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A Length = 106

 Score = 56.5 bits (136), Expect = 2e-11
 Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 16/104 (15%)

Query: 65  GWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIP------VLGYE 108
           G+L++K          S R+W   + V+ +Q M  YK ++   + +         +    
Sbjct: 3   GFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAI 62

Query: 109 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
            E   +    K+VF+L+    +  +F A +++    W++A+  A
Sbjct: 63  CEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens} Length = 94

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 64  SGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYV 121
            G L K +     W+  W VLK+  +  Y  SED         +      +   D  +  
Sbjct: 4   CGVLSKWTNYIHGWQDRWVVLKNNALS-YYKSEDETEYGCRGSICLSKAVITPHDFDECR 62

Query: 122 FQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
           F +           A +    ++W+ A+ +  T
Sbjct: 63  FDISVNDSV-WYLRAQDPDHRQQWIDAIEQHKT 94

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens} Length = 164

 Score = 53.6 bits (128), Expect = 7e-10
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 15/105 (14%)

Query: 63  HSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDIKALL-SIP------VLGYE 108
               L K+S         N+K   FVL   ++  Y+   + K     I       V   +
Sbjct: 17  LEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVK 76

Query: 109 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
            +        KY FQ+ H   + L   A + QS + W+K ++E  
Sbjct: 77  NDDGVIPCQNKYPFQVVHD-ANTLYIFAPSPQSRDLWVKKLKEEI 120

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A Length = 385

 Score = 53.1 bits (126), Expect = 3e-09
 Identities = 18/158 (11%), Positives = 58/158 (36%), Gaps = 8/158 (5%)

Query: 1   MFERIKAVANVEDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSG 60
           + E+++               ++         T    + +            +   N + 
Sbjct: 218 LNEQLEEFLANIGTSVQNVRREMDSDIETMQQTIEDLEVASDPLYVPDPDPTKFPVNRNL 277

Query: 61  SQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 115
           ++ +G+L+ ++        W R ++  +   +       D+   L++ +    + A++ +
Sbjct: 278 TRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARG-DVAGGLAMDIDNCSVMAVDCE 336

Query: 116 DNFKYVFQLK-HQGQDPLVFGADNEQSYERWMKAMREA 152
           D  +Y FQ+    G+   +  A++++ +E W+  +   
Sbjct: 337 DR-RYCFQITSFDGKKSSILQAESKKDHEEWICTINNI 373

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C* Length = 386

 Score = 52.4 bits (125), Expect = 7e-09
 Identities = 15/101 (14%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 63  HSGWLHKKSGRN---WKRYWFVLKDQVMYKYKASEDIKALLSIPV----LGYELEALN-- 113
             G++ K   +    +++ WF + D+ +  +K   D  A   + +     GY +      
Sbjct: 271 KEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPP 330

Query: 114 --EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
             +  ++ +   +    +   +F  + E     W+ A ++A
Sbjct: 331 STQGHHWPHGITIVTPDRK-FLFACETESDQREWVAAFQKA 370

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1 Length = 132

 Score = 49.9 bits (119), Expect = 9e-09
 Identities = 17/94 (18%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 63  HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALL---SIPVLGYELEALNEQDNFK 119
               +   +    +  +F+L   V+    AS  +   +    IP+ G  +  L+E +   
Sbjct: 32  SQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSD 91

Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
            +F++     + +V   +N Q ++ WM+ +   T
Sbjct: 92  CMFEITGSTVERIVVHCNNNQDFQEWMEQLNRLT 125

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A* Length = 264

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 55  TANDSGSQHSGWLHKKSGRNWKRYWFVLKDQ-------VMYKYKASEDIKALLSIPVLGY 107
           +   S  +  G+L K   ++  + +FVL+          +  Y+  +  +   S P    
Sbjct: 4   SDGFSDVRKVGYLRKP--KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSI 61

Query: 108 ELE-----ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
            LE             K++  L  +  +     AD+E   + W +A+ + 
Sbjct: 62  PLESCFNINKRADSKNKHLVALYTR-DEHFAIAADSEAEQDSWYQALLQL 110

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens} Length = 256

 Score = 48.3 bits (114), Expect = 2e-07
 Identities = 22/117 (18%), Positives = 42/117 (35%), Gaps = 15/117 (12%)

Query: 51  LIEVTANDSGSQHSGWLHKKSGR--NWKRYWFVLKDQVMY-----KYKASEDIKALLSIP 103
           L     + S  +  G+LH K     +WK+ +  L+   +Y        A   ++ L  + 
Sbjct: 122 LQNFLNSSSSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLE 181

Query: 104 VLG-YELEAL--NEQDNFKYVFQLKHQG-----QDPLVFGADNEQSYERWMKAMREA 152
               + L A          +   +K        ++  +  A++EQ+   WM A R  
Sbjct: 182 DSNIFSLIAGRKQYNAPTDHGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLL 238

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A Length = 124

 Score = 45.6 bits (107), Expect = 3e-07
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 12/100 (12%)

Query: 66  WLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLS---------IPVLGYELEALNEQD 116
           ++     + W R++  + D  +      E      +         + +  Y +    +  
Sbjct: 19  YMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGK 78

Query: 117 NFK-YVFQLKHQGQD--PLVFGADNEQSYERWMKAMREAT 153
           N K +VF L+ + Q   P+ F  D  +    W +++RE T
Sbjct: 79  NQKSFVFILEPKQQGDPPVEFATDKVEELFEWFQSIREIT 118

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A* Length = 169

 Score = 45.7 bits (107), Expect = 6e-07
 Identities = 21/127 (16%), Positives = 41/127 (32%), Gaps = 38/127 (29%)

Query: 64  SGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASED----IKALLSIPV-------- 104
                K+S         N+K+  F+L    +  Y+   +         SI V        
Sbjct: 6   ESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVET 65

Query: 105 ------------------LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWM 146
                                E+E ++  + F Y FQ+ +  + PL   +  E+  +RW+
Sbjct: 66  VVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVY-DEGPLYVFSPTEELRKRWI 124

Query: 147 KAMREAT 153
             ++   
Sbjct: 125 HQLKNVI 131

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens} Length = 128

 Score = 44.1 bits (103), Expect = 2e-06
 Identities = 16/116 (13%), Positives = 32/116 (27%), Gaps = 27/116 (23%)

Query: 64  SGWLHKKSGR----NWKRYWFVLKDQVMYKYKASED-----------------IKALLSI 102
             +L K+SG      WK+ +  L       Y  S +                 +K     
Sbjct: 7   QSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKR 66

Query: 103 PVLGYELEA------LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           P                + +   + F +         F A + +  + W++A+   
Sbjct: 67  PPRAISAFGPSASGSAGQAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQ 122

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A Length = 354

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 17/169 (10%), Positives = 53/169 (31%), Gaps = 17/169 (10%)

Query: 3   ERIKAVANV--EDNHQVTNMMDIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSG 60
             +  V +   +   +      +  S  +      + K     +    Q+ I+       
Sbjct: 181 TALLNVQSGMEKICSKSLAKRRLSESACRFYSQQMKGKQLAIKKMNEIQKNIDGWEGKDI 240

Query: 61  SQHSGWLHK-----KSGRNWKRYWFVLKDQVMY------KYKASEDIKALLS----IPVL 105
            Q            + G   +R+ F+    ++       + +      A         + 
Sbjct: 241 GQCCNEFIMEGTLTRVGAKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMR 300

Query: 106 GYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
             ++   ++ + +K+ F++  + ++ ++F A + +    WM A+     
Sbjct: 301 KVQINDKDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY 349

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 56  ANDSGSQHSGWLHKKSG--RNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEA- 111
            +D      GWLHK+    + W+  +F+LK D     YK           P+  + +   
Sbjct: 1   GSDVAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQC 60

Query: 112 --LNEQDNFKYVF---QLKHQGQDPLVFGADNEQSYERWMKAMRE 151
             +  +      F    L+        F  +  +  E W  A++ 
Sbjct: 61  QLMKTERPRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQT 105

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus} Length = 117

 Score = 38.9 bits (90), Expect = 1e-04
 Identities = 15/113 (13%), Positives = 44/113 (38%), Gaps = 21/113 (18%)

Query: 61  SQHSGWLH--KKSGR---NWKRYWFVLKDQVMYKYKASEDIKALLSIPVL----GYELEA 111
           S+  GWL    ++      W + + ++  + +  Y + +D +      VL     + +  
Sbjct: 1   SRLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRP 60

Query: 112 LNEQD-------NFKYVFQLKHQGQDP-----LVFGADNEQSYERWMKAMREA 152
           + + D           +FQ+ +  +       L+  A++ +  ++W+  + + 
Sbjct: 61  VTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
1wi1_A	126	Calcium-dependent activator protein for secretion,	99.93
1wgq_A	109	FYVE, rhogef and PH domain containing 6; ethanol d	99.93
1v88_A	130	Oxysterol binding protein-related protein 8; vesic	99.92
2coc_A	112	FYVE, rhogef and PH domain containing protein 3; s	99.91
3cxb_B	112	Pleckstrin homology domain-containing family M mem	99.91
2p0d_A	129	RHO GTPase-activating protein 9; protein-phosphoin	99.91
1pls_A	113	Pleckstrin homology domain; phosphorylation; NMR {	99.91
1dyn_A	125	Dynamin; signal transduction protein; 2.20A {Homo	99.91
1x1f_A	149	Signal-transducing adaptor protein 1; docking prot	99.91
4a6h_A	120	Phosphatidylinositol 4,5-bisphosphate-binding Pro	99.91
2dkp_A	128	Pleckstrin homology domain-containing family A mem	99.9
2i5f_A	109	Pleckstrin; PH domain, protein-inositol phosphate	99.89
1v89_A	118	Hypothetical protein KIAA0053; pleckstrin homology	99.89
2yry_A	122	Pleckstrin homology domain-containing family A mem	99.89
1u5d_A	108	SKAP55, SRC kinase-associated phosphoprotein of 55	99.89
2dhk_A	119	TBC1 domain family member 2; PH domain, paris-1, s	99.89
1fao_A	126	Dual adaptor of phosphotyrosine and 3- phosphoinos	99.89
2d9y_A	117	Pleckstrin homology domain-containing protein fami	99.89
1upq_A	123	PEPP1; PH domain, phosphoinositide binding, signal	99.89
1v5p_A	126	Pleckstrin homology domain-containing, family A; T	99.89
2dn6_A	115	KIAA0640 protein; PH domain, structural genomics,	99.89
1wjm_A	123	Beta-spectrin III; PH domain, signal transduction,	99.89
3pp2_A	124	RHO GTPase-activating protein 27; PH domain, GTPas	99.89
1x05_A	129	Pleckstrin; PH domain, structural genomics, NPPSFA	99.88
2d9v_A	130	Pleckstrin homology domain-containing protein fami	99.88
2cof_A	107	Protein KIAA1914; PH domain, structural genomics,	99.88
1fgy_A	127	GRP1; PH domain, signaling protein; HET: 4IP; 1.50	99.88
2w2x_D	124	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.88
1u5f_A	148	SRC-associated adaptor protein; PH domain of SKAP-	99.88
2rsg_A	94	Collagen type IV alpha-3-binding protein; pleckstr	99.88
2cod_A	115	Centaurin-delta 1; ARF GAP and RHO GAP with ankyri	99.88
1btn_A	106	Beta-spectrin; signal transduction protein; HET: I	99.88
1v5u_A	117	SBF1, SET binding factor 1; MTMR5, the pleckstrin	99.88
3aj4_A	112	Pleckstrin homology domain-containing family B ME;	99.88
3rcp_A	103	Pleckstrin homology domain-containing family A ME;	99.88
2dtc_A	126	RAL guanine nucleotide exchange factor ralgps1A; P	99.87
1eaz_A	125	Tandem PH domain containing protein-1; lipid-bindi	99.87
1wg7_A	150	Dedicator of cytokinesis protein 9; pleckstrin hom	99.87
1dro_A	122	Beta-spectrin; cytoskeleton; NMR {Drosophila melan	99.87
2d9x_A	120	Oxysterol binding protein-related protein 11; PH d	99.87
1btk_A	169	Bruton'S tyrosine kinase; transferase, PH domain,	99.87
1u5e_A	211	SRC-associated adaptor protein; novel dimerization	99.86
1x1g_A	129	Pleckstrin 2; PH domain, structural genomics, rike	99.86
2da0_A	114	130-kDa phosphatidylinositol 4,5-biphosphate- depe	99.86
1unq_A	125	RAC-alpha serine/threonine kinase; transferase, pl	99.86
2lul_A	164	Tyrosine-protein kinase TEC; structural genomics,	99.85
2j59_M	168	RHO-GTPase activating protein 10; ARF, ARF1, ARFBD	99.85
3a8p_A	263	T-lymphoma invasion and metastasis-inducing protei	99.85
2y7b_A	134	Actin-binding protein anillin; cell cycle; 1.90A {	99.85
2rlo_A	128	Centaurin-gamma 1; split PH domain, alternative sp	99.83
1qqg_A	264	IRS-1, insulin receptor substrate 1; beta-sandwhic	99.83
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	99.82
2r09_A	347	Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-ph	99.82
2q13_A	385	DCC-interacting protein 13 alpha; APPL1, BAR domai	99.79
2ys3_A	137	UNC-112-related protein 2; PH domain, kindlin-3, s	99.78
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.78
3a8n_A	279	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.77
3lju_X	386	ARF-GAP with dual PH domain-containing protein 1;	99.77
3tca_A	291	Amyloid beta A4 precursor protein-binding family 1	99.75
4h8s_A	407	DCC-interacting protein 13-beta; BAR domain, pleck	99.75
2fjl_A	150	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.74
2rov_A	117	RHO-associated protein kinase 2; ATP-binding, coil	99.73
4f7h_A	173	Fermitin family homolog 2; beta-barrel, membrane b	99.71
4bbk_A	165	Kindlin-1, fermitin family homolog 1; PH domain, c	99.69
3hk0_A	256	Growth factor receptor-bound protein 10; GRB10, RA	99.61
2d9w_A	127	Docking protein 2; PH domain, structural genomics,	99.57
4gmv_A	281	RAS-associated and pleckstrin homology domains-CO	99.57
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.56
1w1g_A	151	HPDK1, 3-phosphoinositide dependent protein kinase	99.42
2coa_A	125	Protein kinase C, D2 type; protein kinase D2, PH d	99.39
2d9z_A	129	Protein kinase C, NU type; PH domain, structural g	99.33
1v61_A	132	RAC/CDC42 guanine nucleotide exchange factor (GEF)	98.8
3ml4_A	224	Protein DOK-7; tyrosine phosphorylation, adapter p	98.77
1v5m_A	136	SH2 and PH domain-containing adapter protein APS;	98.65
1zc3_B	113	Exocyst complex protein EXO84; exocytosis, small G	98.58
3tfm_A	228	Myosin X; split PH domain, motor protein; 2.53A {R	98.48
1mai_A	131	Phospholipase C delta-1; pleckstrin, inositol tris	98.4
1dbh_A	354	Protein (human SOS 1); guanine nucleotide exchange	98.21
3mpx_A	434	FYVE, rhogef and PH domain-containing protein 5; s	98.2
2lg1_A	185	A-kinase anchor protein 13; metal binding protein;	98.13
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.05
3qwm_A	140	Iqsec1, IQ motif and SEC7 domain-containing protei	98.01
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	97.99
2dfk_A	402	Collybistin II; DH domain, PH domain, cell cycle;	97.92
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	97.9
3t06_A	418	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.78
1xcg_A	368	PDZ-rhogef, RHO guanine nucleotide exchange factor	97.7
1txd_A	385	RHO guanine nucleotide exchange factor 12; helical	97.67
2z0q_A	346	XPLN, RHO guanine nucleotide exchange factor 3; DH	97.65
3odw_A	536	RHO guanine nucleotide exchange factor 1; regulati	97.64
3p6a_A	377	RHO guanine nucleotide exchange factor 1; regulati	97.6
3ky9_A	587	Proto-oncogene VAV; calponin homology domain, DBL	97.6
3ksy_A	1049	SOS-1, SON of sevenless homolog 1; RAS, RAS activa	97.59
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	97.42
1nty_A	311	Triple functional domain protein; DBL, pleckstrin,	97.32
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	97.22
1kz7_A	353	Guanine nucleotide exchange factor DBS; guanine nu	97.16
2rgn_B	354	RHOA/RAC/CDC42 exchange factor; heterotrimeric G-p	97.1
1foe_A	377	T-lymphoma invasion and metastasis inducing protei	96.39
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	95.71
2adz_A	178	Alpha-1-syntrophin; protein binding; NMR {Mus musc	95.02
1fho_A	119	UNC-89; pleckstrin homology domain, electrostatics	94.38
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	92.87
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	90.28
3a98_B	203	Engulfment and cell motility protein 1; protein-pr	89.46
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	85.32
3hie_A	171	Protein PSL1, exocyst complex component SEC3; PH d	82.7
3a58_A	320	Exocyst complex component SEC3; protein complex, P	81.08

>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.93  E-value=2.4e-25  Score=145.96  Aligned_cols=97  Identities=26%  Similarity=0.477  Sum_probs=83.3

Q ss_pred             CCCCcEEEEEEeccC---CCceEEEEEEeCCeEEEEc----cCCCcccceEEEccCeEEEEc---cCCCCceeEEEEEeC
Q psy2209          58 DSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYK----ASEDIKALLSIPVLGYELEAL---NEQDNFKYVFQLKHQ  127 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk----~~~~~~~~~~i~L~~~~~~~~---~~~~~~~~~f~i~~~  127 (156)
                      ++++.++|||+|+|+   |.|++|||||++..|+||+    ++.+..|.|.|+|.++++...   ++...++++|.+.++
T Consensus         5 p~n~~~~G~L~KqG~~~~K~WKrRwFVL~~~~LyYfk~~~~~~~~~~p~G~I~L~g~tV~~~~~~~~~~~~k~~F~~v~~   84 (126)
T 1wi1_A            5 SSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAVKE   84 (126)
T ss_dssp             CCCEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEECS
T ss_pred             CCCCceeEEEEEeCCCcccccceEEEEEeCCEEEEEEcccccccCCCCceEEECCCcEEEEecCCcccccCceEEEEecC
Confidence            445679999999986   6999999999999999999    888889999999999998753   222346799999855


Q ss_pred             CCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         128 GQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       128 ~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                       +++|+|+|+|++|+..||.||..|+.-
T Consensus        85 -~~ty~~~Adseee~~~WikAi~~A~~~  111 (126)
T 1wi1_A           85 -GDTVIFASDDEQDRILWVQAMYRATGQ  111 (126)
T ss_dssp             -SCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             -CceEEEEcCCHHHHHHHHHHHHHHhcc
Confidence             556999999999999999999999853

>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.93  E-value=1.1e-24  Score=140.87  Aligned_cols=98  Identities=43%  Similarity=0.797  Sum_probs=87.6

Q ss_pred             CCCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEE
Q psy2209          58 DSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      +..+.++|||.|+++  +.|++|||||.++.|+||+++.+..+.+.|+|.++.+....+...++++|.|.+++.++|+|+
T Consensus         5 ~~~~~~~G~L~K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~   84 (109)
T 1wgq_A            5 SSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFK   84 (109)
T ss_dssp             CCSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTCSSCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEEE
T ss_pred             CCCCeEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCcCccCceEECCCCEEEECCCCCCCCcEEEEEeCCCeEEEEE
Confidence            455789999999976  699999999999999999999988999999999999888766555679999997777889999


Q ss_pred             cCCHHHHHHHHHHHHHHHhc
Q psy2209         136 ADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~~~  155 (156)
                      |+|++++..||.+|+.|+.-
T Consensus        85 a~s~~e~~~Wi~al~~a~~~  104 (109)
T 1wgq_A           85 ADDAHSTQRWIDAFQEGTVS  104 (109)
T ss_dssp             CSSHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHhcc
Confidence            99999999999999998753

>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.92  E-value=1.4e-24  Score=144.70  Aligned_cols=98  Identities=23%  Similarity=0.410  Sum_probs=82.8

Q ss_pred             cCCCCcEEEEEEeccC-CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCC------
Q psy2209          57 NDSGSQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ------  129 (156)
Q Consensus        57 ~~~~~~~~G~L~k~~~-k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~------  129 (156)
                      ++..+.++|||.|++. +.|++|||||+++.|+||+++.+..+.|.|+|.++.+...+. ..++++|.|.++..      
T Consensus         4 ~~~~v~k~GwL~K~g~~k~WkrRWfVLk~~~L~yyk~~~~~~p~G~I~L~~~~v~~~~~-~~~~~~F~i~~~~~~~i~~~   82 (130)
T 1v88_A            4 GSSGIVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPS-KKDGFCFKLFHPLEQSIWAV   82 (130)
T ss_dssp             SSSSCCEEEEEEECCSSSSCEEEEEEEETTEEEEESCSSSCCCCEEEECSSCEECCCCT-TTSSCEEEEECTTCCCCSCS
T ss_pred             CCCceEEEeEEEEeCCCCCceEEEEEEECCEEEEECCCCCCCceEEEEcCCCEEEECCC-CCCCeEEEEEcCCccccccc
Confidence            3455789999999874 599999999999999999999999999999999999854432 33569999986543      


Q ss_pred             -----------------ccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         130 -----------------DPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       130 -----------------~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                                       +.|+|+|+|++++++||.||+.|..+
T Consensus        83 ~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~  125 (130)
T 1v88_A           83 KGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKS  125 (130)
T ss_dssp             SCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHTT
T ss_pred             cCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHHhc
Confidence                             34899999999999999999998765

>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.91  E-value=6.3e-24  Score=137.98  Aligned_cols=95  Identities=20%  Similarity=0.341  Sum_probs=81.5

Q ss_pred             CCCcEEEEEEeccC-CCceEEEEEEeCC---eEEEEccCCCcccceEEEccCeEEEEc--cCCCCceeEEEEEeCCCccE
Q psy2209          59 SGSQHSGWLHKKSG-RNWKRYWFVLKDQ---VMYKYKASEDIKALLSIPVLGYELEAL--NEQDNFKYVFQLKHQGQDPL  132 (156)
Q Consensus        59 ~~~~~~G~L~k~~~-k~Wk~r~~vL~~~---~L~~yk~~~~~~~~~~i~L~~~~~~~~--~~~~~~~~~f~i~~~~~~~~  132 (156)
                      .+..++|||++++. +.|++|||||.++   .||||+++.+..+.+.|+|.++++...  .+...++++|+|. ...++|
T Consensus         6 ~~~~~~G~L~k~~~~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~-~~~~~y   84 (112)
T 2coc_A            6 SGSLLCGPLRLSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQ-WAKQSW   84 (112)
T ss_dssp             SSSSSEEEEEEESSSSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEE-ETTEEE
T ss_pred             CCceEEEEEEecCCCCCceEEEEEEECCCccEEEEECCCCccCcceEEEcCCCEEEecCcccccCCCCEEEEe-cCCeEE
Confidence            34568899999765 6999999999984   799999999999999999999999852  2333467999999 556789


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHh
Q psy2209         133 VFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       133 ~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +|+|+|++++..||.+|+.|+.
T Consensus        85 ~f~A~s~e~~~~Wl~al~~A~~  106 (112)
T 2coc_A           85 YLSASSAELQQQWLETLSTAAH  106 (112)
T ss_dssp             EEEESSHHHHHHHHHHHHHHHS
T ss_pred             EEEcCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999874

>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B

Probab=99.91  E-value=1.6e-23  Score=136.32  Aligned_cols=92  Identities=26%  Similarity=0.493  Sum_probs=78.9

Q ss_pred             EEEEEEeccC------CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEE--EccCCCCceeEEEEEeCCCccEEE
Q psy2209          63 HSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELE--ALNEQDNFKYVFQLKHQGQDPLVF  134 (156)
Q Consensus        63 ~~G~L~k~~~------k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~--~~~~~~~~~~~f~i~~~~~~~~~~  134 (156)
                      ++|||.++++      +.|++|||||.++.|+||+++.+..+.+.|+|.+..+.  ...+...++++|+|.+++++.|+|
T Consensus         2 keG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~y~f   81 (112)
T 3cxb_B            2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLEL   81 (112)
T ss_dssp             EEEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCEEE
T ss_pred             ceEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCCCCccceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCEEEE
Confidence            7899997632      58999999999999999999988889999999877554  344555678999999888889999


Q ss_pred             EcCCHHHHHHHHHHHHHHHh
Q psy2209         135 GADNEQSYERWMKAMREATT  154 (156)
Q Consensus       135 ~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +|+|++++++||.+|+.|+.
T Consensus        82 ~A~s~ee~~~Wi~ai~~~~~  101 (112)
T 3cxb_B           82 SAESEAEMAEWMQHLCQAVS  101 (112)
T ss_dssp             ECSSHHHHHHHHHHHHHHHT
T ss_pred             EcCCHHHHHHHHHHHHHHhh
Confidence            99999999999999998764

>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*

Probab=99.91  E-value=2.1e-23  Score=138.94  Aligned_cols=97  Identities=19%  Similarity=0.377  Sum_probs=82.3

Q ss_pred             CCCCcEEEEEEec-----cC---CCceEEEEEEeCCeEEEEccCC-----------CcccceEEEccCeEEEEccCCCCc
Q psy2209          58 DSGSQHSGWLHKK-----SG---RNWKRYWFVLKDQVMYKYKASE-----------DIKALLSIPVLGYELEALNEQDNF  118 (156)
Q Consensus        58 ~~~~~~~G~L~k~-----~~---k~Wk~r~~vL~~~~L~~yk~~~-----------~~~~~~~i~L~~~~~~~~~~~~~~  118 (156)
                      +..+.++|||.|+     |+   +.|++|||||.++.|+||+++.           +..|.+.|+|.++.+....+..++
T Consensus         9 ~~~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~kr   88 (129)
T 2p0d_A            9 SHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSR   88 (129)
T ss_dssp             CCSEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTSCSS
T ss_pred             CcceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCCCCC
Confidence            3457799999985     32   6999999999999999999984           457899999999998876666667


Q ss_pred             eeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         119 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       119 ~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +++|.|.+++++.|+|+|+|++++++||.+|+.++.
T Consensus        89 ~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i~  124 (129)
T 2p0d_A           89 RNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIE  124 (129)
T ss_dssp             SSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHHH
Confidence            899999977778899999999999999999998864

>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.91  E-value=3.3e-23  Score=134.66  Aligned_cols=95  Identities=24%  Similarity=0.425  Sum_probs=84.2

Q ss_pred             CCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEE-ccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          60 GSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA-LNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        60 ~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~-~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      .+.++|||.|+++  +.|++|||+|.++.|+||+++.+..+.+.|+|.++.++. ..+...++++|.|.++++++|+|+|
T Consensus         4 ~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a   83 (113)
T 1pls_A            4 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQA   83 (113)
T ss_dssp             CCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEEC
T ss_pred             CCcEEEEEEEeCCCCCCceEEEEEEECCEEEEEeCCCCCCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCEEEEEC
Confidence            4679999999986  699999999999999999999888999999999998875 3344557799999977778999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q psy2209         137 DNEQSYERWMKAMREATT  154 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a~~  154 (156)
                      +|.+++..|+.+|+.++.
T Consensus        84 ~s~~e~~~Wi~ai~~~~~  101 (113)
T 1pls_A           84 AFLEERDAWVRDINKAIK  101 (113)
T ss_dssp             SSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHh
Confidence            999999999999998864

>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A

Probab=99.91  E-value=3e-23  Score=134.72  Aligned_cols=93  Identities=24%  Similarity=0.453  Sum_probs=81.1

Q ss_pred             CcEEEEEEecc-C--C-CceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCC-CCceeEEEEEeCCC------
Q psy2209          61 SQHSGWLHKKS-G--R-NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ-DNFKYVFQLKHQGQ------  129 (156)
Q Consensus        61 ~~~~G~L~k~~-~--k-~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~-~~~~~~f~i~~~~~------  129 (156)
                      +++.|||.++. +  + .|++|||||++.+|+||+++.+..+.|.|+|.+..+..+.+. ..++++|.|.++++      
T Consensus        12 VirkGWL~k~~~g~~k~~wk~rWFVLt~~~L~yyKd~~eke~~G~IpL~~~~vr~v~~~~~~rk~~F~l~~~d~r~v~~~   91 (125)
T 1dyn_A           12 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKD   91 (125)
T ss_dssp             EEEEEEEEESCCCGGGTSSEEEEEEEESSEEEEESSTTCSCEEEEEECTTEEEEECCSCSSSSCEEEEEEETTSSCSSTT
T ss_pred             eEEEEEEEEecCccccCCceeeEEEEeccceeeecCCcccccceEEECCCceEeccCCCCCCCceEEEEECCCCcccccc
Confidence            68999999963 3  4 599999999999999999999999999999999998876543 25789999997654      


Q ss_pred             -ccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         130 -DPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       130 -~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                       ++|.|+|+|++++.+|+++|.+|.
T Consensus        92 h~~y~LsA~t~ee~~~Wi~s~~ra~  116 (125)
T 1dyn_A           92 YRQLELACETQEEVDSWKASFLRAG  116 (125)
T ss_dssp             CSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred             ceEEEEeCCCHHHHHHHHHHHHhCc
Confidence             499999999999999999997764

>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.91  E-value=3e-23  Score=141.09  Aligned_cols=94  Identities=18%  Similarity=0.325  Sum_probs=81.7

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC-CCCceeEEEEEeCCCccEEEEcC
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE-QDNFKYVFQLKHQGQDPLVFGAD  137 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~-~~~~~~~f~i~~~~~~~~~~~a~  137 (156)
                      +.++|||.|+++  +.|++|||||+++.|+||+++.+..+.+.|+|.++.+..... ...+.++|.|. +..++|+|+|+
T Consensus        18 v~keG~L~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~-t~~r~~~f~A~   96 (149)
T 1x1f_A           18 LYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLV-LPKEEVQLKTE   96 (149)
T ss_dssp             EEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCTTSCCCEEEEE-CSSCCEEEECS
T ss_pred             ccEEEEEEEeCCCCCCceeEEEEEcCCEEEEEeCCCccccCcEEECCCceEEeeccCCCCcCcEEEEE-cCCCEEEEEcC
Confidence            679999999986  599999999999999999999999999999999987764322 22346899998 66788999999


Q ss_pred             CHHHHHHHHHHHHHHHhc
Q psy2209         138 NEQSYERWMKAMREATTL  155 (156)
Q Consensus       138 s~~~~~~Wi~al~~a~~~  155 (156)
                      |.+++.+||.+|+.++.+
T Consensus        97 s~ee~~eWi~aI~~v~~~  114 (149)
T 1x1f_A           97 NTESGEEWRGFILTVTEL  114 (149)
T ss_dssp             SHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHcc
Confidence            999999999999998765

>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A

Probab=99.91  E-value=3.7e-23  Score=135.96  Aligned_cols=96  Identities=20%  Similarity=0.418  Sum_probs=80.4

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCC---CcccceEEEccCeEEEEccCCCC--------ceeEEEEEeC
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASE---DIKALLSIPVLGYELEALNEQDN--------FKYVFQLKHQ  127 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~---~~~~~~~i~L~~~~~~~~~~~~~--------~~~~f~i~~~  127 (156)
                      ++++|||.|+++  +.|++|||||+++.|+||+++.   +..|.+.|+|.+|++....+...        .++.|.|...
T Consensus         6 ~~k~G~L~Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L~~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~   85 (120)
T 4a6h_A            6 EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTEHSRKNSTSSPNSTGSDAKFVLHAK   85 (120)
T ss_dssp             CSEEEEEEEEETTTTEEEEEEEEECSSEEEEESSCCTTTCCSCSEEEEGGGEEEEEECCCCC---------CCEEEEEES
T ss_pred             ccEEEEEEEcCCCCCCCccEEEEEeCCEEEEEcCCCcCcCCCceEEEECCCCEEEEcccccccccccccCCCcEEEEEeC
Confidence            789999999986  6899999999999999999875   56689999999999988654432        5678888755


Q ss_pred             C------CccEEEEcCCHHHHHHHHHHHHHHHhcC
Q psy2209         128 G------QDPLVFGADNEQSYERWMKAMREATTLS  156 (156)
Q Consensus       128 ~------~~~~~~~a~s~~~~~~Wi~al~~a~~~s  156 (156)
                      .      .+.|+|+|+|.+++++||.+|+.++.+|
T Consensus        86 ~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~~~~~  120 (120)
T 4a6h_A           86 QNGIIRRGHNWVFKADSYESMMSWFDNLKILTSTS  120 (120)
T ss_dssp             SSSSSCTTCEEEEECSSHHHHHHHHHHHHHHCC--
T ss_pred             CCCcccCceEEEEEcCCHHHHHHHHHHHHHHhccC
Confidence            4      3589999999999999999999998775

>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}

Probab=99.90  E-value=2e-22  Score=133.49  Aligned_cols=97  Identities=31%  Similarity=0.594  Sum_probs=84.2

Q ss_pred             CCCcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC--CCCceeEEEEEeCCCccEE
Q psy2209          59 SGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKYVFQLKHQGQDPLV  133 (156)
Q Consensus        59 ~~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~f~i~~~~~~~~~  133 (156)
                      ..+.++|||.|+++   +.|++|||||.++.|+||+++.+..+.+.|+|.++.+.....  ...++++|.|.+++.+.|+
T Consensus        19 ~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~   98 (128)
T 2dkp_A           19 APVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHINRKYAFKAAHPNMRTYY   98 (128)
T ss_dssp             SCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCCSEEEEECGGGSEEEECCGGGCCSSCSEEEEECSSSCCEE
T ss_pred             CCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCCcccceEEEcCceEEEEcCCcccCCCCeEEEEEcCCCCEEE
Confidence            34679999999875   489999999999999999999888999999999998876532  2346799999966678999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHhc
Q psy2209         134 FGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       134 ~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      |+|+|++++..|+.+|+.|+..
T Consensus        99 l~a~s~~e~~~Wi~al~~a~~~  120 (128)
T 2dkp_A           99 FCTDTGKEMELWMKAMLDAALV  120 (128)
T ss_dssp             EECSSHHHHHHHHHHHHHHHSC
T ss_pred             EEcCCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999998753

>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A

Probab=99.89  E-value=2.3e-22  Score=129.65  Aligned_cols=95  Identities=19%  Similarity=0.345  Sum_probs=81.1

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEeCC--eEEEEccCCCcccceEEEccCeEEEEccCCC-----CceeEEEEEeCCC
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQD-----NFKYVFQLKHQGQ  129 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~~~--~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~-----~~~~~f~i~~~~~  129 (156)
                      ..+.++|||.|+++  +.|++|||||.++  .|+||+++.+..+.+.|+|.++.+....+.+     .++++|.|.+++.
T Consensus         5 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~   84 (109)
T 2i5f_A            5 GVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE   84 (109)
T ss_dssp             CCEEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEECTTC
T ss_pred             CceeEEEEEEEcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCccEEEECCCCEEEEccCCcccccCCCceEEEEEeCCC
Confidence            34679999999986  5899999999976  9999999888889999999998876644331     2579999996666


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         130 DPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      +.|+|+|+|.+++..|+.+|+.|+
T Consensus        85 ~~~~l~a~s~~e~~~Wi~ai~~~~  108 (109)
T 2i5f_A           85 VHYFLQAATPKERTEWIKAIQMAS  108 (109)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHh
Confidence            789999999999999999999886

>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=3.6e-22  Score=130.30  Aligned_cols=97  Identities=32%  Similarity=0.630  Sum_probs=84.1

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC--CCCceeEEEEEeC-------
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKYVFQLKHQ-------  127 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~f~i~~~-------  127 (156)
                      ..+.++|||.|+++  +.|++|||||.++.|+||+++.+..+.+.|+|.++.+.....  ...++++|.|.++       
T Consensus         6 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~~   85 (118)
T 1v89_A            6 SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRM   85 (118)
T ss_dssp             SCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCS
T ss_pred             CCCcEEEEEEecCCCCCCccEEEEEEECCEEEEEeCCCCCCceEEEECCCCEEEEcCcCcccCCcceEEEECCccccccC
Confidence            34679999999985  589999999999999999999888899999999998876432  2345799999863       


Q ss_pred             CCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         128 GQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       128 ~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      ..+.|+|+|++.+++..|+.+|+.|+..
T Consensus        86 ~~~~~~l~a~s~~e~~~Wi~al~~~~~~  113 (118)
T 1v89_A           86 GQDSYVLMASSQAEMEEWVKFLRRVAGS  113 (118)
T ss_dssp             SCCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHHHHcc
Confidence            7789999999999999999999998753

>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.7e-22  Score=132.85  Aligned_cols=96  Identities=31%  Similarity=0.685  Sum_probs=83.6

Q ss_pred             CCcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEcc--CCCCceeEEEEEeCCCccEEE
Q psy2209          60 GSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN--EQDNFKYVFQLKHQGQDPLVF  134 (156)
Q Consensus        60 ~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~--~~~~~~~~f~i~~~~~~~~~~  134 (156)
                      .+.++|||.|+++   +.|++|||||.++.|+||+++.+..+.+.|+|.++.+....  +...++++|.|..++.+.|+|
T Consensus        21 ~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l  100 (122)
T 2yry_A           21 PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFF  100 (122)
T ss_dssp             CEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEESTTCCCEECCTTCSCSSSSEEEEECSSSCEEEE
T ss_pred             CccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEECCCCCCCcccEEEcCCCEEEEcCccccCCcccEEEEecCCCcEEEE
Confidence            4679999999873   58999999999999999999999999999999998765542  334567999998677899999


Q ss_pred             EcCCHHHHHHHHHHHHHHHhc
Q psy2209         135 GADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       135 ~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      +|+|++++..||.+|+.|+.+
T Consensus       101 ~a~s~~e~~~Wi~al~~a~~~  121 (122)
T 2yry_A          101 SAESPEEQEAWIQAMGEAARV  121 (122)
T ss_dssp             ECSSHHHHHHHHHHHHHHHCC
T ss_pred             EcCCHHHHHHHHHHHHHHHhc
Confidence            999999999999999999865

>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=1.2e-22  Score=130.58  Aligned_cols=95  Identities=19%  Similarity=0.402  Sum_probs=82.7

Q ss_pred             CCcEEEEEEeccC------CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEcc---CCCCceeEEEEEeCCCc
Q psy2209          60 GSQHSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN---EQDNFKYVFQLKHQGQD  130 (156)
Q Consensus        60 ~~~~~G~L~k~~~------k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~---~~~~~~~~f~i~~~~~~  130 (156)
                      .+.++|||.|+++      +.|++|||+|.++.|+||+++.+..+.+.|+|.++.+...+   ....++++|.|.+++++
T Consensus         2 ~v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~r   81 (108)
T 1u5d_A            2 SVIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRR   81 (108)
T ss_dssp             CEEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSC
T ss_pred             CccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCCCCEEEEecceEEEeCCccccccCCcceEEEEcCCCc
Confidence            4679999999873      58999999999999999999998889999999999987653   23346799999966668


Q ss_pred             cEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         131 PLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       131 ~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +|+|+|+|.+++..|+.+|+.|..
T Consensus        82 ~~~l~a~s~~e~~~Wi~ai~~~i~  105 (108)
T 1u5d_A           82 TYEFTATSPAEARDWVDQISFLLK  105 (108)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999998763

>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=2.9e-22  Score=131.52  Aligned_cols=92  Identities=24%  Similarity=0.492  Sum_probs=80.9

Q ss_pred             CCCcEEEEEEeccC----CCceEEEEEEeCC--eEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccE
Q psy2209          59 SGSQHSGWLHKKSG----RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPL  132 (156)
Q Consensus        59 ~~~~~~G~L~k~~~----k~Wk~r~~vL~~~--~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~  132 (156)
                      ..+.++|||.|+++    +.|++|||||.++  .|+||+++.+..+.|.|+|.++.++...  ...+++|.|. +..++|
T Consensus         6 ~~~~~~G~L~K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~~~~~--~~~~~~F~i~-~~~r~~   82 (119)
T 2dhk_A            6 SGKKLCGYLSKFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCKA--DAEEGIFEIK-TPSRVI   82 (119)
T ss_dssp             SCCCCEEEEEECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCSCSEEEEGGGCEEEECT--TGGGCEEEEE-CSSCCE
T ss_pred             CCCcEEEEEEecCCCCCCCCceeEEEEEECCccEEEEECCCCCcccccEEECCCCEEEecC--CCCCCEEEEE-eCCcEE
Confidence            44679999999985    5899999999998  9999999998899999999999887642  2356899998 568899


Q ss_pred             EEEcCCHHHHHHHHHHHHHHH
Q psy2209         133 VFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       133 ~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      +|+|++++++..||.+|+.|.
T Consensus        83 ~l~a~s~~e~~~Wi~al~~~~  103 (119)
T 2dhk_A           83 TLKAATKQAMLYWLQQLQMKR  103 (119)
T ss_dssp             EEECSSHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHH
Confidence            999999999999999999875

>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A

Probab=99.89  E-value=1.9e-22  Score=133.39  Aligned_cols=96  Identities=18%  Similarity=0.317  Sum_probs=84.1

Q ss_pred             CCCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEE
Q psy2209          58 DSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      ...+.++|||.|+++  +.|++|||||.++.|+||+++.+..+.+.|+|.++..+...+...++++|.|. +.+++|+|+
T Consensus        15 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~-~~~r~~~l~   93 (126)
T 1fao_A           15 PSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLV-FPFRTFYLC   93 (126)
T ss_dssp             CCTTCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSSSSSSEEEEE-ETTEEEEEE
T ss_pred             CCCccEEEEEEEcCCCCCCcccEEEEEECCEEEEeCCCCCCCceeEEEccceEEEEecccCCCCCEEEEE-eCCcEEEEE
Confidence            345789999999985  58999999999999999999988899999999999866655555577999998 567899999


Q ss_pred             cCCHHHHHHHHHHHHHHHh
Q psy2209         136 ADNEQSYERWMKAMREATT  154 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~~  154 (156)
                      |+|.+++..|+.+|+.+..
T Consensus        94 a~s~~e~~~Wi~al~~~i~  112 (126)
T 1fao_A           94 AKTGVEADEWIKILRWKLS  112 (126)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998764

>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=3.8e-22  Score=130.16  Aligned_cols=95  Identities=32%  Similarity=0.686  Sum_probs=83.2

Q ss_pred             CCcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEcc--CCCCceeEEEEEeCCCccEEE
Q psy2209          60 GSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN--EQDNFKYVFQLKHQGQDPLVF  134 (156)
Q Consensus        60 ~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~--~~~~~~~~f~i~~~~~~~~~~  134 (156)
                      .+.++|||.|+++   +.|++|||+|.++.|+||+++.+..+.+.|+|.++.+....  +...++++|.|..++.+.|+|
T Consensus        10 ~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~~~r~~~l   89 (117)
T 2d9y_A           10 PVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFF   89 (117)
T ss_dssp             CCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTTCCSCCEEEECSSCEEEECCTTTTCCCSSEEEEECSSSCEEEE
T ss_pred             CeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEECCCCCCCcCCEEEeCCeEEEEcCccccCCCccEEEEEcCCCcEEEE
Confidence            4679999999873   58999999999999999999999999999999999876543  334567999998677899999


Q ss_pred             EcCCHHHHHHHHHHHHHHHh
Q psy2209         135 GADNEQSYERWMKAMREATT  154 (156)
Q Consensus       135 ~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +|+|++++..||.+|+.|+.
T Consensus        90 ~a~s~~e~~~Wi~al~~~~~  109 (117)
T 2d9y_A           90 SAESPEEQEAWIQAMGEAAR  109 (117)
T ss_dssp             ECSSHHHHHHHHHHHHHTTC
T ss_pred             EcCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999875

>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*

Probab=99.89  E-value=4.5e-22  Score=130.92  Aligned_cols=95  Identities=29%  Similarity=0.625  Sum_probs=83.1

Q ss_pred             CcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC--CCCceeEEEEEeCCCccEEEE
Q psy2209          61 SQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        61 ~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      +.++|||.|+++   +.|++|||||.++.|+||+++.+..+.+.|+|.++.+.....  ...++++|.|.+++.++|+|+
T Consensus        11 ~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~~~r~~~l~   90 (123)
T 1upq_A           11 VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLA   90 (123)
T ss_dssp             EEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEEE
T ss_pred             ceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEECCCCCcccceEEECCCCEEEECCCCccCCCcEEEEEECCCCeEEEEE
Confidence            569999999974   589999999999999999999988999999999998877643  234679999986677999999


Q ss_pred             cCCHHHHHHHHHHHHHHHhc
Q psy2209         136 ADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~~~  155 (156)
                      |+|++++..||.+|+.|+..
T Consensus        91 a~s~~e~~~Wi~al~~a~~~  110 (123)
T 1upq_A           91 ADTLEDLRGWLRALGRASRA  110 (123)
T ss_dssp             CSSHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHhc
Confidence            99999999999999998753

>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.89  E-value=1.4e-22  Score=134.46  Aligned_cols=94  Identities=13%  Similarity=0.326  Sum_probs=76.9

Q ss_pred             CcEEEEEEecc-C--CCceEEEEEEe---CCeEEEEcc----CCCcccceEEEccCe-EEEEcc--CCCCceeEEEEEeC
Q psy2209          61 SQHSGWLHKKS-G--RNWKRYWFVLK---DQVMYKYKA----SEDIKALLSIPVLGY-ELEALN--EQDNFKYVFQLKHQ  127 (156)
Q Consensus        61 ~~~~G~L~k~~-~--k~Wk~r~~vL~---~~~L~~yk~----~~~~~~~~~i~L~~~-~~~~~~--~~~~~~~~f~i~~~  127 (156)
                      ..++|||.|++ +  +.|++|||||+   +..|+||++    +.+..+.|.|+|..+ .+....  ....++++|.|. +
T Consensus        15 ~~~~G~L~K~g~~~~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~-t   93 (126)
T 1v5p_A           15 NRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVIN-A   93 (126)
T ss_dssp             CCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEE-C
T ss_pred             CceEEEEEEeCCCCCCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccCCCCCEEEEEE-C
Confidence            45899999997 3  59999999999   667888898    566788999999884 444432  233456999886 7


Q ss_pred             CCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         128 GQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       128 ~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      +.++|+|+|+|++++.+||.+|+.|+.+
T Consensus        94 ~~r~y~l~A~s~~e~~~Wi~al~~a~~~  121 (126)
T 1v5p_A           94 LSQRYFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             CCEEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            8899999999999999999999998764

>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.89  E-value=4.8e-22  Score=129.30  Aligned_cols=96  Identities=24%  Similarity=0.444  Sum_probs=82.6

Q ss_pred             CCCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeE-EEEccCCCCceeEEEEEeCCCccEEE
Q psy2209          58 DSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYE-LEALNEQDNFKYVFQLKHQGQDPLVF  134 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~-~~~~~~~~~~~~~f~i~~~~~~~~~~  134 (156)
                      ...+.++|||.|+++  +.|++|||||.++.|+||+++.+..+.+.|+|.++. +...++...++++|.|. +.+++|+|
T Consensus         5 ~~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~-~~~r~~~l   83 (115)
T 2dn6_A            5 SSGVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVK-CFDKTFEI   83 (115)
T ss_dssp             CCSCSEEEEEEEECTTSSCEEEEEEEECSSCEEEESSTTCSSEEEEECCCTTCEEEEECCCTTCCSEEEEE-CSSCEEEE
T ss_pred             CCCceEEEEEEecCCCCCCcEEeEEEEECCEEEEeCCCCCcccCcEEEecCcEEEEECCCCCCCeeEEEEE-eCCCEEEE
Confidence            345789999999986  599999999999999999998888899999998754 44554545567999998 66788999


Q ss_pred             EcCCHHHHHHHHHHHHHHHh
Q psy2209         135 GADNEQSYERWMKAMREATT  154 (156)
Q Consensus       135 ~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +|++.+++..|+.+|+.+..
T Consensus        84 ~a~s~~e~~~Wi~ai~~~~~  103 (115)
T 2dn6_A           84 SASDKKKKQEWIQAIHSTIH  103 (115)
T ss_dssp             ECSSHHHHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHHHHHHHH
Confidence            99999999999999998864

>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.89  E-value=3.1e-22  Score=132.02  Aligned_cols=96  Identities=23%  Similarity=0.394  Sum_probs=80.9

Q ss_pred             CCCcEEEEEEecc----------CCCceEEEEEEeCCeEEEEccCCCcc------cceEEEccCeEEEEccCCCCceeEE
Q psy2209          59 SGSQHSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASEDIK------ALLSIPVLGYELEALNEQDNFKYVF  122 (156)
Q Consensus        59 ~~~~~~G~L~k~~----------~k~Wk~r~~vL~~~~L~~yk~~~~~~------~~~~i~L~~~~~~~~~~~~~~~~~f  122 (156)
                      ..+.++|||.|++          .+.|++|||||.++.|+||+++.+..      +...|+|.++.+....+..+++++|
T Consensus         6 ~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~r~~~F   85 (123)
T 1wjm_A            6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVF   85 (123)
T ss_dssp             CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSEE
T ss_pred             CCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEEeecccccCCCCEE
Confidence            3467999999875          35899999999999999999876642      2456888888877776666688999


Q ss_pred             EEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         123 QLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       123 ~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .|.+++++.|+|+|+|++++++||.+|+.++.
T Consensus        86 ~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~~  117 (123)
T 1wjm_A           86 KLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIA  117 (123)
T ss_dssp             EEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            99977778999999999999999999998874

>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}

Probab=99.89  E-value=6.8e-22  Score=130.75  Aligned_cols=96  Identities=21%  Similarity=0.396  Sum_probs=81.3

Q ss_pred             CCCcEEEEEEec-----c----CCCceEEEEEEeCCeEEEEccCCCc------------ccceEEEccCeEEEEcc-CCC
Q psy2209          59 SGSQHSGWLHKK-----S----GRNWKRYWFVLKDQVMYKYKASEDI------------KALLSIPVLGYELEALN-EQD  116 (156)
Q Consensus        59 ~~~~~~G~L~k~-----~----~k~Wk~r~~vL~~~~L~~yk~~~~~------------~~~~~i~L~~~~~~~~~-~~~  116 (156)
                      ..+.++|||.++     |    .+.|+++||||+++.|+||+++.+.            .+.+.|+|.++.+.... +..
T Consensus         6 ~~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d~~   85 (124)
T 3pp2_A            6 KTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKS   85 (124)
T ss_dssp             ---CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGGGC
T ss_pred             CcEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecccccC
Confidence            346799999987     2    2489999999999999999987664            46789999999988875 666


Q ss_pred             CceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         117 NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       117 ~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +++++|.|.+++++.|+|+|+|++++.+||.+|+.|..
T Consensus        86 krk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~aI~  123 (124)
T 3pp2_A           86 SRKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ  123 (124)
T ss_dssp             SSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHh
Confidence            78899999977788999999999999999999999864

>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A

Probab=99.88  E-value=6e-22  Score=131.49  Aligned_cols=96  Identities=19%  Similarity=0.341  Sum_probs=82.8

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEeCC--eEEEEccCCCcccceEEEccCeEEEEccCCC-----CceeEEEEEeCCC
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQD-----NFKYVFQLKHQGQ  129 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~~~--~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~-----~~~~~f~i~~~~~  129 (156)
                      ..+.++|||.|+++  +.|++|||||.++  .|+||+++.+..+.+.|+|.++.+....+.+     .++++|.|.+++.
T Consensus        16 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~   95 (129)
T 1x05_A           16 GVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADE   95 (129)
T ss_dssp             SEEEEEEEEEECCSSCCCCEEEEEEEEETTTEEEEECSSCCSSCSEEEECTTCEEEECCCCCCSSSCSSCSEEEEECTTC
T ss_pred             CCceEEEEEEecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCcceeEEEccCCEEEEccCCccccccCCCeEEEEEcCCC
Confidence            44679999999986  5899999999975  8999999888889999999999887654332     2679999996667


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         130 DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +.|+|+|+|++++..||.+|+.++.
T Consensus        96 ~~~~l~a~s~~e~~~Wi~al~~~~~  120 (129)
T 1x05_A           96 VHYFLQAATPKERTEWIKAIQMASR  120 (129)
T ss_dssp             CCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHH
Confidence            8899999999999999999999875

>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.88  E-value=3.6e-22  Score=133.09  Aligned_cols=97  Identities=23%  Similarity=0.372  Sum_probs=78.4

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEE-eCCeEEEEccCCCcccceEEEccCeE--EEE--------ccCCCCceeEEEEE
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVL-KDQVMYKYKASEDIKALLSIPVLGYE--LEA--------LNEQDNFKYVFQLK  125 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL-~~~~L~~yk~~~~~~~~~~i~L~~~~--~~~--------~~~~~~~~~~f~i~  125 (156)
                      ..+.++|||.|+++  +.|++||||| .++.|+||+++.+..+.+.|.+....  +..        .++...++++|.|.
T Consensus         6 ~~v~~~G~L~K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~~F~I~   85 (130)
T 2d9v_A            6 SGLVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLTVN   85 (130)
T ss_dssp             CCEEEEEEEEEECSSSCCEEEEEEEEETTTEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTTEEEEE
T ss_pred             CceeEEEEEEeecCccCCceeeEEEEccCCEEEEEeCCCCCCcCceEecccceeEEeccccccccCCCCCCCcCcEEEEE
Confidence            44679999999986  6999999999 89999999998887788888775322  211        11233456999999


Q ss_pred             eCCCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         126 HQGQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       126 ~~~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      +.++++|+|+|+|++++..||.+|+.|...
T Consensus        86 ~~~~r~~~l~A~s~~e~~~Wi~al~~a~~~  115 (130)
T 2d9v_A           86 LREGSRLHLCAETRDDAIAWKTALMEANST  115 (130)
T ss_dssp             ETTSCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             eCCCCEEEEEcCCHHHHHHHHHHHHHHHcC
Confidence            767789999999999999999999998753

>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=1.5e-22  Score=130.46  Aligned_cols=96  Identities=19%  Similarity=0.402  Sum_probs=80.0

Q ss_pred             CCCcEEEEEEeccCCCceEEEEEEeCCeEEEEccCCC-cccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcC
Q psy2209          59 SGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED-IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD  137 (156)
Q Consensus        59 ~~~~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~-~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~  137 (156)
                      ..+.++|||.|+..+.|++|||||.++.|+||+++.+ ..+.+.|+|.++.+....+ ..++++|.|..++.++|+|+|+
T Consensus         6 ~~~~~~G~L~K~~~k~Wk~RwfvL~~~~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~-~~~~~~F~i~~~~~r~~~l~A~   84 (107)
T 2cof_A            6 SGLETSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPS-PDHLYSFRILHKGEELAKLEAK   84 (107)
T ss_dssp             CCCTTCCEEEEEETTEEEEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCB-TTBSCEEEEEETTEEEEEEECS
T ss_pred             CCCcEeEEEEEecCCCcceEEEEEECCEEEEEeCCcccCCCeeEEeccceEEEECCC-CCCCeEEEEEeCCCeEEEEEcC
Confidence            3467999999996679999999999999999998765 3446677778887765543 4577999999766889999999


Q ss_pred             CHHHHHHHHHHHHHHHhc
Q psy2209         138 NEQSYERWMKAMREATTL  155 (156)
Q Consensus       138 s~~~~~~Wi~al~~a~~~  155 (156)
                      |++++..||.+|+.|+..
T Consensus        85 s~~e~~~Wi~al~~~~~~  102 (107)
T 2cof_A           85 SSEEMGHWLGLLLSESGS  102 (107)
T ss_dssp             SHHHHHHHHHHHHHHSSC
T ss_pred             CHHHHHHHHHHHHHHHcC
Confidence            999999999999998753

>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*

Probab=99.88  E-value=1.1e-21  Score=129.66  Aligned_cols=94  Identities=24%  Similarity=0.549  Sum_probs=81.9

Q ss_pred             CCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCC---------
Q psy2209          60 GSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG---------  128 (156)
Q Consensus        60 ~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~---------  128 (156)
                      .+.++|||.|+++  +.|++|||||.++.|+||+++.+..+.|.|+|.++.+....+ ..++++|.|..++         
T Consensus         4 ~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~-~~~~~~f~i~~~~~~~~~~~~~   82 (127)
T 1fgy_A            4 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLD-PRKPNCFELYNPSHKGQVIKAC   82 (127)
T ss_dssp             SCSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECC-SSCSSEEEEECSSSTTCCCCCE
T ss_pred             CCceEeEEEEECCCCCCeEEEEEEEECCEEEEeCCCCCCCcceEEECCceEEEEccC-CCCCceEEEecCCccccccccc
Confidence            4679999999986  589999999999999999998888899999999998776644 3567999998553         


Q ss_pred             ------------CccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         129 ------------QDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       129 ------------~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                                  .+.|+|+|+|.+++..||.+|+.+..
T Consensus        83 ~~~~~~~~v~~~~r~~~l~a~s~~e~~~Wi~al~~~i~  120 (127)
T 1fgy_A           83 KTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  120 (127)
T ss_dssp             EECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccCCcceecCCceEEEEECCCHHHHHHHHHHHHHHhc
Confidence                        36899999999999999999998864

>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A

Probab=99.88  E-value=1.5e-22  Score=133.92  Aligned_cols=95  Identities=18%  Similarity=0.302  Sum_probs=78.9

Q ss_pred             CCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCC---------cccceEEEccCeEEEEccCC-CCceeEEEEEeC
Q psy2209          60 GSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASED---------IKALLSIPVLGYELEALNEQ-DNFKYVFQLKHQ  127 (156)
Q Consensus        60 ~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~---------~~~~~~i~L~~~~~~~~~~~-~~~~~~f~i~~~  127 (156)
                      .+.++|||.|++.  +.|++|||||.++.|+||+++.+         ..+.|.|+|.++.+....+. ..++++|+|.++
T Consensus        11 ~~~k~G~L~K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I~~~   90 (124)
T 2w2x_D           11 EHKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFVFILEPK   90 (124)
T ss_dssp             --CCEEEEEEEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCBTTBSEEEEEEEC
T ss_pred             hcceeEEEEEECCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccCCcCCCCEEEEEECC
Confidence            4679999999985  68999999999999999997532         22489999999998876542 457799999865


Q ss_pred             C--CccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         128 G--QDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       128 ~--~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .  .++|+|+|+|.+++.+||.+|+.|+.
T Consensus        91 ~~~~~~~~~~A~s~ee~~~Wi~ai~~a~~  119 (124)
T 2w2x_D           91 QQGDPPVEFATDKVEELFEWFQSIREITW  119 (124)
T ss_dssp             C--CCCEEEEECCCHHHHHHHHHHHHHHC
T ss_pred             CCCCceEEEEECCHHHHHHHHHHHHHHHH
Confidence            4  46899999999999999999999875

>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A

Probab=99.88  E-value=1e-21  Score=133.48  Aligned_cols=96  Identities=19%  Similarity=0.403  Sum_probs=83.5

Q ss_pred             CCCcEEEEEEeccC------CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC---CCCceeEEEEEeCCC
Q psy2209          59 SGSQHSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE---QDNFKYVFQLKHQGQ  129 (156)
Q Consensus        59 ~~~~~~G~L~k~~~------k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~---~~~~~~~f~i~~~~~  129 (156)
                      ..+.++|||.|+++      +.|++|||||.++.|+||+++.+..+.|.|+|.++.+...++   ..+++++|.|.++++
T Consensus        15 ~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~~~   94 (148)
T 1u5f_A           15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK   94 (148)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTS
T ss_pred             CCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcccceEEEcCCcEEEECCCcccCCCCccEEEEECCCC
Confidence            45679999999974      489999999999999999999888899999999998876543   334569999996666


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         130 DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      ++|+|+|+|.+++..||.+|+.|..
T Consensus        95 r~~~l~a~s~~e~~~Wi~al~~~i~  119 (148)
T 1u5f_A           95 RIYQFTAASPKDAEEWVQQLKFILQ  119 (148)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             cEEEEECCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999998753

>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}

Probab=99.88  E-value=3.7e-22  Score=125.70  Aligned_cols=88  Identities=18%  Similarity=0.351  Sum_probs=76.0

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCc--ccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~--~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      +.++|||+|+++  +.|++|||||.++.|+||+++.+.  .+.+.|+|.++.+.....   .+++|.|. +++++|+|+|
T Consensus         1 V~k~G~L~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~~~~~i~l~~~~~~~~~~---~~~~F~i~-~~~r~~~l~A   76 (94)
T 2rsg_A            1 VERCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDF---DECRFDIS-VNDSVWYLRA   76 (94)
T ss_dssp             CCEEEEEEEESSSTTCEEEEEEEEETTEEEEESSTTGGGTCCSEEEETTTCEEEECSS---CSSEEEEE-ETTEEEEEEC
T ss_pred             CCEEEEEEEeCCCCCCceEEEEEEECCEEEEEEecccccccceeeEecceeeeecCcc---cceeEEEE-eCCeEEEEEC
Confidence            358999999986  699999999999999999987664  468999999988765532   45799998 6778999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q psy2209         137 DNEQSYERWMKAMREA  152 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a  152 (156)
                      +|++++..||.+|++|
T Consensus        77 ~s~~e~~~Wi~aLq~A   92 (94)
T 2rsg_A           77 QDPDHRQQWIDAIEQH   92 (94)
T ss_dssp             CSSCCTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhh
Confidence            9999999999999987

>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.88  E-value=8.6e-22  Score=128.31  Aligned_cols=90  Identities=22%  Similarity=0.434  Sum_probs=79.4

Q ss_pred             CCCcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEE
Q psy2209          59 SGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        59 ~~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      ..+.++|||.|+++   +.|++|||||.++.|+||+++.+..+.+.|+|.++..+...+    +++|.|. +.+++|+|+
T Consensus         6 ~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~----~~~F~i~-~~~r~~~l~   80 (115)
T 2cod_A            6 SGKVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQG----DNKFEVV-TTQRTFVFR   80 (115)
T ss_dssp             SCCCEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCCSSCCCEEETTTEEEEEEET----TTEEEEE-ESSCCEEEE
T ss_pred             CCccEEEEEEEcCCCCCCCCceEEEEEECCEEEEEcCCCCcccCCEEECCcceEEEeCC----CCEEEEE-eCCcEEEEE
Confidence            34679999999976   599999999999999999999888899999999886554432    4799998 677899999


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q psy2209         136 ADNEQSYERWMKAMREAT  153 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~  153 (156)
                      |++.+++..||.+|+.+.
T Consensus        81 a~s~~e~~~Wi~~l~~~~   98 (115)
T 2cod_A           81 VEKEEERNDWISILLNAL   98 (115)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH
Confidence            999999999999999886

>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A

Probab=99.88  E-value=5.1e-22  Score=127.40  Aligned_cols=90  Identities=22%  Similarity=0.449  Sum_probs=76.8

Q ss_pred             EEEEEEecc--------C--CCceEEEEEEeCCeEEEEccCCCc------ccceEEEccCeEEEEccCCCCceeEEEEEe
Q psy2209          63 HSGWLHKKS--------G--RNWKRYWFVLKDQVMYKYKASEDI------KALLSIPVLGYELEALNEQDNFKYVFQLKH  126 (156)
Q Consensus        63 ~~G~L~k~~--------~--k~Wk~r~~vL~~~~L~~yk~~~~~------~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~  126 (156)
                      ++|||.|++        .  +.|++|||||.++.|+||+++.+.      .+...|+|.++.+....+...++++|.|.+
T Consensus         1 ~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~   80 (106)
T 1btn_A            1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRL   80 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEEC
T ss_pred             CccEEEEEEEEeCCCccCCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEcccccCCccEEEEEe
Confidence            479999987        3  589999999999999999987632      256788998888777666666789999997


Q ss_pred             CCCccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         127 QGQDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       127 ~~~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      ++++.|+|+|+|++++.+||.+|+.|
T Consensus        81 ~~~~~~~~~A~s~~e~~~Wi~ai~~A  106 (106)
T 1btn_A           81 SDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcC
Confidence            67789999999999999999999875

>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1

Probab=99.88  E-value=8.4e-22  Score=128.48  Aligned_cols=95  Identities=25%  Similarity=0.387  Sum_probs=81.4

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEe--CCeEEEEccCCCcccceEEEccCeEEEEccC-------CCCceeEEEEEeC
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEALNE-------QDNFKYVFQLKHQ  127 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~--~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~-------~~~~~~~f~i~~~  127 (156)
                      ..+.++|||.|+++  +.|++|||||.  ++.|+||+++.+..+.+.|+|.++..+...+       ...++++|.|. +
T Consensus         6 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~-~   84 (117)
T 1v5u_A            6 SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVK-T   84 (117)
T ss_dssp             CSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEE-E
T ss_pred             CCccEEEEEEecCCCCCCceeeEEEEECCCCEEEEeecCCCCccceEEEccCcEEEeecCccccccccCCCCeEEEEE-C
Confidence            45679999999986  59999999999  8899999999888899999999988766432       12345899997 6


Q ss_pred             CCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         128 GQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       128 ~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      ..++|+|+|+|++++..||.+|+.|..
T Consensus        85 ~~r~~~l~a~s~~e~~~Wi~al~~~i~  111 (117)
T 1v5u_A           85 TRRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHHHhc
Confidence            778999999999999999999998764

>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A

Probab=99.88  E-value=4.4e-22  Score=129.10  Aligned_cols=94  Identities=16%  Similarity=0.335  Sum_probs=78.6

Q ss_pred             CCcEEEEEEeccC--CCceEEEEEE-eCCeEEEEccCCCcccceEEEccCeEEEE----------ccCCCCceeEEEEEe
Q psy2209          60 GSQHSGWLHKKSG--RNWKRYWFVL-KDQVMYKYKASEDIKALLSIPVLGYELEA----------LNEQDNFKYVFQLKH  126 (156)
Q Consensus        60 ~~~~~G~L~k~~~--k~Wk~r~~vL-~~~~L~~yk~~~~~~~~~~i~L~~~~~~~----------~~~~~~~~~~f~i~~  126 (156)
                      .+.++|||.|+++  +.|++||||| .++.|+||+++.+..+.+.|+|....+..          .++...++++|.|.+
T Consensus         4 ~~~~~G~L~K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~i~~   83 (112)
T 3aj4_A            4 AFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQIVC   83 (112)
T ss_dssp             SCSEEEEEEEECSSSCCEEEEEEEECTTSEEEEESSTTCCSEEEEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGEEEEEE
T ss_pred             ceeEEEEEEeeCCCCCCeeceEEEEeeCCEEEEEcCCCCCCCCccccccccceeecccccccccCCCCCCCcCcEEEEEe
Confidence            4679999999986  6999999999 89999999999888889999997654321          112223468999987


Q ss_pred             CCCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         127 QGQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       127 ~~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ++.++|+|+|+|++++..||.+|+.|.
T Consensus        84 ~~~r~~~l~a~s~~e~~~Wi~al~~a~  110 (112)
T 3aj4_A           84 RDGKTISLCAESTDDCLAWKFTLQDSR  110 (112)
T ss_dssp             TTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            778999999999999999999999885

>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A

Probab=99.88  E-value=6.1e-22  Score=126.57  Aligned_cols=89  Identities=22%  Similarity=0.407  Sum_probs=76.5

Q ss_pred             EEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCc--ccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCC
Q psy2209          63 HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  138 (156)
Q Consensus        63 ~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~--~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s  138 (156)
                      ++|||.|+++  +.|++|||||.++.|+||+++.+.  .+.|.|+|.++.+...++   .+++|.|..++.++|+|+|+|
T Consensus         1 ~eG~L~K~g~~~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~~~g~i~L~~~~v~~~~~---~~~~F~i~~~~~r~~~l~a~s   77 (103)
T 3rcp_A            1 MEGVLYKWTNYLTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSA---DNTRMELIIPGEQHFYMKAVN   77 (103)
T ss_dssp             CEEEEEEECCTTTCEEEEEEEEETTEEEEESSCC---CCCSCEEEGGGCEEECCTT---CSSEEEEEETTTEEEEEECSS
T ss_pred             CceEEEEccCCCCCeeceEEEEECCEEEEEecCCcccCCcccEEEeeeeEEEEcCC---CCceEEEEeCCCCEEEEECCC
Confidence            4799999986  589999999999999999998753  579999999888866533   357999997778999999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy2209         139 EQSYERWMKAMREATT  154 (156)
Q Consensus       139 ~~~~~~Wi~al~~a~~  154 (156)
                      ++++..||.+|+.|..
T Consensus        78 ~~e~~~Wi~al~~a~~   93 (103)
T 3rcp_A           78 AAERQRWLVALGSSKA   93 (103)
T ss_dssp             HHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998753

>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}

Probab=99.87  E-value=3.6e-21  Score=126.72  Aligned_cols=92  Identities=22%  Similarity=0.444  Sum_probs=79.1

Q ss_pred             cEEEEEEec-----cC----CCceEEEEEEeCCeEEEEccCC---------CcccceEEEccCeEEEEccCCCCceeEEE
Q psy2209          62 QHSGWLHKK-----SG----RNWKRYWFVLKDQVMYKYKASE---------DIKALLSIPVLGYELEALNEQDNFKYVFQ  123 (156)
Q Consensus        62 ~~~G~L~k~-----~~----k~Wk~r~~vL~~~~L~~yk~~~---------~~~~~~~i~L~~~~~~~~~~~~~~~~~f~  123 (156)
                      .++|+|.++     |+    +.|+++||+|.|+.|+||+...         +..|.+.|+|.|+.+. ..+...++++|+
T Consensus         2 ~~~G~L~rk~llK~G~k~~~ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V~-~~e~~~~~~~F~   80 (126)
T 2dtc_A            2 TMEGPLRRKTLLKEGRKPALSSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMVQ-LPDDPEHPDIFQ   80 (126)
T ss_dssp             CEEEEEEEEEEEBTTBCCSSCCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEEE-CCCCTTSTTEEE
T ss_pred             ceeeeeeeeehhhcCCcccccCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEEE-ecCCCCCCCEEE
Confidence            478888864     44    3799999999999999999753         4578999999999997 556666889999


Q ss_pred             EEeC-CCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         124 LKHQ-GQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       124 i~~~-~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |..+ .+..|+|+|+|++++..|+++|+.|+.
T Consensus        81 L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a~~  112 (126)
T 2dtc_A           81 LNNPDKGNVYKFQTGSRFHAILWHKHLDDACK  112 (126)
T ss_dssp             EECTTSCSEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             EeeCCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            9966 678899999999999999999999874

>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1

Probab=99.87  E-value=1.1e-21  Score=129.34  Aligned_cols=95  Identities=21%  Similarity=0.353  Sum_probs=81.5

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC---CCCceeEEEEEeCCCccEE
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE---QDNFKYVFQLKHQGQDPLV  133 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~---~~~~~~~f~i~~~~~~~~~  133 (156)
                      ..+.++|||.|+++  +.|++|||+|.++.|+||+++.+..+.+.|+|.++..+....   ...++++|.|. +.++.|+
T Consensus        12 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~-~~~r~~~   90 (125)
T 1eaz_A           12 SAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIV-TTSRTFY   90 (125)
T ss_dssp             CCCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEE-CSSCEEE
T ss_pred             CCccEEEEEEEeCCCCCCcceEEEEEeCCEEEEEcCCCCCcceeEEEcccceEEeeccccccCCcCCEEEEE-eCCcEEE
Confidence            45679999999986  689999999999999999999888899999999886554321   12357999998 6778999


Q ss_pred             EEcCCHHHHHHHHHHHHHHHh
Q psy2209         134 FGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       134 ~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |+|+|++++..|+.+|+.+..
T Consensus        91 l~a~s~~e~~~W~~al~~~i~  111 (125)
T 1eaz_A           91 VQADSPEEMHSWIKAVSGAIV  111 (125)
T ss_dssp             EECSSHHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHHHH
Confidence            999999999999999998864

>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.87  E-value=1.5e-21  Score=132.88  Aligned_cols=95  Identities=25%  Similarity=0.382  Sum_probs=82.3

Q ss_pred             CCCcEEEEEEeccC--------CCceEEEEEEeCC-----eEEEEccCC-CcccceEEEccCeEEEEccCCCCceeEEEE
Q psy2209          59 SGSQHSGWLHKKSG--------RNWKRYWFVLKDQ-----VMYKYKASE-DIKALLSIPVLGYELEALNEQDNFKYVFQL  124 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--------k~Wk~r~~vL~~~-----~L~~yk~~~-~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i  124 (156)
                      ..+.++|||.|++.        +.|++|||||.++     .|+||+++. +..+.+.|+|.++.++.... ..++++|.|
T Consensus        16 ~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~~~~~~~~-~~~~~~F~i   94 (150)
T 1wg7_A           16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNN-KVRRFAFEL   94 (150)
T ss_dssp             CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCCC-SSCTTEEEE
T ss_pred             CCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecccCEEEecCC-CCCceEEEE
Confidence            45679999999973        4899999999987     999999987 77889999999988876533 346799999


Q ss_pred             EeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         125 KHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       125 ~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .+++.+.|+|+|++.+++..||.+|+.|+.
T Consensus        95 ~~~~~r~~~l~A~s~~e~~~Wi~al~~ai~  124 (150)
T 1wg7_A           95 KMQDKSSYLLAADSEVEMEEWITILNKILQ  124 (150)
T ss_dssp             ECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EeCCCcEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            966668999999999999999999998864

>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1

Probab=99.87  E-value=5.5e-22  Score=130.76  Aligned_cols=96  Identities=18%  Similarity=0.387  Sum_probs=81.4

Q ss_pred             CCcEEEEEEecc----------CCCceEEEEEEeCCeEEEEccCCCccc--------ceEEEccCeEEEEccCCCCceeE
Q psy2209          60 GSQHSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASEDIKA--------LLSIPVLGYELEALNEQDNFKYV  121 (156)
Q Consensus        60 ~~~~~G~L~k~~----------~k~Wk~r~~vL~~~~L~~yk~~~~~~~--------~~~i~L~~~~~~~~~~~~~~~~~  121 (156)
                      .+.++|||.++.          .+.|++|||||+++.|+||+++.+..+        .+.|+|.++.+....+..+++++
T Consensus         7 ~v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v~~~~d~~kr~~~   86 (122)
T 1dro_A            7 GEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKHV   86 (122)
T ss_dssp             SSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSSTTE
T ss_pred             ceEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCEEEeCCCCCCCCeE
Confidence            467999998863          248999999999999999999876543        36789988877777666668899


Q ss_pred             EEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         122 FQLKHQGQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       122 f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      |.|.+.+++.|+|+|+|++++++||.+|+.++..
T Consensus        87 F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~i~~  120 (122)
T 1dro_A           87 LRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             EEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             EEEEEcCCCEEEEECCCHHHHHHHHHHHHHHHHh
Confidence            9999667889999999999999999999998753

>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.87  E-value=8.6e-22  Score=129.38  Aligned_cols=93  Identities=16%  Similarity=0.335  Sum_probs=78.5

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEe--CCeEEEEccCCCc--ccceEEEccCeEEEEccCCCCceeEEEEEeCCCccE
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLK--DQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPL  132 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~--~~~L~~yk~~~~~--~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~  132 (156)
                      ..+.++|||.|+++  +.|++|||||.  ++.|+||+++.+.  .+.|.|+|.++.+....   ..+++|.|..+++++|
T Consensus         6 ~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~~~v~~~~---~~~~~F~i~~~~~r~~   82 (120)
T 2d9x_A            6 SGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSD---EDSHTFTVNAASGEQY   82 (120)
T ss_dssp             SCCCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTTCCEECCS---SSSSCEEECCSSSCCE
T ss_pred             CCCcEEEEEEecCCCCCCceEEEEEEECCCCEEEEEecCcccCCCccceEEcceEEEEecC---CCCCEEEEEcCCCCEE
Confidence            34679999999875  68999999998  5899999987764  67999999998765432   3458999986666899


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHh
Q psy2209         133 VFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       133 ~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +|+|+|++++..||.+|+.|..
T Consensus        83 ~l~a~s~~e~~~Wi~al~~~~~  104 (120)
T 2d9x_A           83 KLRATDAKERQHWVSRLQICTQ  104 (120)
T ss_dssp             EECCSSHHHHHHHHHHHHHHHH
T ss_pred             EEECCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998764

>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*

Probab=99.87  E-value=2.3e-21  Score=134.61  Aligned_cols=94  Identities=19%  Similarity=0.236  Sum_probs=76.8

Q ss_pred             CCcEEEEEEeccC-------CCceEEEEEEeCCeEEEEcc----CCCcccceEEEccCeEEEEcc---CC--CCce----
Q psy2209          60 GSQHSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKA----SEDIKALLSIPVLGYELEALN---EQ--DNFK----  119 (156)
Q Consensus        60 ~~~~~G~L~k~~~-------k~Wk~r~~vL~~~~L~~yk~----~~~~~~~~~i~L~~~~~~~~~---~~--~~~~----  119 (156)
                      .++++|||.|++.       +.|++|||||+++.|+||++    +.+..+.|.|+|.++.++...   +.  ..++    
T Consensus         2 ~vikeG~L~Kr~~~~~~~~~k~WKkRwFVL~~~~L~Yyk~~~~~~~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~   81 (169)
T 1btk_A            2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR   81 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred             ceEEEEEEEEecCCCCCcccCCCceEEEEEcCCEEEEEecCCccCCCCceeeEEECcceEEEEeccCCCCcchhcccccc
Confidence            3679999999762       47999999999999999998    566788999999998765432   11  1122    


Q ss_pred             -----------------eEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         120 -----------------YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       120 -----------------~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                                       ++|+|. +..++|||+|+|++|+++||++|+.++.
T Consensus        82 ~~~~~~~~~~~i~~~~~~~F~I~-t~~rt~yl~A~s~~E~~eWi~aI~~~i~  132 (169)
T 1btk_A           82 GEESSEMEQISIIERFPYPFQVV-YDEGPLYVFSPTEELRKRWIHQLKNVIR  132 (169)
T ss_dssp             ------CCTTHHHHCCCEEEEEE-ETTCCEEEEESCHHHHHHHHHHHHHHHT
T ss_pred             cCcccccccccccccccccEEEE-eCCceEEEEcCCHHHHHHHHHHHHHHHH
Confidence                             899998 4557899999999999999999999875

>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A

Probab=99.86  E-value=3.4e-21  Score=138.14  Aligned_cols=96  Identities=19%  Similarity=0.403  Sum_probs=84.2

Q ss_pred             CCCcEEEEEEeccC------CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC---CCCceeEEEEEeCCC
Q psy2209          59 SGSQHSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE---QDNFKYVFQLKHQGQ  129 (156)
Q Consensus        59 ~~~~~~G~L~k~~~------k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~---~~~~~~~f~i~~~~~  129 (156)
                      ..+.++|||.|+++      +.|++|||||.++.|+||+++.+..+.|.|+|.++.++..++   ...++++|.|.+++.
T Consensus       104 ~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~k~~~F~I~t~~~  183 (211)
T 1u5e_A          104 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK  183 (211)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSS
T ss_pred             CCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCccceEEEEeCCcEEEEcCCccccCCCCCEEEEEcCCC
Confidence            45779999999874      499999999999999999999988899999999999987532   334679999996667


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         130 DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      ++|+|+|++.+++..||.+|+.|..
T Consensus       184 r~~~l~A~s~~e~~~Wi~aL~~ai~  208 (211)
T 1u5e_A          184 RIYQFTAASPKDAEEWVQQLKFILQ  208 (211)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999864

>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.86  E-value=3.2e-21  Score=127.88  Aligned_cols=96  Identities=21%  Similarity=0.401  Sum_probs=80.9

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEe--CCeEEEEccC-CCcccceEEEccCeEEEEccCC-----CC---ceeEEEEE
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLK--DQVMYKYKAS-EDIKALLSIPVLGYELEALNEQ-----DN---FKYVFQLK  125 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~--~~~L~~yk~~-~~~~~~~~i~L~~~~~~~~~~~-----~~---~~~~f~i~  125 (156)
                      ..+.++|||.|++.  +.|++|||||.  ++.|+||+++ .+..+.+.|+|.++.+....+.     ..   ++++|.|.
T Consensus        16 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F~I~   95 (129)
T 1x1g_A           16 GTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVI   95 (129)
T ss_dssp             SEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEEC
T ss_pred             CCEEEEEEEEEECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCccceEEECcCCEEEEeCCCCCcccccCCCCCceEEEE
Confidence            44679999999985  59999999999  4799999987 6778899999999877665432     11   46999999


Q ss_pred             eCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         126 HQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       126 ~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +++.++|+|+|++++++..||.+|+.|+.
T Consensus        96 ~~~~r~~~l~a~s~~e~~~Wi~al~~~~~  124 (129)
T 1x1g_A           96 TKDDTHYYIQASSKAERAEWIEAIKKLTS  124 (129)
T ss_dssp             CTTCCCEEECCSSHHHHHHHHHHHHHHSS
T ss_pred             cCCCCEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            66667899999999999999999999864

>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=1.2e-20  Score=122.91  Aligned_cols=91  Identities=23%  Similarity=0.423  Sum_probs=76.0

Q ss_pred             CCCcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEE
Q psy2209          59 SGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        59 ~~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      ..+.++|||.|+++   +.|++|||||.++.|+||+++.+ .+.+.+.+.++.+...+   .++++|.|. +..++|+|+
T Consensus         8 ~~~~~~G~L~K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~-~~~~~i~l~~~~v~~~~---~~~~~F~I~-~~~r~~~l~   82 (114)
T 2da0_A            8 YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSN-RQPAKLNLLTCQVKPNA---EDKKSFDLI-SHNRTYHFQ   82 (114)
T ss_dssp             CCSCEEEEEEEECSSSCCCEEEEEEEEETTEEEECCSSCC-SCCEEEETTTSEEEECS---SSSSCEEEE-ETTEEEEEE
T ss_pred             CCccEEEEEEEeCCCCCCCceeEEEEEeCCEEEEEcCCCC-CCCCEEEeeeeEEEECC---CCCCEEEEE-cCCcEEEEE
Confidence            34679999999986   69999999999999999999655 56777888777765332   246899998 667899999


Q ss_pred             cCCHHHHHHHHHHHHHHHh
Q psy2209         136 ADNEQSYERWMKAMREATT  154 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~~  154 (156)
                      |+|++++..||.+|+.|..
T Consensus        83 a~s~~e~~~Wi~al~~~~~  101 (114)
T 2da0_A           83 AEDEQDYVAWISVLTNSKE  101 (114)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998753

>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A

Probab=99.86  E-value=5e-22  Score=131.24  Aligned_cols=96  Identities=18%  Similarity=0.398  Sum_probs=76.5

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEeC-CeEEEEccCCCcccceEEEccCeEEEEc---cCCCCceeEEEEEe---CCC
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLKD-QVMYKYKASEDIKALLSIPVLGYELEAL---NEQDNFKYVFQLKH---QGQ  129 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~~-~~L~~yk~~~~~~~~~~i~L~~~~~~~~---~~~~~~~~~f~i~~---~~~  129 (156)
                      ..+.++|||.|+++  +.|++|||||.+ +.|+||+++.+..+.+.|+|.++.+...   .....++++|.|..   +..
T Consensus         6 ~~~~~~G~L~K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~~~~   85 (125)
T 1unq_A            6 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTV   85 (125)
T ss_dssp             GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEE
T ss_pred             CCeeEEeeEEeccCCccCccCcEEEEecCCEEEEEeCCCCCCCCceeEccceeEEeeeecccccCCCCEEEEEecCCCCc
Confidence            34679999999986  699999999995 6999999988877777777766543211   11234668999985   456


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         130 DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +.|+|+|+|.+++..||.+|+.++.
T Consensus        86 ~~~~~~a~s~~e~~~Wi~al~~~~~  110 (125)
T 1unq_A           86 IERTFHVETPEEREEWTTAIQTVAD  110 (125)
T ss_dssp             EEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEeCCHHHHHHHHHHHHHHHh
Confidence            7899999999999999999998864

>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}

Probab=99.85  E-value=2.3e-20  Score=129.01  Aligned_cols=95  Identities=23%  Similarity=0.260  Sum_probs=77.7

Q ss_pred             CCCcEEEEEEeccC-------CCceEEEEEEeCCeEEEEccCCCc-ccceEEEccCeEEEEcc-CC-----CCceeEEEE
Q psy2209          59 SGSQHSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDI-KALLSIPVLGYELEALN-EQ-----DNFKYVFQL  124 (156)
Q Consensus        59 ~~~~~~G~L~k~~~-------k~Wk~r~~vL~~~~L~~yk~~~~~-~~~~~i~L~~~~~~~~~-~~-----~~~~~~f~i  124 (156)
                      ..++++|||.|++.       +.|++|||||+++.|+||+++.+. .+.|.|+|.++..+... +.     ...+++|+|
T Consensus        13 ~~~i~EG~L~Kr~~~kk~~~~knWKkRwFVL~~~~L~Yyk~~~~~~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i   92 (164)
T 2lul_A           13 FNTILEEILIKRSQQKKKTSPLNYKERLFVLTKSMLTYYEGRAEKKYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQV   92 (164)
T ss_dssp             SSEEEEEEEEEECCCCSSSCCCCEEEEEEEEESSEEEEECCCSSSCCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEE
T ss_pred             CCeeEEEEEEEecCCCCCCCCCCceeEEEEEECCEEEEEeccCcccccccEEEEeeeEEEEeccccccCcccccceeEEE
Confidence            45789999999874       369999999999999999987654 46899999887655422 11     224589999


Q ss_pred             EeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         125 KHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       125 ~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      . +..++|||+|+|++|+++||++|++++.
T Consensus        93 ~-t~~rt~~l~A~s~~e~~~Wi~aL~~~i~  121 (164)
T 2lul_A           93 V-HDANTLYIFAPSPQSRDLWVKKLKEEIK  121 (164)
T ss_dssp             E-CSSCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             e-cCCcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            8 6778999999999999999999999875

>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A

Probab=99.85  E-value=9.8e-21  Score=131.14  Aligned_cols=94  Identities=24%  Similarity=0.524  Sum_probs=69.3

Q ss_pred             CCcEEEEEEe----------ccC--CCceEEEEEEeCCeEEEEccCCC--cccceEEEccC--eEEEEccCCCCceeEEE
Q psy2209          60 GSQHSGWLHK----------KSG--RNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLG--YELEALNEQDNFKYVFQ  123 (156)
Q Consensus        60 ~~~~~G~L~k----------~~~--k~Wk~r~~vL~~~~L~~yk~~~~--~~~~~~i~L~~--~~~~~~~~~~~~~~~f~  123 (156)
                      ++.++|||.+          ++.  +.|++|||||.++.|+||+++.+  ..+.+.|+|..  +.+....+..+++++|.
T Consensus         2 dv~~eG~L~~k~~~~~~gkK~g~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~F~   81 (168)
T 2j59_M            2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFR   81 (168)
T ss_dssp             -CCEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSSCSCSSEEE
T ss_pred             CCcEEEEEeeeeecccCCcccCCCCCCceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEEeccccCCCCCEEE
Confidence            3679999994          332  58999999999999999999865  45688887765  55555555556789999


Q ss_pred             EEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         124 LKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       124 i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |.+ .++.|+|+|++++++..||.+|+.++.
T Consensus        82 I~t-~~r~~~l~A~s~~e~~~Wi~ai~~~~~  111 (168)
T 2j59_M           82 LTT-SDCECLFQAEDRDDMLAWIKTIQESSN  111 (168)
T ss_dssp             EEC-SSCEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred             EEe-CCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence            994 458899999999999999999998764

>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A

Probab=99.85  E-value=2e-20  Score=138.19  Aligned_cols=96  Identities=24%  Similarity=0.479  Sum_probs=80.5

Q ss_pred             CCCcEEEEEE--------ecc------CCCceEEEEEEeCCeEEEEccC------CCcccceEEEccCeEEEEccCCCCc
Q psy2209          59 SGSQHSGWLH--------KKS------GRNWKRYWFVLKDQVMYKYKAS------EDIKALLSIPVLGYELEALNEQDNF  118 (156)
Q Consensus        59 ~~~~~~G~L~--------k~~------~k~Wk~r~~vL~~~~L~~yk~~------~~~~~~~~i~L~~~~~~~~~~~~~~  118 (156)
                      ..+.++|||.        |.+      .+.|++|||||.++.|+||+++      .+..+.+.|+|.++.+....+..++
T Consensus         9 ~~v~K~G~L~~k~~~~~~K~g~~~~~~~K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~kk   88 (263)
T 3a8p_A            9 GVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQSVPEHPKK   88 (263)
T ss_dssp             -CEEEEEEEEEEEEEEEEGGGEEEECTTCCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEEECTTCSSC
T ss_pred             CCeEEEEEeeecccccccCCCCccCccCCCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEEECCcCCCC
Confidence            4467999999        333      3589999999999999999984      4567799999999988876666667


Q ss_pred             eeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         119 KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       119 ~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +++|.|.+.+++.|+|+|+|++++.+||.+|+.|+.
T Consensus        89 ~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~  124 (263)
T 3a8p_A           89 EHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACA  124 (263)
T ss_dssp             SSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            899999965788999999999999999999998764

>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=126.27  Aligned_cols=95  Identities=18%  Similarity=0.321  Sum_probs=76.4

Q ss_pred             CCcEEEEEEec--cC--CCceEEEEEEeCCeEEEEccCCC---cccceEEEccCeEE---EEccC-CCCceeEEEEEeC-
Q psy2209          60 GSQHSGWLHKK--SG--RNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYEL---EALNE-QDNFKYVFQLKHQ-  127 (156)
Q Consensus        60 ~~~~~G~L~k~--~~--k~Wk~r~~vL~~~~L~~yk~~~~---~~~~~~i~L~~~~~---~~~~~-~~~~~~~f~i~~~-  127 (156)
                      .+.++|||.|+  ++  +.|++|||||.++.|+||+++.+   ..+.|.|+|.++.+   ...+. ...++++|.|... 
T Consensus         4 ~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~~~~   83 (134)
T 2y7b_A            4 SVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFELITVR   83 (134)
T ss_dssp             CCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEEEEE
T ss_pred             CceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcccccCceEEEEhhhCccccccccchhhccCCCEEEEEecC
Confidence            46799999998  54  48999999999999999996544   67899999998873   33322 1346799999852 


Q ss_pred             -CC-----------------ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         128 -GQ-----------------DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       128 -~~-----------------~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                       ..                 +.|+|+|+|++++..||.+|+.|..
T Consensus        84 p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al~~~i~  128 (134)
T 2y7b_A           84 PQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKLNQVLV  128 (134)
T ss_dssp             ECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence             21                 3699999999999999999998864

>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}

Probab=99.83  E-value=7.1e-20  Score=121.52  Aligned_cols=94  Identities=13%  Similarity=0.276  Sum_probs=69.2

Q ss_pred             CcEEEEEEec-cC---CCceEEEEEEeC-CeEEEEccCCC---cccceEEEccCeEEEEcc-------------------
Q psy2209          61 SQHSGWLHKK-SG---RNWKRYWFVLKD-QVMYKYKASED---IKALLSIPVLGYELEALN-------------------  113 (156)
Q Consensus        61 ~~~~G~L~k~-~~---k~Wk~r~~vL~~-~~L~~yk~~~~---~~~~~~i~L~~~~~~~~~-------------------  113 (156)
                      +.++|||.|+ ++   +.|++|||||.+ +.|+||++..+   ....+.|+|..+.+....                   
T Consensus         4 ~~k~G~L~K~~g~~~~k~WkkRwFvL~~~~~l~Y~~~~~d~~~~~~~~~i~l~~~~~~~~~~~i~l~~~~~~~~~~~~~~   83 (128)
T 2rlo_A            4 PIKQSFLLKRSGNSLNKEWKKKYVTLSSNGFLLYHPSINDYIHSTHGKEMDLLRTTVKVPGKRPPRAISAFGPSASGSAG   83 (128)
T ss_dssp             EEEEEEEEEECSCSTTCCEEEEEEEEETTTEEEEESSHHHHHHTCSCEEEESSSCEEECSSCCCCCSSCCCSCCSCCCCS
T ss_pred             ceeEEEEEEecCCCccCCccEEEEEEeCCCEEEEecchhhhccccCCCeeeeeeeEEecCCCcccccccccccccccccc
Confidence            5799999999 42   589999999996 78888876322   111334555554443211                   


Q ss_pred             CCCCceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         114 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       114 ~~~~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      ....++++|.|.++++++|+|+|+|++|++.||.+|+.+..
T Consensus        84 ~~~~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i~  124 (128)
T 2rlo_A           84 QAEEENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQIL  124 (128)
T ss_dssp             SCCCCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ccccCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            11245699999866668999999999999999999998865

>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*

Probab=99.83  E-value=4.1e-20  Score=136.52  Aligned_cols=93  Identities=19%  Similarity=0.293  Sum_probs=78.5

Q ss_pred             CCCCcEEEEEEeccCCCceEEEEEEeCC-------eEEEEccCCC-----cccceEEEccCeEEEEccCCCCceeEEEEE
Q psy2209          58 DSGSQHSGWLHKKSGRNWKRYWFVLKDQ-------VMYKYKASED-----IKALLSIPVLGYELEALNEQDNFKYVFQLK  125 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~k~Wk~r~~vL~~~-------~L~~yk~~~~-----~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~  125 (156)
                      ...+.++|||.|+  |.|++|||||.++       .|+||+++.+     ..+.+.|+|.++..+.......++++|.|.
T Consensus         7 ~~~v~k~G~L~K~--K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~~~~~~~F~I~   84 (264)
T 1qqg_A            7 FSDVRKVGYLRKP--KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVALY   84 (264)
T ss_dssp             --CEEEEEEEECT--TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEEEEE
T ss_pred             CCCccEEEEEEEC--CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccCCCCCcEEEEE
Confidence            3457899999998  8999999999988       9999999877     578999999998755433334567999999


Q ss_pred             eCCCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         126 HQGQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       126 ~~~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                       +..++|+|+|+|++++..||.+|+.+.
T Consensus        85 -t~~rty~l~A~se~e~~~Wi~aL~~~~  111 (264)
T 1qqg_A           85 -TRDEHFAIAADSEAEQDSWYQALLQLH  111 (264)
T ss_dssp             -ESSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             -ECCEEEEEEeCCHHHHHHHHHHHHHHH
Confidence             558899999999999999999999864

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=99.82  E-value=8.4e-20  Score=132.37  Aligned_cols=95  Identities=20%  Similarity=0.439  Sum_probs=83.0

Q ss_pred             cCCCCcEEEEEEeccC-------CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCC
Q psy2209          57 NDSGSQHSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ  129 (156)
Q Consensus        57 ~~~~~~~~G~L~k~~~-------k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~  129 (156)
                      ....+.++|||.|+++       +.|++|||||.++.|+||+++.+..+.|.|+|.++.++....  .++++|.|. +.+
T Consensus        54 ~~~~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~~~g~I~L~~~~~v~~~~--~k~~~F~I~-t~~  130 (228)
T 3tfm_A           54 SKQEALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNT--NKENGIDII-MAD  130 (228)
T ss_dssp             SCCCSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCSEEEEEEGGGCSEEEEET--TTTSEEEEE-CSS
T ss_pred             cCCCcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcceeEEEEcCCCEEeccCC--CCCcEEEEE-cCC
Confidence            3456789999999975       689999999999999999999888899999999988755433  356899998 677


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         130 DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      ++|+|+|+|++++..|+.+|+.+..
T Consensus       131 r~~~l~A~s~~e~~~Wv~aL~~~i~  155 (228)
T 3tfm_A          131 RTFHLIAESPEDASQWFSVLSQVHS  155 (228)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            8999999999999999999998874

>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*

Probab=99.82  E-value=2.3e-19  Score=137.35  Aligned_cols=94  Identities=24%  Similarity=0.562  Sum_probs=82.3

Q ss_pred             CCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCC---------
Q psy2209          60 GSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG---------  128 (156)
Q Consensus        60 ~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~---------  128 (156)
                      .+.++|||.|+++  +.|++|||||.++.|+||+++.+..+.|.|+|.++.+....+ ..++++|.|..++         
T Consensus       212 ~~~k~G~L~K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~p~G~I~L~~~~v~~~~~-~~~~~~F~I~~~~~~~~~~~~~  290 (347)
T 2r09_A          212 NPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVED-PRKPNCFELYNPSHKGQVIKAC  290 (347)
T ss_dssp             CCCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECC-SSCSSEEEEECSSSTTCCCCCE
T ss_pred             ccccCCeeEecCCCcccceeEEEEEcCCEEEEEcCCCccCCcEEEEcCCeEEEEccC-CCCCCEEEEEeCCccccccccc
Confidence            3579999999986  599999999999999999999888899999999998776543 3577999998553         


Q ss_pred             ------------CccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         129 ------------QDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       129 ------------~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                                  .++|+|+|+|++++..||.+|+.+..
T Consensus       291 k~~~~g~~v~~~~r~y~l~A~s~ee~~~Wi~aI~~ai~  328 (347)
T 2r09_A          291 KTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  328 (347)
T ss_dssp             EECTTSCEEECCCSCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccCceEEEEECCCHHHHHHHHHHHHHHHh
Confidence                        47899999999999999999998864

>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A

Probab=99.79  E-value=1e-18  Score=135.52  Aligned_cols=94  Identities=14%  Similarity=0.388  Sum_probs=78.5

Q ss_pred             CCCcEEEEEEeccCC-----CceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCC-ccE
Q psy2209          59 SGSQHSGWLHKKSGR-----NWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ-DPL  132 (156)
Q Consensus        59 ~~~~~~G~L~k~~~k-----~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~-~~~  132 (156)
                      ..+.++|||+|+++.     .|++|||+|+++.|+||++ .+..+.+.|+|.++.+....+ ..+++||.|.++++ ++|
T Consensus       276 ~~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~-~~~~~~~~i~l~~~~v~~~~~-~~r~~~F~i~t~~~~~~~  353 (385)
T 2q13_A          276 NLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQAR-GDVAGGLAMDIDNCSVMAVDC-EDRRYCFQITSFDGKKSS  353 (385)
T ss_dssp             CCSCCEEEEEEC--------CCEEEEEEEETTEEEEECS-SCSSCEEEEECTTCEEEEECC-TTCSSEEEEECTTSCBCC
T ss_pred             CCccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecC-CCcCCCceEEccceEEEeccc-cCCCceEEEEeCCCCeEE
Confidence            356799999998742     5999999999999999999 556678999999998877644 35679999995554 899


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHh
Q psy2209         133 VFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       133 ~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +|+|+|++++..||.+|+.+..
T Consensus       354 ~l~A~s~~e~~~Wi~ai~~~~~  375 (385)
T 2q13_A          354 ILQAESKKDHEEWICTINNISK  375 (385)
T ss_dssp             CEECSSHHHHHHHHHHHHHHHT
T ss_pred             EEEeCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998764

>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.78  E-value=6.8e-19  Score=116.15  Aligned_cols=94  Identities=20%  Similarity=0.418  Sum_probs=79.3

Q ss_pred             CcEEEEEEeccC-----CCceEEEEEEeCCeEEEEccCCCc--ccceEEEccCeEEEEccCCCCceeEEEEEeC---CCc
Q psy2209          61 SQHSGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQ---GQD  130 (156)
Q Consensus        61 ~~~~G~L~k~~~-----k~Wk~r~~vL~~~~L~~yk~~~~~--~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~---~~~  130 (156)
                      +...+||...++     |.|++|||+|+++.|+||++..+.  .|.|.|+|.||++.........++.|.+..+   +.+
T Consensus         9 pel~~~l~~~~pkk~tlK~~KrrWFvlk~~~L~YyK~kee~~~ePig~I~L~gceV~pd~~~~~~kf~ikl~iPs~~g~r   88 (137)
T 2ys3_A            9 PELKDHLRIFRPRKLTLKGYRQHWVVFKETTLSYYKSQDEAPGDPIQQLNLKGCEVVPDVNVSGQKFCIKLLVPSPEGMS   88 (137)
T ss_dssp             CCEECCCEECCTTSCCSSSSCCCEEEECSSCEEEESSTTTTTSCCSCCBCTTTCEEEECCBGGGTBEEEEEEEECSSSEE
T ss_pred             cchhHHHHhhCccccccccceeEEEEEeCCEEEEECCchhccCCCceEEECCCCEEeccccccCCceEEEEEccCCCCce
Confidence            568899988764     489999999999999999988876  8999999999998777544456677766533   458


Q ss_pred             cEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         131 PLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       131 ~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .|+|.|+|++++.+||+||+.|+.
T Consensus        89 ~y~l~cdsEeqy~~WMaA~rlAsk  112 (137)
T 2ys3_A           89 EIYLRCQDEQQYARWMAGCRLASK  112 (137)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCHHHHHHHHHHHHHhcc
Confidence            899999999999999999999874

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.78  E-value=1.8e-18  Score=133.97  Aligned_cols=96  Identities=14%  Similarity=0.293  Sum_probs=78.8

Q ss_pred             CCCCcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCe----EEEEc-cCCCC---ceeEEEEEe
Q psy2209          58 DSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGY----ELEAL-NEQDN---FKYVFQLKH  126 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~----~~~~~-~~~~~---~~~~f~i~~  126 (156)
                      ...+.++|||.|+++   +.|++|||||.++.|+||+++.+..+.|.|+|..+    .+... +....   .+++|.|. 
T Consensus       266 ~~~~~k~G~L~K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F~I~-  344 (386)
T 3lju_X          266 SRNYLKEGYMEKTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIV-  344 (386)
T ss_dssp             SCCCSEEEEEEECCTTSCSCCEEEEEEEETTEEEEESSTTCSBCSEEEECCCGGGTCEEEESCCTTCCSCCSCEEEEEE-
T ss_pred             ccccceeeeEEEECCCCCCCCcccEEEEECCEEEEEecCCCcccceEEEeecceeeeeecccCCccccccCCCcEEEEE-
Confidence            345789999999975   58999999999999999999999999999999543    33332 22221   25999998 


Q ss_pred             CCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         127 QGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       127 ~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +..++|+|+|+|++++.+||.+|+.+..
T Consensus       345 t~~rty~l~A~s~~e~~~Wi~aL~~~i~  372 (386)
T 3lju_X          345 TPDRKFLFACETESDQREWVAAFQKAVD  372 (386)
T ss_dssp             CSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             eCCeEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            6678999999999999999999998764

>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}

Probab=99.77  E-value=4.3e-19  Score=131.24  Aligned_cols=97  Identities=24%  Similarity=0.447  Sum_probs=81.2

Q ss_pred             CCCCcEEEEEEec-----c---------CCCceEEEEEEeCCeEEEEccCCC------cccceEEEccCeEEEEccCCCC
Q psy2209          58 DSGSQHSGWLHKK-----S---------GRNWKRYWFVLKDQVMYKYKASED------IKALLSIPVLGYELEALNEQDN  117 (156)
Q Consensus        58 ~~~~~~~G~L~k~-----~---------~k~Wk~r~~vL~~~~L~~yk~~~~------~~~~~~i~L~~~~~~~~~~~~~  117 (156)
                      ...+.++|||.++     +         .+.|+++||||.|+.|+||+++..      ..+.+.|+|.++.+...++..+
T Consensus         8 ~~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga~v~~a~d~~k   87 (279)
T 3a8n_A            8 QGTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPK   87 (279)
T ss_dssp             --CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSCEECCCTTSSS
T ss_pred             CCceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCcEEEeccccCC
Confidence            3457799999764     1         258999999999999999998763      2467889999999987777777


Q ss_pred             ceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         118 FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       118 ~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      ++++|.|.+++++.|+|+|++.++|+.||.+|+.|+.
T Consensus        88 Kk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~  124 (279)
T 3a8n_A           88 KDFVFCLSNSLGDAFLFQTTSQTELENWITAIHSACA  124 (279)
T ss_dssp             SCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHh
Confidence            8899999988999999999999999999999998864

>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*

Probab=99.77  E-value=7.4e-19  Score=136.20  Aligned_cols=93  Identities=12%  Similarity=0.218  Sum_probs=77.1

Q ss_pred             CcEEEEEEeccC--CCceEEEEEE--eCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEE---eCCCccEE
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVL--KDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLK---HQGQDPLV  133 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL--~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~---~~~~~~~~  133 (156)
                      ..++|||+|+|+  +.|++|||||  .++.|+||+++.+..|+|.|.|.++.+...++..+++++|+|.   .++.+.|+
T Consensus       146 ~~keG~L~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p~g~I~L~~~~~~~~~~~~~~~~~f~I~~~~~~~~R~y~  225 (386)
T 3lju_X          146 GYREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIF  225 (386)
T ss_dssp             SEEEEEEEEECSSSCCEEEEEEEEETTTTEEEEEC-----CCSEEEEGGGEEEEECHHHHTSTTCEEEEEEETTEEEEEE
T ss_pred             cccccceeeeccccCCceEEEEEEEcCCCEEEEECCCCccCcccEEEeeccEEEEcccccCCCceEEEEEecCCCceEEE
Confidence            469999999997  5899999999  8999999999999999999999998887755444577899987   25668999


Q ss_pred             EEcCCHHHHHHHHHHHHHHH
Q psy2209         134 FGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       134 ~~a~s~~~~~~Wi~al~~a~  153 (156)
                      |+|+|.+++.+|+.+|+.|.
T Consensus       226 l~A~s~~e~~~Wi~aIr~a~  245 (386)
T 3lju_X          226 IYHEDGKEIVDWFNALRAAR  245 (386)
T ss_dssp             EECSSHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHhhhhcc
Confidence            99999999999999999873

>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}

Probab=99.75  E-value=1.2e-17  Score=124.60  Aligned_cols=95  Identities=19%  Similarity=0.241  Sum_probs=75.8

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEc---cCeEEEEccC-----CCCceeEEEEEeCC
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPV---LGYELEALNE-----QDNFKYVFQLKHQG  128 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L---~~~~~~~~~~-----~~~~~~~f~i~~~~  128 (156)
                      ..+.++|||+++++  +.|++|||||+++.|+||+++.+..+.+.|.|   .++.+.....     ...++|+|.|.+++
T Consensus       166 ~~p~~~G~L~k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~~  245 (291)
T 3tca_A          166 IVPELEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQ  245 (291)
T ss_dssp             CCCCCEEEEEEECTTSSCEEEEEEEECSSEEEECCTTCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEEECTT
T ss_pred             CCCceEEEEEEeCCCCCCceEEEEEEeCCEEEEEecCccccccCceeeccceeEEEEecCccccccCCCCCeEEEEEcCC
Confidence            45679999999986  58999999999999999999888888776665   4455544322     12356999998643


Q ss_pred             -----CccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         129 -----QDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       129 -----~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                           .++|+|+|+|++++..||.||+.|.
T Consensus       246 ~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak  275 (291)
T 3tca_A          246 IQKESQYIKYLCCDDARTLSQWVMGIRIAK  275 (291)
T ss_dssp             CCSCCTTSEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCCCceEEEEECCCHHHHHHHHHHHHHHh
Confidence                 3579999999999999999999875

>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}

Probab=99.75  E-value=3.5e-18  Score=133.34  Aligned_cols=94  Identities=16%  Similarity=0.354  Sum_probs=78.1

Q ss_pred             CCCcEEEEEEecc---C--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCC-CccE
Q psy2209          59 SGSQHSGWLHKKS---G--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG-QDPL  132 (156)
Q Consensus        59 ~~~~~~G~L~k~~---~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~-~~~~  132 (156)
                      ..+.++|||+++.   .  +.|++|||||+++.|+||+.. +..+.+.|+|.+|.+...... +++|||.|.+++ .++|
T Consensus       299 ~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~-~~~~~~~~~l~~~~v~~~~~~-~r~~cF~i~~~~~~~~~  376 (407)
T 4h8s_A          299 NLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRG-AVAGGLIQDLDNCSVMAVDCE-DRRYCFQITTPNGKSGI  376 (407)
T ss_dssp             SCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTT-CSSCCCCBCSSCCEEEEECCT-TCSSEEEEECTTSSCCE
T ss_pred             CcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCC-CCCCCeEEECCceEEEECCCC-CCCceEEEEecCCCceE
Confidence            3467999999873   2  479999999999999999874 445688889999988776544 467999998654 4689


Q ss_pred             EEEcCCHHHHHHHHHHHHHHHh
Q psy2209         133 VFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       133 ~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +|+|+|++++..||.+|+.|..
T Consensus       377 ~l~A~s~~e~~~Wi~ai~~a~~  398 (407)
T 4h8s_A          377 ILQAESRKENEEWICAINNISR  398 (407)
T ss_dssp             EEECSSSHHHHHHHHHHHHHHS
T ss_pred             EEEcCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998864

>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1

Probab=99.74  E-value=6.4e-17  Score=108.60  Aligned_cols=95  Identities=21%  Similarity=0.381  Sum_probs=77.6

Q ss_pred             cEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCC----------------------------------ccc-------
Q psy2209          62 QHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASED----------------------------------IKA-------   98 (156)
Q Consensus        62 ~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~----------------------------------~~~-------   98 (156)
                      .+.|||+++++  +.|.++||||.++.|+|++...+                                  ..+       
T Consensus         2 ~k~G~L~~~~~~~~~w~~~~fvL~~~~L~y~~e~s~~~~~~~~e~~~~~~~~~~~~~~~n~~fh~~~~~~~e~~~~~l~E   81 (150)
T 2fjl_A            2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDQGNEDEEEPKEASGSTELHSSLEVLFQGPNPAILEPEREHLDE   81 (150)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCSCSSCCSCCCCSCCCCCSCCCCCCSSSGGGSSCSTTSCTTCSSSCT
T ss_pred             CcceEEEeecCCCCCceEeEEEEECCEEEEEeeccccccccCcccccccCCchhhcccchhccccCCccccchhHhcccc
Confidence            58999999986  68999999999999999881110                                  011       


Q ss_pred             --------ceEEEccCeEEEEccC-CCCceeEEEEEeCC--CccEEEEcCCHHHHHHHHHHHHHHHhcC
Q psy2209          99 --------LLSIPVLGYELEALNE-QDNFKYVFQLKHQG--QDPLVFGADNEQSYERWMKAMREATTLS  156 (156)
Q Consensus        99 --------~~~i~L~~~~~~~~~~-~~~~~~~f~i~~~~--~~~~~~~a~s~~~~~~Wi~al~~a~~~s  156 (156)
                              +|.|+|.||.+...++ ...++++|.|.++.  .++|+|+|+|+++|.+||.+|+.|+..+
T Consensus        82 ~~~lG~l~kG~IdL~gc~V~~~~~~~~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaIreaa~~a  150 (150)
T 2fjl_A           82 NSPLGDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKIREVAQTA  150 (150)
T ss_dssp             TTTTTTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHHHHHHTTC
T ss_pred             cccccccccceEecCccEEEeccCCCCCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHHHHHHhhC
Confidence                    6999999999998764 34477999998542  4589999999999999999999998653

>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}

Probab=99.73  E-value=2.3e-17  Score=107.77  Aligned_cols=92  Identities=12%  Similarity=0.382  Sum_probs=72.1

Q ss_pred             cEEEEEEe--ccC--C-CceEEEEEEeCCeEEEEccCCCc---ccceEEEccCeEEEE-cc-------CCCCceeEEEEE
Q psy2209          62 QHSGWLHK--KSG--R-NWKRYWFVLKDQVMYKYKASEDI---KALLSIPVLGYELEA-LN-------EQDNFKYVFQLK  125 (156)
Q Consensus        62 ~~~G~L~k--~~~--k-~Wk~r~~vL~~~~L~~yk~~~~~---~~~~~i~L~~~~~~~-~~-------~~~~~~~~f~i~  125 (156)
                      .++|||.+  +++  + +|++|||||.++.|+||+++.+.   .+.+.|+|.....+. +.       .....++.|+|.
T Consensus         2 ~~eGwl~~pk~~~~~k~~Wkkr~~vL~~~kL~~y~~~~~~~~~~p~~~Idl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~   81 (117)
T 2rov_A            2 RLEGWLSLPVRNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADAKEIPRIFQIL   81 (117)
T ss_dssp             CSEEEEECCCCSSSSCCCCCEEEEEEETTEEEEESCHHHHHTTCCSEEECGGGEEEEEECCTTTCSSSCTTTGGGEEEEE
T ss_pred             ceEEEEEeecCCCccCCCcEEEEEEEECCEEEEEECCCCcccCCceEEEECcccEEEEEcccccccccccccCCcEEEEE
Confidence            36899996  443  5 89999999999999999987654   679999996654422 21       222356899997


Q ss_pred             eC-----CCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         126 HQ-----GQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       126 ~~-----~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ..     ..+++||.|+|+++++.||.+|+++.
T Consensus        82 ~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~i  114 (117)
T 2rov_A           82 YANEGISSAKNLLLLANSTEEQQKWVSRLVKKI  114 (117)
T ss_dssp             ECSSSSTTCEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             eCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence            53     35799999999999999999999875

>4f7h_A Fermitin family homolog 2; beta-barrel, membrane binding, integrin activation, cytoplas membrane, cell adhesion; HET: SRT; 1.90A {Homo sapiens} PDB: 2lko_A*

Probab=99.71  E-value=2.1e-16  Score=106.79  Aligned_cols=94  Identities=23%  Similarity=0.435  Sum_probs=78.1

Q ss_pred             CcEEEEEEeccC-----CCceEEEEEEeCCeEEEEccCCC--cccceEEEccCeEEEEccCCCCceeEEEEEeC---CCc
Q psy2209          61 SQHSGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQ---GQD  130 (156)
Q Consensus        61 ~~~~G~L~k~~~-----k~Wk~r~~vL~~~~L~~yk~~~~--~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~---~~~  130 (156)
                      |...+||..-..     |.|++|||+++++.|+|||++.+  ..|.+.|+|.||.+.........+|.+.+..+   +.+
T Consensus        47 PeL~dyLk~~~pk~~tLKgyKryWFv~kd~~LsyYKskEe~~geP~~~I~LrGCEVtpDVnva~~Kf~IkL~vP~~~gm~  126 (173)
T 4f7h_A           47 PELADYIKVFKPKKLTLKGYKQYWCTFKDTSISCYKSKEESSGTPAHQMNLRGCEVTPDVNISGQKFNIKLLIPVAEGMN  126 (173)
T ss_dssp             TCEEEEEEEECCBTTBCCCCEEEEEEEETTEEEEESCGGGCSSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEEE
T ss_pred             hhhHhHHHhhcchhcccccceeEEEEEeCCEEEEEcCHhHhcCCCceEEecCceEEeccccccccceeEEEeccCCCCcc
Confidence            458899987543     59999999999999999999887  56899999999999876544455666665433   567


Q ss_pred             cEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         131 PLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       131 ~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .+++.|+++.++.+||.|++-|+.
T Consensus       127 e~~Lrcd~E~qya~WMAAcrLAsk  150 (173)
T 4f7h_A          127 EIWLRCDNEKQYAHWMAACRLASK  150 (173)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             eeeeecCCHHHHHHHHHHhhhhcc
Confidence            899999999999999999998864

>4bbk_A Kindlin-1, fermitin family homolog 1; PH domain, cell adhesion; 2.10A {Mus musculus}

Probab=99.69  E-value=5.6e-16  Score=103.68  Aligned_cols=95  Identities=24%  Similarity=0.387  Sum_probs=77.1

Q ss_pred             CCcEEEEEEeccC-----CCceEEEEEEeCCeEEEEccCCC--cccceEEEccCeEEEEccCCCCceeEEEEEeC---CC
Q psy2209          60 GSQHSGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASED--IKALLSIPVLGYELEALNEQDNFKYVFQLKHQ---GQ  129 (156)
Q Consensus        60 ~~~~~G~L~k~~~-----k~Wk~r~~vL~~~~L~~yk~~~~--~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~---~~  129 (156)
                      .+..++||.....     |.||++||+++++.|+|||++.+  ..|.+.|+|.||.+.........++.|.|..+   +.
T Consensus        25 iPeL~dyLk~~~pkrltLKgfKryWfv~kDt~LsyYKSkEe~~geP~~~inLrGCEVtPDVnva~~Kf~ikL~ip~~~gm  104 (165)
T 4bbk_A           25 IPKLADYLKLFRPKKLMLKACKQYWFVFKDTSIAYFKNKELEQGEPIEKLNLRGCEIVPDVNVSGRKFGIKLLIPVADGM  104 (165)
T ss_dssp             -CCEEEEEEEEC-------CCEEEEEEEETTEEEEESSGGGTTSCCSEEEECTTCEEEEEEETTTTEEEEEEEEEETTEE
T ss_pred             ChhhHhHHHhhcccccccccceeEEEEEeCCEEEEEcCHHHhcCCCceEEecCccEEecccccccceeeEEEecCCCCcc
Confidence            3568899987543     59999999999999999999877  46799999999999875444456677776433   45


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         130 DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      ..++|.|+++.+..+||.|++-|+.
T Consensus       105 ~e~~LrcdsE~QYa~WMAAcrLAsk  129 (165)
T 4bbk_A          105 NEVYLRCDHEDQYARWMAACILASK  129 (165)
T ss_dssp             EEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred             eeeeeecCCHHHHHHHHHHhhhccc
Confidence            6899999999999999999998864

>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}

Probab=99.61  E-value=1.2e-14  Score=106.39  Aligned_cols=96  Identities=19%  Similarity=0.286  Sum_probs=75.7

Q ss_pred             CCCCcEEEEEEecc--CCCceEEEEEEeCCeEEEEccCCCcccceE---EEccCeEEEEccCCC-----CceeEEEEEeC
Q psy2209          58 DSGSQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDIKALLS---IPVLGYELEALNEQD-----NFKYVFQLKHQ  127 (156)
Q Consensus        58 ~~~~~~~G~L~k~~--~k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~---i~L~~~~~~~~~~~~-----~~~~~f~i~~~  127 (156)
                      ...+..+|||++++  ++.|++|||+|+++.||||+......+.+.   ++|.+..+....+..     ..+++|.|.++
T Consensus       129 s~~P~~~G~L~~ke~~~K~WkkRyfvLr~sgLy~~~k~~sk~~r~l~~~~~L~~~~vy~~~~~kKk~kaPt~~~F~ik~~  208 (256)
T 3hk0_A          129 SSSPEIQGFLHVKELGKKSWKKLYVCLRRSGLYCSTKGTSAAPRHLQLLADLEDSNIFSLIAGRKQYNAPTDHGLCIKPN  208 (256)
T ss_dssp             TSCEEEEEEEEEECTTSSCEEEEEEEEETTEEEEESSTTCCCGGGEEEEECCTTEEEEEESSTHHHHCCSSSEEEEEEET
T ss_pred             CCCCcceeEEEEecCCCCcceEEEEEEeCCEEEEEecCCCCccccceEEEEcCCCEEEEecccccccCCCCCCEEEEEcc
Confidence            34467899999986  369999999999999999997665555443   688998887764322     13599999955


Q ss_pred             CC-----ccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         128 GQ-----DPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       128 ~~-----~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ..     ..++|+|++++++..|+++|+.|.
T Consensus       209 k~~~~~~~~~~lcaede~~~~~W~~aIr~ak  239 (256)
T 3hk0_A          209 KVRNETKELRLLCAEDEQTRTSWMTAFRLLK  239 (256)
T ss_dssp             TCSSCCTTCEEEEESSHHHHHHHHHHHHHHH
T ss_pred             cccCCCceEEEEEeCCHHHHHHHHHHHHHHH
Confidence            33     369999999999999999999874

>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=9.8e-14  Score=89.92  Aligned_cols=94  Identities=16%  Similarity=0.187  Sum_probs=74.3

Q ss_pred             CCCcEEEEEEeccC----CCceEEEEEEeC------CeEEEEccCCCc----ccceEEEccCeEEEEccCCC----Ccee
Q psy2209          59 SGSQHSGWLHKKSG----RNWKRYWFVLKD------QVMYKYKASEDI----KALLSIPVLGYELEALNEQD----NFKY  120 (156)
Q Consensus        59 ~~~~~~G~L~k~~~----k~Wk~r~~vL~~------~~L~~yk~~~~~----~~~~~i~L~~~~~~~~~~~~----~~~~  120 (156)
                      ..+++.|||+.+..    +.|+++||+|.+      ..|-||.+++..    .+...|.|++|..+...+..    +..+
T Consensus        10 e~~vk~G~L~~q~q~~fgkKWrk~w~vLy~~S~~GvaRLE~yd~~ek~~r~~~~rrVIrLsdCisV~~~~~e~~~pk~~~   89 (127)
T 2d9w_A           10 DGAVKQGFLYLQQQQTFGKKWRRFGASLYGGSDCALARLELQEGPEKPRRCEAARKVIRLSDCLRVAEAGGEASSPRDTS   89 (127)
T ss_dssp             CCSSEEEEEEECBCSSSSCBCCEEEEEEECCSSSSCCEEEEECCCSCSSSCSCCEEEECGGGEEEEEECCSCSSSCSSCE
T ss_pred             CccccceEEEecccchhhhhhheeEEEEecCCCCCceeeeeeeccCccccCCCCceEEEhhhCCeEecccCccCCCCcce
Confidence            44789999999763    479999999953      678889986553    45899999998776643332    4559


Q ss_pred             EEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         121 VFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       121 ~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .|.|. +.+++|+|+|++. ++.+||.+|...++
T Consensus        90 aF~l~-T~er~~~laAe~~-E~~~Wi~~ic~~aF  121 (127)
T 2d9w_A           90 AFFLE-TKERLYLLAAPAA-ERGDWVQAICLLAF  121 (127)
T ss_dssp             EEEEE-ESSCEEEEEECHH-HHHHHHHHHHHHHT
T ss_pred             EEEEE-eCCcEEEEEeCcH-HHHHHHHHHHHHhc
Confidence            99998 6778999999965 89999999988764

>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A

Probab=99.57  E-value=2.4e-14  Score=105.97  Aligned_cols=95  Identities=18%  Similarity=0.316  Sum_probs=70.3

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCccc---ceEEEccCeEEEEccC-----CCCceeEEEEEeCC
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKA---LLSIPVLGYELEALNE-----QDNFKYVFQLKHQG  128 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~---~~~i~L~~~~~~~~~~-----~~~~~~~f~i~~~~  128 (156)
                      ..+...|||++++.  +.|++|||+|+++.||||.......+   .+.++|.++.+....+     ....+++|.|.++.
T Consensus       156 ~~pe~~G~L~~k~~~~k~WkkRyfvLr~sgLyy~~K~~sk~~r~l~~l~~L~~~~VY~~~~~kkk~kaPt~~~F~ik~~~  235 (281)
T 4gmv_A          156 TVPEIEGVLWLKDDGKKSWKKRYFLLRASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQ  235 (281)
T ss_dssp             CCCCCEEEEEEECTTSSCEEEEEEEECSSCEEEC---------CCEEEECGGGCEEEEESSHHHHTCCSCSCEEEEECTT
T ss_pred             CCCccEEEEEEECCCCCCCeEEEEEEeCCEEEEEeCCCCCccccceEEEEcCCcEEEEecccccccCCCCCcEEEEecCc
Confidence            44669999999864  69999999999999999887554444   4456888988877532     12246999998532


Q ss_pred             -----CccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         129 -----QDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       129 -----~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                           ...++|+|++++++..|+.||+.|.
T Consensus       236 ~~~~~~~~~~~caede~~~~~Wv~Air~ak  265 (281)
T 4gmv_A          236 IQKKSQYIKYLCCDDVRTLHQWVNGIRIAK  265 (281)
T ss_dssp             CCSCCTTCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cCCCCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence                 3589999999999999999999874

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.56  E-value=7.8e-15  Score=115.20  Aligned_cols=94  Identities=19%  Similarity=0.455  Sum_probs=68.9

Q ss_pred             CCcEEEEEEeccC--CCceEEEEEEe-CCeEEEEccCCCcccceEEEccCeEEEE---ccCCCCceeEEEEEeCCCccE-
Q psy2209          60 GSQHSGWLHKKSG--RNWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEA---LNEQDNFKYVFQLKHQGQDPL-  132 (156)
Q Consensus        60 ~~~~~G~L~k~~~--k~Wk~r~~vL~-~~~L~~yk~~~~~~~~~~i~L~~~~~~~---~~~~~~~~~~f~i~~~~~~~~-  132 (156)
                      .++++|||.|+|+  +.|++|||+|+ ++.|+||+++.+..+.+.|+|.+.++..   ......++++|.|.......+ 
T Consensus         5 ~v~keG~L~K~g~~~k~Wk~r~fvL~~~~~l~yyk~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~I~~~~~~~~~   84 (446)
T 4ejn_A            5 AIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVI   84 (446)
T ss_dssp             CEEEEEEEEEEETTTTEEEEEEEEEETTSBEEEESSCC-------CCCGGGBCTTCEEEEECSSSTTEEEEEEEETTEEE
T ss_pred             eEEEEeeEEeeccccccccceEEEEeeCCEEEEEecCCCCCccCcccccCccccceeecCCCCCCCceeEEEcCCCceee
Confidence            4689999999986  59999999997 8999999999888888998887754321   111123568999985555545 


Q ss_pred             --EEEcCCHHHHHHHHHHHHHHH
Q psy2209         133 --VFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       133 --~~~a~s~~~~~~Wi~al~~a~  153 (156)
                        .|.+++.+++..|+.+|+.+.
T Consensus        85 ~r~~~~~~~ee~e~W~~ai~~~i  107 (446)
T 4ejn_A           85 ERTFHVETPEEREEWTTAIQTVA  107 (446)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHC
T ss_pred             eeEEecCCHHHHHHHHHHHHhhh
Confidence              799999999999999999874

>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A

Probab=99.42  E-value=1.3e-12  Score=87.56  Aligned_cols=92  Identities=12%  Similarity=0.081  Sum_probs=75.3

Q ss_pred             cCCCCcEEEEEEeccCCCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEc
Q psy2209          57 NDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        57 ~~~~~~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      .+..+++.|+|.|+.+-.|++|||+|+++...||-++.....+|.|++.....+....    ...|.|.+++ ++|+|.+
T Consensus        48 ~ge~Ilk~G~v~KrkGl~~kkR~liLT~~PrL~Yvdp~~~~~KGeIpls~~l~ve~k~----~~~F~I~Tp~-RtY~~~d  122 (151)
T 1w1g_A           48 ENNLILKMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQELRPEAKN----FKTFFVHTPN-RTYYLMD  122 (151)
T ss_dssp             TTCCEEEEEEEEEEETTEEEEEEEEEETTTEEEEEETTTTEEEEEECCCTTCEEEESS----SSEEEEEETT-EEEEEEC
T ss_pred             CCCcEEEEEEEEecccCcceeEEEEEcCCceEEEEcCccccccceEecCCCeeEEEcC----CCEEEEECCC-ceEEEEc
Confidence            4556889999999776789999999999999999998888889999997654433322    2389997454 9999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q psy2209         137 DNEQSYERWMKAMREATT  154 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a~~  154 (156)
                      . ...+++|+++|+.+..
T Consensus       123 ~-~~~AqeWv~aI~~~~~  139 (151)
T 1w1g_A          123 P-SGNAHKWCRKIQEVWR  139 (151)
T ss_dssp             T-TSCHHHHHHHHHHHHH
T ss_pred             C-ccCHHHHHHHHHHHHH
Confidence            7 8889999999998754

>2coa_A Protein kinase C, D2 type; protein kinase D2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1

Probab=99.39  E-value=9.2e-12  Score=80.55  Aligned_cols=97  Identities=16%  Similarity=0.267  Sum_probs=78.8

Q ss_pred             CCCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC------CCCceeEEEEEeCCC
Q psy2209          58 DSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE------QDNFKYVFQLKHQGQ  129 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~------~~~~~~~f~i~~~~~  129 (156)
                      +..++++|||-+.+.  +.|||+|++|+...+.+|+++.+.+....|+|.....+....      ....++||.|. +..
T Consensus         5 ~s~vlkeGW~VH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~~~ykeIpL~eIl~v~~~~~~~~l~~~~~~hcFEi~-T~~   83 (125)
T 2coa_A            5 SSGTLREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIV-TAN   83 (125)
T ss_dssp             CCSCSEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEE-CSS
T ss_pred             CCceeecceEEEEccCCccccceeeEecCCeEEEEecCCCCceeeeeehhHeecccccccccccCCCCCCceEEEE-eCC
Confidence            345789999999876  489999999999999999999999999999998776655432      22256999998 678


Q ss_pred             ccEEEEcC-----------CHHHHHHHHHHHHHHHhc
Q psy2209         130 DPLVFGAD-----------NEQSYERWMKAMREATTL  155 (156)
Q Consensus       130 ~~~~~~a~-----------s~~~~~~Wi~al~~a~~~  155 (156)
                      .+||.+++           ..+.+..|..||++|.+.
T Consensus        84 ~~yyVg~~~~~~p~~~sg~g~~~a~~W~~aIrqALmP  120 (125)
T 2coa_A           84 ATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQALMS  120 (125)
T ss_dssp             CCCCEECCSCCCSSSCCCCCSHHHHHHHHHHHHHGGG
T ss_pred             eEEEEccCCCCCCCCcCccccHHHHHHHHHHHhhccC
Confidence            88999874           126799999999999763

>2d9z_A Protein kinase C, NU type; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.33  E-value=4.9e-11  Score=77.38  Aligned_cols=95  Identities=19%  Similarity=0.292  Sum_probs=78.1

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCC------CCceeEEEEEeCCCc
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ------DNFKYVFQLKHQGQD  130 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~------~~~~~~f~i~~~~~~  130 (156)
                      ..++++|||-+.+.  +.|||+|++|+...+.+|.++...+....|+|.....+.....      ...++||+|. +...
T Consensus         6 s~vlkeGWmVH~t~~d~~rKRHYWrLD~K~Itlf~~e~~~k~ykeIpLseIL~v~~~~~~~~~~~~~~phcFEi~-T~~~   84 (129)
T 2d9z_A            6 SGMVKEGWMVHYTSRDNLRKRHYWRLDSKCLTLFQNESGSKYYKEIPLSEILRISSPRDFTNISQGSNPHCFEII-TDTM   84 (129)
T ss_dssp             TTSEEEEEEEEEESSCCCCEEEEEEEESSCEEEESCSSCCSCCCEECTTTCCEECCTTCCCCSSSCSCCCSEEEE-CSSC
T ss_pred             CceeecceEEEEccCCccccceeeEecCCeEEEEecCCCCceeceeeHHHhcccccccCccccCCCCCCceEEEE-ECCE
Confidence            45789999998775  4899999999999999999998888899999988766654322      1245999998 6778


Q ss_pred             cEEEEcCC---------------HHHHHHHHHHHHHHHh
Q psy2209         131 PLVFGADN---------------EQSYERWMKAMREATT  154 (156)
Q Consensus       131 ~~~~~a~s---------------~~~~~~Wi~al~~a~~  154 (156)
                      +||.+++.               .+.+..|..||++|.+
T Consensus        85 ~y~Vge~~~~~~~~~~~~~sg~g~~~a~~We~aIrqALm  123 (129)
T 2d9z_A           85 VYFVGENNGDSSHNPVLAATGVGLDVAQSWEKAIRQALM  123 (129)
T ss_dssp             EEEECBCCSCCSCCTTTTTTTCBHHHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCCCCCCccccccccchHHHHHHHHHHHHhcc
Confidence            88888743               6899999999999975

>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.80  E-value=4.8e-08  Score=64.47  Aligned_cols=96  Identities=19%  Similarity=0.334  Sum_probs=70.9

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCC---cccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEE
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASED---IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~---~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      +.+.|-+..+..  +.-+.|+|+|=++.|.|.+....   -.-+|.++|.+..+...++....+++|.|..+..+.+.+.
T Consensus        28 ii~~s~v~~~~~~~~~~~eR~l~LF~~~Ll~~s~~~~~~~f~~kgklPL~g~~V~~~ed~~~~~~aFeI~g~~~~~i~v~  107 (132)
T 1v61_A           28 VIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIVVH  107 (132)
T ss_dssp             CSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCBCSTTCSSSSSCCCEEEECSSSCEEEEC
T ss_pred             eEEEeeEEEEEcccCcceEEEEEEcCCeEEEEEecCCCceEEEEEEEecceeEEEeccccccCccEEEEecCCCceEEEE
Confidence            455555555432  34467777777666666554322   1238999999998877666666789999996666889999


Q ss_pred             cCCHHHHHHHHHHHHHHHhcC
Q psy2209         136 ADNEQSYERWMKAMREATTLS  156 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~~~s  156 (156)
                      |.|.+|++.|+.+|+.+...+
T Consensus       108 ~~s~eE~~~Wl~~L~~~i~~~  128 (132)
T 1v61_A          108 CNNNQDFQEWMEQLNRLTKSG  128 (132)
T ss_dssp             CCCSHHHHHHHHHHHHHHTTS
T ss_pred             eCCHHHHHHHHHHHHHHHhhc
Confidence            999999999999999988654

>3ml4_A Protein DOK-7; tyrosine phosphorylation, adapter protein, dimerization, SIG protein; HET: PTR; 2.60A {Mus musculus}

Probab=98.77  E-value=1.7e-07  Score=66.44  Aligned_cols=91  Identities=18%  Similarity=0.312  Sum_probs=68.5

Q ss_pred             CcEEEEEEeccCCCceEEEEEEeC------C-eEEEEccCCCc----ccceEEEccCeEEEE-ccCCCCceeEEEEEeCC
Q psy2209          61 SQHSGWLHKKSGRNWKRYWFVLKD------Q-VMYKYKASEDI----KALLSIPVLGYELEA-LNEQDNFKYVFQLKHQG  128 (156)
Q Consensus        61 ~~~~G~L~k~~~k~Wk~r~~vL~~------~-~L~~yk~~~~~----~~~~~i~L~~~~~~~-~~~~~~~~~~f~i~~~~  128 (156)
                      ++.+|+.+.+.+|.|+.|||||+.      . .|..|++..+.    .++..+.|.++.-.. ...-++..+.+.|. ..
T Consensus         9 ~v~eg~vk~r~~KkWk~rw~vlrk~s~~adcl~L~vYkd~~dr~k~~~~KaslsL~~~~GlE~g~~ldk~s~TlAII-c~   87 (224)
T 3ml4_A            9 ALVEGQVKLRDGKKWKSRWLVLRKPSPVADCLLMLVYKDKCERSKGLRERSSLTLEDICGLEPALPYEGLAHTLAII-CL   87 (224)
T ss_dssp             CSEEEEEEEC---CCEEEEEEEECSSTTSSCEEEEEESSSHHHHSCCCCSEEEEECCEEEEEEEEEETTEEEEEEEE-ES
T ss_pred             eeEEEeeeeecCCceeeEEEEEEcCCCchheEEEEEEcChhhhhcCCcccceeehHHhcCccccccccCcccEEEEE-ec
Confidence            568999999999999999999962      2 68889887663    347888887665443 33344567999998 55


Q ss_pred             CccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         129 QDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       129 ~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      ..++.|++++.+.+..|...|+..
T Consensus        88 d~~~vLAFds~e~l~~W~~~l~~s  111 (224)
T 3ml4_A           88 SQAVMLGFDSHEAMCAWDTRIRYA  111 (224)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCHHHHHHHHHHHhhc
Confidence            566899999999999999998754

>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1

Probab=98.65  E-value=1.7e-07  Score=61.04  Aligned_cols=95  Identities=14%  Similarity=0.198  Sum_probs=72.4

Q ss_pred             CCcEEEEEEecc----------CCCceEEEEEEeC------CeEEEEccCCCcccceEEEccCeEEEE---ccCCCCcee
Q psy2209          60 GSQHSGWLHKKS----------GRNWKRYWFVLKD------QVMYKYKASEDIKALLSIPVLGYELEA---LNEQDNFKY  120 (156)
Q Consensus        60 ~~~~~G~L~k~~----------~k~Wk~r~~vL~~------~~L~~yk~~~~~~~~~~i~L~~~~~~~---~~~~~~~~~  120 (156)
                      ...++|.|..-.          ...|.+++++|..      ..|-||..++..+|+..|++..+.-+.   ..+-+++.+
T Consensus        17 e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~i~cs~I~EVR~tt~LEmPD~~n   96 (136)
T 1v5m_A           17 DIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKDN   96 (136)
T ss_dssp             SCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCBCCCCCCSSSCCCTT
T ss_pred             eeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCccccchhhhhhhhhccccccCCccc
Confidence            456888886531          1389999999942      468889999999999999887653332   122244568


Q ss_pred             EEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         121 VFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       121 ~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .|.|...+...|+|.|.++.+++.|++.|+.+..
T Consensus        97 TFVlK~~n~~eyi~ea~d~~q~~sWla~Ir~C~~  130 (136)
T 1v5m_A           97 TFVLKVENGAEYILETIDSLQKHSWVADIQGCVD  130 (136)
T ss_dssp             EECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEecCCcEEEEEcCCHHHHHHHHHHHHhhcC
Confidence            9999866666899999999999999999988764

>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*

Probab=98.58  E-value=2.4e-06  Score=54.91  Aligned_cols=92  Identities=14%  Similarity=0.191  Sum_probs=66.7

Q ss_pred             CcEEEEEEeccCCCc---eEEEEEEeCCeEEEEcc-CCC---cccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEE
Q psy2209          61 SQHSGWLHKKSGRNW---KRYWFVLKDQVMYKYKA-SED---IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLV  133 (156)
Q Consensus        61 ~~~~G~L~k~~~k~W---k~r~~vL~~~~L~~yk~-~~~---~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  133 (156)
                      .+++|.|.+.....+   ++++|.|=++.|.|-.. ...   ..-...++|.+..++..++....++.|.|. ...+.+.
T Consensus         8 lv~eG~l~el~~~~~k~~~~v~~FLfND~Ll~a~~~~~~~~~~~~~~~~~L~~~~v~d~~d~~~~~n~f~i~-~~~~s~~   86 (113)
T 1zc3_B            8 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLL-MFPESRI   86 (113)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBTTBSSEEEEE-ETTEEEE
T ss_pred             EEEeCcEEEEccccCCCCccEEEEecCCEEEEEEEeccCcccEEEEEEEEcccCEEEECCCCcccceEEEEE-eCCceEE
Confidence            357898887665444   44566665555555443 221   122556788888888777776678999998 5667899


Q ss_pred             EEcCCHHHHHHHHHHHHHHH
Q psy2209         134 FGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       134 ~~a~s~~~~~~Wi~al~~a~  153 (156)
                      |+|++.++..+|+.+|++|.
T Consensus        87 ~~aes~~eK~~Wl~~~~~a~  106 (113)
T 1zc3_B           87 FQAENAKIKREWLEVLEETK  106 (113)
T ss_dssp             EECSSHHHHHHHHHHHHHHH
T ss_pred             EEcCCHHHHHHHHHHHHHHH
Confidence            99999999999999999885

>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}

Probab=98.48  E-value=3.8e-07  Score=65.69  Aligned_cols=48  Identities=21%  Similarity=0.427  Sum_probs=36.7

Q ss_pred             cCCCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEc
Q psy2209          57 NDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPV  104 (156)
Q Consensus        57 ~~~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L  104 (156)
                      ..+.+.+.|||.++++  +.|++|||||+++.|.||+...+....|.+..
T Consensus        17 ~~~~~~~~g~l~~~~~~~~~w~~rw~vl~~~~~~~~~~~~~~~k~G~L~K   66 (228)
T 3tfm_A           17 GPGSPYFHSFLYMNGGLMNSWKRRWCVLKDETFLWFRSKQEALKQGWLHN   66 (228)
T ss_dssp             ----CCEEEEEEECCTTTCCCEEEEEEEETTEEEEESSCCCSSEEEEEEE
T ss_pred             CCCCCceEEEEeecCcccccceEEEEEEeCCEEEEeccCCCcceEEEEEE
Confidence            4456789999999987  59999999999999999998766554555443

>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1

Probab=98.40  E-value=1.3e-05  Score=52.67  Aligned_cols=88  Identities=11%  Similarity=0.192  Sum_probs=60.1

Q ss_pred             EEEeccCCCc-eEEEEEEeC-CeEEEEccCC--CcccceEEEccCeEEEEccC----------CCCceeEEEEEeCCC-c
Q psy2209          66 WLHKKSGRNW-KRYWFVLKD-QVMYKYKASE--DIKALLSIPVLGYELEALNE----------QDNFKYVFQLKHQGQ-D  130 (156)
Q Consensus        66 ~L~k~~~k~W-k~r~~vL~~-~~L~~yk~~~--~~~~~~~i~L~~~~~~~~~~----------~~~~~~~f~i~~~~~-~  130 (156)
                      .|.|-..+.| +.|||.|.. +..+||.+..  .....+.|+|.....+....          ......+|.|.+.+. +
T Consensus        18 ~l~K~~~~~~~k~r~f~l~~~~~~~w~~s~~~~~~~~~~~i~i~~I~eIr~G~~s~~~~~~~~~~~~~~~FsIiy~~~~k   97 (131)
T 1mai_A           18 QLLKVKSSSWRRERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFKDQRN   97 (131)
T ss_dssp             EEEEESSSSCEEEEEEEECTTSSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEESSSCC
T ss_pred             eEEEECCCCcceeEEEEECCCCCEEEeCCcCCCCCCcCcEEEHhhhHHHHCCCCCHHHHhhhhcCCccceEEEEECCCCc
Confidence            4445444554 667888865 4455553211  23357899998876665432          112458999997764 7


Q ss_pred             cEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         131 PLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       131 ~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ++.|.|+|.+++..|+..|+...
T Consensus        98 ~LdlvA~s~~e~~~Wv~gL~~L~  120 (131)
T 1mai_A           98 TLDLIAPSPADAQHWVQGLRKII  120 (131)
T ss_dssp             CEEEECSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCHHHHHHHHHHHHHHH
Confidence            89999999999999999998654

>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A

Probab=98.21  E-value=2.8e-05  Score=59.15  Aligned_cols=92  Identities=14%  Similarity=0.242  Sum_probs=71.2

Q ss_pred             CcEEEEEEeccCCCceEEEEEEeCCeEEEEccCCC-----------cccceEEEccCeEEEEccCCCCceeEEEEEeCCC
Q psy2209          61 SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED-----------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ  129 (156)
Q Consensus        61 ~~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~-----------~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~  129 (156)
                      ..++|.|.+.+  .++.|++.|=++.|.+-+....           -.-++.|+|.+..+....+....++.|.|...++
T Consensus       247 li~eG~l~~~g--~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~d~~~~~~~F~i~~~~~  324 (354)
T 1dbh_A          247 FIMEGTLTRVG--AKHERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDE  324 (354)
T ss_dssp             EEEEEEEEETT--CSSCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSSSCCSEEEECCTTS
T ss_pred             EEEEeeEEEEe--cCceEEEEEeCCEEEEEecCCCCCCCCCCCCcceeEEEEEeccceEEEeCCcccccCccEEEecCCC
Confidence            46899998884  5677888887777777765321           0125789999998887766555678999986555


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         130 DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      ..|.|+|.|.++...|+.+|+.+..
T Consensus       325 ~~~~l~a~s~~ek~~W~~~i~~~~~  349 (354)
T 1dbh_A          325 NSVIFSAKSAEEKNNWMAALISLQY  349 (354)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            7899999999999999999998764

>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}

Probab=98.20  E-value=8.9e-06  Score=63.54  Aligned_cols=91  Identities=15%  Similarity=0.264  Sum_probs=66.3

Q ss_pred             CcEEEEEEeccCCCceEEEEEEeCCeEEEEccCCCc--ccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCC
Q psy2209          61 SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDI--KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  138 (156)
Q Consensus        61 ~~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~--~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s  138 (156)
                      .+++|.|.+..++.++.+|+.|=++.|.+-+.....  .-++.|+|.+..+.... ....++.|.|. ...+.|.|+|.|
T Consensus       244 li~~g~l~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~y~~k~~i~L~~l~v~~~~-~~~~~~~f~i~-~~~~~~~l~a~s  321 (434)
T 3mpx_A          244 FLKEGTLMKVTGKNRRPRHLFLMNDVLLYTYPQKDGKYRLKNTLAVANMKVSRPV-MEKVPYALKIE-TSESCLMLSASS  321 (434)
T ss_dssp             EEECCEEEEEETTEEEEEEEEEESSEEEEEEECTTSCEEEEEEEEC-----CCCC-CTTSCSEEEEE-CSSCEEEEECSS
T ss_pred             eEecceEEEEeCCCceEEEEEEECCEEEEEEecCCCeEEEEEEEEcCCcEEEecC-CCCCCeeEEEe-cCCeEEEEecCC
Confidence            357899988777778899999988888888754322  23678888887775432 23467999997 566789999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy2209         139 EQSYERWMKAMREAT  153 (156)
Q Consensus       139 ~~~~~~Wi~al~~a~  153 (156)
                      .++...|+.+|+.|.
T Consensus       322 ~~ek~~W~~~i~~ai  336 (434)
T 3mpx_A          322 CAERDEWYGCLSRAL  336 (434)
T ss_dssp             HHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999875

>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}

Probab=98.13  E-value=2.7e-05  Score=54.25  Aligned_cols=93  Identities=11%  Similarity=0.157  Sum_probs=64.2

Q ss_pred             CCcEEEEEEecc-CCCceEEEEEEeCCeEEEEccCCCcc-------cceEEEccCeEEEEccCCCCceeEEEEEe--CCC
Q psy2209          60 GSQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDIK-------ALLSIPVLGYELEALNEQDNFKYVFQLKH--QGQ  129 (156)
Q Consensus        60 ~~~~~G~L~k~~-~k~Wk~r~~vL~~~~L~~yk~~~~~~-------~~~~i~L~~~~~~~~~~~~~~~~~f~i~~--~~~  129 (156)
                      ..+++|-|..+. .+.++.+|+.|=++.|.+-...++..       ....|.|.+..+......  .+..|.|..  .+.
T Consensus        70 ~Ll~eG~L~~k~~~~~~~d~~~fLf~D~Ll~~~~~~~ky~~~~~~~~~pvi~L~~~~vre~a~d--~~~~fli~~~~~g~  147 (185)
T 2lg1_A           70 KLVRDGSVFLKNAAGRLKEVQAVLLTDILVFLQEKDQKYIFASLDQKSTVISLKKLIVREVAHE--EKGLFLISMGMTDP  147 (185)
T ss_dssp             CEEEEEEEEEECTTCCEEEEEEEEESSEEECCEEETTEEECCCCSSSCSEEESSSCEEECCSSC--SSEEEEECCSSSCC
T ss_pred             ceeeeceEEEeccCCCeeeEEEEeecCEEEEEEecCCEEEEEcccCCCCeEeecceEEeccCCC--CCeEEEEEecCCCC
Confidence            457999997544 45789999998777666654322211       125678888877654432  234555542  246


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         130 DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +.|.|.|.|.++.+.|+.+|+.|..
T Consensus       148 ~~yel~a~s~~er~~W~~~I~~Ai~  172 (185)
T 2lg1_A          148 EMVEVHASSKEERNSWIQIIQDTIN  172 (185)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            7899999999999999999998863

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.05  E-value=9.1e-05  Score=61.82  Aligned_cols=92  Identities=23%  Similarity=0.408  Sum_probs=69.9

Q ss_pred             CcEEEEEEeccC----CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCC-CCceeEEEEEeCCCc-----
Q psy2209          61 SQHSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ-DNFKYVFQLKHQGQD-----  130 (156)
Q Consensus        61 ~~~~G~L~k~~~----k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~-~~~~~~f~i~~~~~~-----  130 (156)
                      +...|||.....    .+-+.+||||+...|.||+++.+...+-.++|.+......... ..+++.|.|..++.+     
T Consensus       540 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  619 (772)
T 3zvr_A          540 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKD  619 (772)
T ss_dssp             EEEEEEEEESSSCCC---CCEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEC-------CEEEEEEETTSSCSBTT
T ss_pred             ceeeeeeeecccccccCCCccceeeccccccccccchhhhcccccccccccccchhhhccccccccccccCCccccccch
Confidence            678899998643    3679999999999999999977777788889988776655432 235689999877665     


Q ss_pred             --cEEEEcCCHHHHHHHHHHHHHH
Q psy2209         131 --PLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       131 --~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                        .+-|+|+++++...|...+-+|
T Consensus       620 ~~~~~l~~~~~~~~~~~~~~~~~~  643 (772)
T 3zvr_A          620 YRQLELACETQEEVDSWKASFLRA  643 (772)
T ss_dssp             BSEEEEEESSHHHHHHHHHHHHHT
T ss_pred             hhhhhhhccccccchhhHHhhhhc
Confidence              4569999999999999988443

>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}

Probab=98.01  E-value=0.00015  Score=47.95  Aligned_cols=81  Identities=15%  Similarity=0.172  Sum_probs=57.4

Q ss_pred             CCCceEEEEEEeCCeEEEEc-----cC-CCcccceEEEccCeEEEEccCCCCceeEEEEEeCC-----CccEEEEcCCHH
Q psy2209          72 GRNWKRYWFVLKDQVMYKYK-----AS-EDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG-----QDPLVFGADNEQ  140 (156)
Q Consensus        72 ~k~Wk~r~~vL~~~~L~~yk-----~~-~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~-----~~~~~~~a~s~~  140 (156)
                      +++-+.|+|-|=.+.|.|-+     .. ..-.-.+.++|.|..+...... ..+++|.|..+.     ...+.|+|.|.+
T Consensus        30 ~kg~qqR~~FLFND~LL~TK~~~kkk~~~~Y~vr~~~~L~gm~V~~~e~e-~~p~~~~l~s~~~G~~~k~~i~~~A~s~~  108 (140)
T 3qwm_A           30 KLGLHQREIFLFNDLLVVTKIFQKKKNSVTYSFRQSFSLYGMQVLLFENQ-YYPNGIRLTSSVPGADIKVLINFNAPNPQ  108 (140)
T ss_dssp             CTTTTEEEEEEESSCEEEEECCC---CCCCCCCEEEECCTTEEEEEECCS-SCTTEEEEEECCTTSCCEEEEEEECSSHH
T ss_pred             cccccceEEEEecchhhheeecccCCCCCceEEEEEeeecceEEEcccCC-CCceEEEEEecCCCCcceEEEEEECCCHH
Confidence            44566776666555555543     11 1122378889999988776444 478999998543     267999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy2209         141 SYERWMKAMREAT  153 (156)
Q Consensus       141 ~~~~Wi~al~~a~  153 (156)
                      |+..|+++|+.+.
T Consensus       109 ER~rwi~dL~esI  121 (140)
T 3qwm_A          109 DRKKFTDDLRESI  121 (140)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999874

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=97.99  E-value=0.00023  Score=56.13  Aligned_cols=93  Identities=19%  Similarity=0.230  Sum_probs=69.6

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCc----ccceEEEccCeEEEEccCCC------CceeEEEEEeCC
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI----KALLSIPVLGYELEALNEQD------NFKYVFQLKHQG  128 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~----~~~~~i~L~~~~~~~~~~~~------~~~~~f~i~~~~  128 (156)
                      .+++|.|.+...  +..+.|++.|=++.|.+-+.....    .-++.|+|.+..+....+..      ..++.|.|....
T Consensus       334 li~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~  413 (466)
T 2pz1_A          334 LIYSGELTRVTQPQAKSQQRMFFLFDHQLIYCKKDLLRRDVLYYKGRLDMDGLEVVDLEDGKDRDLHVSIKNAFRLHRGA  413 (466)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEEEETTEEEEEEECSSCTTCEEEEEEEETTTCEEEECCSBSCCSSCCCBCEEEEEECSS
T ss_pred             eEEeeeEEEEecCCCCeeEEEEEEECCEEEEEEeccccCCceEEeeeeeccceEEEeCCCCcccccccccceeEEEEeCC
Confidence            568999987654  467888888888888877653221    12678999988887655432      235899998543


Q ss_pred             -CccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         129 -QDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       129 -~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                       ...|.|+|.|.++...|+.+|+.+.
T Consensus       414 ~~~~~~l~a~s~~eK~~W~~~i~~a~  439 (466)
T 2pz1_A          414 TGDSHLLCTRKPEQKQRWLKAFARER  439 (466)
T ss_dssp             SCCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence             5689999999999999999998875

>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1

Probab=97.92  E-value=0.00023  Score=55.19  Aligned_cols=93  Identities=20%  Similarity=0.198  Sum_probs=68.7

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCc----ccceEEEccCeEEEEccCCC------CceeEEEEEeCC
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDI----KALLSIPVLGYELEALNEQD------NFKYVFQLKHQG  128 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~----~~~~~i~L~~~~~~~~~~~~------~~~~~f~i~~~~  128 (156)
                      .+++|.|.+...  +..+.|++.|=++.|.+-+.....    .-++.|+|.+..+....+..      ..++.|.|....
T Consensus       257 Li~~G~l~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~k~~i~l~~~~v~~~~d~~~~~~~~~~~~~F~i~~~~  336 (402)
T 2dfk_A          257 LIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKE  336 (402)
T ss_dssp             EEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESS
T ss_pred             eEEeceEEEEeccCCceEEEEEEeeCCEEEEEEeccccCCceEEeeeeeccceEEEecCCCCccccccccceeEEEEECC
Confidence            468999987654  357888988888888777653221    12678899888877654432      124789998653


Q ss_pred             -CccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         129 -QDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       129 -~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                       ...|.|+|.|.++...|+.+|+.+.
T Consensus       337 ~~~~~~l~a~s~~eK~~Wi~~i~~a~  362 (402)
T 2dfk_A          337 TEEVHLFFAKKLEEKIRWLRAFREER  362 (402)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence             5689999999999999999998764

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=97.90  E-value=0.00026  Score=54.77  Aligned_cols=93  Identities=16%  Similarity=0.232  Sum_probs=67.3

Q ss_pred             CcEEEEEEecc--CCCceEEEEEEeCCeEEEEccCCCc-ccceEEEccCeEEEEccCCC----CceeEEEEEeC-CCccE
Q psy2209          61 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDI-KALLSIPVLGYELEALNEQD----NFKYVFQLKHQ-GQDPL  132 (156)
Q Consensus        61 ~~~~G~L~k~~--~k~Wk~r~~vL~~~~L~~yk~~~~~-~~~~~i~L~~~~~~~~~~~~----~~~~~f~i~~~-~~~~~  132 (156)
                      ..+.|.|....  ++.++.+++.|=++.|.+-+..++. .-+..|+|....+...++..    ..++.|.|... +.+.|
T Consensus       234 li~~G~l~~~~~~~~~~~~~~~fLF~d~Ll~~k~k~~~y~~k~~i~l~~~~v~~~~~~~~~~~~~~~~F~i~~~~~~~~~  313 (406)
T 2vrw_B          234 PKIDGELKITSVERRSKTDRYAFLLDKALLICKRRGDSYDLKASVNLHSFQVRDDSSGERDNKKWSHMFLLIEDQGAQGY  313 (406)
T ss_dssp             EEEEEEEEEECSSCCSCEEEEEEEESSEEEEEEEETTEEEEEEEEETTTEEEEC--------CTTCEEEEEEETTCSCEE
T ss_pred             ccccccEEEEecCCCccceEEEEecCCEEEEEEecCCceEEEEEecccceeeeecCCCCccCCccceeeEEEecCCCceE
Confidence            46889998764  3467889988888888777654322 22678888888776544332    23589999864 55689


Q ss_pred             EEEcCCHHHHHHHHHHHHHHH
Q psy2209         133 VFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       133 ~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      .|+|.|.++...|+++|+.|.
T Consensus       314 ~l~a~s~~ek~~W~~~i~~ai  334 (406)
T 2vrw_B          314 ELFFKTRELKKKWMEQFEMAI  334 (406)
T ss_dssp             EEEESSHHHHHHHHHHHHHHH
T ss_pred             EEeCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999875

>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}

Probab=97.78  E-value=0.00062  Score=52.81  Aligned_cols=91  Identities=12%  Similarity=0.135  Sum_probs=65.1

Q ss_pred             CcEEEEEEeccC-CCceEEEEEEeCCeEEEEccCCCc------------------ccceEEEccCeEEEEccCCCCceeE
Q psy2209          61 SQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDI------------------KALLSIPVLGYELEALNEQDNFKYV  121 (156)
Q Consensus        61 ~~~~G~L~k~~~-k~Wk~r~~vL~~~~L~~yk~~~~~------------------~~~~~i~L~~~~~~~~~~~~~~~~~  121 (156)
                      .+++|.|.++.. +.++.+++.|=++.|.+.+...+.                  .-...|+|.+..+......   +..
T Consensus       295 li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~k~~i~l~~~~v~~~~~~---~~~  371 (418)
T 3t06_A          295 MIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVATD---KRA  371 (418)
T ss_dssp             EEEEEEEEECCBTTBCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSSC---SSE
T ss_pred             eEEeceEEEEeCCCCeEEEEEEecCCEEEEEEEcCCceEEeecccccccCCCcccccCCceechhceecccccc---Cce
Confidence            568999987764 468889998888888777643321                  0146788888777644322   245


Q ss_pred             EEEEeCC----CccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         122 FQLKHQG----QDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       122 f~i~~~~----~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |.|....    .+.|.|+|.|.++.+.|+.+|++|..
T Consensus       372 f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~  408 (418)
T 3t06_A          372 FFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVR  408 (418)
T ss_dssp             EEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHh
Confidence            6665432    26899999999999999999998864

>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*

Probab=97.70  E-value=0.0013  Score=50.07  Aligned_cols=92  Identities=12%  Similarity=0.098  Sum_probs=64.9

Q ss_pred             CcEEEEEEecc-CCCceEEEEEEeCCeEEEEccCCCc------------------ccceEEEccCeEEEEccCCCCceeE
Q psy2209          61 SQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDI------------------KALLSIPVLGYELEALNEQDNFKYV  121 (156)
Q Consensus        61 ~~~~G~L~k~~-~k~Wk~r~~vL~~~~L~~yk~~~~~------------------~~~~~i~L~~~~~~~~~~~~~~~~~  121 (156)
                      .+++|.|..+. ++.++.+++.|=++.|.+.+...+.                  .-.+.|+|.+..+.....   .+..
T Consensus       253 li~~G~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~---~~~~  329 (368)
T 1xcg_A          253 MIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT---DKRA  329 (368)
T ss_dssp             EEEEEEEEECCSSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSS---CSSE
T ss_pred             EEeecceEeeecCCCeeEEEEEcccccHHHhhcccccceeeeccccccCCCCcccCcCCceEccceeeecccC---CCce
Confidence            46899998764 3568889988887777776643211                  115678888876655322   2346


Q ss_pred             EEEEeCC----CccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         122 FQLKHQG----QDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       122 f~i~~~~----~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      |.|....    ...|.|+|.|.++.+.|+.+|+.|..-
T Consensus       330 f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai~~  367 (368)
T 1xcg_A          330 FFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  367 (368)
T ss_dssp             EEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence            6665432    468999999999999999999998753

>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A

Probab=97.67  E-value=0.00072  Score=51.92  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=63.5

Q ss_pred             CcEEEEEEeccC-CCceEEEEEEeCCeEEEEccCCCc------------------ccceEEEccCeEEEEccCCCCceeE
Q psy2209          61 SQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDI------------------KALLSIPVLGYELEALNEQDNFKYV  121 (156)
Q Consensus        61 ~~~~G~L~k~~~-k~Wk~r~~vL~~~~L~~yk~~~~~------------------~~~~~i~L~~~~~~~~~~~~~~~~~  121 (156)
                      .+++|.|..+.. +.++.+++.|=++.|.+-+...+.                  .-.+.|+|.+..+......  .+..
T Consensus       257 li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~v~~~~~d--~~~~  334 (385)
T 1txd_A          257 MIHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVATD--NKAL  334 (385)
T ss_dssp             EEEEEEEEEESSSSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC---CCEE
T ss_pred             EEEECcEEEEcCCCCeEEEEEEecCCeeEEEEecCCeeEEeeccccccccCCCCcCCCCceecccccccccccC--CceE
Confidence            468999986543 467888888877777776543221                  1146788888776554322  2356


Q ss_pred             EEEEe--CCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         122 FQLKH--QGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       122 f~i~~--~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |.|..  .+...|.|+|.|.++.+.|+.+|+.|..
T Consensus       335 f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~  369 (385)
T 1txd_A          335 FVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  369 (385)
T ss_dssp             EEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            66653  3457899999999999999999998753

>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A

Probab=97.65  E-value=0.0004  Score=52.55  Aligned_cols=90  Identities=20%  Similarity=0.329  Sum_probs=64.1

Q ss_pred             CcEEEEEEeccCCCceEEEEEEeCCeEEEEccCC--Ccc----cceEEEccCeEEEEccCCC---------------Cce
Q psy2209          61 SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASE--DIK----ALLSIPVLGYELEALNEQD---------------NFK  119 (156)
Q Consensus        61 ~~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~--~~~----~~~~i~L~~~~~~~~~~~~---------------~~~  119 (156)
                      ..++|.|.+..+   +.+++.|=++.|.+-+...  +..    -++.|+|.+..+....+..               ..+
T Consensus       232 li~~G~l~~~~~---~~~~~fLF~d~Ll~~k~~~~~~~~~~~v~k~~i~l~~l~v~~~~d~~~~~~~s~~g~~~~~~~~~  308 (346)
T 2z0q_A          232 LCCHGELKNNRG---VKLHVFLFQEVLVITRAVTHNEQLCYQLYRQPIPVKDLTLEDLQDGEVRLGGSLRGAFSNNERVK  308 (346)
T ss_dssp             EEEEEEEEETTS---CEEEEEEESSEEEEEEEEEETTEEEEEESSCCEEGGGCEEEECCTTTSCCCSCC--CCSHHHHTS
T ss_pred             EEEeceeEECCC---cEEEEEECCCcEEEEEEeccCCceeeeeecCCcchhhceeeecCCCccccCccccccccCCcccc
Confidence            357899876432   6778888777777766422  110    2567888888877665431               135


Q ss_pred             eEEEEEeC---CCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         120 YVFQLKHQ---GQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       120 ~~f~i~~~---~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      +.|.|.+.   ....|.|+|.|.++...|+.+|+.|.
T Consensus       309 ~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  345 (346)
T 2z0q_A          309 NFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK  345 (346)
T ss_dssp             SEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence            78999753   35689999999999999999999885

>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A

Probab=97.64  E-value=0.00068  Score=54.50  Aligned_cols=92  Identities=12%  Similarity=0.103  Sum_probs=62.3

Q ss_pred             CcEEEEEEeccC-CCceEEEEEEeCCeEEEEccCCCcc------------------cceEEEccCeEEEEccCCCCceeE
Q psy2209          61 SQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDIK------------------ALLSIPVLGYELEALNEQDNFKYV  121 (156)
Q Consensus        61 ~~~~G~L~k~~~-k~Wk~r~~vL~~~~L~~yk~~~~~~------------------~~~~i~L~~~~~~~~~~~~~~~~~  121 (156)
                      .+++|.|.++.. +.++.++|.|=++.|.+.+...+..                  -...|+|.+..+.......  ...
T Consensus       412 LI~eG~l~~~~~~~k~~~r~~fLF~D~LL~~k~k~~ky~~k~~~~~~~~~~d~k~~~~~~i~L~~l~v~e~~~d~--~~f  489 (536)
T 3odw_A          412 LVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDH--KAF  489 (536)
T ss_dssp             EEEEEEEEEESCC---CEEEEEEESSEEEEEEEETTEEECCCC------------CCCSEEEGGGEEEEECTTCT--TEE
T ss_pred             eeeecceEEEecCCCeeEEEEEEcCCEEEEEEEcCCeEEEeecccccccccccccccCceeecccceeecccccC--Cce
Confidence            568999977654 4788999988777777766432210                  0235888888776654332  234


Q ss_pred             EEEEe--CCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         122 FQLKH--QGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       122 f~i~~--~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |.+..  .+...|.|+|.|.++.+.|+..|+.|..
T Consensus       490 fli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI~  524 (536)
T 3odw_A          490 YVLFTWDQEAQIYELVAQTVSERKNWCALITETAG  524 (536)
T ss_dssp             EEEEC---CCCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCceEEEEECCCHHHHHHHHHHHHHHHH
Confidence            44442  2557899999999999999999999875

>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A

Probab=97.60  E-value=0.0007  Score=51.75  Aligned_cols=92  Identities=12%  Similarity=0.103  Sum_probs=64.6

Q ss_pred             CcEEEEEEecc-CCCceEEEEEEeCCeEEEEccCCCcc------------------cceEEEccCeEEEEccCCCCceeE
Q psy2209          61 SQHSGWLHKKS-GRNWKRYWFVLKDQVMYKYKASEDIK------------------ALLSIPVLGYELEALNEQDNFKYV  121 (156)
Q Consensus        61 ~~~~G~L~k~~-~k~Wk~r~~vL~~~~L~~yk~~~~~~------------------~~~~i~L~~~~~~~~~~~~~~~~~  121 (156)
                      .+++|.|..+. ++.++.|++.|=++.|.+.+..++..                  ....|+|.+..+.......  ...
T Consensus       259 li~eG~l~~~~~~~~~~~~~~fLF~d~Ll~~k~k~~k~~~k~~~~~~~~~~~~k~~~~~~i~l~~~~v~e~~~~~--~~~  336 (377)
T 3p6a_A          259 LVHEGPLTWRVTKDKAVEVHVLLLDDLLLLLQRQDERLLLKSHSRTLTPTPDGKTMLRPVLRLTSAMTREVATDH--KAF  336 (377)
T ss_dssp             EEEEEEEEEESSSSCEEEEEEEEESSEEEEEEEETTEEECCCCCCC---------CSCSEEEGGGEEEEECTTCT--TEE
T ss_pred             EEEECCcEEEecCCCeEEEEEEeeCCEEEEEEEcCceeEEeecccccccCccccCCCCCeEechhhhcccccccc--cee
Confidence            56899997655 34788999998887777776432210                  0236888887766643332  345


Q ss_pred             EEEEe--CCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         122 FQLKH--QGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       122 f~i~~--~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |.+..  .+...|.|.|.|.++.+.|+..|+.|..
T Consensus       337 ~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~  371 (377)
T 3p6a_A          337 YVLFTWDQEAQIYELVAQTVSERKNWCALITETAG  371 (377)
T ss_dssp             EEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHH
Confidence            65653  2556789999999999999999999864

>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A

Probab=97.60  E-value=0.001  Score=53.96  Aligned_cols=93  Identities=14%  Similarity=0.164  Sum_probs=67.7

Q ss_pred             CcEEEEEEecc--CCCceEEEEEEeCCeEEEEccCCCc-ccceEEEccCeEEEEccCC----CCceeEEEEEeCC-CccE
Q psy2209          61 SQHSGWLHKKS--GRNWKRYWFVLKDQVMYKYKASEDI-KALLSIPVLGYELEALNEQ----DNFKYVFQLKHQG-QDPL  132 (156)
Q Consensus        61 ~~~~G~L~k~~--~k~Wk~r~~vL~~~~L~~yk~~~~~-~~~~~i~L~~~~~~~~~~~----~~~~~~f~i~~~~-~~~~  132 (156)
                      ..+.|.|.+..  ++.++.|++.|=++.|.+-+..... .-+..|+|.+..+....+.    ...++.|.|.... .+.|
T Consensus       406 ll~~G~l~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~f~i~~~~~~~~~  485 (587)
T 3ky9_A          406 PKIDGELKITSVERRSKMDRYAFLLDKALLICKRRGDSYDLKDFVNLHSFQVRDDSSGDRDNKKWSHMFLLIEDQGAQGY  485 (587)
T ss_dssp             EEEEEEEEEECSSCCSCEEEEEEEETTEEEEEEEETTEEEEEEEEEGGGEEEEEC-----CCCTTCEEEEEEETTC---C
T ss_pred             eEEEeeEEEEeccCCCcceEEEEEECCEEEEEEecCCEEEeeeeechhhceeeecCCCCcccccccceeEEEEcCCCceE
Confidence            46899998764  3578889999988888877654322 2378899998888765433    2245889998654 3789


Q ss_pred             EEEcCCHHHHHHHHHHHHHHH
Q psy2209         133 VFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       133 ~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      .|+|.|.++...|+.+|+.|.
T Consensus       486 ~L~A~S~eeK~~Wi~~I~~ai  506 (587)
T 3ky9_A          486 ELFFKTRELKKKWMEQFEMAI  506 (587)
T ss_dssp             EEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEeCCHHHHHHHHHHHHHHh
Confidence            999999999999999999875

>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A

Probab=97.59  E-value=0.00055  Score=59.17  Aligned_cols=92  Identities=14%  Similarity=0.272  Sum_probs=70.8

Q ss_pred             CCcEEEEEEeccCCCceEEEEEEeCCeEEEEccCCC-----------cccceEEEccCeEEEEccCCCCceeEEEEEeCC
Q psy2209          60 GSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASED-----------IKALLSIPVLGYELEALNEQDNFKYVFQLKHQG  128 (156)
Q Consensus        60 ~~~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~-----------~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~  128 (156)
                      ..+++|.|.+.+++  +.+++.|=++.|.+-+....           -.-++.|++.+..+....+....++.|.|...+
T Consensus       443 ~Li~eG~l~~~~~k--~~r~~FLF~D~Ll~~K~~~~~~~~~g~~~~~y~~k~~i~L~~l~V~~~~d~~~~~~~F~I~~~~  520 (1049)
T 3ksy_A          443 EFIMEGTLTRVGAK--HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKD  520 (1049)
T ss_dssp             CCCCEEEEEETTCS--SCEEEEEETTEEEEEECCTTCCCCTTSCCCSCCCCCEECCSSCCCCCCCCSSSCCSEEEECCTT
T ss_pred             eEEEeceEEEEccC--ceEEEEeeCCeEEEEEecCccCCCCCCCCCceEEEEEEEcCceEEEECCCCccccceEEEEcCC
Confidence            35689999887755  77888887777777765422           123778888888776665555567899998666


Q ss_pred             CccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         129 QDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       129 ~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      +..|.|+|.|.++...|+++|+.+.
T Consensus       521 ~~~~~L~A~S~eeK~~Wi~~I~~~q  545 (1049)
T 3ksy_A          521 ENSVIFSAKSAEEKNNWMAALISLQ  545 (1049)
T ss_dssp             SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCHHHHHHHHHHHHHHH
Confidence            6789999999999999999998664

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=97.42  E-value=2.1e-05  Score=62.47  Aligned_cols=91  Identities=15%  Similarity=0.146  Sum_probs=0.0

Q ss_pred             CcEEEEEEeccCCCceEEEEEEeCCeEEEEccCCCc-------------------ccceEEEccCeEEEEccCCCCceeE
Q psy2209          61 SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDI-------------------KALLSIPVLGYELEALNEQDNFKYV  121 (156)
Q Consensus        61 ~~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~-------------------~~~~~i~L~~~~~~~~~~~~~~~~~  121 (156)
                      .+++|.|.+.  +.++.++|.|=++.|.+.+.....                   .-+..|+|.+..+....+....+++
T Consensus       253 li~eG~l~~~--~~~~~~~~fLF~d~Ll~~k~~~~~~~~~g~~~~f~~~~~~~~~v~k~~i~l~~~~v~~~~d~~~~~~~  330 (510)
T 3jzy_A          253 LLHSGKLYKT--KSNKELHGFLFNDFLLLTYMVKQFAVSSGSEKLFSSKSNAQFKMYKTPIFLNEVLVKLPTDPSSDEPV  330 (510)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             eEEeceEEEc--CCCcEEEEEcccceeEEeeecccccccCCcccccCcccccceeEEcCceehhheEEeccCCCCccccc
Confidence            3467777654  346788888877777776633221                   0134567777766655444456789


Q ss_pred             EEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         122 FQLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       122 f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |.|. ...+.|.|+|.|.++...|+++|+.|..
T Consensus       331 F~i~-~~~~~~~l~a~s~~ek~~W~~~i~~ai~  362 (510)
T 3jzy_A          331 FHIS-HIDRVYTLRTDNINERTAWVQKIKAASE  362 (510)
T ss_dssp             ---------------------------------
T ss_pred             eeee-ccceeEEeccCCHHHHHHHHHHHHHHHH
Confidence            9998 5567899999999999999999997753

>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A

Probab=97.32  E-value=0.0067  Score=45.15  Aligned_cols=92  Identities=14%  Similarity=0.082  Sum_probs=63.1

Q ss_pred             CcEEEEEEeccC----CCceEEEEEEeCCeEEEEccCCCc------ccceEEEccCeEEEEccCCCCceeEEEEEeC---
Q psy2209          61 SQHSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDI------KALLSIPVLGYELEALNEQDNFKYVFQLKHQ---  127 (156)
Q Consensus        61 ~~~~G~L~k~~~----k~Wk~r~~vL~~~~L~~yk~~~~~------~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~---  127 (156)
                      ....|.+....+    +..+.|++.|=++.|.+-+...+.      .-++.|++.+..+....+.  .++.|.|...   
T Consensus       203 li~~~~~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~y~~k~~i~l~~~~v~e~~~~--~~~~F~i~~~~~~  280 (311)
T 1nty_A          203 LILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEG--DPCKFALWVGRTP  280 (311)
T ss_dssp             EEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCTT--CTTEEEEEESSSC
T ss_pred             ceeeeeEEEEcCcccccccceeEEEeccCeEEEEEeeccCCCCceeEEeeeeeccceeeEEccCC--CCceEEEEeCCCC
Confidence            346666655432    356788888877777776543221      1266788888777654332  3568888741   


Q ss_pred             -CCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         128 -GQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       128 -~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                       ....+.|+|.|.++...|+.+|+.|..
T Consensus       281 ~~~~~~~l~a~s~~ek~~W~~~i~~~i~  308 (311)
T 1nty_A          281 TSDNKIVLKASSIENKQDWIKHIREVIQ  308 (311)
T ss_dssp             CTTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCHHHHHHHHHHHHHHHh
Confidence             346799999999999999999998864

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=97.22  E-value=0.0097  Score=49.20  Aligned_cols=92  Identities=15%  Similarity=0.266  Sum_probs=65.9

Q ss_pred             CCCcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEE
Q psy2209          59 SGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        59 ~~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      ..+.+.|++.|.++   ..|++|++.|..+.+.+....  ..+...+.+.....+..... ....+|.+...+.+.+++.
T Consensus       557 ~~~i~~G~~~k~~g~f~~~~~rR~~~l~p~r~e~~~e~--~~~~~l~~~~~v~~v~k~~i-~~~~~l~~~~k~~k~f~~~  633 (689)
T 3v5w_A          557 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEG--EAPQSLLTMEEIQSVEETQI-KERKCLLLKIRGGKQFILQ  633 (689)
T ss_dssp             SCCCEEEEEEEC-------CEEEEEEEETTEEEEECTT--SCCCEEEEGGGEEEEEEEES-SSCEEEEEEETTTEEEEEE
T ss_pred             CcceeecccccCCCcccchhhhhccccCCCcccccccC--CCCcceeeeccccccccCcC-CCCcceeeeecCCcEEEEE
Confidence            45678999999886   589999999999888877542  23345566655544433222 2346888887888999999


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q psy2209         136 ADNEQSYERWMKAMREAT  153 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~  153 (156)
                      ++|..++..|+..|+.+-
T Consensus       634 t~~~~~~~~W~~~i~~~~  651 (689)
T 3v5w_A          634 CDSDPELVQWKKELRDAY  651 (689)
T ss_dssp             CSSHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHH
Confidence            999999999999998653

>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A

Probab=97.16  E-value=0.0092  Score=45.26  Aligned_cols=91  Identities=12%  Similarity=0.122  Sum_probs=62.6

Q ss_pred             CcEEEEEEecc----C---------CCceEEEEEEeCCeEEEEccCCCc----------ccceEEEccCeEEEEccCCCC
Q psy2209          61 SQHSGWLHKKS----G---------RNWKRYWFVLKDQVMYKYKASEDI----------KALLSIPVLGYELEALNEQDN  117 (156)
Q Consensus        61 ~~~~G~L~k~~----~---------k~Wk~r~~vL~~~~L~~yk~~~~~----------~~~~~i~L~~~~~~~~~~~~~  117 (156)
                      .+++|.+.+..    +         ..++.|++.|=++.|.+-+.....          .-+..|++....+....+  +
T Consensus       210 ll~~g~l~~~~~~~~g~~~~k~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~~y~~k~~i~l~~~~v~e~~~--~  287 (353)
T 1kz7_A          210 LLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVK--G  287 (353)
T ss_dssp             EEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBT--T
T ss_pred             hheecceEEEecCccccchhhhhhccCcceeEEEEECCEEEEEEeccccccCCCCCCeEEEEEEeEcccceeeEcCC--C
Confidence            56788887521    1         136788888877777776643211          115677887776654332  2


Q ss_pred             ceeEEEEEeC-CCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         118 FKYVFQLKHQ-GQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       118 ~~~~f~i~~~-~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      .++.|.|... ....|.|+|.|.++...|+.+|+.|.
T Consensus       288 ~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  324 (353)
T 1kz7_A          288 DTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKVL  324 (353)
T ss_dssp             BTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence            3578998754 34689999999999999999999775

>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}

Probab=97.10  E-value=0.011  Score=44.89  Aligned_cols=91  Identities=16%  Similarity=0.077  Sum_probs=61.5

Q ss_pred             CcEEEEEEeccC-------CCceEEEEEEeCCeEEEEccCCCc---------ccceEEEccCeEEEEccCCCCceeEEEE
Q psy2209          61 SQHSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDI---------KALLSIPVLGYELEALNEQDNFKYVFQL  124 (156)
Q Consensus        61 ~~~~G~L~k~~~-------k~Wk~r~~vL~~~~L~~yk~~~~~---------~~~~~i~L~~~~~~~~~~~~~~~~~f~i  124 (156)
                      .+..|.+....+       +..+.+++.|=++.|.+-+.....         .-+..|+|....+....+.  .++.|.|
T Consensus       207 Ll~~g~~~v~~~~~~~~~~~~~~~r~~fLF~d~Ll~~k~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~~--~~~~F~i  284 (354)
T 2rgn_B          207 LLGQDTFWVTEPEAGGLLSSRGRERRVFLFEQIIIFSEALGGGVRGGTQPGYVYKNSIKVSCLGLEGNLQG--DPCRFAL  284 (354)
T ss_dssp             EEEEEEEEEECC-------CCCCEEEEEEESSEEEEEEECC--------CCEEEEEEEEGGGEEEEESGGG--CTTEEEE
T ss_pred             ccccceEEEEcCCcCccccCCCceEEEEEeCCcEEEEEeccCCCCCCCCCceEEcceeeccceeeeeccCC--CCceEEE
Confidence            345666554321       356788888877777776643321         1256788887776554322  3468888


Q ss_pred             EeC----CCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         125 KHQ----GQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       125 ~~~----~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ...    +...|.|+|.|.++...|+.+|+.|.
T Consensus       285 ~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai  317 (354)
T 2rgn_B          285 TSRGPEGGIQRYVLQAADPAISQAWIKHVAQIL  317 (354)
T ss_dssp             EEECSSSCEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EecCCCCCceEEEEECCCHHHHHHHHHHHHHHH
Confidence            753    24689999999999999999998875

>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1

Probab=96.39  E-value=0.083  Score=40.21  Aligned_cols=55  Identities=16%  Similarity=0.227  Sum_probs=41.0

Q ss_pred             ceEEEccCeEEEEccCCCC-ceeEEEEEeC-------CCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209          99 LLSIPVLGYELEALNEQDN-FKYVFQLKHQ-------GQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus        99 ~~~i~L~~~~~~~~~~~~~-~~~~f~i~~~-------~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      .+.|+|.+..+....+... ....|.|.+.       ..+.|.|+|.|.++...|+.+|.++.
T Consensus       303 k~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~l~A~s~~eK~~W~~~i~~~i  365 (377)
T 1foe_A          303 RHMIPTEALQVRALPSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDFLKSVHSIL  365 (377)
T ss_dssp             EEEEEGGGEEEECCCCTTTTSCCEEEEEECCBTGGGBCCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             eeeccccceEEEecCCCccchhhHHHHHhccccccCCCcceEEEEeCCHHHHHHHHHHHHHHh
Confidence            5778998888876554432 2345777531       24689999999999999999998875

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=95.71  E-value=0.068  Score=39.02  Aligned_cols=55  Identities=13%  Similarity=0.144  Sum_probs=40.8

Q ss_pred             eEEEccCeEEEEc-cCCCCceeEEEEEeCCC-ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         100 LSIPVLGYELEAL-NEQDNFKYVFQLKHQGQ-DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       100 ~~i~L~~~~~~~~-~~~~~~~~~f~i~~~~~-~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +.++|.-+.+... ...+.+++.|.|...++ .+.+|.|.+.+++..|+.+|..+..
T Consensus       206 ~~ipL~m~~~tR~~~~~d~~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i~  262 (263)
T 1z87_A          206 KHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQIG  262 (263)
T ss_dssp             EEEESSSEEEEEECCSSCSSSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHHC
T ss_pred             cccCcceeeeeeeccccCCCCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHhc
Confidence            5677766655442 22233679999997655 4679999999999999999998763

>2adz_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} SCOP: b.55.1.1

Probab=95.02  E-value=0.16  Score=34.86  Aligned_cols=55  Identities=13%  Similarity=0.147  Sum_probs=41.5

Q ss_pred             ceEEEccCeEEEE-ccCCCCceeEEEEEeCCC-ccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209          99 LLSIPVLGYELEA-LNEQDNFKYVFQLKHQGQ-DPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus        99 ~~~i~L~~~~~~~-~~~~~~~~~~f~i~~~~~-~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ...|+|.-+-+.. ....+.....|+|...++ .+.+|.|.+..++..|+.+|....
T Consensus       120 ~~~IPLkMayvtR~~~~tD~e~r~fEv~s~DG~~t~iLrc~D~a~a~~Wf~aI~sni  176 (178)
T 2adz_A          120 AKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI  176 (178)
T ss_dssp             CEEEETTTCEEEEECCSSCCSSCEEEEEETTTTEEEEECCSSHHHHHHHHHHHHHHH
T ss_pred             ceeecHHHHHHHHhccCCCCCccEEEEEcCCCCeeEEEEeCCHHHHHHHHHHHHHhc
Confidence            5678887665554 222333678999986655 477999999999999999998765

>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1

Probab=94.38  E-value=0.5  Score=30.13  Aligned_cols=92  Identities=12%  Similarity=0.116  Sum_probs=62.8

Q ss_pred             CCCcEEEEEEeccC-CCceEEEEEEeCCeEEEEccCCC-cc----cceEEEccCeEEEEccCCCCceeEEEEEeCC-Ccc
Q psy2209          59 SGSQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASED-IK----ALLSIPVLGYELEALNEQDNFKYVFQLKHQG-QDP  131 (156)
Q Consensus        59 ~~~~~~G~L~k~~~-k~Wk~r~~vL~~~~L~~yk~~~~-~~----~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~-~~~  131 (156)
                      +..+..|.+....+ +.=+.|++-|=...|.+.+.... ..    -+..|.+....+....+. +.+..|.|-..+ ...
T Consensus         8 G~Ll~q~~f~V~~~~~k~~eR~vFLFe~~ilf~K~~~~~~~~~Y~~K~~ikl~~~~lte~~~~-~d~~kFeiw~~~~~~~   86 (119)
T 1fho_A            8 GRIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTD-EDTIVLQPQEPGLPSF   86 (119)
T ss_dssp             CCSSEEEEEEECSTTCSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECTT-CCEEEEECCSTTCCCB
T ss_pred             CCccccCceEEEeCCCCcceEEEEEecCcEEEEEEecCCCCCcEEEeeEEeeceeEEEecCCC-CCCcEEEEccCCCCce
Confidence            34568888887755 34566777776666666665411 11    277888888888766441 234678886444 356


Q ss_pred             EEE--EcCCHH-HHHHHHHHHHH
Q psy2209         132 LVF--GADNEQ-SYERWMKAMRE  151 (156)
Q Consensus       132 ~~~--~a~s~~-~~~~Wi~al~~  151 (156)
                      |.+  +|.|.+ ..+.|+..|+.
T Consensus        87 ~il~~qA~s~e~~K~~Wv~~I~~  109 (119)
T 1fho_A           87 RIKPKDFETSEYVRKAWLRDIAE  109 (119)
T ss_dssp             CCCCCSSSSCSHHHHHHHHHHHT
T ss_pred             EEEeeecCCcHHHHHHHHHHHHH
Confidence            677  899999 99999999986

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=92.87  E-value=1.3  Score=37.25  Aligned_cols=85  Identities=7%  Similarity=-0.009  Sum_probs=54.1

Q ss_pred             EEEeccCCCc--eEEEEEEeC--CeEEEEccCCCcccceEEEccCeEEEEccC-C-------------------CCceeE
Q psy2209          66 WLHKKSGRNW--KRYWFVLKD--QVMYKYKASEDIKALLSIPVLGYELEALNE-Q-------------------DNFKYV  121 (156)
Q Consensus        66 ~L~k~~~k~W--k~r~~vL~~--~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~-~-------------------~~~~~~  121 (156)
                      .|.|-..+.|  +.++|.|..  ..|+|... .  .....|+|....-+.... .                   .....+
T Consensus        22 ~~~K~~~~~~~~k~~~frLd~d~~~l~W~~~-~--k~~~~l~I~~IkeIR~G~~s~~pk~~~~~e~~~~~~~~~~~e~~~   98 (799)
T 2zkm_X           22 RFIKWDDETTVASPVILRVDPKGYYLYWTYQ-S--KEMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPDNSFLLKT   98 (799)
T ss_dssp             EEEEECTTTCCEEEEEEEECTTSCEEEEEET-T--SCEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSSTTCCGGGTE
T ss_pred             EEEEEcCCCcceeEEEEEEcCCCCEEEEccC-C--CcCceEeeeeeHHhhcCCCCCCCchHHHHHHhcccCcccccccce
Confidence            4455555666  567788853  44555543 2  124678877665554211 0                   012368


Q ss_pred             EEEEeCCCc----cEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         122 FQLKHQGQD----PLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       122 f~i~~~~~~----~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      |.|.+....    .+.|.|.+.++++.|+..|+...
T Consensus        99 fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L~  134 (799)
T 2zkm_X           99 LTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLALV  134 (799)
T ss_dssp             EEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHHH
Confidence            999876543    47999999999999999998643

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=90.28  E-value=4.6  Score=34.14  Aligned_cols=86  Identities=7%  Similarity=-0.050  Sum_probs=53.6

Q ss_pred             EEEeccCCCc--eEEEEEEeC--CeEEEEccCCCcccceEEEccCeEEEEccCCC--------------------C-cee
Q psy2209          66 WLHKKSGRNW--KRYWFVLKD--QVMYKYKASEDIKALLSIPVLGYELEALNEQD--------------------N-FKY  120 (156)
Q Consensus        66 ~L~k~~~k~W--k~r~~vL~~--~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~--------------------~-~~~  120 (156)
                      .|.|-..+.+  +.+.|.|..  ..|+|....++.  ...++|....-+......                    . ...
T Consensus        27 ~~~K~~~~s~~~~~~~f~lD~d~~~L~W~~~~k~~--~~~l~I~~I~eVR~G~~t~~pk~~klr~~~~~~g~~~~~~e~r  104 (816)
T 3qr0_A           27 KFLKWEEGSSGFIEILLRVDPKGYFLYWKIEGKED--TQLLDLAYVRDIRCAKYAKPPKDKKIKEAGTNFGSSNIPLQDK  104 (816)
T ss_dssp             EEEEECTTCCCCEEEEEEECTTSCEEEECCTTCSS--CEEEEGGGEEEEEEGGGSCCCCSHHHHHHHHHSSCTTSCHHHH
T ss_pred             eEEEECCCCCcceeEEEEEcCCCCEEEEeCCCCCc--CcEEEeeeeeeeecCCcCCCCccHHHHHHHHhcCCCccccccc
Confidence            5556555554  568888853  444444322222  367888766555432210                    0 236


Q ss_pred             EEEEEeCCC----ccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         121 VFQLKHQGQ----DPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       121 ~f~i~~~~~----~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      +|.|.+...    +.+.|.|.+.++++.|+..|+..+
T Consensus       105 ~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~  141 (816)
T 3qr0_A          105 CVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYA  141 (816)
T ss_dssp             EEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHH
Confidence            899986544    233899999999999999998643

>3a98_B Engulfment and cell motility protein 1; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A

Probab=89.46  E-value=4  Score=28.43  Aligned_cols=54  Identities=15%  Similarity=0.228  Sum_probs=38.5

Q ss_pred             ceEEEccCeEEEEcc---CCC-----------CceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHH
Q psy2209          99 LLSIPVLGYELEALN---EQD-----------NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus        99 ~~~i~L~~~~~~~~~---~~~-----------~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      ...|+|.....+...   +..           -....|.|....+..+-|.|.|..+...|++.|+.-
T Consensus        81 ~~kI~ls~Is~V~sg~~~p~~~~~~~~k~~~~~~~laFSii~~~~~~L~fvA~s~~~~~~W~DGL~~L  148 (203)
T 3a98_B           81 QDKLPVADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSILYDSNCQLNFIAPDKHEYCIWTDGLNAL  148 (203)
T ss_dssp             CCEEEGGGEEEEEEGGGSTTC--------CCTTGGGEEEEEETTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred             ccceeHhhhhHhhcCCCCccccccccccccCcccceEEEEecCCCceEEEecCCHHHHHHHHHHHHHH
Confidence            567888776555421   110           012588888766678999999999999999999753

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=85.32  E-value=9.4  Score=32.61  Aligned_cols=85  Identities=7%  Similarity=-0.008  Sum_probs=51.3

Q ss_pred             EEEeccCC-Cc-eEEEEEEeC--CeEEEEccCCCcccceEEEccCeEEEEccCC--------------------CCceeE
Q psy2209          66 WLHKKSGR-NW-KRYWFVLKD--QVMYKYKASEDIKALLSIPVLGYELEALNEQ--------------------DNFKYV  121 (156)
Q Consensus        66 ~L~k~~~k-~W-k~r~~vL~~--~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~--------------------~~~~~~  121 (156)
                      .+.|-.++ .+ +.++|.|..  ..|+|.. ++  .....++|....-+.....                    .....+
T Consensus        26 ~f~K~~~~~~~~k~~~frLD~d~~~L~W~~-~~--ke~~~l~Is~IkeIR~G~~a~~pKd~klr~~~~~~~~~~~~e~r~  102 (885)
T 3ohm_B           26 KFIKWDEETSSRNLVTLRVDPNGFFLYWTG-PN--MEVDTLDISSIRDTRTGRYARLPKDPKIREVLGFGGPDARLEEKL  102 (885)
T ss_dssp             EEEEECTTCCSCCEEEEEECTTSCEEEEEC-GG--GCEEEEEGGGEEEEEETTTSCCCCSHHHHHCC---------CTTE
T ss_pred             eEEEECCCCCCcEEEEEEECCCCCEEEEeC-CC--CCCceEeeehhhhhhcCcCCCCCccHHHHHHhccCcccCcccccE
Confidence            44554444 34 566777753  4444443 22  2234677766555443221                    112368


Q ss_pred             EEEEeCCCc----cEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         122 FQLKHQGQD----PLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       122 f~i~~~~~~----~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      |.|.+....    .+.|.|.+.++++.|+..|+..+
T Consensus       103 fTIvyg~d~~n~~~LdLVA~s~e~a~~W~~gL~~L~  138 (885)
T 3ohm_B          103 MTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFKLA  138 (885)
T ss_dssp             EEEEECSSGGGCEEEEEEESSSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCccceEEEEEeCChHHHHHHHHHHHHHH
Confidence            999876543    48999999999999999998643

>3hie_A Protein PSL1, exocyst complex component SEC3; PH domain, dimer, domain swapping, phosphate-binding, coiled coil, exocytosis; 2.00A {Saccharomyces cerevisiae}

Probab=82.70  E-value=8.9  Score=25.92  Aligned_cols=74  Identities=11%  Similarity=0.101  Sum_probs=49.1

Q ss_pred             eEEEEEEe-----CCeEEEEccCCCccc----ceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCCHHHHHHHH
Q psy2209          76 KRYWFVLK-----DQVMYKYKASEDIKA----LLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWM  146 (156)
Q Consensus        76 k~r~~vL~-----~~~L~~yk~~~~~~~----~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi  146 (156)
                      |.|+.+|.     .+.++.|+.......    ...=+|.....+.....  ....|.|..  ++.|+.+|++..|...+|
T Consensus        65 K~R~L~lav~~~~sgrV~lhK~K~N~ngsfsiGkTW~L~ELk~Ie~~~~--~~~gF~ltl--~K~Y~W~a~s~~Er~~FI  140 (171)
T 3hie_A           65 KKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKDLE--ISEGFILTM--SKKYYWETNSAKERTVFI  140 (171)
T ss_dssp             EEEEEEEEECTTCTTCEEEEEEEECTTSCEEEEEEEEGGGCCEEEECSS--CTTEEEEES--SSEEEEECSSHHHHHHHH
T ss_pred             cceEEEEEEecCCCceEEEEEEEECCCCcEEeeeeeecccceeeeccCC--CCCcEEEEe--CCeEEEecCCHHHHHHHH
Confidence            67777772     566788876543321    23335666655554222  245888863  478999999999999999


Q ss_pred             HHHHHHH
Q psy2209         147 KAMREAT  153 (156)
Q Consensus       147 ~al~~a~  153 (156)
                      ..|-+..
T Consensus       141 ~sL~K~y  147 (171)
T 3hie_A          141 KSLITLY  147 (171)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9986643

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae}

Probab=81.08  E-value=13  Score=27.49  Aligned_cols=75  Identities=12%  Similarity=0.101  Sum_probs=49.3

Q ss_pred             CceEEEEEEe-----CCeEEEEccCCCccc----ceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCCHHHHHH
Q psy2209          74 NWKRYWFVLK-----DQVMYKYKASEDIKA----LLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYER  144 (156)
Q Consensus        74 ~Wk~r~~vL~-----~~~L~~yk~~~~~~~----~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~~~~~  144 (156)
                      .=|.|+.+|.     .+.+++|+.......    ...-+|.....+...  ...+..|.|..  ++.||.+|.+..|...
T Consensus       133 kKK~R~LcLaV~~d~sGRV~LhKaKeN~ngsFsIGKTW~L~ELk~Id~~--~~~~~gF~LTl--~K~YyW~A~s~kER~~  208 (320)
T 3a58_A          133 NKKKRLLILSAKPNNAKLIQIHKARENSDGSFQIGRTWQLTELVRVEKD--LEISEGFILTM--SKKYYWETNSAKERTV  208 (320)
T ss_dssp             GEEEEEEEEEECSSCTTCEEEEEEEECGGGCEEEEEEEEGGGCCEEEEC--SSCTTEEEEES--SSEEEEEESSHHHHHH
T ss_pred             ccCceEEEEEEecCCCceEEEEEEEecCCCceEecceechhhhhhhhcc--cCCCCceEEEe--CCceEEecCCHHHHHH
Confidence            4578888873     466888876433321    233355555544410  11335888863  6789999999999999


Q ss_pred             HHHHHHHH
Q psy2209         145 WMKAMREA  152 (156)
Q Consensus       145 Wi~al~~a  152 (156)
                      +|..|-+.
T Consensus       209 FI~sLvKi  216 (320)
T 3a58_A          209 FIKSLITL  216 (320)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1droa_	122	b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila	2e-15
d1upqa_	107	b.55.1.1 (A:) Phosphoinositol 3-phosphate binding	5e-15
d1u5ea1	209	b.55.1.1 (A:14-222) Src-associated adaptor protein	2e-14
d1plsa_	113	b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [Ta	3e-14
d1v88a_	130	b.55.1.1 (A:) Oxysterol binding protein-related pr	3e-14
d1v89a_	118	b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KI	4e-14
d2cofa1	95	b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens)	6e-14
d1wgqa_	109	b.55.1.1 (A:) FYVE, RhoGEF and PH domain containin	9e-14
d1eaza_	103	b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId:	5e-13
d1faoa_	100	b.55.1.1 (A:) Dual adaptor of phosphotyrosine and	6e-13
d1x1ga1	116	b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapie	1e-12
d1fgya_	127	b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 1	4e-12
d2coca1	99	b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain cont	1e-11
d2i5fa1	104	b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapie	1e-11
d1v5ua_	117	b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (M	2e-11
d1v5pa_	126	b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId:	5e-11
d1u5fa1	111	b.55.1.1 (A:109-219) Src-associated adaptor protei	8e-11
d2coda1	102	b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo	1e-10
d1u5da1	106	b.55.1.1 (A:108-213) Src kinase-associated phospho	2e-10
d1v5ma_	136	b.55.1.1 (A:) SH2 and PH domain-containing adapter	2e-10
d2elba2	101	b.55.1.1 (A:274-374) DCC-interacting protein 13-al	4e-10
d1wjma_	123	b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens),	4e-10
d2dyna_	111	b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId	4e-10
d1wi1a_	126	b.55.1.1 (A:) Calcium-dependent activator protein	1e-09
d1x1fa1	136	b.55.1.1 (A:8-143) Signal-transducing adaptor prot	1e-09
d1wg7a_	150	b.55.1.1 (A:) Dedicator of cytokinesis protein 9,	2e-09
d2j59m1	133	b.55.1.1 (M:931-1063) Rho GTPase-activating protei	2e-08
d2fjla1	101	b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phosph	2e-08
d1btka_	169	b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Hom	3e-08
d1btna_	106	b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus),	7e-08
d1unqa_	118	b.55.1.1 (A:) Rac-alpha serine/threonine kinase {H	9e-08
d1omwa2	119	b.55.1.1 (A:550-668) G-protein coupled receptor ki	1e-07
d1qqga1	103	b.55.1.2 (A:12-114) Insulin receptor substrate 1,	5e-07
d1w1ha_	147	b.55.1.1 (A:) 3-phosphoinositide dependent protein	6e-07
d2coaa1	112	b.55.1.1 (A:8-119) Protein kinase c, d2 type {Huma	2e-05
d1zc3b1	109	b.55.1.1 (B:171-279) Exocyst complex protein EXO84	2e-04
d1dbha2	133	b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {H	0.002

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 122

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 66.1 bits (160), Expect = 2e-15
 Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 18/117 (15%)

Query: 55  TANDSGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPV 104
           +   +G  H G++ +K          S R+W + +   K   +  YK  +  K+   +  
Sbjct: 2   SGTGAGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTF 61

Query: 105 LGY--------ELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
            G          +E  ++    K+V ++K       +  A ++    +W+ +++  +
Sbjct: 62  RGEPSYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQS 118

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (157), Expect = 5e-15
 Identities = 28/96 (29%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 63  HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYE--LEALNEQDN 117
             GWLHK+     R WKR WFVL    ++ YK S +   L S+ +  Y    +       
Sbjct: 11  IRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRG 70

Query: 118 FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
            ++ F  +H G    V  AD  +    W++A+  A+
Sbjct: 71  RRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS 106

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 209

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.7 bits (159), Expect = 2e-14
 Identities = 24/141 (17%), Positives = 48/141 (34%), Gaps = 10/141 (7%)

Query: 22  DIIRSNFKEMGTAGRRKPSKKYRKYVPQRLIEVTANDSGS-QHSGWLHKKS------GRN 74
           D        +  A  R            +   + A D      +G+L K+       G  
Sbjct: 64  DPFAGPADTISLASERYDKDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFE 123

Query: 75  WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL---EALNEQDNFKYVFQLKHQGQDP 131
           W++ W  L   V Y Y + +D +      + GY++     L +       F++    +  
Sbjct: 124 WQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRI 183

Query: 132 LVFGADNEQSYERWMKAMREA 152
             F A + +  E W++ ++  
Sbjct: 184 YQFTAASPKDAEEWVQQLKFI 204

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 3e-14
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD-NFK 119
             G+L KK      WK  W VL +  +  YK   D      IP+ G  L +  +      
Sbjct: 7   REGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRM 66

Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           +VF++    Q    F A   +  + W++ + +A
Sbjct: 67  FVFKITTTKQQDHFFQAAFLEERDAWVRDINKA 99

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (152), Expect = 3e-14
 Identities = 23/122 (18%), Positives = 47/122 (38%), Gaps = 25/122 (20%)

Query: 55  TANDSGSQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN 113
           ++  SG   + WL  +   ++W + W VLK  V+  YK  ++ + + ++ +   E+    
Sbjct: 2   SSGSSGIVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERP 61

Query: 114 EQDNFKYVFQLKHQGQD-----------------------PLVFGADNEQSYERWMKAMR 150
            + +  + F+L H  +                         L+  A +E     WM A+ 
Sbjct: 62  SKKD-GFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALE 120

Query: 151 EA 152
            A
Sbjct: 121 LA 122

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (151), Expect = 4e-14
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 11/110 (10%)

Query: 55  TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL 112
           ++  SG    GWL K+    +NW++ +FVL+ Q +Y YK  ED K    + + G  ++ +
Sbjct: 2   SSGSSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEI 61

Query: 113 --NEQDNFKYVFQL-------KHQGQDPLVFGADNEQSYERWMKAMREAT 153
             N ++  K+VF++          GQD  V  A ++   E W+K +R   
Sbjct: 62  ATNPEEAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.5 bits (148), Expect = 6e-14
 Identities = 15/92 (16%), Positives = 35/92 (38%)

Query: 62  QHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYV 121
           + S +L+      WK  W  ++D  ++ Y+     K       L       +   +  Y 
Sbjct: 2   ETSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDHLYS 61

Query: 122 FQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
           F++ H+G++     A + +    W+  +   +
Sbjct: 62  FRILHKGEELAKLEAKSSEEMGHWLGLLLSES 93

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (148), Expect = 9e-14
 Identities = 42/101 (41%), Positives = 66/101 (65%), Gaps = 2/101 (1%)

Query: 55  TANDSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL 112
           ++  SGS  SG+L++  G  + WK  WFV+K++V+Y Y ASED+ AL S P+LG+ +  +
Sbjct: 2   SSGSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLV 61

Query: 113 NEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
            ++++   VFQL H+G    VF AD+  S +RW+ A +E T
Sbjct: 62  KDENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGT 102

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 5e-13
 Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 59  SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 116
           S    +G+  K+    +NWKR +F L +  +  +K+  + + L  IP+         +Q 
Sbjct: 1   SAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQS 60

Query: 117 NFK---YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
           +      +F++    +      AD+ +    W+KA+  A  
Sbjct: 61  DIMMRDNLFEIVTTSRT-FYVQADSPEEMHSWIKAVSGAIV 100

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (142), Expect = 6e-13
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 59  SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 116
           S     G+L K+ G  + WK  WF L    +  +K     + +  + +        +   
Sbjct: 2   SLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQ 61

Query: 117 NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
                F L    +      A      + W+K +R  
Sbjct: 62  ERVNCFCLVFPFRT-FYLCAKTGVEADEWIKILRWK 96

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 1e-12
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 13/104 (12%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQ---VMYKYKASEDIKALLSIPVLGYELEALNE--- 114
             G+L K+    +NWK   FVL+     + Y   + E+ + +    + G  + AL +   
Sbjct: 13  KQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGV 72

Query: 115 -----QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
                 +    +F++  +        A ++     W++A+++ T
Sbjct: 73  PTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKLT 116

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.6 bits (138), Expect = 4e-12
 Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 24/114 (21%)

Query: 64  SGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYV 121
            GWL K  G  + WKR WF+L D  +Y ++ + D +    IP+    +  + +       
Sbjct: 8   EGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRK-PNC 66

Query: 122 FQLKHQGQDP---------------------LVFGADNEQSYERWMKAMREATT 154
           F+L +                              A + +  E WMK+++ + +
Sbjct: 67  FELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS 120

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-11
 Identities = 20/98 (20%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 61  SQHSGWLHKK-SGRNWKRYWFVLKD---QVMYKYKASEDIKALLSIPVLGYEL--EALNE 114
           S   G L    SG  W   W  +     QV++    S+D +   +IP+   +L      E
Sbjct: 1   SLLCGPLRLSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEE 60

Query: 115 QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
           + +  +V++L+   +      A + +  ++W++ +  A
Sbjct: 61  RLDSGHVWKLQW-AKQSWYLSASSAELQQQWLETLSTA 97

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 1e-11
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 9/100 (9%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQD-- 116
             G L K+    +NWK   F+L++    ++ Y  +     L +I + G  + ++      
Sbjct: 4   KQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNG 63

Query: 117 ---NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
                + +F++    +      A   +    W+KA++ A+
Sbjct: 64  RKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMAS 103

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 117

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.4 bits (132), Expect = 2e-11
 Identities = 22/110 (20%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 55  TANDSGSQHSGWLHKKSG--RNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELE 110
           ++  SG  + G L+KK    + WK  WFVL      +  Y    D +    I +   E  
Sbjct: 2   SSGSSGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAV 61

Query: 111 ALNEQDNFKY------VFQLKHQGQDPLVFGADNEQSYERWMKAMREATT 154
           A                F      +    F A +  S ++W+  ++   +
Sbjct: 62  APGTPTIGAPKTVDEKAFFDVKTTRRVYNFCAQDVPSAQQWVDRIQSCLS 111

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.6 bits (130), Expect = 5e-11
 Identities = 15/108 (13%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 58  DSGSQHSGWLHKKSG---RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEAL 112
           D  ++  G+L  +       + R +F+L  Q   +  Y  +    A+ +  V   +L  +
Sbjct: 12  DRQNRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYI 71

Query: 113 NEQD-------NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
           ++                + +         A++++  + W++A+ +A+
Sbjct: 72  SKVSIATPKQKPKTPFCFVINALSQRYFLQANDQKDLKDWVEALNQAS 119

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (128), Expect = 8e-11
 Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 9/99 (9%)

Query: 63  HSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE-- 114
            +G+L K+          W++ W  L   V Y Y + +D +      + GY++   N   
Sbjct: 11  KAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLR 70

Query: 115 -QDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
                   F++    +    F A + +  E W++ ++  
Sbjct: 71  KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFI 109

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 1e-10
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 8/93 (8%)

Query: 63  HSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK 119
            SGWL K S    R +++ W       +  Y   +++ +   IP+       +   + F+
Sbjct: 3   KSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNKFE 62

Query: 120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
                    Q   VF  + E+    W+  +  A
Sbjct: 63  V-----VTTQRTFVFRVEKEEERNDWISILLNA 90

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 2e-10
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 63  HSGWLHKKS------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQD 116
             G+L KKS      G  W++ W V+   + Y Y   +  +   +  + GY +       
Sbjct: 3   KQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLR 62

Query: 117 NFK---YVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
                   F+L  Q +    F A +      W+  +   
Sbjct: 63  RDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFL 101

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.3 bits (127), Expect = 2e-10
 Identities = 13/110 (11%), Positives = 28/110 (25%), Gaps = 19/110 (17%)

Query: 62  QHSGWLHKKSG----------RNWKRYWFVLKDQVM------YKYKASEDIKALLSIPVL 105
           Q  G L                 W++   +L+  V         +   +  +  +SIP+ 
Sbjct: 19  QREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLS 78

Query: 106 GYELEALNEQDNF---KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
                              F LK +     +    +      W+  ++  
Sbjct: 79  AIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADIQGC 128

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 4e-10
 Identities = 12/102 (11%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 57  NDSGSQHSGWLHKKS-----GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEA 111
           N + ++ +G+L+ ++        W R ++  +   +      +     L++ +    + A
Sbjct: 1   NRNLTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGDVA-GGLAMDIDNCSVMA 59

Query: 112 LNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
           ++ +D           G+   +  A++++ +E W+  +   +
Sbjct: 60  VDCEDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNIS 101

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 4e-10
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 16/115 (13%)

Query: 55  TANDSGSQHSGWLHKK----------SGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPV 104
           ++  SG Q  G L +K          + R+W+  + VL+   +  YK ++   A +    
Sbjct: 2   SSGSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHG 61

Query: 105 LGY------ELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
                    +     +    K+VF+L  Q     +F A +E     W++ +  A 
Sbjct: 62  EVPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 4e-10
 Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 12/103 (11%)

Query: 63  HSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF 118
             GWL   +        K YWFVL  + +  YK  E+ +    + V   +L  + +    
Sbjct: 5   RKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMS 64

Query: 119 K--------YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
                       +  ++    L    + ++  + W  +   A 
Sbjct: 65  SKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG 107

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 1e-09
 Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 9/111 (8%)

Query: 55  TANDSGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASED------IKALLSIPVL 105
           ++  SG +HSG+L        + WK+ +FVL     Y +            + LL +   
Sbjct: 2   SSGSSGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGY 61

Query: 106 GYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
             +             F    +  D ++F +D+EQ    W++AM  AT  S
Sbjct: 62  TVDYTDPQPGLEGGRAFFNAVKEGDTVIFASDDEQDRILWVQAMYRATGQS 112

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 136

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 1e-09
 Identities = 16/96 (16%), Positives = 33/96 (34%), Gaps = 2/96 (2%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKY 120
             G+L  K    R ++ YW  L+   ++ Y   + I  +  + ++               
Sbjct: 13  FEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNC 72

Query: 121 VFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
                   ++ +    +N +S E W   +   T LS
Sbjct: 73  AKFTLVLPKEEVQLKTENTESGEEWRGFILTVTELS 108

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 150

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 2e-09
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 13/108 (12%)

Query: 59  SGSQHSGWLHKKSG--------RNWKRYWFVLKD-----QVMYKYKASEDIKALLSIPVL 105
            G    GWL+K +         R++KR +F L         +  YK  +  K       L
Sbjct: 16  GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFL 75

Query: 106 GYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
              +  +      ++ F+LK Q +   +  AD+E   E W+  + +  
Sbjct: 76  DSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKIL 123

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 2e-08
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 17/112 (15%)

Query: 61  SQHSGWLHKKSG------------RNWKRYWFVLKDQVMYKYKA----SEDIKALLSIPV 104
           +   GWLH +              R WK+ + VL+   +Y YK     +   +    I V
Sbjct: 1   AAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISV 60

Query: 105 LGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
               ++    +   K VF+L     +  +F A++      W+K ++E++ L+
Sbjct: 61  NACLIDISYSETKRKNVFRLTTSDCE-CLFQAEDRDDMLAWIKTIQESSNLN 111

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 101

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.3 bits (111), Expect = 2e-08
 Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 64  SGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFK-- 119
           +G L+ +      W  ++FVL    +Y  + +        + V   ++    E  N +  
Sbjct: 4   NGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIRPEGKNNRLF 63

Query: 120 -YVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
            +   +    Q  L   AD+++  + W+K +RE  
Sbjct: 64  VFSISMPSVAQWSLDVAADSQEELQDWVKKIREVA 98

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 169

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 3e-08
 Identities = 21/131 (16%), Positives = 41/131 (31%), Gaps = 38/131 (29%)

Query: 59  SGSQHSGWLHKKS-------GRNWKRYWFVLKDQVMYKYKASED----IKALLSIPVLGY 107
           +         K+S         N+K+  F+L    +  Y+   +         SI V   
Sbjct: 1   AAVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKI 60

Query: 108 --------------------------ELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQS 141
                                     E+E ++  + F Y FQ+ +    PL   +  E+ 
Sbjct: 61  TCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDEG-PLYVFSPTEEL 119

Query: 142 YERWMKAMREA 152
            +RW+  ++  
Sbjct: 120 RKRWIHQLKNV 130

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]} Length = 106

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 7e-08
 Identities = 21/104 (20%), Positives = 46/104 (44%), Gaps = 16/104 (15%)

Query: 65  GWLHKK----------SGRNWKRYWFVLKDQVMYKYKASED------IKALLSIPVLGYE 108
           G+L++K          S R+W   + V+ +Q M  YK ++         + + + +    
Sbjct: 3   GFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAI 62

Query: 109 LEALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
            E   +    K+VF+L+    +  +F A +++    W++A+  A
Sbjct: 63  CEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 9e-08
 Identities = 18/99 (18%), Positives = 35/99 (35%), Gaps = 9/99 (9%)

Query: 63  HSGWLHKKSG--RNWKRYWFVLKDQV-MYKYKASEDIKALLSIPVLGYE------LEALN 113
             GWLHK+    + W+  +F+LK+      YK           P+  +       ++   
Sbjct: 9   KEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTER 68

Query: 114 EQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
            + N   +  L+        F  +  +  E W  A++  
Sbjct: 69  PRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTV 107

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]} Length = 119

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.8 bits (107), Expect = 1e-07
 Identities = 20/104 (19%), Positives = 35/104 (33%), Gaps = 6/104 (5%)

Query: 53  EVTANDSGSQHSGWLHKKSGRN---WKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYEL 109
           E  A        G++ K        W+R +F L    +      E  +   S+  +    
Sbjct: 2   EDYALGKDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEAPQ---SLLTMEEIQ 58

Query: 110 EALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT 153
                Q   +    LK +G    V   D++    +W K +R+A 
Sbjct: 59  SVEETQIKERKCLLLKIRGGKQFVLQCDSDPELVQWKKELRDAY 102

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 5e-07
 Identities = 16/101 (15%), Positives = 33/101 (32%), Gaps = 15/101 (14%)

Query: 63  HSGWLHKKSGRNWKRYWFVLKDQVM------------YKYKASEDIKALLSIPVLGYELE 110
             G+L K   ++  + +FVL+                 K    +      SIP+      
Sbjct: 4   KVGYLRKP--KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNI 61

Query: 111 ALNEQDNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMRE 151
                   K++    +   +     AD+E   + W +A+ +
Sbjct: 62  NKRADSKNKHLVA-LYTRDEHFAIAADSEAEQDSWYQALLQ 101

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 147

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 6e-07
 Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 6/97 (6%)

Query: 56  ANDSGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ 115
             ++     G + K+ G   +R   +L +     Y    +      IP       +   +
Sbjct: 43  VENNLILKMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVNKVLKGEIPW------SQELR 96

Query: 116 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
              K          +   +  D   +  +W + ++E 
Sbjct: 97  PEAKNFKTFFVHTPNRTYYLMDPSGNAHKWCRKIQEV 133

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]} Length = 112

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-05
 Identities = 16/107 (14%), Positives = 38/107 (35%), Gaps = 18/107 (16%)

Query: 64  SGWLHKKSGRN--WKRYWFVLKDQVMYKYKASEDIKALLSIPV------LGYELEALNEQ 115
            GW+   S ++   KR+++ L  + +  ++ +   +    IP+         +  +L   
Sbjct: 4   EGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPP 63

Query: 116 DNFKYVFQLKH----------QGQDPLVFGADNEQSYERWMKAMREA 152
               + F++             G  P        ++   W  A+R+A
Sbjct: 64  GTNPHCFEIVTANATYFVGEMPGGTPGGPSGQGAEAARGWETAIRQA 110

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 109

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 63  HSGWLHKKSGRNWK----RYWFVLKDQVMYKYKASEDIKALL---SIPVLGYELEALNEQ 115
           ++G L +    +       + F++ D ++      +           P+    +  + + 
Sbjct: 6   YNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDN 65

Query: 116 DNFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREA 152
              K +F+L     +  +F A+N +    W++ + E 
Sbjct: 66  PPMKDMFKLLMF-PESRIFQAENAKIKREWLEVLEET 101

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (78), Expect = 0.002
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 13/105 (12%)

Query: 63  HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNF---- 118
             G L +   +        L D +M   K++     L       Y L+            
Sbjct: 29  MEGTLTRVGAK--HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQIND 86

Query: 119 -------KYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTLS 156
                  K+ F++  + ++ ++F A + +    WM A+      S
Sbjct: 87  KDDTNEYKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQYRS 131

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1faoa_	100	Dual adaptor of phosphotyrosine and 3-phosphoinosi	99.91
d1wgqa_	109	FYVE, RhoGEF and PH domain containing protein 6, F	99.9
d2fjla1	101	Phosphoinositide phospholipase C, PLC-gamma-1 {Rat	99.89
d2coaa1	112	Protein kinase c, d2 type {Human (Homo sapiens) [T	99.89
d2dyna_	111	Dynamin {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1upqa_	107	Phosphoinositol 3-phosphate binding protein-1, PEP	99.88
d1v88a_	130	Oxysterol binding protein-related protein 8 (ORP-8	99.88
d2coca1	99	FYVE, RhoGEF and PH domain containing protein 3, F	99.88
d2cofa1	95	KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1plsa_	113	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1u5fa1	111	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.87
d1v89a_	118	Rho-GTPase-activating protein 25 (KIAA0053) {Human	99.87
d1u5da1	106	Src kinase-associated phosphoprotein SKAP55 (SCAP1	99.86
d1x1fa1	136	Signal-transducing adaptor protein 1, STAP-1 {Huma	99.86
d2coda1	102	Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 96	99.86
d1fgya_	127	Grp1 {Mouse (Mus musculus) [TaxId: 10090]}	99.85
d1eaza_	103	Tapp1 {Human (Homo sapiens) [TaxId: 9606]}	99.85
d1u5ea1	209	Src-associated adaptor protein Skap2 {Mouse (Mus m	99.85
d2j59m1	133	Rho GTPase-activating protein 21 {Human (Homo sapi	99.84
d1qqga1	103	Insulin receptor substrate 1, IRS-1 {Human (Homo s	99.84
d1wg7a_	150	Dedicator of cytokinesis protein 9, DOCK9 {Human (	99.84
d1v5ua_	117	SET binding factor 1, Sbf1 {Mouse (Mus musculus) [	99.84
d2i5fa1	104	Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1btna_	106	beta-spectrin {Mouse (Mus musculus), brain [TaxId:	99.83
d1wi1a_	126	Calcium-dependent activator protein for secretion,	99.83
d1btka_	169	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.83
d1w1ha_	147	3-phosphoinositide dependent protein kinase-1 {Hum	99.82
d1wjma_	123	beta-spectrin {Human (Homo sapiens), brain 2 isofo	99.82
d2elba2	101	DCC-interacting protein 13-alpha, APPL1 {Human (Ho	99.82
d1omwa2	119	G-protein coupled receptor kinase 2 (beta-adrenerg	99.82
d1v5pa_	126	Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}	99.81
d1droa_	122	beta-spectrin {Fruit fly (Drosophila melanogaster)	99.8
d1v5ma_	136	SH2 and PH domain-containing adapter protein APS {	99.8
d1x1ga1	116	Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1unqa_	118	Rac-alpha serine/threonine kinase {Human (Homo sap	99.77
d1v61a_	132	Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [	99.37
d2dfka2	162	Rho guanine nucleotide exchange factor 9, Collybis	99.02
d1zc3b1	109	Exocyst complex protein EXO84 {Rat (Rattus norvegi	99.02
d1maia_	119	Phospholipase C delta-1 {Rat (Rattus norvegicus) [	98.97
d1dbha2	133	Son of sevenless-1 (sos-1) {Human (Homo sapiens) [	98.96
d1ntya2	121	Triple functional domain protein TRIO {Human (Homo	98.33
d1ki1b2	142	GEF of intersectin {Human (Homo sapiens) [TaxId: 9	98.26
d1xcga2	140	Rho guanine nucleotide exchange factor 11, PDZ-Rho	98.21
d1txda2	114	Rho guanine nucleotide exchange factor 12 {Human (	98.19
d1kz7a2	147	Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId	97.88
d1fhoa_	119	UNC-89 {Nematode (Caenorhabditis elegans) [TaxId:	97.87
d2adza1	105	Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 1	97.68
d2zkmx3	131	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	95.29
d1foea2	162	GEF of TIAM1 (T-Lymphoma invasion and metastasis i	94.06

>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dual adaptor of phosphotyrosine and 3-phosphoinositides DAPP1/PHISH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.2e-24  Score=134.72  Aligned_cols=93  Identities=17%  Similarity=0.316  Sum_probs=82.1

Q ss_pred             CCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcC
Q psy2209          60 GSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGAD  137 (156)
Q Consensus        60 ~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~  137 (156)
                      ...++|||.|+++  +.|++|||||.++.|+||+++.+..+.+.|+|.++.++.......++++|.|. +..++|+|+|+
T Consensus         3 ~~~KeG~L~K~~~~~k~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~-~~~r~~~l~a~   81 (100)
T d1faoa_           3 LGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLV-FPFRTFYLCAK   81 (100)
T ss_dssp             TTCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSSSSSSEEEEE-ETTEEEEEECS
T ss_pred             CccEEEEEEEeCCCCCCceEEEEEEECCEEEEEeccCCccCceEEechheEEEEeccccccccccccc-cCCeEEEEEeC
Confidence            3569999999986  58999999999999999999999999999999998876655555678999998 55688999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy2209         138 NEQSYERWMKAMREAT  153 (156)
Q Consensus       138 s~~~~~~Wi~al~~a~  153 (156)
                      |.++++.||.+|+.+.
T Consensus        82 s~~~~~~Wi~ai~~~i   97 (100)
T d1faoa_          82 TGVEADEWIKILRWKL   97 (100)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHH
Confidence            9999999999999875

>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 6, Fgd6 (KIAA1362)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=6e-23  Score=131.02  Aligned_cols=97  Identities=43%  Similarity=0.812  Sum_probs=87.7

Q ss_pred             CCCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEE
Q psy2209          58 DSGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      ...+.++|||+++++  +.|++|||+|.++.|+||+++.+..+.+.|+|.++.+....+...++++|.|..++.+.|+|+
T Consensus         5 ~~~~~~~G~L~k~~~~~~~W~kr~~vL~~~~L~~~k~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~~~~~f~   84 (109)
T d1wgqa_           5 SSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFK   84 (109)
T ss_dssp             CCSCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTCSSCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEEE
T ss_pred             CCCCcEEEEEEEECCCCCCceEEEEEEeCCEEEEeccccccccccccccceeeeeecccccccceeeeeecccceEEEEE
Confidence            345789999999876  489999999999999999999888899999999999888777777889999998888889999


Q ss_pred             cCCHHHHHHHHHHHHHHHh
Q psy2209         136 ADNEQSYERWMKAMREATT  154 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~~  154 (156)
                      |++++++.+||.+|+.|+.
T Consensus        85 a~s~~~~~~Wi~ai~~a~~  103 (109)
T d1wgqa_          85 ADDAHSTQRWIDAFQEGTV  103 (109)
T ss_dssp             CSSHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999976

>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositide phospholipase C, PLC-gamma-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.1e-22  Score=128.27  Aligned_cols=95  Identities=21%  Similarity=0.333  Sum_probs=83.6

Q ss_pred             cEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCC-CCceeEEEEEeC--CCccEEEEc
Q psy2209          62 QHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ-DNFKYVFQLKHQ--GQDPLVFGA  136 (156)
Q Consensus        62 ~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~-~~~~~~f~i~~~--~~~~~~~~a  136 (156)
                      +++|||+++++  +.|++|||+|.++.|+||+++.+..+.+.|+|.++.+...++. ..++++|.|...  +.++|+|+|
T Consensus         2 iK~G~L~k~~~~~k~W~kR~fvL~~~~L~yy~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~f~i~~~~~~~~~~~~~a   81 (101)
T d2fjla1           2 IKNGILYLEDPVNHEWYPHYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIRPEGKNNRLFVFSISMPSVAQWSLDVAA   81 (101)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEETTEEEECCCCSCTCCCEEECSTTCEEEEETTCSSSCSCEEEEECTTTSSCCEEEEE
T ss_pred             ceEEEEEEEcCCCCCCeEEEEEEECCEEEEEeccccceecceEEcCCceeEeeeeecccccceeEEeccccccEEEEEEe
Confidence            58999999986  6899999999999999999999899999999999998876543 346799999854  346899999


Q ss_pred             CCHHHHHHHHHHHHHHHhcC
Q psy2209         137 DNEQSYERWMKAMREATTLS  156 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a~~~s  156 (156)
                      +|++++.+||.+|++|+..|
T Consensus        82 ~s~~e~~~Wi~ai~~~~~~a  101 (101)
T d2fjla1          82 DSQEELQDWVKKIREVAQTA  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999865

>d2coaa1 b.55.1.1 (A:8-119) Protein kinase c, d2 type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Protein kinase c, d2 type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.4e-22  Score=130.18  Aligned_cols=92  Identities=15%  Similarity=0.267  Sum_probs=78.0

Q ss_pred             cEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCC------CCceeEEEEEeCCCccEE
Q psy2209          62 QHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ------DNFKYVFQLKHQGQDPLV  133 (156)
Q Consensus        62 ~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~------~~~~~~f~i~~~~~~~~~  133 (156)
                      +++|||.|+++  +.|++|||||+++.|+||+++.+..+.|.|+|.++..+.....      ..++++|+|. +.+++||
T Consensus         2 lk~GwL~k~~~~~~~wkkRwFvL~~~~L~YYk~~~~~~p~g~I~L~~~~~v~~~~~~~~~~~~~~~~~F~I~-T~~rtyy   80 (112)
T d2coaa1           2 LREGWVVHYSNKDTLRKRHYWRLDCKCITLFQNNTTNRYYKEIPLSEILTVESAQNFSLVPPGTNPHCFEIV-TANATYF   80 (112)
T ss_dssp             SEEEEEEECCSSSCCCEEEEEEECSSEEEEESSSSCSSCSEEEETTTCCEEEESCCCSSSCTTSCCEEEEEE-CSSCCCC
T ss_pred             ceEEEEEEECCCCCCeeEEEEEEEcceEEEEeccCCCccceEEeeeccccccccccccccccCCCccEEEEE-eCCeEEE
Confidence            58999999986  4899999999999999999999999999999988776654322      2356999998 7778899


Q ss_pred             EEc-----------CCHHHHHHHHHHHHHHHh
Q psy2209         134 FGA-----------DNEQSYERWMKAMREATT  154 (156)
Q Consensus       134 ~~a-----------~s~~~~~~Wi~al~~a~~  154 (156)
                      |.+           ++++++++|+++|++|.+
T Consensus        81 ~~~~~~~~~~~~s~~~~~~~~~W~~aI~~A~~  112 (112)
T d2coaa1          81 VGEMPGGTPGGPSGQGAEAARGWETAIRQALM  112 (112)
T ss_dssp             EECCSCCCSSSCCCCCSHHHHHHHHHHHHHGG
T ss_pred             EecCCccccccccccChHHHHHHHHHHHHhhC
Confidence            966           678889999999999864

>d2dyna_ b.55.1.1 (A:) Dynamin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dynamin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.5e-22  Score=128.07  Aligned_cols=94  Identities=21%  Similarity=0.378  Sum_probs=81.0

Q ss_pred             CcEEEEEEeccC----CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC-CCCceeEEEEEeC-------C
Q psy2209          61 SQHSGWLHKKSG----RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE-QDNFKYVFQLKHQ-------G  128 (156)
Q Consensus        61 ~~~~G~L~k~~~----k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~-~~~~~~~f~i~~~-------~  128 (156)
                      ++++|||.+++.    +.|++|||+|.++.|+||+++.+..+.+.|+|.++.+..... ...++++|.|.++       +
T Consensus         3 vik~GwL~k~~~~~~~~~WkkRwFvL~~~~L~yyk~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~F~l~~~~~~~~~~~   82 (111)
T d2dyna_           3 VIRKGWLTINNIGIMKGGSKEYWFVLTAENLSWYKDDEEKEKKYMLSVDNLKLRDVEKGFMSSKHIFALFNTEQRNVYKD   82 (111)
T ss_dssp             EEEEEEEEETTCCTTTTSSEEEEEEEESSEEEEESSTTCCCEEEEEECTTEEEEEECCCSTTCSEEEEEEESSCSCSBTT
T ss_pred             EEEEeeEEEECCCCCcCCceEEEEEEECCEEEEEcchhhcccccccccccceeEeeccccccccccEEeeeccccccccC
Confidence            679999999864    369999999999999999999888999999999987766543 3457799999753       4


Q ss_pred             CccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         129 QDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       129 ~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .++|+|+|+|++++.+|++||.+|+.
T Consensus        83 ~r~~~l~a~s~ed~~~W~~al~~A~~  108 (111)
T d2dyna_          83 YRQLELACETQEEVDSWKASFLRAGV  108 (111)
T ss_dssp             BSSEEEEESSHHHHHHHHHHHHHTTC
T ss_pred             ceeEEEECCCHHHHHHHHHHHHHhcc
Confidence            47899999999999999999999874

>d1upqa_ b.55.1.1 (A:) Phosphoinositol 3-phosphate binding protein-1, PEPP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phosphoinositol 3-phosphate binding protein-1, PEPP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.8e-22  Score=124.55  Aligned_cols=94  Identities=30%  Similarity=0.637  Sum_probs=82.6

Q ss_pred             CcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEcc--CCCCceeEEEEEeCCCccEEEE
Q psy2209          61 SQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN--EQDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        61 ~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~--~~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      +.++|||+|+++   +.|++|||+|.++.|+||+++.+..+.+.|+|.++.+....  .....+++|.+..++.+.|+|+
T Consensus         9 ~~~~G~L~k~~~~~~k~W~kr~~vL~~~~L~~y~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~~~~~~i~~~~~~~~~~~   88 (107)
T d1upqa_           9 VHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHPGMRTYVLA   88 (107)
T ss_dssp             EEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECTTSCCEEEE
T ss_pred             eeEEEEEEEeCCCCCCCeeEEEEEEECCEEEEecCcccccccceecccceEEEEeccCcccCcceEEEEEcCCCeEEEEE
Confidence            569999999864   47999999999999999999998899999999999887654  3333568999987888899999


Q ss_pred             cCCHHHHHHHHHHHHHHHh
Q psy2209         136 ADNEQSYERWMKAMREATT  154 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~~  154 (156)
                      |+|++++.+|+.+|+.|++
T Consensus        89 a~s~~e~~~Wi~al~~A~~  107 (107)
T d1upqa_          89 ADTLEDLRGWLRALGRASR  107 (107)
T ss_dssp             CSSHHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999974

>d1v88a_ b.55.1.1 (A:) Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Oxysterol binding protein-related protein 8 (ORP-8, KIAA1451)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.9e-22  Score=129.95  Aligned_cols=96  Identities=24%  Similarity=0.423  Sum_probs=79.7

Q ss_pred             CCCCcEEEEEEeccC-CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCC--------
Q psy2209          58 DSGSQHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG--------  128 (156)
Q Consensus        58 ~~~~~~~G~L~k~~~-k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~--------  128 (156)
                      ...+.++|||.+++. +.|++|||||.++.|+||+++.+..+.+.|+|.++.+...+.. ..+++|+|..+.        
T Consensus         5 ~~~~~~~GwLkk~~~~k~WkkRwfvL~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~-~~~~~f~i~~~~~~~~~~~~   83 (130)
T d1v88a_           5 SSGIVMADWLKIRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSK-KDGFCFKLFHPLEQSIWAVK   83 (130)
T ss_dssp             SSSCCEEEEEEECCSSSSCEEEEEEEETTEEEEESCSSSCCCCEEEECSSCEECCCCTT-TSSCEEEEECTTCCCCSCSS
T ss_pred             CCCCeEeCeEEeCCCCCCceEEEEEEeCCEEEEEcCCCCCcceeEEECCCeEEEEcccc-CCCceEEEEcCCCcceeccc
Confidence            345789999977665 5899999999999999999999999999999999988665443 356899886422        


Q ss_pred             ---------------CccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         129 ---------------QDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       129 ---------------~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                                     .+.++|+|++++|+..||++|+.|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~l~A~s~~e~~~Wi~al~~~i~  124 (130)
T d1v88a_          84 GPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALK  124 (130)
T ss_dssp             CTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHHT
T ss_pred             CcccccceeEEecCCcEEEEEECCCHHHHHHHHHHHHHHhh
Confidence                           23367999999999999999999875

>d2coca1 b.55.1.1 (A:8-106) FYVE, RhoGEF and PH domain containing protein 3, FGD3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: FYVE, RhoGEF and PH domain containing protein 3, FGD3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.1e-22  Score=125.39  Aligned_cols=91  Identities=16%  Similarity=0.307  Sum_probs=78.8

Q ss_pred             cEEEEEEeccC-CCceEEEEEEeCC---eEEEEccCCCcccceEEEccCeEEEEccC--CCCceeEEEEEeCCCccEEEE
Q psy2209          62 QHSGWLHKKSG-RNWKRYWFVLKDQ---VMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        62 ~~~G~L~k~~~-k~Wk~r~~vL~~~---~L~~yk~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      +++|||+++.+ +.|++|||||+++   .|+||+++.+..+.+.|+|.++.+.....  ...++++|.|. +++++|+|+
T Consensus         2 ~~~G~L~~~~~~k~W~krwfvL~~~~~~~ly~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~F~i~-~~~r~~~l~   80 (99)
T d2coca1           2 LLCGPLRLSESGETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQ-WAKQSWYLS   80 (99)
T ss_dssp             SSEEEEEEESSSSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEE-ETTEEEEEE
T ss_pred             ceEEEEEccCCCCCccEEEEEEecCCccEEEEECcCccccccccccccceeeeecccccccCCceEEEEE-cCCcEEEEE
Confidence            47899999875 5999999999876   59999999999999999999998776433  23467999998 667889999


Q ss_pred             cCCHHHHHHHHHHHHHHH
Q psy2209         136 ADNEQSYERWMKAMREAT  153 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~  153 (156)
                      |+|+++++.||.+|++|+
T Consensus        81 A~s~~e~~~Wi~aL~~Aa   98 (99)
T d2coca1          81 ASSAELQQQWLETLSTAA   98 (99)
T ss_dssp             ESSHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            999999999999999986

>d2cofa1 b.55.1.1 (A:8-102) KIAA1914 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: KIAA1914
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.9e-22  Score=124.94  Aligned_cols=91  Identities=18%  Similarity=0.402  Sum_probs=79.9

Q ss_pred             EEEEEEeccCCCceEEEEEEeCCeEEEEccCCCc-ccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCCHHH
Q psy2209          63 HSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDI-KALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADNEQS  141 (156)
Q Consensus        63 ~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~-~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s~~~  141 (156)
                      ++|||.+.+.+.|++|||+|.++.|+||+++.+. .+.+.++|.++.+....+ ..++++|.+.+++.++|+|+|+|.++
T Consensus         3 ~s~yl~~~~~~~WkkR~fvL~~~~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~-~~~~~~f~~~~~~~~~~~l~A~s~~e   81 (95)
T d2cofa1           3 TSSYLNVLVNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPS-PDHLYSFRILHKGEELAKLEAKSSEE   81 (95)
T ss_dssp             TCCEEEEEETTEEEEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCB-TTBSCEEEEEETTEEEEEEECSSHHH
T ss_pred             cccchhhhcCCCceEEEEEEECCEEEEEecccccccccccccccceEEEeccc-ccceecceeccccceeEEeeCCCHHH
Confidence            6899999998999999999999999999986554 468999999998866544 44678999988888999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy2209         142 YERWMKAMREATT  154 (156)
Q Consensus       142 ~~~Wi~al~~a~~  154 (156)
                      +++||.+|+.|+.
T Consensus        82 ~~~Wi~~L~~~tg   94 (95)
T d2cofa1          82 MGHWLGLLLSESG   94 (95)
T ss_dssp             HHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999999875

>d1plsa_ b.55.1.1 (A:) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.6e-21  Score=123.31  Aligned_cols=95  Identities=24%  Similarity=0.414  Sum_probs=83.6

Q ss_pred             CCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEcc-CCCCceeEEEEEeCCCccEEEEc
Q psy2209          60 GSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN-EQDNFKYVFQLKHQGQDPLVFGA  136 (156)
Q Consensus        60 ~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~-~~~~~~~~f~i~~~~~~~~~~~a  136 (156)
                      .++++|||.|++.  +.|++|||+|.++.|+||+++.+..+.+.|+|.++.+.... +...++++|.|..++++.|+|+|
T Consensus         4 ~~ikeG~L~k~~~~~k~WkkryfvL~~~~L~~y~~~~~~~p~~~i~l~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~~a   83 (113)
T d1plsa_           4 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQA   83 (113)
T ss_dssp             CCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEEC
T ss_pred             CceEEEEEEEeCCCCCCceEEEEEEECCEEEEEecCCccccceEEECccCeEEeeecccCCcceEEEEecCCCeEEEEEC
Confidence            4679999999875  59999999999999999999999999999999999776654 33446689999988888999999


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q psy2209         137 DNEQSYERWMKAMREATT  154 (156)
Q Consensus       137 ~s~~~~~~Wi~al~~a~~  154 (156)
                      +|.+++.+|+.+|+.|..
T Consensus        84 ~s~~e~~~Wi~ai~~ai~  101 (113)
T d1plsa_          84 AFLEERDAWVRDINKAIK  101 (113)
T ss_dssp             SSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            999999999999998864

>d1u5fa1 b.55.1.1 (A:109-219) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3.6e-21  Score=122.93  Aligned_cols=95  Identities=19%  Similarity=0.407  Sum_probs=82.3

Q ss_pred             CCCcEEEEEEeccC------CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC---CCCceeEEEEEeCCC
Q psy2209          59 SGSQHSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE---QDNFKYVFQLKHQGQ  129 (156)
Q Consensus        59 ~~~~~~G~L~k~~~------k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~---~~~~~~~f~i~~~~~  129 (156)
                      +.+.++|||.+++.      +.|++|||||.++.|+||+++.+..+.+.|+|.++.+.....   ...++++|.|..+++
T Consensus         7 ~~v~k~G~L~k~~~~~~~~~~~W~~r~~vL~~~~L~~y~~~~~~~p~g~i~L~~~~~~~~~~~~~~~~~~~~f~i~~~~~   86 (111)
T d1u5fa1           7 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK   86 (111)
T ss_dssp             SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTS
T ss_pred             CCeeEEEEEEEECCCCCCCcCCceEEEEEEECCEEEeeccccccCcceEEEecccEEEeeccccccccccceEEEEccCC
Confidence            45789999999864      379999999999999999999888899999999988776432   234669999997788


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         130 DPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      +.|+|+|+|++++.+|+++|+.+.
T Consensus        87 ~~~~~~a~s~~e~~~W~~ai~~~i  110 (111)
T d1u5fa1          87 RIYQFTAASPKDAEEWVQQLKFIL  110 (111)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHC
T ss_pred             cEEEEEcCCHHHHHHHHHHHHHHh
Confidence            899999999999999999999874

>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho-GTPase-activating protein 25 (KIAA0053)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=4.5e-21  Score=123.61  Aligned_cols=97  Identities=31%  Similarity=0.609  Sum_probs=82.6

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccC--CCCceeEEEEEeCC------
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNE--QDNFKYVFQLKHQG------  128 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~--~~~~~~~f~i~~~~------  128 (156)
                      ..+.++|||+|++.  +.|++|||+|.++.|+||+++.+..+.+.++|.++.+.....  ....+++|.|....      
T Consensus         6 s~~~k~G~L~K~~~~~k~WkkR~fvL~~~~l~y~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~l~~~~~~~~~~   85 (118)
T d1v89a_           6 SGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNRM   85 (118)
T ss_dssp             SCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCCS
T ss_pred             CCCeEEEEEEEECCCCCCcEEEEEEEECCEEEEecccCcccccceeccCceEEEEeccccccCCCcEEEEecCCCcceec
Confidence            45789999999876  589999999999999999999999999999999988877532  33456999998533      


Q ss_pred             -CccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         129 -QDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       129 -~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                       .++|+|+|++++++.+|+.+|++|+.-
T Consensus        86 ~~~~~~~~a~s~ee~~~Wi~aI~~a~~~  113 (118)
T d1v89a_          86 GQDSYVLMASSQAEMEEWVKFLRRVAGS  113 (118)
T ss_dssp             SCCCEEEECSSHHHHHHHHHHHHHHHHC
T ss_pred             CCcEEEEEcCCHHHHHHHHHHHHHHHcc
Confidence             357999999999999999999999764

>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src kinase-associated phosphoprotein SKAP55 (SCAP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=2e-21  Score=123.06  Aligned_cols=94  Identities=19%  Similarity=0.396  Sum_probs=80.9

Q ss_pred             CcEEEEEEeccC------CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCC---CCceeEEEEEeCCCcc
Q psy2209          61 SQHSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ---DNFKYVFQLKHQGQDP  131 (156)
Q Consensus        61 ~~~~G~L~k~~~------k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~---~~~~~~f~i~~~~~~~  131 (156)
                      ++++|||+|+++      +.|++|||+|.++.|+||+++.+..+.+.|+|.++.+......   ..++++|.|.+.+++.
T Consensus         1 vik~G~L~k~~~~~~~~~~~Wkkr~~vL~~~~L~y~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~   80 (106)
T d1u5da1           1 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRT   80 (106)
T ss_dssp             EEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCC
T ss_pred             CeEEEEEEEECCCCCCCcCCcEEEEEEEECCEEEEEecccccccccccccCCceEeeccccccccCCceeEEEEcCCCcE
Confidence            368999998753      3699999999999999999999999999999999887765432   3356999999777789


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         132 LVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       132 ~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |+|+|+|++++.+|+++|+.++.
T Consensus        81 ~~f~a~s~~e~~~W~~ai~~~i~  103 (106)
T d1u5da1          81 YEFTATSPAEARDWVDQISFLLK  103 (106)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999998763

>d1x1fa1 b.55.1.1 (A:8-143) Signal-transducing adaptor protein 1, STAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Signal-transducing adaptor protein 1, STAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.4e-21  Score=127.65  Aligned_cols=94  Identities=19%  Similarity=0.333  Sum_probs=81.0

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEc-cCCCCceeEEEEEeCCCccEEEEcC
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEAL-NEQDNFKYVFQLKHQGQDPLVFGAD  137 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~-~~~~~~~~~f~i~~~~~~~~~~~a~  137 (156)
                      ..++|||.++++  +.|++|||||.++.|+||+++.+..+.+.|+|.++..... .+..+.+++|.|. +..+.|+|+|+
T Consensus        11 ~~~eG~L~k~~~~~k~WkkrwfvL~~~~L~yY~~~~d~~~~~~i~L~~~~~~~~~~~~~~~~~~F~i~-~~~~~~~f~Ae   89 (136)
T d1x1fa1          11 LYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLV-LPKEEVQLKTE   89 (136)
T ss_dssp             EEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCTTSCCCEEEEE-CSSCCEEEECS
T ss_pred             ccEEEEEEEECCCCCCeEEEEEEEcCCEeEEEeecccccccccccccceeeeeeecccccccceeeec-CCCceEEEEeC
Confidence            458999999876  4899999999999999999999999999999988866553 3444467999998 66678999999


Q ss_pred             CHHHHHHHHHHHHHHHhc
Q psy2209         138 NEQSYERWMKAMREATTL  155 (156)
Q Consensus       138 s~~~~~~Wi~al~~a~~~  155 (156)
                      |++++..|+++|+.++..
T Consensus        90 s~~e~~~Wi~~I~~v~~~  107 (136)
T d1x1fa1          90 NTESGEEWRGFILTVTEL  107 (136)
T ss_dssp             SHHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHHHhc
Confidence            999999999999988754

>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Centaurin-delta 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.6e-21  Score=121.44  Aligned_cols=88  Identities=20%  Similarity=0.394  Sum_probs=77.5

Q ss_pred             cEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCC
Q psy2209          62 QHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  138 (156)
Q Consensus        62 ~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s  138 (156)
                      +++|||.|+++   +.|++|||+|.++.|+||+++.+..+.+.|+|.++..+...    ++++|.|. +.++.|+|+|+|
T Consensus         2 ik~G~L~K~~~~~~~~W~kr~fvL~~~~L~~~~~~~~~~~~~~i~L~~~~~~~~~----~~~~f~i~-~~~~~~~l~a~s   76 (102)
T d2coda1           2 VKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQ----GDNKFEVV-TTQRTFVFRVEK   76 (102)
T ss_dssp             CEEEEEEECCSSSSSCCEEEEEEECSSEEEEEESSCCSSCCCEEETTTEEEEEEE----TTTEEEEE-ESSCCEEEECSS
T ss_pred             cEEEEEEEECCCCCCCceEEEEEEECCEEEEEeccCcceeEEEEEchhceeeccc----cceeEEEE-cCCcEEEEEeCC
Confidence            58999999874   47999999999999999999999999999999998776652    35799998 566789999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy2209         139 EQSYERWMKAMREATT  154 (156)
Q Consensus       139 ~~~~~~Wi~al~~a~~  154 (156)
                      .+++..|+.+|+.|..
T Consensus        77 ~~e~~~Wi~ai~~~i~   92 (102)
T d2coda1          77 EEERNDWISILLNALK   92 (102)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998753

>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Grp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.5e-20  Score=122.38  Aligned_cols=93  Identities=25%  Similarity=0.547  Sum_probs=78.5

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEE-------------
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLK-------------  125 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~-------------  125 (156)
                      +.++|||+|+++  +.|++|||||.++.|+||+++.+..+.+.|+|.++.+....+.. ++++|.+.             
T Consensus         5 p~keG~L~K~~~~~k~WkrR~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   83 (127)
T d1fgya_           5 PDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPR-KPNCFELYNPSHKGQVIKACK   83 (127)
T ss_dssp             CSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECCSS-CSSEEEEECSSSTTCCCCCEE
T ss_pred             CceEEEEEEECCCCCCcEEEEEEEECCEEEEEccCCCccccceEeCCCeEEEEccCCC-CCceEEEeccccccccccccc
Confidence            579999999975  58999999999999999999999999999999999887765433 34556553             


Q ss_pred             --------eCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         126 --------HQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       126 --------~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                              .+..+.|+|+|+|.+++..||.||+.|..
T Consensus        84 ~~~~~~~~~~~~~~~~f~a~s~~e~~~Wi~aL~~~i~  120 (127)
T d1fgya_          84 TEADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASIS  120 (127)
T ss_dssp             ECTTSCEEECCCSEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cccceeEeeCCCeEEEEECCCHHHHHHHHHHHHHHHc
Confidence                    25567899999999999999999998863

>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=8.6e-21  Score=119.39  Aligned_cols=94  Identities=21%  Similarity=0.365  Sum_probs=80.2

Q ss_pred             CCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCC---CCceeEEEEEeCCCccEEE
Q psy2209          60 GSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ---DNFKYVFQLKHQGQDPLVF  134 (156)
Q Consensus        60 ~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~---~~~~~~f~i~~~~~~~~~~  134 (156)
                      .++++|||.|+++  +.|++|||+|.++.|+||+++.+..+.+.|+|.++........   ....++|.|. .+++.|+|
T Consensus         2 ~vik~G~L~K~~~~~~~Wkkr~fvL~~~~l~yy~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~-~~~~~~~~   80 (103)
T d1eaza_           2 AVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIV-TTSRTFYV   80 (103)
T ss_dssp             CCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEE-CSSCEEEE
T ss_pred             ceEEEEEEEEECCCCCCeeEEEEEEECCEEEEEecccCcccceEEEccceEEeeccccccccccceEEEEE-eCCEEEEE
Confidence            3679999999875  5899999999999999999998888999999988876554322   2345899998 66778999


Q ss_pred             EcCCHHHHHHHHHHHHHHHh
Q psy2209         135 GADNEQSYERWMKAMREATT  154 (156)
Q Consensus       135 ~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +|+|++++.+|+.+|+.|..
T Consensus        81 ~a~s~~e~~~W~~aI~~ai~  100 (103)
T d1eaza_          81 QADSPEEMHSWIKAVSGAIV  100 (103)
T ss_dssp             ECSSHHHHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999864

>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Src-associated adaptor protein Skap2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=8.8e-21  Score=133.80  Aligned_cols=96  Identities=19%  Similarity=0.395  Sum_probs=83.5

Q ss_pred             CCCcEEEEEEeccC------CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCC---CCceeEEEEEeCCC
Q psy2209          59 SGSQHSGWLHKKSG------RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQ---DNFKYVFQLKHQGQ  129 (156)
Q Consensus        59 ~~~~~~G~L~k~~~------k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~---~~~~~~f~i~~~~~  129 (156)
                      ..+.++|||.|+++      +.|++|||||.++.|+||+++.+..+.+.|+|.++.+......   ..++++|.|.++++
T Consensus       102 ~~~~k~G~L~K~~~~~~~~~~~Wkkr~fvL~~~~L~yy~~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~~~~F~i~~~~~  181 (209)
T d1u5ea1         102 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK  181 (209)
T ss_dssp             SSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSTTGGGEEEEECSSS
T ss_pred             CCeeEEEEEEEecCCCCCccccceEEEEEEECCEEEEEecCCCCccceEEEecceeeeeccccccccCCCcEEEEEcCCC
Confidence            34578999999863      5899999999999999999999999999999999988775432   34679999997788


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         130 DPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      ++|+|+|++.+++..||.+|+.+..
T Consensus       182 r~~~f~a~s~~e~~~Wi~al~~~i~  206 (209)
T d1u5ea1         182 RIYQFTAASPKDAEEWVQQLKFILQ  206 (209)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCHHHHHHHHHHHHHHHH
Confidence            8999999999999999999998763

>d2j59m1 b.55.1.1 (M:931-1063) Rho GTPase-activating protein 21 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho GTPase-activating protein 21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.8e-20  Score=123.44  Aligned_cols=93  Identities=27%  Similarity=0.566  Sum_probs=74.8

Q ss_pred             cEEEEEEecc---------C---CCceEEEEEEeCCeEEEEccCCCc----ccceEEEccCeEEEEccCCCCceeEEEEE
Q psy2209          62 QHSGWLHKKS---------G---RNWKRYWFVLKDQVMYKYKASEDI----KALLSIPVLGYELEALNEQDNFKYVFQLK  125 (156)
Q Consensus        62 ~~~G~L~k~~---------~---k~Wk~r~~vL~~~~L~~yk~~~~~----~~~~~i~L~~~~~~~~~~~~~~~~~f~i~  125 (156)
                      .++|||+++.         +   +.|++|||||.++.|+||+++.+.    .+.+.|+|.++.+....+...++++|.|.
T Consensus         2 ~KeG~L~~k~~~~~~~kk~~~~~k~Wkkr~fvL~~~~L~~y~~~~~~~~~~~~~~~i~L~~~~v~~~~~~~~r~~~F~i~   81 (133)
T d2j59m1           2 AKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFRLT   81 (133)
T ss_dssp             CEEEEEEEEECC------------CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSSCSCSSEEEEE
T ss_pred             CceEEEEeeccccccccccCCCCCCceEEEEEEeCCEEEEEeccccccccccccccceecceEEEEcccccccCceeEEe
Confidence            4899998541         1   379999999999999999986553    35788999999988877777788999999


Q ss_pred             eCCCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         126 HQGQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       126 ~~~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                       +.++.|+|+|+|++++..||.+|+.|+..
T Consensus        82 -~~~~~~~f~A~s~~e~~~Wi~ai~~a~~~  110 (133)
T d2j59m1          82 -TSDCECLFQAEDRDDMLAWIKTIQESSNL  110 (133)
T ss_dssp             -CSSCEEEEECSSHHHHHHHHHHHHHHCCC
T ss_pred             -cCCCEEEEEeCCHHHHHHHHHHHHHHHhc
Confidence             55567999999999999999999987643

>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Insulin receptor substrate 1, IRS-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.9e-20  Score=118.04  Aligned_cols=89  Identities=19%  Similarity=0.316  Sum_probs=74.8

Q ss_pred             CcEEEEEEeccCCCceEEEEEEeCC-------eEEEEccCCC-----cccceEEEccCeEEEEccCCCCceeEEEEEeCC
Q psy2209          61 SQHSGWLHKKSGRNWKRYWFVLKDQ-------VMYKYKASED-----IKALLSIPVLGYELEALNEQDNFKYVFQLKHQG  128 (156)
Q Consensus        61 ~~~~G~L~k~~~k~Wk~r~~vL~~~-------~L~~yk~~~~-----~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~  128 (156)
                      +.++|||+|+  +.|++|||+|.+.       .|+||+++.+     ..+.+.|+|.++......+....+++|.|. +.
T Consensus         2 v~k~GyL~K~--k~WkkR~fvL~~~~~~~~~~~L~yy~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~-t~   78 (103)
T d1qqga1           2 VRKVGYLRKP--KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVALY-TR   78 (103)
T ss_dssp             EEEEEEEECT--TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEEEEE-ES
T ss_pred             cceeEEEEEc--CCCCEEEEEEecccccCCccEEEEEcchhhhhcccccccceEecceeeEEeecccCCCceEEEEE-eC
Confidence            5799999887  6899999999864       5999987533     446889999998877766666678999998 56


Q ss_pred             CccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         129 QDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       129 ~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      +++|+|+|+|++++..||++|++.
T Consensus        79 ~r~~~l~A~s~~e~~~Wi~al~~l  102 (103)
T d1qqga1          79 DEHFAIAADSEAEQDSWYQALLQL  102 (103)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCHHHHHHHHHHHHhh
Confidence            788999999999999999999864

>d1wg7a_ b.55.1.1 (A:) Dedicator of cytokinesis protein 9, DOCK9 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dedicator of cytokinesis protein 9, DOCK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.8e-20  Score=125.87  Aligned_cols=95  Identities=25%  Similarity=0.386  Sum_probs=78.3

Q ss_pred             CCCcEEEEEEeccC--------CCceEEEEEEeCC-----eEEEEccCC-CcccceEEEccCeEEEEccCCCCceeEEEE
Q psy2209          59 SGSQHSGWLHKKSG--------RNWKRYWFVLKDQ-----VMYKYKASE-DIKALLSIPVLGYELEALNEQDNFKYVFQL  124 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--------k~Wk~r~~vL~~~-----~L~~yk~~~-~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i  124 (156)
                      ..+.++|||+|++.        +.|++|||||.++     .|.||+++. +..+.+.|+|.++.++...+. .++++|.|
T Consensus        16 ~~v~k~G~L~K~~~~~~~~~~~k~WkkR~fvL~~~~~~~~~L~yy~~~~~~~~~~g~i~l~~~~~~~~~~~-~~~~~F~i   94 (150)
T d1wg7a_          16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGVVQNNK-VRRFAFEL   94 (150)
T ss_dssp             CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEECCCCS-SCTTEEEE
T ss_pred             CCEeEEEEEEEecCCCCcccccccceEEEEEEEcCcCCceeEEEEeccccccccccccccccccccccCcc-ccceEEEE
Confidence            45789999999864        4799999999854     477777654 457799999999988766543 46799999


Q ss_pred             EeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         125 KHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       125 ~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .+++.+.|+|+|+++++++.||.+|+.|+.
T Consensus        95 ~~~~~~~~~l~A~s~~e~~~Wi~aL~~~i~  124 (150)
T d1wg7a_          95 KMQDKSSYLLAADSEVEMEEWITILNKILQ  124 (150)
T ss_dssp             ECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EcCCCeEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            977788999999999999999999998764

>d1v5ua_ b.55.1.1 (A:) SET binding factor 1, Sbf1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SET binding factor 1, Sbf1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=2.6e-20  Score=119.75  Aligned_cols=95  Identities=25%  Similarity=0.386  Sum_probs=78.1

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEe--CCeEEEEccCCCcccceEEEccCeEEEEccCC-------CCceeEEEEEeC
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLK--DQVMYKYKASEDIKALLSIPVLGYELEALNEQ-------DNFKYVFQLKHQ  127 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~--~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~-------~~~~~~f~i~~~  127 (156)
                      ..+.++|||.|++.  +.|++|||+|.  ++.|+||+++.+..+.+.|+|.++..+.....       ....++|.+. +
T Consensus         6 s~~~~eG~L~k~~~~~k~WkkR~fvL~~~~~~L~~~~~~~~~~p~g~i~l~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~   84 (117)
T d1v5ua_           6 SGRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVK-T   84 (117)
T ss_dssp             CSSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEE-E
T ss_pred             CCCeEEEEEEEECCCCCCceEEEEEEeCCCCEEEecccccccCcceEEEecceEEEeecccccccccccccceEEEee-C
Confidence            45789999999976  58999999995  46899999999999999999998887664221       1123678776 6


Q ss_pred             CCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         128 GQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       128 ~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .++.|+|+|+|++++.+||.+|+.|+.
T Consensus        85 ~~~~~~~~a~s~~e~~~Wv~~l~~ai~  111 (117)
T d1v5ua_          85 TRRVYNFCAQDVPSAQQWVDRIQSCLS  111 (117)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHTTCC
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            668899999999999999999998753

>d2i5fa1 b.55.1.1 (A:244-347) Pleckstrin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.1e-20  Score=115.13  Aligned_cols=94  Identities=19%  Similarity=0.358  Sum_probs=77.0

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCC--eEEEEccCCCcccceEEEccCeEEEEccCC-----CCceeEEEEEeCCCcc
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQ--VMYKYKASEDIKALLSIPVLGYELEALNEQ-----DNFKYVFQLKHQGQDP  131 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~--~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~-----~~~~~~f~i~~~~~~~  131 (156)
                      ++++|||.|+++  +.|++|||+|.++  .|+||+.+.+..+.+.|++.++.+....+.     ....++|.+.+++++.
T Consensus         2 v~k~G~L~k~~~~~k~WkkR~fvL~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (104)
T d2i5fa1           2 IIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEVH   81 (104)
T ss_dssp             EEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEECTTCCE
T ss_pred             EEEEEEEEEECCCCCCcEEEEEEEECCeeEEEEEcCccccCccceEeecceEEEEeccCcccccccCccEEEEECCCCeE
Confidence            468999999986  5899999999875  455667777788899999999888764432     2245899998888889


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         132 LVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       132 ~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |+|+|+|++++.+|+++|+.|+.
T Consensus        82 ~~~~a~s~~e~~~W~~ai~~a~r  104 (104)
T d2i5fa1          82 YFLQAATPKERTEWIKAIQMASR  104 (104)
T ss_dssp             EEEECSSHHHHHHHHHHHHHHHC
T ss_pred             EEEEcCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999863

>d1btna_ b.55.1.1 (A:) beta-spectrin {Mouse (Mus musculus), brain [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Mouse (Mus musculus), brain [TaxId: 10090]

Probab=99.83  E-value=3.8e-20  Score=117.10  Aligned_cols=90  Identities=22%  Similarity=0.449  Sum_probs=77.1

Q ss_pred             EEEEEEecc----------CCCceEEEEEEeCCeEEEEccCCC------cccceEEEccCeEEEEccCCCCceeEEEEEe
Q psy2209          63 HSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASED------IKALLSIPVLGYELEALNEQDNFKYVFQLKH  126 (156)
Q Consensus        63 ~~G~L~k~~----------~k~Wk~r~~vL~~~~L~~yk~~~~------~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~  126 (156)
                      ++|||+++.          .+.|++|||+|.++.|+||+++.+      ..+.+.|++.++.+....+...++++|.|..
T Consensus         1 ~eG~L~rk~~~~~~~kk~~~~~Wk~r~~vL~~~~L~~yk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~f~i~~   80 (106)
T d1btna_           1 MEGFLNRKHEWEAHNKKASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRL   80 (106)
T ss_dssp             CEEEEEEEEEECSTTCBCSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEEC
T ss_pred             CeeeEEEeeEccCCCcccCCCCCcEEEEEEECCEEEEEeChhhcccccccCcceeEEeccceeeeccccccCcceEeecc
Confidence            479999873          137999999999999999998654      3347789999998888777777889999997


Q ss_pred             CCCccEEEEcCCHHHHHHHHHHHHHH
Q psy2209         127 QGQDPLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       127 ~~~~~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                      .+++.|+|+|+|.+++..|+++|+.|
T Consensus        81 ~~~~~~~~~a~s~~e~~~W~~ai~~A  106 (106)
T d1btna_          81 SDGNEYLFQAKDDEEMNTWIQAISSA  106 (106)
T ss_dssp             TTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHhC
Confidence            78889999999999999999999876

>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Calcium-dependent activator protein for secretion, CAPS
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.1e-20  Score=119.99  Aligned_cols=96  Identities=26%  Similarity=0.463  Sum_probs=73.0

Q ss_pred             CCCcEEEEEEeccC---CCceEEEEEEeCCe--EEEEccC--CCcccceEEEccCeEEEEccCC---CCceeEEEEEeCC
Q psy2209          59 SGSQHSGWLHKKSG---RNWKRYWFVLKDQV--MYKYKAS--EDIKALLSIPVLGYELEALNEQ---DNFKYVFQLKHQG  128 (156)
Q Consensus        59 ~~~~~~G~L~k~~~---k~Wk~r~~vL~~~~--L~~yk~~--~~~~~~~~i~L~~~~~~~~~~~---~~~~~~f~i~~~~  128 (156)
                      ..+.++|||+|+++   +.|++|||||.++.  +|||...  .+..+.+.|++.++.+......   ....++|.+. +.
T Consensus         6 ~~~~~~G~L~K~g~~~~k~WkkRwfvL~~~~~~~yy~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~i~-~~   84 (126)
T d1wi1a_           6 SGMKHSGYLWAIGKNVWKRWKKRFFVLVQVSQYTFAMCSYREKKAEPQELLQLDGYTVDYTDPQPGLEGGRAFFNAV-KE   84 (126)
T ss_dssp             CCEEEEEEEEEECSSSCCSCEEEEEEEEEEETTEEEEEECCSSSSCCSEEEECSSCEEEECCCCSSCCSCSSEEEEE-CS
T ss_pred             CCCcEEEEEEEECCCCCCCceEEEEEEeCCceEEEEEcccccccccceeeeeeceeeeeeccccccccccceeEEec-cC
Confidence            44679999999975   58999999997543  4444433  3345689999998887764332   2234667776 78


Q ss_pred             CccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         129 QDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       129 ~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      +++|+|+|+|++++.+||++|+.|+.-
T Consensus        85 ~r~~~f~A~s~~e~~~Wv~al~~a~~~  111 (126)
T d1wi1a_          85 GDTVIFASDDEQDRILWVQAMYRATGQ  111 (126)
T ss_dssp             SCEEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CeEEEEEECCHHHHHHHHHHHHHHHHh
Confidence            889999999999999999999998753

>d1btka_ b.55.1.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.4e-20  Score=125.31  Aligned_cols=95  Identities=20%  Similarity=0.261  Sum_probs=77.3

Q ss_pred             CCcEEEEEEeccC-------CCceEEEEEEeCCeEEEEccCCCc----ccceEEEccCeEEEEccCCC------------
Q psy2209          60 GSQHSGWLHKKSG-------RNWKRYWFVLKDQVMYKYKASEDI----KALLSIPVLGYELEALNEQD------------  116 (156)
Q Consensus        60 ~~~~~G~L~k~~~-------k~Wk~r~~vL~~~~L~~yk~~~~~----~~~~~i~L~~~~~~~~~~~~------------  116 (156)
                      .++++|||.|++.       +.|++|||||.++.|+||+++.+.    .+.|.|+|.++..+...+..            
T Consensus         2 ~vi~eG~L~Kr~~~k~k~~~~~WkrRwFVL~~~~L~Yyk~~~~~~~~~~~kG~I~L~~~~~v~~~~~~~~~~~~~~~~~~   81 (169)
T d1btka_           2 AVILESIFLKRSQQKKKTSPLNFKKCLFLLTVHKLSYYEYDFERGRRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRR   81 (169)
T ss_dssp             CCCEEEEEEEECCCSSTTCCCCEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---
T ss_pred             cEEEEEEEEEecCCCCCcCcCCceEEEEEEECCEEeeeccccccccccCccceEeccceEEEEeecccCCCCcccccccc
Confidence            3689999999874       169999999999999999876553    36899999998876532211            


Q ss_pred             --------------CceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         117 --------------NFKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       117 --------------~~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                                    ...++|+|. +.+++|+|+|+|.+|++.||++|+.++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~F~I~-t~~rt~~l~A~s~eE~~~WI~aL~~~i~~  133 (169)
T d1btka_          82 GEESSEMEQISIIERFPYPFQVV-YDEGPLYVFSPTEELRKRWIHQLKNVIRY  133 (169)
T ss_dssp             ------CCTTHHHHCCCEEEEEE-ETTCCEEEEESCHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccccCcceEEE-eCCcEEEEECCCHHHHHHHHHHHHHHHHh
Confidence                          234899998 56789999999999999999999998753

>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein kinase-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: 3-phosphoinositide dependent protein kinase-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2e-20  Score=125.26  Aligned_cols=90  Identities=12%  Similarity=0.056  Sum_probs=77.0

Q ss_pred             CCCcEEEEEEeccCCCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEEcCC
Q psy2209          59 SGSQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFGADN  138 (156)
Q Consensus        59 ~~~~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~a~s  138 (156)
                      ..+++.|||+|++++.|++|||+|+++.|.||+++.+..+.|.|+|..+..+..    ..+++|.|. +.+++|+|+|.+
T Consensus        46 ~~ilK~G~L~Kr~~~~wkkR~FvL~~~~L~YYkd~~~~~~kG~I~L~~~~~v~~----~~~~~F~I~-t~~Rty~l~a~~  120 (147)
T d1w1ha_          46 NLILKMGPVDKRKGLFARRRQLLLTEGPHLYYVDPVNKVLKGEIPWSQELRPEA----KNFKTFFVH-TPNRTYYLMDPS  120 (147)
T ss_dssp             CCEEEEEEEEECCTTSCEEEEEEEETTTEEEEEETTTTEEEEEECCCTTCEEEE----EETTEEEEE-CSSCEEEEECTT
T ss_pred             CeEEEEEEEEeecCCcceEEEEEEcCCeeEEEeCCCcccccceEEecccccccc----ccCceEEEe-cCceEEEEEcCh
Confidence            446799999999988999999999999999999998888999999987765543    234799998 667899999866


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy2209         139 EQSYERWMKAMREATT  154 (156)
Q Consensus       139 ~~~~~~Wi~al~~a~~  154 (156)
                       .++.+||.+|+.+..
T Consensus       121 -~d~~~Wv~aI~~v~~  135 (147)
T d1w1ha_         121 -GNAHKWCRKIQEVWR  135 (147)
T ss_dssp             -SCHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHHH
Confidence             589999999998753

>d1wjma_ b.55.1.1 (A:) beta-spectrin {Human (Homo sapiens), brain 2 isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Human (Homo sapiens), brain 2 isoform [TaxId: 9606]

Probab=99.82  E-value=1e-19  Score=118.04  Aligned_cols=96  Identities=24%  Similarity=0.400  Sum_probs=79.1

Q ss_pred             CCCcEEEEEEecc----------CCCceEEEEEEeCCeEEEEccCCCccc------ceEEEccCeEEEEccCCCCceeEE
Q psy2209          59 SGSQHSGWLHKKS----------GRNWKRYWFVLKDQVMYKYKASEDIKA------LLSIPVLGYELEALNEQDNFKYVF  122 (156)
Q Consensus        59 ~~~~~~G~L~k~~----------~k~Wk~r~~vL~~~~L~~yk~~~~~~~------~~~i~L~~~~~~~~~~~~~~~~~f  122 (156)
                      ..+.++|||.++.          .+.|++|||||.++.|+||+++.+..+      ...+.+..+.+....+...++++|
T Consensus         6 ~g~~~eG~L~rk~~~~~~~kr~~~k~Wkkrw~vL~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   85 (123)
T d1wjma_           6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQGSVAFDYRKRKHVF   85 (123)
T ss_dssp             CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEEEECTTCSSCSSEE
T ss_pred             CCCeeEEEEEEEeeccccCcccCCCCCcEEEEEEECCEEEEEecchhccccccccccccccccceeEEecccccccCcEE
Confidence            3467899998863          248999999999999999987644332      456667777777777777788999


Q ss_pred             EEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         123 QLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       123 ~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .|.+.+.+.|+|+|+|++++..||++|+.|+.
T Consensus        86 ~i~~~~~~~~~l~a~s~~e~~~Wi~aI~~a~~  117 (123)
T d1wjma_          86 KLGLQDGKEYLFQAKDEAEMSSWLRVVNAAIA  117 (123)
T ss_dssp             EEECSSSCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEcCCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            99988888999999999999999999998864

>d2elba2 b.55.1.1 (A:274-374) DCC-interacting protein 13-alpha, APPL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: DCC-interacting protein 13-alpha, APPL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.6e-21  Score=119.76  Aligned_cols=92  Identities=14%  Similarity=0.406  Sum_probs=70.9

Q ss_pred             CCcEEEEEEeccC-----CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCC-CccEE
Q psy2209          60 GSQHSGWLHKKSG-----RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQG-QDPLV  133 (156)
Q Consensus        60 ~~~~~G~L~k~~~-----k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~-~~~~~  133 (156)
                      .+.++|||+++.+     +.|++|||||.++.|+||+.. +..+.+.|+|.++.+....+ ..+.++|.|...+ .++|+
T Consensus         4 ~~~k~G~L~k~~~~g~~~k~W~kRwfvL~~~~L~y~~~~-~~~~~~~i~l~~~~v~~~~~-~~~~~~f~i~~~~~~~~~~   81 (101)
T d2elba2           4 LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARG-DVAGGLAMDIDNCSVMAVDC-EDRRYCFQITSFDGKKSSI   81 (101)
T ss_dssp             CSCCEEEEEECSCCC----CCCEEEEEEETTEEEEECTT-CCCE----EEEECCCCCCCC-CCSSSSSEECCCSSSCCCC
T ss_pred             CccEeEEEEEeccCCCCccccEEEEEEEeCCEEEEEccC-CcccceEEEecccccccccc-cCCcceEEEEeecccceEE
Confidence            3568999999753     479999999999999999874 45678889998877665544 3467999998543 46899


Q ss_pred             EEcCCHHHHHHHHHHHHHHH
Q psy2209         134 FGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       134 ~~a~s~~~~~~Wi~al~~a~  153 (156)
                      |+|+|++++.+||.||+.++
T Consensus        82 l~A~s~~e~~~Wi~al~~vs  101 (101)
T d2elba2          82 LQAESKKDHEEWICTINNIS  101 (101)
T ss_dssp             EECSSHHHHHHHHHHHHHTC
T ss_pred             EECCCHHHHHHHHHHHHhcC
Confidence            99999999999999999874

>d1omwa2 b.55.1.1 (A:550-668) G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: G-protein coupled receptor kinase 2 (beta-adrenergic receptor kinase 1)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.82  E-value=3e-19  Score=115.43  Aligned_cols=93  Identities=17%  Similarity=0.287  Sum_probs=74.1

Q ss_pred             CCCcEEEEEEeccC---CCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEEEE
Q psy2209          59 SGSQHSGWLHKKSG---RNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLVFG  135 (156)
Q Consensus        59 ~~~~~~G~L~k~~~---k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~  135 (156)
                      .+++++|||.|+++   +.|++|||||.++.|+||+++.+  +.+.|+|.++..+..... ..+++|.+.++++++|+|+
T Consensus         8 ~~~i~eG~L~K~g~~~~~~WkkR~fvL~~~~L~yy~~~~~--~~~~i~l~~~~~v~~~~~-~~~~~f~i~~~~~~~~~f~   84 (119)
T d1omwa2           8 KDCIMHGYMSKMGNPFLTQWQRRYFYLFPNRLEWRGEGEA--PQSLLTMEEIQSVEETQI-KERKCLLLKIRGGKQFVLQ   84 (119)
T ss_dssp             SCCCEEEEEEECC------CEEEEEEEETTEEEEECTTSC--CCEEEEGGGEEEEEEEES-SSCEEEEEEETTSCEEEEE
T ss_pred             CCeEEEEEEEEECCCCCCCeEEEEEEEEcCeEEEEecccc--cCccceeccccccccccc-cccceEEEEcCCCcEEEEE
Confidence            34789999999975   36999999999999999987654  467788877665544332 3557888887888899999


Q ss_pred             cCCHHHHHHHHHHHHHHHh
Q psy2209         136 ADNEQSYERWMKAMREATT  154 (156)
Q Consensus       136 a~s~~~~~~Wi~al~~a~~  154 (156)
                      |+|.+++..|+.+|+.|..
T Consensus        85 a~s~~e~~~W~~al~~a~~  103 (119)
T d1omwa2          85 CDSDPELVQWKKELRDAYR  103 (119)
T ss_dssp             CSSHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999999999998754

>d1v5pa_ b.55.1.1 (A:) Tapp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Tapp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=2.5e-19  Score=116.72  Aligned_cols=94  Identities=14%  Similarity=0.317  Sum_probs=71.4

Q ss_pred             CcEEEEEEeccC---CCceEEEEEEe--CCeEEEEccCCCcccc-----eEEEccCeEEEEcc---CCCCceeEEEEEeC
Q psy2209          61 SQHSGWLHKKSG---RNWKRYWFVLK--DQVMYKYKASEDIKAL-----LSIPVLGYELEALN---EQDNFKYVFQLKHQ  127 (156)
Q Consensus        61 ~~~~G~L~k~~~---k~Wk~r~~vL~--~~~L~~yk~~~~~~~~-----~~i~L~~~~~~~~~---~~~~~~~~f~i~~~  127 (156)
                      ..++|||++++.   +.|++|||||.  ++.|+||+++.+..+.     +.|.+..+......   ......++|.+. +
T Consensus        15 ~~~~GyL~k~~~~~~k~WkrRwFvL~~~~~~L~yy~~~~~~~~~g~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~   93 (126)
T d1v5pa_          15 NRICGFLDIEDNENSGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVIN-A   93 (126)
T ss_dssp             CCEECCEEEECTTCSSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEE-C
T ss_pred             CceeeeEEEECCCCCCCeeEEEEEEEcCCCeEEEeeccccccccceeecccceeeeeeccccccccccccccceEEEc-C
Confidence            458999998864   48999999994  7899999988766654     45555444433322   122344888887 7


Q ss_pred             CCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         128 GQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       128 ~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      ..+.|+|+|+|++++.+||++|+.|+..
T Consensus        94 ~~r~~~l~Aes~~e~~~Wi~aL~~A~~~  121 (126)
T d1v5pa_          94 LSQRYFLQANDQKDLKDWVEALNQASKS  121 (126)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHTTTT
T ss_pred             CCeeEEEECCCHHHHHHHHHHHHHHhcc
Confidence            7789999999999999999999999754

>d1droa_ b.55.1.1 (A:) beta-spectrin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: beta-spectrin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=7.6e-20  Score=118.59  Aligned_cols=97  Identities=18%  Similarity=0.383  Sum_probs=78.6

Q ss_pred             CCCcEEEEEEeccC----------CCceEEEEEEeCCeEEEEccCCCccc--------ceEEEccCeEEEEccCCCCcee
Q psy2209          59 SGSQHSGWLHKKSG----------RNWKRYWFVLKDQVMYKYKASEDIKA--------LLSIPVLGYELEALNEQDNFKY  120 (156)
Q Consensus        59 ~~~~~~G~L~k~~~----------k~Wk~r~~vL~~~~L~~yk~~~~~~~--------~~~i~L~~~~~~~~~~~~~~~~  120 (156)
                      ....++|||+++..          +.|++|||||.++.|+||+++.+..+        ...+.+.++.+....+...+++
T Consensus         6 ~~~~~eG~L~rk~~~~~~~kk~~~~~W~kr~~vL~~~~L~yy~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~   85 (122)
T d1droa_           6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAIEIASDYTKKKH   85 (122)
T ss_dssp             SSSSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCCEECCSSSSSTT
T ss_pred             CCcceEEEEEEeecccccCcccCCCCceEEEEEEeCCEEEEEcCcccccccCcccccccceEeccceEEEeccccccccc
Confidence            34679999998741          36999999999999999998765433        3455666666666666666779


Q ss_pred             EEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         121 VFQLKHQGQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       121 ~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      +|.|..++.+.|+|+|+|+++++.||.+|+.++..
T Consensus        86 ~~~l~~~~~~~~~f~a~s~~d~~~Wv~al~~~~~~  120 (122)
T d1droa_          86 VLRVKLANGALFLLQAHDDTEMSQWVTSLKAQSDS  120 (122)
T ss_dssp             EEEEECSSSCEEEEECSSSHHHHHHHHHHHHHHTC
T ss_pred             eEEEECCCCcEEEEECCCHHHHHHHHHHHHHHHhc
Confidence            99999888889999999999999999999998764

>d1v5ma_ b.55.1.1 (A:) SH2 and PH domain-containing adapter protein APS {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: SH2 and PH domain-containing adapter protein APS
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=1.3e-19  Score=119.85  Aligned_cols=96  Identities=14%  Similarity=0.201  Sum_probs=77.5

Q ss_pred             CCCcEEEEEEecc----------CCCceEEEEEEeCC------eEEEEccCCCcccceEEEccCeEEEE---ccCCCCce
Q psy2209          59 SGSQHSGWLHKKS----------GRNWKRYWFVLKDQ------VMYKYKASEDIKALLSIPVLGYELEA---LNEQDNFK  119 (156)
Q Consensus        59 ~~~~~~G~L~k~~----------~k~Wk~r~~vL~~~------~L~~yk~~~~~~~~~~i~L~~~~~~~---~~~~~~~~  119 (156)
                      .++.++|||.++.          .+.|++|||||.++      .|.||+++.+..+.+.|.|..+....   ..+...++
T Consensus        16 ~~v~keG~L~~~~~~~~~~~~~~~~~WkkrwfvL~~~~~~~~~~L~yy~~~~~~k~~g~i~l~~~~~~~~~~~~~~~~~~   95 (136)
T d1v5ma_          16 VDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLEMPEKD   95 (136)
T ss_dssp             CSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCBCCCCCCSSSCCCT
T ss_pred             ceeeEEEEEEeeccccccCCCCCCCCceEEEEEEeCCcccchhhhhhhCcccccCcCcceecccceeeeeeccccCCCCC
Confidence            4467999998641          14899999999875      48899999999999999997755433   22334467


Q ss_pred             eEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         120 YVFQLKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       120 ~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      ++|.|.+.+.+.|+|+|+|++++++||++|+.|..
T Consensus        96 ~~F~l~t~~~~~y~f~A~s~~e~~~Wv~ai~~ai~  130 (136)
T d1v5ma_          96 NTFVLKVENGAEYILETIDSLQKHSWVADIQGCVD  130 (136)
T ss_dssp             TEECCBCTTSCBEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHHh
Confidence            99999877777899999999999999999998864

>d1x1ga1 b.55.1.1 (A:8-123) Pleckstrin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Pleckstrin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1e-19  Score=116.56  Aligned_cols=95  Identities=20%  Similarity=0.404  Sum_probs=73.8

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEeCCe--EEEEc-cCCCcccceEEEccCeEEEEccCC--------CCceeEEEEE
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLKDQV--MYKYK-ASEDIKALLSIPVLGYELEALNEQ--------DNFKYVFQLK  125 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~--L~~yk-~~~~~~~~~~i~L~~~~~~~~~~~--------~~~~~~f~i~  125 (156)
                      ..++++|||.|++.  +.|++|||+|.+..  ++||. +.....|.+.|+|.++.+....+.        ....++|.|.
T Consensus         9 ~~v~k~G~L~K~~~~~k~WkkR~fvL~~~~~~~~~~~~~~~~~~p~~~i~L~~~~i~~~~~~~~~~~~~~~~~~~~f~i~   88 (116)
T d1x1ga1           9 GTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVI   88 (116)
T ss_dssp             SEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEEC
T ss_pred             CCEEEEEEEEEEcCCCCCCceEEEEEECCCcEEEEeccccccccceeEEEcCCCEEEEecccCcccccccccccceeEEE
Confidence            45679999999876  58999999997644  34443 334456799999998877664322        1234789998


Q ss_pred             eCCCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         126 HQGQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       126 ~~~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ..+.+.|+|+|++++++.+|+.||++++
T Consensus        89 ~~~~~~~~f~a~s~ee~~~Wi~ai~~~t  116 (116)
T d1x1ga1          89 TKDDTHYYIQASSKAERAEWIEAIKKLT  116 (116)
T ss_dssp             CTTCCCEEECCSSHHHHHHHHHHHHHHS
T ss_pred             eCCCeEEEEECCCHHHHHHHHHHHHhhC
Confidence            7788899999999999999999999875

>d1unqa_ b.55.1.1 (A:) Rac-alpha serine/threonine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac-alpha serine/threonine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-19  Score=116.17  Aligned_cols=95  Identities=18%  Similarity=0.416  Sum_probs=70.3

Q ss_pred             CCcEEEEEEeccC--CCceEEEEEEeC-CeEEEEccCCCcccceEEEccCeEEEE---ccCCCCceeEEEEEeCC---Cc
Q psy2209          60 GSQHSGWLHKKSG--RNWKRYWFVLKD-QVMYKYKASEDIKALLSIPVLGYELEA---LNEQDNFKYVFQLKHQG---QD  130 (156)
Q Consensus        60 ~~~~~G~L~k~~~--k~Wk~r~~vL~~-~~L~~yk~~~~~~~~~~i~L~~~~~~~---~~~~~~~~~~f~i~~~~---~~  130 (156)
                      .++++|||+|+++  +.|++|||||.+ +.|+||+++.+..+.+.++|.++.+..   ......++++|.|....   ..
T Consensus         6 ~v~k~G~L~K~~~~~k~Wk~RwfvL~~~~~l~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~   85 (118)
T d1unqa_           6 AIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTVI   85 (118)
T ss_dssp             CEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEEE
T ss_pred             CEEEEEEEEEECCCCCCcEEEEEEEeccceeEEEeeccCccccccccccceEEeecccccccccCCceEEEEecccccee
Confidence            4789999999986  589999999975 688888887777666666664433221   11223356888887432   24


Q ss_pred             cEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         131 PLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       131 ~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .++|+|+|.+++..|+.||+.|+.
T Consensus        86 ~~~f~a~s~~e~~~Wi~ai~~~~~  109 (118)
T d1unqa_          86 ERTFHVETPEEREEWTTAIQTVAD  109 (118)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCHHHHHHHHHHHHHHHH
Confidence            589999999999999999998764

>d1v61a_ b.55.1.1 (A:) Rac/CDC42 GEF 6, alpha-pix {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rac/CDC42 GEF 6, alpha-pix
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=1.5e-12  Score=84.91  Aligned_cols=96  Identities=19%  Similarity=0.363  Sum_probs=78.6

Q ss_pred             CCCcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCccc---ceEEEccCeEEEEccCCCCceeEEEEEeCCCccEE
Q psy2209          59 SGSQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIKA---LLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLV  133 (156)
Q Consensus        59 ~~~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~~---~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  133 (156)
                      ...++.|++.++..  +.|+.|||+|-++.|.|++.......   .+.|+|.++.+...++....++.|.|..+..+.|+
T Consensus        26 G~li~~g~~~~~~~~~~~~k~R~~fLF~~~Ll~~k~~~~~~~~~~k~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~~~~~  105 (132)
T d1v61a_          26 GNVIFMSQVVMQHGACEEKEERYFLLFSSVLIMLSASPRMSGFMYQGKIPIAGMVVNRLDEIEGSDCMFEITGSTVERIV  105 (132)
T ss_dssp             CCCSCEEEEEBCCSSSSCCCEEEEEECSSCEEEEECSSSSSCCEEEEEECTTTCBCSTTCSSSSSCCCEEEECSSSCEEE
T ss_pred             cCEEEEEEEEEEEecCCCcceEEEEEeCCEEEEEEEcCCCceeEEeeecchhhccccccccccCccceEEEeCCCCCEEE
Confidence            34678999998764  58999999999999999986443322   78899999888766666667799999866667899


Q ss_pred             EEcCCHHHHHHHHHHHHHHHh
Q psy2209         134 FGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       134 ~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |+|.|++++++||++|+++..
T Consensus       106 l~a~s~eek~~Wv~~L~~~i~  126 (132)
T d1v61a_         106 VHCNNNQDFQEWMEQLNRLTK  126 (132)
T ss_dssp             ECCCCSHHHHHHHHHHHHHHT
T ss_pred             EEcCCHHHHHHHHHHHHHHHh
Confidence            999999999999999998754

>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 9, Collybistin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=4.4e-09  Score=70.30  Aligned_cols=93  Identities=20%  Similarity=0.219  Sum_probs=71.6

Q ss_pred             CcEEEEEEeccC--CCceEEEEEEeCCeEEEEccCCCcc----cceEEEccCeEEEEccCCCC------ceeEEEEEeC-
Q psy2209          61 SQHSGWLHKKSG--RNWKRYWFVLKDQVMYKYKASEDIK----ALLSIPVLGYELEALNEQDN------FKYVFQLKHQ-  127 (156)
Q Consensus        61 ~~~~G~L~k~~~--k~Wk~r~~vL~~~~L~~yk~~~~~~----~~~~i~L~~~~~~~~~~~~~------~~~~f~i~~~-  127 (156)
                      .+++|+|.+.+.  +.|+.|||+|=++.|.|++......    ..+.++|..+.+....+...      .+++|.|..+ 
T Consensus        27 Li~eG~L~~~~~~~~k~~~r~~fLF~d~Ll~~k~~~~~~~~y~~k~~i~L~~~~v~~~~~~~~~~~~~~~~~~f~i~~~~  106 (162)
T d2dfka2          27 LIYTGEMAWIYQPYGRNQQRVFFLFDHQMVLCKKDLIRRDILYYKGRIDMDKYEVIDIEDGRDDDFNVSMKNAFKLHNKE  106 (162)
T ss_dssp             EEEEEEEEEESSTTCCCEEEEEEEETTEEEEEEECSSCTTCEEEEEEEEGGGEEEEECCSEECSSSCCEESSEEEEEESS
T ss_pred             EEEEEEEEEEEcCCCCceeEEEEEeCCeEEEEEecCCCCCceEEccccchhhceeeecccccccccCccccceEEEEECC
Confidence            568999998764  4799999999999999987543322    37888898888876543322      2478999754 


Q ss_pred             CCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         128 GQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       128 ~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ..+.|.|+|.|+++...||++|+.+.
T Consensus       107 ~~~~~~~~A~s~~eK~~W~~~l~~~~  132 (162)
T d2dfka2         107 TEEVHLFFAKKLEEKIRWLRAFREER  132 (162)
T ss_dssp             SSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCHHHHHHHHHHHHHHH
Confidence            45679999999999999999998753

>d1zc3b1 b.55.1.1 (B:171-279) Exocyst complex protein EXO84 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Exocyst complex protein EXO84
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=6.4e-09  Score=64.94  Aligned_cols=93  Identities=14%  Similarity=0.177  Sum_probs=70.6

Q ss_pred             CcEEEEEEeccCCC---ceEEEEEEeCCeEEEEccCCC----cccceEEEccCeEEEEccCCCCceeEEEEEeCCCccEE
Q psy2209          61 SQHSGWLHKKSGRN---WKRYWFVLKDQVMYKYKASED----IKALLSIPVLGYELEALNEQDNFKYVFQLKHQGQDPLV  133 (156)
Q Consensus        61 ~~~~G~L~k~~~k~---Wk~r~~vL~~~~L~~yk~~~~----~~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~~~~~  133 (156)
                      .+++|.|.+...+.   -+++++.|=++.|.+.+....    ......++|..+.+...++....+++|.|. ...+.|.
T Consensus         4 li~eG~l~~~~~~~~k~~~~~~~fLF~d~Ll~~k~~~~~~~~~~~~~~~~l~~~~v~~~~d~~~~~n~f~i~-~~~~~~~   82 (109)
T d1zc3b1           4 LVYNGDLVEYEADHMAQLQRVHGFLMNDCLLVATWLPQRRGMYRYNALYPLDRLAVVNVKDNPPMKDMFKLL-MFPESRI   82 (109)
T ss_dssp             EEEEEEEEEEETTTCCEEEEEEEEEESSEEEEEEEECCTTSCEEEEEEEETTTCEEEEECCBTTBSSEEEEE-ETTEEEE
T ss_pred             EEEeeeEEEEccCCCCcceeEEEEEecCEEEEEEEcCCcceEEEeeeEEeccceEEEEeecccccceEEEEc-cCCCEEE
Confidence            35789998865543   356677777666666553222    123778999999988877777778999998 4557899


Q ss_pred             EEcCCHHHHHHHHHHHHHHHh
Q psy2209         134 FGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       134 ~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      |+|+|.++...|+++|+.|..
T Consensus        83 ~~a~s~~eK~~W~~~l~~a~~  103 (109)
T d1zc3b1          83 FQAENAKIKREWLEVLEETKR  103 (109)
T ss_dssp             EECSSHHHHHHHHHHHHHHHH
T ss_pred             EEECCHHHHHHHHHHHHHHHH
Confidence            999999999999999998853

>d1maia_ b.55.1.1 (A:) Phospholipase C delta-1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C delta-1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=1.1e-08  Score=64.90  Aligned_cols=91  Identities=12%  Similarity=0.208  Sum_probs=63.5

Q ss_pred             EEE-EEEeccCCCc-eEEEEEEe-CCeEEEEccCCCc--ccceEEEccCeEEEEccCC----------CCceeEEEEEe-
Q psy2209          63 HSG-WLHKKSGRNW-KRYWFVLK-DQVMYKYKASEDI--KALLSIPVLGYELEALNEQ----------DNFKYVFQLKH-  126 (156)
Q Consensus        63 ~~G-~L~k~~~k~W-k~r~~vL~-~~~L~~yk~~~~~--~~~~~i~L~~~~~~~~~~~----------~~~~~~f~i~~-  126 (156)
                      ..| +|.|-..+.| ++|||.|. +..+.+|.+..+.  ...+.|+|..+..+.....          .....+|.|.. 
T Consensus        12 ~~G~~l~K~~~~~~~k~R~f~L~~d~~~i~~~~~~~~~~~~~~~i~i~~I~~V~~G~~s~~~~~~~~~~~~~~~FsIv~~   91 (119)
T d1maia_          12 LKGSQLLKVKSSSWRRERFYKLQEDCKTIWQESRKVMRSPESQLFSIEDIQEVRMGHRTEGLEKFARDIPEDRCFSIVFK   91 (119)
T ss_dssp             HHCEEEEEESSSSCEEEEEEEECTTSSEEEECCCCTTCCTTTTEEEGGGEEEEEESSCSHHHHHHCTTSCGGGEEEEEES
T ss_pred             HcCCeEEEeCCCCCCEEEEEEEcCCCCEEEEeCCCCCCCccceEEEHHHceEEEcCCCCchhhhcccCCCcCceEEEEEc
Confidence            344 6777666667 56999996 4556677654433  3478999988766543211          11237899985 


Q ss_pred             CCCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         127 QGQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       127 ~~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ++.+++.|.|+|.+++..|+.+|+...
T Consensus        92 ~~~r~l~l~a~s~~~~~~Wv~~L~~L~  118 (119)
T d1maia_          92 DQRNTLDLIAPSPADAQHWVQGLRKII  118 (119)
T ss_dssp             SSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEECCHHHHHHHHHHHHHHh
Confidence            445789999999999999999998653

>d1dbha2 b.55.1.1 (A:418-550) Son of sevenless-1 (sos-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Son of sevenless-1 (sos-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.4e-08  Score=65.50  Aligned_cols=91  Identities=14%  Similarity=0.261  Sum_probs=73.6

Q ss_pred             CcEEEEEEeccCCCceEEEEEEeCCeEEEEccCCCcc-----------cceEEEccCeEEEEccCCCCceeEEEEEeCCC
Q psy2209          61 SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDIK-----------ALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ  129 (156)
Q Consensus        61 ~~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~~-----------~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~  129 (156)
                      .+++|.|.+.+++  +.||+.|=++.|.|.+......           -++.++|.++.+....+....+++|.|..+..
T Consensus        27 li~eG~l~~~~~~--k~r~~fLF~d~Li~~k~~~~~~~~~~~~~~~y~~k~~i~l~~~~v~~~~~~~~~~~~f~i~~~~~  104 (133)
T d1dbha2          27 FIMEGTLTRVGAK--HERHIFLFDGLMICCKSNHGQPRLPGASNAEYRLKEKFFMRKVQINDKDDTNEYKHAFEIILKDE  104 (133)
T ss_dssp             EEEEEEEEETTCS--SCEEEEEESSEEEEEEECTTCCCCTTSCCCSEEEEEEEESCSCEEEECCCSSSCCSEEEECCTTS
T ss_pred             EEEEeEEEEecCC--CeEEEEEecCeEEEEEecccccccccCCCccEEEEeeeecccccccccCCCcccccceeEEcCCC
Confidence            5689999988755  6899999888888887433211           15789999999987777766789999986667


Q ss_pred             ccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         130 DPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       130 ~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      +.|.|+|.|+++...|+++|..+.
T Consensus       105 ~~~~l~a~s~~eK~~W~~~l~~~~  128 (133)
T d1dbha2         105 NSVIFSAKSAEEKNNWMAALISLQ  128 (133)
T ss_dssp             CCEEEECSSHHHHHHHHHHHHHHH
T ss_pred             cEEEEEECCHHHHHHHHHHHHHHH
Confidence            789999999999999999998764

>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein TRIO {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Triple functional domain protein TRIO
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9.7e-06  Score=50.84  Aligned_cols=93  Identities=14%  Similarity=0.071  Sum_probs=64.1

Q ss_pred             CCcEEEEEEecc----CCCceEEEEEEeCCeEEEEccCCCc------ccceEEEccCeEEEEccCCCCceeEEEEEe---
Q psy2209          60 GSQHSGWLHKKS----GRNWKRYWFVLKDQVMYKYKASEDI------KALLSIPVLGYELEALNEQDNFKYVFQLKH---  126 (156)
Q Consensus        60 ~~~~~G~L~k~~----~k~Wk~r~~vL~~~~L~~yk~~~~~------~~~~~i~L~~~~~~~~~~~~~~~~~f~i~~---  126 (156)
                      ..++.|.|....    .+..+.|++-|=++.|.|-+.....      .....+++....+....+.  .++.|.|..   
T Consensus        12 ~Ll~~g~l~v~~~~~~~~k~~~R~~FLF~d~Ll~~K~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~i~~~~~   89 (121)
T d1ntya2          12 ELILQESFQVWDPKTLIRKGRERHLFLFEMSLVFSKEVKDSSGRSKYLYKSKLFTSELGVTEHVEG--DPCKFALWVGRT   89 (121)
T ss_dssp             CEEEEEEEEEECSSSSSCCEEEEEEEEESSEEEEEEEEECTTCCEEEEEEEEEEGGGEEEECCCTT--CTTEEEEEESSS
T ss_pred             cEEEEeEEEEEcccccCCCCcEEEEEeeCCeEEEEEEecCCCCCceeEEEeeEEecceEEEEcCCC--CCceEEEEEecC
Confidence            356899998533    2467889988877777776532211      1255677777766544333  346788752   


Q ss_pred             -CCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         127 -QGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       127 -~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                       .....|.|+|.|+++...|+++|+++..
T Consensus        90 ~~~~~~~~l~a~s~~eK~~W~~~I~~~i~  118 (121)
T d1ntya2          90 PTSDNKIVLKASSIENKQDWIKHIREVIQ  118 (121)
T ss_dssp             CCTTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCHHHHHHHHHHHHHHHH
Confidence             3445799999999999999999998753

>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of intersectin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=9.8e-07  Score=57.22  Aligned_cols=91  Identities=13%  Similarity=0.171  Sum_probs=63.1

Q ss_pred             CcEEEEEEeccCCCceEEEEEEeCCeEEEEccCCCc-----------------ccceEEEccCeEEEEccCCCCceeEEE
Q psy2209          61 SQHSGWLHKKSGRNWKRYWFVLKDQVMYKYKASEDI-----------------KALLSIPVLGYELEALNEQDNFKYVFQ  123 (156)
Q Consensus        61 ~~~~G~L~k~~~k~Wk~r~~vL~~~~L~~yk~~~~~-----------------~~~~~i~L~~~~~~~~~~~~~~~~~f~  123 (156)
                      .+++|.|.+....  +.+++.|=++.|.|-+...+.                 .....++|....+....+.....+.|.
T Consensus        25 li~eG~L~k~~~~--k~r~~FLFnD~Ll~tK~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~~~~d~~~~~~~~~  102 (142)
T d1ki1b2          25 FLHSGKLYKAKNN--KELYGFLFNDFLLLTQITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLVKLPTDPSGDEPIFH  102 (142)
T ss_dssp             EEEECCCBCSSSC--CCCEEEEESSEEEEEEEECC-------CCSCSSCCEEEECSSCEEGGGEEEECCSSSCCC---CE
T ss_pred             EEEeeEEEEecCC--CEEEEEEecCEEEEEEeccccceeccccccccCCceeEEEEcccchhhheeeccCCcccceeEEE
Confidence            4689999775433  577888877777775532210                 113457777877776655555557788


Q ss_pred             EEeCCCccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         124 LKHQGQDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       124 i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      +. ..++.|.|+|+|+++...|+++|++|..
T Consensus       103 ~~-~~~~~~~l~a~s~~ek~~W~~~I~~Ai~  132 (142)
T d1ki1b2         103 IS-HIDRVYTLRAESINERTAWVQKIKAASE  132 (142)
T ss_dssp             EE-ETTEEEECBCSSHHHHHHHHHHHHHHHH
T ss_pred             ec-CCCEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence            77 5667899999999999999999999864

>d1xcga2 b.55.1.1 (A:942-1081) Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 11, PDZ-RhoGEF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.1e-05  Score=49.06  Aligned_cols=92  Identities=13%  Similarity=0.097  Sum_probs=60.8

Q ss_pred             CcEEEEEEec-cCCCceEEEEEEeCCeEEEEccCCCcc------------------cceEEEccCeEEEEccCCCCceeE
Q psy2209          61 SQHSGWLHKK-SGRNWKRYWFVLKDQVMYKYKASEDIK------------------ALLSIPVLGYELEALNEQDNFKYV  121 (156)
Q Consensus        61 ~~~~G~L~k~-~~k~Wk~r~~vL~~~~L~~yk~~~~~~------------------~~~~i~L~~~~~~~~~~~~~~~~~  121 (156)
                      -+++|.|..+ +.+..+.|++.|=++.|.|-+......                  ....+.+....+.....   .++.
T Consensus        25 Li~eG~L~~k~~~~k~k~r~~FLF~D~Ll~tk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~  101 (140)
T d1xcga2          25 MIHEGPLTWRISKDKTLDLHVLLLEDLLVLLQKQDEKLLLKCHSKTAVGSSDSKQTFSPVLKLNAVLIRSVAT---DKRA  101 (140)
T ss_dssp             EEEEEEEEECCSSSCCCEEEEEEESSEEEEEEECSSCEECCC-------------CCCSEEEGGGEEEEECSS---CSSE
T ss_pred             EEEEeeEEEEecCCCceEEEEEEecCeEEEEEecccceeeccccccccccccceeeecceEecceEEEecCCC---CCCe
Confidence            4689999744 446778899999888888866533211                  12234444433333322   2356


Q ss_pred             EEEEeC----CCccEEEEcCCHHHHHHHHHHHHHHHhc
Q psy2209         122 FQLKHQ----GQDPLVFGADNEQSYERWMKAMREATTL  155 (156)
Q Consensus       122 f~i~~~----~~~~~~~~a~s~~~~~~Wi~al~~a~~~  155 (156)
                      |.+...    ....|.|+|.|+++...|+++|++|..-
T Consensus       102 f~li~~~~~~~~~~~~l~A~s~~eK~~Wi~~i~~aI~n  139 (140)
T d1xcga2         102 FFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN  139 (140)
T ss_dssp             EEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCceEEEEEcCCHHHHHHHHHHHHHHHHc
Confidence            766532    3457999999999999999999998753

>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Rho guanine nucleotide exchange factor 12
species: Human (Homo sapiens), gamma isoform [TaxId: 9606]

Probab=98.19  E-value=2.9e-05  Score=48.17  Aligned_cols=91  Identities=12%  Similarity=0.111  Sum_probs=59.4

Q ss_pred             cEEEEEEeccC-CCceEEEEEEeCCeEEEEccCCCc------------------ccceEEEccCeEEEEccCCCCceeEE
Q psy2209          62 QHSGWLHKKSG-RNWKRYWFVLKDQVMYKYKASEDI------------------KALLSIPVLGYELEALNEQDNFKYVF  122 (156)
Q Consensus        62 ~~~G~L~k~~~-k~Wk~r~~vL~~~~L~~yk~~~~~------------------~~~~~i~L~~~~~~~~~~~~~~~~~f  122 (156)
                      +++|-|..+.+ +.-+.|++.|=++.|.+-+...+.                  .-...|.+....+.....  +.+..|
T Consensus         2 i~eG~L~~~~~~~k~~er~vFLF~d~Ll~~k~~~~k~~~~~~~~~~~~~~~~~~~~~~~i~l~~l~v~e~~~--d~~~~f   79 (114)
T d1txda2           2 IHEGPLVWKVNRDKTIDLYTLLLEDILVLLQKQDDRLVLRCHSKILASTADSKHTFSPVIKLSTVLVRQVAT--DNKALF   79 (114)
T ss_dssp             EEEEEEEEESSSSCBCCEEEEEESSEEEEEEEETTEEECCC-------------CCCSEEEGGGEEEEECCC---CCEEE
T ss_pred             ceeeeEEEEecCCCceEEEEEEecCeEEEEEecccccccccccccccccccceeeecCcEEcccEEEEEcCC--CCCCEE
Confidence            47899975433 344567777766666665532221                  113456677766655432  234678


Q ss_pred             EEEeCC--CccEEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         123 QLKHQG--QDPLVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       123 ~i~~~~--~~~~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .|...+  ...|.|+|.|.++.+.|+++|++++.
T Consensus        80 li~~~~~~~~~y~l~A~s~~eK~~W~~~I~~~~~  113 (114)
T d1txda2          80 VISMSDNGAQIYELVAQTVSEKTVWQDLICRMAA  113 (114)
T ss_dssp             EEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCceEEEEEcCCHHHHHHHHHHHHHHhc
Confidence            887543  24799999999999999999998864

>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Dbl's big sister, Dbs
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.88  E-value=0.00027  Score=45.60  Aligned_cols=92  Identities=12%  Similarity=0.124  Sum_probs=60.0

Q ss_pred             CcEEEEEEeccC-------------CCceEEEEEEeCCeEEEEccCCCc----------ccceEEEccCeEEEEccCCCC
Q psy2209          61 SQHSGWLHKKSG-------------RNWKRYWFVLKDQVMYKYKASEDI----------KALLSIPVLGYELEALNEQDN  117 (156)
Q Consensus        61 ~~~~G~L~k~~~-------------k~Wk~r~~vL~~~~L~~yk~~~~~----------~~~~~i~L~~~~~~~~~~~~~  117 (156)
                      .+..|.+....+             +.-+.|+|-|=+..|.|-+.....          .-++.+++....+....+...
T Consensus        13 Ll~qg~~~v~~~~~~~~~~~~~~~~~K~~~R~~FLF~~~Li~cK~~~~~~~~~~~~~~y~~k~~~~~~~~~v~~~~~~~~   92 (147)
T d1kz7a2          13 LLMQGSFSVWTDHKKGHTKVKELARFKPMQRHLFLHEKAVLFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENVKGDT   92 (147)
T ss_dssp             EEEEEEEEEEECCCCC-----CCCSSSCEEEEEEEESSEEEEEEEECCCCSSCCCSCEEEEEEEEEGGGEEEECCBTTBT
T ss_pred             EEEeeeEEEEecCccchhhhhhhhccCCceEEEEEecCcEEEEEecccCCcccccCceEEEeeEEecCCceeEecCCCCc
Confidence            457888865321             134678888877777776642211          115677777776655444333


Q ss_pred             ceeEEEEEeCCCccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         118 FKYVFQLKHQGQDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       118 ~~~~f~i~~~~~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      ..+.|.+. .....|.|+|.|+++...|+.+|+++.
T Consensus        93 ~~f~~~~~-~~~~~~~l~a~s~eeK~~W~~~I~~~l  127 (147)
T d1kz7a2          93 KKFEIWYN-AREEVYIIQAPTPEIKAAWVNAIRKVL  127 (147)
T ss_dssp             TEEEEEET-TTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeC-CCCcEEEEEeCCHHHHHHHHHHHHHHH
Confidence            33444443 455689999999999999999999754

>d1fhoa_ b.55.1.1 (A:) UNC-89 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: UNC-89
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.87  E-value=7.2e-05  Score=46.82  Aligned_cols=91  Identities=12%  Similarity=0.059  Sum_probs=57.8

Q ss_pred             CCCcEEEEEEeccCC-CceEEEEEEeCCeEEEEccCCC-cc----cceEEEccCeEEEEccCCCCceeEEEEEeCCC--c
Q psy2209          59 SGSQHSGWLHKKSGR-NWKRYWFVLKDQVMYKYKASED-IK----ALLSIPVLGYELEALNEQDNFKYVFQLKHQGQ--D  130 (156)
Q Consensus        59 ~~~~~~G~L~k~~~k-~Wk~r~~vL~~~~L~~yk~~~~-~~----~~~~i~L~~~~~~~~~~~~~~~~~f~i~~~~~--~  130 (156)
                      +..+..|++....++ .-+.|++-|=+..|.|.+.... ..    -++.|+|.+..+......   +..|.|...+.  .
T Consensus         8 G~ll~~~~f~v~~~~~k~k~R~vFLF~~~ll~~K~~~~~~~~~y~~K~~i~l~~~~v~e~~gd---~~~F~i~~~~~~~~   84 (119)
T d1fhoa_           8 GRIIRHDAFQVWEGDEPPKLRYVFLFRNKIMFTEQDASTSPPSYTHYSSIRLDKYNIRQHTTD---EDTIVLQPQEPGLP   84 (119)
T ss_dssp             CCSSEEEEEEECSTTCSCEEEEEEEETTEEEEEEECCSSSSCCCSSCCEEESSSCEEEEECTT---CCEEEEECCSTTCC
T ss_pred             CceEEEeEEEEEeCCCCceEEEEEEEcCeEEEEEeccCCCCceEEEecEEECCceEEEEcCCC---CcEEEEEeCCCCCC
Confidence            346678888776542 3345555555555555553222 22    288999999888765432   24777763322  1


Q ss_pred             ----cEEEEcCCHHHHHHHHHHHHHH
Q psy2209         131 ----PLVFGADNEQSYERWMKAMREA  152 (156)
Q Consensus       131 ----~~~~~a~s~~~~~~Wi~al~~a  152 (156)
                          .+.++|.++++...|+.+|+++
T Consensus        85 ~~~~~~~~~a~s~~~K~~Wv~~I~e~  110 (119)
T d1fhoa_          85 SFRIKPKDFETSEYVRKAWLRDIAEE  110 (119)
T ss_dssp             CBCCCCCSSSSCSHHHHHHHHHHHTC
T ss_pred             cceEEEEEecCCHHHHHHHHHHHHHH
Confidence                4556789999999999999754

>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Alpha-1-syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=0.0013  Score=39.10  Aligned_cols=90  Identities=13%  Similarity=0.224  Sum_probs=68.2

Q ss_pred             CcEEEEEEecc-------CCCceEEEEEEeCCeEEEEccCCCcccceEEEccCeEEEEcc-CCCCceeEEEEEeCCCc-c
Q psy2209          61 SQHSGWLHKKS-------GRNWKRYWFVLKDQVMYKYKASEDIKALLSIPVLGYELEALN-EQDNFKYVFQLKHQGQD-P  131 (156)
Q Consensus        61 ~~~~G~L~k~~-------~k~Wk~r~~vL~~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~-~~~~~~~~f~i~~~~~~-~  131 (156)
                      ..+.|.|..+-       +..|.+....|.+..|...-.    .....|+|.-|-+.... ..+.-...|+|..++++ .
T Consensus         6 a~rsGlLE~~~~~~~~~~~~rW~rVl~~L~ed~Lt~s~~----~d~k~IPLKmcyvtR~~~~~D~EnR~lElhSpDG~~t   81 (105)
T d2adza1           6 APRTGLLELRCGAGSGAGGERWQRVLLSLAEDALTVSPL----SEAKHVSLKMAYVSRRCTPTDPEPRYLEICAADGQDA   81 (105)
T ss_dssp             CCEEEEEEECCCCSSSSSCCCCEEEEEEEETTEEEEESS----CSCEEEETTTCEEEEECCSSCCSSCEEEEEETTTTEE
T ss_pred             CCccceEEEeeccCCCccccceeeeeeecccceEEeecc----cccceeeeeeEEeeecccCCCCcccEEEEECCCCCce
Confidence            35899999873       348999999999999987642    23678999777665522 22223469999877664 7


Q ss_pred             EEEEcCCHHHHHHHHHHHHHHHh
Q psy2209         132 LVFGADNEQSYERWMKAMREATT  154 (156)
Q Consensus       132 ~~~~a~s~~~~~~Wi~al~~a~~  154 (156)
                      .+|.|.+..+++.|.++|+....
T Consensus        82 ~iLR~kD~a~A~~WF~Aihs~i~  104 (105)
T d2adza1          82 VFLRAKDEASARSWAGAIQAQIG  104 (105)
T ss_dssp             EEECCSSHHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCHHHHHHHHHHHHHhhc
Confidence            78999999999999999987653

>d2zkmx3 b.55.1.1 (X:11-141) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.14  Score=31.75  Aligned_cols=78  Identities=5%  Similarity=-0.013  Sum_probs=50.1

Q ss_pred             CceEEEEEEe-CCeEEEEccCCCcccceEEEccCeEEEEccCC---C--------------C---ceeEEEEEeCC----
Q psy2209          74 NWKRYWFVLK-DQVMYKYKASEDIKALLSIPVLGYELEALNEQ---D--------------N---FKYVFQLKHQG----  128 (156)
Q Consensus        74 ~Wk~r~~vL~-~~~L~~yk~~~~~~~~~~i~L~~~~~~~~~~~---~--------------~---~~~~f~i~~~~----  128 (156)
                      .-+.+.|-|. ++...||++++  .....|+|....-+.....   .              .   -..+|.|.+..    
T Consensus        22 ~~~~~~frlD~~g~~L~W~~~~--k~~~~l~i~~I~evR~G~~~~~~k~~kl~~~~~~~~~~~~~e~~~ftIvyg~~~v~   99 (131)
T d2zkmx3          22 VASPVILRVDPKGYYLYWTYQS--KEMEFLDITSIRDTRFGKFAKMPKSQKLRDVFNMDFPDNSFLLKTLTVVSGPDMVD   99 (131)
T ss_dssp             CEEEEEEEECTTSCEEEEEETT--SCEEEEEGGGEEEEEEGGGSCCCCSHHHHHHTTCSSTTCCGGGTEEEEEECSSSSS
T ss_pred             ccceEEEEECCCCCEEEEECCC--CceeEEEecceeeEEeccccCCccHHHHhhhhhccCcCCCccccEEEEEECCCccc
Confidence            4466777774 34444444433  2356788877665553211   0              0   12599998743    


Q ss_pred             CccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         129 QDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       129 ~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                      -+.+.|.|.+.+++..|+..|+..+
T Consensus       100 l~~l~lVA~s~~~a~~W~~gL~~L~  124 (131)
T d2zkmx3         100 LTFHNFVSYKENVGKAWAEDVLALV  124 (131)
T ss_dssp             CEEEEEEESSSSHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHHHH
Confidence            2567899999999999999998654

>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Pleckstrin-homology domain (PH domain)
domain: GEF of TIAM1 (T-Lymphoma invasion and metastasis inducing protein 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.06  E-value=0.38  Score=30.41  Aligned_cols=80  Identities=19%  Similarity=0.231  Sum_probs=57.1

Q ss_pred             CceEEEEEEeCCeEEEEccCCCcc----------------c---ceEEEccCeEEEEccCC-CCceeEEEEEeCC-----
Q psy2209          74 NWKRYWFVLKDQVMYKYKASEDIK----------------A---LLSIPVLGYELEALNEQ-DNFKYVFQLKHQG-----  128 (156)
Q Consensus        74 ~Wk~r~~vL~~~~L~~yk~~~~~~----------------~---~~~i~L~~~~~~~~~~~-~~~~~~f~i~~~~-----  128 (156)
                      .=.---||++...+..|+.....+                +   .-.|++....+...... ....+.+.|.+..     
T Consensus        49 ~pel~~FVFK~AVV~vcke~sk~KkKl~~~~~~~~~~e~d~~rFr~mIP~~alQVR~~~~~~~es~~vwEiiH~kSe~eg  128 (162)
T d1foea2          49 EPELAAFVFKTAVVLVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPTEALQVRALPSADAEANAVCEIVHVKSESEG  128 (162)
T ss_dssp             SCEEEEEEETTEEEEEECCCCCSCCSSCCCTTTTCSSCSCSCCCEEEEEGGGEEEECCCCTTTTSCCEEEEEECCBTGGG
T ss_pred             CCcEEEEEecceEEEEEcccchhhhhccCccccccccccCceeEEEEeeeeeeEeecccccCCCcceEEEEEeecccccC
Confidence            334455899998888888642211                1   34778877777654322 2356899999853     


Q ss_pred             --CccEEEEcCCHHHHHHHHHHHHHHH
Q psy2209         129 --QDPLVFGADNEQSYERWMKAMREAT  153 (156)
Q Consensus       129 --~~~~~~~a~s~~~~~~Wi~al~~a~  153 (156)
                        +++|.|++.+.+..+.-+.+|++..
T Consensus       129 RpE~vfqlc~St~E~K~~flK~Ir~il  155 (162)
T d1foea2         129 RPERVFHLCCSSPESRKDFLKSVHSIL  155 (162)
T ss_dssp             BCCEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred             CcceEEEEecCCHHHHHHHHHHHHHHH
Confidence              5789999999999999999998754