Psyllid ID: psy221

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-----
Protein Sequence
MNTFLQRCMLPRLAINSRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYISGDAVRCYECSSAQDPKGEDNCGAYSKFHKERHISVECNTEESHTPGSFCMKITQQGPRGFI
Secondary Structure (PSIPRED)
cHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHHccccccEEEEccccHHHHHccccccccccccEEEccEEccHHHHHHHHHHcccHHHHHHHcHHHHHHHHHHHHcccccEEEEEcccccccccccccccHHHHHHHccccEEEcccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccccccccccccHHHHHHHHHHHHcccEEEEEcccccccccccHHHHHHHHHHcccccEEEEEcccHHHHHcHHHHcccccccEEEEEcEEEcHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHccccEEEEEcccccccccccccccccHcccccEEEEEEcccccccccccEEEEccccccccc
Coil and Loop (DISEMBL)
mntflqrcmlprlainsrfhnawrtpystdVQKSIDEMVKKSKVVVFMkgvpeaprcgfsNAVVQILRmhdvpydshdvlkdesirngikeytswptipqvfingefvgGCDILLKLHQSGELVEQLEKGDQKRKQFILINyisgdavrcyecssaqdpkgedncgayskfhkerhisvecnteeshtpgsfcmkitqqgprgfi
Flexible Loop (DISEMBL)
mntflqrcMLPRlainsrfhnawrtpySTDVQKSIDEMVKKSKVVVFMkgvpeaprcgFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQlekgdqkrKQFILINYISGDAVRCYECSSAQDPKGEDNCGAYSKFHKERHISVEcnteeshtpgsfcmkitqqgprgfi
Low Complexity Region (SEG)
MNTFLQRCMLPRLAINSRFHNAWRTPYSTDVQKSIDEMvkkskvvvfmkgvPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYISGDAVRCYECSSAQDPKGEDNCGAYSKFHKERHISVECNTEESHTPGSFCMKITQQGPRGFI
Disordered region (IsUnstruct)
***FLQRCMLPRLAINSRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYISGDAVRCYECS***************************************************
Disordered Region (DISOPRED)
**********************************IDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQ***************YISGDAVRCYECSSAQDPKGEDNCGAYSKFHKERHISVECNTEESHTPGSFCMKITQQGP****
Disordered Region (DISEMBL)
MNTFLQRCMLPRLAINSRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYISGDAVRCYECSSAQDPKGEDNCGAYSKFHKERHISVECNTEESHTPGSFCMKIT********
Disordered Region (DISPRO)
*************************PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYISGDAVRCYECSSAQDPK*EDNCGAYSKFHKERHISVECNTEESHTPGSFCMKITQQGP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNTFLQRCMLPRLAINSRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYISGDAVRCYECSSAQDPKGEDNCGAYSKFHKERHISVECNTEESHTPGSFCMKITQQGPRGFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	205	2.2.26 [Sep-21-2011]
Q6PBM1	155	Glutaredoxin-related prot	yes	N/A	0.517	0.683	0.672	7e-37
Q80Y14	152	Glutaredoxin-related prot	yes	N/A	0.517	0.697	0.616	2e-34
Q86SX6	157	Glutaredoxin-related prot	yes	N/A	0.473	0.617	0.653	3e-34
P73056	107	Uncharacterized monothiol	N/A	N/A	0.482	0.925	0.585	1e-30
Q851Y7	168	Monothiol glutaredoxin-S7	yes	N/A	0.492	0.601	0.544	4e-29
Q1XDA3	107	Uncharacterized monothiol	N/A	N/A	0.487	0.934	0.52	1e-27
Q84Y95	173	Monothiol glutaredoxin-S1	yes	N/A	0.487	0.578	0.49	2e-26
Q0JM76	185	Monothiol glutaredoxin-S4	no	N/A	0.604	0.670	0.426	3e-26
Q8LBK6	169	Monothiol glutaredoxin-S1	no	N/A	0.502	0.609	0.480	3e-26
Q6YFE4	143	Monothiol glutaredoxin-5,	N/A	N/A	0.507	0.727	0.448	2e-25

>sp|Q6PBM1|GLRX5_DANRE Glutaredoxin-related protein 5, mitochondrial OS=Danio rerio GN=glrx5 PE=2 SV=1

 Score =  153 bits (387), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/107 (67%), Positives = 88/107 (82%), Gaps = 1/107 (0%)

Query: 24  RTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVP-YDSHDVLKD 82
           R   S+  QK+++EMVKK KVVVFMKG P  P CGFSNAVVQILRMH V  Y S++VL D
Sbjct: 34  RLMCSSAGQKNLEEMVKKDKVVVFMKGTPAQPMCGFSNAVVQILRMHGVDNYASYNVLDD 93

Query: 83  ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           + +R GIK +++WPTIPQVF NGEFVGGCDILL++HQSG+LVE+L+K
Sbjct: 94  QDVRQGIKTFSNWPTIPQVFFNGEFVGGCDILLQMHQSGDLVEELQK 140

Monothiol glutaredoxin involved in iron-sulfur biogenesis. Required for normal iron homeostasis. Required for normal hemoglobin biosynthesis.
Danio rerio (taxid: 7955)

>sp|Q80Y14|GLRX5_MOUSE Glutaredoxin-related protein 5, mitochondrial OS=Mus musculus GN=Glrx5 PE=2 SV=2

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/107 (61%), Positives = 87/107 (81%), Gaps = 1/107 (0%)

Query: 24  RTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV-PYDSHDVLKD 82
           R   S    + +D +VKK KVVVF+KG PE P+CGFSNAVVQILR+H V  Y +++VL D
Sbjct: 30  RAASSGGQAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDD 89

Query: 83  ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
             +R GIK+Y++WPTIPQV++NGEFVGGCDILL++HQ+G+LVE+L+K
Sbjct: 90  PELRQGIKDYSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKK 136

Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters. Required for normal iron homeostasis. Required for normal regulation of hemoglobin synthesis by the iron-sulfur protein ACO1. May protect cells against apoptosis due to reactive oxygen species and oxidative stress.

Mus musculus (taxid: 10090)

>sp|Q86SX6|GLRX5_HUMAN Glutaredoxin-related protein 5, mitochondrial OS=Homo sapiens GN=GLRX5 PE=1 SV=2

 Score =  144 bits (364), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 64/98 (65%), Positives = 85/98 (86%), Gaps = 1/98 (1%)

Query: 33  KSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV-PYDSHDVLKDESIRNGIKE 91
           + +D +VKK KVVVF+KG PE P+CGFSNAVVQILR+H V  Y +++VL D  +R GIK+
Sbjct: 43  EQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKD 102

Query: 92  YTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           Y++WPTIPQV++NGEFVGGCDILL++HQ+G+LVE+L+K
Sbjct: 103 YSNWPTIPQVYLNGEFVGGCDILLQMHQNGDLVEELKK 140

Monothiol glutaredoxin involved in the biogenesis of iron-sulfur clusters. Required for normal iron homeostasis. Required for normal regulation of hemoglobin synthesis by the iron-sulfur protein ACO1.

Homo sapiens (taxid: 9606)

>sp|P73056|YC64L_SYNY3 Uncharacterized monothiol glutaredoxin ycf64-like OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr1846 PE=3 SV=1

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 78/99 (78%)

Query: 30  DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGI 89
           + +  ID++V  +KV+VFMKG    P+CGFSN VVQIL M  +P+++ DVL D  IR GI
Sbjct: 4   ETKARIDQLVTANKVMVFMKGTKLMPQCGFSNNVVQILNMLGIPFETLDVLADAEIRQGI 63

Query: 90  KEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLE 128
           KEY++WPTIPQV++NGEFVGG DI+++L+Q+GEL E LE
Sbjct: 64  KEYSNWPTIPQVYVNGEFVGGSDIMIELYQNGELQEMLE 102

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

>sp|Q851Y7|GRXS7_ORYSJ Monothiol glutaredoxin-S7, chloroplastic OS=Oryza sativa subsp. japonica GN=GRXS7 PE=2 SV=1

 Score =  127 bits (320), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/101 (54%), Positives = 80/101 (79%)

Query: 30  DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGI 89
           +++ ++D++V   KVV+FMKG  + P+CGFS+ VVQILR  DVP+++ DVL +E++R G+
Sbjct: 65  EMRATLDKVVGSHKVVLFMKGTKDFPQCGFSHTVVQILRSLDVPFETLDVLANEALRQGL 124

Query: 90  KEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKG 130
           KEY+SWPT PQ++I+GEF GGCDI +  ++SGEL E LEK 
Sbjct: 125 KEYSSWPTFPQLYIDGEFFGGCDITVDAYKSGELQETLEKA 165

May only reduce GSH-thiol disulfides, but not protein disulfides.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q1XDA3|YCF64_PORYE Uncharacterized monothiol glutaredoxin ycf64 OS=Porphyra yezoensis GN=ycf64 PE=3 SV=1

 Score =  123 bits (308), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 75/100 (75%)

Query: 29  TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG 88
           T+ +K ID+++   K+V+FMKG    P CGFSN   QIL   ++ Y ++D+L+DE+IR  
Sbjct: 3   TETKKRIDQLLNDHKIVLFMKGNKTMPMCGFSNTATQILNTLNIKYFTYDILEDENIRKA 62

Query: 89  IKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLE 128
           IKEY+SWPTIPQ++IN EF+GG DI+L+L ++GEL  Q+E
Sbjct: 63  IKEYSSWPTIPQLYINREFIGGADIMLELFETGELQAQVE 102

Porphyra yezoensis (taxid: 2788)

>sp|Q84Y95|GRS14_ARATH Monothiol glutaredoxin-S14, chloroplastic OS=Arabidopsis thaliana GN=GRXS14 PE=1 SV=2

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 77/100 (77%)

Query: 31  VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIK 90
           ++ +++++V   KVV+FMKG  + P CGFSN VVQIL+  +VP++  ++L++E +R G+K
Sbjct: 71  LKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLK 130

Query: 91  EYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKG 130
           EY++WPT PQ++I GEF GGCDI L+  ++GEL E++EK 
Sbjct: 131 EYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEKA 170

May only reduce GSH-thiol disulfides, but not protein disulfides (Potential). May protect cells against protein oxidative damage. May regulate CAX cation transporters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JM76|GRXS4_ORYSJ Monothiol glutaredoxin-S4, mitochondrial OS=Oryza sativa subsp. japonica GN=GRXS4 PE=2 SV=1

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/129 (42%), Positives = 85/129 (65%), Gaps = 5/129 (3%)

Query: 12  RLAINSRFHNAWRTPYSTDVQKSIDEMV----KKSKVVVFMKGVPEAPRCGFSNAVVQIL 67
           R+A +   H  ++ P +     S D++V    K++ V+++MKG P+APRCGFS   V++L
Sbjct: 54  RVAADPDTHQDFQ-PTTKSSNMSFDDIVSQDIKENPVLIYMKGYPDAPRCGFSALAVRVL 112

Query: 68  RMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQL 127
           + +DVP  + D+L D  ++  +K +T+WPT PQ+FI GEFVGG DI+L +HQ G+L + L
Sbjct: 113 KQYDVPISARDILGDLKLKESVKAHTNWPTFPQIFIKGEFVGGSDIILDMHQKGQLKDVL 172

Query: 128 EKGDQKRKQ 136
               QKR+Q
Sbjct: 173 GDIAQKREQ 181

May only reduce GSH-thiol disulfides, but not protein disulfides.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LBK6|GRS15_ARATH Monothiol glutaredoxin-S15, mitochondrial OS=Arabidopsis thaliana GN=GRXS15 PE=1 SV=2

 Score =  118 bits (295), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/104 (48%), Positives = 79/104 (75%), Gaps = 1/104 (0%)

Query: 26  PYSTDVQKSIDEM-VKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES 84
           P STD  K I E  VK + V+++MKGVPE+P+CGFS+  V++L+ ++VP  S ++L+D+ 
Sbjct: 59  PDSTDSLKDIVENDVKDNPVMIYMKGVPESPQCGFSSLAVRVLQQYNVPISSRNILEDQE 118

Query: 85  IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLE 128
           ++N +K ++ WPT PQ+FI GEF+GG DI+L +H+ GEL ++L+
Sbjct: 119 LKNAVKSFSHWPTFPQIFIKGEFIGGSDIILNMHKEGELEQKLK 162

May only reduce GSH-thiol disulfides, but not protein disulfides.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6YFE4|GLRX5_LACKL Monothiol glutaredoxin-5, mitochondrial OS=Lachancea kluyveri GN=GRX5 PE=3 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 77/107 (71%), Gaps = 3/107 (2%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV---PYDSHDVLKDES 84
           ST+ +++I+  ++ + VV+FMKG PE P+CGFS A + +L    V    + +++VL+D  
Sbjct: 29  STETKQAIESAIESAPVVLFMKGTPEFPQCGFSKATINMLGQQGVDPMKFAAYNVLEDAE 88

Query: 85  IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGD 131
           +R G+KE++ WPTIPQ+++N EFVGGCDI++ + Q+GEL + LE  D
Sbjct: 89  LREGVKEFSEWPTIPQLYVNKEFVGGCDIVMNMAQTGELAKLLEDAD 135

Monothiol glutaredoxin involved in iron-sulfur biogenesis.

Lachancea kluyveri (taxid: 4934)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
389609465	146	glutaredoxin [Papilio xuthus]	0.619	0.869	0.651	1e-43
195457355	166	GK18554 [Drosophila willistoni] gi|19417	0.580	0.716	0.616	6e-40
195133576	163	GI16412 [Drosophila mojavensis] gi|19390	0.585	0.736	0.619	2e-39
156546246	142	PREDICTED: glutaredoxin-related protein	0.473	0.683	0.742	6e-39
383849979	134	PREDICTED: glutaredoxin-related protein	0.492	0.753	0.745	6e-39
24642023	159	CG14407 [Drosophila melanogaster] gi|195	0.473	0.610	0.721	1e-38
350406647	134	PREDICTED: glutaredoxin-related protein	0.536	0.820	0.669	1e-38
340721707	163	PREDICTED: glutaredoxin-related protein	0.619	0.779	0.538	1e-38
195354579	158	GM12034 [Drosophila sechellia] gi|194129	0.551	0.715	0.637	2e-38
195397435	163	GJ17033 [Drosophila virilis] gi|19414710	0.585	0.736	0.595	2e-38

>gi|389609465|dbj|BAM18344.1| glutaredoxin [Papilio xuthus]

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 84/129 (65%), Positives = 106/129 (82%), Gaps = 2/129 (1%)

Query: 1   MNTFLQRCMLPRLAINSRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFS 60
           MNT +++ + P    NS    + RT    ++ + ID++VK +KVVVFMKGVP+APRCGFS
Sbjct: 1   MNTLIRKGIRPLF--NSTIRASCRTFADVNINEKIDKIVKDNKVVVFMKGVPDAPRCGFS 58

Query: 61  NAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQS 120
           NAVVQI+RMH VPY SHDVL DE++R GIKEY++WPTIPQVFINGEFVGGCDI+L++HQS
Sbjct: 59  NAVVQIMRMHAVPYVSHDVLSDENLRQGIKEYSNWPTIPQVFINGEFVGGCDIMLQMHQS 118

Query: 121 GELVEQLEK 129
           GELVE+L+K
Sbjct: 119 GELVEELKK 127

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195457355|ref|XP_002075537.1| GK18554 [Drosophila willistoni] gi|194171622|gb|EDW86523.1| GK18554 [Drosophila willistoni]

 Score =  169 bits (428), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 101/120 (84%), Gaps = 1/120 (0%)

Query: 10  LPRLAINSRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRM 69
           L   A  +R+++A   P + D + ++D++V+ +KVVVFMKG PE PRCGFSNAVVQI+RM
Sbjct: 27  LAAAATTNRWYSADNAPAAVD-KATLDKLVRTNKVVVFMKGNPEQPRCGFSNAVVQIMRM 85

Query: 70  HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           H V YD+HDVL++E++R G+K++T WPTIPQVFINGEFVGGCDILL++HQSG+L+E+L+K
Sbjct: 86  HGVQYDAHDVLQNEALRQGVKDFTDWPTIPQVFINGEFVGGCDILLQMHQSGDLIEELKK 145

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195133576|ref|XP_002011215.1| GI16412 [Drosophila mojavensis] gi|193907190|gb|EDW06057.1| GI16412 [Drosophila mojavensis]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 101/121 (83%), Gaps = 1/121 (0%)

Query: 10  LPRLAINSRFHNAWRTPYSTDVQK-SIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILR 68
           +P L  + R+++A        V K ++D++V+ +KVVVFMKG P+APRCGFSNAVVQI+R
Sbjct: 24  MPALVASPRWYSADAAAPPAAVDKETLDKLVRTNKVVVFMKGNPQAPRCGFSNAVVQIMR 83

Query: 69  MHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLE 128
           MH V YD+HDVL++E++R GIKEYT WPTIPQVFINGEFVGGCDI++++HQSG+L+E+L+
Sbjct: 84  MHGVQYDAHDVLQNEALRQGIKEYTDWPTIPQVFINGEFVGGCDIMMQMHQSGDLIEELK 143

Query: 129 K 129
           K
Sbjct: 144 K 144

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156546246|ref|XP_001605234.1| PREDICTED: glutaredoxin-related protein 5, mitochondrial-like [Nasonia vitripennis]

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 91/97 (93%)

Query: 33  KSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEY 92
           + I ++VKK+KVVVFMKGVPE PRCGFSNAVVQI+RMH V YD+HDVLKDE++R GIK++
Sbjct: 21  EEIGQLVKKNKVVVFMKGVPEEPRCGFSNAVVQIMRMHGVQYDAHDVLKDENLRQGIKDF 80

Query: 93  TSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           ++WPTIPQVFINGEFVGGCDI+L++HQ+GEL+E+L+K
Sbjct: 81  SNWPTIPQVFINGEFVGGCDIVLQMHQNGELIEELKK 117

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849979|ref|XP_003700609.1| PREDICTED: glutaredoxin-related protein 5, mitochondrial-like [Megachile rotundata]

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN 87
           ST+V K I  +VKK+KVVVFMKGVP++P+CGFSNAVVQILRMHDV YD+HDVL+DE +R 
Sbjct: 14  STNVDK-IANLVKKNKVVVFMKGVPDSPKCGFSNAVVQILRMHDVKYDAHDVLEDEQLRQ 72

Query: 88  GIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           GIK++++WPTIPQVFINGEFVGGCDILL++H++GELVE+L+K
Sbjct: 73  GIKDFSNWPTIPQVFINGEFVGGCDILLEMHKNGELVEELKK 114

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24642023|ref|NP_572974.1| CG14407 [Drosophila melanogaster] gi|19527631|gb|AAL89930.1| RH03087p [Drosophila melanogaster] gi|22832241|gb|AAF48392.2| CG14407 [Drosophila melanogaster] gi|220949162|gb|ACL87124.1| CG14407-PA [synthetic construct]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 90/97 (92%)

Query: 34  SIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT 93
           ++D++V+ +KVVVFMKG P+APRCGFSNAVVQI+RMH V YD+HDVL++ES+R G+K+YT
Sbjct: 43  TMDKLVRTNKVVVFMKGNPQAPRCGFSNAVVQIMRMHGVQYDAHDVLQNESLRQGVKDYT 102

Query: 94  SWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKG 130
            WPTIPQVFINGEFVGGCDILL++HQSG+L+E+L+K 
Sbjct: 103 DWPTIPQVFINGEFVGGCDILLQMHQSGDLIEELKKA 139

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406647|ref|XP_003487837.1| PREDICTED: glutaredoxin-related protein 5, mitochondrial-like [Bombus impatiens]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 99/112 (88%), Gaps = 2/112 (1%)

Query: 18  RFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH 77
           R +N+ R+ +ST   K I  +VKK+KVVVFMKG+P++P+CGFSNAVVQIL+MHDV YD+H
Sbjct: 5   RLYNSIRS-FSTTADK-IANLVKKNKVVVFMKGIPDSPKCGFSNAVVQILKMHDVKYDAH 62

Query: 78  DVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           DVL+DE +R GIK++++WPTIPQVFINGEFVGGCDILL++H++GELV +L+K
Sbjct: 63  DVLEDELLRQGIKDFSNWPTIPQVFINGEFVGGCDILLEMHRNGELVAELKK 114

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340721707|ref|XP_003399257.1| PREDICTED: glutaredoxin-related protein 5, mitochondrial-like [Bombus terrestris]

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 105/143 (73%), Gaps = 16/143 (11%)

Query: 1   MNTFLQRCMLPRLAINSRFHNAWRTPYSTDV--------------QKSIDEMVKKSKVVV 46
           +N  + R  L  +A++ +    WR P+  +V                 I  +VKK+KVVV
Sbjct: 3   INETIYRAAL--IALSKKRKLIWRNPFLINVLTGLYNSIRSFSTTADKIANLVKKNKVVV 60

Query: 47  FMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE 106
           FMKG+P++P+CGFSNAV+QIL+MHDV YD+HDVL+DE +R GIKE+++WPTIPQVFINGE
Sbjct: 61  FMKGIPDSPKCGFSNAVIQILKMHDVKYDAHDVLEDELLRQGIKEFSNWPTIPQVFINGE 120

Query: 107 FVGGCDILLKLHQSGELVEQLEK 129
           FVGGCDILL++H++GELV +L+K
Sbjct: 121 FVGGCDILLEMHRNGELVAELKK 143

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195354579|ref|XP_002043774.1| GM12034 [Drosophila sechellia] gi|194129000|gb|EDW51043.1| GM12034 [Drosophila sechellia]

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/113 (63%), Positives = 96/113 (84%)

Query: 17  SRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDS 76
           +RF  A     +   + ++D++V+ +KVVVFMKG P+APRCGFSNAVVQI+RMH V YD+
Sbjct: 25  ARFLAADAATGTAVDKATMDKLVRTNKVVVFMKGNPQAPRCGFSNAVVQIMRMHGVQYDA 84

Query: 77  HDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           HDVL++ES+R G+K+YT WPTIPQVFI+GEFVGGCDILL++HQSG+L+E+L+K
Sbjct: 85  HDVLQNESLRQGVKDYTDWPTIPQVFIDGEFVGGCDILLQMHQSGDLIEELKK 137

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195397435|ref|XP_002057334.1| GJ17033 [Drosophila virilis] gi|194147101|gb|EDW62820.1| GJ17033 [Drosophila virilis]

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 101/121 (83%), Gaps = 1/121 (0%)

Query: 10  LPRLAINSRFHNAWRTPYSTDVQK-SIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILR 68
           +P L    R+++A        + K +++++V+ +KVVVFMKG P+APRCGFSNAVVQI+R
Sbjct: 24  VPALTATRRWYSADAAAPPAALDKDTLEKLVRTNKVVVFMKGNPQAPRCGFSNAVVQIMR 83

Query: 69  MHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLE 128
           MH VPYD+HDVL++E++R G+K+YT WPTIPQVFINGEFVGGCDIL+++HQ+G+L+E+L+
Sbjct: 84  MHGVPYDAHDVLENEALRQGVKDYTDWPTIPQVFINGEFVGGCDILMQMHQNGDLIEELK 143

Query: 129 K 129
           K
Sbjct: 144 K 144

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	205
FB|FBgn0030584	159	CG14407 [Drosophila melanogast	0.380	0.490	0.769	3.7e-32
ZFIN|ZDB-GENE-040426-1957	155	glrx5 "glutaredoxin 5 homolog	0.478	0.632	0.595	3.9e-28
UNIPROTKB|Q5ZK23	162	GLRX5 "Uncharacterized protein	0.380	0.481	0.683	5.7e-27
RGD|1308383	152	Glrx5 "glutaredoxin 5" [Rattus	0.380	0.513	0.670	5.7e-27
UNIPROTKB|A6QLZ6	158	GLRX5 "Uncharacterized protein	0.380	0.493	0.670	9.4e-27
UNIPROTKB|Q86SX6	157	GLRX5 "Glutaredoxin-related pr	0.380	0.496	0.670	9.4e-27
UNIPROTKB|F1SAR5	154	GLRX5 "Uncharacterized protein	0.380	0.506	0.670	9.4e-27
MGI|MGI:1920296	152	Glrx5 "glutaredoxin 5 homolog	0.380	0.513	0.670	9.4e-27
UNIPROTKB|G4N1C1	167	MGG_09542 "Monothiol glutaredo	0.502	0.616	0.504	1.1e-23
CGD|CAL0004286	175	orf19.2782 [Candida albicans (	0.590	0.691	0.416	6.1e-23

FB|FBgn0030584 CG14407 [Drosophila melanogaster (taxid:7227)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 60/78 (76%), Positives = 74/78 (94%)

Query:    52 PEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGC 111
             P+APRCGFSNAVVQI+RMH V YD+HDVL++ES+R G+K+YT WPTIPQVFINGEFVGGC
Sbjct:    61 PQAPRCGFSNAVVQIMRMHGVQYDAHDVLQNESLRQGVKDYTDWPTIPQVFINGEFVGGC 120

Query:   112 DILLKLHQSGELVEQLEK 129
             DILL++HQSG+L+E+L+K
Sbjct:   121 DILLQMHQSGDLIEELKK 138

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1957 glrx5 "glutaredoxin 5 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 59/99 (59%), Positives = 74/99 (74%)

Query:    32 QKSIDEMXXXXXXXXXXXXXPEAPRCGFSNAVVQILRMHDVP-YDSHDVLKDESIRNGIK 90
             QK+++EM             P  P CGFSNAVVQILRMH V  Y S++VL D+ +R GIK
Sbjct:    42 QKNLEEMVKKDKVVVFMKGTPAQPMCGFSNAVVQILRMHGVDNYASYNVLDDQDVRQGIK 101

Query:    91 EYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
              +++WPTIPQVF NGEFVGGCDILL++HQSG+LVE+L+K
Sbjct:   102 TFSNWPTIPQVFFNGEFVGGCDILLQMHQSGDLVEELQK 140

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0030097 "hemopoiesis" evidence=IMP

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016226 "iron-sulfur cluster assembly" evidence=IMP

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|Q5ZK23 GLRX5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 54/79 (68%), Positives = 68/79 (86%)

Query:    52 PEAPRCGFSNAVVQILRMHDVP-YDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG 110
             P  P CGFSNAVVQILR+H V  Y +HDVL+D  +R GIK Y++WPTIPQV++NGEFVGG
Sbjct:    67 PAQPLCGFSNAVVQILRLHGVEDYRAHDVLQDPDLRQGIKNYSNWPTIPQVYLNGEFVGG 126

Query:   111 CDILLKLHQSGELVEQLEK 129
             CDILL++HQ+G+LVE+L+K
Sbjct:   127 CDILLQMHQNGDLVEELKK 145

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

RGD|1308383 Glrx5 "glutaredoxin 5" [Rattus norvegicus (taxid:10116)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 53/79 (67%), Positives = 71/79 (89%)

Query:    52 PEAPRCGFSNAVVQILRMHDV-PYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG 110
             PE P+CGFSNAVVQILR+H V  Y +++VL+D  +R GIK+Y++WPTIPQV++NGEFVGG
Sbjct:    58 PEQPQCGFSNAVVQILRLHGVRDYAAYNVLEDPELRQGIKDYSNWPTIPQVYLNGEFVGG 117

Query:   111 CDILLKLHQSGELVEQLEK 129
             CDILL++HQ+G+LVE+L+K
Sbjct:   118 CDILLQMHQNGDLVEELKK 136

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

UNIPROTKB|A6QLZ6 GLRX5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 53/79 (67%), Positives = 70/79 (88%)

Query:    52 PEAPRCGFSNAVVQILRMHDV-PYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG 110
             PE P+CGFSNAVVQILR+H V  Y +++VL D  +R GIK+Y++WPTIPQV++NGEFVGG
Sbjct:    63 PEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFVGG 122

Query:   111 CDILLKLHQSGELVEQLEK 129
             CDILL++HQ+G+LVE+L+K
Sbjct:   123 CDILLQMHQNGDLVEELKK 141

GO:0005634 "nucleus" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

UNIPROTKB|Q86SX6 GLRX5 "Glutaredoxin-related protein 5, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 53/79 (67%), Positives = 70/79 (88%)

Query:    52 PEAPRCGFSNAVVQILRMHDV-PYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG 110
             PE P+CGFSNAVVQILR+H V  Y +++VL D  +R GIK+Y++WPTIPQV++NGEFVGG
Sbjct:    62 PEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 121

Query:   111 CDILLKLHQSGELVEQLEK 129
             CDILL++HQ+G+LVE+L+K
Sbjct:   122 CDILLQMHQNGDLVEELKK 140

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0030097 "hemopoiesis" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|F1SAR5 GLRX5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 53/79 (67%), Positives = 70/79 (88%)

Query:    52 PEAPRCGFSNAVVQILRMHDV-PYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG 110
             PE P+CGFSNAVVQILR+H V  Y +++VL D  +R GIK+Y++WPTIPQV++NGEFVGG
Sbjct:    59 PEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPQLRQGIKDYSNWPTIPQVYLNGEFVGG 118

Query:   111 CDILLKLHQSGELVEQLEK 129
             CDILL++HQ+G+LVE+L+K
Sbjct:   119 CDILLQMHQNGDLVEELKK 137

GO:0005634 "nucleus" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

MGI|MGI:1920296 Glrx5 "glutaredoxin 5 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 53/79 (67%), Positives = 70/79 (88%)

Query:    52 PEAPRCGFSNAVVQILRMHDV-PYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG 110
             PE P+CGFSNAVVQILR+H V  Y +++VL D  +R GIK+Y++WPTIPQV++NGEFVGG
Sbjct:    58 PEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 117

Query:   111 CDILLKLHQSGELVEQLEK 129
             CDILL++HQ+G+LVE+L+K
Sbjct:   118 CDILLQMHQNGDLVEELKK 136

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0009055 "electron carrier activity" evidence=IEA

GO:0015035 "protein disulfide oxidoreductase activity" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|G4N1C1 MGG_09542 "Monothiol glutaredoxin-5" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 54/107 (50%), Positives = 76/107 (71%)

Query:    28 STDVQKSIDEMXXXXXXXXXXXXXPEAPRCGFSNAVVQILRMHDV-P--YDSHDVLKDES 84
             +++V+++ID+              PE P+CGFS A +QIL M  V P  + +++VL+D+S
Sbjct:    46 TSEVRQAIDKAVASAPVVLFMKGTPETPQCGFSRASIQILSMQGVDPEKFAAYNVLEDQS 105

Query:    85 IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQL-EKG 130
             +R GIKEY+ WPTIPQV+I+ EFVGGCDIL+ +HQSGEL + L EKG
Sbjct:   106 LREGIKEYSEWPTIPQVYIDKEFVGGCDILVSMHQSGELGKMLAEKG 152

GO:0005575 "cellular_component" evidence=ND

CGD|CAL0004286 orf19.2782 [Candida albicans (taxid:5476)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 52/125 (41%), Positives = 81/125 (64%)

Query:    11 PRLAINSRFHNAWRTPY-STDVQKSIDEMXXXXXXXXXXXXXPEAPRCGFSNAVVQILRM 69
             P L +N+   N  ++ + ST+++ ++D+              PE P+CGFS A +QIL  
Sbjct:    22 PGLLLNNFRGNFQQSRFISTELKDALDKAVTTSPVVLFMKGTPEFPQCGFSRATIQILGQ 81

Query:    70 HDV-P--YDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQ 126
               V P  + +++VL+D  +R GIKEY+SWPTIPQ+++NGEF+GGCDI+  + Q+GEL E 
Sbjct:    82 QGVDPEKFAAYNVLEDSELREGIKEYSSWPTIPQLYVNGEFIGGCDIITSMAQNGELAEL 141

Query:   127 LEKGD 131
             LE+ +
Sbjct:   142 LEESN 146

GO:0034599 "cellular response to oxidative stress" evidence=IEA

GO:0006970 "response to osmotic stress" evidence=IEA

GO:0015036 "disulfide oxidoreductase activity" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q68W05	GLRX2_RICTY	No assigned EC number	0.5104	0.4682	0.8648	yes	N/A
Q6PBM1	GLRX5_DANRE	No assigned EC number	0.6728	0.5170	0.6838	yes	N/A
Q851Y7	GRXS7_ORYSJ	No assigned EC number	0.5445	0.4926	0.6011	yes	N/A
Q80Y14	GLRX5_MOUSE	No assigned EC number	0.6168	0.5170	0.6973	yes	N/A
Q86SX6	GLRX5_HUMAN	No assigned EC number	0.6530	0.4731	0.6178	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	205
cd03028	90	cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family	6e-55
TIGR00365	97	TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4	5e-49
COG0278	105	COG0278, COG0278, Glutaredoxin-related protein [Po	4e-45
cd02066	72	cd02066, GRX_family, Glutaredoxin (GRX) family; co	3e-30
PTZ00062	204	PTZ00062, PTZ00062, glutaredoxin; Provisional	6e-26
PRK10824	115	PRK10824, PRK10824, glutaredoxin-4; Provisional	2e-23
pfam00462	60	pfam00462, Glutaredoxin, Glutaredoxin	8e-23
cd03419	82	cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) fam	3e-14
TIGR02180	84	TIGR02180, GRX_euk, Glutaredoxin	2e-12
COG0695	80	COG0695, GrxC, Glutaredoxin and related proteins [	3e-11
TIGR02181	79	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	4e-09
cd03031	147	cd03031, GRX_GRX_like, Glutaredoxin (GRX) family,	1e-08
cd03418	75	cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) fam	3e-08
TIGR02189	99	TIGR02189, GlrX-like_plant, Glutaredoxin-like fami	3e-06
TIGR02190	79	TIGR02190, GlrX-dom, Glutaredoxin-family domain	3e-05
cd03029	72	cd03029, GRX_hybridPRX5, Glutaredoxin (GRX) family	5e-05
PRK10638	83	PRK10638, PRK10638, glutaredoxin 3; Provisional	5e-05

>gnl|CDD|239326 cd03028, GRX_PICOT_like, Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

 Score =  169 bits (430), Expect = 6e-55
 Identities = 50/90 (55%), Positives = 71/90 (78%)

Query: 35  IDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS 94
           I +++K++ VV+FMKG PE PRCGFS  VVQIL    V + + D+L+DE +R G+KEY++
Sbjct: 1   IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSN 60

Query: 95  WPTIPQVFINGEFVGGCDILLKLHQSGELV 124
           WPT PQ+++NGE VGGCDI+ ++H+SGEL 
Sbjct: 61  WPTFPQLYVNGELVGGCDIVKEMHESGELQ 90

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein in Arabidopsis thaliana, and PfGLP-1, a GRX-like protein from Plasmodium falciparum. Length = 90

>gnl|CDD|188046 TIGR00365, TIGR00365, monothiol glutaredoxin, Grx4 family

 Score =  154 bits (392), Expect = 5e-49
 Identities = 50/97 (51%), Positives = 71/97 (73%)

Query: 31  VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIK 90
             + I E + ++ VV++MKG P+ P+CGFS   VQIL    VP+   +VL+D  IR GIK
Sbjct: 1   TIERIKEQIAENPVVLYMKGTPQFPQCGFSARAVQILNACGVPFAYVNVLEDPEIRQGIK 60

Query: 91  EYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQL 127
           EY++WPTIPQ+++ GEFVGGCDI+++++QSGEL   L
Sbjct: 61  EYSNWPTIPQLYVKGEFVGGCDIIMEMYQSGELQTLL 97

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation [Energy metabolism, Electron transport]. Length = 97

>gnl|CDD|223355 COG0278, COG0278, Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

 Score =  144 bits (366), Expect = 4e-45
 Identities = 51/102 (50%), Positives = 72/102 (70%), Gaps = 1/102 (0%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-DVPYDSHDVLKDESIR 86
             ++   I + +K++ VV+FMKG PE P+CGFS   VQIL     V +   DVL+D  IR
Sbjct: 1   MMEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIR 60

Query: 87  NGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLE 128
            G+KEY++WPT PQ+++NGEFVGGCDI+ +++QSGEL   L+
Sbjct: 61  QGLKEYSNWPTFPQLYVNGEFVGGCDIVREMYQSGELQTLLK 102

Length = 105

>gnl|CDD|239017 cd02066, GRX_family, Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score =  105 bits (265), Expect = 3e-30
 Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 5/77 (6%)

Query: 43  KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102
           KVVVF K       C +     ++L    + ++  D+L+D  +R  +KE + WPT+PQ+F
Sbjct: 1   KVVVFSKST-----CPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIF 55

Query: 103 INGEFVGGCDILLKLHQ 119
           INGEF+GG D L  LH+
Sbjct: 56  INGEFIGGYDDLKALHE 72

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which are members of this family. E. coli GRX2, however, is a 24-kDa protein that belongs to the GSH S-transferase (GST) family. Length = 72

>gnl|CDD|240250 PTZ00062, PTZ00062, glutaredoxin; Provisional

 Score = 99.1 bits (247), Expect = 6e-26
 Identities = 38/96 (39%), Positives = 65/96 (67%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN 87
           S D  + I+ +++  K+++FMKG    P C FSNAVV +L    V Y+++++ +D  +R 
Sbjct: 99  SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLRE 158

Query: 88  GIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGEL 123
            +K Y++WPT PQ+++NGE +GG DI+ +L++S  L
Sbjct: 159 ELKVYSNWPTYPQLYVNGELIGGHDIIKELYESNSL 194

Length = 204

>gnl|CDD|182759 PRK10824, PRK10824, glutaredoxin-4; Provisional

 Score = 89.6 bits (222), Expect = 2e-23
 Identities = 40/109 (36%), Positives = 70/109 (64%), Gaps = 1/109 (0%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN 87
           ST ++K I   + ++ ++++MKG P+ P CGFS   VQ L      +   D+L++  IR 
Sbjct: 2   STTIEK-IQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRA 60

Query: 88  GIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQ 136
            + +Y +WPT PQ++++GE VGGCDI+++++Q GEL + +++   K K 
Sbjct: 61  ELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKS 109

Length = 115

>gnl|CDD|215931 pfam00462, Glutaredoxin, Glutaredoxin

 Score = 86.4 bits (215), Expect = 8e-23
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)

Query: 44  VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI 103
           VV+F K     P C F     ++L    V ++  DV +D  IR  +KE + WPT+PQVFI
Sbjct: 1   VVLFTK-----PTCPFCKRAKRLLDSLGVKFEEIDVDEDPEIREELKELSGWPTVPQVFI 55

Query: 104 NGEFV 108
           +GE +
Sbjct: 56  DGEHI 60

Length = 60

>gnl|CDD|239511 cd03419, GRX_GRXh_1_2_like, Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 64.9 bits (159), Expect = 3e-14
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 8/86 (9%)

Query: 43  KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES---IRNGIKEYTSWPTIP 99
            VVVF K       C +      +L+   V     ++ + E    I++ ++E T   T+P
Sbjct: 1   PVVVFSK-----SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVP 55

Query: 100 QVFINGEFVGGCDILLKLHQSGELVE 125
            VFI G+F+GGCD L+ LH+SG+LV+
Sbjct: 56  NVFIGGKFIGGCDDLMALHKSGKLVK 81

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, which are members of this subfamily. Also included in this subfamily are the N-terminal GRX domains of proteins similar to human thioredoxin reductase 1 and 3. Length = 82

>gnl|CDD|233765 TIGR02180, GRX_euk, Glutaredoxin

 Score = 60.0 bits (146), Expect = 2e-12
 Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 10/89 (11%)

Query: 44  VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH----DVLKDES-IRNGIKEYTSWPTI 98
           VVVF K       C +     +IL   +V         D L + S I++ ++E T   T+
Sbjct: 1   VVVFSK-----SYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTV 55

Query: 99  PQVFINGEFVGGCDILLKLHQSGELVEQL 127
           P +FING+F+GGC  LL L++SG+L E L
Sbjct: 56  PNIFINGKFIGGCSDLLALYKSGKLAELL 84

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses. Length = 84

>gnl|CDD|223767 COG0695, GrxC, Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

 Score = 56.9 bits (138), Expect = 3e-11
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 7/84 (8%)

Query: 42  SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIP 99
           + V ++ K     P C +     ++L    V Y+  DV  DE    R  +K      T+P
Sbjct: 1   ANVTIYTK-----PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVP 55

Query: 100 QVFINGEFVGGCDILLKLHQSGEL 123
           Q+FI G+ VGGCD L  L   G+L
Sbjct: 56  QIFIGGKHVGGCDDLDALEAKGKL 79

Length = 80

>gnl|CDD|233766 TIGR02181, GRX_bact, Glutaredoxin, GrxC family

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 21/69 (30%), Positives = 34/69 (49%)

Query: 55  PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDIL 114
           P C +      +L    V +    V  D ++R+ + + +   T+PQ+FI    VGGCD L
Sbjct: 7   PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDL 66

Query: 115 LKLHQSGEL 123
             L + G+L
Sbjct: 67  YALDREGKL 75

Glutaredoxins are thioltransferases (disulfide reductases) which utilize glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system. Glutaredoxins utilize the CXXC motif common to thioredoxins and are involved in multiple cellular processes including protection from redox stress, reduction of critical enzymes such as ribonucleotide reductase and the generation of reduced sulfur for iron sulfur cluster formation. Glutaredoxins are capable of reduction of mixed disulfides of glutathione as well as the formation of glutathione mixed disulfides. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides [Energy metabolism, Electron transport]. Length = 79

>gnl|CDD|239329 cd03031, GRX_GRX_like, Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

 Score = 51.5 bits (124), Expect = 1e-08
 Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 6/74 (8%)

Query: 61  NAVVQILRMHDVPYDSHDV-----LKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILL 115
           N V  IL    V +D  DV      ++E +R  +       ++P+VF++G ++GG + +L
Sbjct: 20  NNVRAILESFRVKFDERDVSMDSGFREE-LRELLGAELKAVSLPRVFVDGRYLGGAEEVL 78

Query: 116 KLHQSGELVEQLEK 129
           +L++SGEL + L+ 
Sbjct: 79  RLNESGELRKLLKG 92

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. Length = 147

>gnl|CDD|239510 cd03418, GRX_GRXb_1_3_like, Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

 Score = 48.7 bits (117), Expect = 3e-08
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 6/80 (7%)

Query: 43  KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG-IKEYTSWPTIPQV 101
           KV ++ K     P C +      +L    V Y+  DV  D ++R   I       T+PQ+
Sbjct: 1   KVEIYTK-----PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQI 55

Query: 102 FINGEFVGGCDILLKLHQSG 121
           FI    +GGCD L  L + G
Sbjct: 56  FIGDVHIGGCDDLYALERKG 75

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH -> GSH reductase -> GSH -> GRX -> protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including E. coli GRX1 and GRX3, which are members of this subfamily. Length = 75

>gnl|CDD|233771 TIGR02189, GlrX-like_plant, Glutaredoxin-like family

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 8/95 (8%)

Query: 38  MVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES---IRNGIKEYTS 94
           MV +  VV+F +       C   + V ++L    V    H++ K+ +   I N +     
Sbjct: 4   MVSEKAVVIFSRS-----SCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGC 58

Query: 95  WPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
            P +P VF+ G+ VGG + ++ LH SG LV  L++
Sbjct: 59  SPAVPAVFVGGKLVGGLENVMALHISGSLVPMLKQ 93

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa. Length = 99

>gnl|CDD|131245 TIGR02190, GlrX-dom, Glutaredoxin-family domain

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 40  KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN-GIKEYTSWPTI 98
           K   VVVF K  P  P C  + A ++     +  YD  ++      R   ++  T   T+
Sbjct: 6   KPESVVVFTK--PGCPFCAKAKATLK-----EKGYDFEEIPLGNDARGRSLRAVTGATTV 58

Query: 99  PQVFINGEFVGGCDIL 114
           PQVFI G+ +GG D L
Sbjct: 59  PQVFIGGKLIGGSDEL 74

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain. Length = 79

>gnl|CDD|239327 cd03029, GRX_hybridPRX5, Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

 Score = 39.8 bits (93), Expect = 5e-05
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 6/75 (8%)

Query: 42  SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101
             V +F K     P C F       L+ + + Y+   + KD + R+ ++  T   T+PQV
Sbjct: 1   ESVSLFTK-----PGCPFCARAKAALQENGISYEEIPLGKDITGRS-LRAVTGAMTVPQV 54

Query: 102 FINGEFVGGCDILLK 116
           FI+GE +GG D L K
Sbjct: 55  FIDGELIGGSDDLEK 69

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH -> GSH reductase -> GSH -> GRX domain of hybrid -> PRX domain of hybrid -> peroxide substrate. Length = 72

>gnl|CDD|182607 PRK10638, PRK10638, glutaredoxin 3; Provisional

 Score = 40.2 bits (94), Expect = 5e-05
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 70  HDVPYDSHDVLKDESI-RNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGEL 123
            ++P D     ++E I R+G        T+PQ+FI+ + +GGCD L  L   G L
Sbjct: 30  QEIPIDGDAAKREEMIKRSGRT------TVPQIFIDAQHIGGCDDLYALDARGGL 78

Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	205
cd03031	147	GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d	100.0
KOG2824|consensus	281		100.0
PRK10824	115	glutaredoxin-4; Provisional	99.96
TIGR00365	97	monothiol glutaredoxin, Grx4 family. The gene for	99.95
TIGR02189	99	GlrX-like_plant Glutaredoxin-like family. This fam	99.93
cd03028	90	GRX_PICOT_like Glutaredoxin (GRX) family, PKC-inte	99.93
PHA03050	108	glutaredoxin; Provisional	99.93
COG0278	105	Glutaredoxin-related protein [Posttranslational mo	99.93
PTZ00062	204	glutaredoxin; Provisional	99.92
KOG1752|consensus	104		99.9
PRK10638	83	glutaredoxin 3; Provisional	99.88
TIGR02181	79	GRX_bact Glutaredoxin, GrxC family. This family of	99.87
KOG0911|consensus	227		99.86
cd03030	92	GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3	99.86
cd03418	75	GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX b	99.83
cd03027	73	GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Eg	99.83
TIGR02180	84	GRX_euk Glutaredoxin. This model represents eukary	99.8
COG0695	80	GrxC Glutaredoxin and related proteins [Posttransl	99.8
cd03419	82	GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX h	99.79
cd03029	72	GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hyb	99.78
TIGR02190	79	GlrX-dom Glutaredoxin-family domain. This C-termin	99.77
cd02066	72	GRX_family Glutaredoxin (GRX) family; composed of	99.75
TIGR02183	86	GRXA Glutaredoxin, GrxA family. This model include	99.75
PRK11200	85	grxA glutaredoxin 1; Provisional	99.75
PF00462	60	Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Gl	99.7
PRK12759	410	bifunctional gluaredoxin/ribonucleoside-diphosphat	99.66
TIGR02194	72	GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-red	99.59
PRK10329	81	glutaredoxin-like protein; Provisional	99.57
PF04908	99	SH3BGR: SH3-binding, glutamic acid-rich protein; I	99.48
TIGR02196	74	GlrX_YruB Glutaredoxin-like protein, YruB-family.	99.36
cd02976	73	NrdH NrdH-redoxin (NrdH) family; NrdH is a small m	99.32
TIGR02200	77	GlrX_actino Glutaredoxin-like protein. This family	99.22
cd02973	67	TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-	98.99
cd03041	77	GST_N_2GST_N GST_N family, 2 repeats of the N-term	98.85
cd00570	71	GST_N_family Glutathione S-transferase (GST) famil	98.75
cd03040	77	GST_N_mPGES2 GST_N family; microsomal Prostaglandi	98.74
cd03037	71	GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) sub	98.68
cd03036	111	ArsC_like Arsenate Reductase (ArsC) family, unknow	98.51
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.5
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.45
cd02977	105	ArsC_family Arsenate Reductase (ArsC) family; comp	98.44
cd03055	89	GST_N_Omega GST_N family, Class Omega subfamily; G	98.42
cd03059	73	GST_N_SspA GST_N family, Stringent starvation prot	98.41
cd03060	71	GST_N_Omega_like GST_N family, Omega-like subfamil	98.38
cd03026	89	AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxid	98.36
PF05768	81	DUF836: Glutaredoxin-like domain (DUF836); InterPr	98.34
PF13417	75	GST_N_3: Glutathione S-transferase, N-terminal dom	98.32
PRK01655	131	spxA transcriptional regulator Spx; Reviewed	98.3
cd03051	74	GST_N_GTT2_like GST_N family, Saccharomyces cerevi	98.3
cd03045	74	GST_N_Delta_Epsilon GST_N family, Class Delta and	98.28
TIGR00411	82	redox_disulf_1 small redox-active disulfide protei	98.21
cd03056	73	GST_N_4 GST_N family, unknown subfamily 4; compose	98.2
KOG4023|consensus	108		98.19
TIGR01617	117	arsC_related transcriptional regulator, Spx/MgsR f	98.15
cd03032	115	ArsC_Spx Arsenate Reductase (ArsC) family, Spx sub	98.14
KOG3029|consensus	370		98.08
PRK12559	131	transcriptional regulator Spx; Provisional	98.07
PRK13344	132	spxA transcriptional regulator Spx; Reviewed	98.05
cd03035	105	ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb s	98.04
cd03054	72	GST_N_Metaxin GST_N family, Metaxin subfamily; com	97.96
PHA02125	75	thioredoxin-like protein	97.95
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	97.95
cd03033	113	ArsC_15kD Arsenate Reductase (ArsC) family, 15kD p	97.94
TIGR00412	76	redox_disulf_2 small redox-active disulfide protei	97.87
cd03053	76	GST_N_Phi GST_N family, Class Phi subfamily; compo	97.83
cd03058	74	GST_N_Tau GST_N family, Class Tau subfamily; GSTs	97.81
cd03061	91	GST_N_CLIC GST_N family, Chloride Intracellular Ch	97.8
cd03052	73	GST_N_GDAP1 GST_N family, Ganglioside-induced diff	97.73
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.68
cd03076	73	GST_N_Pi GST_N family, Class Pi subfamily; GSTs ar	97.67
cd03042	73	GST_N_Zeta GST_N family, Class Zeta subfamily; GST	97.66
PF13192	76	Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZY	97.62
cd03049	73	GST_N_3 GST_N family, unknown subfamily 3; compose	97.58
cd03080	75	GST_N_Metaxin_like GST_N family, Metaxin subfamily	97.58
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	97.57
cd03039	72	GST_N_Sigma_like GST_N family, Class Sigma_like; c	97.56
TIGR01295	122	PedC_BrcD bacteriocin transport accessory protein,	97.56
PHA02278	103	thioredoxin-like protein	97.55
COG1393	117	ArsC Arsenate reductase and related proteins, glut	97.53
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	97.51
cd03048	81	GST_N_Ure2p_like GST_N family, Ure2p-like subfamil	97.49
TIGR01616	126	nitro_assoc nitrogenase-associated protein. This m	97.43
TIGR02182	209	GRXB Glutaredoxin, GrxB family. This model include	97.42
COG4545	85	Glutaredoxin-related protein [Posttranslational mo	97.4
cd03038	84	GST_N_etherase_LigE GST_N family, Beta etherase Li	97.4
PRK10026	141	arsenate reductase; Provisional	97.39
PRK10387	210	glutaredoxin 2; Provisional	97.38
TIGR00014	114	arsC arsenate reductase (glutaredoxin). composed o	97.38
PRK10853	118	putative reductase; Provisional	97.37
cd03034	112	ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC s	97.35
cd01659	69	TRX_superfamily Thioredoxin (TRX) superfamily; a l	97.3
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	97.25
PF13409	70	GST_N_2: Glutathione S-transferase, N-terminal dom	97.25
cd03050	76	GST_N_Theta GST_N family, Class Theta subfamily; c	97.18
cd03044	75	GST_N_EF1Bgamma GST_N family, Gamma subunit of Elo	97.16
cd02947	93	TRX_family TRX family; composed of two groups: Gro	97.13
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	97.13
PTZ00051	98	thioredoxin; Provisional	97.01
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	97.0
PF14595	129	Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.	96.99
cd02989	113	Phd_like_TxnDC9 Phosducin (Phd)-like family, Thior	96.99
cd02957	113	Phd_like Phosducin (Phd)-like family; composed of	96.99
PRK09481	211	sspA stringent starvation protein A; Provisional	96.96
cd03047	73	GST_N_2 GST_N family, unknown subfamily 2; compose	96.93
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	96.87
cd03057	77	GST_N_Beta GST_N family, Class Beta subfamily; GST	96.77
PF03960	110	ArsC: ArsC family; InterPro: IPR006660 Several bac	96.75
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	96.75
cd03046	76	GST_N_GTT1_like GST_N family, Saccharomyces cerevi	96.68
cd03043	73	GST_N_1 GST_N family, unknown subfamily 1; compose	96.67
cd02987	175	Phd_like_Phd Phosducin (Phd)-like family, Phd subf	96.65
cd02986	114	DLP Dim1 family, Dim1-like protein (DLP) subfamily	96.63
TIGR00862	236	O-ClC intracellular chloride channel protein. Thes	96.63
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	96.59
KOG0910|consensus	150		96.51
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.5
PRK15113	214	glutathione S-transferase; Provisional	96.47
TIGR02187	215	GlrX_arch Glutaredoxin-like domain protein. This f	96.47
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	96.46
cd02959	117	ERp19 Endoplasmic reticulum protein 19 (ERp19) fam	96.21
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	96.14
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	96.14
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	96.12
PRK09381	109	trxA thioredoxin; Provisional	96.05
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	96.05
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	96.05
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	95.98
cd02962	152	TMX2 TMX2 family; composed of proteins similar to	95.96
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	95.95
PRK10996	139	thioredoxin 2; Provisional	95.84
KOG4244|consensus	281		95.83
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	95.82
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	95.77
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	95.72
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	95.69
PLN02817	265	glutathione dehydrogenase (ascorbate)	95.68
TIGR01262	210	maiA maleylacetoacetate isomerase. Maleylacetoacet	95.65
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	95.62
KOG0406|consensus	231		95.57
PLN02473	214	glutathione S-transferase	95.55
PRK10877	232	protein disulfide isomerase II DsbC; Provisional	95.54
cd03003	101	PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfam	95.5
KOG0907|consensus	106		95.42
cd02988	192	Phd_like_VIAF Phosducin (Phd)-like family, Viral i	95.42
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	95.41
PLN02378	213	glutathione S-transferase DHAR1	95.39
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	95.38
COG3019	149	Predicted metal-binding protein [General function	95.24
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	95.21
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	95.16
COG2999	215	GrxB Glutaredoxin 2 [Posttranslational modificatio	95.15
cd03079	74	GST_N_Metaxin2 GST_N family, Metaxin subfamily, Me	94.98
cd02993	109	PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfat	94.96
cd03077	79	GST_N_Alpha GST_N family, Class Alpha subfamily; G	94.95
PTZ00062	204	glutaredoxin; Provisional	94.81
PF13728	215	TraF: F plasmid transfer operon protein	94.72
cd03006	113	PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamil	94.58
cd02952	119	TRP14_like Human TRX-related protein 14 (TRP14)-li	94.57
cd03078	73	GST_N_Metaxin1_like GST_N family, Metaxin subfamil	94.47
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	94.45
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	94.4
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	94.27
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	94.25
cd03020	197	DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamil	94.2
KOG1422|consensus	221		94.18
cd02972	98	DsbA_family DsbA family; consists of DsbA and DsbA	93.92
COG0625	211	Gst Glutathione S-transferase [Posttranslational m	93.85
PRK13728	181	conjugal transfer protein TrbB; Provisional	93.84
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	93.8
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	93.79
PRK10357	202	putative glutathione S-transferase; Provisional	93.71
PF11009	105	DUF2847: Protein of unknown function (DUF2847); In	93.59
PTZ00102	477	disulphide isomerase; Provisional	93.43
PF13899	82	Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_	93.43
PLN00410	142	U5 snRNP protein, DIM1 family; Provisional	93.38
PLN02395	215	glutathione S-transferase	93.37
PF02798	76	GST_N: Glutathione S-transferase, N-terminal domai	93.37
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	93.33
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	93.31
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	93.23
PF06953	123	ArsD: Arsenical resistance operon trans-acting rep	93.07
cd02992	114	PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidas	92.99
COG2143	182	Thioredoxin-related protein [Posttranslational mod	92.89
PRK13972	215	GSH-dependent disulfide bond oxidoreductase; Provi	92.36
PRK11752	264	putative S-transferase; Provisional	92.25
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	91.98
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	91.52
PF06764	202	DUF1223: Protein of unknown function (DUF1223); In	91.37
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	91.08
PRK13703	248	conjugal pilus assembly protein TraF; Provisional	91.06
PTZ00057	205	glutathione s-transferase; Provisional	90.83
cd02995	104	PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain	90.6
cd03075	82	GST_N_Mu GST_N family, Class Mu subfamily; GSTs ar	90.58
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	90.57
KOG3425|consensus	128		90.53
PF06110	119	DUF953: Eukaryotic protein of unknown function (DU	90.43
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	90.17
COG5494	265	Predicted thioredoxin/glutaredoxin [Posttranslatio	89.66
cd02982	103	PDI_b'_family Protein Disulfide Isomerase (PDIb')	88.45
TIGR00424	463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	88.3
TIGR01130	462	ER_PDI_fam protein disulfide isomerases, eukaryoti	88.11
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	88.01
PRK10542	201	glutathionine S-transferase; Provisional	87.67
KOG0868|consensus	217		86.69
PLN02309	457	5'-adenylylsulfate reductase	86.16
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	85.17
KOG1695|consensus	206		84.9
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	84.86
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	84.13
PF10568	72	Tom37: Outer mitochondrial membrane transport comp	84.12
cd02960	130	AGR Anterior Gradient (AGR) family; members of thi	84.09
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	84.01
cd03023	154	DsbA_Com1_like DsbA family, Com1-like subfamily; c	81.3
COG5429	261	Uncharacterized secreted protein [Function unknown	80.92
PRK11657	251	dsbG disulfide isomerase/thiol-disulfide oxidase;	80.77
COG0526	127	TrxA Thiol-disulfide isomerase and thioredoxins [P	80.3

>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs

Probab=100.00  E-value=9e-38  Score=249.93  Aligned_cols=137  Identities=26%  Similarity=0.386  Sum_probs=126.4

Q ss_pred             cEEEEEeeCCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC----CCccEEeeCCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW----PTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~----~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +||||+++++++ .+||+|.+||++|++++|+|+++||++|++++++|+++++.    .++|||||+|++|||+||+++|
T Consensus         1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L   80 (147)
T cd03031           1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL   80 (147)
T ss_pred             CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence            589999999999 99999999999999999999999999999999999999875    8999999999999999999999


Q ss_pred             HhcccHHHHHhhcCCccccceeecccCCC--CcccCcccCCCCccccC---CCCccccccccceeeEec
Q psy221          118 HQSGELVEQLEKGDQKRKQFILINYISGD--AVRCYECSSAQDPKGED---NCGAYSKFHKERHISVEC  181 (205)
Q Consensus       118 ~e~GeL~~~L~~~~~~~~~~~~~~~gcGg--fv~C~~CsGS~k~~~~~---~~g~~~~~~~~~~~~~~c  181 (205)
                      |++|+|.++|+.++..  .....|.+|||  ||||.+|+||+|++.++   .++.-++.++++|.-|+|
T Consensus        81 ~e~G~L~~lL~~~~~~--~~~~~C~~Cgg~rfv~C~~C~Gs~k~~~~~~~~~~~~~rC~~Cnengl~~c  147 (147)
T cd03031          81 NESGELRKLLKGIRAR--AGGGVCEGCGGARFVPCSECNGSCKVFAENATAAGGFLRCPECNENGLVRC  147 (147)
T ss_pred             HHcCCHHHHHhhcccc--cCCCCCCCCCCcCeEECCCCCCcceEEeccCcccccEEECCCCCccccccC
Confidence            9999999999988433  23445889998  89999999999999988   477889999999999988

This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.

>KOG2824|consensus

Probab=100.00  E-value=1e-33  Score=243.23  Aligned_cols=141  Identities=23%  Similarity=0.363  Sum_probs=131.7

Q ss_pred             CCcEEEEEeeCCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC----CCccEEeeCCeEeechhHHH
Q psy221           41 KSKVVVFMKGVPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW----PTIPQVFINGEFVGGCDILL  115 (205)
Q Consensus        41 ~~~VvlYsk~~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~----~tvPqvFI~G~~IGG~del~  115 (205)
                      .+.||||++|+|++ .|+.+|..|+++|++++|.|+|+||++|..+++||+++.|.    .++|+|||+|+||||+++|+
T Consensus       130 e~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~  209 (281)
T KOG2824|consen  130 EDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVV  209 (281)
T ss_pred             CceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhh
Confidence            57999999999999 99999999999999999999999999999999999999875    58999999999999999999


Q ss_pred             HHHhcccHHHHHhhcCCccccceeecccCCC--CcccCcccCCCCccc--cCCCCccccccccceeeEecCCC
Q psy221          116 KLHQSGELVEQLEKGDQKRKQFILINYISGD--AVRCYECSSAQDPKG--EDNCGAYSKFHKERHISVECNTE  184 (205)
Q Consensus       116 ~l~e~GeL~~~L~~~~~~~~~~~~~~~gcGg--fv~C~~CsGS~k~~~--~~~~g~~~~~~~~~~~~~~c~~~  184 (205)
                      +|+|.|+|.++|++++   ......|.+|||  |+||..|+||+|++.  ++..+.-++-.+++|.-|+|+.+
T Consensus       210 ~LnE~GkL~~lL~~~p---~~~~~~C~~CGg~rFlpC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLvrCp~C  279 (281)
T KOG2824|consen  210 RLNEEGKLGKLLKGIP---CEGGGVCESCGGARFLPCSNCHGSCKVHEEEEDDGGVLRCLECNENGLVRCPVC  279 (281)
T ss_pred             hhhhcchHHHHHhcCC---CCCCCcCCCcCCcceEecCCCCCceeeeeeccCCCcEEECcccCCCCceeCCcc
Confidence            9999999999999986   233356789997  899999999999999  88999999999999999999875

>PRK10824 glutaredoxin-4; Provisional

Probab=99.96  E-value=1.1e-28  Score=189.95  Aligned_cols=103  Identities=34%  Similarity=0.765  Sum_probs=99.4

Q ss_pred             HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEee
Q psy221           30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVG  109 (205)
Q Consensus        30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IG  109 (205)
                      +..+++++++++++||||++|+|..++||||.+|+++|.+++++|.++||..+++.+++|++++|++|+|||||||++||
T Consensus         3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G~~IG   82 (115)
T PRK10824          3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVG   82 (115)
T ss_pred             hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECCEEEc
Confidence            47789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHhcccHHHHHhhcCC
Q psy221          110 GCDILLKLHQSGELVEQLEKGDQ  132 (205)
Q Consensus       110 G~del~~l~e~GeL~~~L~~~~~  132 (205)
                      |+|++.+|+++|+|.++|+.+++
T Consensus        83 G~ddl~~l~~~G~L~~lL~~~~~  105 (115)
T PRK10824         83 GCDIVIEMYQRGELQQLIKETAA  105 (115)
T ss_pred             ChHHHHHHHHCCCHHHHHHHHHh
Confidence            99999999999999999998765

>TIGR00365 monothiol glutaredoxin, Grx4 family

Probab=99.95  E-value=4.5e-27  Score=175.66  Aligned_cols=95  Identities=54%  Similarity=1.038  Sum_probs=91.6

Q ss_pred             HHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221           33 KSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        33 ~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d  112 (205)
                      +++++++++++||||++|+++.++||||.+|+++|+++||+|+++||..+++.+++|++++|++++|||||||++|||+|
T Consensus         3 ~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~d   82 (97)
T TIGR00365         3 ERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVKGEFVGGCD   82 (97)
T ss_pred             HHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEeChH
Confidence            67889999999999999998889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcccHHHHH
Q psy221          113 ILLKLHQSGELVEQL  127 (205)
Q Consensus       113 el~~l~e~GeL~~~L  127 (205)
                      ++.+|+++|+|.++|
T Consensus        83 dl~~l~~~g~L~~~l   97 (97)
T TIGR00365        83 IIMEMYQSGELQTLL   97 (97)
T ss_pred             HHHHHHHCcChHHhC
Confidence            999999999999875

The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.

>TIGR02189 GlrX-like_plant Glutaredoxin-like family

Probab=99.93  E-value=6.7e-26  Score=169.95  Aligned_cols=92  Identities=30%  Similarity=0.569  Sum_probs=85.6

Q ss_pred             HHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHh---HHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221           36 DEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES---IRNGIKEYTSWPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        36 ~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~---~~~eL~~~~g~~tvPqvFI~G~~IGG~d  112 (205)
                      ++++++++|+||++     ++||+|.+++++|++++++|+++||+.+++   .++++.+++|++++|||||||++|||+|
T Consensus         2 ~~~i~~~~Vvvysk-----~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~d   76 (99)
T TIGR02189         2 RRMVSEKAVVIFSR-----SSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLE   76 (99)
T ss_pred             hhhhccCCEEEEEC-----CCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHH
Confidence            57889999999999     999999999999999999999999998754   5667888889999999999999999999


Q ss_pred             HHHHHHhcccHHHHHhhcCC
Q psy221          113 ILLKLHQSGELVEQLEKGDQ  132 (205)
Q Consensus       113 el~~l~e~GeL~~~L~~~~~  132 (205)
                      ++.+|+++|+|+++|+.+++
T Consensus        77 dl~~l~~~G~L~~~l~~~~~   96 (99)
T TIGR02189        77 NVMALHISGSLVPMLKQAGA   96 (99)
T ss_pred             HHHHHHHcCCHHHHHHHhCc
Confidence            99999999999999998765

This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.

>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins

Probab=99.93  E-value=7.1e-26  Score=166.58  Aligned_cols=90  Identities=56%  Similarity=1.118  Sum_probs=86.6

Q ss_pred             HHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHH
Q psy221           35 IDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDIL  114 (205)
Q Consensus        35 l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del  114 (205)
                      +++++++++||||++|+++.++||+|.+++++|+++|++|+++||..+++++++|.+++|+.++|+|||||++|||++++
T Consensus         1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l   80 (90)
T cd03028           1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVNGELVGGCDIV   80 (90)
T ss_pred             ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEECCEEEeCHHHH
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccHH
Q psy221          115 LKLHQSGELV  124 (205)
Q Consensus       115 ~~l~e~GeL~  124 (205)
                      ++||++|+|+
T Consensus        81 ~~l~~~g~L~   90 (90)
T cd03028          81 KEMHESGELQ   90 (90)
T ss_pred             HHHHHcCCcC
Confidence            9999999984

The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein

>PHA03050 glutaredoxin; Provisional

Probab=99.93  E-value=1.9e-25  Score=170.20  Aligned_cols=97  Identities=22%  Similarity=0.416  Sum_probs=91.8

Q ss_pred             HHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCC---CeEEEEccC---CHhHHHHHHHHhCCCCccEEeeCC
Q psy221           32 QKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV---PYDSHDVLK---DESIRNGIKEYTSWPTIPQVFING  105 (205)
Q Consensus        32 ~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV---~~~e~DI~~---d~~~~~eL~~~~g~~tvPqvFI~G  105 (205)
                      ++++++++++++|+||++     ++||||.+|+++|++++|   +|+++||+.   +.+.+++|.+.+|+.+||+|||||
T Consensus         3 ~~~v~~~i~~~~V~vys~-----~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g   77 (108)
T PHA03050          3 EEFVQQRLANNKVTIFVK-----FTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGK   77 (108)
T ss_pred             HHHHHHHhccCCEEEEEC-----CCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECC
Confidence            578899999999999999     999999999999999999   799999986   578899999999999999999999


Q ss_pred             eEeechhHHHHHHhcccHHHHHhhcCCc
Q psy221          106 EFVGGCDILLKLHQSGELVEQLEKGDQK  133 (205)
Q Consensus       106 ~~IGG~del~~l~e~GeL~~~L~~~~~~  133 (205)
                      ++|||+||+++|+++|+|.++|+.+++.
T Consensus        78 ~~iGG~ddl~~l~~~g~L~~~l~~~~~~  105 (108)
T PHA03050         78 TSIGGYSDLLEIDNMDALGDILSSIGVL  105 (108)
T ss_pred             EEEeChHHHHHHHHcCCHHHHHHHcccc
Confidence            9999999999999999999999988764

>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.8e-25  Score=166.31  Aligned_cols=102  Identities=50%  Similarity=0.942  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCC-CCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE
Q psy221           29 TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHD-VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF  107 (205)
Q Consensus        29 ~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~g-V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~  107 (205)
                      ++..+++++.++.++||||+||+|..|.|.|+.++.++|..+| ++|..+||..|+++|+.|+++++|||+||+||+|++
T Consensus         2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~GEf   81 (105)
T COG0278           2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNGEF   81 (105)
T ss_pred             chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCCCCCceeeECCEE
Confidence            4578899999999999999999999999999999999999999 899999999999999999999999999999999999


Q ss_pred             eechhHHHHHHhcccHHHHHhhc
Q psy221          108 VGGCDILLKLHQSGELVEQLEKG  130 (205)
Q Consensus       108 IGG~del~~l~e~GeL~~~L~~~  130 (205)
                      |||.|.+.+|+++|+|+++|+.+
T Consensus        82 vGG~DIv~Em~q~GELq~~l~~~  104 (105)
T COG0278          82 VGGCDIVREMYQSGELQTLLKEA  104 (105)
T ss_pred             eccHHHHHHHHHcchHHHHHHhc
Confidence            99999999999999999999864

>PTZ00062 glutaredoxin; Provisional

Probab=99.92  E-value=6.1e-25  Score=184.43  Aligned_cols=102  Identities=37%  Similarity=0.774  Sum_probs=98.5

Q ss_pred             ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE
Q psy221           28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF  107 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~  107 (205)
                      .+++.+++++++++++||||+||++..|+||+|.+++++|++++|+|+++||..+++.+++|++++|++|+|||||||++
T Consensus        99 ~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~G~~  178 (204)
T PTZ00062         99 SEDTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVNGEL  178 (204)
T ss_pred             HHHHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEECCEE
Confidence            55699999999999999999999999899999999999999999999999999999999999999999999999999999


Q ss_pred             eechhHHHHHHhcccHHHHHhh
Q psy221          108 VGGCDILLKLHQSGELVEQLEK  129 (205)
Q Consensus       108 IGG~del~~l~e~GeL~~~L~~  129 (205)
                      |||+|++++|+++|+|.++|..
T Consensus       179 IGG~d~l~~l~~~G~L~~~l~~  200 (204)
T PTZ00062        179 IGGHDIIKELYESNSLRKVIPD  200 (204)
T ss_pred             EcChHHHHHHHHcCChhhhhhh
Confidence            9999999999999999999965

>KOG1752|consensus

Probab=99.90  E-value=4.1e-23  Score=156.42  Aligned_cols=97  Identities=31%  Similarity=0.576  Sum_probs=89.7

Q ss_pred             HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC---HhHHHHHHHHhCCCCccEEeeCCeE
Q psy221           31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD---ESIRNGIKEYTSWPTIPQVFINGEF  107 (205)
Q Consensus        31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d---~~~~~eL~~~~g~~tvPqvFI~G~~  107 (205)
                      ..+++++++.+++||||++     ++||+|.++|.+|..+++++..++++.+   .+++++|.+++|++|+|+|||+|++
T Consensus         3 ~~~~v~~~i~~~~VVifSK-----s~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~   77 (104)
T KOG1752|consen    3 AEAKVRKMISENPVVIFSK-----SSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKF   77 (104)
T ss_pred             HHHHHHHHhhcCCEEEEEC-----CcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEE
Confidence            4567899999999999999     9999999999999999999888888765   5889999999999999999999999


Q ss_pred             eechhHHHHHHhcccHHHHHhhcCC
Q psy221          108 VGGCDILLKLHQSGELVEQLEKGDQ  132 (205)
Q Consensus       108 IGG~del~~l~e~GeL~~~L~~~~~  132 (205)
                      |||.+++++||.+|+|.++|+.+++
T Consensus        78 iGG~~dl~~lh~~G~L~~~l~~~~~  102 (104)
T KOG1752|consen   78 IGGASDLMALHKSGELVPLLKEAGA  102 (104)
T ss_pred             EcCHHHHHHHHHcCCHHHHHHHhhc
Confidence            9999999999999999999998754

>PRK10638 glutaredoxin 3; Provisional

Probab=99.88  E-value=5.6e-22  Score=143.17  Aligned_cols=82  Identities=27%  Similarity=0.533  Sum_probs=79.0

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhcc
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSG  121 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~G  121 (205)
                      .+|+||++     ++||+|.+|+++|+++|++|+++||+.+++.++++.+++|..++|+||+||++|||++++.+++++|
T Consensus         2 ~~v~ly~~-----~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~~~~g   76 (83)
T PRK10638          2 ANVEIYTK-----ATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYALDARG   76 (83)
T ss_pred             CcEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHcC
Confidence            47999999     9999999999999999999999999999988999999999999999999999999999999999999


Q ss_pred             cHHHHHh
Q psy221          122 ELVEQLE  128 (205)
Q Consensus       122 eL~~~L~  128 (205)
                      +|.++|+
T Consensus        77 ~l~~~~~   83 (83)
T PRK10638         77 GLDPLLK   83 (83)
T ss_pred             CHHHHhC
Confidence            9999884

>TIGR02181 GRX_bact Glutaredoxin, GrxC family

Probab=99.87  E-value=6e-22  Score=141.06  Aligned_cols=79  Identities=30%  Similarity=0.576  Sum_probs=76.5

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhcccH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGEL  123 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~GeL  123 (205)
                      |+||++     ++||+|.+|+++|+++|++|+++||+.+++.++++.+++|..++|+|||||++|||++++.+|+++|+|
T Consensus         1 v~ly~~-----~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~~~~g~l   75 (79)
T TIGR02181         1 VTIYTK-----PYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYALDREGKL   75 (79)
T ss_pred             CEEEec-----CCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHHHHcCCh
Confidence            689999     999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH
Q psy221          124 VEQL  127 (205)
Q Consensus       124 ~~~L  127 (205)
                      +++|
T Consensus        76 ~~~l   79 (79)
T TIGR02181        76 DPLL   79 (79)
T ss_pred             hhhC
Confidence            9875

This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.

>KOG0911|consensus

Probab=99.86  E-value=2.1e-21  Score=163.32  Aligned_cols=99  Identities=48%  Similarity=1.004  Sum_probs=95.6

Q ss_pred             HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeec
Q psy221           31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG  110 (205)
Q Consensus        31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG  110 (205)
                      .++.++.+++.++|+||+||+|..|.|.+.+++..+|++++|+|..+||..|+++|+.|++++.|||+|||||+|+++||
T Consensus       128 ~~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GEFiGG  207 (227)
T KOG0911|consen  128 LDNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGEFIGG  207 (227)
T ss_pred             HHHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCEeccC
Confidence            34489999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhcccHHHHHhh
Q psy221          111 CDILLKLHQSGELVEQLEK  129 (205)
Q Consensus       111 ~del~~l~e~GeL~~~L~~  129 (205)
                      .|.+++|+++|+|...|++
T Consensus       208 lDIl~~m~~~geL~~~l~~  226 (227)
T KOG0911|consen  208 LDILKEMHEKGELVYTLKE  226 (227)
T ss_pred             cHHHHHHhhcccHHHHhhc
Confidence            9999999999999999975

>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif

Probab=99.86  E-value=2.2e-21  Score=144.03  Aligned_cols=86  Identities=19%  Similarity=0.340  Sum_probs=81.8

Q ss_pred             cEEEEEeeCCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC----CCccEEeeCCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW----PTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~----~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .|+||++|+++. ..-..|+.++++|++++|+|+++||++|++.+++|++.++.    +++|||||+|+||||+||+.+|
T Consensus         1 ~i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl~~l   80 (92)
T cd03030           1 VIKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAFFEA   80 (92)
T ss_pred             CEEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHHHHH
Confidence            389999999998 88999999999999999999999999999999999999864    8999999999999999999999


Q ss_pred             HhcccHHHHHh
Q psy221          118 HQSGELVEQLE  128 (205)
Q Consensus       118 ~e~GeL~~~L~  128 (205)
                      +++|+|.++|+
T Consensus        81 ~e~g~L~~lLk   91 (92)
T cd03030          81 KENNTLEEFLK   91 (92)
T ss_pred             HhCCCHHHHhC
Confidence            99999999985

The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.

>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.83  E-value=3.9e-20  Score=129.78  Aligned_cols=74  Identities=32%  Similarity=0.616  Sum_probs=70.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCC-CccEEeeCCeEeechhHHHHHHhcc
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP-TIPQVFINGEFVGGCDILLKLHQSG  121 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~-tvPqvFI~G~~IGG~del~~l~e~G  121 (205)
                      +|+||++     ++||+|.+|+++|++++|+|+++||+.+++.++++.+.+|.. ++|+|||||++|||++++++|+++|
T Consensus         1 ~i~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~~~~g   75 (75)
T cd03418           1 KVEIYTK-----PNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYALERKG   75 (75)
T ss_pred             CEEEEeC-----CCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHHHhCc
Confidence            5899999     999999999999999999999999999999999999988887 9999999999999999999999987

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i

>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions

Probab=99.83  E-value=4.7e-20  Score=129.81  Aligned_cols=73  Identities=26%  Similarity=0.421  Sum_probs=70.0

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      .+|+||++     ++||+|.+|+++|+++||+|+++||.++++.+++|.+++|..++|+|||||++|||++|+.+|++
T Consensus         1 ~~v~ly~~-----~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~~~~~~~   73 (73)
T cd03027           1 GRVTIYSR-----LGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGSSVVPQIFFNEKLVGGLTDLKSLEE   73 (73)
T ss_pred             CEEEEEec-----CCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHhhcC
Confidence            36999999     99999999999999999999999999999999999999999999999999999999999999864

GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.

>TIGR02180 GRX_euk Glutaredoxin

Probab=99.80  E-value=2.5e-19  Score=127.59  Aligned_cols=79  Identities=39%  Similarity=0.676  Sum_probs=72.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCC--eEEEEccCC---HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVP--YDSHDVLKD---ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~--~~e~DI~~d---~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      |++|++     ++||+|.+++.+|++++++  |+.++|+.+   ++.++++.+.+|..++|+|||||++|||++++.+++
T Consensus         1 V~~f~~-----~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~   75 (84)
T TIGR02180         1 VVVFSK-----SYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY   75 (84)
T ss_pred             CEEEEC-----CCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence            689999     9999999999999999998  888888764   566778999999999999999999999999999999


Q ss_pred             hcccHHHHH
Q psy221          119 QSGELVEQL  127 (205)
Q Consensus       119 e~GeL~~~L  127 (205)
                      ++|+|+++|
T Consensus        76 ~~g~l~~~~   84 (84)
T TIGR02180        76 KSGKLAELL   84 (84)
T ss_pred             HcCChhhhC
Confidence            999999875

This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.

>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=2.1e-19  Score=129.84  Aligned_cols=76  Identities=37%  Similarity=0.660  Sum_probs=70.7

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhc
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQS  120 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~  120 (205)
                      .|+||++     ++||||.++|++|+++|++|+++|+++++  +.++.+++..|.+++|||||||++|||.+++.+++..
T Consensus         2 ~v~iyt~-----~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~~~~igg~~d~~~~~~~   76 (80)
T COG0695           2 NVTIYTK-----PGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIGGKHVGGCDDLDALEAK   76 (80)
T ss_pred             CEEEEEC-----CCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEECCEEEeCcccHHHHHhh
Confidence            6899999     99999999999999999999999999887  7777777777999999999999999999999999988


Q ss_pred             ccH
Q psy221          121 GEL  123 (205)
Q Consensus       121 GeL  123 (205)
                      +.|
T Consensus        77 ~~l   79 (80)
T COG0695          77 GKL   79 (80)
T ss_pred             ccC
Confidence            876

>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.79  E-value=4.9e-19  Score=125.86  Aligned_cols=78  Identities=37%  Similarity=0.664  Sum_probs=72.4

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC---HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD---ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d---~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      +|++|++     ++||+|.+++++|++++++|++++++.+   .+.++++++++|.+++|+||++|++|||++++.++.+
T Consensus         1 ~v~~y~~-----~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~   75 (82)
T cd03419           1 PVVVFSK-----SYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK   75 (82)
T ss_pred             CEEEEEc-----CCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence            5899999     9999999999999999999998888765   5567889999999999999999999999999999999


Q ss_pred             cccHHH
Q psy221          120 SGELVE  125 (205)
Q Consensus       120 ~GeL~~  125 (205)
                      +|+|++
T Consensus        76 ~g~l~~   81 (82)
T cd03419          76 SGKLVK   81 (82)
T ss_pred             cCCccC
Confidence            999975

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes

>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria

Probab=99.78  E-value=1.4e-18  Score=121.89  Aligned_cols=70  Identities=34%  Similarity=0.579  Sum_probs=65.0

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +|+||++     ++||+|.+|+++|++++|+|+++||+.++. .++++.++|..++|+|||||++|||++++.++.
T Consensus         2 ~v~lys~-----~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~-~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l   71 (72)
T cd03029           2 SVSLFTK-----PGCPFCARAKAALQENGISYEEIPLGKDIT-GRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYF   71 (72)
T ss_pred             eEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEECCCChh-HHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHh
Confidence            6999999     999999999999999999999999998874 567888889999999999999999999998874

PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.

>TIGR02190 GlrX-dom Glutaredoxin-family domain

Probab=99.77  E-value=2.1e-18  Score=123.55  Aligned_cols=75  Identities=31%  Similarity=0.488  Sum_probs=67.8

Q ss_pred             HhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           38 MVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        38 ~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +.++++|+||++     ++||+|.+++++|+++||+|+++||+.+++. +++++.+|..++|+|||||++|||++++.++
T Consensus         4 ~~~~~~V~ly~~-----~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~-~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~   77 (79)
T TIGR02190         4 ARKPESVVVFTK-----PGCPFCAKAKATLKEKGYDFEEIPLGNDARG-RSLRAVTGATTVPQVFIGGKLIGGSDELEAY   77 (79)
T ss_pred             cCCCCCEEEEEC-----CCCHhHHHHHHHHHHcCCCcEEEECCCChHH-HHHHHHHCCCCcCeEEECCEEEcCHHHHHHH
Confidence            456789999999     9999999999999999999999999887654 5677788999999999999999999999876


Q ss_pred             H
Q psy221          118 H  118 (205)
Q Consensus       118 ~  118 (205)
                      .
T Consensus        78 l   78 (79)
T TIGR02190        78 L   78 (79)
T ss_pred             h
Confidence            3

This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.

>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain

Probab=99.75  E-value=1.1e-17  Score=114.21  Aligned_cols=72  Identities=43%  Similarity=0.874  Sum_probs=69.1

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      +|++|++     ++||+|.+++.+|++++++|+++|+..+++.+++|++++|..++|++|+||++|||++++++|++
T Consensus         1 ~v~ly~~-----~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~~~   72 (72)
T cd02066           1 KVVVFSK-----STCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGEFIGGYDDLKALHE   72 (72)
T ss_pred             CEEEEEC-----CCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHhhC
Confidence            5899999     99999999999999999999999999999999999999999999999999999999999999874

GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which

>TIGR02183 GRXA Glutaredoxin, GrxA family

Probab=99.75  E-value=8.8e-18  Score=122.45  Aligned_cols=73  Identities=22%  Similarity=0.464  Sum_probs=65.8

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCC-----CCeEEEEccCCHhHHHHHHHHhCC--CCccEEeeCCeEeechhHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHD-----VPYDSHDVLKDESIRNGIKEYTSW--PTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~g-----V~~~e~DI~~d~~~~~eL~~~~g~--~tvPqvFI~G~~IGG~del~~  116 (205)
                      |+||++     ++||+|.+|+++|++++     ++|+++||..+...+++|.+.+|.  .++|+|||||++|||++++.+
T Consensus         2 V~vys~-----~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~   76 (86)
T TIGR02183         2 VVIFGR-----PGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQ   76 (86)
T ss_pred             EEEEeC-----CCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHH
Confidence            799999     99999999999999984     679999998776667788888886  799999999999999999999


Q ss_pred             HHhcc
Q psy221          117 LHQSG  121 (205)
Q Consensus       117 l~e~G  121 (205)
                      +++++
T Consensus        77 ~~~~~   81 (86)
T TIGR02183        77 LVKEN   81 (86)
T ss_pred             HHHhc
Confidence            98764

This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.

>PRK11200 grxA glutaredoxin 1; Provisional

Probab=99.75  E-value=1.2e-17  Score=120.82  Aligned_cols=73  Identities=21%  Similarity=0.459  Sum_probs=67.4

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHh-----CCCCeEEEEccCCHhHHHHHHHHhCC--CCccEEeeCCeEeechhHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRM-----HDVPYDSHDVLKDESIRNGIKEYTSW--PTIPQVFINGEFVGGCDILL  115 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~-----~gV~~~e~DI~~d~~~~~eL~~~~g~--~tvPqvFI~G~~IGG~del~  115 (205)
                      +|+||++     ++||+|.+|+++|++     .+++|+++||+.++..+++|.+..|+  .++|+|||||++|||++|+.
T Consensus         2 ~v~iy~~-----~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~   76 (85)
T PRK11200          2 FVVIFGR-----PGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFE   76 (85)
T ss_pred             EEEEEeC-----CCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHH
Confidence            6999999     999999999999999     89999999999887778889988886  79999999999999999999


Q ss_pred             HHHhc
Q psy221          116 KLHQS  120 (205)
Q Consensus       116 ~l~e~  120 (205)
                      ++++.
T Consensus        77 ~~~~~   81 (85)
T PRK11200         77 AYVKE   81 (85)
T ss_pred             HHHHH
Confidence            98764

>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=99.70  E-value=6.3e-17  Score=109.66  Aligned_cols=60  Identities=40%  Similarity=0.773  Sum_probs=58.5

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I  108 (205)
                      |+||++     ++||+|.+++++|+++|++|+++||+.+++.+++|++++|..++|+|||||++|
T Consensus         1 V~vy~~-----~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~g~~I   60 (60)
T PF00462_consen    1 VVVYTK-----PGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFIDGKFI   60 (60)
T ss_dssp             EEEEES-----TTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred             cEEEEc-----CCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEECCEEC
Confidence            789999     999999999999999999999999999999999999999999999999999987

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....

>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional

Probab=99.66  E-value=5.1e-16  Score=142.48  Aligned_cols=85  Identities=21%  Similarity=0.436  Sum_probs=74.1

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH--------HhCCCCccEEeeCCeEeechhH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE--------YTSWPTIPQVFINGEFVGGCDI  113 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~--------~~g~~tvPqvFI~G~~IGG~de  113 (205)
                      .+|+||++     ++||+|.++|++|+++||+|+++||+.++...+.+.+        .+|..++|||||||++|||+++
T Consensus         2 ~~V~vys~-----~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~   76 (410)
T PRK12759          2 VEVRIYTK-----TNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDN   76 (410)
T ss_pred             CcEEEEeC-----CCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchH
Confidence            47999999     9999999999999999999999999988754443222        3588999999999999999999


Q ss_pred             HHHHHhcccHHHHHhhcCCc
Q psy221          114 LLKLHQSGELVEQLEKGDQK  133 (205)
Q Consensus       114 l~~l~e~GeL~~~L~~~~~~  133 (205)
                      +++  .+|+|.++|++.+..
T Consensus        77 l~~--~~g~l~~~~~~~~~~   94 (410)
T PRK12759         77 LMA--RAGEVIARVKGSSLT   94 (410)
T ss_pred             HHH--HhCCHHHHhcCCccc
Confidence            988  899999999987653

>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH

Probab=99.59  E-value=4.7e-15  Score=104.12  Aligned_cols=63  Identities=14%  Similarity=0.344  Sum_probs=58.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe-Eeechh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE-FVGGCD  112 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~-~IGG~d  112 (205)
                      |+||++     ++||+|.+++++|+++||+|+++||..+++.++++++. |..++|+|+++|+ +|||++
T Consensus         1 v~ly~~-----~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~-g~~~vP~v~~~g~~~~~G~~   64 (72)
T TIGR02194         1 ITVYSK-----NNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQ-GFRQVPVIVADGDLSWSGFR   64 (72)
T ss_pred             CEEEeC-----CCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHc-CCcccCEEEECCCcEEeccC
Confidence            589999     99999999999999999999999999999999999864 8899999999775 999997

NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.

>PRK10329 glutaredoxin-like protein; Provisional

Probab=99.57  E-value=1.6e-14  Score=104.44  Aligned_cols=64  Identities=9%  Similarity=0.252  Sum_probs=60.7

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d  112 (205)
                      +|+||++     ++||+|.+++++|+++||+|+++||+.+++..++++. .|..++|+|++++..++|++
T Consensus         2 ~v~lYt~-----~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~-~g~~~vPvv~i~~~~~~Gf~   65 (81)
T PRK10329          2 RITIYTR-----NDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRA-QGFRQLPVVIAGDLSWSGFR   65 (81)
T ss_pred             EEEEEeC-----CCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHH-cCCCCcCEEEECCEEEecCC
Confidence            6999999     9999999999999999999999999999998888877 48899999999999999997

>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised

Probab=99.48  E-value=2.2e-13  Score=102.42  Aligned_cols=86  Identities=24%  Similarity=0.432  Sum_probs=67.8

Q ss_pred             cEEEEEeeCCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC---------CCCccEEeeCCeEeechh
Q psy221           43 KVVVFMKGVPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS---------WPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        43 ~VvlYsk~~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g---------~~tvPqvFI~G~~IGG~d  112 (205)
                      .|.||.+|+.+. .-=..+.++..+|+.++|+|+++||.++++.|+.+++..|         .+-.||||+|++|+|++|
T Consensus         2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~Gdye   81 (99)
T PF04908_consen    2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCGDYE   81 (99)
T ss_dssp             SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEEEHH
T ss_pred             EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEeeHH
Confidence            578898876544 3345789999999999999999999999999999999873         334589999999999999


Q ss_pred             HHHHHHhcccHHHHHh
Q psy221          113 ILLKLHQSGELVEQLE  128 (205)
Q Consensus       113 el~~l~e~GeL~~~L~  128 (205)
                      ++.+++|+++|.+.|+
T Consensus        82 ~f~ea~E~~~L~~fL~   97 (99)
T PF04908_consen   82 DFEEANENGELEEFLK   97 (99)
T ss_dssp             HHHHHHCTT-HHHHHT
T ss_pred             HHHHHHhhCHHHHHhC
Confidence            9999999999999986

SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.

>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family

Probab=99.36  E-value=4.6e-12  Score=86.73  Aligned_cols=65  Identities=23%  Similarity=0.407  Sum_probs=60.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d  112 (205)
                      .|++|+.     ++||+|.+++.+|++.+++|.++|++.+++..+++.+..|..++|.++++|+.+.|++
T Consensus         1 ~i~lf~~-----~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~   65 (74)
T TIGR02196         1 KVKVYTT-----PWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIGHKIIVGFD   65 (74)
T ss_pred             CEEEEcC-----CCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEECCEEEeeCC
Confidence            3789999     9999999999999999999999999999888888888889999999999999998875

This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.

>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile

Probab=99.32  E-value=1.1e-11  Score=84.81  Aligned_cols=66  Identities=26%  Similarity=0.539  Sum_probs=61.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDI  113 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~de  113 (205)
                      +|++|+.     ++||+|.+++.+|++.+++|..+|++.++...+++.++.+..++|+|+++|+.++|.+.
T Consensus         1 ~v~l~~~-----~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~~~   66 (73)
T cd02976           1 EVTVYTK-----PDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGDEHLSGFRP   66 (73)
T ss_pred             CEEEEeC-----CCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECCEEEecCCH
Confidence            4899999     99999999999999999999999999988888899988888899999999999999874

In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou

>TIGR02200 GlrX_actino Glutaredoxin-like protein

Probab=99.22  E-value=7.9e-11  Score=81.98  Aligned_cols=65  Identities=20%  Similarity=0.406  Sum_probs=57.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh-CCCCccEEee-CCeEeechh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT-SWPTIPQVFI-NGEFVGGCD  112 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~-g~~tvPqvFI-~G~~IGG~d  112 (205)
                      +|+||+.     ++||+|.+++.+|++++++|+.+|++.++...+++.++. +..++|+|++ ||+.+...+
T Consensus         1 ~v~ly~~-----~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~   67 (77)
T TIGR02200         1 TITVYGT-----TWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS   67 (77)
T ss_pred             CEEEEEC-----CCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence            4899999     999999999999999999999999999988888888886 8889999977 567776554

This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.

>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)

Probab=98.99  E-value=1.2e-09  Score=74.76  Aligned_cols=58  Identities=19%  Similarity=0.338  Sum_probs=49.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEee
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVG  109 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IG  109 (205)
                      .|++|++     ++||+|.+++.+|+++     ++++..+|++.+++    +.+..|..++|+++|+|++++
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~----l~~~~~i~~vPti~i~~~~~~   64 (67)
T cd02973           2 NIEVFVS-----PTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPD----LADEYGVMSVPAIVINGKVEF   64 (67)
T ss_pred             EEEEEEC-----CCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHh----HHHHcCCcccCEEEECCEEEE
Confidence            5899999     9999999999999875     68899999987754    555678889999999999875

All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri

>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins

Probab=98.85  E-value=2.7e-08  Score=70.34  Aligned_cols=71  Identities=13%  Similarity=0.038  Sum_probs=60.0

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC--CeEeechhHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN--GEFVGGCDILLKLHQ  119 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~--G~~IGG~del~~l~e  119 (205)
                      ++||+.     +.||+|.+++.+|+.+|++|+++++..++...+++.++++..++|++..+  |..+.+.+.+.+..+
T Consensus         2 ~~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~   74 (77)
T cd03041           2 LELYEF-----EGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF   74 (77)
T ss_pred             ceEecC-----CCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence            679999     99999999999999999999999998776567788888888899999773  567788777766543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.75  E-value=4.5e-08  Score=65.13  Aligned_cols=68  Identities=16%  Similarity=0.140  Sum_probs=57.7

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .+|+.     ++||+|.+++.+|+.++++|+.++++.++....++++.++..++|.+.++|..++....+.+.
T Consensus         2 ~ly~~-----~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~y   69 (71)
T cd00570           2 KLYYF-----PGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEY   69 (71)
T ss_pred             EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            57888     899999999999999999999999876544333677788889999999999999988876654

In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma

>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2

Probab=98.74  E-value=1.1e-07  Score=66.69  Aligned_cols=69  Identities=20%  Similarity=0.468  Sum_probs=55.6

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC----CeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN----GEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~----G~~IGG~del~~l~  118 (205)
                      ++.||+.     +.||+|.+++.+|+..||+|++++++..  .+.++ +..+..++|++.++    |+.+.....+.+..
T Consensus         1 ~i~Ly~~-----~~~p~c~kv~~~L~~~gi~y~~~~~~~~--~~~~~-~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL   72 (77)
T cd03040           1 KITLYQY-----KTCPFCCKVRAFLDYHGIPYEVVEVNPV--SRKEI-KWSSYKKVPILRVESGGDGQQLVDSSVIISTL   72 (77)
T ss_pred             CEEEEEc-----CCCHHHHHHHHHHHHCCCceEEEECCch--hHHHH-HHhCCCccCEEEECCCCCccEEEcHHHHHHHH
Confidence            4789999     9999999999999999999999998542  23445 34678899999987    77787777776654


Q ss_pred             h
Q psy221          119 Q  119 (205)
Q Consensus       119 e  119 (205)
                      +
T Consensus        73 ~   73 (77)
T cd03040          73 K   73 (77)
T ss_pred             H
Confidence            3

Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.

>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E

Probab=98.68  E-value=1.6e-07  Score=64.99  Aligned_cols=68  Identities=12%  Similarity=0.237  Sum_probs=55.3

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHHHh
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKLHQ  119 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l~e  119 (205)
                      .||..     +.||+|.+++.+|...|++|++++++..+..  ...+..+..++|+++++ |..+++...+.+..+
T Consensus         2 ~Ly~~-----~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~--~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~   70 (71)
T cd03037           2 KLYIY-----EHCPFCVKARMIAGLKNIPVEQIILQNDDEA--TPIRMIGAKQVPILEKDDGSFMAESLDIVAFID   70 (71)
T ss_pred             ceEec-----CCCcHhHHHHHHHHHcCCCeEEEECCCCchH--HHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence            47888     8999999999999999999999988755322  22345677899999997 889999998887644

coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.

>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC

Probab=98.51  E-value=1.5e-07  Score=71.72  Aligned_cols=49  Identities=16%  Similarity=0.388  Sum_probs=43.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPT   97 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~t   97 (205)
                      |+||+.     ++||+|++|+++|+++|++|+++|+..++..+++|.++.+...
T Consensus         1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~~~~~~~   49 (111)
T cd03036           1 LKFYEY-----PKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKEELKKWLEKSG   49 (111)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHcCCceEEecccCCcccHHHHHHHHHHcC
Confidence            579999     9999999999999999999999999999888888887665433

Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.50  E-value=6.8e-07  Score=84.14  Aligned_cols=115  Identities=17%  Similarity=0.138  Sum_probs=76.8

Q ss_pred             cCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCC-----CCeEEEEccCCHhHHHHHHHHhCC
Q psy221           21 NAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHD-----VPYDSHDVLKDESIRNGIKEYTSW   95 (205)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~g-----V~~~e~DI~~d~~~~~eL~~~~g~   95 (205)
                      +......+++..+.++++-+...|.+|.+     ++||+|..|++.++++.     |..+.+|..+.++    +.+..+.
T Consensus        98 ~~~~~~l~~~~~~~~~~~~~~~~i~~f~~-----~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~----~~~~~~v  168 (515)
T TIGR03140        98 GGHGPKLDEGIIDRIRRLNGPLHFETYVS-----LTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD----EVEALGI  168 (515)
T ss_pred             cCCCCCCCHHHHHHHHhcCCCeEEEEEEe-----CCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH----HHHhcCC
Confidence            33345568888888888878888999999     99999999999997664     4455555544443    3344577


Q ss_pred             CCccEEeeCCeEee-chhHHHHHHhcccHHHH----H--hhcCCccccceeecccCCC
Q psy221           96 PTIPQVFINGEFVG-GCDILLKLHQSGELVEQ----L--EKGDQKRKQFILINYISGD  146 (205)
Q Consensus        96 ~tvPqvFI~G~~IG-G~del~~l~e~GeL~~~----L--~~~~~~~~~~~~~~~gcGg  146 (205)
                      .+||.+||||+.++ |.....++.+  .|.+.    .  .......+|.++||+|.+|
T Consensus       169 ~~VP~~~i~~~~~~~g~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~dVvIIGgGpAG  224 (515)
T TIGR03140       169 QGVPAVFLNGEEFHNGRMDLAELLE--KLEETAGVEAASALEQLDPYDVLVVGGGPAG  224 (515)
T ss_pred             cccCEEEECCcEEEecCCCHHHHHH--HHhhccCcccchhccccCCCCEEEECCCHHH
Confidence            79999999997653 3333322211  11111    0  0122457889999999987

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.45  E-value=1.2e-06  Score=82.44  Aligned_cols=117  Identities=17%  Similarity=0.189  Sum_probs=78.2

Q ss_pred             cCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCC
Q psy221           21 NAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSW   95 (205)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~   95 (205)
                      +......+++..+.++++-+...|.+|.+     ++||+|..+++.+++.     .|..+-+|..+.++.    .+..+.
T Consensus        97 ~~~~~~l~~~~~~~i~~~~~~~~i~~fv~-----~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~----~~~~~v  167 (517)
T PRK15317         97 GGHPPKLDQEVIEQIKALDGDFHFETYVS-----LSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDE----VEARNI  167 (517)
T ss_pred             cCCCCCCCHHHHHHHHhcCCCeEEEEEEc-----CCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhH----HHhcCC
Confidence            34445668889999998888888999999     9999999999998765     455666666555543    334577


Q ss_pred             CCccEEeeCCeEee-chh---HHHHHHhcc-cHHHHHhhcCCccccceeecccCCC
Q psy221           96 PTIPQVFINGEFVG-GCD---ILLKLHQSG-ELVEQLEKGDQKRKQFILINYISGD  146 (205)
Q Consensus        96 ~tvPqvFI~G~~IG-G~d---el~~l~e~G-eL~~~L~~~~~~~~~~~~~~~gcGg  146 (205)
                      .+||.+||||+.+. |..   ++.+...+. .....-.......+|.++||+|.+|
T Consensus       168 ~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaG  223 (517)
T PRK15317        168 MAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAG  223 (517)
T ss_pred             cccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHH
Confidence            79999999997653 322   222222211 0000000122346899999999987

>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx

Probab=98.44  E-value=3.1e-07  Score=68.82  Aligned_cols=48  Identities=23%  Similarity=0.446  Sum_probs=42.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP   96 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~   96 (205)
                      |+||++     ++|++|++|+++|+++|++|+++||..++...++|.++.+..
T Consensus         1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~~   48 (105)
T cd02977           1 ITIYGN-----PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAKL   48 (105)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHhc
Confidence            579999     999999999999999999999999998887788888876543

ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.

>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.42  E-value=1.6e-06  Score=63.00  Aligned_cols=71  Identities=13%  Similarity=0.225  Sum_probs=58.7

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKL  117 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l  117 (205)
                      ...++||+.     +.||+|.+++.+|+.+|++|+.++++... ..+++.+.+...++|++.++ |..+.....+.+.
T Consensus        16 ~~~~~Ly~~-----~~sp~~~kv~~~L~~~gl~~~~~~v~~~~-~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~y   87 (89)
T cd03055          16 PGIIRLYSM-----RFCPYAQRARLVLAAKNIPHEVININLKD-KPDWFLEKNPQGKVPALEIDEGKVVYESLIICEY   87 (89)
T ss_pred             CCcEEEEeC-----CCCchHHHHHHHHHHcCCCCeEEEeCCCC-CcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHh
Confidence            456999999     99999999999999999999999987543 23557777788899999998 7888777766654

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega

>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E

Probab=98.41  E-value=1.9e-06  Score=59.31  Aligned_cols=69  Identities=17%  Similarity=0.265  Sum_probs=54.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++||+.     ++||+|.+++.+|+..|++|++++++.... ..++++.....++|.+..+|..+.....+.+..
T Consensus         1 ~~ly~~-----~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL   69 (73)
T cd03059           1 MTLYSG-----PDDVYSHRVRIVLAEKGVSVEIIDVDPDNP-PEDLAELNPYGTVPTLVDRDLVLYESRIIMEYL   69 (73)
T ss_pred             CEEEEC-----CCChhHHHHHHHHHHcCCccEEEEcCCCCC-CHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            368988     999999999999999999999998875422 356667777789999988887777666665543

coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.

>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs

Probab=98.38  E-value=2.2e-06  Score=59.29  Aligned_cols=66  Identities=11%  Similarity=0.240  Sum_probs=54.0

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC-CeEeechhHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLK  116 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~  116 (205)
                      ++|+.     ++||+|.+++.+|+.+|++|+.++++.... .+++.++....++|.+..+ |..+.....+.+
T Consensus         2 ~ly~~-----~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~-~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~   68 (71)
T cd03060           2 ILYSF-----RRCPYAMRARMALLLAGITVELREVELKNK-PAEMLAASPKGTVPVLVLGNGTVIEESLDIMR   68 (71)
T ss_pred             EEEec-----CCCcHHHHHHHHHHHcCCCcEEEEeCCCCC-CHHHHHHCCCCCCCEEEECCCcEEecHHHHHH
Confidence            68888     999999999999999999999998875432 3577778888899999996 887766665544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r

>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides

Probab=98.36  E-value=1.7e-06  Score=63.43  Aligned_cols=70  Identities=20%  Similarity=0.307  Sum_probs=54.6

Q ss_pred             HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCC
Q psy221           31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFING  105 (205)
Q Consensus        31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G  105 (205)
                      ..+.++++-+.-.|.+|..     ++|++|..+++++++.     ++++..+|++.+++    +.+..|-..+|.++|||
T Consensus         3 ~~~~~~~l~~pv~i~~F~~-----~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e----~a~~~~V~~vPt~vidG   73 (89)
T cd03026           3 LLEQIRRLNGPINFETYVS-----LSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQD----EVEERGIMSVPAIFLNG   73 (89)
T ss_pred             HHHHHHhcCCCEEEEEEEC-----CCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHH----HHHHcCCccCCEEEECC
Confidence            3455666555668899999     9999999999998654     68899999987753    34455777899999999


Q ss_pred             eEee
Q psy221          106 EFVG  109 (205)
Q Consensus       106 ~~IG  109 (205)
                      +.++
T Consensus        74 ~~~~   77 (89)
T cd03026          74 ELFG   77 (89)
T ss_pred             EEEE
Confidence            8664

AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.

>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors

Probab=98.34  E-value=4.7e-06  Score=59.82  Aligned_cols=53  Identities=23%  Similarity=0.469  Sum_probs=43.7

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCC----CCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCC
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHD----VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFING  105 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~g----V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G  105 (205)
                      +|++|++     ++|+.|..|+++|+...    +.++.+||+.|++    |.+.++. .+|++.++|
T Consensus         1 ~l~l~~k-----~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~----l~~~Y~~-~IPVl~~~~   57 (81)
T PF05768_consen    1 TLTLYTK-----PGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPE----LFEKYGY-RIPVLHIDG   57 (81)
T ss_dssp             -EEEEE------SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHH----HHHHSCT-STSEEEETT
T ss_pred             CEEEEcC-----CCCChHHHHHHHHHHHHhhcCceEEEEECCCCHH----HHHHhcC-CCCEEEEcC
Confidence            5899999     99999999999999654    5689999998876    5556664 799999999

Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.

>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A

Probab=98.32  E-value=2.8e-06  Score=59.58  Aligned_cols=68  Identities=18%  Similarity=0.304  Sum_probs=58.6

Q ss_pred             EEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           46 VFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        46 lYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      ||..     +.||+|.+++-+|+.+||+|+.+++..... ..++.++....++|.+..||..+.+...+.+..+
T Consensus         1 Ly~~-----~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~-~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~   68 (75)
T PF13417_consen    1 LYGF-----PGSPYSQKVRLALEEKGIPYELVPVDPEEK-RPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLE   68 (75)
T ss_dssp             EEEE-----TTSHHHHHHHHHHHHHTEEEEEEEEBTTST-SHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHH
T ss_pred             CCCc-----CCChHHHHHHHHHHHcCCeEEEeccCcccc-hhHHHhhcccccceEEEECCEEEeCHHHHHHHHH
Confidence            5777     899999999999999999999999875543 6778888888999999999999998887776543

...

>PRK01655 spxA transcriptional regulator Spx; Reviewed

Probab=98.30  E-value=1.6e-06  Score=68.10  Aligned_cols=46  Identities=22%  Similarity=0.459  Sum_probs=42.1

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      |+||+.     ++|++|++|+++|+++||+|+++|+..++..+++|.++..
T Consensus         2 i~iY~~-----~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~   47 (131)
T PRK01655          2 VTLFTS-----PSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILR   47 (131)
T ss_pred             EEEEeC-----CCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHH
Confidence            789999     9999999999999999999999999999888888877653

>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=98.30  E-value=2.8e-06  Score=58.18  Aligned_cols=68  Identities=12%  Similarity=0.083  Sum_probs=53.3

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l  117 (205)
                      .||+.     ++||+|.+++.+|+..|++|+.++++..  ....+++.+.....++|.+.+ ||..+.....+.+.
T Consensus         2 ~Ly~~-----~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~y   72 (74)
T cd03051           2 KLYDS-----PTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRY   72 (74)
T ss_pred             EEEeC-----CCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHH
Confidence            68888     9999999999999999999998887642  233456778888889999998 55666665555443

cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.

>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=98.28  E-value=4.5e-06  Score=57.65  Aligned_cols=68  Identities=15%  Similarity=0.172  Sum_probs=55.2

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .||+.     +.||+|.+++.+|+..|++|+.++++.  .....+++.+.....++|.+..+|..+-....+.+.
T Consensus         2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y   71 (74)
T cd03045           2 DLYYL-----PGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIY   71 (74)
T ss_pred             EEEeC-----CCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence            68888     999999999999999999999988864  333457788887778999999888777666655543

GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.

>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1

Probab=98.21  E-value=7.8e-06  Score=57.28  Aligned_cols=55  Identities=20%  Similarity=0.420  Sum_probs=43.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHh----CC--CCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRM----HD--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE  106 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~  106 (205)
                      .|++|+.     +||++|..++.+|++    ++  +++..+|++.+++.    .+..|-.++|.++++|+
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~vPt~~~~g~   62 (82)
T TIGR00411         2 KIELFTS-----PTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK----AMEYGIMAVPAIVINGD   62 (82)
T ss_pred             EEEEEEC-----CCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH----HHHcCCccCCEEEECCE
Confidence            4789999     999999999999864    34  56778887766643    34467889999999997

This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.

>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=98.20  E-value=9.7e-06  Score=55.54  Aligned_cols=67  Identities=16%  Similarity=0.237  Sum_probs=54.6

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~  116 (205)
                      ++|..     +.||+|.+++.+|+..|++|++++++..  ....+++.+.....++|.+..+|..+.....+.+
T Consensus         2 ~Ly~~-----~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~   70 (73)
T cd03056           2 KLYGF-----PLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILV   70 (73)
T ss_pred             EEEeC-----CCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHH
Confidence            67888     9999999999999999999999998742  3344667777777899999999988877666554

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>KOG4023|consensus

Probab=98.19  E-value=5.7e-06  Score=61.96  Aligned_cols=91  Identities=16%  Similarity=0.292  Sum_probs=70.6

Q ss_pred             CcEEEEEeeCCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH--------HhCCCCccEEeeCCeEeechh
Q psy221           42 SKVVVFMKGVPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE--------YTSWPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        42 ~~VvlYsk~~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~--------~~g~~tvPqvFI~G~~IGG~d  112 (205)
                      ..|.+|+++.++. ..=--=..+..+|+.+.|.|+++||....+.++++..        ..|.+.-||||-+++|.|++|
T Consensus         2 ~~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~GnplPPqifn~d~Y~Gdye   81 (108)
T KOG4023|consen    2 MVIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPLPPQIFNGDQYCGDYE   81 (108)
T ss_pred             CceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCCCcccccCccccccHH
Confidence            4577888865432 1111224678899999999999999887666555543        457888999999999999999


Q ss_pred             HHHHHHhcccHHHHHhhcCC
Q psy221          113 ILLKLHQSGELVEQLEKGDQ  132 (205)
Q Consensus       113 el~~l~e~GeL~~~L~~~~~  132 (205)
                      ...+..|+.-|.+.|+-++.
T Consensus        82 ~F~ea~E~ntl~eFL~lap~  101 (108)
T KOG4023|consen   82 LFFEAVEQNTLQEFLGLAPP  101 (108)
T ss_pred             HHHHHHHHHHHHHHHccCCC
Confidence            99999999999999987643

>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family

Probab=98.15  E-value=4.7e-06  Score=63.78  Aligned_cols=46  Identities=20%  Similarity=0.356  Sum_probs=41.5

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      |.||+.     ++||+|++|+++|+++||+|+++|+.+++..+++|.++..
T Consensus         1 i~iY~~-----~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~   46 (117)
T TIGR01617         1 IKVYGS-----PNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILS   46 (117)
T ss_pred             CEEEeC-----CCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHH
Confidence            579999     9999999999999999999999999999888888877653

This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.

>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes

Probab=98.14  E-value=5.8e-06  Score=63.16  Aligned_cols=46  Identities=22%  Similarity=0.520  Sum_probs=41.6

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      |.||+.     ++|+.|++|+++|+++||+|+++|+..++.-+++|.++..
T Consensus         2 i~iY~~-----~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~   47 (115)
T cd03032           2 IKLYTS-----PSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILS   47 (115)
T ss_pred             EEEEeC-----CCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHH
Confidence            789999     9999999999999999999999999998877788877654

It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.

>KOG3029|consensus

Probab=98.08  E-value=1.5e-05  Score=70.18  Aligned_cols=67  Identities=25%  Similarity=0.560  Sum_probs=55.2

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .+++|.-     ++||+|.+|+++|+-+|++|..++|  +|-.|++++ ++....||.+.++|+-.-...-+..+
T Consensus        90 ~l~LyQy-----etCPFCcKVrAFLDyhgisY~VVEV--npV~r~eIk-~SsykKVPil~~~Geqm~dSsvIIs~  156 (370)
T KOG3029|consen   90 DLVLYQY-----ETCPFCCKVRAFLDYHGISYAVVEV--NPVLRQEIK-WSSYKKVPILLIRGEQMVDSSVIISL  156 (370)
T ss_pred             eEEEEee-----ccCchHHHHHHHHhhcCCceEEEEe--cchhhhhcc-ccccccccEEEeccceechhHHHHHH
Confidence            7999999     9999999999999999999999988  466667766 55788999999998855555444444

>PRK12559 transcriptional regulator Spx; Provisional

Probab=98.07  E-value=7.7e-06  Score=64.28  Aligned_cols=47  Identities=13%  Similarity=0.319  Sum_probs=42.3

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW   95 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~   95 (205)
                      |+||+.     ++|+.|++|+++|+++||+|+++|+..++.-.++|..+...
T Consensus         2 i~iY~~-----~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~   48 (131)
T PRK12559          2 VVLYTT-----ASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRL   48 (131)
T ss_pred             EEEEeC-----CCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHH
Confidence            789999     99999999999999999999999999988777888776543

>PRK13344 spxA transcriptional regulator Spx; Reviewed

Probab=98.05  E-value=8.9e-06  Score=63.99  Aligned_cols=45  Identities=13%  Similarity=0.292  Sum_probs=40.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT   93 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~   93 (205)
                      |+||+.     ++|+.|++|+++|+++||+|+++|+..++.-.++|.++.
T Consensus         2 i~iY~~-----~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l   46 (132)
T PRK13344          2 IKIYTI-----SSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAIL   46 (132)
T ss_pred             EEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHH
Confidence            789999     999999999999999999999999998877677777664

>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC

Probab=98.04  E-value=8.1e-06  Score=61.73  Aligned_cols=46  Identities=17%  Similarity=0.282  Sum_probs=40.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      |+||+.     ++|+.|++|+++|+++|++|+++|+.+++--.++|.++..
T Consensus         1 i~iy~~-----~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~   46 (105)
T cd03035           1 ITLYGI-----KNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLA   46 (105)
T ss_pred             CEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHH
Confidence            579999     9999999999999999999999999998776777776653

The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.

>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins

Probab=97.96  E-value=7.3e-05  Score=51.67  Aligned_cols=57  Identities=18%  Similarity=0.201  Sum_probs=48.4

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      +.||+|.+++.+|+..|++|+.++++...        .+....+|.+..+|+.+.+...+.+..+
T Consensus        14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~--------~~p~g~vP~l~~~g~~l~es~~I~~yL~   70 (72)
T cd03054          14 SLSPECLKVETYLRMAGIPYEVVFSSNPW--------RSPTGKLPFLELNGEKIADSEKIIEYLK   70 (72)
T ss_pred             CCCHHHHHHHHHHHhCCCceEEEecCCcc--------cCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence            68999999999999999999999987532        4456689999999999998888776544

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.

>PHA02125 thioredoxin-like protein

Probab=97.95  E-value=4.1e-05  Score=53.86  Aligned_cols=55  Identities=20%  Similarity=0.289  Sum_probs=40.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I  108 (205)
                      |++|+.     +||++|+.++.+|++..  +..++|+.++.  .++.+..+-..+|.+. +|+.+
T Consensus         2 iv~f~a-----~wC~~Ck~~~~~l~~~~--~~~~~vd~~~~--~~l~~~~~v~~~PT~~-~g~~~   56 (75)
T PHA02125          2 IYLFGA-----EWCANCKMVKPMLANVE--YTYVDVDTDEG--VELTAKHHIRSLPTLV-NTSTL   56 (75)
T ss_pred             EEEEEC-----CCCHhHHHHHHHHHHHh--heEEeeeCCCC--HHHHHHcCCceeCeEE-CCEEE
Confidence            788999     99999999999998654  45555554432  3566666788999986 67544

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=97.95  E-value=6e-05  Score=57.25  Aligned_cols=65  Identities=20%  Similarity=0.310  Sum_probs=47.3

Q ss_pred             HHHH-HHHHHhcCCcEEEE-EeeCCCCCCChHHHHHHHHHHhCC-----CCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221           30 DVQK-SIDEMVKKSKVVVF-MKGVPEAPRCGFSNAVVQILRMHD-----VPYDSHDVLKDESIRNGIKEYTSWPTIPQVF  102 (205)
Q Consensus        30 ~~~~-~l~~~~~~~~VvlY-sk~~~~~~~Cp~C~~ak~lL~~~g-----V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF  102 (205)
                      ++.+ ..+++.+...+++| +.     +||++|+.++.+|++..     +.+..+|++.++    ++.+..+-.++|.++
T Consensus        10 ~~~~~~~~~l~~~~~vvv~f~a-----~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~----~l~~~~~v~~vPt~~   80 (113)
T cd02975          10 ALKEEFFKEMKNPVDLVVFSSK-----EGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK----EKAEKYGVERVPTTI   80 (113)
T ss_pred             HHHHHHHHHhCCCeEEEEEeCC-----CCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH----HHHHHcCCCcCCEEE
Confidence            3444 33445555667776 45     89999999999997553     568888888765    456667888999998


Q ss_pred             e
Q psy221          103 I  103 (205)
Q Consensus       103 I  103 (205)
                      +
T Consensus        81 i   81 (113)
T cd02975          81 F   81 (113)
T ss_pred             E
Confidence            8

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC

Probab=97.94  E-value=1.8e-05  Score=60.72  Aligned_cols=47  Identities=13%  Similarity=0.328  Sum_probs=41.2

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      .|+||+.     +.|+.|++|+++|+++|++|+++|+..++--.++|+++..
T Consensus         1 ~i~iy~~-----p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~   47 (113)
T cd03033           1 DIIFYEK-----PGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFG   47 (113)
T ss_pred             CEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHH
Confidence            3789999     9999999999999999999999999988766677776643

It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.

>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2

Probab=97.87  E-value=5.4e-05  Score=53.55  Aligned_cols=49  Identities=16%  Similarity=0.230  Sum_probs=38.5

Q ss_pred             CCChHHHHH----HHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe
Q psy221           55 PRCGFSNAV----VQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV  108 (205)
Q Consensus        55 ~~Cp~C~~a----k~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I  108 (205)
                      +|||.|+.+    ++++++++++++.++|+..++    .. ..|..++|.+++||+.+
T Consensus         8 ~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~----a~-~~~v~~vPti~i~G~~~   60 (76)
T TIGR00412         8 TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNE----IL-EAGVTATPGVAVDGELV   60 (76)
T ss_pred             CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHH----HH-HcCCCcCCEEEECCEEE
Confidence            699999999    667788899999999873222    22 25888999999999754

This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.

>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins

Probab=97.83  E-value=0.00016  Score=50.11  Aligned_cols=71  Identities=10%  Similarity=0.005  Sum_probs=57.0

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      +.+|..     +.||+|.+++-+|...|++|+.+.++...  ...+++.++....++|.+..+|..+.....+.+..+
T Consensus         2 ~~Ly~~-----~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~   74 (76)
T cd03053           2 LKLYGA-----AMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA   74 (76)
T ss_pred             eEEEeC-----CCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence            578888     89999999999999999999998876532  234567777778899999988888877777666543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t

>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.81  E-value=0.00015  Score=50.22  Aligned_cols=68  Identities=16%  Similarity=0.142  Sum_probs=51.7

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC-CCCccEEeeCCeEeechhHHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS-WPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g-~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .+|..     +.||+|.+++-+|+..|++|+.++++... ...+++++.. ..++|.+..+|..+.....+.+..
T Consensus         2 ~Ly~~-----~~sp~~~~v~~~l~~~gl~~~~~~~~~~~-~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL   70 (74)
T cd03058           2 KLLGA-----WASPFVLRVRIALALKGVPYEYVEEDLGN-KSELLLASNPVHKKIPVLLHNGKPICESLIIVEYI   70 (74)
T ss_pred             EEEEC-----CCCchHHHHHHHHHHcCCCCEEEEeCccc-CCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHH
Confidence            57877     89999999999999999999998876532 1234555554 378999988887777776665543

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,

>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins

Probab=97.80  E-value=0.0003  Score=52.08  Aligned_cols=77  Identities=16%  Similarity=0.317  Sum_probs=59.7

Q ss_pred             CcEEEEEeeCCC---CCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPE---APRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~---~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ..+.+|.+..+.   ...||+|++++-+|...||+|+..+|+....- +.+.++.-...+|.+..+|..|...+.+.+..
T Consensus         4 p~~el~vka~~~~~~~g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p-~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYL   82 (91)
T cd03061           4 PEIELFVKASSDGESIGNCPFCQRLFMVLWLKGVVFNVTTVDMKRKP-EDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFL   82 (91)
T ss_pred             CcEEEEEEeccCCCCCCCChhHHHHHHHHHHCCCceEEEEeCCCCCC-HHHHHhCCCCCCCEEEECCEEecCHHHHHHHH
Confidence            457778775433   27899999999999999999999988754321 45777776778999998898888888777764


Q ss_pred             h
Q psy221          119 Q  119 (205)
Q Consensus       119 e  119 (205)
                      +
T Consensus        83 d   83 (91)
T cd03061          83 E   83 (91)
T ss_pred             H
Confidence            4

They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI

>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells

Probab=97.73  E-value=0.00018  Score=50.45  Aligned_cols=69  Identities=10%  Similarity=0.089  Sum_probs=55.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +++|..     +.|+.|.+++-+|++.|++|+.++++..  .....++.++....++|.+..||..+.....+.+.
T Consensus         1 ~~ly~~-----~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~y   71 (73)
T cd03052           1 LVLYHW-----TQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDY   71 (73)
T ss_pred             CEEecC-----CCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence            467888     8999999999999999999999887643  22345688888888999999888887777666554

More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.68  E-value=0.00022  Score=68.01  Aligned_cols=80  Identities=14%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             hhcCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHH----hC-CCCeEEEEccCCHhHHHHHHHHh
Q psy221           19 FHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILR----MH-DVPYDSHDVLKDESIRNGIKEYT   93 (205)
Q Consensus        19 ~~~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~----~~-gV~~~e~DI~~d~~~~~eL~~~~   93 (205)
                      ..+......+++..+.++++-+...|.+|..     ++||+|.++.+.++    .+ +|..+.+|+...++    +.+..
T Consensus       455 ~~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~-----~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~----~~~~~  525 (555)
T TIGR03143       455 NAAGPGQPLGEELLEKIKKITKPVNIKIGVS-----LSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD----LKDEY  525 (555)
T ss_pred             HhcCCCCCCCHHHHHHHHhcCCCeEEEEEEC-----CCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH----HHHhC
Confidence            3344455668888899888877778999999     99999999888764    34 68899999887764    44455


Q ss_pred             CCCCccEEeeCCeE
Q psy221           94 SWPTIPQVFINGEF  107 (205)
Q Consensus        94 g~~tvPqvFI~G~~  107 (205)
                      +-.++|.++|||+.
T Consensus       526 ~v~~vP~~~i~~~~  539 (555)
T TIGR03143       526 GIMSVPAIVVDDQQ  539 (555)
T ss_pred             CceecCEEEECCEE
Confidence            77899999999963

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.67  E-value=0.0004  Score=48.30  Aligned_cols=70  Identities=11%  Similarity=0.135  Sum_probs=55.6

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++++|..     +.++.|.+++-+|...|++|+.+.++.+ ...++++......++|.+..+|..+.....+.+..
T Consensus         1 ~~~Ly~~-----~~~~~~~~v~~~L~~~~i~~e~~~v~~~-~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL   70 (73)
T cd03076           1 PYTLTYF-----PVRGRAEAIRLLLADQGISWEEERVTYE-EWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHL   70 (73)
T ss_pred             CcEEEEe-----CCcchHHHHHHHHHHcCCCCEEEEecHH-HhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            3577877     7899999999999999999999988652 33445666666779999999998888777766654

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w

>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=97.66  E-value=0.00024  Score=48.61  Aligned_cols=68  Identities=15%  Similarity=0.205  Sum_probs=53.1

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      ++|..     ..++.|.+++.+|+..|++|+.+.++..  ....+++.+.....++|.+..+|..+.....+.+.
T Consensus         2 ~L~~~-----~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~y   71 (73)
T cd03042           2 ILYSY-----FRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEY   71 (73)
T ss_pred             EEecC-----CCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            46766     7889999999999999999999887653  22345677777788999999998888766665554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.

>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B

Probab=97.62  E-value=0.00043  Score=48.85  Aligned_cols=48  Identities=27%  Similarity=0.493  Sum_probs=36.1

Q ss_pred             CCChHHHHHHHHH----HhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE
Q psy221           55 PRCGFSNAVVQIL----RMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF  107 (205)
Q Consensus        55 ~~Cp~C~~ak~lL----~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~  107 (205)
                      ++||+|..+.+++    ..++++++.+|+ .+.   +++ ...|-.++|.++|||+.
T Consensus         8 ~~C~~C~~~~~~~~~~~~~~~i~~ei~~~-~~~---~~~-~~ygv~~vPalvIng~~   59 (76)
T PF13192_consen    8 PGCPYCPELVQLLKEAAEELGIEVEIIDI-EDF---EEI-EKYGVMSVPALVINGKV   59 (76)
T ss_dssp             SSCTTHHHHHHHHHHHHHHTTEEEEEEET-TTH---HHH-HHTT-SSSSEEEETTEE
T ss_pred             CCCCCcHHHHHHHHHHHHhcCCeEEEEEc-cCH---HHH-HHcCCCCCCEEEECCEE
Confidence            6799999777755    567888988887 332   344 55688999999999984

...

>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=97.58  E-value=0.00034  Score=48.21  Aligned_cols=67  Identities=10%  Similarity=0.077  Sum_probs=51.0

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHh--CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRM--HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~--~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l  117 (205)
                      .+|..     +.||+|.+++-+|+.  .|++|+.+.++... ...++.+.....++|.+.. ||..+.....+.+.
T Consensus         2 ~Ly~~-----~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~y   71 (73)
T cd03049           2 KLLYS-----PTSPYVRKVRVAAHETGLGDDVELVLVNPWS-DDESLLAVNPLGKIPALVLDDGEALFDSRVICEY   71 (73)
T ss_pred             EEecC-----CCCcHHHHHHHHHHHhCCCCCcEEEEcCccc-CChHHHHhCCCCCCCEEEECCCCEEECHHHHHhh
Confidence            57777     899999999999999  89999999886422 2245566667789999985 67777666655543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs

Probab=97.58  E-value=0.00057  Score=47.69  Aligned_cols=68  Identities=16%  Similarity=0.251  Sum_probs=51.6

Q ss_pred             EEEEEeeC-CCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           44 VVVFMKGV-PEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        44 VvlYsk~~-~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      ++||.... .+. +.+|+|.+++.+|+..|++|+.++++.        +..+...++|.+..+|+.+.....+.+..+
T Consensus         2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~--------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL~   71 (75)
T cd03080           2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL--------AKRSPKGKLPFIELNGEKIADSELIIDHLE   71 (75)
T ss_pred             EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc--------ccCCCCCCCCEEEECCEEEcCHHHHHHHHH
Confidence            46676521 122 468999999999999999999988753        145567789999999999988887766543

Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=97.57  E-value=0.00059  Score=57.24  Aligned_cols=72  Identities=14%  Similarity=0.277  Sum_probs=51.9

Q ss_pred             CCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221           26 PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQ  100 (205)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPq  100 (205)
                      ..+++..+.++++-+.-.|++|+.     +|||+|..++.+|+.+     .|.+..+|++.+++    +.+..+-..+|.
T Consensus       119 ~L~~~~~~~l~~~~~pv~I~~F~a-----~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~----~~~~~~V~~vPt  189 (215)
T TIGR02187       119 GLSEKTVELLQSLDEPVRIEVFVT-----PTCPYCPYAVLMAHKFALANDKILGEMIEANENPD----LAEKYGVMSVPK  189 (215)
T ss_pred             CCCHHHHHHHHhcCCCcEEEEEEC-----CCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHhCCccCCE
Confidence            335566666666444456677888     9999999999999764     35667778777664    444567789999


Q ss_pred             EeeCCe
Q psy221          101 VFINGE  106 (205)
Q Consensus       101 vFI~G~  106 (205)
                      ++++++
T Consensus       190 l~i~~~  195 (215)
T TIGR02187       190 IVINKG  195 (215)
T ss_pred             EEEecC
Confidence            999753

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha

Probab=97.56  E-value=0.00047  Score=47.44  Aligned_cols=68  Identities=15%  Similarity=0.188  Sum_probs=52.3

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      ++|..     +.++.|.+++-+|+..|++|+.++++.......++.......++|.+..+|..+.....+.+.
T Consensus         2 ~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~y   69 (72)
T cd03039           2 KLTYF-----NIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRY   69 (72)
T ss_pred             EEEEE-----cCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcCCCCCEEEECCEEEEecHHHHHH
Confidence            57777     789999999999999999999998865332223355566677999999988887776665554

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma

>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative

Probab=97.56  E-value=0.0006  Score=52.64  Aligned_cols=72  Identities=13%  Similarity=0.141  Sum_probs=45.2

Q ss_pred             HHHHhcC-Cc-EEEEEeeCCCCCCChHHHHHHHHHH----hCCCCeEEEEccCCH--h-----HHHHHHHHhC----CCC
Q psy221           35 IDEMVKK-SK-VVVFMKGVPEAPRCGFSNAVVQILR----MHDVPYDSHDVLKDE--S-----IRNGIKEYTS----WPT   97 (205)
Q Consensus        35 l~~~~~~-~~-VvlYsk~~~~~~~Cp~C~~ak~lL~----~~gV~~~e~DI~~d~--~-----~~~eL~~~~g----~~t   97 (205)
                      +.+.++. .. |+.|+.     +|||+|+.+.-.|.    +.++++-.+|++.+.  +     -..++.+..+    -..
T Consensus        16 ~~~~i~~~~~~iv~f~~-----~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~   90 (122)
T TIGR01295        16 ALEALDKKETATFFIGR-----KTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMG   90 (122)
T ss_pred             HHHHHHcCCcEEEEEEC-----CCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCC
Confidence            4555543 44 555666     99999999777764    456889999998653  1     1223334333    335


Q ss_pred             ccEEe--eCCeEeech
Q psy221           98 IPQVF--INGEFVGGC  111 (205)
Q Consensus        98 vPqvF--I~G~~IGG~  111 (205)
                      +|.++  -+|+.++..
T Consensus        91 ~PT~v~~k~Gk~v~~~  106 (122)
T TIGR01295        91 TPTFVHITDGKQVSVR  106 (122)
T ss_pred             CCEEEEEeCCeEEEEE
Confidence            89884  488766544

This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.

>PHA02278 thioredoxin-like protein

Probab=97.55  E-value=0.00079  Score=50.60  Aligned_cols=66  Identities=17%  Similarity=0.319  Sum_probs=45.9

Q ss_pred             hcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe--eCCeEe
Q psy221           39 VKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF--INGEFV  108 (205)
Q Consensus        39 ~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF--I~G~~I  108 (205)
                      .+..+|+|+...    +||+.|+.+..+|++.      .+++..+||+.++....++.+..+-.++|.+.  -||+.+
T Consensus        12 ~~~~~vvV~F~A----~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v   85 (103)
T PHA02278         12 RQKKDVIVMITQ----DNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV   85 (103)
T ss_pred             hCCCcEEEEEEC----CCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence            346667665543    9999999999887543      35688888887643244566666777888874  488755

>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]

Probab=97.53  E-value=0.00018  Score=55.55  Aligned_cols=46  Identities=22%  Similarity=0.418  Sum_probs=41.0

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT   93 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~   93 (205)
                      .|+||..     +.|.-|++|+++|+++||+|+++|+..++--+++|.++.
T Consensus         2 ~itiy~~-----p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l   47 (117)
T COG1393           2 MITIYGN-----PNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKIL   47 (117)
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHH
Confidence            4889999     999999999999999999999999998877777777654

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=97.51  E-value=0.00045  Score=50.80  Aligned_cols=64  Identities=14%  Similarity=0.141  Sum_probs=43.1

Q ss_pred             HHHHhcCCc-EE-EEEeeCCCCCCChHHHHHHHHH------H-hC--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           35 IDEMVKKSK-VV-VFMKGVPEAPRCGFSNAVVQIL------R-MH--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        35 l~~~~~~~~-Vv-lYsk~~~~~~~Cp~C~~ak~lL------~-~~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +.++++.++ |+ .|..     +||++|+.....+      . .+  ++.+-.+|++.+.....++....+..++|.+++
T Consensus         4 ~~~~~~~~k~vlv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~   78 (104)
T cd02953           4 LAQALAQGKPVFVDFTA-----DWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF   78 (104)
T ss_pred             HHHHHHcCCeEEEEEEc-----chhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence            445555443 44 4666     9999999987543      1 11  566777888776555567777778889998854

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs

Probab=97.49  E-value=0.00076  Score=47.48  Aligned_cols=68  Identities=16%  Similarity=0.146  Sum_probs=52.8

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCCCCccEEeeC---CeEeechhHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSWPTIPQVFIN---GEFVGGCDILLKL  117 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~~tvPqvFI~---G~~IGG~del~~l  117 (205)
                      +.||..     +. |+|.+++.+|+..|++|+.+.++.  .....+++.++....++|.+..+   |..+.....+.+.
T Consensus         2 ~~Ly~~-----~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~y   74 (81)
T cd03048           2 ITLYTH-----GT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLY   74 (81)
T ss_pred             eEEEeC-----CC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHH
Confidence            578877     76 999999999999999999887763  23344667777777899999887   7777666665554

Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and

>TIGR01616 nitro_assoc nitrogenase-associated protein

Probab=97.43  E-value=0.00032  Score=54.88  Aligned_cols=46  Identities=17%  Similarity=0.377  Sum_probs=40.1

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT   93 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~   93 (205)
                      .++||..     +.|.-|++|+++|+++||+|+++|+..++--.++|..+.
T Consensus         2 ~i~iY~~-----p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l   47 (126)
T TIGR01616         2 TIIFYEK-----PGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYF   47 (126)
T ss_pred             eEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHH
Confidence            4789999     999999999999999999999999988766666666654

This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.

>TIGR02182 GRXB Glutaredoxin, GrxB family

Probab=97.42  E-value=0.00059  Score=56.81  Aligned_cols=68  Identities=13%  Similarity=0.288  Sum_probs=52.9

Q ss_pred             EEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEe-eCCeEeechhHHHHHHhc
Q psy221           46 VFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF-INGEFVGGCDILLKLHQS  120 (205)
Q Consensus        46 lYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF-I~G~~IGG~del~~l~e~  120 (205)
                      +|..     ..||+|.+++-+|+.+|++|+.+++..+.. .. ..+.....++|++. .||..+.+...+.+..++
T Consensus         2 Ly~~-----~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~-~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~   70 (209)
T TIGR02182         2 LYIY-----DHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ET-PIRMIGAKQVPILQKDDGRAMPESLDIVAYFDK   70 (209)
T ss_pred             eecC-----CCCChHHHHHHHHHHcCCCeEEEECCCCcc-hh-HHHhcCCCCcceEEeeCCeEeccHHHHHHHHHH
Confidence            5766     889999999999999999999998865432 12 24555677999997 788889888887775443

This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.

>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.00054  Score=49.12  Aligned_cols=65  Identities=20%  Similarity=0.301  Sum_probs=47.2

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-HhHHHHHHHH-----------hCCCCccEEeeCC-eEeech
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-ESIRNGIKEY-----------TSWPTIPQVFING-EFVGGC  111 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-~~~~~eL~~~-----------~g~~tvPqvFI~G-~~IGG~  111 (205)
                      ++|..     ..||+|..+++.|++++|.|+++||... +.+++.|+-.           .|+..+|.+.+++ +.|=| 
T Consensus         5 ~lfgs-----n~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl~-   78 (85)
T COG4545           5 KLFGS-----NLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVLG-   78 (85)
T ss_pred             eeecc-----ccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEEe-
Confidence            67777     7999999999999999999999999765 3333333211           2667899998854 54444 


Q ss_pred             hHHH
Q psy221          112 DILL  115 (205)
Q Consensus       112 del~  115 (205)
                      +|+.
T Consensus        79 ~Dl~   82 (85)
T COG4545          79 DDLS   82 (85)
T ss_pred             chhh
Confidence            4443

>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor

Probab=97.40  E-value=0.00063  Score=48.36  Aligned_cols=74  Identities=12%  Similarity=0.095  Sum_probs=53.5

Q ss_pred             EEEEeeC-CCC-CCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHHHh
Q psy221           45 VVFMKGV-PEA-PRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKLHQ  119 (205)
Q Consensus        45 vlYsk~~-~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l~e  119 (205)
                      ++|+..- .+. +.+|+|.+++.+|...|++|+.+.++..  +....++ +......+|.+..+ |..+.+...+.+..+
T Consensus         2 ~~~~~~~~~~~~~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~   80 (84)
T cd03038           2 TLYDLAGKDPVRAFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE   80 (84)
T ss_pred             eeEeccCCCCCCCcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence            4554432 223 7899999999999999999998877643  2223344 45667899999888 888888777776543

This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.

>PRK10026 arsenate reductase; Provisional

Probab=97.39  E-value=0.00038  Score=55.54  Aligned_cols=47  Identities=17%  Similarity=0.385  Sum_probs=41.3

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT   93 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~   93 (205)
                      ..++||..     +.|.-|++|+++|+++|++|+++|+..++--.++|..+.
T Consensus         2 ~~i~iY~~-----p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l   48 (141)
T PRK10026          2 SNITIYHN-----PACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLI   48 (141)
T ss_pred             CEEEEEeC-----CCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHH
Confidence            46899999     999999999999999999999999988876666776654

>PRK10387 glutaredoxin 2; Provisional

Probab=97.38  E-value=0.00084  Score=55.06  Aligned_cols=69  Identities=10%  Similarity=0.232  Sum_probs=53.0

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEE-eeCCeEeechhHHHHHHhc
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV-FINGEFVGGCDILLKLHQS  120 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv-FI~G~~IGG~del~~l~e~  120 (205)
                      .+|+.     +.||+|.+++-+|+..||+|+.++++..+.. .. .+..+..++|++ .-||..+.....|.+..++
T Consensus         2 ~Ly~~-----~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~-~~-~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~   71 (210)
T PRK10387          2 KLYIY-----DHCPFCVKARMIFGLKNIPVELIVLANDDEA-TP-IRMIGQKQVPILQKDDGSYMPESLDIVHYIDE   71 (210)
T ss_pred             EEEeC-----CCCchHHHHHHHHHHcCCCeEEEEcCCCchh-hH-HHhcCCcccceEEecCCeEecCHHHHHHHHHH
Confidence            57887     8999999999999999999999998654322 22 345566799999 4578888888777665443

>TIGR00014 arsC arsenate reductase (glutaredoxin)

Probab=97.38  E-value=0.00033  Score=53.54  Aligned_cols=46  Identities=17%  Similarity=0.385  Sum_probs=40.3

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      |+||..     ++|.-|++|+++|+++|++|+++|+.+++--.++|.++..
T Consensus         1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~   46 (114)
T TIGR00014         1 VTIYHN-----PRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFA   46 (114)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHH
Confidence            578999     9999999999999999999999999988766777776653

composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.

>PRK10853 putative reductase; Provisional

Probab=97.37  E-value=0.00033  Score=54.10  Aligned_cols=46  Identities=15%  Similarity=0.225  Sum_probs=40.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      |+||..     +.|.-|++|+++|+++|++|+++|+..++--.++|.++..
T Consensus         2 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~   47 (118)
T PRK10853          2 VTLYGI-----KNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFID   47 (118)
T ss_pred             EEEEcC-----CCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHH
Confidence            789999     9999999999999999999999999888766677776653

>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli

Probab=97.35  E-value=0.00037  Score=53.04  Aligned_cols=45  Identities=18%  Similarity=0.392  Sum_probs=38.5

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT   93 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~   93 (205)
                      |+||..     +.|.-|++|+++|++++++|+++|+.+++--.++|..+.
T Consensus         1 i~iy~~-----~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l   45 (112)
T cd03034           1 ITIYHN-----PRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELL   45 (112)
T ss_pred             CEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHH
Confidence            578999     999999999999999999999999988765556666543

E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.

>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold

Probab=97.30  E-value=0.0009  Score=41.94  Aligned_cols=56  Identities=23%  Similarity=0.461  Sum_probs=43.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHH-----hCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILR-----MHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFING  105 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~-----~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G  105 (205)
                      +++|..     .+|++|.+++..|.     ..++.+..+|++......+. ....+...+|.+++.+
T Consensus         1 l~~~~~-----~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~~   61 (69)
T cd01659           1 LVLFYA-----PWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKE-LKRYGVGGVPTLVVFG   61 (69)
T ss_pred             CEEEEC-----CCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhH-HHhCCCccccEEEEEe
Confidence            356777     89999999999999     56788999999887765544 2335667899998865

Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=97.25  E-value=0.0028  Score=46.17  Aligned_cols=55  Identities=27%  Similarity=0.433  Sum_probs=40.4

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHh------CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRM------HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~------~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ++|..     +||+.|..+...|++      .++.+..+|++.++++    ....+-..+|.+++  +|+.+
T Consensus        18 v~f~a-----~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l----~~~~~v~~vPt~~i~~~g~~v   80 (97)
T cd02949          18 VLYTS-----PTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEI----AEAAGIMGTPTVQFFKDKELV   80 (97)
T ss_pred             EEEEC-----CCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHCCCeeccEEEEEECCeEE
Confidence            44656     999999999999866      3467888888877654    34446678998865  77655

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B

Probab=97.25  E-value=0.00077  Score=46.66  Aligned_cols=64  Identities=16%  Similarity=0.204  Sum_probs=49.7

Q ss_pred             CChHHHHHHHHHHhCCCCeEEEEccC--C-HhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHHh
Q psy221           56 RCGFSNAVVQILRMHDVPYDSHDVLK--D-ESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLHQ  119 (205)
Q Consensus        56 ~Cp~C~~ak~lL~~~gV~~~e~DI~~--d-~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~e  119 (205)
                      .||||.++.-+|+.+|++++..-+..  + .....++.++++..++|.+.. +|+.+.....+.+..+
T Consensus         1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~   68 (70)
T PF13409_consen    1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE   68 (70)
T ss_dssp             T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred             CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence            49999999999999999998877632  2 222367788888999999998 8899988888777654

...

>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase

Probab=97.18  E-value=0.003  Score=43.78  Aligned_cols=68  Identities=13%  Similarity=0.256  Sum_probs=52.4

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .+|..     +.++.|.+++-+|+..|++|+.+.++..  +...+++.++.....+|.+..+|..+-....+.+.
T Consensus         2 ~ly~~-----~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Y   71 (76)
T cd03050           2 KLYYD-----LMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRY   71 (76)
T ss_pred             EEeeC-----CCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHH
Confidence            57887     8999999999999999999998887642  22334677777788999998888776665555544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC

>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis

Probab=97.16  E-value=0.0022  Score=44.57  Aligned_cols=68  Identities=7%  Similarity=0.021  Sum_probs=52.2

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH-hHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE-SIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~-~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l  117 (205)
                      .+|..     +.|++|.+++-+|+..|++|+.++++... ...+++++++-..++|.+..+ |..+-....+.+.
T Consensus         2 ~Ly~~-----~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~y   71 (75)
T cd03044           2 TLYTY-----PGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYY   71 (75)
T ss_pred             eEecC-----CCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHH
Confidence            46766     88999999999999999999999887642 223567777778899999985 7767655555444

EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=97.13  E-value=0.0035  Score=43.16  Aligned_cols=56  Identities=29%  Similarity=0.442  Sum_probs=41.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh-----CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM-----HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~-----~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      +++|+.     ++|++|..+...|++     .++.+..+|++.++.+.+    ..+-..+|.+++  +|+.+
T Consensus        14 ll~~~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~----~~~v~~~P~~~~~~~g~~~   76 (93)
T cd02947          14 VVDFWA-----PWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAE----EYGVRSIPTFLFFKNGKEV   76 (93)
T ss_pred             EEEEEC-----CCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHH----hcCcccccEEEEEECCEEE
Confidence            455656     999999999999987     678888889887665433    345668899877  77643

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=97.13  E-value=0.0032  Score=48.48  Aligned_cols=58  Identities=14%  Similarity=0.114  Sum_probs=42.0

Q ss_pred             cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----C-CCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEee
Q psy221           43 KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----D-VPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVG  109 (205)
Q Consensus        43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----g-V~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IG  109 (205)
                      .|+| |..     +||+.|+.+..+|+++     + +.|-.+|++++++    +.+..+-..+|.+  |-+|+.++
T Consensus        16 ~vVV~F~A-----~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~----la~~~~V~~iPTf~~fk~G~~v~   82 (114)
T cd02954          16 VVVIRFGR-----DWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD----FNKMYELYDPPTVMFFFRNKHMK   82 (114)
T ss_pred             EEEEEEEC-----CCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHcCCCCCCEEEEEECCEEEE
Confidence            3444 777     9999999999888543     2 4677888888774    4555567788987  44887764

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>PTZ00051 thioredoxin; Provisional

Probab=97.01  E-value=0.0066  Score=43.70  Aligned_cols=67  Identities=18%  Similarity=0.334  Sum_probs=43.3

Q ss_pred             HHHHHhcCC-cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--C
Q psy221           34 SIDEMVKKS-KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--N  104 (205)
Q Consensus        34 ~l~~~~~~~-~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~  104 (205)
                      .++++++.+ .++| |..     +||+.|..+...|+..     ++.+-.+|++....    +.+..+-..+|.+.+  +
T Consensus        10 ~~~~~~~~~~~vli~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~   80 (98)
T PTZ00051         10 EFESTLSQNELVIVDFYA-----EWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSE----VAEKENITSMPTFKVFKN   80 (98)
T ss_pred             HHHHHHhcCCeEEEEEEC-----CCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHH----HHHHCCCceeeEEEEEeC
Confidence            345555544 4444 555     9999999999888663     56777778765543    344446667887644  7


Q ss_pred             CeEee
Q psy221          105 GEFVG  109 (205)
Q Consensus       105 G~~IG  109 (205)
                      |+.++
T Consensus        81 g~~~~   85 (98)
T PTZ00051         81 GSVVD   85 (98)
T ss_pred             CeEEE
Confidence            76553

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=97.00  E-value=0.0069  Score=44.80  Aligned_cols=61  Identities=18%  Similarity=0.198  Sum_probs=41.5

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ..|+| |..     +||+.|+.....|+++     ++.|-.+|++.++.. .++.+..+-..+|.+++  +|+.+
T Consensus        16 k~vvv~F~a-----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~-~~l~~~~~V~~~Pt~~~~~~G~~v   84 (103)
T cd02985          16 RLVVLEFAL-----KHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDST-MELCRREKIIEVPHFLFYKDGEKI   84 (103)
T ss_pred             CEEEEEEEC-----CCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHH-HHHHHHcCCCcCCEEEEEeCCeEE
Confidence            34555 555     9999999998888653     566778887766533 34555557778887644  78654

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A

Probab=96.99  E-value=0.00078  Score=52.75  Aligned_cols=70  Identities=13%  Similarity=0.202  Sum_probs=42.3

Q ss_pred             ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHh----C-CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221           28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRM----H-DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF  102 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~-gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF  102 (205)
                      +++..+.+..+.+...+++++.     +|||+|....-+|..    . ++++..+..+.+++..+.+.. .|.+.+|.++
T Consensus        29 ~~~~~~~l~~~~~~~~ilvi~e-----~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~~~IP~~I  102 (129)
T PF14595_consen   29 SEEQIEKLKSIQKPYNILVITE-----TWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGGRSIPTFI  102 (129)
T ss_dssp             -HHHHHHHHT--S-EEEEEE-------TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS--SSEEE
T ss_pred             CHHHHHHHHhcCCCcEEEEEEC-----CCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCCeecCEEE
Confidence            5667777888878889999999     999999998777743    3 566666665555554444444 5788999996


Q ss_pred             e
Q psy221          103 I  103 (205)
Q Consensus       103 I  103 (205)
                      +
T Consensus       103 ~  103 (129)
T PF14595_consen  103 F  103 (129)
T ss_dssp             E
T ss_pred             E
Confidence            6

>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif

Probab=96.99  E-value=0.0075  Score=45.70  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=43.9

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeec
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGG  110 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG  110 (205)
                      +...|+|+...    +||+.|+.+...|+++     ++.+-.+|++..++    +.+..+-..+|.+  |-+|+.++-
T Consensus        21 ~~~~vvV~f~a----~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~----l~~~~~v~~vPt~l~fk~G~~v~~   90 (113)
T cd02989          21 SSERVVCHFYH----PEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPF----LVEKLNIKVLPTVILFKNGKTVDR   90 (113)
T ss_pred             CCCcEEEEEEC----CCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHH----HHHHCCCccCCEEEEEECCEEEEE
Confidence            44566554443    9999999999888652     57888888887764    4444466678877  448876653

The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.

>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions

Probab=96.99  E-value=0.0053  Score=46.13  Aligned_cols=66  Identities=20%  Similarity=0.292  Sum_probs=45.6

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeechhH
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGGCDI  113 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG~de  113 (205)
                      .+|+| |..     +||+.|+.+...|+++     ++.|-.+|++..     ++.+..+-..+|.+  |-+|+.++....
T Consensus        25 ~~vvv~F~a-----~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-----~l~~~~~i~~~Pt~~~f~~G~~v~~~~G   94 (113)
T cd02957          25 TRVVVHFYE-----PGFPRCKILDSHLEELAAKYPETKFVKINAEKA-----FLVNYLDIKVLPTLLVYKNGELIDNIVG   94 (113)
T ss_pred             CEEEEEEeC-----CCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-----HHHHhcCCCcCCEEEEEECCEEEEEEec
Confidence            45555 656     9999999999888653     466777777543     55666677788977  558988765544


Q ss_pred             HHHH
Q psy221          114 LLKL  117 (205)
Q Consensus       114 l~~l  117 (205)
                      ...+
T Consensus        95 ~~~~   98 (113)
T cd02957          95 FEEL   98 (113)
T ss_pred             HHHh
Confidence            4443

Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te

>PRK09481 sspA stringent starvation protein A; Provisional

Probab=96.96  E-value=0.0045  Score=51.31  Aligned_cols=69  Identities=16%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .+.||+.     +.|++|.+++-+|+..|++|+.+.|+... ..+++.++.-..+||.+..||..|--...|.+.
T Consensus        10 ~~~Ly~~-----~~s~~~~rv~~~L~e~gl~~e~~~v~~~~-~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~Y   78 (211)
T PRK09481         10 VMTLFSG-----PTDIYSHQVRIVLAEKGVSVEIEQVEKDN-LPQDLIDLNPYQSVPTLVDRELTLYESRIIMEY   78 (211)
T ss_pred             eeEEeCC-----CCChhHHHHHHHHHHCCCCCEEEeCCccc-CCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHH
Confidence            4789988     89999999999999999999999987532 234666776678999999888777666555543

>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs

Probab=96.93  E-value=0.0059  Score=42.06  Aligned_cols=67  Identities=10%  Similarity=0.068  Sum_probs=51.9

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~  116 (205)
                      .+|..     +..+.+.+++-+|+..|++|+.++++..  +...+++.+.....++|.+..+|..|.....+.+
T Consensus         2 ~l~~~-----~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~   70 (73)
T cd03047           2 TIWGR-----RSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILR   70 (73)
T ss_pred             EEEec-----CCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHH
Confidence            57777     8899999999999999999998887642  2334567777777899999888877766555544

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=96.87  E-value=0.0025  Score=45.73  Aligned_cols=61  Identities=23%  Similarity=0.372  Sum_probs=41.1

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ..+++|+..+    +||+.|+..+..|.+    +  +|.+-.+|.+.++    .+.+..+-..+|.+++  +|+.+.
T Consensus        17 ~~~vvv~f~~----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pt~~~~~~g~~~~   85 (103)
T PF00085_consen   17 DKPVVVYFYA----PWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENK----ELCKKYGVKSVPTIIFFKNGKEVK   85 (103)
T ss_dssp             SSEEEEEEES----TTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSH----HHHHHTTCSSSSEEEEEETTEEEE
T ss_pred             CCCEEEEEeC----CCCCccccccceecccccccccccccchhhhhccc----hhhhccCCCCCCEEEEEECCcEEE
Confidence            3555554443    999999999988843    3  4667777777664    4555557778998854  675543

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=96.77  E-value=0.0082  Score=41.60  Aligned_cols=67  Identities=15%  Similarity=0.205  Sum_probs=49.2

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l  117 (205)
                      .+|..     +.+ .+.+++-+|...|++|+.++++...  ...+++.++.....+|.+..+ |..+-....+.+.
T Consensus         2 ~Ly~~-----~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~y   71 (77)
T cd03057           2 KLYYS-----PGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQY   71 (77)
T ss_pred             EEEeC-----CCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHH
Confidence            46766     555 4789999999999999988776532  234677778888899999887 6666666555554

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.

>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []

Probab=96.75  E-value=0.0035  Score=47.23  Aligned_cols=39  Identities=21%  Similarity=0.399  Sum_probs=29.4

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT   93 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~   93 (205)
                      +.|.-|++|+++|+++|++|+++|+..++--+++|.++.
T Consensus         4 ~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l   42 (110)
T PF03960_consen    4 PNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELL   42 (110)
T ss_dssp             TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHH
Confidence            899999999999999999999999999876666666553

This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=96.75  E-value=0.0062  Score=46.21  Aligned_cols=68  Identities=12%  Similarity=0.255  Sum_probs=42.1

Q ss_pred             HHHHHHHhcCC--cEEE-EEeeCCCCCCChHHHHHHHHHH-------h--CCCCeEEEEccCCHhH---------HHHHH
Q psy221           32 QKSIDEMVKKS--KVVV-FMKGVPEAPRCGFSNAVVQILR-------M--HDVPYDSHDVLKDESI---------RNGIK   90 (205)
Q Consensus        32 ~~~l~~~~~~~--~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~-------~--~gV~~~e~DI~~d~~~---------~~eL~   90 (205)
                      -+.++++.+++  +|+| |..     +||++|++....+.       .  .++.+..+|++.+...         ..++.
T Consensus         3 ~~~~~~a~~~~~k~vlv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~   77 (125)
T cd02951           3 YEDLAEAAADGKKPLLLLFSQ-----PGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELA   77 (125)
T ss_pred             HHHHHHHHHcCCCcEEEEEeC-----CCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHH
Confidence            34556666655  4544 555     99999999876542       1  2455566776654221         24666


Q ss_pred             HHhCCCCccEE-eeC
Q psy221           91 EYTSWPTIPQV-FIN  104 (205)
Q Consensus        91 ~~~g~~tvPqv-FI~  104 (205)
                      ...+...+|.+ |++
T Consensus        78 ~~~~v~~~Pt~~~~~   92 (125)
T cd02951          78 RKYRVRFTPTVIFLD   92 (125)
T ss_pred             HHcCCccccEEEEEc
Confidence            66677889996 444

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S

Probab=96.68  E-value=0.012  Score=40.43  Aligned_cols=69  Identities=12%  Similarity=0.135  Sum_probs=51.2

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      .+|..     +. +.+.+++-+|...|++|+.+.++..  .....++.++.....+|.+..+|..+.....+.+..+
T Consensus         2 ~l~~~-----~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~   72 (76)
T cd03046           2 TLYHL-----PR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA   72 (76)
T ss_pred             EEEeC-----CC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            45654     44 5678999999999999998887643  2234566667777899999999988887777666543

cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb

>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs

Probab=96.67  E-value=0.014  Score=40.49  Aligned_cols=63  Identities=16%  Similarity=0.163  Sum_probs=50.1

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCCH-hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKDE-SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~-~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      ..++++.+++-+|+..|++|+.+.++... +...++++......+|.+..+|..+.....+.+.
T Consensus         8 ~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~Y   71 (73)
T cd03043           8 NYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPTGKVPVLVDGGIVVWDSLAICEY   71 (73)
T ss_pred             CCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHH
Confidence            67999999999999999999998886532 2345677777788999999998877776665543

GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.

>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions

Probab=96.65  E-value=0.012  Score=48.13  Aligned_cols=58  Identities=21%  Similarity=0.278  Sum_probs=40.7

Q ss_pred             cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeec
Q psy221           43 KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGG  110 (205)
Q Consensus        43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG  110 (205)
                      .||| |..     +||+.|+.+...|+.+     .+.|-.+|++..     .+....+-..+|.+  |-+|+.++.
T Consensus        85 ~VVV~Fya-----~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-----~l~~~f~v~~vPTlllyk~G~~v~~  150 (175)
T cd02987          85 TVVVHIYE-----PGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-----GASDEFDTDALPALLVYKGGELIGN  150 (175)
T ss_pred             EEEEEEEC-----CCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-----hhHHhCCCCCCCEEEEEECCEEEEE
Confidence            5665 555     9999999888877543     456777777642     55566677889977  559987753

It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1

Probab=96.63  E-value=0.0064  Score=46.89  Aligned_cols=69  Identities=20%  Similarity=0.242  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhcCCcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----C-CCeEEEEccCCHhHHHHHHHHhCCCCccE--
Q psy221           30 DVQKSIDEMVKKSKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----D-VPYDSHDVLKDESIRNGIKEYTSWPTIPQ--  100 (205)
Q Consensus        30 ~~~~~l~~~~~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----g-V~~~e~DI~~d~~~~~eL~~~~g~~tvPq--  100 (205)
                      ++.+.+.+. +...||| |+.     +||+.|+.+-.+|.++     + +.|-.+|+++.+++-+.+.    -...|.  
T Consensus         4 ~~d~~i~~~-~~klVVVdF~a-----~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~----I~amPtfv   73 (114)
T cd02986           4 EVDQAIKST-AEKVLVLRFGR-----DEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFD----ISYIPSTI   73 (114)
T ss_pred             HHHHHHHhc-CCCEEEEEEeC-----CCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcC----ceeCcEEE
Confidence            444444444 3445555 777     9999999999999765     2 5577888888776544433    223444  


Q ss_pred             EeeCCeEe
Q psy221          101 VFINGEFV  108 (205)
Q Consensus       101 vFI~G~~I  108 (205)
                      +|-+|+|+
T Consensus        74 ffkngkh~   81 (114)
T cd02986          74 FFFNGQHM   81 (114)
T ss_pred             EEECCcEE
Confidence            56789886

Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.

>TIGR00862 O-ClC intracellular chloride channel protein

Probab=96.63  E-value=0.017  Score=49.70  Aligned_cols=75  Identities=16%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             EEEEEeeCCC---CCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           44 VVVFMKGVPE---APRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        44 VvlYsk~~~~---~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      |.+|.+.-.+   ...||+|++++.+|...|++|+.++|+.... .+++.++.-..++|.+.-+|..|.....|.+..+
T Consensus         3 ~el~~ka~~~~~~~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~-~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~   80 (236)
T TIGR00862         3 IELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFNVTTVDLKRK-PEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLE   80 (236)
T ss_pred             eEEEEecCCCCCcCCCCHhHHHHHHHHHHcCCCcEEEEECCCCC-CHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHH
Confidence            5666664221   2789999999999999999999988875432 3567777777899999888888888887777654

These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=96.59  E-value=0.012  Score=42.63  Aligned_cols=63  Identities=11%  Similarity=0.217  Sum_probs=43.2

Q ss_pred             HHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CC
Q psy221           35 IDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NG  105 (205)
Q Consensus        35 l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G  105 (205)
                      ++++++...++.|..     +||+.|+.....|++.       ++.+..+|.+.++.    +....+-.++|.+++  +|
T Consensus        11 f~~~~~~~~lv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g   81 (101)
T cd02994          11 WTLVLEGEWMIEFYA-----PWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPG----LSGRFFVTALPTIYHAKDG   81 (101)
T ss_pred             HHHHhCCCEEEEEEC-----CCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHh----HHHHcCCcccCEEEEeCCC
Confidence            344556666666777     9999999988887533       45677778776664    334446678888865  55


Q ss_pred             e
Q psy221          106 E  106 (205)
Q Consensus       106 ~  106 (205)
                      +
T Consensus        82 ~   82 (101)
T cd02994          82 V   82 (101)
T ss_pred             C
Confidence            4

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>KOG0910|consensus

Probab=96.51  E-value=0.006  Score=49.13  Aligned_cols=69  Identities=25%  Similarity=0.280  Sum_probs=47.4

Q ss_pred             HHHHHHHHhc-CCcE-EEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE-
Q psy221           31 VQKSIDEMVK-KSKV-VVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV-  101 (205)
Q Consensus        31 ~~~~l~~~~~-~~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv-  101 (205)
                      ..++-..+++ ..+| |-|..     +||..|+.+.-+|+++      .+.+-.+|++++.+    |...++-..+|.+ 
T Consensus        50 ~~~~~~~Vi~S~~PVlVdF~A-----~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~e----la~~Y~I~avPtvl  120 (150)
T KOG0910|consen   50 DSEFDDKVINSDVPVLVDFHA-----EWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPE----LAEDYEISAVPTVL  120 (150)
T ss_pred             HHHHHHHHHccCCCEEEEEec-----CcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccc----hHhhcceeeeeEEE
Confidence            3444445554 4555 44888     9999999999999765      34566777777774    4555566789987 


Q ss_pred             -eeCCeEe
Q psy221          102 -FINGEFV  108 (205)
Q Consensus       102 -FI~G~~I  108 (205)
                       |-||+-+
T Consensus       121 vfknGe~~  128 (150)
T KOG0910|consen  121 VFKNGEKV  128 (150)
T ss_pred             EEECCEEe
Confidence             5588644

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.0086  Score=53.21  Aligned_cols=77  Identities=17%  Similarity=0.280  Sum_probs=56.7

Q ss_pred             ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221           28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV  101 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv  101 (205)
                      ...+++.+.+.....||+|+...    |||+.|+....+|+..      ++..-.+|++.++.+    ....|-.++|.|
T Consensus        30 ~anfe~~V~~~S~~~PVlV~fWa----p~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~v----AaqfgiqsIPtV  101 (304)
T COG3118          30 EANFEQEVIQSSREVPVLVDFWA----PWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMV----AAQFGVQSIPTV  101 (304)
T ss_pred             HhHHHHHHHHHccCCCeEEEecC----CCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhH----HHHhCcCcCCeE
Confidence            34456666666677677776554    9999999999999754      234567788877755    444577789987


Q ss_pred             --eeCCeEeechh
Q psy221          102 --FINGEFVGGCD  112 (205)
Q Consensus       102 --FI~G~~IGG~d  112 (205)
                        |++|+.|-||.
T Consensus       102 ~af~dGqpVdgF~  114 (304)
T COG3118         102 YAFKDGQPVDGFQ  114 (304)
T ss_pred             EEeeCCcCccccC
Confidence              88999998874

>PRK15113 glutathione S-transferase; Provisional

Probab=96.47  E-value=0.018  Score=47.75  Aligned_cols=71  Identities=10%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             CcEEEEEeeCCCCC--CChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           42 SKVVVFMKGVPEAP--RCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        42 ~~VvlYsk~~~~~~--~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      ..++||..     +  .|++|.+++-+|.+.||+|+.+.++..  +...+++.++.-...||++..||..|--...+.+.
T Consensus         4 ~~~~Ly~~-----~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~Y   78 (214)
T PRK15113          4 PAITLYSD-----AHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEY   78 (214)
T ss_pred             CeEEEEeC-----CCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHH
Confidence            45788986     4  699999999999999999998887642  23346777777778999999998777655555443

>TIGR02187 GlrX_arch Glutaredoxin-like domain protein

Probab=96.47  E-value=0.025  Score=47.34  Aligned_cols=65  Identities=18%  Similarity=0.267  Sum_probs=43.4

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      +...|++|+.  ...+||++|+.+..+|++.     ++++..++++.+.  ..++.+..+-..+|.+.+  ||+.+
T Consensus        19 ~~~~i~~f~~--~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~--~~~l~~~~~V~~~Pt~~~f~~g~~~   90 (215)
T TIGR02187        19 NPVEIVVFTD--NDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE--DKEEAEKYGVERVPTTIILEEGKDG   90 (215)
T ss_pred             CCeEEEEEcC--CCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc--cHHHHHHcCCCccCEEEEEeCCeee
Confidence            3445667755  3348999999999998655     3455677776443  235666667788999866  65443

This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.

>TIGR01068 thioredoxin thioredoxin

Probab=96.46  E-value=0.038  Score=39.19  Aligned_cols=58  Identities=26%  Similarity=0.386  Sum_probs=40.2

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      .|+||.-+    +||+.|..+...|++.      .+.+-.+|.+.+++    +....+...+|.+++  +|+.+
T Consensus        16 ~vvi~f~~----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~P~~~~~~~g~~~   81 (101)
T TIGR01068        16 PVLVDFWA----PWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPD----IAAKYGIRSIPTLLLFKNGKEV   81 (101)
T ss_pred             cEEEEEEC----CCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCcCCEEEEEeCCcEe
Confidence            55554443    8999999998877542      36777788776654    344457789999876  77644

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain

Probab=96.21  E-value=0.022  Score=43.49  Aligned_cols=66  Identities=17%  Similarity=0.247  Sum_probs=42.2

Q ss_pred             HHHHHHHHHhcCC-cEEE-EEeeCCCCCCChHHHHHHHHHHh------CCCCeEEEEccCCHhHHHHHHHHhCCC--Ccc
Q psy221           30 DVQKSIDEMVKKS-KVVV-FMKGVPEAPRCGFSNAVVQILRM------HDVPYDSHDVLKDESIRNGIKEYTSWP--TIP   99 (205)
Q Consensus        30 ~~~~~l~~~~~~~-~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~------~gV~~~e~DI~~d~~~~~eL~~~~g~~--tvP   99 (205)
                      +.++.++++..++ +|+| |..     +||++|+.....+.+      ....|..+|++.+++...+   ..+..  .+|
T Consensus         7 ~~~~al~~A~~~~kpVlV~F~a-----~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~---~~~~~g~~vP   78 (117)
T cd02959           7 TLEDGIKEAKDSGKPLMLLIHK-----TWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDE---EFSPDGGYIP   78 (117)
T ss_pred             eHHHHHHHHHHcCCcEEEEEeC-----CcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhh---hcccCCCccc
Confidence            3566667666544 4555 666     999999999888866      3446888888876532211   22222  489


Q ss_pred             EEee
Q psy221          100 QVFI  103 (205)
Q Consensus       100 qvFI  103 (205)
                      .+++
T Consensus        79 t~~f   82 (117)
T cd02959          79 RILF   82 (117)
T ss_pred             eEEE
Confidence            8854

Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=96.14  E-value=0.019  Score=42.20  Aligned_cols=66  Identities=18%  Similarity=0.227  Sum_probs=41.1

Q ss_pred             HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHh----C---C--CCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221           30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRM----H---D--VPYDSHDVLKDESIRNGIKEYTSWPTIPQ  100 (205)
Q Consensus        30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~---g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPq  100 (205)
                      |+++.++++.+...|+|+..+    +||+.|++....|++    +   +  +.+..+|++..+.    +.+..+-.++|.
T Consensus         4 ~~~~~~~~~~~~~~vlv~f~a----~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~I~~~Pt   75 (104)
T cd03000           4 DLDDSFKDVRKEDIWLVDFYA----PWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSS----IASEFGVRGYPT   75 (104)
T ss_pred             echhhhhhhccCCeEEEEEEC----CCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHh----HHhhcCCccccE
Confidence            345566666665666554443    999999988877743    2   3  3445566655543    444456678898


Q ss_pred             Eee
Q psy221          101 VFI  103 (205)
Q Consensus       101 vFI  103 (205)
                      +++
T Consensus        76 ~~l   78 (104)
T cd03000          76 IKL   78 (104)
T ss_pred             EEE
Confidence            844

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=96.14  E-value=0.044  Score=41.02  Aligned_cols=59  Identities=12%  Similarity=0.201  Sum_probs=39.2

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHH----h---CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEe--eCCeEe
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILR----M---HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF--INGEFV  108 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~----~---~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF--I~G~~I  108 (205)
                      ..+|+| |..     +||+.|+.....|+    .   .++.+-.+|++.++.    +....+-.++|.++  -+|+.+
T Consensus        24 ~~~vlV~F~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~i~~~g~~~   92 (111)
T cd02963          24 KKPYLIKITS-----DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERR----LARKLGAHSVPAIVGIINGQVT   92 (111)
T ss_pred             CCeEEEEEEC-----CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHH----HHHHcCCccCCEEEEEECCEEE
Confidence            345555 555     99999988876653    2   256777888776654    34445677889775  578655

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=96.12  E-value=0.048  Score=38.92  Aligned_cols=58  Identities=21%  Similarity=0.253  Sum_probs=38.0

Q ss_pred             CcE-EEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEe
Q psy221           42 SKV-VVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFV  108 (205)
Q Consensus        42 ~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~I  108 (205)
                      ..| +.|..     +||+.|.++...|++.      .+.+-.+|++..++    +....+-..+|.+  |.+|+.+
T Consensus        15 ~~v~v~f~~-----~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~   81 (97)
T cd02984          15 KLLVLHFWA-----PWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPE----ISEKFEITAVPTFVFFRNGTIV   81 (97)
T ss_pred             CEEEEEEEC-----CCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHH----HHHhcCCccccEEEEEECCEEE
Confidence            344 44666     9999999999888652      45566666655543    4444566788966  4477644

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>PRK09381 trxA thioredoxin; Provisional

Probab=96.05  E-value=0.022  Score=41.99  Aligned_cols=60  Identities=18%  Similarity=0.343  Sum_probs=41.5

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ..+++| |..     +|||.|..+...|++    +  ++.+-.+|++.++..    ....+-.++|.+++  +|+.++
T Consensus        21 ~~~vvv~f~~-----~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~~~G~~~~   89 (109)
T PRK09381         21 DGAILVDFWA-----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVAA   89 (109)
T ss_pred             CCeEEEEEEC-----CCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH----HHhCCCCcCCEEEEEeCCeEEE
Confidence            344555 555     999999999877753    3  356777888776654    33457788998855  887664

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.05  E-value=0.032  Score=51.27  Aligned_cols=117  Identities=16%  Similarity=0.265  Sum_probs=75.6

Q ss_pred             cCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCC---CeEEEEccCCHhHHHHHHHHhCCCC
Q psy221           21 NAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV---PYDSHDVLKDESIRNGIKEYTSWPT   97 (205)
Q Consensus        21 ~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV---~~~e~DI~~d~~~~~eL~~~~g~~t   97 (205)
                      +.-++...+++-+.++.+-......-|..     -+|..|-.+.+.|+-+.|   .+.-.-| +..-+++|..+. +-..
T Consensus        97 ~G~ppk~~q~vieqik~i~g~~~FETy~S-----ltC~nCPDVVQALN~msvlNp~I~H~~I-dGa~Fq~Evear-~IMa  169 (520)
T COG3634          97 GGHPPKEDQDVIEQIKAIDGDFHFETYFS-----LTCHNCPDVVQALNLMSVLNPRIKHTAI-DGALFQDEVEAR-NIMA  169 (520)
T ss_pred             cCCCCchhHHHHHHHHhcCCceeEEEEEE-----eeccCChHHHHHHHHHHhcCCCceeEEe-cchhhHhHHHhc-ccee
Confidence            33345557788888888877778888877     678888888888876654   2222222 245666777654 5568


Q ss_pred             ccEEeeCCeEeec----hhHHHHHHhcccH---HHHHhhcCCccccceeecccCCC
Q psy221           98 IPQVFINGEFVGG----CDILLKLHQSGEL---VEQLEKGDQKRKQFILINYISGD  146 (205)
Q Consensus        98 vPqvFI~G~~IGG----~del~~l~e~GeL---~~~L~~~~~~~~~~~~~~~gcGg  146 (205)
                      +|.||.||+..|.    .+++.+-..+|.-   .+.+..  ...||..++|+|..|
T Consensus       170 VPtvflnGe~fg~GRmtleeilaki~~gaa~~~ae~~~~--k~~yDVLvVGgGPAg  223 (520)
T COG3634         170 VPTVFLNGEEFGQGRMTLEEILAKIDTGAAKRDAEEFNA--KDAYDVLVVGGGPAG  223 (520)
T ss_pred             cceEEEcchhhcccceeHHHHHHHhcCCccccchHHhhc--cCCceEEEEcCCcch
Confidence            9999999998874    3455544444322   222222  136788888888876

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=96.05  E-value=0.052  Score=39.90  Aligned_cols=57  Identities=21%  Similarity=0.290  Sum_probs=36.3

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHHh----CC---CCeEEEEccCCHhHHHHHHHHhCCCCccEEe--eCCeE
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRM----HD---VPYDSHDVLKDESIRNGIKEYTSWPTIPQVF--INGEF  107 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~----~g---V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF--I~G~~  107 (205)
                      ..+|+| |..     +||+.|+.....|+.    ++   +.+..+|++ ++    ++.+..+-..+|.++  -+|+.
T Consensus        17 ~~~vvv~F~a-----~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~----~~~~~~~v~~~Pt~~~~~~g~~   83 (102)
T cd02948          17 KGLTVVDVYQ-----EWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TI----DTLKRYRGKCEPTFLFYKNGEL   83 (102)
T ss_pred             CCeEEEEEEC-----CcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CH----HHHHHcCCCcCcEEEEEECCEE
Confidence            344545 555     999999999888854    32   345666665 33    344555777888664  47764

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=95.98  E-value=0.034  Score=39.81  Aligned_cols=57  Identities=23%  Similarity=0.332  Sum_probs=38.5

Q ss_pred             cEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           43 KVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      +|+| |..     +||+.|......|.+.      .+.+-.+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        14 ~vlv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~   79 (96)
T cd02956          14 PVVVDFWA-----PRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQ----IAQQFGVQALPTVYLFAAGQPV   79 (96)
T ss_pred             eEEEEEEC-----CCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHH----HHHHcCCCCCCEEEEEeCCEEe
Confidence            4555 555     9999999998888643      24456777766654    444556778999864  67544

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library

Probab=95.96  E-value=0.033  Score=44.83  Aligned_cols=61  Identities=13%  Similarity=0.206  Sum_probs=41.0

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHh--CCCCccEE--eeCCeEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYT--SWPTIPQV--FINGEFVG  109 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~--g~~tvPqv--FI~G~~IG  109 (205)
                      ||.|..     +||+.|+.+...|++.       ++.+-.+|+++++++.+.+.-.+  +-..+|.+  |.+|+.++
T Consensus        51 vV~Fya-----~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~  122 (152)
T cd02962          51 LVEFFT-----TWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA  122 (152)
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence            455666     9999999998877432       36788899988886655543211  12337766  66887764

It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=95.95  E-value=0.039  Score=40.60  Aligned_cols=66  Identities=17%  Similarity=0.248  Sum_probs=37.4

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhC---------CCCeEEEEccCCHh----------------HHHHHHHHhCCC
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH---------DVPYDSHDVLKDES----------------IRNGIKEYTSWP   96 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~---------gV~~~e~DI~~d~~----------------~~~eL~~~~g~~   96 (205)
                      ..|++|+.     ++||+|++..+.+...         ++.+..+++..+..                ...++....|-.
T Consensus         7 ~~v~~F~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~   81 (112)
T PF13098_consen    7 PIVVVFTD-----PWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVN   81 (112)
T ss_dssp             EEEEEEE------TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--
T ss_pred             EEEEEEEC-----CCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCC
Confidence            34666777     9999999997776531         23445555554331                123566666888


Q ss_pred             CccEEee-C--Ce---Eeechh
Q psy221           97 TIPQVFI-N--GE---FVGGCD  112 (205)
Q Consensus        97 tvPqvFI-~--G~---~IGG~d  112 (205)
                      .+|.+++ |  |+   .+-|+-
T Consensus        82 gtPt~~~~d~~G~~v~~~~G~~  103 (112)
T PF13098_consen   82 GTPTIVFLDKDGKIVYRIPGYL  103 (112)
T ss_dssp             SSSEEEECTTTSCEEEEEESS-
T ss_pred             ccCEEEEEcCCCCEEEEecCCC
Confidence            8999865 4  66   344553

...

>PRK10996 thioredoxin 2; Provisional

Probab=95.84  E-value=0.078  Score=41.49  Aligned_cols=66  Identities=23%  Similarity=0.458  Sum_probs=42.2

Q ss_pred             HHHHHhcC-CcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--
Q psy221           34 SIDEMVKK-SKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--  103 (205)
Q Consensus        34 ~l~~~~~~-~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--  103 (205)
                      .++++++. ..|+| |..     +||+.|+.....|.+.      ++.+-.+|++.+++    +.+..+-..+|.+++  
T Consensus        44 ~~~~~i~~~k~vvv~F~a-----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~V~~~Ptlii~~  114 (139)
T PRK10996         44 TLDKLLQDDLPVVIDFWA-----PWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERE----LSARFRIRSIPTIMIFK  114 (139)
T ss_pred             HHHHHHhCCCeEEEEEEC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHH----HHHhcCCCccCEEEEEE
Confidence            34455543 34444 555     9999999987777542      35566777776654    344456677887755  


Q ss_pred             CCeEe
Q psy221          104 NGEFV  108 (205)
Q Consensus       104 ~G~~I  108 (205)
                      +|+.+
T Consensus       115 ~G~~v  119 (139)
T PRK10996        115 NGQVV  119 (139)
T ss_pred             CCEEE
Confidence            78755

>KOG4244|consensus

Probab=95.83  E-value=0.025  Score=49.58  Aligned_cols=89  Identities=21%  Similarity=0.288  Sum_probs=63.1

Q ss_pred             hhhhcCCCCCCChHHHHHHHHHhcCCcEEEEEee-CCCC-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221           17 SRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKG-VPEA-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~-~~~~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      ..||.....+.+.+   -.++-.+...|.+|.-. ++.. .-.|+|-++..+|+..+|+|+.++=        .++.++.
T Consensus        22 ~~f~t~ps~~~~p~---~hk~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~--------~~~~rSr   90 (281)
T KOG4244|consen   22 KKFFTKPSINPKPK---IHKTDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDC--------SLKRRSR   90 (281)
T ss_pred             ceeecCccCCCCcc---chhhccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccc--------cceeecc
Confidence            45666655444444   23455566777777532 2222 4567999999999999999999984        3444566


Q ss_pred             CCCccEEeeCCeEeechhHHHH
Q psy221           95 WPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        95 ~~tvPqvFI~G~~IGG~del~~  116 (205)
                      ..++|-|-.||++|.+.+.+..
T Consensus        91 ~G~lPFIELNGe~iaDS~~I~~  112 (281)
T KOG4244|consen   91 NGTLPFIELNGEHIADSDLIED  112 (281)
T ss_pred             CCCcceEEeCCeeccccHHHHH
Confidence            7799999999999999886543

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=95.82  E-value=0.073  Score=37.24  Aligned_cols=60  Identities=23%  Similarity=0.340  Sum_probs=38.4

Q ss_pred             HHHHhcCC-c-EEEEEeeCCCCCCChHHHHHHHHHHh----C----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           35 IDEMVKKS-K-VVVFMKGVPEAPRCGFSNAVVQILRM----H----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        35 l~~~~~~~-~-VvlYsk~~~~~~~Cp~C~~ak~lL~~----~----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +.+++.+. + +++|..     ++|++|..+...|+.    +    ++.+..+|.+.++    .+.+..+-..+|.+++
T Consensus         8 ~~~~i~~~~~~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~i~~~Pt~~~   77 (101)
T cd02961           8 FDELVKDSKDVLVEFYA-----PWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANN----DLCSEYGVRGYPTIKL   77 (101)
T ss_pred             HHHHHhCCCcEEEEEEC-----CCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchH----HHHHhCCCCCCCEEEE
Confidence            44455443 4 455666     999999999888854    3    3445555655433    4555567788998854

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=95.77  E-value=0.052  Score=38.97  Aligned_cols=63  Identities=17%  Similarity=0.322  Sum_probs=38.5

Q ss_pred             HHHhcCCcEEE-EEeeCCCCCCChHHHHHHHHHHhC---------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--
Q psy221           36 DEMVKKSKVVV-FMKGVPEAPRCGFSNAVVQILRMH---------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--  103 (205)
Q Consensus        36 ~~~~~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~---------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--  103 (205)
                      ++.+...+++| |..     +||+.|+.....|+..         .+.+-.+|.+.++.    +.+..+-..+|.+++  
T Consensus        11 ~~~~~~~~~lv~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~   81 (102)
T cd03005          11 DHHIAEGNHFVKFFA-----PWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRE----LCSEFQVRGYPTLLLFK   81 (102)
T ss_pred             HHHhhcCCEEEEEEC-----CCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChh----hHhhcCCCcCCEEEEEe
Confidence            34444444544 556     9999999987766432         34566666665553    333456678998754  


Q ss_pred             CCeE
Q psy221          104 NGEF  107 (205)
Q Consensus       104 ~G~~  107 (205)
                      +|+.
T Consensus        82 ~g~~   85 (102)
T cd03005          82 DGEK   85 (102)
T ss_pred             CCCe
Confidence            6643

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=95.72  E-value=0.063  Score=38.28  Aligned_cols=51  Identities=16%  Similarity=0.307  Sum_probs=34.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +++|..     +||+.|+.....|+..        ++.+..+|.+.++.    +.+..+-..+|.+++
T Consensus        17 ~i~f~~-----~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~----~~~~~~i~~~P~~~~   75 (102)
T TIGR01126        17 LVEFYA-----PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKD----LASRFGVSGFPTIKF   75 (102)
T ss_pred             EEEEEC-----CCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHH----HHHhCCCCcCCEEEE
Confidence            566777     9999999877766432        25566667666543    444457788998854

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=95.69  E-value=0.063  Score=41.70  Aligned_cols=71  Identities=6%  Similarity=-0.005  Sum_probs=43.4

Q ss_pred             HHHHhcCC-cEEEEEeeCCCCCCChHHHHHHH-HHHh------C--CCCeEEEEccCCHhHHHHHHH----HhCCCCccE
Q psy221           35 IDEMVKKS-KVVVFMKGVPEAPRCGFSNAVVQ-ILRM------H--DVPYDSHDVLKDESIRNGIKE----YTSWPTIPQ  100 (205)
Q Consensus        35 l~~~~~~~-~VvlYsk~~~~~~~Cp~C~~ak~-lL~~------~--gV~~~e~DI~~d~~~~~eL~~----~~g~~tvPq  100 (205)
                      +.++.+++ +|+|+..+    +||++|+.+.+ .+..      +  +.-+..+|+++.+++.+.+.+    ..|...+|.
T Consensus         8 l~~Ak~~~KpVll~f~a----~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt   83 (124)
T cd02955           8 FEKARREDKPIFLSIGY----STCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL   83 (124)
T ss_pred             HHHHHHcCCeEEEEEcc----CCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence            45555544 57665443    99999999864 3322      2  333456677666665443332    347778888


Q ss_pred             Eee---CCeEee
Q psy221          101 VFI---NGEFVG  109 (205)
Q Consensus       101 vFI---~G~~IG  109 (205)
                      +.+   +|+.+-
T Consensus        84 ~vfl~~~G~~~~   95 (124)
T cd02955          84 NVFLTPDLKPFF   95 (124)
T ss_pred             EEEECCCCCEEe
Confidence            855   577773

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PLN02817 glutathione dehydrogenase (ascorbate)

Probab=95.68  E-value=0.043  Score=47.84  Aligned_cols=63  Identities=19%  Similarity=0.300  Sum_probs=48.5

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      -.||+|.+++-+|++.|++|+.+.|+... .-+++.+++-...+|.+..+|..|-....+.+..
T Consensus        71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~~-~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL  133 (265)
T PLN02817         71 GDCPFCQRVLLTLEEKHLPYDMKLVDLTN-KPEWFLKISPEGKVPVVKLDEKWVADSDVITQAL  133 (265)
T ss_pred             CCCcHHHHHHHHHHHcCCCCEEEEeCcCc-CCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            56999999999999999999988776532 1244566666679999999998787666655543

>TIGR01262 maiA maleylacetoacetate isomerase

Probab=95.65  E-value=0.03  Score=45.77  Aligned_cols=63  Identities=17%  Similarity=0.169  Sum_probs=49.3

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccC-C--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLK-D--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~-d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      ..++++.+++-+|...||+|+.+.++. .  ....+++.+++-..++|.+..||..+-....+...
T Consensus         6 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~y   71 (210)
T TIGR01262         6 WRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEY   71 (210)
T ss_pred             CCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHH
Confidence            779999999999999999999988864 1  22235677777778999999999887776666554

Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=95.62  E-value=0.071  Score=39.24  Aligned_cols=62  Identities=24%  Similarity=0.386  Sum_probs=40.5

Q ss_pred             HHHhcCC-cE-EEEEeeCCCCCCChHHHHHHHHHHhC------------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221           36 DEMVKKS-KV-VVFMKGVPEAPRCGFSNAVVQILRMH------------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV  101 (205)
Q Consensus        36 ~~~~~~~-~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~------------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv  101 (205)
                      ++.++.+ .| |.|..     +||++|+.....|++.            .+.+-.+|.+.++    ++.+..+-.++|.+
T Consensus        12 ~~~i~~~~~vlv~F~a-----~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~----~l~~~~~v~~~Ptl   82 (108)
T cd02996          12 DDILQSAELVLVNFYA-----DWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKES----DIADRYRINKYPTL   82 (108)
T ss_pred             HHHHhcCCEEEEEEEC-----CCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH----HHHHhCCCCcCCEE
Confidence            3444443 33 44656     9999999999888532            2556677776664    45555677899988


Q ss_pred             ee--CCe
Q psy221          102 FI--NGE  106 (205)
Q Consensus       102 FI--~G~  106 (205)
                      ++  +|+
T Consensus        83 ~~~~~g~   89 (108)
T cd02996          83 KLFRNGM   89 (108)
T ss_pred             EEEeCCc
Confidence            54  665

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>KOG0406|consensus

Probab=95.57  E-value=0.073  Score=45.81  Aligned_cols=72  Identities=15%  Similarity=0.159  Sum_probs=55.7

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh-CCCCccEEeeCCeEeechhHHHHHHh
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT-SWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~-g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      ..|.||+.     -.|||..+++-.|+..||+|+.++++... --+.|.+.. -...+|++.-||+.|.-.-.+.+..+
T Consensus         8 ~~vrL~~~-----w~sPfa~R~~iaL~~KgI~yE~veedl~~-Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiD   80 (231)
T KOG0406|consen    8 GTVKLLGM-----WFSPFAQRVRIALKLKGIPYEYVEEDLTN-KSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYID   80 (231)
T ss_pred             CeEEEEEe-----ecChHHHHHHHHHHhcCCceEEEecCCCC-CCHHHHHhccccccCCEEEECCceehhhHHHHHHHH
Confidence            67999999     89999999999999999999998887542 113444444 45689999999999876665555433

>PLN02473 glutathione S-transferase

Probab=95.55  E-value=0.061  Score=44.23  Aligned_cols=69  Identities=10%  Similarity=0.065  Sum_probs=52.6

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +.||..     +.++++.+++-+|..+|++|+.+.++..  +....++.++.-..++|.+..||..|-...-+.+.
T Consensus         3 ~kLy~~-----~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~Y   73 (214)
T PLN02473          3 VKVYGQ-----IKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARY   73 (214)
T ss_pred             eEEecC-----CCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHH
Confidence            568877     8899999999999999999998866432  22334555566667899999999888777666664

>PRK10877 protein disulfide isomerase II DsbC; Provisional

Probab=95.54  E-value=0.066  Score=45.78  Aligned_cols=31  Identities=13%  Similarity=0.332  Sum_probs=24.1

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhC---CCCeEEE
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH---DVPYDSH   77 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~---gV~~~e~   77 (205)
                      ..|++|+.     +.||||++..+.|.++   +|.+..+
T Consensus       109 ~~I~vFtD-----p~CpyCkkl~~~l~~~~~~~v~v~~~  142 (232)
T PRK10877        109 HVITVFTD-----ITCGYCHKLHEQMKDYNALGITVRYL  142 (232)
T ss_pred             EEEEEEEC-----CCChHHHHHHHHHHHHhcCCeEEEEE
Confidence            45888998     9999999999988775   4555443

>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=95.50  E-value=0.085  Score=38.27  Aligned_cols=54  Identities=17%  Similarity=0.345  Sum_probs=36.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGE  106 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~  106 (205)
                      +|.|..     +||++|+.....|++.      .+.+-.+|++.++.    +.+..+-..+|.+++  +|+
T Consensus        22 ~v~f~a-----~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~g~   83 (101)
T cd03003          22 FVNFYS-----PRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRM----LCRSQGVNSYPSLYVFPSGM   83 (101)
T ss_pred             EEEEEC-----CCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHH----HHHHcCCCccCEEEEEcCCC
Confidence            344556     9999999998887543      24567788877654    344446678898844  665

This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.

>KOG0907|consensus

Probab=95.42  E-value=0.12  Score=39.15  Aligned_cols=68  Identities=19%  Similarity=0.224  Sum_probs=43.3

Q ss_pred             HHHHHHHHhcC-CcEEE-EEeeCCCCCCChHHHHHHHHHHhCC-----CCeEEEEccCCHhHHHHHHHHhCCCCccEEe-
Q psy221           31 VQKSIDEMVKK-SKVVV-FMKGVPEAPRCGFSNAVVQILRMHD-----VPYDSHDVLKDESIRNGIKEYTSWPTIPQVF-  102 (205)
Q Consensus        31 ~~~~l~~~~~~-~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~g-----V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF-  102 (205)
                      .......+... ..||| |+.     +||+.|+.+.-.+.++-     +.|-.+|+++    -.++..-.+-..+|.+. 
T Consensus        10 ~~~~~~~~~~~~kliVvdF~a-----~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde----~~~~~~~~~V~~~PTf~f   80 (106)
T KOG0907|consen   10 LDLVLSAAEAGDKLVVVDFYA-----TWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE----LEEVAKEFNVKAMPTFVF   80 (106)
T ss_pred             HHHHHHHhhCCCCeEEEEEEC-----CCCcchhhhhhHHHHHHHHCCCCEEEEEeccc----CHhHHHhcCceEeeEEEE
Confidence            33344444443 45566 555     99999999999997663     4566788877    23444444667889873 


Q ss_pred             -eCCeE
Q psy221          103 -INGEF  107 (205)
Q Consensus       103 -I~G~~  107 (205)
                       -+|+-
T Consensus        81 ~k~g~~   86 (106)
T KOG0907|consen   81 YKGGEE   86 (106)
T ss_pred             EECCEE
Confidence             36643

>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis

Probab=95.42  E-value=0.097  Score=43.59  Aligned_cols=67  Identities=18%  Similarity=0.185  Sum_probs=43.7

Q ss_pred             HHHHHHHhcC---CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221           32 QKSIDEMVKK---SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF  102 (205)
Q Consensus        32 ~~~l~~~~~~---~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF  102 (205)
                      .++..++.+.   ..||| |..     +||+.|+.+...|+.+     .+.|-.+|++..       ....+-..+|.++
T Consensus        90 ~~f~~eV~~as~~~~VVV~Fya-----~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~-------~~~~~i~~lPTll  157 (192)
T cd02988          90 PDYVREVTEASKDTWVVVHLYK-----DGIPLCRLLNQHLSELARKFPDTKFVKIISTQC-------IPNYPDKNLPTIL  157 (192)
T ss_pred             HHHHHHHHhcCCCCEEEEEEEC-----CCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HhhCCCCCCCEEE
Confidence            3444444433   24555 666     9999999999988654     366777776531       2345677899885


Q ss_pred             e--CCeEeec
Q psy221          103 I--NGEFVGG  110 (205)
Q Consensus       103 I--~G~~IGG  110 (205)
                      +  ||+.++-
T Consensus       158 iyk~G~~v~~  167 (192)
T cd02988         158 VYRNGDIVKQ  167 (192)
T ss_pred             EEECCEEEEE
Confidence            4  8876543

It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=95.41  E-value=0.091  Score=38.72  Aligned_cols=51  Identities=12%  Similarity=0.180  Sum_probs=34.0

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEcc-CCHhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVL-KDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~-~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +|.|..     +||++|+.....|+++     ++.+-.+|.+ .++    .+....+-..+|.+++
T Consensus        22 lV~F~a-----~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~----~l~~~~~V~~~PT~~l   78 (100)
T cd02999          22 AVLFYA-----SWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKP----SLLSRYGVVGFPTILL   78 (100)
T ss_pred             EEEEEC-----CCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCH----HHHHhcCCeecCEEEE
Confidence            344666     9999999999888544     4555566655 333    4455567778897753

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>PLN02378 glutathione S-transferase DHAR1

Probab=95.39  E-value=0.063  Score=44.63  Aligned_cols=62  Identities=16%  Similarity=0.335  Sum_probs=47.8

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      ..||+|.+|.-+|+..|++|+.+.|+.... .+++.++.-..++|.+..||..|--...+.+.
T Consensus        18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~-~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~Y   79 (213)
T PLN02378         18 GDCPFSQRALLTLEEKSLTYKIHLINLSDK-PQWFLDISPQGKVPVLKIDDKWVTDSDVIVGI   79 (213)
T ss_pred             CCCcchHHHHHHHHHcCCCCeEEEeCcccC-CHHHHHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence            779999999999999999999887765322 23566677778999999888777655555554

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=95.38  E-value=0.066  Score=41.04  Aligned_cols=60  Identities=13%  Similarity=0.107  Sum_probs=41.8

Q ss_pred             cEEEEEeeCCCCCC--ChHHHHHHHHHHhC----C--CCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeech
Q psy221           43 KVVVFMKGVPEAPR--CGFSNAVVQILRMH----D--VPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGGC  111 (205)
Q Consensus        43 ~VvlYsk~~~~~~~--Cp~C~~ak~lL~~~----g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG~  111 (205)
                      .|+.|..     +|  ||.|..+.-+|.+.    .  +.+-.+|++.++    ++....+-.++|.+  |-||+.++..
T Consensus        30 ~v~~f~~-----~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~----~la~~f~V~sIPTli~fkdGk~v~~~   99 (111)
T cd02965          30 LVLLLAG-----DPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ----ALAARFGVLRTPALLFFRDGRYVGVL   99 (111)
T ss_pred             EEEEecC-----CcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH----HHHHHcCCCcCCEEEEEECCEEEEEE
Confidence            4444555     64  99999999988654    2  345677777765    56666677888987  4489877654

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>COG3019 Predicted metal-binding protein [General function prediction only]

Probab=95.24  E-value=0.09  Score=42.00  Aligned_cols=73  Identities=18%  Similarity=0.307  Sum_probs=56.0

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC----CCccEEeeCCeEeech---hH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW----PTIPQVFINGEFVGGC---DI  113 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~----~tvPqvFI~G~~IGG~---de  113 (205)
                      ...+++|-.     |+|..|..=-+.|+.+|.++..++.+.-    ..|++..|-    .+-=...|||.+|-|.   ++
T Consensus        25 ~~~~~vyks-----PnCGCC~~w~~~mk~~Gf~Vk~~~~~d~----~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~a   95 (149)
T COG3019          25 ATEMVVYKS-----PNCGCCDEWAQHMKANGFEVKVVETDDF----LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEA   95 (149)
T ss_pred             eeeEEEEeC-----CCCccHHHHHHHHHhCCcEEEEeecCcH----HHHHHhcCCChhhccccEEEEcCEEEeccCCHHH
Confidence            456888888     9999999999999999988877775433    455555553    4667899999999885   67


Q ss_pred             HHHHHhccc
Q psy221          114 LLKLHQSGE  122 (205)
Q Consensus       114 l~~l~e~Ge  122 (205)
                      +.+|.+++.
T Consensus        96 I~~ll~~~p  104 (149)
T COG3019          96 IARLLAEKP  104 (149)
T ss_pred             HHHHHhCCC
Confidence            777766554

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=95.21  E-value=0.14  Score=36.70  Aligned_cols=45  Identities=16%  Similarity=0.237  Sum_probs=31.4

Q ss_pred             CCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           55 PRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +||+.|......|.+.      .+.+-.+|.+.++++    .+..+-..+|.+++
T Consensus        28 ~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~i~~~P~~~~   78 (103)
T cd03001          28 PWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSL----AQQYGVRGFPTIKV   78 (103)
T ss_pred             CCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHH----HHHCCCCccCEEEE
Confidence            9999999998877542      356677777666543    34446678997744

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=95.16  E-value=0.12  Score=37.51  Aligned_cols=53  Identities=28%  Similarity=0.385  Sum_probs=36.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NG  105 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G  105 (205)
                      +|.|..     +||+.|+.+...+++.      .+.+-.+|.+.+++    +.+..+-..+|.+++  +|
T Consensus        23 ~v~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~i~~~Pt~~~~~~g   83 (104)
T cd03004          23 LVDFYA-----PWCGPCQALLPELRKAARALKGKVKVGSVDCQKYES----LCQQANIRAYPTIRLYPGN   83 (104)
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHH----HHHHcCCCcccEEEEEcCC
Confidence            344666     9999999988777532      35677888776554    444457778898744  55

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]

Probab=95.15  E-value=0.032  Score=46.45  Aligned_cols=63  Identities=14%  Similarity=0.245  Sum_probs=47.3

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHHh
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLHQ  119 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~e  119 (205)
                      +.||||.+|+.++.-.+|+++.+-+..|.+.  -=..+.|+..||.+.- +|++.+-.=|+.....
T Consensus         7 dHCPfcvrarmi~Gl~nipve~~vL~nDDe~--Tp~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d   70 (215)
T COG2999           7 DHCPFCVRARMIFGLKNIPVELHVLLNDDEE--TPIRMIGQKQVPILQKEDGRAMPESLDIVHYVD   70 (215)
T ss_pred             ccChHHHHHHHHhhccCCChhhheeccCccc--ChhhhhcccccceEEccccccchhhhHHHHHHH
Confidence            8899999999999999999998877655432  1223458899999876 6788877656555433

>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait

Probab=94.98  E-value=0.065  Score=38.10  Aligned_cols=57  Identities=16%  Similarity=0.271  Sum_probs=43.7

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +..+.|.++.-+|+..|++|+.+++...+.       ......+|.|-+||+.|+...-+..+.
T Consensus        15 ~~~~~~~kv~~~L~elglpye~~~~~~~~~-------~~P~GkVP~L~~dg~vI~eS~aIl~yL   71 (74)
T cd03079          15 PDNASCLAVQTFLKMCNLPFNVRCRANAEF-------MSPSGKVPFIRVGNQIVSEFGPIVQFV   71 (74)
T ss_pred             CCCCCHHHHHHHHHHcCCCcEEEecCCccc-------cCCCCcccEEEECCEEEeCHHHHHHHH
Confidence            567889999999999999999887532111       112357999999999999888776654

Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.

>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases

Probab=94.96  E-value=0.19  Score=37.24  Aligned_cols=54  Identities=22%  Similarity=0.337  Sum_probs=34.4

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF  102 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF  102 (205)
                      .-++.|..     +||++|+.....|++.       ++.+-.+|++.+.  .....+..+...+|.++
T Consensus        23 ~vlv~f~a-----~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~--~~~~~~~~~v~~~Pti~   83 (109)
T cd02993          23 STLVVLYA-----PWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQ--REFAKEELQLKSFPTIL   83 (109)
T ss_pred             CEEEEEEC-----CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccc--hhhHHhhcCCCcCCEEE
Confidence            33455666     9999999999887543       3556666766521  12223345677899874

APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red

>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=94.95  E-value=0.24  Score=34.78  Aligned_cols=68  Identities=16%  Similarity=0.219  Sum_probs=46.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH--HhCCCCccEEeeCCeEeechhHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE--YTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~--~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .++|..     +..+.|.+++-+|+..|++|+.+.++..+++++ +..  ..-...+|.+.+||..+-...-+...
T Consensus         2 ~~Ly~~-----~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~-~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~Y   71 (79)
T cd03077           2 PVLHYF-----NGRGRMESIRWLLAAAGVEFEEKFIESAEDLEK-LKKDGSLMFQQVPMVEIDGMKLVQTRAILNY   71 (79)
T ss_pred             CEEEEe-----CCCChHHHHHHHHHHcCCCcEEEEeccHHHHHh-hccccCCCCCCCCEEEECCEEEeeHHHHHHH
Confidence            357766     677788999999999999999888765333211 111  11245899999998777655544443

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the

>PTZ00062 glutaredoxin; Provisional

Probab=94.81  E-value=0.12  Score=43.68  Aligned_cols=64  Identities=9%  Similarity=0.140  Sum_probs=40.8

Q ss_pred             HHHHHHhc--CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCC---CeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCC
Q psy221           33 KSIDEMVK--KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV---PYDSHDVLKDESIRNGIKEYTSWPTIPQV--FING  105 (205)
Q Consensus        33 ~~l~~~~~--~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV---~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G  105 (205)
                      +.+.++++  ...+|+|...    +|||.|+.+..+|.++--   .+..+.|+.+          .+-..+|.+  |-||
T Consensus         7 ee~~~~i~~~~g~~vl~f~a----~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d----------~~V~~vPtfv~~~~g   72 (204)
T PTZ00062          7 EEKDKLIESNTGKLVLYVKS----SKEPEYEQLMDVCNALVEDFPSLEFYVVNLA----------DANNEYGVFEFYQNS   72 (204)
T ss_pred             HHHHHHHhcCCCcEEEEEeC----CCCcchHHHHHHHHHHHHHCCCcEEEEEccc----------cCcccceEEEEEECC
Confidence            34455555  4566666643    999999999999976632   2334444333          466688965  3478


Q ss_pred             eEeec
Q psy221          106 EFVGG  110 (205)
Q Consensus       106 ~~IGG  110 (205)
                      +.|+-
T Consensus        73 ~~i~r   77 (204)
T PTZ00062         73 QLINS   77 (204)
T ss_pred             EEEee
Confidence            77764

>PF13728 TraF: F plasmid transfer operon protein

Probab=94.72  E-value=0.14  Score=43.44  Aligned_cols=69  Identities=13%  Similarity=0.231  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHH----HhCCCCeEEEEccCC-------HhHHHHHHHHhCCCCc
Q psy221           30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL----RMHDVPYDSHDVLKD-------ESIRNGIKEYTSWPTI   98 (205)
Q Consensus        30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL----~~~gV~~~e~DI~~d-------~~~~~eL~~~~g~~tv   98 (205)
                      +-.+.++++.+...+++|..     ++|++|.....+|    +++|+++..++++..       ...-..+.+..|-..+
T Consensus       110 ~~~~~l~~la~~~gL~~F~~-----~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~  184 (215)
T PF13728_consen  110 KRDKALKQLAQKYGLFFFYR-----SDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVT  184 (215)
T ss_pred             HHHHHHHHHhhCeEEEEEEc-----CCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcC
Confidence            34455667777888999999     8999999888777    467888888888632       1112345555677899


Q ss_pred             cEEee
Q psy221           99 PQVFI  103 (205)
Q Consensus        99 PqvFI  103 (205)
                      |.+|+
T Consensus       185 Pal~L  189 (215)
T PF13728_consen  185 PALFL  189 (215)
T ss_pred             CEEEE
Confidence            99987

>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox

Probab=94.58  E-value=0.073  Score=40.57  Aligned_cols=55  Identities=13%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGE  106 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~  106 (205)
                      +|.|..     +||++|+.+...|++.      .+.+-.+|++.++..   ..+..+-.++|.+  |.+|+
T Consensus        33 lV~FyA-----~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l---~~~~~~I~~~PTl~lf~~g~   95 (113)
T cd03006          33 LVMYYA-----PWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGK---CRKQKHFFYFPVIHLYYRSR   95 (113)
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHH---HHHhcCCcccCEEEEEECCc
Confidence            344667     9999999998888654      255677787766643   2223344566766  55664

ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.

>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1

Probab=94.57  E-value=0.14  Score=39.54  Aligned_cols=62  Identities=15%  Similarity=0.223  Sum_probs=37.5

Q ss_pred             CcEEE-EEee-CCC-CCCChHHHHHHHHHH----hC--CCCeEEEEccCCHhH---HHHHHHHhCCC-CccEEee
Q psy221           42 SKVVV-FMKG-VPE-APRCGFSNAVVQILR----MH--DVPYDSHDVLKDESI---RNGIKEYTSWP-TIPQVFI  103 (205)
Q Consensus        42 ~~Vvl-Ysk~-~~~-~~~Cp~C~~ak~lL~----~~--gV~~~e~DI~~d~~~---~~eL~~~~g~~-tvPqvFI  103 (205)
                      .+|+| |..+ .+. .+||+.|+.+..+|+    ++  ++.+-.+|++..+..   ...++...+-. .+|.+.+
T Consensus        22 ~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~   96 (119)
T cd02952          22 KPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLR   96 (119)
T ss_pred             CeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEE
Confidence            45555 4442 232 279999998877664    33  477888888764421   13444444445 8998855

TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.

>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi

Probab=94.47  E-value=0.47  Score=33.17  Aligned_cols=57  Identities=12%  Similarity=0.157  Sum_probs=44.2

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      +..|+|-++..+|+-.+++|+.+... ++.       .+....+|.|..+|+.|++++.+.+..+
T Consensus        14 s~sp~clk~~~~Lr~~~~~~~v~~~~-n~~-------~sp~gkLP~l~~~~~~i~d~~~Ii~~L~   70 (73)
T cd03078          14 SVDPECLAVLAYLKFAGAPLKVVPSN-NPW-------RSPTGKLPALLTSGTKISGPEKIIEYLR   70 (73)
T ss_pred             cCCHHHHHHHHHHHcCCCCEEEEecC-CCC-------CCCCCccCEEEECCEEecChHHHHHHHH
Confidence            56799999999999999999766432 221       1234569999999999999998887644

Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=94.45  E-value=0.16  Score=36.97  Aligned_cols=53  Identities=17%  Similarity=0.221  Sum_probs=34.8

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      ++.|..     +||++|+.....|++.      .+.+-.+|++.++  ...+....+-..+|.+++
T Consensus        22 lv~f~a-----~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~--~~~~~~~~~i~~~Pt~~~   80 (109)
T cd03002          22 LVEFYA-----PWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK--NKPLCGKYGVQGFPTLKV   80 (109)
T ss_pred             EEEEEC-----CCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc--cHHHHHHcCCCcCCEEEE
Confidence            455666     9999999987777543      2445566766532  234455557788998865

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=94.40  E-value=0.46  Score=37.94  Aligned_cols=29  Identities=7%  Similarity=0.082  Sum_probs=20.7

Q ss_pred             HHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHh
Q psy221           37 EMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRM   69 (205)
Q Consensus        37 ~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~   69 (205)
                      ...+...|+||.-.    +|||.|++..-.|.+
T Consensus        21 s~~kgk~vlL~FwA----sWCppCr~e~P~L~~   49 (146)
T cd03008          21 ARLENRVLLLFFGA----VVSPQCQLFAPKLKD   49 (146)
T ss_pred             HHhCCCEEEEEEEC----CCChhHHHHHHHHHH
Confidence            33455666665553    899999998888854

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=94.27  E-value=0.23  Score=38.99  Aligned_cols=62  Identities=11%  Similarity=0.063  Sum_probs=38.7

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe-e--CCeEe
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF-I--NGEFV  108 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF-I--~G~~I  108 (205)
                      ..+|+|+..+    +||++|......|.++      .+.|..+|++.+.  ...+....+-..+|.++ +  +|+.+
T Consensus        20 gk~vvV~F~A----~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~--~~~~~~~~~V~~iPt~v~~~~~G~~v   90 (142)
T cd02950          20 GKPTLVEFYA----DWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK--WLPEIDRYRVDGIPHFVFLDREGNEE   90 (142)
T ss_pred             CCEEEEEEEC----CcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc--cHHHHHHcCCCCCCEEEEECCCCCEE
Confidence            3445554443    9999999998888643      2456666776432  12344455778899874 4  46544

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=94.25  E-value=0.19  Score=35.94  Aligned_cols=51  Identities=18%  Similarity=0.304  Sum_probs=33.1

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C----CCCeEEEEccC-CHhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H----DVPYDSHDVLK-DESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~----gV~~~e~DI~~-d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      ++.|..     +||+.|+.....+.+    +    ++.+-.+|.+. ++.    +....+-..+|.+++
T Consensus        22 ~v~f~a-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~i~~~P~~~~   81 (105)
T cd02998          22 LVEFYA-----PWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKD----LAKKYGVSGFPTLKF   81 (105)
T ss_pred             EEEEEC-----CCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchh----hHHhCCCCCcCEEEE
Confidence            455666     999999988877744    2    24455666665 443    333346678998865

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold

Probab=94.20  E-value=0.24  Score=40.71  Aligned_cols=34  Identities=26%  Similarity=0.419  Sum_probs=25.7

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHh--CCCCeEEEEc
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRM--HDVPYDSHDV   79 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~--~gV~~~e~DI   79 (205)
                      ...|++|+.     +.||+|.++...|..  .+|.+..+.+
T Consensus        78 ~~~i~~f~D-----~~Cp~C~~~~~~l~~~~~~v~v~~~~~  113 (197)
T cd03020          78 KRVVYVFTD-----PDCPYCRKLEKELKPNADGVTVRIFPV  113 (197)
T ss_pred             CEEEEEEEC-----CCCccHHHHHHHHhhccCceEEEEEEc
Confidence            456788888     999999999999973  4555555543

They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.

>KOG1422|consensus

Probab=94.18  E-value=0.19  Score=42.72  Aligned_cols=62  Identities=15%  Similarity=0.300  Sum_probs=50.8

Q ss_pred             CCChHHHHHHHHHHhCCCCeEE--EEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           55 PRCGFSNAVVQILRMHDVPYDS--HDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e--~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      -.||+|+++-..|...+++|..  +|+..-+   +.++.++....+|.|-.|++.+-..+.+.+..|
T Consensus        19 Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp---~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Le   82 (221)
T KOG1422|consen   19 GDCPFCQRLFMTLELKGVPFKVTTVDLSRKP---EWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLE   82 (221)
T ss_pred             CCChhHHHHHHHHHHcCCCceEEEeecCCCc---HHHHhhCCCCCCCeEEeCCceeccHHHHHHHHH
Confidence            6799999999999999998754  5555555   477788888999999999999988887766544

>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins

Probab=93.92  E-value=0.18  Score=35.00  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=24.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEcc
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVL   80 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~   80 (205)
                      |++|..     +.||+|..+...|++.      ++.+..+.+.
T Consensus         1 i~~f~d-----~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~   38 (98)
T cd02972           1 IVEFFD-----PLCPYCYLFEPELEKLLYADDGGVRVVYRPFP   38 (98)
T ss_pred             CeEEEC-----CCCHhHHhhhHHHHHHHhhcCCcEEEEEeccc
Confidence            467888     9999999999999764      4556666553

Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.

>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.85  E-value=0.23  Score=40.80  Aligned_cols=68  Identities=15%  Similarity=0.211  Sum_probs=52.0

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH-hHHHHHHHHhCCCCccEEeeCCe-EeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE-SIRNGIKEYTSWPTIPQVFINGE-FVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~-~~~~eL~~~~g~~tvPqvFI~G~-~IGG~del~~l  117 (205)
                      .+|..     +.+|+|.+++-.|.++|++|+.+.|+... ....++.+++-..+||.+..+|- .|-....|.+.
T Consensus         2 ~L~~~-----~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~Y   71 (211)
T COG0625           2 KLYGS-----PTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEY   71 (211)
T ss_pred             eeecC-----CCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHH
Confidence            45666     77799999999999999999999988764 45567878877889999998874 45444444443

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=93.84  E-value=0.21  Score=41.43  Aligned_cols=65  Identities=18%  Similarity=0.304  Sum_probs=43.1

Q ss_pred             cEEEEEeeCCCCCCChHHHHH----HHHHHhCCCCeEEEEccCCH-----hH----HHHHHHHhCC--CCccEEee---C
Q psy221           43 KVVVFMKGVPEAPRCGFSNAV----VQILRMHDVPYDSHDVLKDE-----SI----RNGIKEYTSW--PTIPQVFI---N  104 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~a----k~lL~~~gV~~~e~DI~~d~-----~~----~~eL~~~~g~--~tvPqvFI---~  104 (205)
                      ++++|..     +|||+|++.    +++-+++++++.-++++.+.     .+    ...+.+..|.  ..+|..|+   +
T Consensus        72 ~lV~Fwa-----swCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~  146 (181)
T PRK13728         72 KVVLFMQ-----GHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVN  146 (181)
T ss_pred             eEEEEEC-----CCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCC
Confidence            4888999     999999998    55556778887777766431     11    2334444553  58999977   5


Q ss_pred             Ce-----Eeechh
Q psy221          105 GE-----FVGGCD  112 (205)
Q Consensus       105 G~-----~IGG~d  112 (205)
                      |+     ++|..+
T Consensus       147 G~i~~~~~~G~~~  159 (181)
T PRK13728        147 TLEALPLLQGATD  159 (181)
T ss_pred             CcEEEEEEECCCC
Confidence            53     346554

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=93.80  E-value=0.36  Score=46.55  Aligned_cols=69  Identities=12%  Similarity=0.181  Sum_probs=44.2

Q ss_pred             HHHHHHHHHhcC-CcEEE-EEeeCCCCCCChHHHHHHHHH-------Hh-CCCCeEEEEccCCHhHHHHHHHHhCCCCcc
Q psy221           30 DVQKSIDEMVKK-SKVVV-FMKGVPEAPRCGFSNAVVQIL-------RM-HDVPYDSHDVLKDESIRNGIKEYTSWPTIP   99 (205)
Q Consensus        30 ~~~~~l~~~~~~-~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL-------~~-~gV~~~e~DI~~d~~~~~eL~~~~g~~tvP   99 (205)
                      ++++.+++..++ .+|+| |..     +||+.|+..+...       +. .++.+-.+|++.+.+...++.+..+...+|
T Consensus       462 ~l~~~l~~a~~~gK~VlVdF~A-----~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~g~P  536 (571)
T PRK00293        462 ELDQALAEAKGKGKPVMLDLYA-----DWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVLGLP  536 (571)
T ss_pred             HHHHHHHHHHhcCCcEEEEEEC-----CcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCCCCC
Confidence            445555555443 45655 555     9999999876542       12 246677788887644445566666888899


Q ss_pred             EEee
Q psy221          100 QVFI  103 (205)
Q Consensus       100 qvFI  103 (205)
                      .+++
T Consensus       537 t~~~  540 (571)
T PRK00293        537 TILF  540 (571)
T ss_pred             EEEE
Confidence            8855

>TIGR02740 TraF-like TraF-like protein

Probab=93.79  E-value=0.25  Score=43.27  Aligned_cols=64  Identities=22%  Similarity=0.344  Sum_probs=41.6

Q ss_pred             HHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHH----hCCCCeEEEEccCCHh-------HHHHHHHHhCCCCccEEee
Q psy221           35 IDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILR----MHDVPYDSHDVLKDES-------IRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        35 l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~----~~gV~~~e~DI~~d~~-------~~~eL~~~~g~~tvPqvFI  103 (205)
                      +.++.....++.|..     +||++|.....+|+    ++|+.+..++++.+..       .-..+.+..|-..+|.+|+
T Consensus       161 l~~l~~k~~Lv~F~A-----swCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~L  235 (271)
T TIGR02740       161 MKDLAKKSGLFFFFK-----SDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFL  235 (271)
T ss_pred             HHHhcCCeEEEEEEC-----CCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEE
Confidence            334444445555667     89999998887774    5677777777765321       0123455567889999966

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>PRK10357 putative glutathione S-transferase; Provisional

Probab=93.71  E-value=0.24  Score=40.26  Aligned_cols=66  Identities=15%  Similarity=0.269  Sum_probs=47.3

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLK  116 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~  116 (205)
                      .+|..     ..||++.+++-+|+..||+|+.++++.... ..++.+++...++|.+.. +|..+-....|.+
T Consensus         2 ~Ly~~-----~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~   68 (202)
T PRK10357          2 KLIGS-----YTSPFVRKISILLLEKGITFEFVNELPYNA-DNGVAQYNPLGKVPALVTEEGECWFDSPIIAE   68 (202)
T ss_pred             eeecC-----CCCchHHHHHHHHHHcCCCCeEEecCCCCC-chhhhhcCCccCCCeEEeCCCCeeecHHHHHH
Confidence            46777     889999999999999999999988765321 134445566678999985 5655544444433

>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol

Probab=93.59  E-value=1  Score=34.18  Aligned_cols=72  Identities=28%  Similarity=0.405  Sum_probs=49.5

Q ss_pred             HHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCC-CccEEee--C
Q psy221           34 SIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWP-TIPQVFI--N  104 (205)
Q Consensus        34 ~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~-tvPqvFI--~  104 (205)
                      .+.+.....+++||--|    .+||=+..|..-|++.      .+++-.+||-++..+-.++.+.+|-. .-||+++  |
T Consensus        12 ~i~~~S~~~~~~iFKHS----t~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ili~~   87 (105)
T PF11009_consen   12 EILEESKEKPVLIFKHS----TRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQVILIKN   87 (105)
T ss_dssp             HHHHH---SEEEEEEE-----TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSEEEEEET
T ss_pred             HHHHhcccCcEEEEEeC----CCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEEEEC
Confidence            33444557889999886    5699999998888543      38899999999999999999988854 5699866  8


Q ss_pred             CeEee
Q psy221          105 GEFVG  109 (205)
Q Consensus       105 G~~IG  109 (205)
                      |+.+=
T Consensus        88 g~~v~   92 (105)
T PF11009_consen   88 GKVVW   92 (105)
T ss_dssp             TEEEE
T ss_pred             CEEEE
Confidence            87663

The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.

>PTZ00102 disulphide isomerase; Provisional

Probab=93.43  E-value=0.63  Score=42.85  Aligned_cols=64  Identities=16%  Similarity=0.359  Sum_probs=39.0

Q ss_pred             HHHHHhcCC--cEEEEEeeCCCCCCChHHHHHHHHHH-------hC--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221           34 SIDEMVKKS--KVVVFMKGVPEAPRCGFSNAVVQILR-------MH--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF  102 (205)
Q Consensus        34 ~l~~~~~~~--~VvlYsk~~~~~~~Cp~C~~ak~lL~-------~~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF  102 (205)
                      .++++++.+  -+|.|..     +||++|+++...+.       ..  .+.+-.+|.+.+.+    +.+..+-..+|.++
T Consensus        41 ~f~~~i~~~~~~lv~f~a-----~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~----l~~~~~i~~~Pt~~  111 (477)
T PTZ00102         41 TFDKFITENEIVLVKFYA-----PWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEME----LAQEFGVRGYPTIK  111 (477)
T ss_pred             hHHHHHhcCCcEEEEEEC-----CCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHH----HHHhcCCCcccEEE
Confidence            345555443  3455666     99999998875443       22  35667777766553    44445667788774


Q ss_pred             e--CCe
Q psy221          103 I--NGE  106 (205)
Q Consensus       103 I--~G~  106 (205)
                      +  +|+
T Consensus       112 ~~~~g~  117 (477)
T PTZ00102        112 FFNKGN  117 (477)
T ss_pred             EEECCc
Confidence            4  554

>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A

Probab=93.43  E-value=0.34  Score=34.05  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhc-CCcEEEEEeeCCCCCCChHHHHHHHHH
Q psy221           30 DVQKSIDEMVK-KSKVVVFMKGVPEAPRCGFSNAVVQIL   67 (205)
Q Consensus        30 ~~~~~l~~~~~-~~~VvlYsk~~~~~~~Cp~C~~ak~lL   67 (205)
                      ++++.+.++.+ ..+|+|+..+    +||++|+...+.+
T Consensus         5 d~~~al~~A~~~~kpvlv~f~a----~wC~~C~~l~~~~   39 (82)
T PF13899_consen    5 DYEEALAEAKKEGKPVLVDFGA----DWCPPCKKLEREV   39 (82)
T ss_dssp             SHHHHHHHHHHHTSEEEEEEET----TTTHHHHHHHHHT
T ss_pred             hHHHHHHHHHHcCCCEEEEEEC----CCCHhHHHHHHHH
Confidence            45556666665 4466665544    9999999998877

...

>PLN00410 U5 snRNP protein, DIM1 family; Provisional

Probab=93.38  E-value=0.32  Score=38.84  Aligned_cols=57  Identities=14%  Similarity=0.085  Sum_probs=37.4

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhCC------CCeEEEEccCCHhHHHHHHHHhCCCCccEE-ee-CCe
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMHD------VPYDSHDVLKDESIRNGIKEYTSWPTIPQV-FI-NGE  106 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~g------V~~~e~DI~~d~~~~~eL~~~~g~~tvPqv-FI-~G~  106 (205)
                      ..||| |..     +||+.|+.+-.+|++.-      +.+-.+||++.+++-+++.-. +  ..|.+ |. +|+
T Consensus        24 ~lVVvdF~A-----~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~-~--~~t~~~ffk~g~   89 (142)
T PLN00410         24 RLVVIRFGH-----DWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELY-D--PCTVMFFFRNKH   89 (142)
T ss_pred             CEEEEEEEC-----CCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCcc-C--CCcEEEEEECCe
Confidence            34444 777     99999999999987652      446788998888665444322 1  34555 34 554

>PLN02395 glutathione S-transferase

Probab=93.37  E-value=0.48  Score=38.82  Aligned_cols=70  Identities=9%  Similarity=0.048  Sum_probs=51.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      +.||..     ..+ .+.+++-+|...|++|+.+.++..  ....+++.+++-..++|.+..+|..+-....+.+..+
T Consensus         3 ~~ly~~-----~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~   74 (215)
T PLN02395          3 LKVYGP-----AFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYA   74 (215)
T ss_pred             EEEEcC-----CcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            678865     443 369999999999999999887643  2223567777767799999988877777666665433

>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione

Probab=93.37  E-value=0.7  Score=32.10  Aligned_cols=58  Identities=16%  Similarity=0.153  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCC-CCccEEeeC-CeEeechhHHHH
Q psy221           59 FSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSW-PTIPQVFIN-GEFVGGCDILLK  116 (205)
Q Consensus        59 ~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~-~tvPqvFI~-G~~IGG~del~~  116 (205)
                      .+..++-+|+..|++|+.+.++.  .....+++.+..-. ..+|.+..+ |..+-..-.+..
T Consensus        11 ~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~   72 (76)
T PF02798_consen   11 RSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILR   72 (76)
T ss_dssp             TTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHH
T ss_pred             chHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHH
Confidence            67899999999999999887764  33333677776666 799999999 888766555444

The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=93.33  E-value=0.57  Score=36.16  Aligned_cols=67  Identities=13%  Similarity=0.218  Sum_probs=43.9

Q ss_pred             HHHHhcCC--cEEEEEeeCCCCCCCh--HHH----------HHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221           35 IDEMVKKS--KVVVFMKGVPEAPRCG--FSN----------AVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQ  100 (205)
Q Consensus        35 l~~~~~~~--~VvlYsk~~~~~~~Cp--~C~----------~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPq  100 (205)
                      +++.+.++  .||+|...    .||+  +|+          .+.++|+..+|.+-.+|++++++    |.+..|-..+|.
T Consensus        19 F~~~v~~~~~~vvv~f~a----~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~----La~~~~I~~iPT   90 (120)
T cd03065          19 YKQVLKKYDVLCLLYHEP----VESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAK----VAKKLGLDEEDS   90 (120)
T ss_pred             HHHHHHhCCceEEEEECC----CcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHH----HHHHcCCccccE
Confidence            44445433  56666652    5664  496          34555667789999999998864    444556677887


Q ss_pred             E--eeCCeEee
Q psy221          101 V--FINGEFVG  109 (205)
Q Consensus       101 v--FI~G~~IG  109 (205)
                      +  |-||+.+.
T Consensus        91 l~lfk~G~~v~  101 (120)
T cd03065          91 IYVFKDDEVIE  101 (120)
T ss_pred             EEEEECCEEEE
Confidence            7  66898653

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=93.31  E-value=0.35  Score=41.31  Aligned_cols=56  Identities=14%  Similarity=0.238  Sum_probs=37.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC----C--CCeEEEEccCCHhHHHHHHHHhCCCCccEEe--eCCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH----D--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVF--INGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~----g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF--I~G~~I  108 (205)
                      +|.|..     +||++|+.....+++.    +  +.+..+|.+.++    .+.+..+-..+|.++  -+|+.+
T Consensus        56 lV~FyA-----pWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~----~l~~~~~I~~~PTl~~f~~G~~v  119 (224)
T PTZ00443         56 FVKFYA-----PWCSHCRKMAPAWERLAKALKGQVNVADLDATRAL----NLAKRFAIKGYPTLLLFDKGKMY  119 (224)
T ss_pred             EEEEEC-----CCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccH----HHHHHcCCCcCCEEEEEECCEEE
Confidence            455666     9999999998887543    2  455666666554    344555777888774  477654

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=93.23  E-value=0.29  Score=34.99  Aligned_cols=57  Identities=25%  Similarity=0.388  Sum_probs=34.8

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeE
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEF  107 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~  107 (205)
                      ++.|..     +||++|++....|...        .+.+-.+|.+.+.  ...+....+-..+|.+++  +|+.
T Consensus        21 ~v~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~~~~~i~~~Pt~~~~~~g~~   87 (104)
T cd02997          21 LVMFYA-----PWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPE--HDALKEEYNVKGFPTFKYFENGKF   87 (104)
T ss_pred             EEEEEC-----CCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCc--cHHHHHhCCCccccEEEEEeCCCe
Confidence            455666     9999999987655322        2445566766521  124444456678888744  5553

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins

Probab=93.07  E-value=0.4  Score=37.42  Aligned_cols=53  Identities=15%  Similarity=0.293  Sum_probs=34.0

Q ss_pred             HHHHHHHHhCCCCeEEEEccCCHh-------HHHHHHHHhCCCCccEEeeCCeEe--echhHH
Q psy221           61 NAVVQILRMHDVPYDSHDVLKDES-------IRNGIKEYTSWPTIPQVFINGEFV--GGCDIL  114 (205)
Q Consensus        61 ~~ak~lL~~~gV~~~e~DI~~d~~-------~~~eL~~~~g~~tvPqvFI~G~~I--GG~del  114 (205)
                      ..+.+.|++.|++++.+++.++|.       +.+.|.. .|...+|.++|||+.+  |.+=..
T Consensus        30 a~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~-~G~e~LPitlVdGeiv~~G~YPt~   91 (123)
T PF06953_consen   30 AADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQT-EGAEALPITLVDGEIVKTGRYPTN   91 (123)
T ss_dssp             HHHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHH-H-GGG-SEEEETTEEEEESS---H
T ss_pred             HHHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHH-cCcccCCEEEECCEEEEecCCCCH
Confidence            355667789999999999998753       3333332 4888999999999865  666543

ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.

>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein

Probab=92.99  E-value=0.51  Score=35.52  Aligned_cols=54  Identities=17%  Similarity=0.200  Sum_probs=33.6

Q ss_pred             cEEE-EEeeCCCCCCChHHHHHHHHHHhCC---------CCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           43 KVVV-FMKGVPEAPRCGFSNAVVQILRMHD---------VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~g---------V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      .|+| |..     +||+.|......+++..         +.+-.+|.+.+.  ..++.+..+...+|++++
T Consensus        21 ~vvV~f~a-----~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~--~~~~~~~~~i~~~Pt~~l   84 (114)
T cd02992          21 AWLVEFYA-----SWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE--NVALCRDFGVTGYPTLRY   84 (114)
T ss_pred             eEEEEEEC-----CCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh--hHHHHHhCCCCCCCEEEE
Confidence            4544 556     99999999988875431         334444543322  234555557778998865

QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.

>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.89  E-value=1.1  Score=36.73  Aligned_cols=69  Identities=10%  Similarity=0.160  Sum_probs=41.0

Q ss_pred             HHHHHHHHHhcCCc--EEEEEeeCCCCCCChHHHHHHHHHHh------C---CCCeEEEEccCC------------HhHH
Q psy221           30 DVQKSIDEMVKKSK--VVVFMKGVPEAPRCGFSNAVVQILRM------H---DVPYDSHDVLKD------------ESIR   86 (205)
Q Consensus        30 ~~~~~l~~~~~~~~--VvlYsk~~~~~~~Cp~C~~ak~lL~~------~---gV~~~e~DI~~d------------~~~~   86 (205)
                      ++.+..+.+...++  +++|..     ++|++|.+.|.-+..      +   ...+-+++++..            ..-.
T Consensus        30 ~~~~d~ksi~~~~Kylllmfes-----~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~  104 (182)
T COG2143          30 DVFDDNKSISPNDKYLLLMFES-----NGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMST  104 (182)
T ss_pred             hhHHHHHhcCccCcEEEEEEcC-----CCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecH
Confidence            34566666665554  566777     999999998876521      1   112233444321            1123


Q ss_pred             HHHHHHhCCCCccEEee
Q psy221           87 NGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        87 ~eL~~~~g~~tvPqvFI  103 (205)
                      ++|....+.++.|.++.
T Consensus       105 ~ELa~kf~vrstPtfvF  121 (182)
T COG2143         105 EELAQKFAVRSTPTFVF  121 (182)
T ss_pred             HHHHHHhccccCceEEE
Confidence            47777777788887744

>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional

Probab=92.36  E-value=0.77  Score=37.83  Aligned_cols=54  Identities=13%  Similarity=0.195  Sum_probs=41.5

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +.||..     + .+.|.+++-+|+++||+|+.++|+..  +....++.++.-...+|.+..
T Consensus         2 ~~Ly~~-----~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~   57 (215)
T PRK13972          2 IDLYFA-----P-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVD   57 (215)
T ss_pred             eEEEEC-----C-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEe
Confidence            457765     4 58899999999999999998887643  223356777777779999987

>PRK11752 putative S-transferase; Provisional

Probab=92.25  E-value=0.65  Score=40.12  Aligned_cols=85  Identities=15%  Similarity=0.139  Sum_probs=58.6

Q ss_pred             CCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccC--CHhHHHHHHHHhCCCC
Q psy221           26 PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLK--DESIRNGIKEYTSWPT   97 (205)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~--d~~~~~eL~~~~g~~t   97 (205)
                      |.+....+.+. ....+++.||+.     + +++|.+|+-+|++.      |++|+.+.|+.  .+....++.++.-..+
T Consensus        28 ~~~~~~~~~~~-~~~~~~~~Ly~~-----~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~Gk  100 (264)
T PRK11752         28 PVAGATHEKTL-PVGKHPLQLYSL-----G-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSK  100 (264)
T ss_pred             CCCCcchhccc-CCCCCCeEEecC-----C-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCC
Confidence            44544445443 667789999976     4 89999999999986      88898877653  2223456777766778


Q ss_pred             ccEEeeCC----eEeechhHHHHH
Q psy221           98 IPQVFING----EFVGGCDILLKL  117 (205)
Q Consensus        98 vPqvFI~G----~~IGG~del~~l  117 (205)
                      +|.+..++    ..+-....|.+.
T Consensus       101 VP~Lv~~dg~~~~~L~ES~AIl~Y  124 (264)
T PRK11752        101 IPALLDRSGNPPIRVFESGAILLY  124 (264)
T ss_pred             CCEEEeCCCCCCeEEEcHHHHHHH
Confidence            99998753    355555555543

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=91.98  E-value=0.66  Score=40.52  Aligned_cols=69  Identities=10%  Similarity=0.210  Sum_probs=50.4

Q ss_pred             HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHH----HhCCCCeEEEEccCC--Hh-----HHHHHHHHhCCCCc
Q psy221           30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL----RMHDVPYDSHDVLKD--ES-----IRNGIKEYTSWPTI   98 (205)
Q Consensus        30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL----~~~gV~~~e~DI~~d--~~-----~~~eL~~~~g~~tv   98 (205)
                      +-.+.++++.+...+++|..     +.||+|.+.--+|    +.+|+++..++++..  +.     .-..+.+..|-..+
T Consensus       140 ~~~~~i~~la~~~gL~fFy~-----~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~  214 (256)
T TIGR02739       140 QKEKAIQQLSQSYGLFFFYR-----GKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYF  214 (256)
T ss_pred             HHHHHHHHHHhceeEEEEEC-----CCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccC
Confidence            34556677778889999999     8999999987777    567988888888753  11     11234444577789


Q ss_pred             cEEee
Q psy221           99 PQVFI  103 (205)
Q Consensus        99 PqvFI  103 (205)
                      |.+|+
T Consensus       215 Pal~L  219 (256)
T TIGR02739       215 PALYL  219 (256)
T ss_pred             ceEEE
Confidence            99977

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=91.52  E-value=1  Score=34.02  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=16.6

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILR   68 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~   68 (205)
                      ...|+||.-.    +||+.|.+....|.
T Consensus        18 gk~vll~Fwa----~wC~~C~~~~p~l~   41 (131)
T cd03009          18 GKTVGLYFSA----SWCPPCRAFTPKLV   41 (131)
T ss_pred             CcEEEEEEEC----CCChHHHHHhHHHH
Confidence            3456555443    89999998777664

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria

Probab=91.37  E-value=0.21  Score=42.08  Aligned_cols=64  Identities=22%  Similarity=0.211  Sum_probs=35.3

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC----CCCeEEEEcc-----------CCH---hHHHHHHHHhC--CCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH----DVPYDSHDVL-----------KDE---SIRNGIKEYTS--WPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~----gV~~~e~DI~-----------~d~---~~~~eL~~~~g--~~tvPqvFI  103 (205)
                      |.|||.     .+|.-|=-|-++|.++    +|=.-...|+           ..+   ..+....+..|  ....||++|
T Consensus         2 VELFTS-----QGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vV   76 (202)
T PF06764_consen    2 VELFTS-----QGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVV   76 (202)
T ss_dssp             EEEEE------TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEE
T ss_pred             eeEecC-----CCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEE
Confidence            689999     9999999999998765    3311222221           122   23444444444  345799999


Q ss_pred             CCe-Eeechh
Q psy221          104 NGE-FVGGCD  112 (205)
Q Consensus       104 ~G~-~IGG~d  112 (205)
                      ||+ +..|.+
T Consensus        77 nG~~~~~g~~   86 (202)
T PF06764_consen   77 NGREHRVGSD   86 (202)
T ss_dssp             TTTEEEETT-
T ss_pred             CCeeeeeccC
Confidence            995 677776

The function of this family is unknown.; PDB: 2AXO_A.

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=91.08  E-value=0.79  Score=34.13  Aligned_cols=68  Identities=10%  Similarity=0.093  Sum_probs=41.5

Q ss_pred             HHHHHHHHHhcCC-cEEEEEeeCCCCCCChHHHHHHH-HHHhCCC------CeE--EEEccCCHhHHHHHHHHhCCCCcc
Q psy221           30 DVQKSIDEMVKKS-KVVVFMKGVPEAPRCGFSNAVVQ-ILRMHDV------PYD--SHDVLKDESIRNGIKEYTSWPTIP   99 (205)
Q Consensus        30 ~~~~~l~~~~~~~-~VvlYsk~~~~~~~Cp~C~~ak~-lL~~~gV------~~~--e~DI~~d~~~~~eL~~~~g~~tvP   99 (205)
                      +.++.+++..+++ .++||..+    ++|++|+...+ +|..-.|      .|.  ..|+.. ++. ..+....+...+|
T Consensus         5 s~~~a~~~Ak~~~K~llv~~~~----~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~-~e~-~~~~~~~~~~~~P   78 (114)
T cd02958           5 SFEDAKQEAKSEKKWLLVYLQS----EDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDS-SEG-QRFLQSYKVDKYP   78 (114)
T ss_pred             CHHHHHHHHHhhCceEEEEEec----CCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCC-ccH-HHHHHHhCccCCC
Confidence            4566666666654 57777766    99999998754 5543322      233  335543 333 4566666778899


Q ss_pred             EEee
Q psy221          100 QVFI  103 (205)
Q Consensus       100 qvFI  103 (205)
                      .+.+
T Consensus        79 ~~~~   82 (114)
T cd02958          79 HIAI   82 (114)
T ss_pred             eEEE
Confidence            8843

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PRK13703 conjugal pilus assembly protein TraF; Provisional

Probab=91.06  E-value=0.98  Score=39.29  Aligned_cols=68  Identities=9%  Similarity=0.181  Sum_probs=48.1

Q ss_pred             HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHH----HhCCCCeEEEEccC--CHhH-----HHHHHHHhCCCCcc
Q psy221           31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL----RMHDVPYDSHDVLK--DESI-----RNGIKEYTSWPTIP   99 (205)
Q Consensus        31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL----~~~gV~~~e~DI~~--d~~~-----~~eL~~~~g~~tvP   99 (205)
                      -.+.++++.+...++.|..     +.||+|.+.--+|    +.+|+++..+.++.  .+++     -....+..|-..+|
T Consensus       134 ~~~~i~~la~~~GL~fFy~-----s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~P  208 (248)
T PRK13703        134 QRQAIAKLAEHYGLMFFYR-----GQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFP  208 (248)
T ss_pred             HHHHHHHHHhcceEEEEEC-----CCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccc
Confidence            3445677778899999999     8999999987777    46788888777764  2221     11223445667899


Q ss_pred             EEee
Q psy221          100 QVFI  103 (205)
Q Consensus       100 qvFI  103 (205)
                      .+|+
T Consensus       209 Al~L  212 (248)
T PRK13703        209 ALML  212 (248)
T ss_pred             eEEE
Confidence            9987

>PTZ00057 glutathione s-transferase; Provisional

Probab=90.83  E-value=1.7  Score=35.72  Aligned_cols=69  Identities=10%  Similarity=0.244  Sum_probs=48.3

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHh-HH--HHHH--HHhCCCCccEEeeCCeEeechhHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES-IR--NGIK--EYTSWPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~-~~--~eL~--~~~g~~tvPqvFI~G~~IGG~del~~  116 (205)
                      +++||.-     +..+.+..++-+|+..||+|+.+.+..+.+ +.  +++.  ..+-...+|.+.+||..+-...-+..
T Consensus         4 ~~~L~y~-----~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~   77 (205)
T PTZ00057          4 EIVLYYF-----DARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVR   77 (205)
T ss_pred             ceEEEec-----CCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHH
Confidence            3778876     556777899999999999999998854322 11  1112  23446689999999987776655554

>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1

Probab=90.60  E-value=0.7  Score=32.90  Aligned_cols=50  Identities=20%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +|.|..     +||++|+.....|++.        .+.+..+|.+.++     +....+-..+|.+++
T Consensus        22 ~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~~~~~~Pt~~~   79 (104)
T cd02995          22 LVEFYA-----PWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND-----VPSEFVVDGFPTILF   79 (104)
T ss_pred             EEEEEC-----CCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh-----hhhhccCCCCCEEEE
Confidence            455666     9999999988877543        2445556665432     222334478898755

PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu

>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress

Probab=90.58  E-value=2  Score=30.29  Aligned_cols=60  Identities=12%  Similarity=0.206  Sum_probs=39.1

Q ss_pred             ChHHHHHHHHHHhCCCCeEEEEccCCH-------hHHHHHHHH-hCCCCccEEeeCCeEeechhHHHH
Q psy221           57 CGFSNAVVQILRMHDVPYDSHDVLKDE-------SIRNGIKEY-TSWPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        57 Cp~C~~ak~lL~~~gV~~~e~DI~~d~-------~~~~eL~~~-~g~~tvPqvFI~G~~IGG~del~~  116 (205)
                      -+.|.+++-+|+..|++|+.+.++..+       ++.....+. .-..++|.+..||..+.-..-+..
T Consensus         9 ~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~   76 (82)
T cd03075           9 RGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILR   76 (82)
T ss_pred             ccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHH
Confidence            456789999999999999988876432       111111111 134589999988876655544444

The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=90.57  E-value=1.3  Score=35.52  Aligned_cols=59  Identities=12%  Similarity=0.293  Sum_probs=38.1

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHH----hCCCCeEEEEccCCHh---------HHHHHHHHh---CCCCccEEee
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILR----MHDVPYDSHDVLKDES---------IRNGIKEYT---SWPTIPQVFI  103 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~----~~gV~~~e~DI~~d~~---------~~~eL~~~~---g~~tvPqvFI  103 (205)
                      ....++.|..     +|||+|++..-.|+    ++++.+.-++++.+..         ..+.+....   +...+|..|+
T Consensus        50 ~~~~lvnFWA-----sWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~L  124 (153)
T TIGR02738        50 DDYALVFFYQ-----STCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFL  124 (153)
T ss_pred             CCCEEEEEEC-----CCChhHHHHHHHHHHHHHHcCCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEE
Confidence            4566777888     99999998887774    4577776667654320         012223333   4568899865

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>KOG3425|consensus

Probab=90.53  E-value=0.63  Score=36.37  Aligned_cols=57  Identities=14%  Similarity=0.197  Sum_probs=38.1

Q ss_pred             CCChHHHHHHHHHhcCCcEEEEEeeCC----CCCCChHHHHHHHHHHh------CCCCeEEEEccCC
Q psy221           26 PYSTDVQKSIDEMVKKSKVVVFMKGVP----EAPRCGFSNAVVQILRM------HDVPYDSHDVLKD   82 (205)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~VvlYsk~~~----~~~~Cp~C~~ak~lL~~------~gV~~~e~DI~~d   82 (205)
                      +.-+++++.+++.-+..+|.+|..+..    +.+|||+|.+|.-++.+      .++.|..++|..-
T Consensus        10 ~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r   76 (128)
T KOG3425|consen   10 PGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR   76 (128)
T ss_pred             chHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence            445667777777766666766555432    34999999999877643      2456777777654

>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like

Probab=90.43  E-value=0.47  Score=36.77  Aligned_cols=73  Identities=11%  Similarity=0.154  Sum_probs=35.5

Q ss_pred             HHHHHHHHhc-CCcEEEEEeeCC---CCCCChHHHHHHHHHH----hC--CCCeEEEEccCCHhHHH---HHHH--HhCC
Q psy221           31 VQKSIDEMVK-KSKVVVFMKGVP---EAPRCGFSNAVVQILR----MH--DVPYDSHDVLKDESIRN---GIKE--YTSW   95 (205)
Q Consensus        31 ~~~~l~~~~~-~~~VvlYsk~~~---~~~~Cp~C~~ak~lL~----~~--gV~~~e~DI~~d~~~~~---eL~~--~~g~   95 (205)
                      ..+.+++... ..++.||..|..   +.+|||+|.+|.-+++    ..  +..+.++.|..-++.++   .++.  ...-
T Consensus         8 ~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l   87 (119)
T PF06110_consen    8 FEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL   87 (119)
T ss_dssp             HHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC--
T ss_pred             HHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee
Confidence            4455555443 357777666554   3399999999996664    32  34455666643222221   2222  1233


Q ss_pred             CCccEEee
Q psy221           96 PTIPQVFI  103 (205)
Q Consensus        96 ~tvPqvFI  103 (205)
                      ..+|.|+-
T Consensus        88 ~~IPTLi~   95 (119)
T PF06110_consen   88 KGIPTLIR   95 (119)
T ss_dssp             -SSSEEEE
T ss_pred             eecceEEE
Confidence            57898864

; PDB: 1V9W_A 1WOU_A.

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=90.17  E-value=1.6  Score=33.21  Aligned_cols=24  Identities=17%  Similarity=0.221  Sum_probs=15.8

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILR   68 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~   68 (205)
                      ...|+|+.-+    +||+.|......|+
T Consensus        17 Gk~vll~F~a----twC~~C~~~~p~l~   40 (132)
T cd02964          17 GKTVGLYFSA----SWCPPCRAFTPKLV   40 (132)
T ss_pred             CCEEEEEEEC----CCCchHHHHHHHHH
Confidence            3445554433    89999998766654

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=89.66  E-value=1.4  Score=37.85  Aligned_cols=70  Identities=19%  Similarity=0.241  Sum_probs=49.4

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCC--CeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEee-c---hhHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV--PYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVG-G---CDIL  114 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV--~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IG-G---~del  114 (205)
                      ...|-||+-     .+|.-|...-+.|++.|.  .++.+|-..-+  ..+++.  +--++|-||+||+.+- +   .+++
T Consensus        10 ~~~VkI~~H-----ktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~--f~~~~~--~V~SvP~Vf~DGel~~~dpVdp~~i   80 (265)
T COG5494          10 EMEVKIFTH-----KTCVSSYMLFEYLENKGLLGKVKIIDAELPP--FLAFEK--GVISVPSVFIDGELVYADPVDPEEI   80 (265)
T ss_pred             heEEEEEEe-----cchHHHHHHHHHHHhcCCCCCceEEEcCCCh--HHHhhc--ceeecceEEEcCeEEEcCCCCHHHH
Confidence            346889988     999999999999999887  35555543332  223332  3457999999999763 3   4666


Q ss_pred             HHHHh
Q psy221          115 LKLHQ  119 (205)
Q Consensus       115 ~~l~e  119 (205)
                      .++.+
T Consensus        81 es~~~   85 (265)
T COG5494          81 ESILS   85 (265)
T ss_pred             HHHHc
Confidence            66655

>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=88.45  E-value=1.3  Score=31.64  Aligned_cols=54  Identities=17%  Similarity=0.151  Sum_probs=36.7

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCC--CccEEee
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWP--TIPQVFI  103 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~--tvPqvFI  103 (205)
                      ..-+++|..     ++|+.|+.++..|++.      .+.|-.+|+++.+.    +.+..|-.  .+|.+.+
T Consensus        13 ~~~~~~f~~-----~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~----~~~~~~i~~~~~P~~~~   74 (103)
T cd02982          13 KPLLVLFYN-----KDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGR----HLEYFGLKEEDLPVIAI   74 (103)
T ss_pred             CCEEEEEEc-----CChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHH----HHHHcCCChhhCCEEEE
Confidence            345566777     8999999999999653      35666777765443    33344544  8999865

Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent

Probab=88.30  E-value=1.8  Score=40.95  Aligned_cols=58  Identities=19%  Similarity=0.201  Sum_probs=36.9

Q ss_pred             CCcE-EEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe--eCC
Q psy221           41 KSKV-VVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF--ING  105 (205)
Q Consensus        41 ~~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF--I~G  105 (205)
                      ...| |.|..     +||++|+.+...|+++       ++.+-.+|++.+..  +......+-..+|.+.  -+|
T Consensus       371 ~k~VLV~FyA-----pWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~~~~~~~~I~~~PTii~Fk~g  438 (463)
T TIGR00424       371 KEAWLVVLYA-----PWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--EFAKQELQLGSFPTILFFPKH  438 (463)
T ss_pred             CCeEEEEEEC-----CCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--HHHHHHcCCCccceEEEEECC
Confidence            3344 44666     9999999998887543       36677788876632  2222334556788774  455

This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.

>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic

Probab=88.11  E-value=2.3  Score=38.52  Aligned_cols=64  Identities=20%  Similarity=0.402  Sum_probs=40.4

Q ss_pred             HHHHhcCCc--EEEEEeeCCCCCCChHHHHHHHHHH-------hCC--CCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           35 IDEMVKKSK--VVVFMKGVPEAPRCGFSNAVVQILR-------MHD--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        35 l~~~~~~~~--VvlYsk~~~~~~~Cp~C~~ak~lL~-------~~g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +.++++.++  +|.|..     +||++|+.....+.       ..+  |.+-.+|.+.++    ++.+..+-..+|.+++
T Consensus        11 ~~~~i~~~~~~~v~f~a-----~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~   81 (462)
T TIGR01130        11 FDDFIKSHEFVLVEFYA-----PWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK----DLAQKYGVSGYPTLKI   81 (462)
T ss_pred             HHHHHhcCCCEEEEEEC-----CCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH----HHHHhCCCccccEEEE
Confidence            444555443  455666     99999998876553       234  667777776664    4444556778898743


Q ss_pred             --CCeE
Q psy221          104 --NGEF  107 (205)
Q Consensus       104 --~G~~  107 (205)
                        +|+.
T Consensus        82 ~~~g~~   87 (462)
T TIGR01130        82 FRNGED   87 (462)
T ss_pred             EeCCcc
Confidence              5653

Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=88.01  E-value=4.4  Score=31.78  Aligned_cols=38  Identities=13%  Similarity=0.102  Sum_probs=21.6

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHh-------CCCCeEEEEccCC
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRM-------HDVPYDSHDVLKD   82 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~-------~gV~~~e~DI~~d   82 (205)
                      ...++|+...    ++|+.|......|.+       .++.+-.++.+.+
T Consensus        61 ~k~~~l~f~a----~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~  105 (173)
T PRK03147         61 GKGVFLNFWG----TWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDET  105 (173)
T ss_pred             CCEEEEEEEC----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCC
Confidence            3445444433    899999986555532       2355555555444

>PRK10542 glutathionine S-transferase; Provisional

Probab=87.67  E-value=2.1  Score=34.49  Aligned_cols=59  Identities=12%  Similarity=0.131  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHhCCCCeEEEEccCCH---hHHHHHHHHhCCCCccEEee-CCeEeechhHHHHH
Q psy221           59 FSNAVVQILRMHDVPYDSHDVLKDE---SIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKL  117 (205)
Q Consensus        59 ~C~~ak~lL~~~gV~~~e~DI~~d~---~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l  117 (205)
                      .+.+++-+|+..||+|+.+.|+...   ...+++.++.-...+|.+.+ ||..|-....|.+.
T Consensus        10 ~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~Y   72 (201)
T PRK10542         10 CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQY   72 (201)
T ss_pred             HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHH
Confidence            4678888999999999988776432   12356777777789999987 56677666666554

>KOG0868|consensus

Probab=86.69  E-value=1.7  Score=36.42  Aligned_cols=69  Identities=16%  Similarity=0.283  Sum_probs=47.2

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--C-HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--D-ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d-~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~  116 (205)
                      +-++|+-= |  +.|.  .+||-.|.-.||+|+.+-|+.  . ...-.++++..-..+||.+.|||..+-..=.+.+
T Consensus         5 KpiLYSYW-r--SSCs--wRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~   76 (217)
T KOG0868|consen    5 KPILYSYW-R--SSCS--WRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIE   76 (217)
T ss_pred             cchhhhhh-c--ccch--HHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHH
Confidence            45565530 0  5565  788888888889888776643  3 4445588888777899999999988754433333

>PLN02309 5'-adenylylsulfate reductase

Probab=86.16  E-value=3.5  Score=38.93  Aligned_cols=53  Identities=17%  Similarity=0.278  Sum_probs=33.9

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEcc-CCHhHHHHHHHHhCCCCccEEee
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVL-KDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~-~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      -+|.|..     +||++|+.+...|+++       +|.+-.+|++ .+.++   ..+..+-..+|.|++
T Consensus       368 vlV~FyA-----pWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~l---a~~~~~I~~~PTil~  428 (457)
T PLN02309        368 WLVVLYA-----PWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEF---AKQELQLGSFPTILL  428 (457)
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHH---HHhhCCCceeeEEEE
Confidence            3455667     9999999988887543       3556677766 33322   222346667888744

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=85.17  E-value=7.1  Score=29.05  Aligned_cols=34  Identities=12%  Similarity=0.133  Sum_probs=22.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC----CCCeEEEEccCC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH----DVPYDSHDVLKD   82 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~----gV~~~e~DI~~d   82 (205)
                      |+.|..     .|||.|......|+++    ++.+-.++++..
T Consensus        29 vv~F~a-----~~C~~C~~~~~~l~~l~~~~~~~vv~v~~~~~   66 (127)
T cd03010          29 LLNVWA-----SWCAPCREEHPVLMALARQGRVPIYGINYKDN   66 (127)
T ss_pred             EEEEEc-----CcCHHHHHHHHHHHHHHHhcCcEEEEEECCCC
Confidence            444555     8999999988887554    355555554433

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>KOG1695|consensus

Probab=84.90  E-value=4.8  Score=34.06  Aligned_cols=62  Identities=10%  Similarity=0.308  Sum_probs=48.5

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +.-..++-+|.+|.-.||+|++..+..... -.+++..+-...+|.+-|||..|.-.-.+.+.
T Consensus        10 ~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~Ry   71 (206)
T KOG1695|consen   10 NIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WEELKDKMPFGQLPVLEVDGKKLVQSRAILRY   71 (206)
T ss_pred             CcchhHHHHHHHHHhcCCCcceeeeccccc-hhhhcccCCCCCCCEEeECCEeeccHHHHHHH
Confidence            456678999999999999999999987764 34555555667899999999988766655554

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=84.86  E-value=7.3  Score=31.14  Aligned_cols=38  Identities=16%  Similarity=0.108  Sum_probs=24.6

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhC---CCCeEEEEccC
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMH---DVPYDSHDVLK   81 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~---gV~~~e~DI~~   81 (205)
                      +...|+||..+    +|||.|.+....|+++   ++.+-.++++.
T Consensus        62 ~gk~vll~F~a----~wC~~C~~~~p~l~~l~~~~~~vi~V~~~~  102 (173)
T TIGR00385        62 QGKPVLLNVWA----SWCPPCRAEHPYLNELAKDGLPIVGVDYKD  102 (173)
T ss_pred             CCCEEEEEEEC----CcCHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence            34455554443    8999999987776544   66666666543

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=84.13  E-value=1.5  Score=32.40  Aligned_cols=23  Identities=13%  Similarity=0.176  Sum_probs=16.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH   70 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~   70 (205)
                      .++.|..     ++|+.|......|..+
T Consensus        23 ~vl~F~~-----~~C~~C~~~~~~l~~~   45 (123)
T cd03011          23 VLVYFWA-----TWCPVCRFTSPTVNQL   45 (123)
T ss_pred             EEEEEEC-----CcChhhhhhChHHHHH
Confidence            3444555     8999999987777644

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space

Probab=84.12  E-value=7.3  Score=27.27  Aligned_cols=55  Identities=15%  Similarity=0.190  Sum_probs=42.6

Q ss_pred             CChHHHHHHHHHHhCCCC---eEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHH
Q psy221           56 RCGFSNAVVQILRMHDVP---YDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLH  118 (205)
Q Consensus        56 ~Cp~C~~ak~lL~~~gV~---~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~  118 (205)
                      --|.|-++..+|+-.+.+   ++.+.... +.       ++-...+|.+.. +++.+.|++++.+..
T Consensus        13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n-~~-------~Sptg~LP~L~~~~~~~vsg~~~Iv~yL   71 (72)
T PF10568_consen   13 IDPECLAVIAYLKFAGAPEQQFKVVPSNN-PW-------LSPTGELPALIDSGGTWVSGFRNIVEYL   71 (72)
T ss_pred             cCHHHHHHHHHHHhCCCCCceEEEEEcCC-CC-------cCCCCCCCEEEECCCcEEECHHHHHHhh
Confidence            478999999999999998   66665432 21       233457999999 999999999988753

In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane

>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus

Probab=84.09  E-value=2.1  Score=33.63  Aligned_cols=34  Identities=15%  Similarity=0.241  Sum_probs=25.0

Q ss_pred             HHHHHHHHHhcCC-cEEEEEeeCCCCCCChHHHHHHHHH
Q psy221           30 DVQKSIDEMVKKS-KVVVFMKGVPEAPRCGFSNAVVQIL   67 (205)
Q Consensus        30 ~~~~~l~~~~~~~-~VvlYsk~~~~~~~Cp~C~~ak~lL   67 (205)
                      +.++.+..+.+++ +|+|+..+    +||++|++.++..
T Consensus        11 ~~eeal~~Ak~~~Kpvmv~f~s----dwC~~Ck~l~k~~   45 (130)
T cd02960          11 TYEEGLYKAKKSNKPLMVIHHL----EDCPHSQALKKAF   45 (130)
T ss_pred             hHHHHHHHHHHCCCeEEEEEeC----CcCHhHHHHHHHh
Confidence            5677777777654 56665544    9999999998864

They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=84.01  E-value=6.6  Score=32.08  Aligned_cols=62  Identities=16%  Similarity=0.242  Sum_probs=34.4

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHH----HhCCCCeEEEEccCCHhHHHHHHH----------------HhCCCCccE
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQIL----RMHDVPYDSHDVLKDESIRNGIKE----------------YTSWPTIPQ  100 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL----~~~gV~~~e~DI~~d~~~~~eL~~----------------~~g~~tvPq  100 (205)
                      ++++| |..     +|||.|++....+    ++.++.+.-+..+..++.++.+++                ..+...+|.
T Consensus        75 k~vvl~F~a-----twCp~C~~~lp~l~~~~~~~~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~  149 (189)
T TIGR02661        75 RPTLLMFTA-----PSCPVCDKLFPIIKSIARAEETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY  149 (189)
T ss_pred             CEEEEEEEC-----CCChhHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence            44555 554     8999999865555    444666555543333333333322                224456898


Q ss_pred             Eee---CCeEe
Q psy221          101 VFI---NGEFV  108 (205)
Q Consensus       101 vFI---~G~~I  108 (205)
                      .|+   +|+.+
T Consensus       150 ~~lID~~G~I~  160 (189)
T TIGR02661       150 GVLLDQDGKIR  160 (189)
T ss_pred             EEEECCCCeEE
Confidence            766   46543

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti

Probab=81.30  E-value=1.9  Score=32.69  Aligned_cols=57  Identities=14%  Similarity=0.141  Sum_probs=35.4

Q ss_pred             HHHHHHHHhCCCCeEEEEcc-CCHhHHHHHHH------HhCCCCccEEeeCCeEeechhHHHHH
Q psy221           61 NAVVQILRMHDVPYDSHDVL-KDESIRNGIKE------YTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        61 ~~ak~lL~~~gV~~~e~DI~-~d~~~~~eL~~------~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      ..+.+++.++|++.+.++-. .++++.+.++.      ..|-..+|.++|+|+.+-|+.+...|
T Consensus        86 ~~l~~~a~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~gtPt~~v~g~~~~G~~~~~~l  149 (154)
T cd03023          86 ESLLRIAKKAGLDEAKLKKDMDDPEIEATIDKNRQLARALGITGTPAFIIGDTVIPGAVPADTL  149 (154)
T ss_pred             HHHHHHHHHcCCCHHHHHHHhhChHHHHHHHHHHHHHHHcCCCcCCeEEECCEEecCCCCHHHH
Confidence            35666777777765433211 22333333332      23677899999999999988765544

It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.

>COG5429 Uncharacterized secreted protein [Function unknown]

Probab=80.92  E-value=2.6  Score=36.57  Aligned_cols=66  Identities=23%  Similarity=0.242  Sum_probs=40.6

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCC---------eEEEEcc--CC-------HhHHHHHHHHhCCC--CccEE
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVP---------YDSHDVL--KD-------ESIRNGIKEYTSWP--TIPQV  101 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~---------~~e~DI~--~d-------~~~~~eL~~~~g~~--tvPqv  101 (205)
                      .-|.||+.     .+|.-|-.+-+.|.++--+         +++.|-.  .|       .+.+..+....|..  ..||+
T Consensus        43 ~VVELfTS-----QGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQa  117 (261)
T COG5429          43 GVVELFTS-----QGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQA  117 (261)
T ss_pred             eEEEEeec-----CCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchh
Confidence            34678988     8999998999999876432         2233321  12       23333444444543  56999


Q ss_pred             eeCCe-Eeechh
Q psy221          102 FINGE-FVGGCD  112 (205)
Q Consensus       102 FI~G~-~IGG~d  112 (205)
                      +|+|+ +.-|.|
T Consensus       118 vvnGr~~~~Gad  129 (261)
T COG5429         118 VVNGRVHANGAD  129 (261)
T ss_pred             eeechhhhcCCC
Confidence            99996 455554

>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional

Probab=80.77  E-value=2  Score=37.10  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=23.5

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHh---C-CCCeEEEEc
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRM---H-DVPYDSHDV   79 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~---~-gV~~~e~DI   79 (205)
                      +.|++|+-     +.||||++..+-+..   . +|.+..+.+
T Consensus       119 ~~I~vFtD-----p~CpyC~kl~~~l~~~~~~g~V~v~~ip~  155 (251)
T PRK11657        119 RIVYVFAD-----PNCPYCKQFWQQARPWVDSGKVQLRHILV  155 (251)
T ss_pred             eEEEEEEC-----CCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence            35788998     999999999777653   2 366555543

>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]

Probab=80.30  E-value=5.7  Score=27.14  Aligned_cols=50  Identities=20%  Similarity=0.304  Sum_probs=31.5

Q ss_pred             CCChHHHHHHHHHHhC------CCCeEEEEcc-CCHhHHHHHHHHhCCCCccEEe--eCCe
Q psy221           55 PRCGFSNAVVQILRMH------DVPYDSHDVL-KDESIRNGIKEYTSWPTIPQVF--INGE  106 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~------gV~~~e~DI~-~d~~~~~eL~~~~g~~tvPqvF--I~G~  106 (205)
                      ++|++|......|...      .+.+..+|+. .++...+.+..  ....+|.+.  .++.
T Consensus        42 ~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~~~p~~~~~~~~~  100 (127)
T COG0526          42 PWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGV--AVRSIPTLLLFKDGK  100 (127)
T ss_pred             CcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhh--hhccCCeEEEEeCcc
Confidence            8999999998888543      3667788876 55555555542  122346554  4543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	205
2wul_A	118	Crystal Structure Of The Human Glutaredoxin 5 With		5e-28
2lku_A	109	Solution Structure Of Reduced Poplar Apo Grxs14 Len		1e-22
3ipz_A	109	Crystal Structure Of Arabidopsis Monothiol Glutared		7e-22
3gx8_A	121	Structural And Biochemical Characterization Of Yeas		4e-20
3zyw_A	111	Crystal Structure Of The First Glutaredoxin Domain		1e-18
2yan_A	105	Crystal Structure Of The Second Glutaredoxin Domain		4e-17
1wik_A	109	Solution Structure Of The Picot Homology 2 Domain O		1e-15
1yka_A	115	Solution Structure Of Grx4, A Monothiol Glutaredoxi		1e-14
2wci_A	135	Structure Of E. Coli Monothiol Glutaredoxin Grx4 Ho		1e-14
2e7p_A	116	Crystal Structure Of The Holo Form Of Glutaredoxin		1e-06
1z7p_A	117	Solution Structure Of Reduced Glutaredoxin C1 From		1e-06
1jhb_A	106	Human Glutaredoxin In Fully Reduced Form, Nmr, 20 S		1e-04
3fz9_A	112	Crystal Structure Of Poplar Glutaredoxin S12 In Com		4e-04
2khp_A	92	Solution Structure Of Glutaredoxin From Brucella Me		8e-04

>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound Glutathione In An Fes Cluster Length = 118

Iteration: 1
 Score =  120 bits (301), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 53/79 (67%), Positives = 70/79 (88%), Gaps = 1/79 (1%)
Query: 52  PEAPRCGFSNAVVQILRMHDV-PYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG 110
           PE P+CGFSNAVVQILR+H V  Y +++VL D  +R GIK+Y++WPTIPQV++NGEFVGG
Sbjct: 30  PEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 89
Query: 111 CDILLKLHQSGELVEQLEK 129
           CDILL++HQ+G+LVE+L+K
Sbjct: 90  CDILLQMHQNGDLVEELKK 108

>pdb|2LKU|A Chain A, Solution Structure Of Reduced Poplar Apo Grxs14 Length = 109

Iteration: 1
 Score =  102 bits (255), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 62/76 (81%)
Query: 55  PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDIL 114
           P+CGFS  VVQIL+  + P++S ++L++E +R G+KEY+SWPT PQ++I+GEF GGCDI 
Sbjct: 31  PQCGFSQTVVQILKSLNAPFESVNILENELLRQGLKEYSSWPTFPQLYIDGEFFGGCDIT 90
Query: 115 LKLHQSGELVEQLEKG 130
           ++ ++SGEL EQ+EK 
Sbjct: 91  VEAYKSGELQEQVEKA 106

>pdb|3IPZ|A Chain A, Crystal Structure Of Arabidopsis Monothiol Glutaredoxin Atgr Length = 109

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 60/76 (78%)
Query: 55  PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDIL 114
           P CGFSN VVQIL+  +VP++  ++L++E +R G+KEY++WPT PQ++I GEF GGCDI 
Sbjct: 31  PMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGGEFFGGCDIT 90
Query: 115 LKLHQSGELVEQLEKG 130
           L+  ++GEL E++EK 
Sbjct: 91  LEAFKTGELQEEVEKA 106

>pdb|3GX8|A Chain A, Structural And Biochemical Characterization Of Yeast Monothiol Glutaredoxin Grx5 Length = 121

Iteration: 1
 Score = 94.4 bits (233), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 41/106 (38%), Positives = 68/106 (64%), Gaps = 3/106 (2%)
Query: 28  STDVQKSIDEMXXXXXXXXXXXXXPEAPRCGFSNAVVQILRMHDV---PYDSHDVLKDES 84
           ST+++K+I++              PE P+CGFS A + +L    V    + +++VL+D  
Sbjct: 2   STEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPE 61
Query: 85  IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKG 130
           +R GIKE++ WPTIPQ+++N EF+GGCD++  + +SGEL + LE+ 
Sbjct: 62  LREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEEA 107

>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of Human Glutaredoxin 3 (Glrx3) Length = 111

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 52/72 (72%)
Query: 52  PEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGC 111
           P+ PRCGFS  +V+IL  H++ + S D+  DE +R G+K Y+SWPT PQ++++GE +GG 
Sbjct: 26  PQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGELIGGL 85
Query: 112 DILLKLHQSGEL 123
           DI+ +L  S EL
Sbjct: 86  DIIKELEASEEL 97

>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of Human Txnl2 Length = 105

Iteration: 1
 Score = 84.3 bits (207), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 32/69 (46%), Positives = 52/69 (75%)
Query: 56  RCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILL 115
           +CGFS  +++IL    V Y++ D+L+DE +R G+K Y++WPT PQ+++ GE VGG DI+ 
Sbjct: 31  KCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGELVGGLDIVK 90
Query: 116 KLHQSGELV 124
           +L ++GEL+
Sbjct: 91  ELKENGELL 99

>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The Mouse Pkc-Interacting Cousin Of Thioredoxin Protein Length = 109

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 51/69 (73%)
Query: 56  RCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILL 115
           +CGFS  +++IL    V Y++ D+L+DE +R G+K +++WPT PQ+++ G+ VGG DI+ 
Sbjct: 29  KCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGLDIVK 88
Query: 116 KLHQSGELV 124
           +L  +GEL+
Sbjct: 89  ELKDNGELL 97

>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From E. Coli Length = 115

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 52  PEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGC 111
           P+ P CGFS   VQ L      +   D+L++  IR  + +Y +WPT PQ++++GE VGGC
Sbjct: 25  PKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGC 84
Query: 112 DILLKLHQSGELVEQLEKGDQKRK 135
           DI+++++Q GEL + +++   K K
Sbjct: 85  DIVIEMYQRGELQQLIKETAAKYK 108

>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer Length = 135

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 54/84 (64%)
Query: 52  PEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGC 111
           P+ P CGFS   VQ L      +   D+L++  IR  + +Y +WPT PQ++++GE VGGC
Sbjct: 45  PKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGC 104
Query: 112 DILLKLHQSGELVEQLEKGDQKRK 135
           DI+++++Q GEL + +++   K K
Sbjct: 105 DIVIEMYQRGELQQLIKETAAKYK 128

>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From Populus Tremula X Tremuloides Length = 116

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 57  CGFSNAVVQILRMHDVPYD--SHDVLKDES-IRNGIKEYTSWPTIPQVFINGEFVGGCDI 113
           CG+ N V Q+L      Y     D L D S +++ +  +T   T+P VFI G+ +GGCD 
Sbjct: 30  CGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDT 89
Query: 114 LLKLHQSGELVEQLE 128
           +++ HQ  EL+  L+
Sbjct: 90  VVEKHQRNELLPLLQ 104

>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus Tremula X Tremuloides Length = 117

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 57  CGFSNAVVQILRMHDVPYD--SHDVLKDES-IRNGIKEYTSWPTIPQVFINGEFVGGCDI 113
           CG+ N V Q+L      Y     D L D S +++ +  +T   T+P VFI G+ +GGCD 
Sbjct: 31  CGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGGKQIGGCDT 90
Query: 114 LLKLHQSGELVEQLE 128
           +++ HQ  EL+  L+
Sbjct: 91  VVEKHQRNELLPLLQ 105

>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20 Structures Length = 106

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 52  PEAPRCGFSNAVVQ-------ILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN 104
           P  P C  +  ++        +L   D+   +H       I++ +++ T   T+P+VFI 
Sbjct: 21  PTCPYCRRAQEILSQLPIKQGLLEFVDITATNHT----NEIQDYLQQLTGARTVPRVFIG 76
Query: 105 GEFVGGCDILLKLHQSGELVEQLEK 129
            + +GGC  L+ L QSGEL+ +L++
Sbjct: 77  KDCIGGCSDLVSLQQSGELLTRLKQ 101

>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex With Glutathione Length = 112

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query: 57  CGFSNAVVQILRMHDVPYDSHDVLKDE------SIRNGIKEYTSWPTIPQVFINGEFVGG 110
           C +S+ V  + +  +V  D   V  DE       I+  ++  T   T+P VFI G+ +GG
Sbjct: 28  CSYSSEVKSLFKRLNV--DPLVVELDELGAQGPQIQKVLERLTGQHTVPNVFIGGKHIGG 85
Query: 111 CDILLKLHQSGELVEQLEKGDQKRKQ 136
           C   +KL++ GEL   L + + K+ Q
Sbjct: 86  CTDTVKLYRKGELEPLLSEANAKKSQ 111

>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella Melitensis Length = 92

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 55  PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDIL 114
           P C +      +L      ++  D      +R  ++E +   T PQ+FI    VGGCD L
Sbjct: 14  PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDL 73
Query: 115 LKLHQSGELVEQLEKG 130
             L   G+L   L+ G
Sbjct: 74  YALEDEGKLDSLLKTG 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	205
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	5e-57
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	7e-57
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	9e-57
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	1e-55
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	1e-55
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	5e-54
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	4e-53
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	1e-35
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	2e-27
1kte_A	105	Thioltransferase; redox-active center, electron tr	6e-26
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	9e-26
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	6e-22
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	8e-22
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	2e-21
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	3e-21
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	3e-21
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	3e-19
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	3e-19
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	5e-19
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	3e-18
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	7e-18
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	4e-16
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	6e-13
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	4e-11
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	6e-11
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	3e-10
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	2e-09
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	2e-09
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	5e-09
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	2e-08
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	4e-08
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	8e-07
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	6e-06
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	4e-05

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1 Length = 109

 Score =  174 bits (444), Expect = 5e-57
 Identities = 37/101 (36%), Positives = 66/101 (65%)

Query: 29  TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG 88
           +     +  +  K+ V++FMKG  +  +CGFS  +++IL    V Y++ D+L+DE +R G
Sbjct: 2   SSGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQG 61

Query: 89  IKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           +K +++WPT PQ+++ G+ VGG DI+ +L  +GEL+  L+ 
Sbjct: 62  LKTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} Length = 109

 Score =  174 bits (443), Expect = 7e-57
 Identities = 49/102 (48%), Positives = 78/102 (76%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN 87
           +  ++ +++++V   KVV+FMKG  + P CGFSN VVQIL+  +VP++  ++L++E +R 
Sbjct: 4   TPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQ 63

Query: 88  GIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           G+KEY++WPT PQ++I GEF GGCDI L+  ++GEL E++EK
Sbjct: 64  GLKEYSNWPTFPQLYIGGEFFGGCDITLEAFKTGELQEEVEK 105

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens} Length = 105

 Score =  173 bits (442), Expect = 9e-57
 Identities = 39/102 (38%), Positives = 69/102 (67%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN 87
           +  +++ +  +  K+ V++FMKG  +  +CGFS  +++IL    V Y++ D+L+DE +R 
Sbjct: 3   APKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQ 62

Query: 88  GIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           G+K Y++WPT PQ+++ GE VGG DI+ +L ++GEL+  L  
Sbjct: 63  GLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILRG 104

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens} Length = 111

 Score =  170 bits (434), Expect = 1e-55
 Identities = 41/108 (37%), Positives = 66/108 (61%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN 87
             D+   + ++   +  ++FMKG P+ PRCGFS  +V+IL  H++ + S D+  DE +R 
Sbjct: 2   KEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQ 61

Query: 88  GIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRK 135
           G+K Y+SWPT PQ++++GE +GG DI+ +L  S EL     K  +   
Sbjct: 62  GLKAYSSWPTYPQLYVSGELIGGLDIIKELEASEELDTICPKAAENLY 109

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae} Length = 121

 Score =  167 bits (425), Expect = 5e-54
 Identities = 47/105 (44%), Positives = 78/105 (74%), Gaps = 3/105 (2%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV---PYDSHDVLKDES 84
           ST+++K+I++ ++ + VV+FMKG PE P+CGFS A + +L    V    + +++VL+D  
Sbjct: 2   STEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPE 61

Query: 85  IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           +R GIKE++ WPTIPQ+++N EF+GGCD++  + +SGEL + LE+
Sbjct: 62  LREGIKEFSEWPTIPQLYVNKEFIGGCDVITSMARSGELADLLEE 106

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A Length = 135

 Score =  165 bits (420), Expect = 4e-53
 Identities = 37/108 (34%), Positives = 67/108 (62%)

Query: 29  TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG 88
           +   + I   + ++ ++++MKG P+ P CGFS   VQ L      +   D+L++  IR  
Sbjct: 22  STTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAE 81

Query: 89  IKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQ 136
           + +Y +WPT PQ++++GE VGGCDI+++++Q GEL + +++   K K 
Sbjct: 82  LPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKETAAKYKS 129

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A Length = 116

 Score =  120 bits (304), Expect = 1e-35
 Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 8/103 (7%)

Query: 30  DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK---DESIR 86
              K   E+   + VVVF K       CG+ N V Q+L      Y   ++ +      ++
Sbjct: 8   AALKKAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQ 62

Query: 87  NGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           + +  +T   T+P VFI G+ +GGCD +++ HQ  EL+  L+ 
Sbjct: 63  SALAHWTGRGTVPNVFIGGKQIGGCDTVVEKHQRNELLPLLQD 105

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} Length = 114

 Score = 99.6 bits (249), Expect = 2e-27
 Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 11/116 (9%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH--DVLKDES- 84
             ++++ +  ++++S+VV+F K       C  S  V ++     V  +    D + D + 
Sbjct: 3   REELRRHLVGLIERSRVVIFSK-----SYCPHSTRVKELFSSLGVECNVLELDQVDDGAR 57

Query: 85  IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKG---DQKRKQF 137
           ++  + E T+  T+P +F+N   VGGCD   + +QSG L + L++    D +   F
Sbjct: 58  VQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQEDLAYDAENLYF 113

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A* Length = 105

 Score = 95.3 bits (238), Expect = 6e-26
 Identities = 29/104 (27%), Positives = 51/104 (49%), Gaps = 11/104 (10%)

Query: 32  QKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDS-----HDVLKDES-I 85
           Q  ++  ++  KVVVF+K     P C F     ++L                   D + I
Sbjct: 2   QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEI 56

Query: 86  RNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           ++ +++ T   T+P+VFI  E +GGC  L  +H+ GEL+ +L++
Sbjct: 57  QDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQ 100

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A* Length = 118

 Score = 95.5 bits (238), Expect = 9e-26
 Identities = 29/109 (26%), Positives = 52/109 (47%), Gaps = 12/109 (11%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL-RMHDVPYDSHDVLK----- 81
           S +  K + +++ ++++ V  K       C + +A +  L     VP     VL+     
Sbjct: 11  SQETIKHVKDLIAENEIFVASK-----TYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMK 65

Query: 82  -DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
               I+  + E     T+P ++ING+ +GG D L +L ++GEL E LE 
Sbjct: 66  EGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEP 114

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae} Length = 127

 Score = 85.5 bits (212), Expect = 6e-22
 Identities = 28/122 (22%), Positives = 51/122 (41%), Gaps = 11/122 (9%)

Query: 30  DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILR---MHDVPYDSHDVLKDE--- 83
           +VQK    ++  S +++F K       C +S  + ++L         Y   ++ K     
Sbjct: 2   NVQKEYSLILDLSPIIIFSK-----STCSYSKGMKELLENEYQFIPNYYIIELDKHGHGE 56

Query: 84  SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYI 143
            ++  IK  T   T+P + +NG   GG + + KLH  G+L+E L+     +         
Sbjct: 57  ELQEYIKLVTGRGTVPNLLVNGVSRGGNEEIKKLHTQGKLLESLQVWSDGKFSVEQREKP 116

Query: 144 SG 145
           S 
Sbjct: 117 SN 118

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A* Length = 113

 Score = 85.0 bits (211), Expect = 8e-22
 Identities = 25/115 (21%), Positives = 55/115 (47%), Gaps = 9/115 (7%)

Query: 26  PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES- 84
            + + +++SI + V ++ VV++ K       C +   V  + +   V     ++ +    
Sbjct: 3   SFGSRMEESIRKTVTENTVVIYSK-----TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQ 57

Query: 85  ---IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQ 136
              ++  ++  T   T+P VF+ G+ +GGC   +KL++ G+L   L + + K  Q
Sbjct: 58  GPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANGKNGQ 112

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 130

 Score = 84.3 bits (209), Expect = 2e-21
 Identities = 29/116 (25%), Positives = 55/116 (47%), Gaps = 11/116 (9%)

Query: 28  STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH--DVLKD-ES 84
           +T     I E +  + VV+F K       C +     ++    +V Y     D+L+    
Sbjct: 13  ATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQ 67

Query: 85  IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK---GDQKRKQF 137
            ++ + + T   T+P++F+NG F+GG     +LH+ G+L+  + +      KRK+F
Sbjct: 68  FQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSKRKEF 123

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A* Length = 129

 Score = 84.0 bits (208), Expect = 3e-21
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 12/112 (10%)

Query: 25  TPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL-RMHDVPYDSH-----D 78
              S +    + +++ + +V V  K       C +  A +  L +  +VP         D
Sbjct: 20  HMVSQETVAHVKDLIGQKEVFVAAK-----TYCPYCKATLSTLFQELNVPKSKALVLELD 74

Query: 79  VLKDES-IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
            + + S I++ ++E +   T+P V+ING+ +GG   L  L ++G+L E L+ 
Sbjct: 75  EMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILKP 126

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A* Length = 146

 Score = 84.4 bits (209), Expect = 3e-21
 Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 8/118 (6%)

Query: 22  AWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSH--DV 79
           +     +T     I E +  + VV+F K       C +     ++    +V Y     D+
Sbjct: 29  SSLENLATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDL 83

Query: 80  LKD-ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQKRKQ 136
           L+     ++ + + T   T+P++F+NG F+GG     +LH+ G+L+  + +   K+ +
Sbjct: 84  LEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLKKSK 141

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A* Length = 82

 Score = 77.2 bits (191), Expect = 3e-19
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 42  SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101
           + V ++ K       C + +    +L    V +    +  + + R  + + +   T+PQ+
Sbjct: 1   ANVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQI 55

Query: 102 FINGEFVGGCDILLKLHQSGELVEQLE 128
           FI+ + +GG D L  L   G L   L+
Sbjct: 56  FIDAQHIGGYDDLYALDARGGLDPLLK 82

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B Length = 114

 Score = 78.5 bits (194), Expect = 3e-19
 Identities = 19/105 (18%), Positives = 45/105 (42%), Gaps = 11/105 (10%)

Query: 31  VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK------DES 84
            ++ + + +  +KV +F+K       C F    + IL        +++++       +  
Sbjct: 8   AEEFVQQRLANNKVTIFVK-----YTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENE 62

Query: 85  IRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           +R+  ++ T   T+P++F     +GG   LL++     L + L  
Sbjct: 63  LRDYFEQITGGKTVPRIFFGKTSIGGYSDLLEIDNMDALGDILSS 107

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis} Length = 92

 Score = 76.8 bits (190), Expect = 5e-19
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 42  SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101
             V+++ +     P C +      +L      ++  D      +R  ++E +   T PQ+
Sbjct: 6   VDVIIYTR-----PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQI 60

Query: 102 FINGEFVGGCDILLKLHQSGELVEQLEKG 130
           FI    VGGCD L  L   G+L   L+ G
Sbjct: 61  FIGSVHVGGCDDLYALEDEGKLDSLLKTG 89

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria} Length = 362

 Score = 80.5 bits (198), Expect = 3e-18
 Identities = 30/114 (26%), Positives = 53/114 (46%), Gaps = 12/114 (10%)

Query: 23  WRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-DVPYDSHDVLK 81
                S +  K + +++ ++++ V  K       C +S+A +  L     VP     VL+
Sbjct: 242 GSGMVSQETIKHVKDLIAENEIFVASKTY-----CPYSHAALNTLFEKLKVPRSKVLVLQ 296

Query: 82  ------DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
                    I+  + E     T+P ++ING+ +GG D L +L ++GEL E LE 
Sbjct: 297 LNDMKEGADIQAALYEINGQRTVPNIYINGKHIGGNDDLQELRETGELEELLEP 350

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} Length = 99

 Score = 74.2 bits (183), Expect = 7e-18
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 6/88 (6%)

Query: 42  SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG-IKEYTSWPTIPQ 100
           +K+ ++         C F    + +L+   V +  + +  D   R           ++PQ
Sbjct: 16  AKIEIYTW-----STCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQ 70

Query: 101 VFINGEFVGGCDILLKLHQSGELVEQLE 128
           +FI+ + +GGCD +  L  +G+L   L 
Sbjct: 71  IFIDDQHIGGCDDIYALDGAGKLDPLLH 98

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae} Length = 89

 Score = 69.5 bits (171), Expect = 4e-16
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 42  SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101
            +++++ +     P C +      +L    V Y   D       +  ++      T PQ+
Sbjct: 6   KEIILYTR-----PNCPYCKRARDLLDKKGVKYTDIDA-STSLRQEMVQRANGRNTFPQI 59

Query: 102 FINGEFVGGCDILLKLHQSGELVEQLE 128
           FI    VGGCD L  L   G+L   L+
Sbjct: 60  FIGDYHVGGCDDLYALENKGKLDSLLQ 86

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A Length = 93

 Score = 61.3 bits (149), Expect = 6e-13
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 42  SKVVVF---MKGVPE-APRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP- 96
           S + V+   + G  E   +    + V +IL    + Y   D+ +D ++R+ ++     P 
Sbjct: 2   SGLRVYSTSVTGSREIKSQQ---SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPK 58

Query: 97  -TIPQVFINGEFVGGCDILLKLHQSGELVEQL 127
            T PQ+     + G  ++ ++  +   L E L
Sbjct: 59  ATPPQIVNGNHYCGDYELFVEAVEQDTLQEFL 90

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 20/109 (18%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 26  PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE-- 83
           P +    + + + V  + V++F K       C +   V  +L    + + + ++ +    
Sbjct: 2   PPADGTSQWLRKTVDSAAVILFSKT-----TCPYCKKVKDVLAEAKIKHATIELDQLSNG 56

Query: 84  -SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGD 131
            +I+  +  ++   T+PQ+F+ G+F+G    +LK + + EL   + +  
Sbjct: 57  SAIQKCLASFSKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNESK 105

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 111

 Score = 56.5 bits (136), Expect = 6e-11
 Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 61  NAVVQILRMHDVPYDSHDVLKDESIRNGIKEY--------TSWPTIPQVFINGEFVGGCD 112
             VV+ L  + + ++  D+   E  R  + +            P  PQ+F    + G  D
Sbjct: 28  QDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRYCGDYD 87

Query: 113 ILLKLHQSGELVEQL 127
              +  +S  +   L
Sbjct: 88  SFFESKESNTVFSFL 102

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A Length = 121

 Score = 54.6 bits (131), Expect = 3e-10
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 61  NAVVQILRMHDVPYDSHDVLKDESIRNGIKE--------YTSWPTIPQVFINGEFVGGCD 112
             V+  L  + + ++  D+  +E  R  ++E         T +P  PQ+F   ++ G  D
Sbjct: 20  QDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYRGDYD 79

Query: 113 ILLKLHQSGELVEQL 127
              +  ++  +   L
Sbjct: 80  AFFEARENNAVYAFL 94

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A* Length = 89

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 43  KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-------ESIRNGIKEYTSW 95
           KV ++ +       C +     Q    +++ +D   +          + +    K     
Sbjct: 5   KVKIYTR-----NGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPI 59

Query: 96  PTIPQVFINGEFVGGCDILLKL 117
            T+PQ+FI+ E +GG   L   
Sbjct: 60  STVPQIFIDDEHIGGFTELKAN 81

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A Length = 85

 Score = 51.5 bits (124), Expect = 2e-09
 Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 12/84 (14%)

Query: 43  KVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYT--SW 95
           + V+F +       C +      +         D  Y   D+  +   +  +++      
Sbjct: 2   QTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPV 56

Query: 96  PTIPQVFINGEFVGGCDILLKLHQ 119
            T+PQ+F++ + +GG        +
Sbjct: 57  ETVPQIFVDQQHIGGYTDFAAWVK 80

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1 Length = 81

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 9/84 (10%), Positives = 29/84 (34%), Gaps = 8/84 (9%)

Query: 43  KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102
           ++ ++ +       C   +A  + +      ++  +V +       ++    +  +P V 
Sbjct: 2   RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVI 55

Query: 103 INGEFVGGC--DILLKLHQSGELV 124
                  G   D++ +LH +    
Sbjct: 56  AGDLSWSGFRPDMINRLHPAPHAA 79

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus} Length = 92

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 10/76 (13%)

Query: 42  SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES-----IRNGIKEYTSWP 96
           ++V+++         C      ++ L+   V ++   + K E      +   +   +   
Sbjct: 12  AEVLMYGL-----STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSY 66

Query: 97  TIPQVFINGEFVGGCD 112
           ++P V    + V G +
Sbjct: 67  SVPVVVKGDKHVLGYN 82

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1 Length = 75

 Score = 47.6 bits (114), Expect = 4e-08
 Identities = 15/80 (18%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 43  KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102
            + ++ K     P C    A  + L    + Y++ D+  D+  R+ +     +   P V 
Sbjct: 2   SITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LGYVQAPVVE 55

Query: 103 INGEFVGG--CDILLKLHQS 120
           ++GE   G   + + +L  +
Sbjct: 56  VDGEHWSGFRPERIKQLQAA 75

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A Length = 87

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 52  PEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG----------IKEYTSWPTIPQV 101
               +CG  +   ++L +   P++  +++ ++ + +            ++     T+PQV
Sbjct: 9   SNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQV 68

Query: 102 FI-NGEFVGGCDILLKL 117
           F  +G  +GG D L + 
Sbjct: 69  FAPDGSHIGGFDQLREY 85

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10 Length = 241

 Score = 44.3 bits (105), Expect = 6e-06
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 40  KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIP 99
            +  + +F K     P C F     Q+L    + ++   +  D +I   ++  +   T+P
Sbjct: 168 VQESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDATIV-SVRAVSGRTTVP 221

Query: 100 QVFINGEFVGGCDIL 114
           QVFI G+ +GG D L
Sbjct: 222 QVFIGGKHIGGSDDL 236

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei} Length = 103

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 40  KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDV-----LKDESIRNGIKEYTS 94
            + KV+++         C +     ++L    V +D   V      ++E     ++ +  
Sbjct: 20  DRGKVIMYGL-----STCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNP 74

Query: 95  WPTIPQVFINGE-FVGGCD 112
             + P   IN E  + G  
Sbjct: 75  SVSFPTTIINDEKAIVGFK 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	205
2wul_A	118	Glutaredoxin related protein 5; chromosome 14 open	99.97
3ipz_A	109	Monothiol glutaredoxin-S14, chloroplastic; electro	99.96
3zyw_A	111	Glutaredoxin-3; metal binding protein; 1.84A {Homo	99.96
3gx8_A	121	Monothiol glutaredoxin-5, mitochondrial; TRX fold,	99.95
2wem_A	118	Glutaredoxin-related protein 5; chromosome 14 open	99.95
2wci_A	135	Glutaredoxin-4; redox-active center, iron-sulfur c	99.94
3h8q_A	114	Thioredoxin reductase 3; oxidoreductase, structura	99.94
2yan_A	105	Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {H	99.93
1wik_A	109	Thioredoxin-like protein 2; picot homology 2 domai	99.92
3l4n_A	127	Monothiol glutaredoxin-6; C-terminal domain of GRX	99.92
3rhb_A	113	ATGRXC5, glutaredoxin-C5, chloroplastic; thioredox	99.91
1t1v_A	93	SH3BGRL3, SH3 domain-binding glutamic acid-rich pr	99.89
3qmx_A	99	Glutaredoxin A, glutaredoxin 3; electron transport	99.89
3ctg_A	129	Glutaredoxin-2; reduced form, electron transport,	99.89
2ct6_A	111	SH3 domain-binding glutamic acid-rich-like protein	99.89
3c1r_A	118	Glutaredoxin-1; oxidized form, oxidoreductase, cyt	99.88
1u6t_A	121	SH3 domain-binding glutamic acid-rich-like protein	99.87
2jad_A	362	Yellow fluorescent protein glutaredoxin fusion pro	99.86
1kte_A	105	Thioltransferase; redox-active center, electron tr	99.85
2cq9_A	130	GLRX2 protein, glutaredoxin 2; glutathione-S-trans	99.84
2ht9_A	146	Glutaredoxin-2; thioredoxin fold, iron-sulfur clus	99.84
2hze_A	114	Glutaredoxin-1; thioredoxin fold, arsenic, dimethy	99.83
1aba_A	87	Glutaredoxin; electron transport; HET: MES; 1.45A	99.81
2khp_A	92	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.8
1fov_A	82	Glutaredoxin 3, GRX3; active site disulfide, CIS P	99.79
2lqo_A	92	Putative glutaredoxin RV3198.1/MT3292; TRX fold, o	99.78
2klx_A	89	Glutaredoxin; thioredoxin type domain, ssgcid, ele	99.76
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	99.76
3msz_A	89	Glutaredoxin 1; alpha-beta sandwich, center for st	99.71
2e7p_A	116	Glutaredoxin; thioredoxin fold, poplar, electron t	99.64
3nzn_A	103	Glutaredoxin; structural genomics, PSI2, MCSG, pro	99.59
1ego_A	85	Glutaredoxin; electron transport; NMR {Escherichia	99.59
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.58
3ic4_A	92	Glutaredoxin (GRX-1); structural genomics, PSI, MC	99.57
1h75_A	81	Glutaredoxin-like protein NRDH; electron transport	99.49
1r7h_A	75	NRDH-redoxin; thioredoxin, glutaredoxin, redox pro	99.48
2k8s_A	80	Thioredoxin; dimer, structural genomics, PSI-2, pr	99.24
1wjk_A	100	C330018D20RIK protein; glutaredoxin, thioredoxin f	99.23
2fgx_A	107	Putative thioredoxin; NET3, NESG, GFT-glutaredoxin	99.14
1ttz_A	87	Conserved hypothetical protein; structural genomic	99.14
1z3e_A	132	Regulatory protein SPX; bacterial transcription re	98.83
1rw1_A	114	Conserved hypothetical protein YFFB; thioredoxin f	98.81
2axo_A	270	Hypothetical protein ATU2684; alpha beta protein.,	98.81
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.8
2kok_A	120	Arsenate reductase; brucellosis, zoonotic, oxidore	98.77
3kp9_A	291	Vkorc1/thioredoxin domain protein; warfarin, disul	98.52
3l78_A	120	Regulatory protein SPX; transcription, transcripti	98.45
1s3c_A	141	Arsenate reductase; ARSC, arsenite, oxidoreductase	98.43
3rdw_A	121	Putative arsenate reductase; structural genomics,	98.37
3gkx_A	120	Putative ARSC family related protein; ARSC family	98.36
3kp8_A	106	Vkorc1/thioredoxin domain protein; blood coagulati	98.35
3fz4_A	120	Putative arsenate reductase; APC61768, structural	98.34
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	98.29
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	98.17
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	98.17
3f0i_A	119	Arsenate reductase; structural genomics, IDP01300,	98.15
3ir4_A	218	Glutaredoxin 2; glutathione, IDP00895, structural	97.94
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	97.91
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	97.87
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	97.86
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	97.82
2r4v_A	247	XAP121, chloride intracellular channel protein 2;	97.8
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	97.8
2ahe_A	267	Chloride intracellular channel protein 4; glutathi	97.78
3qav_A	243	RHO-class glutathione S-transferase; cytosol; 2.10	97.76
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	97.73
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	97.73
2cz2_A	223	Maleylacetoacetate isomerase; structural genomics,	97.7
4hoj_A	210	REGF protein; GST, glutathione S-transferase, enzy	97.68
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	97.68
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	97.67
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	97.66
1oyj_A	231	Glutathione S-transferase; herbicide detoxificatio	97.64
3fy7_A	250	Chloride intracellular channel protein 3; GST, glu	97.63
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	97.63
1k0m_A	241	CLIC1, NCC27, chloride intracellular channel prote	97.63
1yy7_A	213	SSPA, stringent starvation protein A; GST fold, tr	97.63
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	97.62
3lyk_A	216	Stringent starvation protein A homolog; structural	97.62
3iv4_A	112	Putative oxidoreductase; APC23140, meticillin-resi	97.61
4g10_A	265	Glutathione S-transferase homolog; thioredoxin fol	97.61
1axd_A	209	Glutathione S-transferase I; transferase, herbicid	97.61
3lyp_A	215	Stringent starvation protein A; structural genomic	97.6
3bby_A	215	Uncharacterized GST-like protein YFCF; NP_416804.1	97.6
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	97.59
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	97.58
1e6b_A	221	Glutathione S-transferase; 1.65A {Arabidopsis thal	97.58
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	97.58
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	97.58
1gwc_A	230	Glutathione S-transferase TSI-1; herbicide detoxif	97.57
4hi7_A	228	GI20122; GST, glutathione S-transferase, enzyme fu	97.57
1zl9_A	207	GST class-sigma, glutathione S-transferase 5; glut	97.56
4iel_A	229	Glutathione S-transferase, N-terminal domain PROT;	97.56
1gnw_A	211	Glutathione S-transferase; herbicide detoxificatio	97.56
3vln_A	241	GSTO-1, glutathione S-transferase omega-1; GST fol	97.55
2on5_A	206	Nagst-2, Na glutathione S-transferase 2; hookworm;	97.54
3lxz_A	229	Glutathione S-transferase family protein; structur	97.54
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	97.53
2ws2_A	204	NU-class GST, glutathione S-transferase; parasite,	97.52
2v6k_A	214	Maleylpyruvate isomerase; glutathione-S-transferas	97.52
2vo4_A	219	2,4-D inducible glutathione S-transferase; herbici	97.52
1pn9_A	209	GST class-delta, glutathione S-transferase 1-6; pr	97.51
1aw9_A	216	Glutathione S-transferase III; herbicide detoxific	97.51
2a2r_A	210	Glutathione S-transferase P; detoxification, nitri	97.51
2on7_A	206	Nagst-1, Na glutathione S-transferase 1; hookworm;	97.51
2imi_A	221	Epsilon-class glutathione S-transferase; HET: GSH;	97.5
1yq1_A	208	Glutathione S-transferase; nematoda, structural ge	97.5
1okt_A	211	Glutathione S-transferase; GST; 1.9A {Plasmodium f	97.49
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	97.49
2cvd_A	198	Glutathione-requiring prostaglandin D synthase; gl	97.48
1tw9_A	206	Glutathione S-transferase 2; 1.71A {Heligmosomoide	97.48
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	97.48
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	97.48
3n5o_A	235	Glutathione transferase; seattle structural genomi	97.47
3ay8_A	216	Glutathione S-transferase; GST fold, GST binding,	97.46
1v2a_A	210	Glutathione transferase GST1-6; glutathione S-tran	97.45
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	97.45
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	97.44
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	97.44
3m3m_A	210	Glutathione S-transferase; PSI-II, structural geno	97.43
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	97.43
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	97.42
3rbt_A	246	Glutathione transferase O1; glutathione S-transfer	97.41
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	97.4
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	97.4
1z9h_A	290	Membrane-associated prostaglandin E synthase-2; me	97.38
2c3n_A	247	Glutathione S-transferase theta 1; glutathione tra	97.38
3q18_A	239	GSTO-2, glutathione S-transferase omega-2; glutath	97.38
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	97.37
3m8n_A	225	Possible glutathione S-transferase; PSI-II, struct	97.37
2hnl_A	225	Glutathione S-transferase 1; prostaglandin synthas	97.36
3ic8_A	310	Uncharacterized GST-like proteinprotein; glutathio	97.35
1r5a_A	218	Glutathione transferase; glutathione S-transferase	97.35
1ljr_A	244	HGST T2-2, glutathione S-transferase; HET: GSH; 3.	97.35
3gyk_A	175	27KDA outer membrane protein; APC61738.2, siliciba	97.33
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	97.32
4dej_A	231	Glutathione S-transferase related protein; transfe	97.32
3f6d_A	219	Adgstd4-4, glutathione transferase GST1-4; HET: GT	97.32
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	97.32
1k0d_A	260	URE2 protein; nitrate assimilation, structural gen	97.31
2gsq_A	202	Squid GST, glutathione S-transferase; squid digest	97.31
4f03_A	253	Glutathione transferase; GST fold; 1.80A {Phaneroc	97.3
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	97.28
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	97.28
3ubk_A	242	Glutathione transferase; GSH binding; 1.95A {Lepto	97.27
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	97.25
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	97.25
2wb9_A	211	Glutathione transferase sigma class; thioredoxin f	97.25
3ibh_A	233	GST-II, saccharomyces cerevisiae GTT2; glutathione	97.25
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	97.24
3m0f_A	213	Uncharacterized protein GST_N; PSI-2, NYSGXRC, glu	97.24
3ein_A	209	GST class-theta, glutathione S-transferase 1-1; de	97.23
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	97.19
4hz2_A	230	Glutathione S-transferase domain; glutathione,enzy	97.19
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	97.19
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	97.18
3niv_A	222	Glutathione S-transferase; structural genomics, PS	97.18
4glt_A	225	Glutathione S-transferase-like protein; structural	97.17
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	97.17
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	97.17
3vk9_A	216	Glutathione S-transferase delta; glutathione bindi	97.17
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	97.16
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	97.14
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	97.13
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	97.13
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	97.12
1wou_A	123	Thioredoxin -related protein, 14 kDa; electron tra	97.12
3r2q_A	202	Uncharacterized GST-like protein YIBF; transferase	97.11
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	97.11
1vf1_A	229	Glutathione S-transferase 3; detoxification; HET:	97.1
1t3b_A	211	Thiol:disulfide interchange protein DSBC; oxidored	97.09
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	97.09
1k3y_A	221	GSTA1-1, glutathione S-transferase A1; S-hexyl glu	97.09
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.09
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	97.06
4exj_A	238	Uncharacterized protein; transferase-like protein,	97.04
1tu7_A	208	Glutathione S-transferase 2; HET: GSH; 1.50A {Onch	97.03
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.02
1eej_A	216	Thiol:disulfide interchange protein; oxidoreductas	97.0
1mek_A	120	Protein disulfide isomerase; electron transport, r	96.96
2l57_A	126	Uncharacterized protein; structural genomics, unkn	96.96
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.96
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	96.94
1m0u_A	249	GST2 gene product; flight muscle protein, sigma, t	96.93
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	96.92
3tou_A	226	Glutathione S-transferase protein; GSH binding sit	96.92
3cbu_A	214	Probable GST-related protein; thioredoxin fold, GS	96.92
4ags_A	471	Thiol-dependent reductase 1; transferase, leishman	96.91
3ik7_A	222	Glutathione S-transferase A4; human GST A4-4, enzy	96.9
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	96.88
3gtu_B	224	Glutathione S-transferase; conjugation, detoxifica	96.87
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	96.86
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	96.85
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	96.84
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	96.84
1b48_A	221	GST, mgsta4-4, protein (glutathione S-transferase)	96.83
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	96.83
1nhy_A	219	EF-1-gamma 1, elongation factor 1-gamma 1; protein	96.82
4ikh_A	244	Glutathione S-transferase; enzyme function initiat	96.82
3evi_A	118	Phosducin-like protein 2; alpha beta, 3-layer(ABA)	96.76
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	96.76
2ycd_A	230	Glutathione S-transferase; SOIL bacteria, herbicid	96.76
2yv7_A	260	CG10997-PA, LD46306P, CLIC; dmclic, chloride ION c	96.74
3gx0_A	215	GST-like protein YFCG; transferase, glutathione, g	96.74
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	96.72
1oe8_A	211	Glutathione S-transferase; schistosomiasis, detoxi	96.69
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	96.65
2yv9_A	291	Chloride intracellular channel EXC-4; chloride ION	96.64
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	96.59
2kuc_A	130	Putative disulphide-isomerase; structural genomics	96.57
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	96.55
4ecj_A	244	Glutathione S-transferase; transferase-like protei	96.55
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	96.55
4id0_A	214	Glutathione S-transferase-like protein YIBF; GST,	96.53
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	96.49
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	96.44
2c4j_A	218	Glutathione S-transferase MU 2; glutathione transf	96.38
2x64_A	207	Glutathione-S-transferase; detoxification enzyme;	96.38
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.36
1gsu_A	219	GST, CGSTM1-1, class-MU glutathione S-transferase;	96.35
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	96.29
2dj0_A	137	Thioredoxin-related transmembrane protein 2; AVLA2	96.25
4hz4_A	217	Glutathione-S-transferase; enzyme function initiat	96.25
2fhe_A	216	GST, glutathione S-transferase; transferase-substr	96.23
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	96.17
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	96.15
3iso_A	218	Putative glutathione transferase; GST; HET: GSH; 1	96.1
3lsz_A	225	Glutathione S-transferase; xenobiotic, biodegradat	96.08
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	96.03
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	96.02
3c8e_A	288	YGHU, glutathione S-transferase homologue; glutath	95.98
1z6m_A	175	Conserved hypothetical protein; structural genomic	95.97
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	95.96
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	94.95
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	95.94
3gv1_A	147	Disulfide interchange protein; neisseria gonorrhoe	95.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	95.85
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	95.83
3uar_A	227	Glutathione S-transferase; GSH binding site; HET:	95.8
1dug_A	234	Chimera of glutathione S-transferase-synthetic lin	95.76
1a0r_P	245	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	95.75
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	95.69
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	95.66
2trc_P	217	Phosducin, MEKA, PP33; transducin, beta-gamma, sig	95.65
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	95.63
1n2a_A	201	Glutathione S-transferase; HET: GTS; 1.90A {Escher	95.59
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	95.49
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	95.47
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	95.47
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	94.45
2pvq_A	201	Glutathione S-transferase; xenobiotics detoxificat	95.45
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	95.43
3h93_A	192	Thiol:disulfide interchange protein DSBA; disulfid	95.41
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	95.37
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	95.3
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	95.27
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	95.27
1pmt_A	203	PMGST, GST B1-1, glutathione transferase; glutathi	95.24
2djj_A	121	PDI, protein disulfide-isomerase; thioredoxin fold	95.23
2dsa_A	203	Glutathione S-transferase; HET: GSH HPX; 2.10A {Bu	95.09
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	95.08
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	94.93
3hd5_A	195	Thiol:disulfide interchange protein DSBA; protein	94.92
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	94.85
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	94.83
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	94.82
3h1n_A	252	Probable glutathione S-transferase; APC84167, bord	94.79
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	94.76
4gf0_A	215	Glutathione S-transferase; GST, enzyme function in	94.68
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	94.64
3ira_A	173	Conserved protein; methanosarcina mazei,structural	94.63
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	94.56
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	94.5
2qsi_A	137	Putative hydrogenase expression/formation protein;	94.49
1f2e_A	201	Glutathione S-transferase; GST complexed with glut	94.33
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	94.26
2rem_A	193	Disulfide oxidoreductase; disulfide oxidoreductase	94.24
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	94.12
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	93.95
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	93.89
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	93.85
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	93.77
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	93.77
1b8x_A	280	Protein (AML-1B); nuclear matrix targeting signal	93.7
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	93.38
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	93.37
3ppu_A	352	Glutathione-S-transferase; GST fold; HET: GSH; 2.3	93.33
4dvc_A	184	Thiol:disulfide interchange protein DSBA; pilus as	93.25
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	93.11
1bg5_A	254	MAB, fusion protein of alpha-Na,K-ATPase with glut	92.99
2b5e_A	504	Protein disulfide-isomerase; 2.40A {Saccharomyces	92.86
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	92.8
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	92.74
2lrt_A	152	Uncharacterized protein; structural genomics, thio	92.73
3ga4_A	178	Dolichyl-diphosphooligosaccharide-protein glycosyl	92.73
3ed3_A	298	Protein disulfide-isomerase MPD1; thioredoxin-like	92.56
2r2j_A	382	Thioredoxin domain-containing protein 4; CRFS moti	92.23
2znm_A	195	Thiol:disulfide interchange protein DSBA; thioredo	92.13
3raz_A	151	Thioredoxin-related protein; structural genomics,	92.12
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	91.99
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	91.98
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	91.21
3ktb_A	106	Arsenical resistance operon trans-acting represso;	91.94
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	91.81
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	91.76
3m1g_A	362	Putative glutathione S-transferase; ECM4-like subf	91.75
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	91.58
3kgk_A	110	Arsenical resistance operon trans-acting represso;	91.57
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	90.92
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	90.32
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	89.91
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	89.9
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	89.6
2fno_A	248	AGR_PAT_752P; thioredoxin fold, GST C-terminal dom	89.29
3f8u_A	481	Protein disulfide-isomerase A3ERP57; endoplasmic r	89.06
2ywm_A	229	Glutaredoxin-like protein; redox protein, structur	88.87
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	88.64
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	88.28
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	87.84
3qcp_A	470	QSOX from trypanosoma brucei (tbqsox); ERV fold, t	87.36
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	87.35
4evm_A	138	Thioredoxin family protein; structural genomics, n	87.13
3us3_A	367	Calsequestrin-1; calcium-binding protein; 1.74A {O	87.08
1xg8_A	111	Hypothetical protein SA0798; structural genomics,	86.53
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	86.41
3uem_A	361	Protein disulfide-isomerase; thioredoxin-like doma	84.86
3trh_A	169	Phosphoribosylaminoimidazole carboxylase carboxylt	84.76
4gci_A	211	Glutathione S-transferase; GST, enzyme function in	84.61
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	83.41
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	83.36
1u11_A	182	PURE (N5-carboxyaminoimidazole ribonucleotide MUT;	81.5
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	81.43
3l4e_A	206	Uncharacterized peptidase LMO0363; hypothetical pr	81.03
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	80.77

>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}

Probab=99.97  E-value=4.9e-30  Score=197.32  Aligned_cols=105  Identities=61%  Similarity=1.114  Sum_probs=99.5

Q ss_pred             HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCC-CeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe
Q psy221           30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDV-PYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV  108 (205)
Q Consensus        30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV-~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I  108 (205)
                      ..++++++++++++||||+||+|..|.||||.+|+++|+.++| +|+++||+.+++++++|++++|++|+|||||||+||
T Consensus         8 ~~~e~i~~~i~~~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~I   87 (118)
T 2wul_A            8 GSAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFV   87 (118)
T ss_dssp             -CHHHHHHHHHHSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEEE
T ss_pred             chHHHHHHHHhcCCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEEE
Confidence            3467899999999999999999999999999999999999999 699999999999999999999999999999999999


Q ss_pred             echhHHHHHHhcccHHHHHhhcCCcc
Q psy221          109 GGCDILLKLHQSGELVEQLEKGDQKR  134 (205)
Q Consensus       109 GG~del~~l~e~GeL~~~L~~~~~~~  134 (205)
                      ||+|++.+|+++|+|.++|++++...
T Consensus        88 GG~Ddl~~l~~~GeL~~lL~~~Gi~~  113 (118)
T 2wul_A           88 GGCDILLQMHQNGDLVEELKKLGIHS  113 (118)
T ss_dssp             ECHHHHHHHHHHTHHHHHHHHTTCCC
T ss_pred             CCHHHHHHHHHCCCHHHHHHHcCCcc
Confidence            99999999999999999999998643

>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A

Probab=99.96  E-value=1.3e-28  Score=185.27  Aligned_cols=106  Identities=46%  Similarity=0.957  Sum_probs=101.4

Q ss_pred             CCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCC
Q psy221           26 PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFING  105 (205)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G  105 (205)
                      ..++++++++++++++++|+||++++|..|+||+|.+|+++|+++||+|+++||+.+++.+++|++++|++++|+|||||
T Consensus         2 ~~s~~~~~~v~~~i~~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g~~tvP~ifi~g   81 (109)
T 3ipz_A            2 ALTPQLKDTLEKLVNSEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSNWPTFPQLYIGG   81 (109)
T ss_dssp             CCCHHHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCSSSCEEEETT
T ss_pred             CCCHHHHHHHHHHHccCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHCCCCCCeEEECC
Confidence            46789999999999999999999988877899999999999999999999999999999999999999999999999999


Q ss_pred             eEeechhHHHHHHhcccHHHHHhhcC
Q psy221          106 EFVGGCDILLKLHQSGELVEQLEKGD  131 (205)
Q Consensus       106 ~~IGG~del~~l~e~GeL~~~L~~~~  131 (205)
                      ++|||+|++.+|+++|+|.++|++++
T Consensus        82 ~~iGG~d~l~~l~~~G~L~~~L~~a~  107 (109)
T 3ipz_A           82 EFFGGCDITLEAFKTGELQEEVEKAM  107 (109)
T ss_dssp             EEEECHHHHHHHHHHSHHHHHHHHHH
T ss_pred             EEEeCHHHHHHHHHcCcHHHHHHHhh
Confidence            99999999999999999999998763

>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}

Probab=99.96  E-value=1.8e-28  Score=185.75  Aligned_cols=105  Identities=39%  Similarity=0.839  Sum_probs=99.7

Q ss_pred             ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE
Q psy221           28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF  107 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~  107 (205)
                      ++++++++++++++++||||++|++..++||+|.+|+++|+++||+|+++||+.+++.+++|++++|++++|+|||||++
T Consensus         2 ~~~~~~~v~~~i~~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~g~~tvP~ifi~g~~   81 (111)
T 3zyw_A            2 KEDLNLRLKKLTHAAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYSSWPTYPQLYVSGEL   81 (111)
T ss_dssp             --CHHHHHHHHHTSSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred             CHHHHHHHHHHHhcCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHHCCCCCCEEEECCEE
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eechhHHHHHHhcccHHHHHhhcCC
Q psy221          108 VGGCDILLKLHQSGELVEQLEKGDQ  132 (205)
Q Consensus       108 IGG~del~~l~e~GeL~~~L~~~~~  132 (205)
                      |||+|++.+|+++|+|.++|++++.
T Consensus        82 iGG~d~l~~l~~~G~L~~~L~~a~~  106 (111)
T 3zyw_A           82 IGGLDIIKELEASEELDTICPKAAE  106 (111)
T ss_dssp             EECHHHHHHHHHTTCHHHHSCCCCC
T ss_pred             EecHHHHHHHHHCCCHHHHHHhCcc
Confidence            9999999999999999999988754

>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.3e-28  Score=186.33  Aligned_cols=106  Identities=44%  Similarity=0.937  Sum_probs=101.6

Q ss_pred             ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCC---eEEEEccCCHhHHHHHHHHhCCCCccEEeeC
Q psy221           28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVP---YDSHDVLKDESIRNGIKEYTSWPTIPQVFIN  104 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~---~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~  104 (205)
                      ++++.++++++++.++|+||+++++..++||+|.+|+++|+++||+   |+++||+.+++.+++|++++|++++||||||
T Consensus         2 ~~~~~~~v~~~i~~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI~   81 (121)
T 3gx8_A            2 STEIRKAIEDAIESAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYVN   81 (121)
T ss_dssp             CHHHHHHHHHHHHSCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEET
T ss_pred             CHHHHHHHHHHhccCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEEC
Confidence            5688999999999999999999888888999999999999999999   9999999999999999999999999999999


Q ss_pred             CeEeechhHHHHHHhcccHHHHHhhcCCc
Q psy221          105 GEFVGGCDILLKLHQSGELVEQLEKGDQK  133 (205)
Q Consensus       105 G~~IGG~del~~l~e~GeL~~~L~~~~~~  133 (205)
                      |++|||+|++.+|+++|+|.++|+.+++.
T Consensus        82 g~~iGG~d~l~~l~~~G~L~~~L~~~g~~  110 (121)
T 3gx8_A           82 KEFIGGCDVITSMARSGELADLLEEAQAL  110 (121)
T ss_dssp             TEEEESHHHHHHHHHHTHHHHHHHHTTCB
T ss_pred             CEEEecHHHHHHHHHcCChHHHHHHcCCC
Confidence            99999999999999999999999998764

>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A

Probab=99.94  E-value=2.1e-26  Score=180.51  Aligned_cols=106  Identities=34%  Similarity=0.752  Sum_probs=101.5

Q ss_pred             ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE
Q psy221           28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF  107 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~  107 (205)
                      .+++.+.+++++++++|+||++|+++.++||+|.+|+++|++++|+|+++||+.+++.+++|++++|++++|+|||||++
T Consensus        21 ~~~~~~~v~~~i~~~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~~tvP~VfI~G~~  100 (135)
T 2wci_A           21 MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGEL  100 (135)
T ss_dssp             CCHHHHHHHHHHHHCSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTEE
T ss_pred             hHHHHHHHHHHhccCCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCCCCcCEEEECCEE
Confidence            55799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eechhHHHHHHhcccHHHHHhhcCCc
Q psy221          108 VGGCDILLKLHQSGELVEQLEKGDQK  133 (205)
Q Consensus       108 IGG~del~~l~e~GeL~~~L~~~~~~  133 (205)
                      |||+|++.+|+++|+|.++|+.++++
T Consensus       101 iGG~d~l~~l~~~G~L~~~L~~~g~~  126 (135)
T 2wci_A          101 VGGCDIVIEMYQRGELQQLIKETAAK  126 (135)
T ss_dssp             EESHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             EEChHHHHHHHHCChHHHHHHHcCCC
Confidence            99999999999999999999987654

>3h8q_A Thioredoxin reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC, developmental protein, differentiation; 2.21A {Homo sapiens} SCOP: c.47.1.0

Probab=99.94  E-value=5.6e-26  Score=171.71  Aligned_cols=108  Identities=23%  Similarity=0.419  Sum_probs=95.5

Q ss_pred             ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC---HhHHHHHHHHhCCCCccEEeeC
Q psy221           28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD---ESIRNGIKEYTSWPTIPQVFIN  104 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d---~~~~~eL~~~~g~~tvPqvFI~  104 (205)
                      +.+..+++++++++++|+||++     ++||+|.+++.+|+++|++|+++||+.+   ++.+++|.+.+|++++|+||||
T Consensus         3 ~~~~~~~~~~~i~~~~v~vy~~-----~~Cp~C~~ak~~L~~~~i~~~~~dvd~~~~~~~~~~~l~~~~g~~tvP~vfi~   77 (114)
T 3h8q_A            3 REELRRHLVGLIERSRVVIFSK-----SYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVN   77 (114)
T ss_dssp             CHHHHHHHHHHHHHCSEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTSTTHHHHHHHHHHHHSCCSSCEEEET
T ss_pred             hHHHHHHHHHHhccCCEEEEEc-----CCCCcHHHHHHHHHHcCCCcEEEEecCCCChHHHHHHHHHHhCCCccCEEEEC
Confidence            4678899999999999999999     9999999999999999999999999863   4667889899999999999999


Q ss_pred             CeEeechhHHHHHHhcccHHHHHhhcCCccccceee
Q psy221          105 GEFVGGCDILLKLHQSGELVEQLEKGDQKRKQFILI  140 (205)
Q Consensus       105 G~~IGG~del~~l~e~GeL~~~L~~~~~~~~~~~~~  140 (205)
                      |++|||+|++.+|+++|+|.++|+.....+||++++
T Consensus        78 g~~igG~d~l~~l~~~G~L~~~l~~~~~~~ydLiv~  113 (114)
T 3h8q_A           78 KVHVGGCDQTFQAYQSGLLQKLLQEDLAYDAENLYF  113 (114)
T ss_dssp             TEEEESHHHHHHHHHHTHHHHHHHSCCCCCC-----
T ss_pred             CEEEeCHHHHHHHHHCCCHHHHhcCcccCCceeEEe
Confidence            999999999999999999999999556678998875

>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}

Probab=99.93  E-value=4.8e-25  Score=163.77  Aligned_cols=103  Identities=38%  Similarity=0.840  Sum_probs=98.2

Q ss_pred             CChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe
Q psy221           27 YSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE  106 (205)
Q Consensus        27 ~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~  106 (205)
                      .++++.+.+++++++++|+||++|+++.+|||+|.+++.+|++++|+|.++||+.+++.+++|.+++|.+++|+|||||+
T Consensus         2 ~~~~~~~~~~~~i~~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~v~i~g~   81 (105)
T 2yan_A            2 MAPKLEERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNWPTYPQLYVKGE   81 (105)
T ss_dssp             CCHHHHHHHHHHHTSSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTCCSSCEEEETTE
T ss_pred             ccHHHHHHHHHHhccCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCCCCCCeEEECCE
Confidence            35788999999999999999999998889999999999999999999999999999999999999999999999999999


Q ss_pred             EeechhHHHHHHhcccHHHHHhh
Q psy221          107 FVGGCDILLKLHQSGELVEQLEK  129 (205)
Q Consensus       107 ~IGG~del~~l~e~GeL~~~L~~  129 (205)
                      +|||+|++.+|+++|+|.++|+.
T Consensus        82 ~igg~d~~~~l~~~g~L~~~l~~  104 (105)
T 2yan_A           82 LVGGLDIVKELKENGELLPILRG  104 (105)
T ss_dssp             EEECHHHHHHHHHTTCHHHHHTT
T ss_pred             EEeChHHHHHHHHCCCHHHHhcc
Confidence            99999999999999999999963

>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.92  E-value=2.1e-25  Score=167.15  Aligned_cols=102  Identities=36%  Similarity=0.802  Sum_probs=96.0

Q ss_pred             HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeec
Q psy221           31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG  110 (205)
Q Consensus        31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG  110 (205)
                      +++.++++++.++|+||+++++..++||+|.+++++|++++|+|+++||+.+++.+++|.+++|++++|+|||||++|||
T Consensus         4 ~~~~~~~~i~~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~~~vP~ifi~g~~igG   83 (109)
T 1wik_A            4 GSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGG   83 (109)
T ss_dssp             SCCCHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEEC
T ss_pred             HHHHHHHHhccCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhCCCCCCEEEECCEEEcC
Confidence            45567889999999999999998799999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhcccHHHHHhhcCC
Q psy221          111 CDILLKLHQSGELVEQLEKGDQ  132 (205)
Q Consensus       111 ~del~~l~e~GeL~~~L~~~~~  132 (205)
                      ++++.+|+++|+|.++|+.+..
T Consensus        84 ~d~l~~l~~~g~L~~~L~~a~~  105 (109)
T 1wik_A           84 LDIVKELKDNGELLPILKGESG  105 (109)
T ss_dssp             HHHHHHHHHHTCSHHHHHTCCS
T ss_pred             HHHHHHHHHCCCHHHHHhcccC
Confidence            9999999999999999987643

>3l4n_A Monothiol glutaredoxin-6; C-terminal domain of GRX6, oxidoreductase; HET: GSH; 1.50A {Saccharomyces cerevisiae}

Probab=99.92  E-value=5.3e-25  Score=170.83  Aligned_cols=98  Identities=29%  Similarity=0.446  Sum_probs=90.8

Q ss_pred             HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC---CCCeEEEEccCC---HhHHHHHHHHhCCCCccEEeeC
Q psy221           31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH---DVPYDSHDVLKD---ESIRNGIKEYTSWPTIPQVFIN  104 (205)
Q Consensus        31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~---gV~~~e~DI~~d---~~~~~eL~~~~g~~tvPqvFI~  104 (205)
                      .++.+++++++++|+||++     ++||+|.+|+++|++.   +++|+++||+.+   ++.+++|++.+|++++||||||
T Consensus         3 p~~~~~~ii~~~~Vvvysk-----~~Cp~C~~ak~lL~~~~~~~v~~~~idid~~~d~~~~~~~l~~~~G~~tVP~IfI~   77 (127)
T 3l4n_A            3 VQKEYSLILDLSPIIIFSK-----STCSYSKGMKELLENEYQFIPNYYIIELDKHGHGEELQEYIKLVTGRGTVPNLLVN   77 (127)
T ss_dssp             HHHHHHHHHTSCSEEEEEC-----TTCHHHHHHHHHHHHHEEEESCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEET
T ss_pred             HHHHHHHHHccCCEEEEEc-----CCCccHHHHHHHHHHhcccCCCcEEEEecCCCCHHHHHHHHHHHcCCCCcceEEEC
Confidence            5667899999999999999     9999999999999985   799999999876   5788889999999999999999


Q ss_pred             CeEeechhHHHHHHhcccHHHHHhhcCCc
Q psy221          105 GEFVGGCDILLKLHQSGELVEQLEKGDQK  133 (205)
Q Consensus       105 G~~IGG~del~~l~e~GeL~~~L~~~~~~  133 (205)
                      |++|||+|++.+|+++|+|.++|+.++..
T Consensus        78 G~~IGG~ddl~~l~~~G~L~~lL~~~g~~  106 (127)
T 3l4n_A           78 GVSRGGNEEIKKLHTQGKLLESLQVWSDG  106 (127)
T ss_dssp             TEECCCHHHHHHHHHTTCHHHHHHHTCTT
T ss_pred             CEEEcCHHHHHHHHHCCCHHHHHHHhcCC
Confidence            99999999999999999999999988764

>3rhb_A ATGRXC5, glutaredoxin-C5, chloroplastic; thioredoxin fold, thiol-disulfide oxidoreductase, glutaredox oxidoreductase; HET: GSH; 1.20A {Arabidopsis thaliana} PDB: 3rhc_A* 3fz9_A* 3fza_A*

Probab=99.91  E-value=5.5e-24  Score=159.39  Aligned_cols=101  Identities=24%  Similarity=0.458  Sum_probs=91.4

Q ss_pred             ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC----HhHHHHHHHHhCCCCccEEee
Q psy221           28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD----ESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d----~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +.++++.++++++.++|++|++     ++||+|.+++.+|++++++|+++||+.+    ++.+++|.+.+|.+++|+|||
T Consensus         5 ~~~~~~~~~~~i~~~~v~vy~~-----~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~~~~~l~~~~g~~tvP~ifi   79 (113)
T 3rhb_A            5 GSRMEESIRKTVTENTVVIYSK-----TWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFV   79 (113)
T ss_dssp             -CHHHHHHHHHHHHSSEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEEEC-----CCChhHHHHHHHHHHcCCCCeEEEeecCCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            4578899999999999999999     9999999999999999999999999874    677888999999999999999


Q ss_pred             CCeEeechhHHHHHHhcccHHHHHhhcCCc
Q psy221          104 NGEFVGGCDILLKLHQSGELVEQLEKGDQK  133 (205)
Q Consensus       104 ~G~~IGG~del~~l~e~GeL~~~L~~~~~~  133 (205)
                      ||++|||++++.+++++|+|.++|+.++..
T Consensus        80 ~g~~igG~~~~~~~~~~g~L~~~l~~~~~~  109 (113)
T 3rhb_A           80 CGKHIGGCTDTVKLNRKGDLELMLAEANGK  109 (113)
T ss_dssp             TTEEEESHHHHHHHHHHTHHHHHHTC----
T ss_pred             CCEEEcCcHHHHHHHHcCCHHHHHHHHhhh
Confidence            999999999999999999999999887653

>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK; glutaredoxin, thioredoxin fold, protein 3D-structure, X-RAY crystallography; 1.60A {Mus musculus} SCOP: c.47.1.14 PDB: 1j0f_A 1sj6_A

Probab=99.89  E-value=3.3e-23  Score=150.81  Aligned_cols=83  Identities=20%  Similarity=0.374  Sum_probs=79.4

Q ss_pred             CCcEEEEEeeCCCCCCChHH------HHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC--CCCccEEeeCCeEeechh
Q psy221           41 KSKVVVFMKGVPEAPRCGFS------NAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS--WPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C------~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g--~~tvPqvFI~G~~IGG~d  112 (205)
                      +.+|+||++     ++||+|      .+|+++|+++||+|+++||+.+++.+++|++.+|  ..++|+|||||++|||+|
T Consensus         1 M~~v~ly~~-----~~C~~c~~~~~~~~ak~~L~~~~i~~~~~di~~~~~~~~~l~~~~g~~~~~vP~ifi~g~~igG~d   75 (93)
T 1t1v_A            1 MSGLRVYST-----SVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYE   75 (93)
T ss_dssp             CCCEEEEEC-----SSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHH
T ss_pred             CCCEEEEEc-----CCCCCchhhHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCCCCCCCCEEEECCEEEeCHH
Confidence            358999999     999999      9999999999999999999999999999999999  669999999999999999


Q ss_pred             HHHHHHhcccHHHHHh
Q psy221          113 ILLKLHQSGELVEQLE  128 (205)
Q Consensus       113 el~~l~e~GeL~~~L~  128 (205)
                      ++.+|+++|+|.++|+
T Consensus        76 ~l~~l~~~g~L~~~l~   91 (93)
T 1t1v_A           76 LFVEAVEQDTLQEFLK   91 (93)
T ss_dssp             HHHHHHHTTCHHHHTT
T ss_pred             HHHHHHhcCCHHHHhC
Confidence            9999999999999985

>3qmx_A Glutaredoxin A, glutaredoxin 3; electron transport; 1.82A {Synechocystis SP} SCOP: c.47.1.0

Probab=99.89  E-value=9.8e-23  Score=150.91  Aligned_cols=84  Identities=23%  Similarity=0.484  Sum_probs=81.1

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh-CCCCccEEeeCCeEeechhHHHHHH
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT-SWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~-g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ..++|+||++     ++||+|.+|+++|++++|+|+++||+.+++.+++|++++ |..++|+|||||++|||++++.+++
T Consensus        14 ~~~~v~vy~~-----~~Cp~C~~ak~~L~~~~i~y~~idI~~~~~~~~~l~~~~~g~~~vP~ifi~g~~igG~d~l~~~~   88 (99)
T 3qmx_A           14 VSAKIEIYTW-----STCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQHIGGCDDIYALD   88 (99)
T ss_dssp             CCCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECTTCHHHHHHHHHHTTTCCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCCCEEEEEc-----CCChhHHHHHHHHHHCCCCCEEEEcCCCHHHHHHHHHHhCCCCCCCEEEECCEEEeChHHHHHHH
Confidence            4679999999     999999999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             hcccHHHHHh
Q psy221          119 QSGELVEQLE  128 (205)
Q Consensus       119 e~GeL~~~L~  128 (205)
                      ++|+|.++|+
T Consensus        89 ~~g~L~~~L~   98 (99)
T 3qmx_A           89 GAGKLDPLLH   98 (99)
T ss_dssp             HTTCHHHHHT
T ss_pred             HcCCHHHHhc
Confidence            9999999996

>3ctg_A Glutaredoxin-2; reduced form, electron transport, mitochondrion, redox-activ transit peptide, transport, oxidoreductase; 1.50A {Saccharomyces cerevisiae} PDB: 3ctf_A 3d4m_A 3d5j_A*

Probab=99.89  E-value=1.1e-22  Score=157.58  Aligned_cols=101  Identities=22%  Similarity=0.379  Sum_probs=93.2

Q ss_pred             CCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHH-HHHHHhCC---CCeEEEEccCCH---hHHHHHHHHhCCCC
Q psy221           25 TPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAV-VQILRMHD---VPYDSHDVLKDE---SIRNGIKEYTSWPT   97 (205)
Q Consensus        25 ~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~a-k~lL~~~g---V~~~e~DI~~d~---~~~~eL~~~~g~~t   97 (205)
                      ...+.+.++.+++++++++|+||++     ++||+|.++ +.+|++++   ++|+++||+.++   +.+++|.+.+|+++
T Consensus        20 ~~~~~~~~~~v~~~i~~~~Vvvy~~-----~~Cp~C~~a~k~~L~~~~~~~i~~~~vdvd~~~~~~~~~~~L~~~~g~~t   94 (129)
T 3ctg_A           20 HMVSQETVAHVKDLIGQKEVFVAAK-----TYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKT   94 (129)
T ss_dssp             --CCHHHHHHHHHHHHHSSEEEEEC-----TTCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCS
T ss_pred             ccccHHHHHHHHHHHcCCCEEEEEC-----CCCCchHHHHHHHHHhcCccCCCcEEEEccccCCHHHHHHHHHHHhCCCC
Confidence            3447789999999999999999999     999999999 99999999   999999999874   67889999999999


Q ss_pred             ccEEeeCCeEeechhHHHHHHhcccHHHHHhhc
Q psy221           98 IPQVFINGEFVGGCDILLKLHQSGELVEQLEKG  130 (205)
Q Consensus        98 vPqvFI~G~~IGG~del~~l~e~GeL~~~L~~~  130 (205)
                      +|+|||||++|||+|++.+|+++|+|.++|+.+
T Consensus        95 VP~vfi~g~~igG~d~l~~l~~~G~L~~~L~~a  127 (129)
T 3ctg_A           95 VPNVYINGKHIGGNSDLETLKKNGKLAEILKPV  127 (129)
T ss_dssp             SCEEEETTEEEESHHHHHHHHHTTHHHHHTTTT
T ss_pred             CCEEEECCEEEcCHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999754

>2ct6_A SH3 domain-binding glutamic acid-rich-like protein 2; SH3BGRL2,FASH3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=153.53  Aligned_cols=85  Identities=21%  Similarity=0.379  Sum_probs=81.0

Q ss_pred             CcEEEEEeeCCCCCCChHHH------HHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh--------CCCCccEEeeCCeE
Q psy221           42 SKVVVFMKGVPEAPRCGFSN------AVVQILRMHDVPYDSHDVLKDESIRNGIKEYT--------SWPTIPQVFINGEF  107 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~------~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~--------g~~tvPqvFI~G~~  107 (205)
                      .+|+||++     ++||+|.      +|+++|++++|+|+++||+.+++.+++|++++        |++++|||||||++
T Consensus         8 m~V~vy~~-----~~C~~C~~~~~~~~ak~~L~~~gi~y~~vdI~~~~~~~~~l~~~~~~~~~~~~g~~tvP~vfi~g~~   82 (111)
T 2ct6_A            8 MVIRVFIA-----SSSGFVAIKKKQQDVVRFLEANKIEFEEVDITMSEEQRQWMYKNVPPEKKPTQGNPLPPQIFNGDRY   82 (111)
T ss_dssp             CCEEEEEC-----SSCSCHHHHHHHHHHHHHHHHTTCCEEEEETTTCHHHHHHHHHSCCTTTCCSSSSCCSCEEEETTEE
T ss_pred             cEEEEEEc-----CCCCCcccchhHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhcccccccCCCCCCCEEEECCEE
Confidence            57999999     9999999      89999999999999999999999999999985        89999999999999


Q ss_pred             eechhHHHHHHhcccHHHHHhhcC
Q psy221          108 VGGCDILLKLHQSGELVEQLEKGD  131 (205)
Q Consensus       108 IGG~del~~l~e~GeL~~~L~~~~  131 (205)
                      |||+|++.+|+++|+|.++|+.++
T Consensus        83 iGG~d~l~~l~~~g~L~~~L~~~~  106 (111)
T 2ct6_A           83 CGDYDSFFESKESNTVFSFLGLKS  106 (111)
T ss_dssp             EEEHHHHHHHHTTTCHHHHHTCCS
T ss_pred             EeCHHHHHHHHHcCCHHHHHcCCC
Confidence            999999999999999999998654

>3c1r_A Glutaredoxin-1; oxidized form, oxidoreductase, cytoplasm, electron transport, redox-active center, transport; HET: MES; 2.00A {Saccharomyces cerevisiae} PDB: 3c1s_A* 2jac_A*

Probab=99.88  E-value=2.2e-22  Score=153.04  Aligned_cols=102  Identities=24%  Similarity=0.373  Sum_probs=95.2

Q ss_pred             CCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHH-HHHHHhCC---CCeEEEEccCCH---hHHHHHHHHhCCCCc
Q psy221           26 PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAV-VQILRMHD---VPYDSHDVLKDE---SIRNGIKEYTSWPTI   98 (205)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~a-k~lL~~~g---V~~~e~DI~~d~---~~~~eL~~~~g~~tv   98 (205)
                      ..+++..+.+++++++++|++|++     ++||+|.++ +.+|++++   ++|+++||+.++   +.+++|.+.+|.+++
T Consensus         9 ~~~~~~~~~~~~~i~~~~Vvvf~~-----~~Cp~C~~alk~~L~~~~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~tv   83 (118)
T 3c1r_A            9 MVSQETIKHVKDLIAENEIFVASK-----TYCPYCHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTV   83 (118)
T ss_dssp             CSCHHHHHHHHHHHHHSSEEEEEC-----SSCHHHHHHHHHHHTTSCCCGGGEEEEEGGGSTTHHHHHHHHHHHHSCCSS
T ss_pred             ccCHHHHHHHHHHHccCcEEEEEc-----CCCcCHHHHHHHHHHHcCCCCCCeEEEECccCCChHHHHHHHHHHhCCCCc
Confidence            457889999999999999999999     999999999 99999999   999999999875   578899999999999


Q ss_pred             cEEeeCCeEeechhHHHHHHhcccHHHHHhhcCC
Q psy221           99 PQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQ  132 (205)
Q Consensus        99 PqvFI~G~~IGG~del~~l~e~GeL~~~L~~~~~  132 (205)
                      |+|||||++|||+|++.+++++|+|.++|+.+++
T Consensus        84 P~vfi~g~~igG~d~l~~l~~~g~L~~~L~~~g~  117 (118)
T 3c1r_A           84 PNIYINGKHIGGNDDLQELRETGELEELLEPILA  117 (118)
T ss_dssp             CEEEETTEEEESHHHHHHHHHHTHHHHHHHHHHC
T ss_pred             CEEEECCEEEEcHHHHHHHHHCCcHHHHHHHcCC
Confidence            9999999999999999999999999999987654

>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A

Probab=99.87  E-value=6.2e-22  Score=152.65  Aligned_cols=84  Identities=18%  Similarity=0.408  Sum_probs=79.7

Q ss_pred             cEEEEEeeCCCCCCChHH------HHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh--------CCCCccEEeeCCeEe
Q psy221           43 KVVVFMKGVPEAPRCGFS------NAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT--------SWPTIPQVFINGEFV  108 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C------~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~--------g~~tvPqvFI~G~~I  108 (205)
                      .|+||++     +.||+|      .+|+++|+++||+|+++||++|++.+++|.+.+        |.+++|||||||++|
T Consensus         1 ~V~vYtt-----~~c~~c~~kk~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~~~~~~~~G~~tvPQIFi~~~~i   75 (121)
T 1u6t_A            1 VIRVYIA-----SSSGSTAIKKKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVPENSRPATGYPLPPQIFNESQYR   75 (121)
T ss_dssp             CEEEEEC-----TTCSCHHHHHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSCGGGSCSSSSCCSCEEEETTEEE
T ss_pred             CEEEEec-----CCCCCccchHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhccccccccCCCcCCCEEEECCEEE
Confidence            3899999     999998      799999999999999999999999999999998        899999999999999


Q ss_pred             echhHHHHHHhcccHHHHHhhcC
Q psy221          109 GGCDILLKLHQSGELVEQLEKGD  131 (205)
Q Consensus       109 GG~del~~l~e~GeL~~~L~~~~  131 (205)
                      ||+||+.+|++.|+|.++|+..+
T Consensus        76 GG~Dd~~~l~e~g~L~~lL~~~~   98 (121)
T 1u6t_A           76 GDYDAFFEARENNAVYAFLGLTA   98 (121)
T ss_dssp             EEHHHHHHHHHTTCHHHHHTCCC
T ss_pred             echHHHHHhhhhChHHHHHcCCC
Confidence            99999999999999999996543

>2jad_A Yellow fluorescent protein glutaredoxin fusion protein; electron transport, redox- active center, yeast, GRX1P, transport; HET: PIA; 2.7A {Aequorea victoria}

Probab=99.86  E-value=1.3e-21  Score=175.14  Aligned_cols=102  Identities=27%  Similarity=0.453  Sum_probs=93.6

Q ss_pred             CCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHH-HHHhCCCCeEEEEc------cCCHhHHHHHHHHhCCCCc
Q psy221           26 PYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQ-ILRMHDVPYDSHDV------LKDESIRNGIKEYTSWPTI   98 (205)
Q Consensus        26 ~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~-lL~~~gV~~~e~DI------~~d~~~~~eL~~~~g~~tv   98 (205)
                      ..++++.+++++++++++|+||++     ++||+|.+|++ +|++++|+|+++||      +++++++++|++++|++++
T Consensus       245 ~~s~~~~~~V~~lI~~~~VvVYsk-----~~CPyC~~Ak~~LL~~~gV~y~eidVlEld~~~~~~e~~~~L~~~tG~~TV  319 (362)
T 2jad_A          245 MVSQETIKHVKDLIAENEIFVASK-----TYCPYSHAALNTLFEKLKVPRSKVLVLQLNDMKEGADIQAALYEINGQRTV  319 (362)
T ss_dssp             CCCHHHHHHHHHHHHTCSEEEEEC-----TTCHHHHHHHHHHHTTTCCCTTTEEEEEGGGSTTHHHHHHHHHHHHCCCSS
T ss_pred             ccCHHHHHHHHHHhccCCEEEEEc-----CCCcchHHHHHHHHHHcCCCcceEEEEEeccccCCHHHHHHHHHHHCCCCc
Confidence            457789999999999999999999     99999999997 89999999887776      3467899999999999999


Q ss_pred             cEEeeCCeEeechhHHHHHHhcccHHHHHhhcCC
Q psy221           99 PQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQ  132 (205)
Q Consensus        99 PqvFI~G~~IGG~del~~l~e~GeL~~~L~~~~~  132 (205)
                      |||||||++|||+|++.+|+++|+|.++|+.+++
T Consensus       320 PqVFI~Gk~IGG~DdL~~L~~~GeL~~lL~~~~~  353 (362)
T 2jad_A          320 PNIYINGKHIGGNDDLQELRETGELEELLEPILA  353 (362)
T ss_dssp             CEEEETTEEEESHHHHHHHHHSSHHHHHHHHHC-
T ss_pred             CEEEECCEEEEChHHHHHhhhCChHHHHHHhCch
Confidence            9999999999999999999999999999987754

>1kte_A Thioltransferase; redox-active center, electron transport, acetylation; 2.20A {Sus scrofa} SCOP: c.47.1.1 PDB: 1jhb_A 1b4q_A*

Probab=99.85  E-value=9.9e-21  Score=138.88  Aligned_cols=96  Identities=30%  Similarity=0.563  Sum_probs=89.9

Q ss_pred             HHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCC---eEEEEccCC---HhHHHHHHHHhCCCCccEEeeCC
Q psy221           32 QKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVP---YDSHDVLKD---ESIRNGIKEYTSWPTIPQVFING  105 (205)
Q Consensus        32 ~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~---~~e~DI~~d---~~~~~eL~~~~g~~tvPqvFI~G  105 (205)
                      ++.+++++++++|++|++     ++||+|.+++.+|++++++   |+++||+.+   ++.+++|.+.+|..++|+||++|
T Consensus         2 ~~~~~~~i~~~~v~~f~~-----~~C~~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~i~~~g   76 (105)
T 1kte_A            2 QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGK   76 (105)
T ss_dssp             HHHHHHHCCTTCEEEEEC-----SSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETT
T ss_pred             chHHHhhcccCCEEEEEc-----CCCHhHHHHHHHHHHcCCCCCccEEEEccCCCCHHHHHHHHHHHhCCCCcCeEEECC
Confidence            467889999999999999     9999999999999999999   999999987   57788999999999999999999


Q ss_pred             eEeechhHHHHHHhcccHHHHHhhcCC
Q psy221          106 EFVGGCDILLKLHQSGELVEQLEKGDQ  132 (205)
Q Consensus       106 ~~IGG~del~~l~e~GeL~~~L~~~~~  132 (205)
                      ++|||++++.+++++|+|.++|+.+++
T Consensus        77 ~~i~g~~~~~~~~~~g~L~~~l~~~g~  103 (105)
T 1kte_A           77 ECIGGCTDLESMHKRGELLTRLQQVGA  103 (105)
T ss_dssp             EEEESHHHHHHHHHHTHHHHHHHHHTC
T ss_pred             EEEeccHHHHHHHHCCcHHHHHHHcCC
Confidence            999999999999999999999998765

>2cq9_A GLRX2 protein, glutaredoxin 2; glutathione-S-transferase, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.84  E-value=1.3e-20  Score=145.32  Aligned_cols=109  Identities=22%  Similarity=0.409  Sum_probs=100.1

Q ss_pred             hcCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC---HhHHHHHHHHhCCC
Q psy221           20 HNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD---ESIRNGIKEYTSWP   96 (205)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d---~~~~~eL~~~~g~~   96 (205)
                      +.+...+...++.+.+.+++..++|+||++     ++||+|.+++.+|++++++|+++||+.+   ++.+++|.+.+|..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~i~~~~vvvf~~-----~~Cp~C~~~~~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~~g~~   79 (130)
T 2cq9_A            5 SSGSLENLATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGER   79 (130)
T ss_dssp             SCSCCCCCSCCHHHHHHHHHHHSSEEEEEC-----SSCSHHHHHHHHHHHHTCCCEEEETTTSTTHHHHHHHHHHHHSSC
T ss_pred             ccCCCCcccHHHHHHHHHHHcCCcEEEEEc-----CCChHHHHHHHHHHHcCCCcEEEECcCCcCcHHHHHHHHHHhCCC
Confidence            444456667889999999999999999999     9999999999999999999999999987   77888999999999


Q ss_pred             CccEEeeCCeEeechhHHHHHHhcccHHHHHhhcCCc
Q psy221           97 TIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQK  133 (205)
Q Consensus        97 tvPqvFI~G~~IGG~del~~l~e~GeL~~~L~~~~~~  133 (205)
                      ++|+||+||++|||++++.++++.|+|.++|+.++.+
T Consensus        80 ~vP~l~i~G~~igg~~~l~~~~~~~~L~~~L~~~g~~  116 (130)
T 2cq9_A           80 TVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLK  116 (130)
T ss_dssp             CSSEEEETTEEEEEHHHHHHHHHHTSSHHHHHHHSSS
T ss_pred             CcCEEEECCEEEcChHHHHHHHHcCcHHHHHHHcCcH
Confidence            9999999999999999999999999999999998765

>2ht9_A Glutaredoxin-2; thioredoxin fold, iron-sulfur cluster, 2Fe2S, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: GSH; 1.90A {Homo sapiens} PDB: 2fls_A*

Probab=99.84  E-value=1.4e-20  Score=148.75  Aligned_cols=113  Identities=21%  Similarity=0.381  Sum_probs=95.0

Q ss_pred             hhhhhcCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC---HhHHHHHHHH
Q psy221           16 NSRFHNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD---ESIRNGIKEY   92 (205)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d---~~~~~eL~~~   92 (205)
                      ...++++..++..+++++.++++++.++|+||++     +|||+|.+++.+|++++++|+++||+.+   ++.+++|.+.
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~Vvvf~~-----~~Cp~C~~~k~~L~~~~i~~~~vdId~~~~~~~~~~~L~~~   97 (146)
T 2ht9_A           23 MESNTSSSLENLATAPVNQIQETISDNCVVIFSK-----TSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKM   97 (146)
T ss_dssp             -----------CTTCCHHHHHHHHHHCSEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEEGGGCTTHHHHHHHHHHH
T ss_pred             hchhccCCCccchhHHHHHHHHHhcCCCEEEEEC-----CCChhHHHHHHHHHHcCCCeEEEECccCcCCHHHHHHHHHH
Confidence            3444455445556678888999999999999999     9999999999999999999999999987   7788899999


Q ss_pred             hCCCCccEEeeCCeEeechhHHHHHHhcccHHHHHhhcCCc
Q psy221           93 TSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEKGDQK  133 (205)
Q Consensus        93 ~g~~tvPqvFI~G~~IGG~del~~l~e~GeL~~~L~~~~~~  133 (205)
                      +|..++|+||+||++|||++++.+++++|+|.++|+.++.+
T Consensus        98 ~g~~tvP~ifi~G~~igG~d~l~~l~~~g~L~~~L~~~g~~  138 (146)
T 2ht9_A           98 TGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQCYLK  138 (146)
T ss_dssp             HSCCCSCEEEETTEEEESHHHHHHHHHTTCHHHHHHHTTC-
T ss_pred             hCCCCcCeEEECCEEEeCchHHHHHHHcChHHHHHHHcCcc
Confidence            99999999999999999999999999999999999988764

>2hze_A Glutaredoxin-1; thioredoxin fold, arsenic, dimethylarsenite., electron trans oxidoreductase; 1.80A {Ectromelia virus} PDB: 2hzf_A 2hze_B

Probab=99.83  E-value=4.6e-20  Score=138.61  Aligned_cols=98  Identities=21%  Similarity=0.386  Sum_probs=91.9

Q ss_pred             HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCC---eEEEEccCCH---hHHHHHHHHhCCCCccEEee
Q psy221           30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVP---YDSHDVLKDE---SIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~---~~e~DI~~d~---~~~~eL~~~~g~~tvPqvFI  103 (205)
                      -.++.+++++++++|++|++     ++||+|.+++.+|++++++   |+++||+.++   +.+++|.+.+|..++|+||+
T Consensus         7 ~~~~~~~~~i~~~~vv~f~~-----~~Cp~C~~~~~~L~~~~~~~~~~~~vdi~~~~~~~~~~~~l~~~~g~~~vP~v~i   81 (114)
T 2hze_A            7 MAEEFVQQRLANNKVTIFVK-----YTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGKTVPRIFF   81 (114)
T ss_dssp             CHHHHHHTTCCTTCEEEEEC-----TTCHHHHHHHHHHTTSCBCTTSEEEEEGGGSSSHHHHHHHHHHHHSCCSSCEEEE
T ss_pred             HHHHHHHHHhccCCEEEEEe-----CCChhHHHHHHHHHHcCCCcCceEEEEccCCCChHHHHHHHHHHhCCCCcCEEEE
Confidence            35788899999999999999     9999999999999999999   9999999886   77889999999999999999


Q ss_pred             CCeEeechhHHHHHHhcccHHHHHhhcCC
Q psy221          104 NGEFVGGCDILLKLHQSGELVEQLEKGDQ  132 (205)
Q Consensus       104 ~G~~IGG~del~~l~e~GeL~~~L~~~~~  132 (205)
                      ||++|||++++.+++++|+|.++|+.+++
T Consensus        82 ~g~~igg~~~~~~~~~~~~L~~~L~~~g~  110 (114)
T 2hze_A           82 GKTSIGGYSDLLEIDNMDALGDILSSIGV  110 (114)
T ss_dssp             TTEEEESHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             CCEEEeCcHHHHHHHHCChHHHHHHHcCC
Confidence            99999999999999999999999998765

>1aba_A Glutaredoxin; electron transport; HET: MES; 1.45A {Enterobacteria phage T4} SCOP: c.47.1.1 PDB: 1aaz_A 1de1_A 1de2_A

Probab=99.81  E-value=1.3e-19  Score=129.88  Aligned_cols=75  Identities=21%  Similarity=0.417  Sum_probs=67.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEcc-----CCHhHHHHHHHHhCCC-----CccEEee-CCeEeech
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVL-----KDESIRNGIKEYTSWP-----TIPQVFI-NGEFVGGC  111 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~-----~d~~~~~eL~~~~g~~-----tvPqvFI-~G~~IGG~  111 (205)
                      +|+||+++ +..++||+|.+|+++|+++||+|+++||+     .+++.+++|++++|++     ++|+||| ||++|||+
T Consensus         1 ~v~iY~~~-~~~~~Cp~C~~ak~~L~~~gi~y~~idI~~~~~~~~~~~~~~l~~~~g~~~~~~~tvP~v~i~~g~~igG~   79 (87)
T 1aba_A            1 MFKVYGYD-SNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGF   79 (87)
T ss_dssp             CEEEEECC-TTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESH
T ss_pred             CEEEEEeC-CCCCcCccHHHHHHHHHHcCCCEEEEEeeccccccCHHHHHHHHHHhCCCCCCCCccCEEEEECCEEEeCH
Confidence            48999991 11129999999999999999999999999     8899999999999999     9999999 99999999


Q ss_pred             hHHHHHH
Q psy221          112 DILLKLH  118 (205)
Q Consensus       112 del~~l~  118 (205)
                      |++.+|+
T Consensus        80 d~l~~~~   86 (87)
T 1aba_A           80 DQLREYF   86 (87)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999886

>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Brucella melitensis}

Probab=99.80  E-value=7.9e-19  Score=125.93  Aligned_cols=86  Identities=26%  Similarity=0.526  Sum_probs=81.1

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhc
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQS  120 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~  120 (205)
                      +++|++|++     ++||+|++++.+|++++++|+++||+.+++.++++.+.++..++|++|+||++|||++++.+++++
T Consensus         5 m~~v~ly~~-----~~C~~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~   79 (92)
T 2khp_A            5 MVDVIIYTR-----PGCPYCARAKALLARKGAEFNEIDASATPELRAEMQERSGRNTFPQIFIGSVHVGGCDDLYALEDE   79 (92)
T ss_dssp             CCCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEESTTSHHHHHHHHHHHTSSCCCEEEETTEEEESHHHHHHHHTT
T ss_pred             cccEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEcCHHHHHHHHHc
Confidence            457999999     999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHhhcCC
Q psy221          121 GELVEQLEKGDQ  132 (205)
Q Consensus       121 GeL~~~L~~~~~  132 (205)
                      |+|.++|+ .|+
T Consensus        80 ~~l~~~l~-~g~   90 (92)
T 2khp_A           80 GKLDSLLK-TGK   90 (92)
T ss_dssp             TCHHHHHH-HSS
T ss_pred             CCHHHHHh-ccC
Confidence            99999998 443

>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 3grx_A*

Probab=99.79  E-value=4.4e-19  Score=123.92  Aligned_cols=81  Identities=23%  Similarity=0.464  Sum_probs=77.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhccc
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGE  122 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~Ge  122 (205)
                      +|++|++     ++||+|.+++.+|++++++|+++||+.+++.++++.+.+|..++|++|+||+.|||++++.+++++|+
T Consensus         2 ~i~~y~~-----~~C~~C~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~~g~   76 (82)
T 1fov_A            2 NVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARGG   76 (82)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTTC
T ss_pred             cEEEEEC-----CCChhHHHHHHHHHHCCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHHHHCCC
Confidence            6899999     99999999999999999999999999998888999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q psy221          123 LVEQLE  128 (205)
Q Consensus       123 L~~~L~  128 (205)
                      |.++|+
T Consensus        77 l~~~l~   82 (82)
T 1fov_A           77 LDPLLK   82 (82)
T ss_dssp             SHHHHC
T ss_pred             HHHHhC
Confidence            999884

>2lqo_A Putative glutaredoxin RV3198.1/MT3292; TRX fold, oxidoreductase; NMR {Mycobacterium tuberculosis}

Probab=99.78  E-value=5.6e-19  Score=129.73  Aligned_cols=68  Identities=15%  Similarity=0.321  Sum_probs=63.0

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh-CCCCccEEee-CCeEeechh
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT-SWPTIPQVFI-NGEFVGGCD  112 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~-g~~tvPqvFI-~G~~IGG~d  112 (205)
                      ...+|+||++     ++||||.++|++|+++||+|+++||+.|++.++++.+++ |.+++|+||| ||..++|++
T Consensus         2 ~ta~I~vYs~-----~~Cp~C~~aK~~L~~~gi~y~~idi~~d~~~~~~~~~~~~G~~tVP~I~i~Dg~~l~~~~   71 (92)
T 2lqo_A            2 VTAALTIYTT-----SWCGYCLRLKTALTANRIAYDEVDIEHNRAAAEFVGSVNGGNRTVPTVKFADGSTLTNPS   71 (92)
T ss_dssp             CSSCEEEEEC-----TTCSSHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHHSSSSSCSCEEEETTSCEEESCC
T ss_pred             CCCcEEEEcC-----CCCHhHHHHHHHHHhcCCceEEEEcCCCHHHHHHHHHHcCCCCEeCEEEEeCCEEEeCCC
Confidence            3568999999     999999999999999999999999999999999999986 7999999999 678888875

>2klx_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN structural genomics, seattle structural genomics center for infectious disease; NMR {Bartonella henselae}

Probab=99.76  E-value=1.7e-18  Score=123.82  Aligned_cols=82  Identities=28%  Similarity=0.572  Sum_probs=77.3

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh-CCCCccEEeeCCeEeechhHHHHHHh
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT-SWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~-g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      +++|++|++     ++||+|++++.+|++++++|+++||+  ++.++++.+.+ |..++|+||+||++|||++++.++++
T Consensus         5 m~~v~~y~~-----~~C~~C~~~~~~L~~~~i~~~~vdv~--~~~~~~l~~~~~~~~~vP~l~~~g~~i~g~~~i~~~~~   77 (89)
T 2klx_A            5 MKEIILYTR-----PNCPYCKRARDLLDKKGVKYTDIDAS--TSLRQEMVQRANGRNTFPQIFIGDYHVGGCDDLYALEN   77 (89)
T ss_dssp             CCCEEEESC-----SCCTTTHHHHHHHHHHTCCEEEECSC--HHHHHHHHHHHHSSCCSCEEEETTEECCSHHHHHHHHH
T ss_pred             cceEEEEEC-----CCChhHHHHHHHHHHcCCCcEEEECC--HHHHHHHHHHhCCCCCcCEEEECCEEEeChHHHHHHHH
Confidence            467999999     99999999999999999999999998  77788898888 99999999999999999999999999


Q ss_pred             cccHHHHHhh
Q psy221          120 SGELVEQLEK  129 (205)
Q Consensus       120 ~GeL~~~L~~  129 (205)
                      +|+|.++|++
T Consensus        78 ~g~l~~~l~~   87 (89)
T 2klx_A           78 KGKLDSLLQD   87 (89)
T ss_dssp             HTTHHHHHHH
T ss_pred             cCcHHHHHhh
Confidence            9999999975

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=99.76  E-value=1.8e-18  Score=161.81  Aligned_cols=110  Identities=21%  Similarity=0.414  Sum_probs=101.8

Q ss_pred             HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC---HhHHHHHHHHhCCCCccEEeeCCeE
Q psy221           31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD---ESIRNGIKEYTSWPTIPQVFINGEF  107 (205)
Q Consensus        31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d---~~~~~eL~~~~g~~tvPqvFI~G~~  107 (205)
                      .++.+++++++++|+||++     ++||+|.+++++|++++++|+++||+.+   ++++++|++++|++++|+||+||++
T Consensus         7 ~~~~v~~~i~~~~v~vy~~-----~~Cp~C~~~k~~L~~~~i~~~~~dv~~~~~~~~~~~~l~~~~g~~tvP~v~i~g~~   81 (598)
T 2x8g_A            7 TSQWLRKTVDSAAVILFSK-----TTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKCLASFSKIETVPQMFVRGKF   81 (598)
T ss_dssp             HHHHHHHHHHHCSEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEEGGGSTTHHHHHHHTHHHHSCCCSCEEEETTEE
T ss_pred             HHHHHHHHhccCCEEEEEC-----CCChhHHHHHHHHHHCCCCcEEEEcccCcchHHHHHHHHHHhCCceeCEEEECCEE
Confidence            3678999999999999999     9999999999999999999999999875   7788999999999999999999999


Q ss_pred             eechhHHHHHHhcccHHHHHhhcCCccccceeecccCCC
Q psy221          108 VGGCDILLKLHQSGELVEQLEKGDQKRKQFILINYISGD  146 (205)
Q Consensus       108 IGG~del~~l~e~GeL~~~L~~~~~~~~~~~~~~~gcGg  146 (205)
                      |||++++.++++.|+|++++... ...+|.++||+|.+|
T Consensus        82 igG~~~l~~~~~~g~L~~~l~~~-~~~~dvvVIG~GpAG  119 (598)
T 2x8g_A           82 IGDSQTVLKYYSNDELAGIVNES-KYDYDLIVIGGGSGG  119 (598)
T ss_dssp             EECHHHHHHHHHTTCHHHHHHCC-SSSEEEEEECCSHHH
T ss_pred             EEeeehhhhhhhcCcchhhcccc-cccccEEEECCCccH
Confidence            99999999999999999999764 446889999999887

>3msz_A Glutaredoxin 1; alpha-beta sandwich, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: GSH; 2.05A {Francisella tularensis subsp} PDB: 3lgc_A*

Probab=99.71  E-value=6.1e-17  Score=114.41  Aligned_cols=75  Identities=20%  Similarity=0.298  Sum_probs=66.8

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCC-----CCccEEeeCCeEeechhH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSW-----PTIPQVFINGEFVGGCDI  113 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~-----~tvPqvFI~G~~IGG~de  113 (205)
                      ..+|+||++     ++||+|.+++.+|++++++|++++|+.++  ..+++|.+++|.     .++|+|||||++|||+++
T Consensus         3 ~m~v~ly~~-----~~Cp~C~~~~~~L~~~~i~~~~~~vd~~~~~~~~~el~~~~g~~~~~~~~vP~i~i~g~~i~g~~~   77 (89)
T 3msz_A            3 AMKVKIYTR-----NGCPYCVWAKQWFEENNIAFDETIIDDYAQRSKFYDEMNQSGKVIFPISTVPQIFIDDEHIGGFTE   77 (89)
T ss_dssp             CCCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHHHHHTTTCCSSCCCSSCEEEETTEEEESHHH
T ss_pred             ceEEEEEEc-----CCChhHHHHHHHHHHcCCCceEEEeecCCChhHHHHHHHHhCCCCCCCCccCEEEECCEEEeChHH
Confidence            357999999     99999999999999999999999887654  356788888898     999999999999999999


Q ss_pred             HHHHHhc
Q psy221          114 LLKLHQS  120 (205)
Q Consensus       114 l~~l~e~  120 (205)
                      +.+++++
T Consensus        78 i~~~~~~   84 (89)
T 3msz_A           78 LKANADK   84 (89)
T ss_dssp             HHHTHHH
T ss_pred             HHHHHHH
Confidence            9998764

>2e7p_A Glutaredoxin; thioredoxin fold, poplar, electron transport; HET: GSH; 2.10A {Populus tremula x populus tremuloides} PDB: 1z7p_A 1z7r_A

Probab=99.64  E-value=4.3e-15  Score=109.87  Aligned_cols=102  Identities=30%  Similarity=0.558  Sum_probs=89.2

Q ss_pred             hHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHh---HHHHHHHHhCCCCccEEeeCC
Q psy221           29 TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES---IRNGIKEYTSWPTIPQVFING  105 (205)
Q Consensus        29 ~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~---~~~eL~~~~g~~tvPqvFI~G  105 (205)
                      ++.++.++++++.++|++|+.     +|||+|++++.+|++++++|..+||+.++.   .+.++.+..|..++|++|++|
T Consensus         7 ~~~~~~~~~~~~~~~vv~f~a-----~~C~~C~~~~~~l~~~~~~~~~v~v~~~~~~~~~~~~l~~~~~v~~~Pt~~~~g   81 (116)
T 2e7p_A            7 DAALKKAKELASSAPVVVFSK-----TYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALAHWTGRGTVPNVFIGG   81 (116)
T ss_dssp             HHHHHHHHHHHTSSSEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEEGGGSTTHHHHHHHHHHHHSCCSSCEEEETT
T ss_pred             HHHHHHHHHHHcCCCEEEEEC-----CCChhHHHHHHHHHHcCCCeEEEEccCCCChHHHHHHHHHHhCCCCcCEEEECC
Confidence            456778888998899999999     999999999999999999999999987654   456777778999999999999


Q ss_pred             eEeechhHHHHHHhcccHHHHHhhcCCccc
Q psy221          106 EFVGGCDILLKLHQSGELVEQLEKGDQKRK  135 (205)
Q Consensus       106 ~~IGG~del~~l~e~GeL~~~L~~~~~~~~  135 (205)
                      +.+|+++.+..++..++|.++|+++++...
T Consensus        82 ~~v~~~~~~~~~~~~~~l~~~l~~~g~~~k  111 (116)
T 2e7p_A           82 KQIGGCDTVVEKHQRNELLPLLQDAAATAK  111 (116)
T ss_dssp             EEEECHHHHHHHHHTTCHHHHHHHTTC---
T ss_pred             EEECChHHHHHHHhCChHHHHHHHcccccc
Confidence            999999999999999999999998876543

>3nzn_A Glutaredoxin; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics, rossmann fold; 1.10A {Methanosarcina mazei}

Probab=99.59  E-value=3.4e-15  Score=109.97  Aligned_cols=69  Identities=16%  Similarity=0.279  Sum_probs=60.5

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-H----hHHHHHHHHhCCCCccEEeeCC-eEeechhH
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-E----SIRNGIKEYTSWPTIPQVFING-EFVGGCDI  113 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-~----~~~~eL~~~~g~~tvPqvFI~G-~~IGG~de  113 (205)
                      +.++|+||++     ++||+|.+++.+|++++++|+++||+.+ +    ++.++|++.+|..++|+|||+| ++|||+++
T Consensus        20 ~~~~v~ly~~-----~~Cp~C~~ak~~L~~~~i~y~~vdI~~~~~~~~~~~~~~l~~~~g~~~vP~l~i~~~~~igg~~~   94 (103)
T 3nzn_A           20 DRGKVIMYGL-----STCVWCKKTKKLLTDLGVDFDYVYVDRLEGKEEEEAVEEVRRFNPSVSFPTTIINDEKAIVGFKE   94 (103)
T ss_dssp             CCSCEEEEEC-----SSCHHHHHHHHHHHHHTBCEEEEEGGGCCHHHHHHHHHHHHHHCTTCCSCEEEETTTEEEESCCH
T ss_pred             CCCeEEEEcC-----CCCchHHHHHHHHHHcCCCcEEEEeeccCcccHHHHHHHHHHhCCCCccCEEEECCCEEEEcCCH
Confidence            4678999999     9999999999999999999999999873 3    3445556677999999999999 99999984

>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A

Probab=99.59  E-value=1.1e-15  Score=107.18  Aligned_cols=75  Identities=16%  Similarity=0.387  Sum_probs=66.9

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHh-----CCCCeEEEEccCCHhHHHHHHHHhC--CCCccEEeeCCeEeechhHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRM-----HDVPYDSHDVLKDESIRNGIKEYTS--WPTIPQVFINGEFVGGCDILL  115 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~-----~gV~~~e~DI~~d~~~~~eL~~~~g--~~tvPqvFI~G~~IGG~del~  115 (205)
                      +|++|++     ++||+|.+++.+|++     .+++|.++|++.+++.+++|.+.+|  ..++|+||+||+.|||++++.
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~l~~~~~~i~~~~vdi~~~~~~~~~l~~~~~~~~~~vP~i~~~g~~i~~~~~l~   76 (85)
T 1ego_A            2 QTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDFA   76 (85)
T ss_dssp             EEEEECC-----TTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHHH
T ss_pred             EEEEEeC-----CCCCCHHHHHHHHHHHHhcCCCceEEEEecccChHHHHHHHHHhCCCCceeCeEEECCEEEECHHHHH
Confidence            6899999     999999999999998     7899999999877655677888888  789999999999999999999


Q ss_pred             HHHhccc
Q psy221          116 KLHQSGE  122 (205)
Q Consensus       116 ~l~e~Ge  122 (205)
                      ++.+++-
T Consensus        77 ~~~~~~~   83 (85)
T 1ego_A           77 AWVKENL   83 (85)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9887654

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.58  E-value=4.1e-15  Score=124.03  Aligned_cols=73  Identities=27%  Similarity=0.518  Sum_probs=67.0

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .+.+|+||++     ++||+|.+++++|++++++|+++||+.+++ +++|++++|..++|+|||||++|||++++.++.
T Consensus       168 ~~~~i~ly~~-----~~Cp~C~~a~~~L~~~~i~~~~~~i~~~~~-~~~l~~~~g~~~vP~~~~~g~~i~g~~~i~~~l  240 (241)
T 1nm3_A          168 VQESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSGRTTVPQVFIGGKHIGGSDDLEKYF  240 (241)
T ss_dssp             CCCCEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHTCCSSSCEEEETTEEEESHHHHHHC-
T ss_pred             ccceEEEEEC-----CCChHHHHHHHHHHHcCCceEEEECCCchH-HHHHHHHhCCCCcCEEEECCEEEECHHHHHHHh
Confidence            4678999999     999999999999999999999999998865 488999999999999999999999999998764

>3ic4_A Glutaredoxin (GRX-1); structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomic oxidoreductase; 1.70A {Archaeoglobus fulgidus}

Probab=99.57  E-value=4.2e-15  Score=106.32  Aligned_cols=67  Identities=13%  Similarity=0.266  Sum_probs=60.0

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC-----CHhHHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK-----DESIRNGIKEYTSWPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~-----d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d  112 (205)
                      +.+|+||++     ++||+|++++.+|++++++|+++||+.     +++..++|.+.+|..++|+|++||++|||++
T Consensus        11 M~~v~ly~~-----~~Cp~C~~~~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~l~~~~g~~~vP~l~~~g~~i~G~~   82 (92)
T 3ic4_A           11 MAEVLMYGL-----STCPHCKRTLEFLKREGVDFEVIWIDKLEGEERKKVIEKVHSISGSYSVPVVVKGDKHVLGYN   82 (92)
T ss_dssp             CSSSEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEEGGGCCHHHHHHHHHHHHHHHSSSCSCEEEETTEEEESCC
T ss_pred             CceEEEEEC-----CCChHHHHHHHHHHHcCCCcEEEEeeeCCccchHHHHHHHHHhcCCCCcCEEEECCEEEeCCC
Confidence            357999999     999999999999999999999999984     2344588888889999999999999999996

>1h75_A Glutaredoxin-like protein NRDH; electron transport, thioredoxin, redox protein; 1.7A {Escherichia coli} SCOP: c.47.1.1

Probab=99.49  E-value=8.1e-14  Score=96.97  Aligned_cols=64  Identities=9%  Similarity=0.256  Sum_probs=59.3

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d  112 (205)
                      +|++|+.     ++||+|++++.+|++++++|+++|++.+++..+++++ .|..++|++|+||+.++|++
T Consensus         2 ~v~~f~~-----~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~-~g~~~vP~~~~~g~~~~g~~   65 (81)
T 1h75_A            2 RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDLSWSGFR   65 (81)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTEEEESCC
T ss_pred             EEEEEcC-----CCChhHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHH-hCCCccCEEEECCEEEecCC
Confidence            6899999     9999999999999999999999999999888877765 58899999999999999987

>1r7h_A NRDH-redoxin; thioredoxin, glutaredoxin, redox protein, domain swapping, electron transport; 2.69A {Corynebacterium ammoniagenes} SCOP: c.47.1.1

Probab=99.48  E-value=2.2e-13  Score=92.98  Aligned_cols=64  Identities=22%  Similarity=0.418  Sum_probs=59.1

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d  112 (205)
                      +|++|+.     ++||+|.+++.+|++++++|+.+|++.+++..++++. .|..++|++++||+.++|++
T Consensus         2 ~i~~y~~-----~~C~~C~~~~~~l~~~~i~~~~~di~~~~~~~~~~~~-~~~~~vP~l~~~g~~~~g~~   65 (75)
T 1r7h_A            2 SITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMA-LGYVQAPVVEVDGEHWSGFR   65 (75)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCBCCCEEEETTEEEESCC
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHH-cCCCccCEEEECCeEEcCCC
Confidence            5899999     9999999999999999999999999999888777754 78889999999999999987

>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}

Probab=99.24  E-value=6.4e-12  Score=87.70  Aligned_cols=71  Identities=13%  Similarity=0.160  Sum_probs=57.3

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHH----HHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe--EeechhHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQ----ILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE--FVGGCDILL  115 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~----lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~--~IGG~del~  115 (205)
                      .+|++|++     +|||+|++++.    ++++++++|+.+||+.+++..+ +.+..|..++|+++|||+  ++|+..+..
T Consensus         2 ~~~~~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~gv~~vPt~~i~g~~~~~G~~~~~~   75 (80)
T 2k8s_A            2 ASKAIFYH-----AGCPVCVSAEQAVANAIDPSKYTVEIVHLGTDKARIA-EAEKAGVKSVPALVIDGAAFHINFGAGID   75 (80)
T ss_dssp             CEEEEEEE-----CSCHHHHHHHHHHHHHSCTTTEEEEEEETTTCSSTHH-HHHHHTCCEEEEEEETTEEEEEEEEEEHH
T ss_pred             cceEEEeC-----CCCCchHHHHHHHHHHHHhcCCeEEEEEecCChhhHH-HHHHcCCCcCCEEEECCEEEEeccCcCHH
Confidence            46899999     99999999999    6677888999999987533333 345568899999999999  888877666


Q ss_pred             HHH
Q psy221          116 KLH  118 (205)
Q Consensus       116 ~l~  118 (205)
                      +|.
T Consensus        76 ~l~   78 (80)
T 2k8s_A           76 DLK   78 (80)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            654

>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1

Probab=99.23  E-value=1.4e-11  Score=90.36  Aligned_cols=76  Identities=20%  Similarity=0.282  Sum_probs=61.3

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHH--hCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE--eechhHHH
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILR--MHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF--VGGCDILL  115 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~--~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~--IGG~del~  115 (205)
                      ....|++|++     +|||+|++++.+|+  ..+++|.++||+. ++. ++|.+.+| .++|+||+||+.  +||++.  
T Consensus        15 ~~~~v~~f~~-----~~C~~C~~~~~~L~~l~~~i~~~~vdi~~-~~~-~el~~~~g-~~vP~l~~~g~~~~~~g~~~--   84 (100)
T 1wjk_A           15 ALPVLTLFTK-----APCPLCDEAKEVLQPYKDRFILQEVDITL-PEN-STWYERYK-FDIPVFHLNGQFLMMHRVNT--   84 (100)
T ss_dssp             CCCEEEEEEC-----SSCHHHHHHHHHTSTTSSSSEEEEEETTS-STT-HHHHHHSS-SSCSEEEESSSEEEESSCCH--
T ss_pred             CCCEEEEEeC-----CCCcchHHHHHHHHHhhhCCeEEEEECCC-cch-HHHHHHHC-CCCCEEEECCEEEEecCCCH--
Confidence            3457899999     99999999999999  6689999999983 222 56777788 999999999998  788763  


Q ss_pred             HHHhcccHHHHHhhc
Q psy221          116 KLHQSGELVEQLEKG  130 (205)
Q Consensus       116 ~l~e~GeL~~~L~~~  130 (205)
                           .+|.++|+..
T Consensus        85 -----~~l~~~l~~~   94 (100)
T 1wjk_A           85 -----SKLEKQLRKL   94 (100)
T ss_dssp             -----HHHHHHHHSS
T ss_pred             -----HHHHHHHHHH
Confidence                 3577777643

>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}

Probab=99.14  E-value=1e-10  Score=87.87  Aligned_cols=62  Identities=15%  Similarity=0.204  Sum_probs=52.4

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHh----CCCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEe--echh
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRM----HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFV--GGCD  112 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~I--GG~d  112 (205)
                      +..|++|++     +|||+|+.++.+|++    ++++|+++||+.++++.+    ..|.. +|+|  |+||+.+  |+++
T Consensus        29 m~~vv~y~~-----~~C~~C~~a~~~L~~l~~e~~i~~~~vDId~d~~l~~----~ygv~-VP~l~~~~dG~~v~~g~~~   98 (107)
T 2fgx_A           29 PRKLVVYGR-----EGCHLCEEMIASLRVLQKKSWFELEVINIDGNEHLTR----LYNDR-VPVLFAVNEDKELCHYFLD   98 (107)
T ss_dssp             CCCEEEEEC-----SSCHHHHHHHHHHHHHHHHSCCCCEEEETTTCHHHHH----HSTTS-CSEEEETTTTEEEECSSCC
T ss_pred             ccEEEEEeC-----CCChhHHHHHHHHHHHHHhcCCeEEEEECCCCHHHHH----HhCCC-CceEEEEECCEEEEecCCC
Confidence            467999999     999999999999998    899999999999886433    44654 9999  9999987  5554

>1ttz_A Conserved hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative; 2.11A {Xanthomonas campestris} SCOP: c.47.1.1 PDB: 1xpv_A

Probab=99.14  E-value=1.6e-10  Score=83.38  Aligned_cols=59  Identities=12%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCC-eEEEEccCCHhHHHHHHHHhCCCCccEEe-eCCeEeech
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVP-YDSHDVLKDESIRNGIKEYTSWPTIPQVF-INGEFVGGC  111 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~-~~e~DI~~d~~~~~eL~~~~g~~tvPqvF-I~G~~IGG~  111 (205)
                      +|++|++     +||++|+.++.+|++.+++ |.++||++++++.+    ..|.. +|+|+ +||+.++|.
T Consensus         2 ~vv~f~a-----~~C~~C~~~~~~L~~~~~~~~~~vdid~~~~l~~----~~g~~-vPtl~~~~G~~v~g~   62 (87)
T 1ttz_A            2 ALTLYQR-----DDCHLCDQAVEALAQARAGAFFSVFIDDDAALES----AYGLR-VPVLRDPMGRELDWP   62 (87)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHTTCCCEEEEECTTCHHHHH----HHTTT-CSEEECTTCCEEESC
T ss_pred             EEEEEEC-----CCCchHHHHHHHHHHHHHhheEEEECCCCHHHHH----HhCCC-cCeEEEECCEEEeCC
Confidence            5999999     9999999999999999997 99999999886444    34666 99999 899999653

>1z3e_A Regulatory protein SPX; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: c.47.1.12 PDB: 3gfk_A 3ihq_A

Probab=98.83  E-value=6.5e-09  Score=80.04  Aligned_cols=46  Identities=17%  Similarity=0.406  Sum_probs=40.4

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT   93 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~   93 (205)
                      .|+||++     ++||+|.+|+++|+++|++|+++||..++..+++|.++.
T Consensus         2 mi~lY~~-----~~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~el~~~l   47 (132)
T 1z3e_A            2 MVTLYTS-----PSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQIL   47 (132)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHH
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCceEEEEccCCCccHHHHHHHH
Confidence            4899999     999999999999999999999999998876666666553

>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure 2 function project, S2F, structu genomics, unknown function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa} SCOP: c.47.1.12

Probab=98.81  E-value=5.8e-09  Score=78.37  Aligned_cols=36  Identities=25%  Similarity=0.300  Sum_probs=33.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE   83 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~   83 (205)
                      .|+||++     ++||+|++|+++|+++||+|+++||..++
T Consensus         1 ~i~iY~~-----~~C~~C~kak~~L~~~gi~~~~~di~~~~   36 (114)
T 1rw1_A            1 TYVLYGI-----KACDTMKKARTWLDEHKVAYDFHDYKAVG   36 (114)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHTTCCEEEEEHHHHC
T ss_pred             CEEEEEC-----CCChHHHHHHHHHHHCCCceEEEeecCCC
Confidence            3889999     99999999999999999999999998664

>2axo_A Hypothetical protein ATU2684; alpha beta protein., structural genomics, PSI, protein struc initiative; 1.80A {Agrobacterium tumefaciens str} SCOP: c.47.1.19

Probab=98.81  E-value=3e-09  Score=91.84  Aligned_cols=67  Identities=25%  Similarity=0.370  Sum_probs=50.9

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhC----CC---CeEEEEcc----CCH-------hHHHHHHHHhCCCCc--cEE
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH----DV---PYDSHDVL----KDE-------SIRNGIKEYTSWPTI--PQV  101 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~----gV---~~~e~DI~----~d~-------~~~~eL~~~~g~~tv--Pqv  101 (205)
                      ..|+||++     ++||+|.+|+++|+++    ++   .|+..+++    .|+       ...+++.+..|.+++  |||
T Consensus        44 ~~VelyTs-----~gCp~C~~Ak~lL~~~~~~~~vi~l~~~v~~~dylgw~D~~a~~~~~~r~~~~~~~~G~~tVyTPqI  118 (270)
T 2axo_A           44 GVVELFTS-----QGCASCPPADEALRKMIQKGDVVGLSYHVDYWNYLGWTDSLASKENTERQYGYMRALGRNGVYTPQA  118 (270)
T ss_dssp             CEEEEEEC-----TTCTTCHHHHHHHHHHHHHTSSEEEEEECSTTCSSSSCCTTCCHHHHHHHHHHHHHTTCSCCCSSEE
T ss_pred             cEEEEEeC-----CCCCChHHHHHHHHHhhccCCeeeEEEEEEEecccccccchhhhhhhHHHHHHHHHhCCCcccCCEE
Confidence            57999999     9999999999999988    76   45522222    222       223446666788899  999


Q ss_pred             eeCCe-EeechhH
Q psy221          102 FINGE-FVGGCDI  113 (205)
Q Consensus       102 FI~G~-~IGG~de  113 (205)
                      ||||+ ++||+|.
T Consensus       119 ~Ing~~~v~G~d~  131 (270)
T 2axo_A          119 ILNGRDHVKGADV  131 (270)
T ss_dssp             EETTTEEEETTCH
T ss_pred             EECCEEeecCCCH
Confidence            99999 7999984

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.80  E-value=1.3e-08  Score=94.07  Aligned_cols=118  Identities=13%  Similarity=0.130  Sum_probs=84.0

Q ss_pred             hcCCCCCCChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhC
Q psy221           20 HNAWRTPYSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        20 ~~~~~~~~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      ++......+++..+.++++.....|++|+.     +|||+|..+..+|++.     +|.+..+|++..+    ++.+..+
T Consensus        97 ~~~~~~~~~~~~~~~i~~~~~~~~i~~f~a-----~~C~~C~~~~~~l~~~a~~~~~v~~~~vd~~~~~----~~~~~~~  167 (521)
T 1hyu_A           97 TGGHPSKEAQSLLEQIRDIDGDFEFETYYS-----LSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQ----NEITERN  167 (521)
T ss_dssp             HTTCCCCSCHHHHHHHHHCCSCEEEEEEEC-----TTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCH----HHHHHTT
T ss_pred             hcCCCCCCCHHHHHHHHhcCCCcceEEEEC-----CCCcCcHHHHHHHHHHHhHcCceEEEEEechhhH----HHHHHhC
Confidence            333344557788888876666678999999     9999999998888643     4667778877655    4555668


Q ss_pred             CCCccEEeeCCeEeech----hHHHHHHhcccHHHHHhhc-CCccccceeecccCCC
Q psy221           95 WPTIPQVFINGEFVGGC----DILLKLHQSGELVEQLEKG-DQKRKQFILINYISGD  146 (205)
Q Consensus        95 ~~tvPqvFI~G~~IGG~----del~~l~e~GeL~~~L~~~-~~~~~~~~~~~~gcGg  146 (205)
                      ..++|++++||+.++.-    +++.++.+.+.+.+..... ....++.+++|+|-+|
T Consensus       168 i~svPt~~i~g~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~~~~dVvIIGgG~AG  224 (521)
T 1hyu_A          168 VMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEALNKRDAYDVLIVGSGPAG  224 (521)
T ss_dssp             CCSSSEEEETTEEEEESCCCHHHHHHHHCCSSCCHHHHHHHTSCCEEEEEECCSHHH
T ss_pred             CCccCEEEECCEEEecCCCCHHHHHHHHhhcccccccccccccCcccEEEECCcHHH
Confidence            88999999999988532    6677777766552222211 2246788899988876

>2kok_A Arsenate reductase; brucellosis, zoonotic, oxidoreductase, S genomics, seattle structural genomics center for infectious ssgcid; NMR {Brucella abortus}

Probab=98.77  E-value=1e-08  Score=77.66  Aligned_cols=47  Identities=17%  Similarity=0.238  Sum_probs=38.4

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH---hHHHHHHHHhC
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE---SIRNGIKEYTS   94 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~---~~~~eL~~~~g   94 (205)
                      .|+||++     ++|++|++|+++|+++||+|+++||..++   +..+++.+.+|
T Consensus         6 ~i~iY~~-----~~C~~C~ka~~~L~~~gi~y~~~di~~~~~~~~~l~~~~~~~g   55 (120)
T 2kok_A            6 SVTIYGI-----KNCDTMKKARIWLEDHGIDYTFHDYKKEGLDAETLDRFLKTVP   55 (120)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHHTCCEEEEEHHHHCCCHHHHHHHHHHSC
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHcCCcEEEEeeeCCCCCHHHHHHHHHHcC
Confidence            6999999     99999999999999999999999998654   33334444445

>3kp9_A Vkorc1/thioredoxin domain protein; warfarin, disulfide formation, blood coagulation, oxidoreduc blood coagulation,oxidoreductase; HET: U10; 3.60A {Synechococcus SP}

Probab=98.52  E-value=7e-08  Score=84.01  Aligned_cols=84  Identities=8%  Similarity=0.052  Sum_probs=64.1

Q ss_pred             ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeCC
Q psy221           28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFING  105 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~G  105 (205)
                      +.+.+..+.+.+++..|+.|..     +|||+|++++.+|++..-++..+|++.+.  +...++.+..+-+++|++|+||
T Consensus       185 s~~~~~~la~~l~~~~vV~F~A-----~WC~~Ck~l~p~le~lA~~l~~Vd~d~~d~~~~~~~la~~~gI~~vPT~~i~G  259 (291)
T 3kp9_A          185 PSPLAVGLAAHLRQIGGTMYGA-----YWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWIING  259 (291)
T ss_dssp             CCSTHHHHHHHHHHTTCEEEEC-----TTCHHHHHHHHHHGGGGGGSCEEESCSSCSSSCCCHHHHTTTCCSTTEEEETT
T ss_pred             CCHHHHHHHHHhCCCCEEEEEC-----CCCHHHHHHHHHHHHHHHHcCEEEEeecCchhhHHHHHHHcCCcccCeEEECC
Confidence            3345666677777778999999     99999999999999876556677776322  2245666677899999999999


Q ss_pred             eEeechhHHHH
Q psy221          106 EFVGGCDILLK  116 (205)
Q Consensus       106 ~~IGG~del~~  116 (205)
                      +.+.|..+..+
T Consensus       260 ~~~~G~~~~~~  270 (291)
T 3kp9_A          260 RTYTGVRSLEA  270 (291)
T ss_dssp             EEEESCCCHHH
T ss_pred             EEecCCCCHHH
Confidence            99888775444

>3l78_A Regulatory protein SPX; transcription, transcriptional factor, disulfide bond, redox-active center, transcription regulati; 1.90A {Streptococcus mutans} SCOP: c.47.1.12

Probab=98.45  E-value=1.8e-07  Score=70.98  Aligned_cols=50  Identities=22%  Similarity=0.448  Sum_probs=44.0

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCc
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTI   98 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tv   98 (205)
                      |+||++     ++|++|++|+++|+++||+|+++||..++..+++|.++.+...+
T Consensus         2 i~iY~~-----~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~l~~~~~   51 (120)
T 3l78_A            2 VTLFLS-----PSCTSCRKARAWLNRHDVVFQEHNIMTSPLSRDELLKILSYTEN   51 (120)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHHHCSS
T ss_pred             EEEEeC-----CCCHHHHHHHHHHHHcCCCeEEEecccCCCcHHHHHHHHhhcCC
Confidence            789999     99999999999999999999999999988888888877654333

>1s3c_A Arsenate reductase; ARSC, arsenite, oxidoreductase; 1.25A {Escherichia coli} PDB: 1sd9_A 1i9d_A 1j9b_A 1sd8_A 1jzw_A* 1sk1_A* 1sjz_A* 1sk0_A* 1sk2_A 1s3d_A

Probab=98.43  E-value=8.1e-08  Score=75.11  Aligned_cols=53  Identities=15%  Similarity=0.229  Sum_probs=45.1

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCcc
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIP   99 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvP   99 (205)
                      ..|+||+.     ++|++|++++++|+++||+|+++|+..++..+++|.++.+...+|
T Consensus         2 ~~itiY~~-----p~C~~crkak~~L~~~gi~~~~idi~~~~~~~~eL~~~~~~~g~p   54 (141)
T 1s3c_A            2 SNITIYHN-----PASGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKLIADMGIS   54 (141)
T ss_dssp             -CCEEECC-----TTCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHHHHHHTSC
T ss_pred             CcEEEEEC-----CCChHHHHHHHHHHHcCCCEEEEECCCCCccHHHHHHHhcccCCC
Confidence            36899999     999999999999999999999999999887788887776544444

>3rdw_A Putative arsenate reductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 2.20A {Yersinia pestis}

Probab=98.37  E-value=1.8e-07  Score=71.20  Aligned_cols=52  Identities=15%  Similarity=0.247  Sum_probs=44.3

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCC
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPT   97 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~t   97 (205)
                      +..|+||+.     ++|++|++|+++|+++||+|+++||..++..+++|.++.+...
T Consensus         4 M~~i~iY~~-----p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~g   55 (121)
T 3rdw_A            4 MKDVTIYHN-----PRCSKSRETLALVEQQGITPQVVLYLETPPSVDKLKELLQQLG   55 (121)
T ss_dssp             --CCEEECC-----TTCHHHHHHHHHHHTTTCCCEEECTTTSCCCHHHHHHHHHHTT
T ss_pred             CCcEEEEEC-----CCCHHHHHHHHHHHHcCCCcEEEeeccCCCcHHHHHHHHHhcC
Confidence            345999999     9999999999999999999999999999887888887654433

>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0

Probab=98.36  E-value=2.4e-07  Score=70.37  Aligned_cols=48  Identities=15%  Similarity=0.331  Sum_probs=43.0

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      ..|+||+.     ++|++|++|+++|+++||+|+++||..++..+++|.++..
T Consensus         4 M~i~iY~~-----p~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~   51 (120)
T 3gkx_A            4 MKTLFLQY-----PACSTCQKAKKWLIENNIEYTNRLIVDDNPTVEELKAWIP   51 (120)
T ss_dssp             CCCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTTCCCHHHHHHHHH
T ss_pred             cEEEEEEC-----CCChHHHHHHHHHHHcCCceEEEecccCcCCHHHHHHHHH
Confidence            35899999     9999999999999999999999999998877888877653

>3kp8_A Vkorc1/thioredoxin domain protein; blood coagulation, disulfide formation, redox partner, oxidoreductase; 1.66A {Synechococcus SP}

Probab=98.35  E-value=4.6e-07  Score=66.75  Aligned_cols=73  Identities=10%  Similarity=0.050  Sum_probs=55.3

Q ss_pred             HHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHh--HHHHHHHHhCCCCccEEeeCCeEeechhHH
Q psy221           37 EMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES--IRNGIKEYTSWPTIPQVFINGEFVGGCDIL  114 (205)
Q Consensus        37 ~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~--~~~eL~~~~g~~tvPqvFI~G~~IGG~del  114 (205)
                      +......||.|..     +|||+|+++..+|++..-.+..+|++.+..  ...++.+..+-..+|.++|+|+.+.|..+.
T Consensus         9 ~~~~k~~vV~F~A-----~WC~~C~~~~p~~~~~a~~~~~v~~~~~~~~~~~~~l~~~~~V~~~PT~~i~G~~~~G~~~~   83 (106)
T 3kp8_A            9 AHLRQIGGTMYGA-----YWCPHCQDQKELFGAAFDQVPYVECSPNGPGTPQAQECTEAGITSYPTWIINGRTYTGVRSL   83 (106)
T ss_dssp             HHHHHHTCEEEEC-----TTCHHHHHHHHHHGGGGGGSCEEESCTTCTTSCCCHHHHHTTCCSSSEEEETTEEEESCCCH
T ss_pred             HhcCCCEEEEEEC-----CCCHHHHHHHHHHHHHHHhCCEEEEecccccchhHHHHHHcCCeEeCEEEECCEEecCCCCH
Confidence            3334445888988     999999999999998877777888874422  234566667889999999999987776543

>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0

Probab=98.34  E-value=3.5e-07  Score=69.51  Aligned_cols=49  Identities=16%  Similarity=0.253  Sum_probs=43.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCC
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP   96 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~   96 (205)
                      -|+||+.     ++|+.|++++++|+++||+|+++|+..++..+++|.++.+..
T Consensus         4 Mi~iY~~-----~~C~~c~ka~~~L~~~gi~~~~~di~~~~~~~~eL~~~l~~~   52 (120)
T 3fz4_A            4 MLTFYEY-----PKCSTCRRAKAELDDLAWDYDAIDIKKNPPAASLIRNWLENS   52 (120)
T ss_dssp             SEEEEEC-----SSCHHHHHHHHHHHHHTCCEEEEETTTSCCCHHHHHHHHHHS
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCceEEEEeccCchhHHHHHHHHHHc
Confidence            4899999     999999999999999999999999999988888888776443

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=98.29  E-value=5.9e-07  Score=61.40  Aligned_cols=61  Identities=21%  Similarity=0.453  Sum_probs=49.1

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe--Eeec
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE--FVGG  110 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~--~IGG  110 (205)
                      +..|++|..     +|||+|.++...|++.      ++.+..+|++.+++    +.+..|-..+|.+++||+  +.|.
T Consensus         2 m~~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~G~~~~~G~   70 (85)
T 1nho_A            2 VVNIEVFTS-----PTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE----KAIEYGLMAVPAIAINGVVRFVGA   70 (85)
T ss_dssp             CCCEEEESC-----SSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG----GGGGTCSSCSSEEEETTTEEEECS
T ss_pred             eEEEEEEEC-----CCCcchHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHhCCceeeCEEEECCEEEEccC
Confidence            346888988     9999999999988652      68999999988774    334557789999999998  5665

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=98.17  E-value=5.1e-07  Score=61.70  Aligned_cols=61  Identities=23%  Similarity=0.443  Sum_probs=47.0

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe--Eeec
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE--FVGG  110 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~--~IGG  110 (205)
                      +..|++|..     +|||+|.++...|++.      ++.+..+|++.++++    .+..|...+|.++++|+  +.|.
T Consensus         3 ~~~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~~G~~~~~G~   71 (85)
T 1fo5_A            3 KVKIELFTS-----PMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQK----AMEYGIMAVPTIVINGDVEFIGA   71 (85)
T ss_dssp             CEEEEEEEC-----CCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCCT----TTSTTTCCSSEEEETTEEECCSS
T ss_pred             ceEEEEEeC-----CCCCchHHHHHHHHHHHHHcCCceEEEEEECCCCHHH----HHHCCCcccCEEEECCEEeeecC
Confidence            345788888     9999999999888652      578888998877643    34457788999999998  4554

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=98.17  E-value=1.5e-05  Score=66.53  Aligned_cols=72  Identities=13%  Similarity=0.324  Sum_probs=53.9

Q ss_pred             CChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHh----------CCCCeEEEEccCCHhHHHHHHHHhCCC
Q psy221           27 YSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRM----------HDVPYDSHDVLKDESIRNGIKEYTSWP   96 (205)
Q Consensus        27 ~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----------~gV~~~e~DI~~d~~~~~eL~~~~g~~   96 (205)
                      .+++..+.+.++.....|++|..     +|||+|.+++..|++          .+|.+..+|++.+++    +.+..+-.
T Consensus       125 l~~~~~~~~~~~~~~~~vv~F~a-----~wC~~C~~~~p~l~~la~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~V~  195 (243)
T 2hls_A          125 LEDATKEALKSLKGRVHIETIIT-----PSCPYCPYAVLLAHMFAYEAWKQGNPVILSEAVEAYENPD----IADKYGVM  195 (243)
T ss_dssp             CCHHHHHHHHHCCSCEEEEEEEC-----SSCSSHHHHHHHHHHHHHHHHHTTCCCEEEEEEETTTCHH----HHHHTTCC
T ss_pred             CCHHHHHHHHHcCCCcEEEEEEC-----CCCCCcHHHHHHHHHHHHHcccccCCcEEEEEEECccCHH----HHHHcCCe
Confidence            45555555554444445677989     999999999999865          468888999988764    33445778


Q ss_pred             CccEEeeCCeE
Q psy221           97 TIPQVFINGEF  107 (205)
Q Consensus        97 tvPqvFI~G~~  107 (205)
                      ++|++++||+.
T Consensus       196 ~vPt~~i~G~~  206 (243)
T 2hls_A          196 SVPSIAINGYL  206 (243)
T ss_dssp             SSSEEEETTEE
T ss_pred             eeCeEEECCEE
Confidence            99999999984

>3f0i_A Arsenate reductase; structural genomics, IDP01300, vibrio CH center for structural genomics of infectious diseases, CSGI oxidoreductase; HET: MSE; 1.88A {Vibrio cholerae}

Probab=98.15  E-value=4.5e-07  Score=68.76  Aligned_cols=47  Identities=17%  Similarity=0.342  Sum_probs=41.6

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      .|+||+.     ++|+.|++++++|+++|++|+++|+..++..+++|.++..
T Consensus         5 ~i~iY~~-----p~C~~c~ka~~~L~~~gi~~~~~di~~~~~t~~eL~~~l~   51 (119)
T 3f0i_A            5 SVVIYHN-----PKCSKSRETLALLENQGIAPQVIKYLETSPSVEELKRLYQ   51 (119)
T ss_dssp             CCEEECC-----TTCHHHHHHHHHHHHTTCCCEEECHHHHCCCHHHHHHHHH
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHcCCceEEEEeccCcCcHHHHHHHHH
Confidence            5899999     9999999999999999999999999987776777776643

>3ir4_A Glutaredoxin 2; glutathione, IDP00895, structural genomics, for structural genomics of infectious diseases, csgid, oxidoreductase; HET: MSE GSH; 1.20A {Salmonella enterica subsp} PDB: 1g7o_A

Probab=97.94  E-value=2.7e-05  Score=62.65  Aligned_cols=71  Identities=8%  Similarity=0.225  Sum_probs=58.8

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEe-eCCeEeechhHHHHHHh
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF-INGEFVGGCDILLKLHQ  119 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF-I~G~~IGG~del~~l~e  119 (205)
                      +.+.||..     +.||+|.+++-+|+..|++|+.++|+.....  ...++....++|.+. .||..+.....|.+..+
T Consensus         2 ~~~~Ly~~-----~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~--~~~~~~p~~~vP~l~~~~g~~l~eS~aI~~yL~   73 (218)
T 3ir4_A            2 NAMKLYIY-----DHCPFCVKARMIFGLKNIPVELNVLQNDDEA--TPTRMIGQKMVPILQKDDSRYLPESMDIVHYVD   73 (218)
T ss_dssp             CCCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCCH--HHHHHHSSSCSCEEECTTSCEEECHHHHHHHHH
T ss_pred             CeEEEEcC-----CCCchHHHHHHHHHHcCCceEEEECCCcchh--hhhhcCCCceeeeEEEeCCeEeeCHHHHHHHHH
Confidence            46789999     9999999999999999999999998765432  235677889999999 88999988887776544

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=97.91  E-value=2.2e-05  Score=57.45  Aligned_cols=65  Identities=20%  Similarity=0.402  Sum_probs=46.4

Q ss_pred             HHHHhcC-CcE-EEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CC
Q psy221           35 IDEMVKK-SKV-VVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NG  105 (205)
Q Consensus        35 l~~~~~~-~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G  105 (205)
                      ++++++. ..+ +.|..     +||++|+++...|++.     ++.+..+|++.+++    +.+..+-..+|.+++  +|
T Consensus        23 ~~~~~~~~k~vvv~F~a-----~wC~~C~~~~p~l~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G   93 (114)
T 2oe3_A           23 FRNLIKQNDKLVIDFYA-----TWCGPCKMMQPHLTKLIQAYPDVRFVKCDVDESPD----IAKECEVTAMPTFVLGKDG   93 (114)
T ss_dssp             HHHHHHHCSEEEEEEEC-----TTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSBSEEEEEETT
T ss_pred             HHHHHhCCCEEEEEEEC-----CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHCCCCcccEEEEEeCC
Confidence            4444443 344 44666     9999999999888654     58888999887764    444457778999877  88


Q ss_pred             eEe
Q psy221          106 EFV  108 (205)
Q Consensus       106 ~~I  108 (205)
                      +.+
T Consensus        94 ~~~   96 (114)
T 2oe3_A           94 QLI   96 (114)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            764

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=97.87  E-value=7.4e-05  Score=53.96  Aligned_cols=65  Identities=17%  Similarity=0.297  Sum_probs=47.3

Q ss_pred             HHHhcCCc-EEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeE
Q psy221           36 DEMVKKSK-VVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEF  107 (205)
Q Consensus        36 ~~~~~~~~-VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~  107 (205)
                      +.+.+..+ ++.|..     +||++|..+...|+++     ++.+..+|++.+++    +.+..+-..+|.+++  +|+.
T Consensus        14 ~~~~~~~~~vv~f~a-----~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~   84 (110)
T 2l6c_A           14 AHFEGLSDAIVFFHK-----NLCPHCKNMEKVLDKFGARAPQVAISSVDSEARPE----LMKELGFERVPTLVFIRDGKV   84 (110)
T ss_dssp             HHHTTCSEEEEEEEC-----SSCSTHHHHHHHHHHHHTTCTTSCEEEEEGGGCHH----HHHHTTCCSSCEEEEEESSSE
T ss_pred             HHHHcCCCEEEEEEC-----CCCHhHHHHHHHHHHHHHHCCCcEEEEEcCcCCHH----HHHHcCCcccCEEEEEECCEE
Confidence            33444444 455666     9999999999998754     46788888876654    445567789999988  9987


Q ss_pred             ee
Q psy221          108 VG  109 (205)
Q Consensus       108 IG  109 (205)
                      +.
T Consensus        85 v~   86 (110)
T 2l6c_A           85 AK   86 (110)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=97.86  E-value=0.00024  Score=50.54  Aligned_cols=71  Identities=17%  Similarity=0.238  Sum_probs=47.7

Q ss_pred             HHHHHHHHHh--cCCcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221           30 DVQKSIDEMV--KKSKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV  101 (205)
Q Consensus        30 ~~~~~l~~~~--~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv  101 (205)
                      ++++.+.+..  ...-++.|..     +||++|......|++.      ++.+..+|++.++++    .+..+-..+|.+
T Consensus        12 ~~~~~l~~~~~~~~~~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~   82 (112)
T 1ep7_A           12 AWDAQLAKGKEEHKPIVVDFTA-----TWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAV----AEAAGITAMPTF   82 (112)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHH----HHHHTCCBSSEE
T ss_pred             HHHHHHHhhcccCCeEEEEEEC-----CCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCchHHH----HHHcCCCcccEE
Confidence            4445554433  3344555666     9999999998888653      477788888776644    344467789998


Q ss_pred             ee--CCeEee
Q psy221          102 FI--NGEFVG  109 (205)
Q Consensus       102 FI--~G~~IG  109 (205)
                      ++  +|+.+.
T Consensus        83 ~~~~~G~~~~   92 (112)
T 1ep7_A           83 HVYKDGVKAD   92 (112)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEECCeEEE
Confidence            77  887643

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=97.82  E-value=0.00029  Score=49.42  Aligned_cols=70  Identities=21%  Similarity=0.300  Sum_probs=48.1

Q ss_pred             HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--
Q psy221           31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--  103 (205)
Q Consensus        31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--  103 (205)
                      .++.+.+.-...-++.|..     +||++|++....|++.     ++.+..+|++.+++    +.+..+-..+|.+++  
T Consensus        11 ~~~~l~~~~~~~~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~   81 (105)
T 3m9j_A           11 FQEALDAAGDKLVVVDFSA-----TWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQD----VASESEVKSMPTFQFFK   81 (105)
T ss_dssp             HHHHHHHTTTSCEEEEEEC-----TTCHHHHHHHHHHHHHHHHSTTSEEEEEETTTCHH----HHHHTTCCBSSEEEEEE
T ss_pred             HHHHHHhcCCCeEEEEEEC-----CCChhhHHHHHHHHHHHHHccCeEEEEEEhhhhHH----HHHHcCCCcCcEEEEEE
Confidence            3444433322334455666     9999999999998763     67788888887764    344457788999877  


Q ss_pred             CCeEee
Q psy221          104 NGEFVG  109 (205)
Q Consensus       104 ~G~~IG  109 (205)
                      +|+.++
T Consensus        82 ~g~~~~   87 (105)
T 3m9j_A           82 KGQKVG   87 (105)
T ss_dssp             TTEEEE
T ss_pred             CCeEEE
Confidence            887654

>2r4v_A XAP121, chloride intracellular channel protein 2; chloride intracellular channels, CLIC2, pore-forming protein ryanodine receptor, chloride channel; HET: GSH; 1.85A {Homo sapiens} PDB: 2r5g_A 2per_A*

Probab=97.80  E-value=6.5e-05  Score=62.09  Aligned_cols=72  Identities=15%  Similarity=0.229  Sum_probs=52.9

Q ss_pred             CCcEEEE--------EeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221           41 KSKVVVF--------MKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        41 ~~~VvlY--------sk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d  112 (205)
                      +..++||        +.     +.||+|.+++-+|+..||+|+.+.|+.. ...+++.++....++|.+..||..|....
T Consensus        11 ~~~i~ly~~~~~~~~~~-----~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~ES~   84 (247)
T 2r4v_A           11 DPEIELFVKAGSDGESI-----GNCPFCQRLFMILWLKGVKFNVTTVDMT-RKPEELKDLAPGTNPPFLVYNKELKTDFI   84 (247)
T ss_dssp             CCCEEEEEEBCTTSSSB-----CSCHHHHHHHHHHHHHTCCCEEEEECCC-----------CCSSSCEEEETTEEECCHH
T ss_pred             CCCEEEEEecCcccccC-----CCChhHHHHHHHHHHcCCCcEEEEcCcc-cchHHHHHhCCCCCCCEEEECCEeccCHH
Confidence            4569999        55     8999999999999999999999988754 22345666667779999999999898777


Q ss_pred             HHHHHH
Q psy221          113 ILLKLH  118 (205)
Q Consensus       113 el~~l~  118 (205)
                      .|.+..
T Consensus        85 aI~~YL   90 (247)
T 2r4v_A           85 KIEEFL   90 (247)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766653

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=97.80  E-value=0.00012  Score=52.59  Aligned_cols=71  Identities=15%  Similarity=0.246  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHh--cCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221           29 TDVQKSIDEMV--KKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV  101 (205)
Q Consensus        29 ~~~~~~l~~~~--~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv  101 (205)
                      ++.++.+.+..  ...-|+.|..     +||++|.+....|+++     ++.+..+|++.+++    +.+..+-..+|.+
T Consensus        15 ~~~~~~~~~~~~~~~~~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~   85 (118)
T 2vm1_A           15 QEFDTHMANGKDTGKLVIIDFTA-----SWCGPCRVIAPVFAEYAKKFPGAIFLKVDVDELKD----VAEAYNVEAMPTF   85 (118)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTTCCSBSEE
T ss_pred             HHHHHHHHhcccCCCEEEEEEEC-----CCCHhHHHHhHHHHHHHHHCCCcEEEEEEcccCHH----HHHHcCCCcCcEE
Confidence            44555555543  2334455666     9999999998888653     57788888877654    4445577789998


Q ss_pred             ee--CCeEe
Q psy221          102 FI--NGEFV  108 (205)
Q Consensus       102 FI--~G~~I  108 (205)
                      ++  +|+.+
T Consensus        86 ~~~~~g~~~   94 (118)
T 2vm1_A           86 LFIKDGEKV   94 (118)
T ss_dssp             EEEETTEEE
T ss_pred             EEEeCCeEE
Confidence            77  88764

>2ahe_A Chloride intracellular channel protein 4; glutathione-S-transferase superfamily, CLIC4, NCC27, chloride ION channel, metal transport; 1.80A {Homo sapiens} PDB: 2d2z_A

Probab=97.78  E-value=6.3e-05  Score=63.35  Aligned_cols=83  Identities=17%  Similarity=0.234  Sum_probs=59.2

Q ss_pred             HHHhcCCcEEEEEeeCC---CCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechh
Q psy221           36 DEMVKKSKVVVFMKGVP---EAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        36 ~~~~~~~~VvlYsk~~~---~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d  112 (205)
                      ++.-++..++||.+...   ....||+|.+++-+|+..||+|+.+.|+... ..+++.++....++|.|..||..|....
T Consensus        11 ~~~~~~~~i~ly~~~~~~~~~~~~~p~~~rv~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP~gkVPvL~~~g~~l~ES~   89 (267)
T 2ahe_A           11 KEEDKEPLIELFVKAGSDGESIGNCPFSQRLFMILWLKGVVFSVTTVDLKR-KPADLQNLAPGTHPPFITFNSEVKTDVN   89 (267)
T ss_dssp             -----CCCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHSTTCCSCEEEETTEEECCHH
T ss_pred             cccccCCCEEEEEecCCCccCCCCCchHHHHHHHHHHcCCCCEEEEeCccc-ChHHHHHhCCCCCCCEEEECCEEecCHH
Confidence            44445678999943211   1189999999999999999999998886532 1245666777789999999999888877


Q ss_pred             HHHHHHh
Q psy221          113 ILLKLHQ  119 (205)
Q Consensus       113 el~~l~e  119 (205)
                      .|.+..+
T Consensus        90 aI~~YL~   96 (267)
T 2ahe_A           90 KIEEFLE   96 (267)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766543

>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula elliptica} PDB: 3qaw_A*

Probab=97.76  E-value=0.00012  Score=60.07  Aligned_cols=81  Identities=16%  Similarity=0.126  Sum_probs=60.1

Q ss_pred             HHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeec
Q psy221           33 KSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGG  110 (205)
Q Consensus        33 ~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG  110 (205)
                      .....+..+.+++||..     +.||+|.+++-+|+..||+|+.+.|+..  .....++.++....++|.+..||..|..
T Consensus        16 ~~~~~Ms~~~~~~Ly~~-----~~sp~~~rv~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~~~g~~l~e   90 (243)
T 3qav_A           16 PRGSHMATTSKPFVYWG-----SGSPPCWKVLLVLQEKKIDYDEKIISFSKKEHKSEEILELNPRGQVPTFTDGDVVVNE   90 (243)
T ss_dssp             ---------CCCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEEETTEEECS
T ss_pred             ccchhccccCccEEEeC-----CCCcchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCEEEECCEEEec
Confidence            33445556678999999     9999999999999999999999888643  3344677777777899999999998887


Q ss_pred             hhHHHHHH
Q psy221          111 CDILLKLH  118 (205)
Q Consensus       111 ~del~~l~  118 (205)
                      ...|.+..
T Consensus        91 S~aI~~YL   98 (243)
T 3qav_A           91 STAICMYL   98 (243)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666643

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=97.73  E-value=0.00034  Score=50.94  Aligned_cols=60  Identities=22%  Similarity=0.294  Sum_probs=43.3

Q ss_pred             CCcEE-EEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           41 KSKVV-VFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        41 ~~~Vv-lYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ...|+ .|..     +||++|+++...|+++     ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+.
T Consensus        31 ~k~vlv~F~a-----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~~   98 (116)
T 3qfa_C           31 DKLVVVDFSA-----TWCGPSKMIKPFFHSLSEKYSNVIFLEVDVDDCQD----VASECEVKSMPTFQFFKKGQKVG   98 (116)
T ss_dssp             TSCEEEEEEC-----TTCHHHHHHHHHHHHHHTTCTTSEEEEEETTTTHH----HHHHTTCCSSSEEEEESSSSEEE
T ss_pred             CCEEEEEEEC-----CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHcCCccccEEEEEeCCeEEE
Confidence            34444 4666     9999999999998764     46677888877664    444557788999877  776543

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=97.73  E-value=0.00033  Score=50.37  Aligned_cols=69  Identities=19%  Similarity=0.369  Sum_probs=49.0

Q ss_pred             HHHHHHHhcCC-cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-
Q psy221           32 QKSIDEMVKKS-KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-  103 (205)
Q Consensus        32 ~~~l~~~~~~~-~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-  103 (205)
                      .+.++++++.+ .|+| |..     +||++|++....|++.     ++.+..+|++.+++    +.+..+-..+|.+++ 
T Consensus        14 ~~~f~~~~~~~k~vlv~f~a-----~wC~~C~~~~p~l~~l~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~   84 (109)
T 3f3q_A           14 ASEFDSAIAQDKLVVVDFYA-----TWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGD----VAQKNEVSAMPTLLLF   84 (109)
T ss_dssp             HHHHHHHTTSSSCEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHhcCCEEEEEEEC-----CcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHcCCCccCEEEEE
Confidence            33456666543 4444 666     9999999999888653     57788888887765    444567788999877 


Q ss_pred             -CCeEee
Q psy221          104 -NGEFVG  109 (205)
Q Consensus       104 -~G~~IG  109 (205)
                       +|+.+.
T Consensus        85 ~~G~~~~   91 (109)
T 3f3q_A           85 KNGKEVA   91 (109)
T ss_dssp             ETTEEEE
T ss_pred             ECCEEEE
Confidence             887655

>2cz2_A Maleylacetoacetate isomerase; structural genomics, GST, GSTZ1-1, NPPSFA, national project protein structural and functional analyses; HET: GSH; 1.40A {Mus musculus} PDB: 2cz3_A 1fw1_A*

Probab=97.70  E-value=0.00019  Score=57.91  Aligned_cols=73  Identities=12%  Similarity=0.160  Sum_probs=59.5

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH----hHHHHHHHHhCCCCccEEeeCCeEeechhHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE----SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~----~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~  116 (205)
                      +.+++||..     +.||+|.+++-+|+..||+|+.+.|+...    ....++.++....++|.+..||..|.....|.+
T Consensus        10 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~e~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~   84 (223)
T 2cz2_A           10 AGKPILYSY-----FRSSCSWRVRIALALKGIDYEIVPINLIKDGGQQFTEEFQTLNPMKQVPALKIDGITIVQSLAIME   84 (223)
T ss_dssp             -CCCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSSGGGCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHH
T ss_pred             cCceEEEec-----CCCChHHHHHHHHHhcCCCCeEEEeecccCchhhcCHHHhccCCCCCCCEEEECCEEEeeHHHHHH
Confidence            356899998     89999999999999999999999987543    234566777777899999999998888777666


Q ss_pred             HH
Q psy221          117 LH  118 (205)
Q Consensus       117 l~  118 (205)
                      ..
T Consensus        85 yL   86 (223)
T 2cz2_A           85 YL   86 (223)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>4hoj_A REGF protein; GST, glutathione S-transferase, enzyme function initiative, structural genomics, transferase; HET: GSH; 1.40A {Neisseria gonorrhoeae}

Probab=97.68  E-value=0.00013  Score=58.40  Aligned_cols=69  Identities=10%  Similarity=0.219  Sum_probs=55.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++||+.     +.||+|.+|+-+|+..||+|+.+.|+.... .+++.++....++|.+..||..|-....|.+..
T Consensus         4 m~LY~~-----~~sP~~~rvr~~L~e~gi~~e~~~v~~~~~-~~~~~~~nP~g~vPvL~~~~~~l~ES~aI~~yL   72 (210)
T 4hoj_A            4 MTLYSG-----ITCPFSHRCRFVLYEKGMDFEIKDIDIYNK-PEDLAVMNPYNQVPVLVERDLVLHESNIINEYI   72 (210)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             EEEecC-----CCChHHHHHHHHHHHcCCCCEEEEeCCCCC-CHHHHHHCCCCCCcEEEECCEEEeccHHHHHHH
Confidence            578988     999999999999999999999998864321 245677777789999999999888776666543

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=97.68  E-value=0.00032  Score=50.68  Aligned_cols=72  Identities=25%  Similarity=0.366  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-
Q psy221           29 TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-  103 (205)
Q Consensus        29 ~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-  103 (205)
                      ++.++.+.+.-...-++.|..     +||++|+++...|++.    ++.+..+|++.+++    +.+..+-..+|.+++ 
T Consensus        22 ~~~~~~l~~~~~~~~vv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~   92 (117)
T 2xc2_A           22 GDLESLLEQHKNKLVVVDFFA-----TWCGPCKTIAPLFKELSEKYDAIFVKVDVDKLEE----TARKYNISAMPTFIAI   92 (117)
T ss_dssp             THHHHHHHHTTTSCEEEEEEC-----TTCHHHHHHHHHHHHHHTTSSSEEEEEETTTSHH----HHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHHhCCCCEEEEEEEC-----CCCHhHHHHhHHHHHHHHHcCcEEEEEECCccHH----HHHHcCCCccceEEEE
Confidence            455555554323334455666     9999999999888654    67777888876654    444557788999877 


Q ss_pred             -CCeEee
Q psy221          104 -NGEFVG  109 (205)
Q Consensus       104 -~G~~IG  109 (205)
                       +|+.+.
T Consensus        93 ~~G~~~~   99 (117)
T 2xc2_A           93 KNGEKVG   99 (117)
T ss_dssp             ETTEEEE
T ss_pred             eCCcEEE
Confidence             887653

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.0003  Score=50.26  Aligned_cols=59  Identities=20%  Similarity=0.308  Sum_probs=41.3

Q ss_pred             CcEE-EEEeeCCCCCCChHHHHHHHHHHh-------CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           42 SKVV-VFMKGVPEAPRCGFSNAVVQILRM-------HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        42 ~~Vv-lYsk~~~~~~~Cp~C~~ak~lL~~-------~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      .+++ .|..     +||++|+.+...|++       .++.+..+|++.+++    +.+..+-..+|.+++  +|+.+.
T Consensus        22 ~~~~v~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   90 (112)
T 3d6i_A           22 KLIVLYFHT-----SWAEPCKALKQVFEAISNEPSNSNVSFLSIDADENSE----ISELFEISAVPYFIIIHKGTILK   90 (112)
T ss_dssp             CCEEEEEEC-----CC--CHHHHHHHHHHHHHCGGGTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             CEEEEEEEC-----CCCHHHHHHHHHHHHHHHhcCCCCEEEEEEecccCHH----HHHHcCCCcccEEEEEECCEEEE
Confidence            4454 4666     999999999988863       257788888887764    444557788999876  898654

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=97.66  E-value=0.00032  Score=48.96  Aligned_cols=59  Identities=22%  Similarity=0.362  Sum_probs=43.5

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ..+++| |..     +|||+|..+...|++.     ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        19 ~~~~~v~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~   85 (104)
T 2vim_A           19 GRLIVVDFFA-----QWCGPCRNIAPKVEALAKEIPEVEFAKVDVDQNEE----AAAKYSVTAMPTFVFIKDGKEV   85 (104)
T ss_dssp             TSCEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCeEEEEEEC-----CCCHHHHHhhHHHHHHHHHCCCCEEEEEeccCCHH----HHHHcCCccccEEEEEeCCcEE
Confidence            344544 666     9999999999888653     68888889887764    344456778999877  88764

>1oyj_A Glutathione S-transferase; herbicide detoxification; HET: GSH; 1.95A {Oryza sativa} SCOP: a.45.1.1 c.47.1.5

Probab=97.64  E-value=0.0002  Score=58.17  Aligned_cols=73  Identities=10%  Similarity=0.096  Sum_probs=58.0

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC-CCccEEeeCCeEeechhHHHHHH
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW-PTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~-~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++.+++||..     +.||+|.+++-+|+..||+|+.+.++.. ...+++.+.... .++|.+..||..|.....|.+..
T Consensus         3 ~~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~yL   76 (231)
T 1oyj_A            3 EEKELVLLDF-----WVSPFGQRCRIAMAEKGLEFEYREEDLG-NKSDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYL   76 (231)
T ss_dssp             CSCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTT-SCCHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCCceEEEeC-----CCChHHHHHHHHHHHCCCCCeEEecCcc-cCCHHHHhhCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            4568999998     9999999999999999999999988653 122355556555 68999999999888877766653

>3fy7_A Chloride intracellular channel protein 3; GST, glutathione, CLIC, chloride channel, ION transport, ionic channel, nucleus, transport, gated channel; 1.95A {Homo sapiens} PDB: 3kjy_A

Probab=97.63  E-value=0.00019  Score=59.41  Aligned_cols=77  Identities=13%  Similarity=0.280  Sum_probs=52.1

Q ss_pred             CCcEEEEEeeCCC--C-CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           41 KSKVVVFMKGVPE--A-PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        41 ~~~VvlYsk~~~~--~-~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      ...|.||.+.-.+  . +.||+|.+++-+|+..||+|+.+.|+.. ...+++.++....++|.+..||..|.....|.+.
T Consensus        23 ~~~i~l~~ka~~~~~s~~~sP~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~VPvL~~dg~~l~ES~aI~~Y  101 (250)
T 3fy7_A           23 ETKLQLFVKASEDGESVGHCPSCQRLFMVLLLKGVPFTLTTVDTR-RSPDVLKDFAPGSQLPILLYDSDAKTDTLQIEDF  101 (250)
T ss_dssp             --CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEEC---------------CCSCEEEETTEEECCHHHHHHH
T ss_pred             CCCceEEEEeCCCCCCCCCChHHHHHHHHHHHcCCccEEEECCCc-cChHHHHhhCCCCCCCEEEECCEEecCHHHHHHH
Confidence            4579999985433  2 7899999999999999999999888754 2334666666777999999999988887776665


Q ss_pred             H
Q psy221          118 H  118 (205)
Q Consensus       118 ~  118 (205)
                      .
T Consensus       102 L  102 (250)
T 3fy7_A          102 L  102 (250)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=97.63  E-value=0.00042  Score=49.14  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=47.4

Q ss_pred             HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-
Q psy221           30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-  103 (205)
Q Consensus        30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-  103 (205)
                      +.++.+.+.-...-++.|..     +||++|+++...|++.     ++.+..+|++.+++    +.+..+-..+|.+++ 
T Consensus        11 ~~~~~~~~~~~~~v~v~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~   81 (107)
T 1gh2_A           11 DFQPELSGAGSRLAVVKFTM-----RGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQG----TAATNNISATPTFQFF   81 (107)
T ss_dssp             GHHHHHHHTTTSCEEEEEEC-----SSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHhCCCCEEEEEEEC-----CCChhhHHHHHHHHHHHHHCCCcEEEEEECccCHH----HHHhcCCCcccEEEEE
Confidence            34444433112233455666     9999999999888653     57888899887764    444557778998755 


Q ss_pred             -CCeEee
Q psy221          104 -NGEFVG  109 (205)
Q Consensus       104 -~G~~IG  109 (205)
                       +|+.+.
T Consensus        82 ~~G~~~~   88 (107)
T 1gh2_A           82 RNKVRID   88 (107)
T ss_dssp             ETTEEEE
T ss_pred             ECCeEEE
Confidence             887554

>1k0m_A CLIC1, NCC27, chloride intracellular channel protein 1; glutathione-S-tranferase superfamily, chloride ION channel, metal transport; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1k0n_A* 1k0o_A 1rk4_A 3uvh_A 3o3t_A 3p90_A 3qr6_A 3p8w_A 3tgz_A 3ma4_A 3swl_A

Probab=97.63  E-value=0.00019  Score=59.13  Aligned_cols=77  Identities=16%  Similarity=0.278  Sum_probs=58.0

Q ss_pred             CCcEEEEEeeCC-CC--CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           41 KSKVVVFMKGVP-EA--PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        41 ~~~VvlYsk~~~-~~--~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +..+++|.+.-. +.  ..||+|.+++-+|...||+|+.+.|+.. ...+++.++....+||.+..||..|.....|.+.
T Consensus         5 ~~~~~Ly~~~~~~g~~~~~sp~~~rv~~~L~~~gi~ye~~~v~~~-~~~~~~~~~nP~g~VPvL~~~g~~l~eS~aI~~y   83 (241)
T 1k0m_A            5 QPQVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTK-RRTETVQKLCPGGELPFLLYGTEVHTDTNKIEEF   83 (241)
T ss_dssp             -CCEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTT-SCCHHHHHHCTTCCSSEEEETTEEEECHHHHHHH
T ss_pred             CCceEEEeecCCCCCCCCCCHHHHHHHHHHHHcCCccEEEEcCCc-ccHHHHHHhCCCCCCCEEEECCEEecCHHHHHHH
Confidence            557899987311 11  4899999999999999999999888653 2234566666677999999999888877766665


Q ss_pred             H
Q psy221          118 H  118 (205)
Q Consensus       118 ~  118 (205)
                      .
T Consensus        84 L   84 (241)
T 1k0m_A           84 L   84 (241)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1yy7_A SSPA, stringent starvation protein A; GST fold, transcription; HET: CIT; 2.02A {Yersinia pestis}

Probab=97.63  E-value=0.00024  Score=56.89  Aligned_cols=73  Identities=18%  Similarity=0.271  Sum_probs=58.6

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      ...++||..     +.||+|.+++-+|+..||+|+.+.++... ..+++.++....++|.+..||..|.....|.+..+
T Consensus         8 ~~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   80 (213)
T 1yy7_A            8 RSVMTLFSG-----PTDIFSHQVRIVLAEKGVSVEIEQVEADN-LPQDLIDLNPYRTVPTLVDRELTLYESRIIMEYLD   80 (213)
T ss_dssp             SSSEEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEECCTTS-CCHHHHHHCTTCCSSEEEETTEEEESHHHHHHHHH
T ss_pred             CCceEEEcC-----CCChhHHHHHHHHHHcCCCCeEEeCCccc-CcHHHHHHCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            346899998     89999999999999999999999987531 23456666667799999999998888777666533

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=97.62  E-value=0.00083  Score=48.13  Aligned_cols=65  Identities=20%  Similarity=0.366  Sum_probs=45.7

Q ss_pred             HHHHhc-CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CC
Q psy221           35 IDEMVK-KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NG  105 (205)
Q Consensus        35 l~~~~~-~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G  105 (205)
                      ++++++ ...++| |..     +||++|.++...|++.     ++.+..+|++.+++    +.+..+-..+|.+++  +|
T Consensus        19 f~~~~~~~k~vlv~f~a-----~~C~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G   89 (112)
T 1syr_A           19 FDSIISQNELVIVDFFA-----EWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE----VTEKENITSMPTFKVYKNG   89 (112)
T ss_dssp             HHHHHHHCSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHH----HHHHTTCCSSSEEEEEETT
T ss_pred             HHHHHccCCeEEEEEEC-----CCCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCHH----HHHHcCCCcccEEEEEECC
Confidence            334443 344444 666     9999999999888653     67888888887764    444557788998877  88


Q ss_pred             eEe
Q psy221          106 EFV  108 (205)
Q Consensus       106 ~~I  108 (205)
                      +.+
T Consensus        90 ~~~   92 (112)
T 1syr_A           90 SSV   92 (112)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            764

>3lyk_A Stringent starvation protein A homolog; structural genomics, GST-superfamily, SSPA, PSI-2, protein structure initiative; 2.10A {Haemophilus influenzae}

Probab=97.62  E-value=0.00021  Score=57.34  Aligned_cols=70  Identities=14%  Similarity=0.236  Sum_probs=58.1

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .++||..     +.||+|.+++-+|+..||+|+.+.|+... ..+++.++....++|.+..||..|.....|.+..
T Consensus         6 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   75 (216)
T 3lyk_A            6 VMTLFSN-----KDDIYCHQVKIVLAEKGVLYENAEVDLQA-LPEDLMELNPYGTVPTLVDRDLVLFNSRIIMEYL   75 (216)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTS-CCHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEEEeC-----CCChhHHHHHHHHHHcCCCcEEEeCCccc-CcHHHHhhCCCCCcCeEEECCeEecCHHHHHHHH
Confidence            4889998     99999999999999999999999987542 2346667777789999999999988877766653

>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, oxidor thioredoxin fold, structural genomics, PSI-2; HET: MSE; 1.50A {Staphylococcus aureus subsp}

Probab=97.61  E-value=0.00063  Score=51.16  Aligned_cols=72  Identities=21%  Similarity=0.285  Sum_probs=57.8

Q ss_pred             HHHHhc-CCcEEEEEeeCCCCCCChHHHHHHHHHHhC----CCCeEEEEccCCHhHHHHHHHHhCCC-CccEEee--CCe
Q psy221           35 IDEMVK-KSKVVVFMKGVPEAPRCGFSNAVVQILRMH----DVPYDSHDVLKDESIRNGIKEYTSWP-TIPQVFI--NGE  106 (205)
Q Consensus        35 l~~~~~-~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~----gV~~~e~DI~~d~~~~~eL~~~~g~~-tvPqvFI--~G~  106 (205)
                      ++++++ ..+|+|+--+    .||+.|+.+...|+++    .+++-.+||++++++-.++.+..|-. ..||+++  ||+
T Consensus        17 f~~ii~~~~~vvi~kha----twCgpc~~~~~~~e~~~~~~~v~~~~vdVde~r~~Sn~IA~~~~V~h~sPq~il~k~G~   92 (112)
T 3iv4_A           17 FEQVIEENKYVFVLKHS----ETCPISANAYDQFNKFLYERDMDGYYLIVQQERDLSDYIAKKTNVKHESPQAFYFVNGE   92 (112)
T ss_dssp             HHHHHHHCSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCCCSSEEEEEETTE
T ss_pred             HHHHHhcCCCEEEEEEC----CcCHhHHHHHHHHHHHhccCCceEEEEEeecCchhhHHHHHHhCCccCCCeEEEEECCE
Confidence            444554 5677776654    7999999999888765    79999999999988888899999988 5999965  898


Q ss_pred             Eeec
Q psy221          107 FVGG  110 (205)
Q Consensus       107 ~IGG  110 (205)
                      .+.-
T Consensus        93 ~v~~   96 (112)
T 3iv4_A           93 MVWN   96 (112)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>4g10_A Glutathione S-transferase homolog; thioredoxin fold; HET: MSE GSH; 1.20A {Sphingomonas paucimobilis}

Probab=97.61  E-value=0.00013  Score=61.16  Aligned_cols=74  Identities=15%  Similarity=0.305  Sum_probs=55.9

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHH-HHHHhCCCCccEEee-CCeEeechhHHHHH
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNG-IKEYTSWPTIPQVFI-NGEFVGGCDILLKL  117 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~e-L~~~~g~~tvPqvFI-~G~~IGG~del~~l  117 (205)
                      +...++||..     +.||+|.+|+-+|+..||+|+.++|+....--+. +.++....+||.+.+ ||..|-....|.+.
T Consensus         3 ~p~~~~LY~~-----~~sP~~~rv~i~L~e~gi~ye~~~vd~~~~~pe~~~~~~nP~g~VPvL~~d~g~~l~ES~aI~~Y   77 (265)
T 4g10_A            3 EPQELTIYHI-----PGCPFSERVEIMLELKGLRMKDVEIDISKPRPDWLLAKTGGTTALPLLDVENGESLKESMVILRY   77 (265)
T ss_dssp             CCCCCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTSCCCHHHHHHHTSCCCSCEEECTTSCEEECHHHHHHH
T ss_pred             CCCceEEEec-----CCChHHHHHHHHHHHhCCCCEEEEeCCCCCCcHHHHHhcCCCCccceEEECCCeEEeccHHHHHH
Confidence            4567999999     9999999999999999999998888643211122 345667789999987 67777766666554


Q ss_pred             H
Q psy221          118 H  118 (205)
Q Consensus       118 ~  118 (205)
                      .
T Consensus        78 L   78 (265)
T 4g10_A           78 L   78 (265)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1axd_A Glutathione S-transferase I; transferase, herbicide detoxification, transferase-transfera inhibitor complex; HET: GGL CYW; 2.50A {Zea mays} SCOP: a.45.1.1 c.47.1.5 PDB: 1bye_A*

Probab=97.61  E-value=0.00016  Score=57.12  Aligned_cols=71  Identities=6%  Similarity=-0.048  Sum_probs=58.1

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++.||..     +.||+|.+++-+|+..||+|+.+.++...  ....++.+.....++|.+..||..|.....|.+..
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   74 (209)
T 1axd_A            2 PMKLYGA-----VMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKYA   74 (209)
T ss_dssp             CEEEESC-----TTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEeC-----CCCchHHHHHHHHHhcCCCCEEEeccccccCcCChHHHHhCcCCCCCeEEECCEEEecHHHHHHHH
Confidence            4789988     99999999999999999999999887542  23456666666779999999999998887776653

>3lyp_A Stringent starvation protein A; structural genomics, GST-superfamily, SSPA, stringent starva protein A homolog, PSI-2; 1.60A {Pseudomonas fluorescens} PDB: 3mdk_A

Probab=97.60  E-value=0.00014  Score=58.28  Aligned_cols=70  Identities=11%  Similarity=0.173  Sum_probs=56.3

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +++||..     +.||+|.+++-+|+..||+|+.+.|+.. ...+++.++....++|.+..||..|.....|.+..
T Consensus         8 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   77 (215)
T 3lyp_A            8 RLACYSD-----PADHYSHRVRIVLAEKGVSAEIISVEAG-RQPPKLIEVNPYGSLPTLVDRDLALWESTVVMEYL   77 (215)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECC----CCHHHHHHCTTCCSSEEECC-CEEESHHHHHHHH
T ss_pred             CeEEEeC-----CCCchHHHHHHHHHHCCCCcEEEecCcc-cccHHHHHHCCCCCcCeEEECCEEeecHHHHHHHH
Confidence            7899999     9999999999999999999999998754 23356677777889999999998888877766543

>3bby_A Uncharacterized GST-like protein YFCF; NP_416804.1, glutathione S-transferase, N-terminal domain, S genomics; 1.85A {Escherichia coli}

Probab=97.60  E-value=0.00023  Score=56.82  Aligned_cols=73  Identities=8%  Similarity=0.133  Sum_probs=49.8

Q ss_pred             CCcEEEEEeeCCCCC--CChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeCCeEeechhHHHH
Q psy221           41 KSKVVVFMKGVPEAP--RCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~--~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~  116 (205)
                      +.+++||..     +  .||+|.+++-+|+..||+|+.+.|+...  ....++.++....++|.+..||..|.....|.+
T Consensus         4 ~~~~~Ly~~-----~~~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~   78 (215)
T 3bby_A            4 KPAITLWSD-----AHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQIDDFELSESSAIAE   78 (215)
T ss_dssp             CCCEEEEEE-----TTSCCHHHHHHHHHHHHHTCCCEEEEEC------------------CCCEEEETTEEEESHHHHHH
T ss_pred             CCCEEEEec-----CCCCCcHHHHHHHHHHHcCCCCEEEEecCccccccCHHHHhhCCCCCCCEEEeCCeEeecHHHHHH
Confidence            357899988     7  8999999999999999999998886532  233456666666789999999998888877666


Q ss_pred             HH
Q psy221          117 LH  118 (205)
Q Consensus       117 l~  118 (205)
                      ..
T Consensus        79 yL   80 (215)
T 3bby_A           79 YL   80 (215)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=97.59  E-value=0.00042  Score=50.22  Aligned_cols=72  Identities=19%  Similarity=0.261  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHh-cCCc-EEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221           29 TDVQKSIDEMV-KKSK-VVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV  101 (205)
Q Consensus        29 ~~~~~~l~~~~-~~~~-VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv  101 (205)
                      ++..+.+.+.. +..+ |+.|..     +||++|.+....|++.     ++.+..+|++.+++    +.+..+-..+|.+
T Consensus        21 ~~~~~~~~~~~~~~~~~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~   91 (122)
T 2vlu_A           21 EQWTMQIEEANTAKKLVVIDFTA-----SWCGPCRIMAPVFADLAKKFPNAVFLKVDVDELKP----IAEQFSVEAMPTF   91 (122)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEE
T ss_pred             HHHHHHHHHhhccCCEEEEEEEC-----CCCHHHHHHHHHHHHHHHHCCCcEEEEEECCCCHH----HHHHcCCCcccEE
Confidence            33444444432 2334 455666     9999999999888652     47788888887764    3445577789998


Q ss_pred             ee--CCeEee
Q psy221          102 FI--NGEFVG  109 (205)
Q Consensus       102 FI--~G~~IG  109 (205)
                      ++  +|+.+.
T Consensus        92 ~~~~~G~~~~  101 (122)
T 2vlu_A           92 LFMKEGDVKD  101 (122)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEeCCEEEE
Confidence            77  887643

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=97.58  E-value=0.00055  Score=47.87  Aligned_cols=71  Identities=23%  Similarity=0.238  Sum_probs=46.3

Q ss_pred             HHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           30 DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        30 ~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +.++.+.+.-...-++.|..     +|||+|.+....|++    +  ++.+..+|++.+++    +.+..+-..+|.+++
T Consensus        10 ~~~~~l~~~~~~~~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~   80 (106)
T 1xwb_A           10 DLDGQLTKASGKLVVLDFFA-----TWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED----IAMEYNISSMPTFVF   80 (106)
T ss_dssp             HHHHHHHHHTTSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHTTCCSSSEEEE
T ss_pred             HHHHHHHhcCCCEEEEEEEC-----CcCHHHHHhhHHHHHHHHHhCCCeEEEEEeccchHH----HHHHcCCCcccEEEE
Confidence            34444443222233445666     999999999888765    3  56677788876654    444557778999877


Q ss_pred             --CCeEee
Q psy221          104 --NGEFVG  109 (205)
Q Consensus       104 --~G~~IG  109 (205)
                        +|+.+.
T Consensus        81 ~~~G~~~~   88 (106)
T 1xwb_A           81 LKNGVKVE   88 (106)
T ss_dssp             EETTEEEE
T ss_pred             EcCCcEEE
Confidence              887653

>1e6b_A Glutathione S-transferase; 1.65A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5

Probab=97.58  E-value=0.00034  Score=56.08  Aligned_cols=74  Identities=12%  Similarity=0.159  Sum_probs=59.0

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +.++.||..     +.||+|.+++-+|+..|++|+.+.++..  .....++.+.....++|.+..||..|.....|.+..
T Consensus         6 ~~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   80 (221)
T 1e6b_A            6 EEKLKLYSY-----WRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYL   80 (221)
T ss_dssp             --CCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEETTEEEESHHHHHHHH
T ss_pred             CCCeEEEec-----CCCCchHHHHHHHHHcCCCCEEEEecCCcccccCHHHHhhCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            446899988     8999999999999999999999988753  233456667777789999999999898887766654


Q ss_pred             h
Q psy221          119 Q  119 (205)
Q Consensus       119 e  119 (205)
                      +
T Consensus        81 ~   81 (221)
T 1e6b_A           81 D   81 (221)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=97.58  E-value=0.00083  Score=46.45  Aligned_cols=60  Identities=18%  Similarity=0.245  Sum_probs=43.8

Q ss_pred             CCcE-EEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           41 KSKV-VVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        41 ~~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ...+ +.|..     +|||+|..+...|++.     ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+.
T Consensus        16 ~~~~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~   83 (104)
T 2e0q_A           16 HEIAVVDFWA-----EWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPD----IAARYGVMSLPTVIFFKDGEPVD   83 (104)
T ss_dssp             SSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSCEEEEEETTEEEE
T ss_pred             CCcEEEEEEC-----CCChhHHHHhHHHHHHHHHcCCceEEEEECCCCHH----HHHhCCccccCEEEEEECCeEhh
Confidence            3344 44556     9999999999888652     47888888887764    444457778999988  887653

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=97.58  E-value=0.00044  Score=52.87  Aligned_cols=57  Identities=14%  Similarity=0.213  Sum_probs=43.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      -|+.|..     +||++|+++...|+++     ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        35 vvv~F~a-----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~   98 (153)
T 2wz9_A           35 LVVHFWA-----PWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPE----VSEKYEISSVPTFLFFKNSQKI   98 (153)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTTCCSSSEEEEEETTEEE
T ss_pred             EEEEEEC-----CCCHhHHHHHHHHHHHHHHcCCeEEEEEECCCCHH----HHHHcCCCCCCEEEEEECCEEE
Confidence            3445666     9999999999888654     68889999987764    444557788999987  89764

>1gwc_A Glutathione S-transferase TSI-1; herbicide detoxification, plant, TAU class; HET: GTX; 2.25A {Aegilops tauschii} SCOP: a.45.1.1 c.47.1.5

Probab=97.57  E-value=0.0003  Score=56.77  Aligned_cols=72  Identities=15%  Similarity=0.122  Sum_probs=56.5

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC-CCccEEeeCCeEeechhHHHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW-PTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~-~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ..+++||..     +.||+|.+++-+|+..||+|+.+.++... ..+++.++.-. .++|.+..||..|.....|.+..
T Consensus         4 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~yL   76 (230)
T 1gwc_A            4 GDDLKLLGA-----WPSPFVTRVKLALALKGLSYEDVEEDLYK-KSELLLKSNPVHKKIPVLIHNGAPVCESMIILQYI   76 (230)
T ss_dssp             CCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTS-CCHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCcEEEEeC-----CCChHHHHHHHHHHHcCCCCeEEeccccc-CCHHHHhhCCCCCccCEEEECCEEeecHHHHHHHH
Confidence            467999999     99999999999999999999999886431 12344555543 68999999998888877766653

>4hi7_A GI20122; GST, glutathione S-transferase, enzyme function initiative, structural genomics, unknown function; HET: GSH; 1.25A {Drosophila mojavensis}

Probab=97.57  E-value=0.00028  Score=57.00  Aligned_cols=72  Identities=15%  Similarity=0.101  Sum_probs=57.4

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .+.+||..     +.||+|.+|+-+|+..||+|+.+.|+.  .+...+++.+++-..+||.+..||..|.....|.+..
T Consensus         2 ~kpiLY~~-----~~Sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~~~~l~eS~aI~~YL   75 (228)
T 4hi7_A            2 VKPILYGI-----DASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLKKNPQHTVPLLEDGDANIADSHAIMAYL   75 (228)
T ss_dssp             -CCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CceEEEEC-----CCChHHHHHHHHHHHhCCCCEEEEecCCCcccCCHHHHHhCCCCceeeEEECCEEEechHHHHHHH
Confidence            34579998     999999999999999999999887764  3334456777776778999999999888777666653

>1zl9_A GST class-sigma, glutathione S-transferase 5; glutathione transferase, C.elegans; HET: GSH; 2.01A {Caenorhabditis elegans}

Probab=97.56  E-value=0.00038  Score=55.22  Aligned_cols=71  Identities=13%  Similarity=0.217  Sum_probs=58.3

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHH--hCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEY--TSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~--~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      ..++||..     +.||+|.+++-+|+..||+|+.+.++.+.  ..++++.  ....++|.+..||..|.....|.+..+
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   74 (207)
T 1zl9_A            2 VSYKLTYF-----NGRGAGEVSRQIFAYAGQQYEDNRVTQEQ--WPALKETCAAPFGQLPFLEVDGKKLAQSHAIARFLA   74 (207)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHHHTTCSTTSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CceEEEEc-----CCCchHHHHHHHHHHcCCCceEEEecHHH--HHHHhhccCCCCCCCCEEEECCEEEeeHHHHHHHHH
Confidence            46889988     89999999999999999999999987532  3567777  566789999999998888877666543

>4iel_A Glutathione S-transferase, N-terminal domain PROT; GST, glutathione S-transferase, enzyme function initiative, structural genomics; HET: GSH; 1.60A {Burkholderia ambifaria}

Probab=97.56  E-value=0.00019  Score=58.13  Aligned_cols=78  Identities=9%  Similarity=0.082  Sum_probs=57.7

Q ss_pred             HHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhH
Q psy221           36 DEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDI  113 (205)
Q Consensus        36 ~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~de  113 (205)
                      ..+..+.-++||..     +.||+|.+++-+|+..||+|+.+.|+..  +....++.++....++|.+..||..|.....
T Consensus        16 ~~~~m~~m~~Ly~~-----~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~a   90 (229)
T 4iel_A           16 ENLYFQSMLHILGK-----IPSINVRKVLWLCTELNLPFEQEDWGAGFRTTNDPAYLALNPNGLVPVIKDDGFVLWESNT   90 (229)
T ss_dssp             ------CCEEEESC-----TTCHHHHHHHHHHHHHTCCEEEECCC-------CHHHHTTCTTCCSCEEEETTEEEECHHH
T ss_pred             ceecccceEEEecC-----CCCcchHHHHHHHHHCCCCcEEEEecCCcCCcCCHHHHhcCCCCCCCEEEECCEEEEeHHH
Confidence            34444556899988     9999999999999999999999988643  2334566777777899999999999988877


Q ss_pred             HHHHH
Q psy221          114 LLKLH  118 (205)
Q Consensus       114 l~~l~  118 (205)
                      |.+..
T Consensus        91 I~~yL   95 (229)
T 4iel_A           91 IIRYL   95 (229)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66653

>1gnw_A Glutathione S-transferase; herbicide detoxification; HET: GTX; 2.20A {Arabidopsis thaliana} SCOP: a.45.1.1 c.47.1.5 PDB: 1bx9_A*

Probab=97.56  E-value=0.00018  Score=56.98  Aligned_cols=71  Identities=10%  Similarity=0.082  Sum_probs=56.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +++||..     +.||+|.+++-+|+..||+|+.+.++...  ....++.++....++|.+..||..|.....|.+..
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   74 (211)
T 1gnw_A            2 GIKVFGH-----PASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQYI   74 (211)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             eeEEEeC-----CCCcchHHHHHHHHhcCCCcEEEEeccccccccCHHHHHhCCCCCCCEEEECCEEEeCHHHHHHHH
Confidence            5789998     99999999999999999999999886432  22344555666679999999999888887766653

>3vln_A GSTO-1, glutathione S-transferase omega-1; GST fold, reductase; HET: ASC; 1.70A {Homo sapiens} PDB: 1eem_A* 3lfl_A*

Probab=97.55  E-value=0.00017  Score=58.69  Aligned_cols=72  Identities=7%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLH  118 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~  118 (205)
                      .+.++||..     +.||+|.+++-+|+..||+|+.+.|+... ..+++.++....++|.+.. ||..|.....|.+..
T Consensus        21 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL   93 (241)
T 3vln_A           21 EGSIRIYSM-----RFSPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYL   93 (241)
T ss_dssp             TTCEEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEEBCTTS-CCTTHHHHCTTCCSCEEECTTCCEEESHHHHHHHH
T ss_pred             CCeEEEEcC-----CCCcHHHHHHHHHHHcCCCCeEEecCccc-CCHHHHHhCCCCCCCEEEECCCcEEEcHHHHHHHH
Confidence            457999999     99999999999999999999999987542 1234556667788999999 888888777766653

>2on5_A Nagst-2, Na glutathione S-transferase 2; hookworm; HET: GSH; 1.90A {Necator americanus}

Probab=97.54  E-value=0.00023  Score=56.20  Aligned_cols=71  Identities=13%  Similarity=0.134  Sum_probs=57.7

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      .+++||..     +.||+|.+++-+|+..||+|+.+.++.+.  ..++.+.....++|.+..||..|.....|.+..+
T Consensus         2 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   72 (206)
T 2on5_A            2 VHYKLTYF-----AGRGLAEPIRQIFALAGQKYEDVRYTFQE--WPKHKDEMPFGQIPVLEEDGKQLAQSFAIARYLS   72 (206)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTT--GGGGGGGSTTSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CceEEEec-----CCCcchHHHHHHHHHcCCCceEEEecHHH--HHHhccCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            46889988     89999999999999999999999987532  2455566667799999999999988877666543

>3lxz_A Glutathione S-transferase family protein; structural genomics, PP0183, PSI-2, protein structure initiative; 1.76A {Pseudomonas putida} PDB: 3pr8_A*

Probab=97.54  E-value=0.0003  Score=56.71  Aligned_cols=70  Identities=10%  Similarity=0.144  Sum_probs=57.7

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      .+.||..     +.||+|.+++-+|+..||+|+.+.|..+  ...++.++....++|.+..+|..|.....|.+..+
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~~P~g~vP~L~~~~~~l~eS~aI~~yL~   71 (229)
T 3lxz_A            2 SLKLYGF-----SVSNYYNMVKLALLEKGLTFEEVTFYGG--QAPQALEVSPRGKVPVLETEHGFLSETSVILDYIE   71 (229)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCCC--SCHHHHTTSTTSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             eEEEEeC-----CCCchHHHHHHHHHHcCCCCEEEecCCC--CCHHHHhhCCCCCcCeEEeCCceeecHHHHHHHHH
Confidence            3789998     9999999999999999999999999543  24566677777899999999988888777666543

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=97.53  E-value=0.0004  Score=49.31  Aligned_cols=71  Identities=15%  Similarity=0.270  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHhc-CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221           29 TDVQKSIDEMVK-KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV  101 (205)
Q Consensus        29 ~~~~~~l~~~~~-~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv  101 (205)
                      .+..+.+..... ...++| |..     +||++|......|++.     ++.+..+|++.++++.+.    .+-..+|.+
T Consensus        13 ~~~~~~~~~~~~~~~~~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~----~~v~~~Pt~   83 (113)
T 1ti3_A           13 DTWKEHFEKGKGSQKLIVVDFTA-----SWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAEE----WNVEAMPTF   83 (113)
T ss_dssp             HHHHHHHHHHTTSSSEEEEEEEC-----SSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHHH----HHCSSTTEE
T ss_pred             HHHHHHHHHhhhcCCeEEEEEEC-----CCCHHHHHHHHHHHHHHHhCCCcEEEEEEccccHHHHHh----CCCCcccEE
Confidence            345555555442 334444 666     9999999998877653     577888888877655443    345678988


Q ss_pred             ee--CCeEe
Q psy221          102 FI--NGEFV  108 (205)
Q Consensus       102 FI--~G~~I  108 (205)
                      ++  +|+.+
T Consensus        84 ~~~~~G~~~   92 (113)
T 1ti3_A           84 IFLKDGKLV   92 (113)
T ss_dssp             EEEETTEEE
T ss_pred             EEEeCCEEE
Confidence            77  88754

>2ws2_A NU-class GST, glutathione S-transferase; parasite, nematode; 2.01A {Haemonchus contortus}

Probab=97.52  E-value=0.00031  Score=55.50  Aligned_cols=71  Identities=10%  Similarity=0.155  Sum_probs=57.8

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      .+++||..     +.||+|.+++-+|+..||+|+.+.|+.+.  ..++.++....++|.+..||..|.....|.+..+
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   72 (204)
T 2ws2_A            2 VHYKLTYF-----NGRGAAEIIRQVFVLAGQDYEDVRLTHEE--WPKHKASMPFGQLPVLEVDGKQLPQSVAIVRYLA   72 (204)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECTTT--GGGTGGGSTTSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CccEEEEe-----CCCchHHHHHHHHHHcCCCceEEEecHhh--HHHhhhcCCCCCCCEEEECCEEeecHHHHHHHHH
Confidence            46789988     89999999999999999999999887532  2455566667799999999999988877766543

>2v6k_A Maleylpyruvate isomerase; glutathione-S-transferase, GST, plasmid, bacterial, biodegradation, fumaryl pyruvate; HET: TGG; 1.3A {Ralstonia SP} PDB: 2jl4_A*

Probab=97.52  E-value=0.00031  Score=55.80  Aligned_cols=71  Identities=15%  Similarity=0.248  Sum_probs=57.1

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +++||..     +.||+|.+++-+|+..||+|+.+.++...  ....++.++....++|.+..||..|.....|.+..
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   74 (214)
T 2v6k_A            2 KMKLYNF-----WRSGTSHRLRIALNLKGVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVLIQSPAIIEWL   74 (214)
T ss_dssp             CCEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEECSSCEEECHHHHHHHH
T ss_pred             eeEEEec-----CCCCcHHHHHHHHHHCCCCceEEecCCCcccccCHHHHhcCCCCcCCEEEECCEEEecHHHHHHHH
Confidence            4688988     89999999999999999999999887532  33456677777789999987888888877766653

>2vo4_A 2,4-D inducible glutathione S-transferase; herbicide, TAU class GST, S-(P-nitrobenzyl- glutathione); HET: GTB 4NM; 1.75A {Glycine max} PDB: 3fhs_A*

Probab=97.52  E-value=0.00047  Score=55.24  Aligned_cols=72  Identities=15%  Similarity=0.113  Sum_probs=56.4

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC-CCccEEeeCCeEeechhHHHHHHh
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW-PTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~-~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      .++.||..     +.||+|.+++-+|+..||+|+.+.++.. ....++.+.... .++|.+..||..+.....+.+..+
T Consensus         3 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vP~L~~~g~~l~eS~aI~~yL~   75 (219)
T 2vo4_A            3 DEVVLLDF-----WPSPFGMRVRIALAEKGIKYEYKEEDLR-NKSPLLLQMNPVHKKIPVLIHNGKPICESLIAVQYIE   75 (219)
T ss_dssp             CCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTT-SCCHHHHHHCTTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CceEEEec-----cCCchHHHHHHHHHHcCCCceEEecCcc-cCCHHHHHhCCCCCcCCEEEECCEeeehHHHHHHHHH
Confidence            47899998     8999999999999999999999988643 122345555554 689999999988888777666543

>1pn9_A GST class-delta, glutathione S-transferase 1-6; protein inhibitor complex; HET: GTX; 2.00A {Anopheles gambiae} SCOP: a.45.1.1 c.47.1.5

Probab=97.51  E-value=0.00045  Score=54.98  Aligned_cols=69  Identities=13%  Similarity=0.018  Sum_probs=56.0

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .||..     +.||+|.+++-+|+..||+|+.+.++..  +....++.++....++|.+..||..|.....|.+..
T Consensus         2 ~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   72 (209)
T 1pn9_A            2 DFYYL-----PGSAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKLNPQHCIPTLVDNGFALWESRAIQIYL   72 (209)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSSEEEETTEEEESHHHHHHHH
T ss_pred             eEEeC-----CCCccHHHHHHHHHHcCCCcEEEEecccCCCcCCHHHHhhCCCCCCCEEEECCEEEEeHHHHHHHH
Confidence            67888     8999999999999999999999988642  223356677777779999999999898887766653

>1aw9_A Glutathione S-transferase III; herbicide detoxification; 2.20A {Zea mays} SCOP: a.45.1.1 c.47.1.5

Probab=97.51  E-value=0.00012  Score=58.26  Aligned_cols=72  Identities=10%  Similarity=0.088  Sum_probs=56.6

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      ++.||..     +.||+|.+++-+|+..||+|+.+.++...  ....++.+++...++|.+..||..|.....|.+..+
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   75 (216)
T 1aw9_A            2 PLKLYGM-----PLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYIA   75 (216)
T ss_dssp             CEEEESC-----TTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             ceEEEec-----CCCccHHHHHHHHHHcCCccEEEecCccccccCCHHHHHhCCCCCcCEEEECCEEeeCHHHHHHHHH
Confidence            5789988     99999999999999999999999886432  112344455667799999999999988877766543

>2a2r_A Glutathione S-transferase P; detoxification, nitric oxide carrier, S- nitrosoglutathione; HET: MES GSN; 1.40A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 11gs_A* 12gs_A* 14gs_A* 16gs_A* 18gs_A* 21gs_A* 13gs_A* 2a2s_A* 3dd3_A* 3dgq_A* 3n9j_A* 3pgt_A* 1pgt_A* 2pgt_A* 4pgt_A* 22gs_A* 17gs_A* 3gus_A* 10gs_A* 1aqv_A* ...

Probab=97.51  E-value=0.00038  Score=55.42  Aligned_cols=72  Identities=13%  Similarity=0.097  Sum_probs=57.1

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .+++||..     +.||+|.+++-+|+..||+|+.+.|+......+++.......++|.+..||..|.....|.+..
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   73 (210)
T 2a2r_A            2 PPYTVVYF-----PVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRHL   73 (210)
T ss_dssp             CSEEEEEC-----SSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEe-----CCcchHHHHHHHHHHcCCCceEEEecHHhhchhhccCCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            46789988     8899999999999999999999998753222335666666778999999998888777666543

>2on7_A Nagst-1, Na glutathione S-transferase 1; hookworm; 2.40A {Necator americanus}

Probab=97.51  E-value=0.00042  Score=54.70  Aligned_cols=70  Identities=11%  Similarity=0.141  Sum_probs=57.7

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .+++||..     +.||+|.+++-+|+..||+|+.+.++.+  ...++.+.+...++|.+..||..|.....|.+..
T Consensus         2 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~~e~~~v~~~--~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   71 (206)
T 2on7_A            2 VHYKLTYF-----AIRGAGECARQIFALADQEFEDVRLDKE--QFAKVKPDLPFGQVPVLEVDGKQLAQSLAICRYL   71 (206)
T ss_dssp             CCEEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEECHH--HHHHHGGGSSSSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CceEEEEc-----CCCcchHHHHHHHHHcCCCeeEEEecHH--HHHHhCcCCCCCCCCEEEECCEEEeeHHHHHHHH
Confidence            46889988     8999999999999999999999998742  2356667777779999999999898887766654

>2imi_A Epsilon-class glutathione S-transferase; HET: GSH; 1.40A {Anopheles gambiae} PDB: 2il3_A* 2imk_A*

Probab=97.50  E-value=0.00038  Score=55.89  Aligned_cols=72  Identities=13%  Similarity=0.129  Sum_probs=58.2

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .+++||..     +.||+|.+++-+|+..|++|+.+.++..  +....++.++....++|.+..||..|.....|.+..
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   75 (221)
T 2imi_A            2 SNLVLYTL-----HLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLDDNGTIITESHAIMIYL   75 (221)
T ss_dssp             CCEEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CceEEeeC-----CCCccHHHHHHHHHHcCCCceEEEccccccccCCHHHHhhCcCCCCCEEEECCEEEeeHHHHHHHH
Confidence            35889998     9999999999999999999999988743  223456666777779999988898888887766653

>1yq1_A Glutathione S-transferase; nematoda, structural genomics, PSI, protein structure initiative; 3.00A {Caenorhabditis elegans}

Probab=97.50  E-value=0.00025  Score=56.13  Aligned_cols=72  Identities=14%  Similarity=0.177  Sum_probs=57.1

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      .+++||..     +.||+|.+++-+|+..||+|+.+.++... ...++.+.+...++|.+..||..|.....|.+..+
T Consensus         2 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~~e~~~v~~~~-~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   73 (208)
T 1yq1_A            2 PSYKLTYF-----FFRGLGEPIRLLFHLAGVQFEEVRMNPDQ-TWLDIKDSTPMKQLPVLNIDGFELPQSGAILRYLA   73 (208)
T ss_dssp             CCEEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEECTTT-CCHHHHHTSTTSCSCEEEESSCEECCHHHHHHHHH
T ss_pred             CceEEEEe-----CCCCchHHHHHHHHHcCCCeEEEEecccc-hhhhhhccCCCCCCCEEEECCEEEeeHHHHHHHHH
Confidence            46889988     89999999999999999999999887311 12456666667799999999988888777666543

>1okt_A Glutathione S-transferase; GST; 1.9A {Plasmodium falciparum} SCOP: a.45.1.1 c.47.1.5 PDB: 1pa3_A 1q4j_A* 3fr9_A* 3frc_A* 2aaw_A* 3fr6_A 3fr3_A*

Probab=97.49  E-value=0.00039  Score=55.38  Aligned_cols=72  Identities=11%  Similarity=0.190  Sum_probs=57.3

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH-----HhCCCCccEEeeCCeEeechhHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE-----YTSWPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~-----~~g~~tvPqvFI~G~~IGG~del~~  116 (205)
                      .+++||..     +.||+|.+++-+|+..||+|+.+.++...+...++.+     .....++|.+..||..|.....|.+
T Consensus         3 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~   77 (211)
T 1okt_A            3 DNIVLYYF-----DARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVR   77 (211)
T ss_dssp             CCEEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHH
T ss_pred             CccEEEEE-----CCCchhHHHHHHHHHcCCCceeeeccCCHHHHHHHhhccccccCCCCCCCEEEECCEEeehHHHHHH
Confidence            46889998     8999999999999999999999988532222355666     6667789999999998888777666


Q ss_pred             HH
Q psy221          117 LH  118 (205)
Q Consensus       117 l~  118 (205)
                      ..
T Consensus        78 yL   79 (211)
T 1okt_A           78 YL   79 (211)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=97.49  E-value=0.00059  Score=50.40  Aligned_cols=72  Identities=17%  Similarity=0.268  Sum_probs=48.5

Q ss_pred             hHHHHHHHHHhc-CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221           29 TDVQKSIDEMVK-KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV  101 (205)
Q Consensus        29 ~~~~~~l~~~~~-~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv  101 (205)
                      ++.++.+.+... ...++| |..     +||++|.+....|+++     ++.+..+|++.+++    +.+..+-..+|.+
T Consensus        25 ~~~~~~l~~~~~~~k~vvv~f~a-----~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~   95 (124)
T 1xfl_A           25 ETWNEQLQKANESKTLVVVDFTA-----SWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKS----VASDWAIQAMPTF   95 (124)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEC-----TTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHH----HHHHTTCCSSSEE
T ss_pred             HHHHHHHHHhhhcCCEEEEEEEC-----CCCHHHHHHHHHHHHHHHHCCCcEEEEEECccCHH----HHHHcCCCccCEE
Confidence            345555554432 334444 656     9999999999888653     56777888876654    4445577889998


Q ss_pred             ee--CCeEee
Q psy221          102 FI--NGEFVG  109 (205)
Q Consensus       102 FI--~G~~IG  109 (205)
                      ++  +|+.+.
T Consensus        96 ~~~~~G~~~~  105 (124)
T 1xfl_A           96 MFLKEGKILD  105 (124)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEECCEEEE
Confidence            77  887653

>2cvd_A Glutathione-requiring prostaglandin D synthase; glutathione-S-transferase, isomerase; HET: GSH HQL; 1.45A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1iyi_A* 1v40_A* 1iyh_A* 3vi5_A* 3vi7_A* 2vcq_A* 2vcw_A* 2vcx_A* 2vcz_A* 2vd0_A* 2vd1_A* 3kxo_A* 3ee2_A* 1pd2_1*

Probab=97.48  E-value=0.00064  Score=53.49  Aligned_cols=70  Identities=14%  Similarity=0.162  Sum_probs=57.9

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      ++.||..     +.||+|.+++-+|+..||+|+.+.++.+  ...++.+++...++|.+..||..|.....|.+..+
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~--~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   71 (198)
T 2cvd_A            2 NYKLTYF-----NMRGRAEIIRYIFAYLDIQYEDHRIEQA--DWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYLT   71 (198)
T ss_dssp             CEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECGG--GHHHHHTTSTTSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CcEEEEc-----CCCchHHHHHHHHHHcCCCceEEEeCHH--HHHHhccCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            4788988     8999999999999999999999988752  24566667667799999999998988877776544

>1tw9_A Glutathione S-transferase 2; 1.71A {Heligmosomoides polygyrus} SCOP: a.45.1.1 c.47.1.5

Probab=97.48  E-value=0.00043  Score=54.61  Aligned_cols=71  Identities=10%  Similarity=0.173  Sum_probs=57.5

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      .+++||..     +.||+|.+++-+|+..||+|+.+.++.+  ...++.++....++|.+..||..|.....|.+..+
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   72 (206)
T 1tw9_A            2 VHYKLTYF-----NGRGAGECARQVFALADQKYEDVRLTQE--TFVPLKATFPFGQVPVLEVDGQQLAQSQAICRYLA   72 (206)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECHH--HHGGGGGGSTTSCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CceEEEEc-----CCCccHHHHHHHHHHcCCCceEEEeCHH--HHHHHcccCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            46889988     8999999999999999999999998732  22455566667799999999999988877766543

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=97.48  E-value=0.00081  Score=47.03  Aligned_cols=60  Identities=22%  Similarity=0.241  Sum_probs=43.2

Q ss_pred             CCcE-EEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           41 KSKV-VVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        41 ~~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ...+ +.|..     +||++|......|++.      ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+.
T Consensus        18 ~~~~lv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~   86 (109)
T 2yzu_A           18 HPLVLVDFWA-----EWCAPCRMIAPILEEIAKEYEGKLLVAKLDVDENPK----TAMRYRVMSIPTVILFKDGQPVE   86 (109)
T ss_dssp             CSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEEC-----CCCHHHHHhhHHHHHHHHHhhCceEEEEEECCCCHh----HHHhCCCCcCCEEEEEeCCcEee
Confidence            3344 44555     9999999999887653      47778888877764    444557778999988  887653

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=97.48  E-value=0.00042  Score=51.53  Aligned_cols=57  Identities=19%  Similarity=0.340  Sum_probs=43.1

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      |+.|..     +||++|..+...|+++     ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+.
T Consensus        41 vv~F~a-----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~i~~~G~~~~  104 (125)
T 1r26_A           41 VAWFTA-----VWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSE----IVSKCRVLQLPTFIIARSGKMLG  104 (125)
T ss_dssp             EEEEEC-----TTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEC-----CcCHhHHHHHHHHHHHHHHCCCCEEEEEECCCCHH----HHHHcCCCcccEEEEEeCCeEEE
Confidence            444666     9999999999888653     68888999987764    444457778999988  887643

>3n5o_A Glutathione transferase; seattle structural genomics center for infectious disease, S GST, pathogenic fungus, coccidioidomycosis; HET: GSH; 1.85A {Coccidioides immitis} PDB: 3lg6_A*

Probab=97.47  E-value=0.0006  Score=55.12  Aligned_cols=71  Identities=17%  Similarity=0.216  Sum_probs=58.6

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCC-----------eEe
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFING-----------EFV  108 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G-----------~~I  108 (205)
                      .+++||..     +.||+|.+++-+|+..||+|+.+.|+..  +....++.++....++|.|.++|           ..|
T Consensus         8 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~~~~~~~~~~~l   82 (235)
T 3n5o_A            8 PNFELYGY-----FRSSCSGRLRIAFHLKSIPYTRHPVNLLKGEQHSDTYKSLNPTNTVPLLVVSNINNTVSPSSASFSI   82 (235)
T ss_dssp             CEEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEEESSCCSSSTTCSEEEE
T ss_pred             CCeEEEec-----CCCcHHHHHHHHHHHcCCccEEEecccccccccCHHHHhcCCCCCCCEEEeCCCccccccccCceee
Confidence            57999998     8999999999999999999999988643  33445777777778999999988           888


Q ss_pred             echhHHHHH
Q psy221          109 GGCDILLKL  117 (205)
Q Consensus       109 GG~del~~l  117 (205)
                      .....|.+.
T Consensus        83 ~eS~aI~~y   91 (235)
T 3n5o_A           83 GQSLAALEY   91 (235)
T ss_dssp             CSHHHHHHH
T ss_pred             hhHHHHHHH
Confidence            777766654

>3ay8_A Glutathione S-transferase; GST fold, GST binding, cytosolic; 2.10A {Bombyx mori}

Probab=97.46  E-value=0.00038  Score=55.65  Aligned_cols=72  Identities=14%  Similarity=0.092  Sum_probs=58.0

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .+++||..     +.||+|.+++-+|+..||+|+.+.++..  +....++.++....++|.+..||..|.....|.+..
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   75 (216)
T 3ay8_A            2 SSLKLYHF-----PVSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDDNNFVLWESRAIACYL   75 (216)
T ss_dssp             CCCEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCGGGCCHHHHHHSSSCCSSEEEETTEEEECHHHHHHHH
T ss_pred             CceEEecC-----CCCccHHHHHHHHHHcCCCceEEEeccccccccCHHHHhhCCCCCCCeEEECCEEEEcHHHHHHHH
Confidence            35789988     8999999999999999999999988743  222356667777779999999999888877766653

>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase, detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles dirus} SCOP: a.45.1.1 c.47.1.5

Probab=97.45  E-value=0.00074  Score=53.63  Aligned_cols=69  Identities=10%  Similarity=0.093  Sum_probs=56.5

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .||..     +.||+|.+++-+|+..||+|+.+.++.. .+...++.++....++|.+..||..|.....|.+..
T Consensus         2 ~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   71 (210)
T 1v2a_A            2 DYYYS-----LISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLVDNGHVVWESYAIVLYL   71 (210)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEeC-----CCCccHHHHHHHHHHcCCCcEEEECCcccchhhHHHHHhCCCCCcCeEEECCEEEEcHHHHHHHH
Confidence            67888     8999999999999999999999988753 222367777777789999999999888887766653

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=97.45  E-value=0.0011  Score=48.09  Aligned_cols=72  Identities=17%  Similarity=0.212  Sum_probs=47.8

Q ss_pred             hHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEcc-CCHhHHHHHHHHhCCCCccEEe
Q psy221           29 TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVL-KDESIRNGIKEYTSWPTIPQVF  102 (205)
Q Consensus        29 ~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~-~d~~~~~eL~~~~g~~tvPqvF  102 (205)
                      ++..+.+.+.-...-|+.|..     +|||+|++....|++.     ++.+..+|++ .++    ++.+..+-..+|.++
T Consensus        26 ~~~~~~~~~~~~~~~vv~f~a-----~wC~~C~~~~~~l~~~~~~~~~~~~~~vd~~~~~~----~~~~~~~v~~~Pt~~   96 (124)
T 1faa_A           26 DTFWPIVKAAGDKPVVLDMFT-----QWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENK----TLAKELGIRVVPTFK   96 (124)
T ss_dssp             TTHHHHHHHTTTSCEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTH----HHHHHHCCSSSSEEE
T ss_pred             hhHHHHHHhcCCCEEEEEEEC-----CcCHhHHHHhHHHHHHHHHCCCCEEEEEecCcchH----HHHHHcCCCeeeEEE
Confidence            445554443223334455666     9999999999888653     5778888886 343    344555778899987


Q ss_pred             e--CCeEee
Q psy221          103 I--NGEFVG  109 (205)
Q Consensus       103 I--~G~~IG  109 (205)
                      +  +|+.++
T Consensus        97 ~~~~G~~~~  105 (124)
T 1faa_A           97 ILKENSVVG  105 (124)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCcEEE
Confidence            7  887653

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=97.44  E-value=0.0007  Score=47.43  Aligned_cols=59  Identities=15%  Similarity=0.259  Sum_probs=43.1

Q ss_pred             CcEE-EEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           42 SKVV-VFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        42 ~~Vv-lYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      .+++ .|..     +||++|......|++.      ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+.
T Consensus        21 ~~~lv~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   88 (107)
T 2i4a_A           21 GLVLVDFWA-----EWCGPCKMIGPALGEIGKEFAGKVTVAKVNIDDNPE----TPNAYQVRSIPTLMLVRDGKVID   88 (107)
T ss_dssp             SEEEEEEEC-----TTCHHHHHHHHHHHHHHHHHTTSEEEEEEETTTCCH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             CEEEEEEEC-----CCChhHHHHhHHHHHHHHHhCCcEEEEEEECCCCHH----HHHhcCCCccCEEEEEeCCEEEE
Confidence            3444 4666     9999999999888652      46778888877764    344457778999988  898654

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=97.44  E-value=0.0016  Score=45.41  Aligned_cols=61  Identities=20%  Similarity=0.285  Sum_probs=43.7

Q ss_pred             cCCcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           40 KKSKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        40 ~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      +..+++| |..     +||++|+.....|++.      .+.+..+|++.++++    .+..+-..+|.+++  +|+.+.
T Consensus        18 ~~~~~lv~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~v~~~Pt~~~~~~G~~~~   87 (106)
T 3die_A           18 ESGVQLVDFWA-----TACGPCKMIAPVLEELAADYEGKADILKLDVDENPST----AAKYEVMSIPTLIVFKDGQPVD   87 (106)
T ss_dssp             CSSEEEEEEEC-----SBCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHTTCCSBSEEEEEETTEEEE
T ss_pred             cCCcEEEEEEC-----CCCHHHHHHhHHHHHHHHHhcCCcEEEEEECCcCHHH----HHhCCCcccCEEEEEeCCeEEE
Confidence            5555555 555     9999999999888543      267788888877653    44557778999877  887554

>3m3m_A Glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, N SGX research center for structural genomics; HET: GSH; 1.75A {Pseudomonas fluorescens}

Probab=97.43  E-value=0.00064  Score=53.88  Aligned_cols=73  Identities=15%  Similarity=0.202  Sum_probs=57.7

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~e  119 (205)
                      .+.||..     +.||+|.+++-+|+..||+|+.+.++..  +....++.++....++|.+.+ ||..|.....|.+..+
T Consensus         3 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~d~g~~l~eS~aI~~yL~   77 (210)
T 3m3m_A            3 LYKVYGD-----YRSGNCYKIKLMLNLLGLPYEWQAVDILGGDTQTEAFLAKNPNGKIPVLELEDGTCLWESNAILNFLA   77 (210)
T ss_dssp             CEEEEEC-----TTSHHHHHHHHHHHHTTCCEEEEECCTTTTTTSSHHHHTTCTTCCSCEEEETTSCEEECHHHHHHHHH
T ss_pred             eEEEeCC-----CCCCcHHHHHHHHHHcCCCCEEEEecCCCccccCHHHHhhCCCCCCCEEEecCCEEEecHHHHHHHHh
Confidence            4789988     9999999999999999999999988742  233456667777789999996 7778877776666544


Q ss_pred             c
Q psy221          120 S  120 (205)
Q Consensus       120 ~  120 (205)
                      .
T Consensus        78 ~   78 (210)
T 3m3m_A           78 D   78 (210)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=97.43  E-value=0.0011  Score=48.19  Aligned_cols=57  Identities=26%  Similarity=0.383  Sum_probs=41.4

Q ss_pred             cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           43 KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      .|+| |..     +||++|+.+...|+++     ++.+-.+|++.+++    |.+..+-..+|.+++  +|+.+
T Consensus        22 ~vvv~F~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~V~~~PT~~~~~~G~~v   86 (105)
T 3zzx_A           22 LVVIDFYA-----TWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECED----IAQDNQIACMPTFLFMKNGQKL   86 (105)
T ss_dssp             EEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHTTCCBSSEEEEEETTEEE
T ss_pred             EEEEEEEC-----CCCCCccCCCcchhhhhhccCCeEEEEEecccCHH----HHHHcCCCeecEEEEEECCEEE
Confidence            4554 667     9999999999888654     45677888887764    445567778898744  88754

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=97.42  E-value=0.0018  Score=46.70  Aligned_cols=60  Identities=10%  Similarity=0.151  Sum_probs=42.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHH----hCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILR----MHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~----~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ++.|..     +|||+|++....|.    .+++.+..+|++...  +...++.+..+-..+|.+++  +|+.+
T Consensus        33 ~v~f~a-----~wC~~C~~~~p~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~Pt~~~~~~G~~~  100 (118)
T 1zma_A           33 TFFIGR-----KTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHITDGQIN  100 (118)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEETTEEE
T ss_pred             EEEEEC-----CCCccHHHHHHHHHHHHHhcCCeEEEEECCCcCcHHHHHHHHHHcCCCCCCeEEEEECCEEE
Confidence            455666     99999999876664    456788888887543  33346666678889999865  78654

>3rbt_A Glutathione transferase O1; glutathione S-transferase omega3; 2.20A {Bombyx mori}

Probab=97.41  E-value=0.00052  Score=56.35  Aligned_cols=72  Identities=11%  Similarity=0.170  Sum_probs=58.3

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCe---EeechhHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGE---FVGGCDILLK  116 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~---~IGG~del~~  116 (205)
                      ...++||..     +.||+|.+++-+|+..||+|+.+.|+... ..+++.++....++|.+.. ||.   .|.....|.+
T Consensus        24 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~nP~g~vP~L~~~~g~~~~~l~eS~aI~~   97 (246)
T 3rbt_A           24 TDKLRLYHV-----DMNPYGHRVLLVLEAKRIKYEVYRLDPLR-LPEWFRAKNPRLKIPVLEIPTDQGDRFLFESVVICD   97 (246)
T ss_dssp             CSSEEEEEC-----TTCHHHHHHHHHHHHTTBCEEEEECCSSS-CCHHHHHHCTTCBSCEEEECCTTSCEEECCHHHHHH
T ss_pred             CCceEEEec-----CCCccHHHHHHHHHHcCCCceEEEeCccc-CCHHHHHhCCCCCCCEEEecCCCCceeeeCHHHHHH
Confidence            356899999     99999999999999999999999987543 2345667777789999999 887   7877766655


Q ss_pred             HH
Q psy221          117 LH  118 (205)
Q Consensus       117 l~  118 (205)
                      ..
T Consensus        98 yL   99 (246)
T 3rbt_A           98 YL   99 (246)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=97.40  E-value=0.0013  Score=46.37  Aligned_cols=60  Identities=22%  Similarity=0.421  Sum_probs=43.4

Q ss_pred             CCcE-EEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           41 KSKV-VVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        41 ~~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ...+ +.|..     +||++|+.+...|++.      ++.+..+|++.+++    +.+..+-..+|.+++  +|+.++
T Consensus        22 ~~~vlv~f~a-----~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~~~~   90 (111)
T 3gnj_A           22 GKACLVMFSR-----KNCHVCQKVTPVLEELRLNYEESFGFYYVDVEEEKT----LFQRFSLKGVPQILYFKDGEYKG   90 (111)
T ss_dssp             CCCEEEEEEC-----SSCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHH----HHHHTTCCSSCEEEEEETTEEEE
T ss_pred             CCEEEEEEeC-----CCChhHHHHHHHHHHHHHHcCCceEEEEEECCcChh----HHHhcCCCcCCEEEEEECCEEEE
Confidence            3444 44666     9999999999888643      37788888887764    444557788998866  887653

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=97.40  E-value=0.00062  Score=48.54  Aligned_cols=56  Identities=20%  Similarity=0.262  Sum_probs=40.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEcc-CCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVL-KDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~-~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ++.|..     +||++|.+....|++.     ++.+..+|++ .++    ++.+..+-..+|.+++  +|+.+
T Consensus        28 lv~f~a-----~wC~~C~~~~~~l~~~~~~~~~v~~~~vd~~~~~~----~~~~~~~v~~~Pt~~~~~~G~~~   91 (111)
T 2pu9_C           28 VLDMFT-----QWCGPSKAMAPKYEKLAEEYLDVIFLKLDCNQENK----TLAKELGIRVVPTFKILKENSVV   91 (111)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTH----HHHHHHCCSBSSEEEEESSSSEE
T ss_pred             EEEEEC-----CcCHhHHHHCHHHHHHHHHCCCeEEEEEecCcchH----HHHHHcCCCeeeEEEEEeCCcEE
Confidence            444666     9999999999888653     5778888886 444    3444557788999777  78654

>1z9h_A Membrane-associated prostaglandin E synthase-2; membran associated protein, indomethacin, isomerase; HET: IMN; 2.60A {Macaca fascicularis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pbj_A*

Probab=97.38  E-value=0.00044  Score=58.48  Aligned_cols=71  Identities=17%  Similarity=0.421  Sum_probs=54.7

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC--C--eEeechhHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN--G--EFVGGCDILLK  116 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~--G--~~IGG~del~~  116 (205)
                      ...++||+.     +.||+|.+++.+|+.+||+|+.++|+...  ..++ ++.+..++|+|.++  |  ..+.....|.+
T Consensus        12 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~v~~~~--~~~~-~~~p~~~vP~l~~~~~g~~~~l~eS~aI~~   83 (290)
T 1z9h_A           12 RLQLTLYQY-----KTCPFCSKVRAFLDFHALPYQVVEVNPVL--RAEI-KFSSYRKVPILVAQEGESSQQLNDSSVIIS   83 (290)
T ss_dssp             -CEEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTT--CGGG-TTCSCCSSCEEEEEETTEEEEECSHHHHHH
T ss_pred             CCCEEEEeC-----CCChHHHHHHHHHHHcCCCeEEEECChhh--HHHH-HHcCCCCCCEEEECCCCCeEEecCHHHHHH
Confidence            456999999     99999999999999999999999996321  1123 45678899999985  3  57877777766


Q ss_pred             HHh
Q psy221          117 LHQ  119 (205)
Q Consensus       117 l~e  119 (205)
                      ..+
T Consensus        84 yL~   86 (290)
T 1z9h_A           84 ALK   86 (290)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2c3n_A Glutathione S-transferase theta 1; glutathione transferase, polymorphism; 1.5A {Homo sapiens} PDB: 2c3q_A* 2c3t_A

Probab=97.38  E-value=0.00083  Score=55.26  Aligned_cols=72  Identities=10%  Similarity=0.100  Sum_probs=57.8

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ..|++|..     ..||+|.+++-+|+..||+|+.+.++...  ....++.+++...++|.+..||..|.....|.+..
T Consensus         8 ~~~~ly~~-----~~sp~~rkv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~gkVPvL~d~g~~l~ES~aI~~YL   81 (247)
T 2c3n_A            8 MGLELYLD-----LLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDGDFTLTESVAILLYL   81 (247)
T ss_dssp             -CEEEEEC-----TTSHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             cceEEeec-----CCChhHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCcCcEEEECCEEEEcHHHHHHHH
Confidence            46899999     99999999999999999999998887432  23356666777789999999998888877766643

>3q18_A GSTO-2, glutathione S-transferase omega-2; glutathione transferase, dehydroascorbate reductase, reductase; 1.70A {Homo sapiens} PDB: 3q19_A* 3qag_A*

Probab=97.38  E-value=0.00033  Score=56.98  Aligned_cols=72  Identities=10%  Similarity=0.141  Sum_probs=57.4

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLH  118 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~  118 (205)
                      ...++||..     +.||+|.+++-+|+..||+|+.+.|+... ..+++.++....++|.+.. ||..|.....|.+..
T Consensus        21 ~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~-~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   93 (239)
T 3q18_A           21 EGLIRIYSM-----RFCPYSHRTRLVLKAKDIRHEVVNINLRN-KPEWYYTKHPFGHIPVLETSQSQLIYESVIACEYL   93 (239)
T ss_dssp             TTCEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEEBCSSS-CCGGGGGTSTTCCSCEEECTTCCEECSHHHHHHHH
T ss_pred             CCeEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEecCccc-CCHHHHhcCCCCCCCEEEeCCCceeecHHHHHHHH
Confidence            457999999     99999999999999999999999887542 1234555666779999999 888888777666553

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=97.37  E-value=0.0018  Score=45.91  Aligned_cols=57  Identities=9%  Similarity=0.211  Sum_probs=42.5

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ++.|..     +|||+|......|++    +  .+.+..+|++.+++    +.+..+-..+|.+++  +|+.+.
T Consensus        29 lv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~~   93 (115)
T 1thx_A           29 LVYFWA-----SWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPT----TVKKYKVEGVPALRLVKGEQILD   93 (115)
T ss_dssp             EEEEEC-----TTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEC-----CCCHHHHHhHHHHHHHHHHhCCcEEEEEEEcCCCHH----HHHHcCCCceeEEEEEcCCEEEE
Confidence            445666     999999999988754    2  47788888887764    444557778999988  887654

>3m8n_A Possible glutathione S-transferase; PSI-II, structural genomics, protein structure initiative, nysgxrc; 2.04A {Rhodopseudomonas palustris}

Probab=97.37  E-value=0.00064  Score=54.77  Aligned_cols=73  Identities=19%  Similarity=0.194  Sum_probs=57.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~e  119 (205)
                      .++||..     +.||+|.+++-+|+..||+|+.+.|+..  +....++.++....++|.+.+ ||..|.....|.+..+
T Consensus         3 ~~~Ly~~-----~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~   77 (225)
T 3m8n_A            3 LYKLYSM-----QRSGNSYKVRLALALLDAPYRAVEVDILRGESRTPDFLAKNPSGQVPLLETAPGRYLAESNAILWYLA   77 (225)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCGGGTTTSSHHHHTTCTTCCSSEEECSTTCEEECHHHHHHHHH
T ss_pred             ceEEecC-----CCCCCHHHHHHHHHHcCCCeEEEEeCCCCCccCCHHHHHhCCCCCCCEEEeCCCCEEEcHHHHHHHHH
Confidence            4789988     9999999999999999999999988642  222356666777789999997 6788887777666554


Q ss_pred             c
Q psy221          120 S  120 (205)
Q Consensus       120 ~  120 (205)
                      .
T Consensus        78 ~   78 (225)
T 3m8n_A           78 V   78 (225)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2hnl_A Glutathione S-transferase 1; prostaglandin synthase, river BLI onchocerca volvulus, immune modulation; HET: GSH; 2.00A {Onchocerca volvulus}

Probab=97.36  E-value=0.00063  Score=55.10  Aligned_cols=71  Identities=14%  Similarity=0.260  Sum_probs=58.1

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +..++||..     +.||+|.+++-+|+..||+|+.+.++.  +...++.+.....++|.+..||..|.....|.+..
T Consensus        25 m~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~--~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~YL   95 (225)
T 2hnl_A           25 MEKYTLTYF-----NGRGRAEVIRLLFALANVSYEDNRITR--DEWKYLKPRTPFGHVPMLNVSGNVLGESHAIELLL   95 (225)
T ss_dssp             CCCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECH--HHHHHHGGGSSSSCSCEEEETTEEEECHHHHHHHH
T ss_pred             CCCeEEEEc-----CCCCchHHHHHHHHHCCCCeeEEEeCh--hhhHHhccCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            446999998     899999999999999999999998864  22356666767779999999999888877666643

>3ic8_A Uncharacterized GST-like proteinprotein; glutathione, transferase, PSI, MCSG, structural genomics; 2.40A {Pseudomonas syringae PV}

Probab=97.35  E-value=0.00042  Score=59.06  Aligned_cols=71  Identities=13%  Similarity=0.214  Sum_probs=58.3

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHh-CCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYT-SWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~-g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ..++||..     +.||+|.+++-+|+..|++|+.++++... ...++.++. ...++|.+..||..+.....|.+..
T Consensus         2 ~~~~Ly~~-----~~sp~~~kvr~~L~~~gi~ye~~~v~~~~-~~~~~~~~n~P~g~vPvL~~~g~~l~eS~aI~~yL   73 (310)
T 3ic8_A            2 SELILHHY-----PTSLFAEKARLMLGFKGVNWRSVTIPSIM-PKPDLTALTGGYRKTPVLQIGADIYCDTALMARRL   73 (310)
T ss_dssp             CCEEEEEC-----TTCGGGHHHHHHHHHHTCEEEEEECCSSS-CCHHHHHHHSSCCCSCEEEETTEEECSHHHHHHHH
T ss_pred             CeEEEEec-----CCCcHHHHHHHHHHhcCCCcEEEEcCCCC-CcHHHHHhcCCCCceeEEEECCEEEcCHHHHHHHH
Confidence            46899999     99999999999999999999999986532 235666777 7889999999999888877666543

>1r5a_A Glutathione transferase; glutathione S-transferase, GST, GSH, mosquito, detoxification, xenobiotics; HET: GTS; 2.50A {Anopheles cracens} SCOP: a.45.1.1 c.47.1.5

Probab=97.35  E-value=0.0011  Score=53.03  Aligned_cols=71  Identities=17%  Similarity=0.195  Sum_probs=57.2

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .++||..     +.||+|.+++-+|+..||+|+.+.++..  +....++.+.....++|.+..||..|.....|.+..
T Consensus         2 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   74 (218)
T 1r5a_A            2 TTVLYYL-----PASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSYL   74 (218)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEETTEEEECHHHHHHHH
T ss_pred             eEEEEeC-----CCChhHHHHHHHHHHcCCCCeEEecCcccccccCHHHHhhCCCCCcCEEEECCEEEEcHHHHHHHH
Confidence            4789988     8999999999999999999999988753  223356666666778999999998888877666643

>1ljr_A HGST T2-2, glutathione S-transferase; HET: GSH; 3.20A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 2ljr_A 3ljr_A*

Probab=97.35  E-value=0.00074  Score=55.25  Aligned_cols=70  Identities=13%  Similarity=0.106  Sum_probs=57.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++||..     +.||+|.+++-+|+..||+|+.+.++..  +...+++.+++...++|.+..||..|.....|.+..
T Consensus         3 ~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~g~~l~eS~aI~~YL   74 (244)
T 1ljr_A            3 LELFLD-----LVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYL   74 (244)
T ss_dssp             CEEEEC-----TTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             EEEEec-----CCCcchHHHHHHHHHcCCCCeEEEecccccccCCHHHHHhCCCCcCcEEEECCEEEEchHHHHHHH
Confidence            678988     8999999999999999999999988753  233456667766779999999999998887766643

>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}

Probab=97.33  E-value=0.0012  Score=51.21  Aligned_cols=33  Identities=15%  Similarity=0.238  Sum_probs=24.1

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHh----C-CCCeEEEEcc
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRM----H-DVPYDSHDVL   80 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~-gV~~~e~DI~   80 (205)
                      .|++|+.     .+||+|.+....|.+    + +|.+..+++.
T Consensus        25 ~i~~f~d-----~~Cp~C~~~~~~l~~l~~~~~~v~~~~~~~p   62 (175)
T 3gyk_A           25 TVVEFFD-----YNCPYCRRAMAEVQGLVDADPNVRLVYREWP   62 (175)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             EEEEEEC-----CCCccHHHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            4667888     999999998877754    3 3567777653

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=97.32  E-value=0.00082  Score=60.19  Aligned_cols=75  Identities=17%  Similarity=0.296  Sum_probs=59.9

Q ss_pred             hcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCC---eEeechhHHH
Q psy221           39 VKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFING---EFVGGCDILL  115 (205)
Q Consensus        39 ~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G---~~IGG~del~  115 (205)
                      +.+..++||..     +.||+|.+++-+|+..||+|+.+.|+......+++.++....++|.+..+|   ..+.....|.
T Consensus        22 m~~~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~eS~aI~   96 (471)
T 4ags_A           22 MAARALKLYVS-----ATCPFCHRVEIVAREKQVSYDRVAVGLREEMPQWYKQINPRETVPTLEVGNADKRFMFESMLIA   96 (471)
T ss_dssp             ---CCEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCCGGGCCHHHHHHCTTCCSCEEEECSSSCEEEESHHHHH
T ss_pred             cCCCceEEECC-----CCCchHHHHHHHHHHcCCCCEEEEeCCCCCccHHHHhhCCCCccCeEEECCcCeEEEecHHHHH
Confidence            34568999999     999999999999999999999999876443445677777788999999987   7787777666


Q ss_pred             HHH
Q psy221          116 KLH  118 (205)
Q Consensus       116 ~l~  118 (205)
                      +..
T Consensus        97 ~yL   99 (471)
T 4ags_A           97 QYL   99 (471)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>4dej_A Glutathione S-transferase related protein; transferase-like protein, transcription regulation; 2.90A {Idiomarina loihiensis}

Probab=97.32  E-value=0.00063  Score=55.60  Aligned_cols=71  Identities=13%  Similarity=0.119  Sum_probs=58.1

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC-CCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW-PTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~-~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ..+.||..     +.||+|.+++-+|+..||+|+.+.|+.. ...+++.++... .++|.+..||..|.....|.+..
T Consensus        11 ~~~~Ly~~-----~~sp~~~~vr~~L~~~gi~~e~~~v~~~-~~~~~~~~~nP~~g~vPvL~~~g~~l~eS~aI~~YL   82 (231)
T 4dej_A           11 SVMTLYSG-----KDDLKSHQVRLVLAEKGVGVEITYVTDE-STPEDLLQLNPYPEAKPTLVDRELVLYNAQIIMEYL   82 (231)
T ss_dssp             SSCEEEEC-----SSCHHHHHHHHHHHHHTCBCEEEECCSS-CCCHHHHHHCCSSSCCSEEEETTEEEESHHHHHHHH
T ss_pred             ceEEEEcC-----CCChHHHHHHHHHHHcCCCcEEEEcCcc-cCCHHHHHhCCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            45889998     9999999999999999999999998754 223456667777 88999999999888877766653

>3f6d_A Adgstd4-4, glutathione transferase GST1-4; HET: GTX; 1.70A {Anopheles dirus} PDB: 3f63_A* 1jlw_A* 3g7i_A* 3g7j_A*

Probab=97.32  E-value=0.00075  Score=53.84  Aligned_cols=71  Identities=11%  Similarity=0.027  Sum_probs=57.1

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLHQ  119 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~e  119 (205)
                      +.||..     +.||+|.+++-+|+..||+|+.+.++..  +....++.++....++|.+.. ||..|.....|.+..+
T Consensus         1 m~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~   74 (219)
T 3f6d_A            1 MDFYYL-----PGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLNPQHCIPTLVDEDGFVLWESRAIQIYLV   74 (219)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTTTGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHHHH
T ss_pred             CEEEeC-----CCCCchHHHHHHHHHcCCCceEEEccCcccccCCHHHHhhCCCCccCeEEeCCCCEEEcHHHHHHHHH
Confidence            368888     9999999999999999999999988653  233456777777789999999 8988888777666533

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=97.32  E-value=0.0028  Score=44.31  Aligned_cols=60  Identities=22%  Similarity=0.284  Sum_probs=41.9

Q ss_pred             CCcE-EEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           41 KSKV-VVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        41 ~~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ..++ +.|..     +||++|......|++.      .+.+..+|++.++++    .+..+-..+|.+++  +|+.+.
T Consensus        21 ~~~~lv~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~i~~~Pt~~~~~~g~~~~   89 (109)
T 3tco_A           21 NKLVLVDCWA-----EWCAPCHLYEPIYKKVAEKYKGKAVFGRLNVDENQKI----ADKYSVLNIPTTLIFVNGQLVD   89 (109)
T ss_dssp             SSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTCHHH----HHHTTCCSSSEEEEEETTEEEE
T ss_pred             CCeEEEEEEC-----CCCHHHHhhhHHHHHHHHHhCCCceEEEEccccCHHH----HHhcCcccCCEEEEEcCCcEEE
Confidence            3444 44666     9999999999887543      366788888777654    44457778998544  887553

>1k0d_A URE2 protein; nitrate assimilation, structural genomics, gene regulation; HET: GSH; 2.20A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5 PDB: 1jzr_A* 1k0b_A* 1k0c_A* 1k0a_A* 1g6w_A 1g6y_A 1hqo_A

Probab=97.31  E-value=0.0012  Score=54.54  Aligned_cols=72  Identities=10%  Similarity=0.013  Sum_probs=57.9

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee---CCeEeechhHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI---NGEFVGGCDILL  115 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI---~G~~IGG~del~  115 (205)
                      +..+.||..     +.||+|.+++-+|+..||+|+.+.|+..  +....++.++....++|.+..   ||..|.....|.
T Consensus        17 m~~~~Ly~~-----~~~p~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~g~~l~ES~aI~   91 (260)
T 1k0d_A           17 LEGYTLFSH-----RSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAIL   91 (260)
T ss_dssp             SSSEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHH
T ss_pred             CCcEEEEcC-----CCCccHHHHHHHHHHCCCCceEEEecCccccccCHHHHhhCCCCCcCEEEecCCCCeEEECHHHHH
Confidence            457999998     9999999999999999999999888653  233456667766779999998   788888777666


Q ss_pred             HH
Q psy221          116 KL  117 (205)
Q Consensus       116 ~l  117 (205)
                      +.
T Consensus        92 ~Y   93 (260)
T 1k0d_A           92 LH   93 (260)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2gsq_A Squid GST, glutathione S-transferase; squid digestive gland, sigma class; HET: GBI; 2.20A {Ommastrephes sloani} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsq_A*

Probab=97.31  E-value=0.00078  Score=53.16  Aligned_cols=70  Identities=14%  Similarity=0.132  Sum_probs=56.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      ++.||..     +.||+|.+++-+|+..||+|+.+.++.+.  ..++.+.....++|.+..||..|.....|.+..+
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   71 (202)
T 2gsq_A            2 KYTLHYF-----PLMGRAELCRFVLAAHGEEFTDRVVEMAD--WPNLKATMYSNAMPVLDIDGTKMSQSMCIARHLA   71 (202)
T ss_dssp             CEEEEEC-----SSSGGGHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGSGGGSSCEEEETTEEECCHHHHHHHHH
T ss_pred             CcEEEEc-----CCCchhHHHHHHHHHcCCCeeEEEeCHHH--HHhhcccCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            4788988     88999999999999999999999987532  3456666666789999999998888877666543

>4f03_A Glutathione transferase; GST fold; 1.80A {Phanerochaete chrysosporium} PDB: 4g19_A*

Probab=97.30  E-value=0.00068  Score=54.97  Aligned_cols=76  Identities=13%  Similarity=0.184  Sum_probs=52.4

Q ss_pred             CcEEEEEee----CCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHH-----------hCCCCccEEee--C
Q psy221           42 SKVVVFMKG----VPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEY-----------TSWPTIPQVFI--N  104 (205)
Q Consensus        42 ~~VvlYsk~----~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~-----------~g~~tvPqvFI--~  104 (205)
                      .+|++|---    +.+.++||+|.+|+-+|+..||+|+.+.|+... ....+...           +...+||.|..  |
T Consensus         3 ~pi~lYd~~~~~~~~~~~~SP~~~kvr~~L~~kgi~y~~~~v~~~~-~~~~~~~~g~~~~~~~~~~~P~~~VPvL~~~d~   81 (253)
T 4f03_A            3 QPIVFYDIPSNERIKHSPWSPNTWKIRYALNYKGLKYKTEWVEYPD-IAGVVQKLGGKPTEKTPDGRDHYTLPVIYDPNT   81 (253)
T ss_dssp             CCEEEEECCCCGGGTTCCCCHHHHHHHHHHHHHTCCEEEEECCGGG-HHHHHHHHTCCCSEECTTCCEECCSCEEEETTT
T ss_pred             CCeEEeecCCCCCCCCCCcChhHHHHHHHHHHcCCCCEEEEEcccc-chhhhhhcCCCCchhhHhhCCCCccCeEEeCCC
Confidence            469999421    123489999999999999999999999886432 12233222           12357999987  5


Q ss_pred             CeEeechhHHHHHH
Q psy221          105 GEFVGGCDILLKLH  118 (205)
Q Consensus       105 G~~IGG~del~~l~  118 (205)
                      |..|.....|.+..
T Consensus        82 g~~l~ES~aI~~YL   95 (253)
T 4f03_A           82 KKVVEDSAAIAKYL   95 (253)
T ss_dssp             TEEEESHHHHHHHH
T ss_pred             CEEEecHHHHHHHH
Confidence            67887776666543

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=97.28  E-value=0.0032  Score=43.79  Aligned_cols=57  Identities=21%  Similarity=0.319  Sum_probs=40.9

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      -++.|..     +||++|......|++    +  .+.+..+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        21 ~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~   85 (105)
T 1fb6_A           21 VMVDFWA-----PWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG----IATQYNIRSIPTVLFFKNGERK   85 (105)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEE
T ss_pred             EEEEEEC-----CCChHHHHHHHHHHHHHHHhcCceEEEEEcCcchHH----HHHhCCCCcccEEEEEeCCeEE
Confidence            3455666     999999999888854    3  36677778777664    444556778999887  88754

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=97.28  E-value=0.00091  Score=44.46  Aligned_cols=49  Identities=10%  Similarity=0.175  Sum_probs=37.2

Q ss_pred             CCChHHHHHHHHHH----hCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe
Q psy221           55 PRCGFSNAVVQILR----MHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV  108 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~----~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I  108 (205)
                      +||++|+.+...|+    .++..+...+|+ ++    ++.+..|-..+|.+++||+.+
T Consensus         9 ~wC~~C~~~~~~l~~~~~~~~~~~~~~~v~-~~----~~~~~~~v~~~Pt~~~~G~~~   61 (77)
T 1ilo_A            9 TGCANCQMLEKNAREAVKELGIDAEFEKIK-EM----DQILEAGLTALPGLAVDGELK   61 (77)
T ss_dssp             SSSSTTHHHHHHHHHHHHHTTCCEEEEEEC-SH----HHHHHHTCSSSSCEEETTEEE
T ss_pred             CCChhHHHHHHHHHHHHHHcCCceEEEEec-CH----HHHHHCCCCcCCEEEECCEEE
Confidence            69999999887764    456667777776 33    445556888999999999875

>3ubk_A Glutathione transferase; GSH binding; 1.95A {Leptospira interrogans serovar lai} PDB: 3ubl_A*

Probab=97.27  E-value=0.0005  Score=56.24  Aligned_cols=69  Identities=12%  Similarity=0.197  Sum_probs=56.3

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .++||..     +.||+|.+++-+|+..||+|+.+.|..+  ...++.++....++|.+..+|..|.....|.+..
T Consensus         3 ~~~Ly~~-----~~sp~~~~v~~~L~~~gi~ye~~~v~~~--~~~~~~~~nP~g~vPvL~~~~~~l~eS~aI~~YL   71 (242)
T 3ubk_A            3 MIKLHGA-----SISNYVNKVKLGILEKGLEYEQIRIAPS--QEEDFLKISPMGKIPVLEMDGKFIFESGAILEFL   71 (242)
T ss_dssp             CEEEESC-----TTCHHHHHHHHHHHHHTCCEEEECCCCC--CCHHHHTTSTTCCSCEEEETTEEECCHHHHHHHH
T ss_pred             eEEEEeC-----CCChHHHHHHHHHHHcCCCcEEEecCCc--cCHHHHhcCCCCCcCeEEECCceEecHHHHHHHH
Confidence            4789988     9999999999999999999999998543  2356667777779999999998787776665543

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=97.25  E-value=0.0015  Score=46.02  Aligned_cols=60  Identities=18%  Similarity=0.302  Sum_probs=41.7

Q ss_pred             CCcE-EEEEeeCCCCCCChHHHHHHHHHHhC---------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           41 KSKV-VVFMKGVPEAPRCGFSNAVVQILRMH---------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        41 ~~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~---------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ...+ +.|..     +||++|+.....|.+.         ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        21 ~~~~lv~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~~~   91 (111)
T 3uvt_A           21 EGITFIKFYA-----PWCGHCKTLAPTWEELSKKEFPGLAGVKIAEVDCTAERN----ICSKYSVRGYPTLLLFRGGKKV   91 (111)
T ss_dssp             SSEEEEEEEC-----SSCHHHHHHHHHHHHHHTCCCCC-CCEEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCcEEEEEEC-----CCChhHHHhhHHHHHHHHHhhccCCceEEEEEeccccHh----HHHhcCCCcccEEEEEeCCcEE
Confidence            4444 44666     9999999999888643         34566777776654    445557778998876  88654


Q ss_pred             e
Q psy221          109 G  109 (205)
Q Consensus       109 G  109 (205)
                      .
T Consensus        92 ~   92 (111)
T 3uvt_A           92 S   92 (111)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=97.25  E-value=0.002  Score=45.07  Aligned_cols=56  Identities=21%  Similarity=0.339  Sum_probs=41.5

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ++.|..     +||++|......|++    +  .+.+..+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        21 ~v~f~~-----~~C~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~   84 (105)
T 1nsw_A           21 LVDFWA-----AWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPE----TTSQFGIMSIPTLILFKGGRPV   84 (105)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHSTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEE
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHhcCCcEEEEEECcCCHH----HHHHcCCccccEEEEEeCCeEE
Confidence            445666     999999999888764    3  36778888877764    444557788999988  88754

>2wb9_A Glutathione transferase sigma class; thioredoxin fold; HET: GSH; 1.59A {Fasciola hepatica} PDB: 2wdu_A*

Probab=97.25  E-value=0.0011  Score=52.60  Aligned_cols=71  Identities=14%  Similarity=0.146  Sum_probs=57.0

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCC-----eEeechhHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFING-----EFVGGCDILL  115 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G-----~~IGG~del~  115 (205)
                      +..++||..     +.||+|.+++-+|+..||+|+.+.++.+.  ..++...+...++|.+..+|     ..|.....|.
T Consensus         3 m~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~   75 (211)
T 2wb9_A            3 KQHFKLWYF-----QFRGRAEPIRLLLTCAGVKFEDYQFTMDQ--WPTIKPTLPGGRVPLLDVTGPDGKLRRYQESMAIA   75 (211)
T ss_dssp             CCEEEEEEE-----SSCGGGHHHHHHHHHTTCCCEEEEECTTT--HHHHGGGSGGGCSCEEEEECTTSCEEEEESHHHHH
T ss_pred             CCceEEEEe-----CCCCchHHHHHHHHHcCCCceEEEechhh--HHHhCcCCCCCCCCEEEECCCCccceeecCHHHHH
Confidence            346899988     89999999999999999999999987432  25566666667899999988     8888777666


Q ss_pred             HHH
Q psy221          116 KLH  118 (205)
Q Consensus       116 ~l~  118 (205)
                      +..
T Consensus        76 ~yL   78 (211)
T 2wb9_A           76 RLL   78 (211)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>3ibh_A GST-II, saccharomyces cerevisiae GTT2; glutathione S-transferase, transferase; HET: GSH; 2.10A {Saccharomyces cerevisiae} PDB: 3erf_A* 3erg_A*

Probab=97.25  E-value=0.00083  Score=53.88  Aligned_cols=72  Identities=13%  Similarity=0.174  Sum_probs=56.8

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCC--CeEEEEccCC--HhHHHHHHHHhCCCCccEEe-eCCeEeechhHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDV--PYDSHDVLKD--ESIRNGIKEYTSWPTIPQVF-INGEFVGGCDILLK  116 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV--~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvF-I~G~~IGG~del~~  116 (205)
                      .+++||..     +.||+|.+++-+|+..|+  +|+.++|+..  +....++.++....++|.+. .||..|.....|.+
T Consensus        17 ~~~~Ly~~-----~~sp~~~~v~~~L~~~gi~~~~~~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~   91 (233)
T 3ibh_A           17 QKMIIYDT-----PAGPYPARVRIALAEKNMLSSVQFVRINLWKGEHKKPEFLAKNYSGTVPVLELDDGTLIAECTAITE   91 (233)
T ss_dssp             --CEEEEC-----TTCHHHHHHHHHHHHTTCGGGCEEEECCGGGTGGGSHHHHHHCTTCCSCEEECTTCCEEESHHHHHH
T ss_pred             cceEEecC-----CCCCccHHHHHHHHhcCCCCCceEEEeccccccccChHHhccCCCCccceEEecCCeEEecHHHHHH
Confidence            46899999     999999999999999999  9998888643  23345667777778999999 68888887776665


Q ss_pred             HH
Q psy221          117 LH  118 (205)
Q Consensus       117 l~  118 (205)
                      ..
T Consensus        92 yL   93 (233)
T 3ibh_A           92 YI   93 (233)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=97.24  E-value=0.0006  Score=51.07  Aligned_cols=54  Identities=19%  Similarity=0.234  Sum_probs=40.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee----CCe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI----NGE  106 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI----~G~  106 (205)
                      |+.|..     +||++|+++...|+++    ++.+..+|++.+++    +.+..+-..+|.+++    +|+
T Consensus        44 vv~F~a-----~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~~~g~  105 (133)
T 3cxg_A           44 VIKFGA-----VWCKPCNKIKEYFKNQLNYYYVTLVDIDVDIHPK----LNDQHNIKALPTFEFYFNLNNE  105 (133)
T ss_dssp             EEEEEC-----TTCHHHHHTHHHHHGGGGTEECEEEEEETTTCHH----HHHHTTCCSSSEEEEEEEETTE
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHhcCEEEEEEeccchHH----HHHhcCCCCCCEEEEEEecCCC
Confidence            445666     9999999999999765    35667777776654    445567788999865    887

>3m0f_A Uncharacterized protein GST_N; PSI-2, NYSGXRC, glutathione, structural genomics, protein structure initiative; HET: GSH; 1.60A {Pseudomonas fluorescens} PDB: 3lxt_A*

Probab=97.24  E-value=0.00075  Score=53.60  Aligned_cols=69  Identities=12%  Similarity=0.191  Sum_probs=56.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEe-eCCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF-INGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF-I~G~~IGG~del~~l~  118 (205)
                      +.||..     +.||+|.+++-+|+..||+|+.+.|+.... .+++.++....++|.+. .||..|.....|.+..
T Consensus         3 ~~Ly~~-----~~sp~~~~v~~~l~~~gi~~e~~~v~~~~~-~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   72 (213)
T 3m0f_A            3 LKLIGM-----LDSPYVRRVAISLKSLGLPFEHHSLSVFST-FEQFKAINPVVKAPTLVCEGGEVLMDSSLIIDYL   72 (213)
T ss_dssp             CEEESC-----TTSHHHHHHHHHHHHHTCCCEEECCCTTTT-HHHHHHHCTTCCSSEEECTTCCEEESHHHHHHHH
T ss_pred             EEEecC-----CCCCcHHHHHHHHHHCCCCcEEEEecCCCC-cHHHHhcCCCCCcCeEEeCCCcEEEcHHHHHHHH
Confidence            678888     899999999999999999999998875433 46777777777999998 6888888777666543

>3ein_A GST class-theta, glutathione S-transferase 1-1; delta-class GST; HET: GSH; 1.13A {Drosophila melanogaster} PDB: 3mak_A* 3f6f_A 3gh6_A* 1jlv_A*

Probab=97.23  E-value=0.0009  Score=52.96  Aligned_cols=69  Identities=14%  Similarity=0.132  Sum_probs=56.1

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +.||..     +.||+|.+++-+|+..||+|+.+.|+..  +....++.++....++|.+..||..+.....|.+.
T Consensus         2 ~~Ly~~-----~~s~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~y   72 (209)
T 3ein_A            2 VDFYYL-----PGSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINPQHTIPTLVDNGFALWESRAIQVY   72 (209)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEecC-----CCCccHHHHHHHHHHcCCCcEEEEcccccCCcCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            367888     8999999999999999999999888643  23345677777777999999999988887776654

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.19  E-value=0.0014  Score=47.86  Aligned_cols=63  Identities=16%  Similarity=0.299  Sum_probs=46.0

Q ss_pred             HHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CC
Q psy221           35 IDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NG  105 (205)
Q Consensus        35 l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G  105 (205)
                      ++++++.+-++.|..     +||++|++....|.+.       ++.+..+|++.+++    +.+..+-..+|.+++  +|
T Consensus        17 f~~~~~~~vlv~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G   87 (126)
T 1x5e_A           17 WRELLEGDWMIEFYA-----PWCPACQNLQPEWESFAEWGEDLEVNIAKVDVTEQPG----LSGRFIINALPTIYHCKDG   87 (126)
T ss_dssp             HHHHTSSEEEEEEEC-----SSCHHHHHHHHHHHHHHHHHGGGTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETT
T ss_pred             HHHHhCCCEEEEEEC-----CCCHHHHHHhHHHHHHHHHhccCCeEEEEEECcCCHH----HHHHcCCcccCEEEEEeCC
Confidence            345555555556666     9999999999887642       68888899887764    444456778999877  88


Q ss_pred             e
Q psy221          106 E  106 (205)
Q Consensus       106 ~  106 (205)
                      +
T Consensus        88 ~   88 (126)
T 1x5e_A           88 E   88 (126)
T ss_dssp             E
T ss_pred             e
Confidence            6

>4hz2_A Glutathione S-transferase domain; glutathione,enzyme function initiative; HET: GSH; 1.50A {Xanthobacter autotrophicus}

Probab=97.19  E-value=0.0012  Score=53.50  Aligned_cols=73  Identities=11%  Similarity=0.136  Sum_probs=58.7

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEe-eCCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVF-INGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvF-I~G~~IGG~del~~l~e  119 (205)
                      .+.||..     +.||+|.+++-+|+..||+|+.+.|+..  +....++.++....++|.+. .||..|.....|.+..+
T Consensus        22 m~~Ly~~-----~~sp~~~~vr~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~~g~~l~eS~aI~~yL~   96 (230)
T 4hz2_A           22 SMRIYGM-----NGSGNCWKAAQILSLTGHDFEWVETSSGAAGTRSADFLALNAIGKVPVVVLDDGTALRESNAILLHFA   96 (230)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSSTTTTTSHHHHHHCTTCCSCEEECTTSCEEECHHHHHHHHH
T ss_pred             hheeeCC-----CCCccHHHHHHHHHHcCCCceEEEecCCCCccCCHHHHhhCCCCCCCEEEecCCEEeeCHHHHHHHHh
Confidence            4789988     9999999999999999999999988643  23345677777778999999 78888888777666544


Q ss_pred             c
Q psy221          120 S  120 (205)
Q Consensus       120 ~  120 (205)
                      +
T Consensus        97 ~   97 (230)
T 4hz2_A           97 E   97 (230)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=97.19  E-value=0.001  Score=47.69  Aligned_cols=61  Identities=23%  Similarity=0.388  Sum_probs=44.5

Q ss_pred             cCCcEEE-EEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           40 KKSKVVV-FMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        40 ~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      +...++| |..     +||++|.+....|++    +  ++.+..+|++.++++    .+..+-..+|.+++  +|+.+.
T Consensus        16 ~~~~~lv~f~a-----~wC~~C~~~~~~l~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~G~~~~   85 (112)
T 2voc_A           16 SEGVVLADFWA-----PWCGPSKMIAPVLEELDQEMGDKLKIVKIDVDENQET----AGKYGVMSIPTLLVLKDGEVVE   85 (112)
T ss_dssp             SSSEEEEEEEC-----TTBGGGGGHHHHHHHHHHHHTTTCEEEEEETTTCCSH----HHHTTCCSBSEEEEEETTEEEE
T ss_pred             CCCEEEEEEEC-----CCCHHHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHH----HHHcCCCcccEEEEEeCCEEEE
Confidence            4445544 555     999999999888764    2  578888898877653    34457778999988  998653

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=97.18  E-value=0.0042  Score=46.25  Aligned_cols=69  Identities=13%  Similarity=0.086  Sum_probs=46.1

Q ss_pred             HHHHhcCCcEEE-EEeeCCCCCCChHHHHHHHHHHh----CCCCeEEEEccCCH-----hHHHHHHHHhCCCCccEEee-
Q psy221           35 IDEMVKKSKVVV-FMKGVPEAPRCGFSNAVVQILRM----HDVPYDSHDVLKDE-----SIRNGIKEYTSWPTIPQVFI-  103 (205)
Q Consensus        35 l~~~~~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~----~gV~~~e~DI~~d~-----~~~~eL~~~~g~~tvPqvFI-  103 (205)
                      +++.++. +|+| |..     +||++|+.....|++    +++.+..+|++.+.     +...++.+..+-..+|.+++ 
T Consensus        26 ~~~~~~~-~vlv~F~a-----~wC~~C~~~~p~l~~l~~~~~v~~~~vd~~~~~~~~~~d~~~~l~~~~~v~~~Pt~~~~   99 (135)
T 3emx_A           26 FRQLLQG-DAILAVYS-----KTCPHCHRDWPQLIQASKEVDVPIVMFIWGSLIGERELSAARLEMNKAGVEGTPTLVFY   99 (135)
T ss_dssp             HHHHHTS-SEEEEEEE-----TTCHHHHHHHHHHHHHHTTCCSCEEEEEECTTCCHHHHHHHHHHHHHHTCCSSSEEEEE
T ss_pred             HHHHhCC-cEEEEEEC-----CcCHhhhHhChhHHHHHHHCCCEEEEEECCCchhhhhhhhhHHHHHHcCCceeCeEEEE
Confidence            3444545 5555 555     999999999888754    46778888885432     22345555668888998766 


Q ss_pred             -CCeEee
Q psy221          104 -NGEFVG  109 (205)
Q Consensus       104 -~G~~IG  109 (205)
                       +|+.+.
T Consensus       100 ~~G~~v~  106 (135)
T 3emx_A          100 KEGRIVD  106 (135)
T ss_dssp             ETTEEEE
T ss_pred             cCCEEEE
Confidence             676543

>3niv_A Glutathione S-transferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.30A {Legionella pneumophila subsp}

Probab=97.18  E-value=0.00098  Score=53.35  Aligned_cols=70  Identities=13%  Similarity=0.189  Sum_probs=47.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH----hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE----SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~----~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +.||..     +.||+|.+++-+|+..|++|+.+.|+...    ....++.++....++|.+..||..|.....|.+..
T Consensus         3 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL   76 (222)
T 3niv_A            3 LILYDY-----FRSTACYRVRIALNLKKIAYEKIEVHLVNNGGEQHSLQYHQINPQELVPSLDINGQILSQSMAIIDYL   76 (222)
T ss_dssp             -CEEEC-----TTCHHHHHHHHHHHHTTCCCCEEECCC-------------------CCSEEEETTEEEECHHHHHHHH
T ss_pred             EEEEcC-----CCCcHHHHHHHHHHHcCCCcEEEEeccccccccccCHHHHhcCCCCCcCEEEECCEEeecHHHHHHHH
Confidence            678888     89999999999999999999998887533    23456666666779999999999888877766653

>4glt_A Glutathione S-transferase-like protein; structural genomics, function initiative, EFI; HET: GSH; 2.20A {Methylobacillus flagellatus}

Probab=97.17  E-value=0.00038  Score=56.50  Aligned_cols=70  Identities=10%  Similarity=0.197  Sum_probs=53.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLHQ  119 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~e  119 (205)
                      .-||..     +.||+|.+|+-+|...||+|+.+.|+.... .+++.+++-..+||.+.. ||..|-....|.+..+
T Consensus        23 MKLy~~-----~~SP~~~rVr~~L~e~gi~~e~~~v~~~~~-~~~~~~~nP~gkVPvL~~~dG~~l~ES~aI~~YL~   93 (225)
T 4glt_A           23 MKLLYS-----NTSPYARKVRVVAAEKRIDVDMVLVVLADP-ECPVADHNPLGKIPVLILPDGESLYDSRVIVEYLD   93 (225)
T ss_dssp             CEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECCTTCS-SSCGGGTCTTCCSCEEECTTSCEECSHHHHHHHHH
T ss_pred             ceEecC-----CCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-CHHHHHhCCCCCCCEEEeCCCCEEeehHHHHHHHH
Confidence            358888     999999999999999999999998864321 124555655678999987 6788877776666543

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=97.17  E-value=0.0034  Score=45.72  Aligned_cols=65  Identities=18%  Similarity=0.301  Sum_probs=44.8

Q ss_pred             HHHHhcC-CcEE-EEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--
Q psy221           35 IDEMVKK-SKVV-VFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--  103 (205)
Q Consensus        35 l~~~~~~-~~Vv-lYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--  103 (205)
                      ++++++. ..++ .|..     +||++|..+...|++.       ++.+..+|++.++++    .+..+-..+|.+++  
T Consensus        26 f~~~l~~~k~vvv~f~a-----~~C~~C~~~~~~l~~l~~~~~~~~v~~~~vd~d~~~~~----~~~~~v~~~Pt~~~~~   96 (121)
T 2j23_A           26 FKQVTGGDKVVVIDFWA-----TWCGPCKMIGPVFEKISDTPAGDKVGFYKVDVDEQSQI----AQEVGIRAMPTFVFFK   96 (121)
T ss_dssp             HHHHHSSSSCEEEEEEC-----TTCSTHHHHHHHHHHHHTSTHHHHSEEEEEETTTCHHH----HHHHTCCSSSEEEEEE
T ss_pred             HHHHHcCCCEEEEEEEC-----CCCHhHHHHHHHHHHHHHHCcCCcEEEEEEECcCCHHH----HHHcCCCcccEEEEEE
Confidence            3444443 3444 4555     9999999999988753       277888888877654    34446678998877  


Q ss_pred             CCeEe
Q psy221          104 NGEFV  108 (205)
Q Consensus       104 ~G~~I  108 (205)
                      +|+.+
T Consensus        97 ~G~~~  101 (121)
T 2j23_A           97 NGQKI  101 (121)
T ss_dssp             TTEEE
T ss_pred             CCeEE
Confidence            88764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=97.17  E-value=0.0023  Score=46.42  Aligned_cols=56  Identities=23%  Similarity=0.313  Sum_probs=41.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      |+.|..     +||++|++....|++    +  ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        35 lv~f~a-----~~C~~C~~~~~~l~~~~~~~~~~v~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~~   98 (119)
T 1w4v_A           35 VVDFHA-----QWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHTD----LAIEYEVSAVPTVLAMKNGDVV   98 (119)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHTTTSSEEEEEETTTTHH----HHHHTTCCSSSEEEEEETTEEE
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCCCCHH----HHHHcCCCcccEEEEEeCCcEE
Confidence            444656     999999999888754    2  46788888877664    445567778999988  88754

>3vk9_A Glutathione S-transferase delta; glutathione binding; 2.00A {Bombyx mori}

Probab=97.17  E-value=0.0016  Score=52.29  Aligned_cols=70  Identities=11%  Similarity=0.141  Sum_probs=56.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +.||..     +.+|+|.+|+-+|+..||+|+.+.|+.  .+....++.++.-..++|.+..||..|-....|.+..
T Consensus         3 mkLY~~-----~~S~~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~g~~l~eS~aI~~YL   74 (216)
T 3vk9_A            3 IDLYYV-----PGSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLNPQHTVPTLVDDGLSIWESRAIITYL   74 (216)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEECCHHHHHHHH
T ss_pred             EEEEeC-----CCChhHHHHHHHHHHcCCCCEEEEeCCCCCccCCHHHHHhCCCCccceEecCCceeechHHHHHHH
Confidence            679988     999999999999999999999887753  3344567777776778999999999888777666653

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=97.16  E-value=0.001  Score=47.05  Aligned_cols=58  Identities=17%  Similarity=0.197  Sum_probs=37.3

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      .+|+| |..     +||++|+.+...|++.     ++.+..+|++.++++.    +..+-..+|.+++  +|+.+
T Consensus        19 ~~vlv~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~~~~~~l~----~~~~v~~~Pt~~~~~~G~~~   84 (105)
T 4euy_A           19 QLVLLFIKT-----ENCGVCDVMLRKVNYVLENYNYVEKIEILLQDMQEIA----GRYAVFTGPTVLLFYNGKEI   84 (105)
T ss_dssp             SEEEEEEEE-----SSCHHHHHHHHHHHHHHHTCTTEEEEEEEECCC-------------CCCCEEEEEETTEEE
T ss_pred             CCEEEEEeC-----CCCcchHHHHHHHHHHHHHcCCceEEEEECCCCHHHH----HhcCCCCCCEEEEEeCCeEE
Confidence            34444 666     9999999999888653     5677888888877543    3345678898755  88776

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=97.14  E-value=0.0028  Score=46.18  Aligned_cols=52  Identities=29%  Similarity=0.417  Sum_probs=39.4

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHh-----CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRM-----HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~-----~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      -++.|..     +||++|......|.+     .++.+..+|++.+++    +.+..+-..+|.+++
T Consensus        26 vlv~f~a-----~wC~~C~~~~~~l~~l~~~~~~v~~~~vd~~~~~~----~~~~~~i~~~Pt~~~   82 (118)
T 2f51_A           26 VLVDFFA-----TWCGPCQRLGQILPSIAEANKDVTFIKVDVDKNGN----AADAYGVSSIPALFF   82 (118)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEE
T ss_pred             EEEEEEC-----CCCHHHHHHHHHHHHHHHHCCCeEEEEEECCCCHH----HHHhcCCCCCCEEEE
Confidence            3445666     999999999888865     378889999987764    444557778999866

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=97.13  E-value=0.003  Score=44.77  Aligned_cols=56  Identities=16%  Similarity=0.253  Sum_probs=40.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ++.|..     +||++|+.....|++    +  .+.+..+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        27 vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~G~~~   90 (112)
T 1t00_A           27 LVDFWA-----AWCGPCRQIAPSLEAIAAEYGDKIEIVKLNIDENPG----TAAKYGVMSIPTLNVYQGGEVA   90 (112)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEE
T ss_pred             EEEEEC-----CCCHhHHhcCHHHHHHHHHhcCCeEEEEEEcCCCHH----HHHhCCCCcccEEEEEeCCEEE
Confidence            455666     999999999887754    3  46778888877764    444557778999877  88754

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=97.13  E-value=0.0019  Score=45.44  Aligned_cols=56  Identities=20%  Similarity=0.325  Sum_probs=41.0

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ++.|..     +||++|......|++    +  ++.+..+|++.++++    .+..+-..+|.+++  +|+.+
T Consensus        24 ~v~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~v~~~Pt~~~~~~G~~~   87 (108)
T 2trx_A           24 LVDFWA-----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVA   87 (108)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTTH----HHHTTCCSSSEEEEEETTEEE
T ss_pred             EEEEEC-----CCCHhHHHHHHHHHHHHHHhCCCcEEEEEECCCCHHH----HHHcCCcccCEEEEEeCCEEE
Confidence            344666     999999999988764    3  366778888777654    34457778999988  88764

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=97.12  E-value=0.0032  Score=46.62  Aligned_cols=71  Identities=17%  Similarity=0.193  Sum_probs=47.4

Q ss_pred             hHHHHHHHHHh-cCCcEE-EEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221           29 TDVQKSIDEMV-KKSKVV-VFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV  101 (205)
Q Consensus        29 ~~~~~~l~~~~-~~~~Vv-lYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv  101 (205)
                      ++..+.+.... +...|+ .|..     +||++|.+....|+++     ++.+..+|++.+++    +.+..+-..+|.+
T Consensus        33 ~~~~~~~~~~~~~~k~vvv~f~a-----~wC~~C~~~~~~l~~l~~~~~~v~~~~v~~~~~~~----~~~~~~v~~~Pt~  103 (139)
T 3d22_A           33 ERWDQKLSEASRDGKIVLANFSA-----RWCGPSRQIAPYYIELSENYPSLMFLVIDVDELSD----FSASWEIKATPTF  103 (139)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHH----HHHHTTCCEESEE
T ss_pred             HHHHHHHHHHhhcCCEEEEEEEC-----CCCHHHHHHHHHHHHHHHHCCCCEEEEEeCcccHH----HHHHcCCCcccEE
Confidence            34444444332 244454 4556     9999999999888653     58888889887764    4445577789987


Q ss_pred             ee--CCeEe
Q psy221          102 FI--NGEFV  108 (205)
Q Consensus       102 FI--~G~~I  108 (205)
                      ++  +|+.+
T Consensus       104 ~~~~~G~~~  112 (139)
T 3d22_A          104 FFLRDGQQV  112 (139)
T ss_dssp             EEEETTEEE
T ss_pred             EEEcCCeEE
Confidence            65  77654

>1wou_A Thioredoxin -related protein, 14 kDa; electron transport; 1.80A {Homo sapiens} SCOP: c.47.1.16 PDB: 1v9w_A

Probab=97.12  E-value=0.0025  Score=46.77  Aligned_cols=52  Identities=8%  Similarity=0.082  Sum_probs=35.9

Q ss_pred             CChHHHHHHHHHHh----C--CCCeEEEEc-------cCCHhHHHHHHHHhCCCCccEEee--CCeEeech
Q psy221           56 RCGFSNAVVQILRM----H--DVPYDSHDV-------LKDESIRNGIKEYTSWPTIPQVFI--NGEFVGGC  111 (205)
Q Consensus        56 ~Cp~C~~ak~lL~~----~--gV~~~e~DI-------~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IGG~  111 (205)
                      |||+|......|++    +  ++.+..+|+       +.+++    +.+..+-..+|.+++  ++..+.|.
T Consensus        42 wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~~~d~~~~----~~~~~~i~~~Pt~~~~~~~~~~~g~  108 (123)
T 1wou_A           42 WCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNND----FRKNLKVTAVPTLLKYGTPQKLVES  108 (123)
T ss_dssp             SCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCH----HHHHHCCCSSSEEEETTSSCEEEGG
T ss_pred             cCHHHHHhhHHHHHHHHHcCCCcEEEEEECCCchhhhchhHH----HHHHCCCCeeCEEEEEcCCceEecc
Confidence            99999999998865    2  567778888       34443    344467788999966  34444444

>3r2q_A Uncharacterized GST-like protein YIBF; transferase, glutathione; HET: GSH; 1.05A {Escherichia coli}

Probab=97.11  E-value=0.00042  Score=54.43  Aligned_cols=70  Identities=13%  Similarity=0.210  Sum_probs=53.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEe-eCCeEeechhHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF-INGEFVGGCDILLKLHQ  119 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF-I~G~~IGG~del~~l~e  119 (205)
                      +.||..     +.||+|.+++-+|+..||+|+.+.++.. ...+++.++....++|.+. .||..|.....|.+..+
T Consensus         1 m~Ly~~-----~~sp~~~~v~~~l~~~gi~~e~~~v~~~-~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~   71 (202)
T 3r2q_A            1 MKLVGS-----YTSPFVRKLSILLLEKGITFEFINELPY-NADNGVAQFNPLGKVPVLVTEEGECWFDSPIIAEYIE   71 (202)
T ss_dssp             CEEEEC-----SSCHHHHHHHHHHHHTTCCCEEEECCTT-SSSCSCTTTCTTCCSCEEECTTSCEECSHHHHHHHHH
T ss_pred             CEEEeC-----CCCcHHHHHHHHHHHcCCCCeEEEecCC-CCcHHHHHhCCCCCcCeEEecCCcEEecHHHHHHHHH
Confidence            367888     8999999999999999999999988643 1123344555667899999 68888877776665543

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=97.11  E-value=0.0031  Score=45.17  Aligned_cols=57  Identities=23%  Similarity=0.347  Sum_probs=42.3

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ++.|..     +||++|......|++    +  ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+.
T Consensus        34 lv~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~i~~~Pt~~~~~~g~~~~   98 (121)
T 2i1u_A           34 LVDFWA-----TWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPE----TARNFQVVSIPTLILFKDGQPVK   98 (121)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHhcCCCcCCEEEEEECCEEEE
Confidence            455666     999999999988864    2  47788888887764    444557778999987  887643

>1vf1_A Glutathione S-transferase 3; detoxification; HET: GSH; 1.77A {Gallus gallus} PDB: 1vf2_A* 1vf3_A* 1vf4_A

Probab=97.10  E-value=0.0026  Score=51.42  Aligned_cols=72  Identities=15%  Similarity=0.170  Sum_probs=56.7

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHH--hCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEY--TSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~--~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      ..+.||..     +.||+|.+++-+|+..||+|+.+.++..+. ..++...  ....++|.+..||..|.....|.+..+
T Consensus         3 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~   76 (229)
T 1vf1_A            3 AKPVLYYF-----NGRGKMESIRWLLAAAGVEFEEVFLETREQ-YEKLLQSGILMFQQVPMVEIDGMKLVQTRAILNYIA   76 (229)
T ss_dssp             CCCEEEEC-----SSCTTTHHHHHHHHHTTCCCEEEECCSHHH-HHHHHHHTCSTTSCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CCeEEEEe-----CCCchhHHHHHHHHHcCCCCeeEecCcHHH-HHHHHHhcCCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence            35788987     889999999999999999999999874333 2445555  556789999999998888777666543

>1t3b_A Thiol:disulfide interchange protein DSBC; oxidoreductase, protein disulfide isomerase, protein folding, redox protein; 2.50A {Haemophilus influenzae} SCOP: c.47.1.9 d.17.3.1

Probab=97.09  E-value=0.00073  Score=54.99  Aligned_cols=64  Identities=19%  Similarity=0.312  Sum_probs=44.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC---CCCeEEEEccC---CHh--------------------------------
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH---DVPYDSHDVLK---DES--------------------------------   84 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~---gV~~~e~DI~~---d~~--------------------------------   84 (205)
                      .|++|+.     ++||+|++....|+++   +|.+..++...   ++.                                
T Consensus        89 ~vv~F~d-----~~Cp~C~~~~~~l~~~~~~~v~v~~~~~p~~~~~~~s~~~a~~~~~a~d~~~a~~~~~~~~~~~~~~~  163 (211)
T 1t3b_A           89 VVTVFMD-----ITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT  163 (211)
T ss_dssp             EEEEEEC-----TTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred             EEEEEEC-----CCCHhHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhCcCHHHHHHHHHcCCCCChHHH
Confidence            4677888     9999999988877654   67766665431   110                                


Q ss_pred             -----HHHHHHHHhCCCCccEEee-CCeEeech
Q psy221           85 -----IRNGIKEYTSWPTIPQVFI-NGEFVGGC  111 (205)
Q Consensus        85 -----~~~eL~~~~g~~tvPqvFI-~G~~IGG~  111 (205)
                           ...++.+..|-..+|.+++ ||+.+.|+
T Consensus       164 ~~~v~~~~~l~~~~gV~gTPt~vi~nG~~~~G~  196 (211)
T 1t3b_A          164 PNIVKKHYELGIQFGVRGTPSIVTSTGELIGGY  196 (211)
T ss_dssp             SSHHHHHHHHHHHHTCCSSCEEECTTSCCCCSC
T ss_pred             HHHHHHHHHHHHHcCCCcCCEEEEeCCEEecCC
Confidence                 1123334458889999999 99988776

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=97.09  E-value=0.0016  Score=52.46  Aligned_cols=53  Identities=17%  Similarity=0.318  Sum_probs=42.3

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE  106 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~  106 (205)
                      +.|..     +||++|..+...|++.     ++.+..+|++.+++    +.+..+-..+|.++++|+
T Consensus       141 v~F~a-----~wC~~C~~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~G~  198 (229)
T 2ywm_A          141 WVFVT-----TSCGYCPSAAVMAWDFALANDYITSKVIDASENQD----LAEQFQVVGVPKIVINKG  198 (229)
T ss_dssp             EEEEC-----TTCTTHHHHHHHHHHHHHHCTTEEEEEEEGGGCHH----HHHHTTCCSSSEEEEGGG
T ss_pred             EEEEC-----CCCcchHHHHHHHHHHHHHCCCeEEEEEECCCCHH----HHHHcCCcccCEEEECCE
Confidence            34888     9999999999888754     57788888887764    444567788999999987

>1k3y_A GSTA1-1, glutathione S-transferase A1; S-hexyl glutatione, water structu transferase; HET: GTX; 1.30A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1gsf_A* 1guh_A* 1gsd_A* 1k3o_A 1k3l_A* 1pl1_A* 1pkz_A 1pkw_A* 2r6k_A* 1gse_A* 3u6v_A 1usb_A* 1ydk_A* 3q74_A 3ktl_A* 1pl2_A* 2r3x_A* 1xwg_A 3l0h_A* 1ags_A* ...

Probab=97.09  E-value=0.0022  Score=51.43  Aligned_cols=71  Identities=14%  Similarity=0.150  Sum_probs=55.9

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHH--hCCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEY--TSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~--~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ..++||..     +.||+|.+++-+|+..||+|+.+.++..+. ..++...  ....++|.+..||..|.....|.+..
T Consensus         2 ~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vPvL~~~g~~l~eS~aI~~yL   74 (221)
T 1k3y_A            2 EKPKLHYF-----NARGRMESTRWLLAAAGVEFEEKFIKSAED-LDKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNYI   74 (221)
T ss_dssp             CCCEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEECSHHH-HHHHHHTTCCTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCcEEEEe-----CCCchhHHHHHHHHHcCCCceEEEeCchhH-HHHHhhhcCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            34688888     889999999999999999999999874333 2445555  55668999999999888877766654

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.09  E-value=0.0043  Score=45.60  Aligned_cols=71  Identities=20%  Similarity=0.243  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHhc-CCcEEE-EEeeCCCCCCChHHHHHHHHHH--h------CCCCeEEEEc---cCCHhHHHHHHHHhCC
Q psy221           29 TDVQKSIDEMVK-KSKVVV-FMKGVPEAPRCGFSNAVVQILR--M------HDVPYDSHDV---LKDESIRNGIKEYTSW   95 (205)
Q Consensus        29 ~~~~~~l~~~~~-~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~--~------~gV~~~e~DI---~~d~~~~~eL~~~~g~   95 (205)
                      .++++.+..... ..+|+| |..     +||++|+.....|.  +      .++.+..+|+   +.++    ++.+..+-
T Consensus        16 ~~~~~~~~~~~~~~k~vlv~f~a-----~wC~~C~~~~~~l~~~~~~~~~~~~~~~~~vd~~~~~~~~----~l~~~~~v   86 (133)
T 3fk8_A           16 TQVKKALAAGKRTHKPTLLVFGA-----NWCTDCRALDKSLRNQKNTALIAKHFEVVKIDVGNFDRNL----ELSQAYGD   86 (133)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC-----TTCHHHHHHHHHHTSHHHHHHHHHHCEEEEEECTTTTSSH----HHHHHTTC
T ss_pred             hHHHHHHHHHHhcCCcEEEEEcC-----CCCHHHHHHHHHhCCHHHHHHhcCCEEEEEEeCCcccchH----HHHHHhCC
Confidence            455566665543 344544 555     99999999998887  2      2567778888   4443    34555566


Q ss_pred             ---CCccEEee---CCeEe
Q psy221           96 ---PTIPQVFI---NGEFV  108 (205)
Q Consensus        96 ---~tvPqvFI---~G~~I  108 (205)
                         ..+|.+++   +|+.+
T Consensus        87 ~~~~~~Pt~~~~d~~G~~~  105 (133)
T 3fk8_A           87 PIQDGIPAVVVVNSDGKVR  105 (133)
T ss_dssp             GGGGCSSEEEEECTTSCEE
T ss_pred             ccCCccceEEEECCCCCEE
Confidence               78998865   77765

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=97.06  E-value=0.0038  Score=43.69  Aligned_cols=56  Identities=14%  Similarity=0.298  Sum_probs=40.5

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ++.|..     +||++|......|++    +  ++.+..+|++.++++    .+..+-..+|.+++  +|+.+
T Consensus        23 lv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~----~~~~~v~~~Pt~~~~~~G~~~   86 (107)
T 1dby_A           23 LVDFWA-----PWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPNV----ASEYGIRSIPTIMVFKGGKKC   86 (107)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHHH----HHHHTCCSSCEEEEESSSSEE
T ss_pred             EEEEEC-----CCCHhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHH----HHHCCCCcCCEEEEEeCCEEE
Confidence            444666     999999999888754    3  367778888777644    34456778999877  78653

>4exj_A Uncharacterized protein; transferase-like protein, transcription regulation, transfer structural genomics; 1.64A {Lodderomyces elongisporus nrrl yb-4239}

Probab=97.04  E-value=0.0021  Score=52.29  Aligned_cols=68  Identities=10%  Similarity=0.168  Sum_probs=54.2

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l  117 (205)
                      ++ +|..     + ||+|.+++-+|+..||+|+.+.|+..  ....+++.++....++|.+.. ||..|.....|.+.
T Consensus         4 ~l-Ly~~-----~-s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~P~g~vPvL~~~dg~~l~eS~aI~~y   74 (238)
T 4exj_A            4 AI-LYTG-----P-TGNGRKPLVLGKLLNAPIKVHMFHWPTKDIQEDWYLKLNPAGIVPTLVDDKGTPITESNNILLY   74 (238)
T ss_dssp             EE-EEEC-----S-STTTHHHHHHHHHTTCSEEEEECC-CCSGGGSHHHHHHCTTCCSCEEECTTSCEEESHHHHHHH
T ss_pred             ee-EeeC-----C-CCchHHHHHHHHHcCCCceEEEecccCCccCCHHHHhhCCCCCCCEEEeCCCcEEeeHHHHHHH
Confidence            45 8988     8 99999999999999999999988753  344566777777789999988 46888777766654

>1tu7_A Glutathione S-transferase 2; HET: GSH; 1.50A {Onchocerca volvulus} SCOP: a.45.1.1 c.47.1.5 PDB: 1tu8_A*

Probab=97.03  E-value=0.0016  Score=51.71  Aligned_cols=69  Identities=13%  Similarity=0.201  Sum_probs=54.4

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +++||..     +.||+|.+++-+|+..||+|+.+.++....  .++.+.....++|.+..||..|.....|.+..
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~--~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~yL   70 (208)
T 1tu7_A            2 SYKLTYF-----SIRGLAEPIRLFLVDQDIKFIDDRIAKDDF--SSIKSQFQFGQLPCLYDGDQQIVQSGAILRHL   70 (208)
T ss_dssp             CEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECGGGS--TTTGGGSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CcEEEEc-----CCCcchHHHHHHHHHcCCCceEEEEcHHHH--HHhccCCCCCCCCEEEECCEEEEcHHHHHHHH
Confidence            5788988     889999999999999999999988864321  24445556678999999998888777666543

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.02  E-value=0.004  Score=46.26  Aligned_cols=73  Identities=10%  Similarity=0.132  Sum_probs=47.8

Q ss_pred             HHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHH-------HhC-CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221           31 VQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQIL-------RMH-DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF  102 (205)
Q Consensus        31 ~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL-------~~~-gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF  102 (205)
                      ....+.+.-...-|+.|..     +||++|.+....|       +.+ ++.+..+|++.+.+...++.+..+-..+|.++
T Consensus        22 ~~~~l~~~~~k~vlv~F~a-----~wC~~C~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~~~l~~~~~v~~~Pt~~   96 (134)
T 2fwh_A           22 LNQALVEAKGKPVMLDLYA-----DWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPTIL   96 (134)
T ss_dssp             HHHHHHHHTTSCEEEEEEC-----TTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSEEE
T ss_pred             HHHHHHHhcCCcEEEEEEC-----CCCHHHHHHHHHhcCCHHHHHHhcCcEEEEEeCCCCcchHHHHHHHcCCCCCCEEE
Confidence            3444444333344455666     9999999976443       222 57788888876545556777777888999986


Q ss_pred             e---CCeEe
Q psy221          103 I---NGEFV  108 (205)
Q Consensus       103 I---~G~~I  108 (205)
                      +   +|+.+
T Consensus        97 ~~d~~G~~v  105 (134)
T 2fwh_A           97 FFDGQGQEH  105 (134)
T ss_dssp             EECTTSCBC
T ss_pred             EECCCCCEe
Confidence            5   67654

>1eej_A Thiol:disulfide interchange protein; oxidoreductase, protein disulfide isomerase, protein folding, redox protein, redox-active center; HET: MES; 1.90A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1tjd_A 1jzd_A 1jzo_A 1g0t_A 2iyj_A

Probab=97.00  E-value=0.0013  Score=53.49  Aligned_cols=65  Identities=17%  Similarity=0.298  Sum_probs=44.6

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC---CCCeEEEEccC---CH---------------------------------
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH---DVPYDSHDVLK---DE---------------------------------   83 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~---gV~~~e~DI~~---d~---------------------------------   83 (205)
                      .|++|+.     ++||+|++....|+++   +|.+..+++..   ++                                 
T Consensus        89 ~vv~F~d-----~~Cp~C~~~~~~l~~l~~~~v~v~~~~~p~~~~~~~s~~~a~a~~~a~d~~~~~~~~~~~~~~~~~~~  163 (216)
T 1eej_A           89 VITVFTD-----ITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASC  163 (216)
T ss_dssp             EEEEEEC-----TTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCC
T ss_pred             EEEEEEC-----CCCHHHHHHHHHHHHHHhCCcEEEEEECCccCCCchHHHHHHHHHhccCHHHHHHHHHhCCCCChhHH
Confidence            4677888     9999999998887654   67766665431   11                                 


Q ss_pred             ----hHHHHHHHHhCCCCccEEee-CCeEeechh
Q psy221           84 ----SIRNGIKEYTSWPTIPQVFI-NGEFVGGCD  112 (205)
Q Consensus        84 ----~~~~eL~~~~g~~tvPqvFI-~G~~IGG~d  112 (205)
                          +...++.+..|-..+|.+|+ ||+.+.|+.
T Consensus       164 ~~~v~~~~~l~~~~gV~gtPt~v~~dG~~~~G~~  197 (216)
T 1eej_A          164 DVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQ  197 (216)
T ss_dssp             SCCHHHHHHHHHHHTCCSSSEEECTTSCEEESCC
T ss_pred             HHHHHHHHHHHHHcCCCccCEEEEcCCeEecCCC
Confidence                11123444458889999998 888887763

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=96.96  E-value=0.0012  Score=47.00  Aligned_cols=56  Identities=18%  Similarity=0.355  Sum_probs=40.0

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh---------CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM---------HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~---------~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ++.|..     +||++|++....|.+         ..+.+..+|++.++++.    +..+-..+|.+++  +|+.+
T Consensus        28 lv~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~~~----~~~~v~~~Pt~~~~~~g~~~   94 (120)
T 1mek_A           28 LVEFYA-----PWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLA----QQYGVRGYPTIKFFRNGDTA   94 (120)
T ss_dssp             EEEEEC-----SSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSH----HHHTCCSSSEEEEEESSCSS
T ss_pred             EEEEEC-----CCCHHHHHhhHHHHHHHHHHhccCCcEEEEEEcCCCCHHHH----HHCCCCcccEEEEEeCCCcC
Confidence            445666     999999998887754         24678888887776443    3346678999977  77643

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=96.96  E-value=0.0025  Score=46.43  Aligned_cols=58  Identities=9%  Similarity=0.172  Sum_probs=40.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh------CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee---CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM------HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI---NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~------~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI---~G~~I  108 (205)
                      ++.|..     +||++|.+....|.+      .++.+..+|++.+.  ..++.+..+-..+|.+++   +|+.+
T Consensus        30 lv~f~a-----~wC~~C~~~~~~l~~~~~~~~~~v~~~~v~~~~d~--~~~~~~~~~v~~~Pt~~~~~~~G~~~   96 (126)
T 2l57_A           30 IIMFKT-----DTCPYCVEMQKELSYVSKEREGKFNIYYARLEEEK--NIDLAYKYDANIVPTTVFLDKEGNKF   96 (126)
T ss_dssp             EEEEEC-----SSCHHHHHHHHHHHHHHHHSSSSCEEEEEETTSSH--HHHHHHHTTCCSSSEEEEECTTCCEE
T ss_pred             EEEEEC-----CCCccHHHHHHHHHHHHHHhcCCeEEEEEeCCCCc--hHHHHHHcCCcceeEEEEECCCCCEE
Confidence            444666     999999999888754      25667777732332  234555667889999988   78754

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.96  E-value=0.0019  Score=47.98  Aligned_cols=58  Identities=19%  Similarity=0.327  Sum_probs=41.6

Q ss_pred             CcE-EEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           42 SKV-VVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        42 ~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ..+ +.|..     +||++|++....|++    +  ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        41 k~vlv~F~a-----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~  107 (128)
T 2o8v_B           41 GAILVDFWA-----EWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPTLLLFKNGEVA  107 (128)
T ss_dssp             SEEEEEEEC-----SSCHHHHHTHHHHHHHHHHTTTTEEEEEEETTTCCT----TSGGGTCCSSSEEEEEETTEEE
T ss_pred             CEEEEEEEC-----CCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCccCEEEEEeCCEEE
Confidence            344 44566     999999999887754    3  46777888877664    334457778999988  88764

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=96.94  E-value=0.0039  Score=46.33  Aligned_cols=55  Identities=22%  Similarity=0.333  Sum_probs=40.1

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee---CCeE
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI---NGEF  107 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI---~G~~  107 (205)
                      |+.|..     +||++|.+....|++    +  ++.+..+|++.+++    +.+..+-..+|.+++   +|+.
T Consensus        42 lv~f~a-----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~~G~~  105 (136)
T 2l5l_A           42 IVDFYA-----DWCGPCKMVAPILDELAKEYDGQIVIYKVDTEKEQE----LAGAFGIRSIPSILFIPMEGKP  105 (136)
T ss_dssp             EEEEEC-----TTSHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSCEEEEECSSSCC
T ss_pred             EEEEEC-----CcCHHHHHHHHHHHHHHHHhcCCEEEEEEeCCCCHH----HHHHcCCCCCCEEEEECCCCcE
Confidence            455666     999999999888864    3  37788888887764    444557778998865   6754

>1m0u_A GST2 gene product; flight muscle protein, sigma, transferase; HET: GSH; 1.75A {Drosophila melanogaster} SCOP: a.45.1.1 c.47.1.5

Probab=96.93  E-value=0.0027  Score=52.76  Aligned_cols=72  Identities=14%  Similarity=0.206  Sum_probs=58.0

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      +.++.||..     +.|++|.+++-+|+..||+|+.+.++.+.  ..+++++....++|.+..||..|.....|.+..+
T Consensus        47 m~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~--~~e~~~~nP~gkVPvL~~~g~~l~ES~aI~~YL~  118 (249)
T 1m0u_A           47 KHSYTLFYF-----NVKALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTMPMGQMPVLEVDGKRVHQSISMARFLA  118 (249)
T ss_dssp             CCCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGSGGGCSCEEEETTEEEECHHHHHHHHH
T ss_pred             CCCeEEEEc-----CCcccHHHHHHHHHHcCCCcEEEEeCHHH--HHHHhhcCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            456899988     88999999999999999999999987532  3456666656689999999998888776666543

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=96.92  E-value=0.0055  Score=45.83  Aligned_cols=57  Identities=18%  Similarity=0.268  Sum_probs=42.3

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      |+.|..     +||++|++....|.++      .+.+..+|++.++++    .+..+-..+|.+++  +|+.+.
T Consensus        28 lv~F~a-----~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l----~~~~~v~~~Pt~~~~~~G~~~~   92 (140)
T 3hz4_A           28 VVMFYS-----PACPYCKAMEPYFEEYAKEYGSSAVFGRINIATNPWT----AEKYGVQGTPTFKFFCHGRPVW   92 (140)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHHTTTSEEEEEETTTCHHH----HHHHTCCEESEEEEEETTEEEE
T ss_pred             EEEEEC-----CCChhHHHHHHHHHHHHHHhCCceEEEEEECCcCHhH----HHHCCCCcCCEEEEEeCCcEEE
Confidence            455666     9999999999888653      377888888877644    44456778999987  887653

>3tou_A Glutathione S-transferase protein; GSH binding site, GSH; HET: GSH; 1.75A {Ralstonia solanacearum} PDB: 3tot_A*

Probab=96.92  E-value=0.0013  Score=53.15  Aligned_cols=70  Identities=9%  Similarity=0.144  Sum_probs=53.6

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLHQ  119 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~e  119 (205)
                      +.||..     +.||+|.+++-+|+..||+|+.+.++.... .+++.++....++|.+.+ ||..|.....|.+..+
T Consensus         3 ~~Ly~~-----~~sp~~~~vr~~L~~~gi~ye~~~v~~~~~-~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~yL~   73 (226)
T 3tou_A            3 MKLIGS-----HASPYTRKVRVVLAEKKIDYQFVLEDVWNA-DTQIHQFNPLGKVPCLVMDDGGALFDSRVIAEYAD   73 (226)
T ss_dssp             CEEEEC-----SSCHHHHHHHHHHHHTTCCCEEEECCTTST-TCCGGGTCTTCCSCEEECTTSCEECSHHHHHHHHH
T ss_pred             EEEecC-----CCCchHHHHHHHHHHcCCCcEEEecCccCC-cHHHHHhCCCCCCCEEEeCCCCEeccHHHHHHHHH
Confidence            578888     899999999999999999999998864321 123445566779999997 7778877776665543

>3cbu_A Probable GST-related protein; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics; 2.05A {Ralstonia eutropha}

Probab=96.92  E-value=0.0036  Score=49.50  Aligned_cols=63  Identities=13%  Similarity=0.156  Sum_probs=51.5

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC---CHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK---DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~---d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++||..     +.||+|.+++-+|+..||+|+.+.++.   .+++       ....++|.+..+|..|.....|.+..
T Consensus         3 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~-------~P~g~vP~L~~~~~~l~eS~aI~~yL   68 (214)
T 3cbu_A            3 LKLCGF-----AASNYYNKVKLALLEKNVPFEEVLAWIGETDTTA-------TPAGKVPYMITESGSLCESEVINEYL   68 (214)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHTCCEEEEECCTTSSCTTT-------STTCCSCEEEETTEEECSHHHHHHHH
T ss_pred             EEEecC-----CCCcHhHHHHHHHHhCCCCCEEEecCcccCCccc-------CCCCCCCEEEECCeeeecHHHHHHHH
Confidence            678988     899999999999999999999999874   2222       44568999999998888877766653

>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis, DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania infantum}

Probab=96.91  E-value=0.0019  Score=57.79  Aligned_cols=73  Identities=15%  Similarity=0.211  Sum_probs=56.6

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHH
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLH  118 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~  118 (205)
                      .+.+++||..     +.||+|.+++-+|+..||+|+.+.++... ..+++.+.....++|.|.+ ||..|.....|.+..
T Consensus       249 ~~~~~~L~~~-----~~sp~~~rv~~~L~~~gi~y~~~~v~~~~-~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL  322 (471)
T 4ags_A          249 ANGGHVLYSN-----LFCPFVDRARLASELRKFQMHIVEVPLHP-QPEWYKYINPRDTVPALFTPSGEAVHESQLIVQYI  322 (471)
T ss_dssp             GTTSCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCCSS-CCTTHHHHCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             CCCcEEEEec-----CCCchHHHHHHHHHHCCCCcEEEEecCCc-CcHHHHHhCCCCCcCeEEeCCCcEeecHHHHHHHH
Confidence            3457999999     99999999999999999999999887541 1234455556678999997 788887766665553

>3ik7_A Glutathione S-transferase A4; human GST A4-4, enzyme, cytoplasm, polymorphism; HET: BOB; 1.97A {Homo sapiens} PDB: 1gum_A 1gul_A*

Probab=96.90  E-value=0.0035  Score=50.06  Aligned_cols=71  Identities=15%  Similarity=0.175  Sum_probs=53.8

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHH--hCCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEY--TSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~--~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++++||..     +.||+|.+++-+|+..|++|+.+.++..+++. .+.-.  .-..++|.+..||..+.....|.+..
T Consensus         3 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~~~-~~~p~~~~p~g~vP~L~~~g~~l~eS~aI~~yL   75 (222)
T 3ik7_A            3 ARPKLHYP-----NGRGRMESVRWVLAAAGVEFDEEFLETKEQLY-KLQDGNHLLFQQVPMVEIDGMKLVQTRSILHYI   75 (222)
T ss_dssp             CSCEEEEC-----SSCTTTHHHHHHHHHTTCCCEEEECCSHHHHH-HHHHTTCSTTSCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCcEEEEe-----CCCcchHHHHHHHHHcCCCeeEEeeCcHHHHH-HhhhcCCCCCCCCCEEEECCEEeehHHHHHHHH
Confidence            36789988     89999999999999999999999997543321 22211  01468999999999988877666643

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=96.88  E-value=0.0097  Score=45.66  Aligned_cols=67  Identities=15%  Similarity=0.254  Sum_probs=46.9

Q ss_pred             HHHHHHhc-CCcE-EEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-
Q psy221           33 KSIDEMVK-KSKV-VVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-  103 (205)
Q Consensus        33 ~~l~~~~~-~~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-  103 (205)
                      +.+.+.++ ..+| |.|..     +||++|+.....|++.      ++.|..+|++.+++    +.+..+-..+|.+++ 
T Consensus        55 ~~f~~~~~~~~~vlv~F~a-----~wC~~C~~~~p~l~~la~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~  125 (155)
T 2ppt_A           55 AILARAERDDLPLLVDFWA-----PWCGPCRQMAPQFQAAAATLAGQVRLAKIDTQAHPA----VAGRHRIQGIPAFILF  125 (155)
T ss_dssp             HHHHHHTTCSSCEEEEEEC-----TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTSTH----HHHHTTCCSSSEEEEE
T ss_pred             HHHHHHHhCCCcEEEEEEC-----CCCHHHHHHHHHHHHHHHHccCCEEEEEEeCCccHH----HHHHcCCCcCCEEEEE
Confidence            33455544 3344 44666     9999999998888642      57888889887764    445557788999877 


Q ss_pred             -CCeEe
Q psy221          104 -NGEFV  108 (205)
Q Consensus       104 -~G~~I  108 (205)
                       +|+.+
T Consensus       126 ~~G~~~  131 (155)
T 2ppt_A          126 HKGREL  131 (155)
T ss_dssp             ETTEEE
T ss_pred             eCCeEE
Confidence             88764

>3gtu_B Glutathione S-transferase; conjugation, detoxification, cytosolic, heterodimer; 2.80A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5

Probab=96.87  E-value=0.0063  Score=48.78  Aligned_cols=73  Identities=14%  Similarity=0.211  Sum_probs=52.9

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-------HhHHHHHHHH-hCCCCccEEeeCCeEeechh
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-------ESIRNGIKEY-TSWPTIPQVFINGEFVGGCD  112 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-------~~~~~eL~~~-~g~~tvPqvFI~G~~IGG~d  112 (205)
                      ..+++||.-     +.|++|.+++-+|+..||+|+.+.|+..       ++....+... .-..++|.+..||..|....
T Consensus         3 ~~~~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~   77 (224)
T 3gtu_B            3 ESSMVLGYW-----DIRGLAHAIRLLLEFTDTSYEEKRYTCGEAPDYDRSQWLDVKFKLDLDFPNLPYLLDGKNKITQSN   77 (224)
T ss_dssp             CCCEEEEEE-----SSSGGGHHHHHHHHHTTCCEEEEEECCCCSSSCCCHHHHHHHTTSCCSSCCSSEEEETTEEEESHH
T ss_pred             CCCcEEEEe-----CCCcchHHHHHHHHHcCCCceEEEeecCCcccccHHHHHhhhhhcCCCCCCCCEEEECCEEeecHH
Confidence            356788888     8999999999999999999999988632       2222222111 23457999988888887777


Q ss_pred             HHHHHH
Q psy221          113 ILLKLH  118 (205)
Q Consensus       113 el~~l~  118 (205)
                      .|.+..
T Consensus        78 aI~~yL   83 (224)
T 3gtu_B           78 AILRYI   83 (224)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=96.86  E-value=0.0054  Score=46.85  Aligned_cols=79  Identities=9%  Similarity=0.210  Sum_probs=50.0

Q ss_pred             hHHHHHHHHHh-cCCcEEE-EE-eeCCCCCCChHHHHHHHHH---H----h--CCCCeEEEEccCCH-------hHHHHH
Q psy221           29 TDVQKSIDEMV-KKSKVVV-FM-KGVPEAPRCGFSNAVVQIL---R----M--HDVPYDSHDVLKDE-------SIRNGI   89 (205)
Q Consensus        29 ~~~~~~l~~~~-~~~~Vvl-Ys-k~~~~~~~Cp~C~~ak~lL---~----~--~gV~~~e~DI~~d~-------~~~~eL   89 (205)
                      .+..+.+.... +..+|+| |. .     +||++|.+....|   .    .  .++.+..+|++.++       ....++
T Consensus        34 ~~~~~~~~~a~~~gk~vlv~F~ga-----~wC~~C~~~~p~l~~~~~~~~~~~~~~~~v~vd~~~~~~~~~~~~~~~~~l  108 (154)
T 2ju5_A           34 ESYAEALEHSKQDHKPIGLFFTGS-----DWCMWCIKMQDQILQSSEFKHFAGVHLHMVEVDFPQKNHQPEEQRQKNQEL  108 (154)
T ss_dssp             ECHHHHHHHHHHHCCCEEEEEECT-----TTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEECCSSCCCCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCeEEEEEeCC-----CCCHhHHHHHHHHhcCHHHHHHhcCcEEEEEecCccccCCChhhHhhHHHH
Confidence            33455554443 3445555 44 5     9999999988766   2    1  24566677776654       334566


Q ss_pred             HHHhCCCCccEEee---CCeEee--chh
Q psy221           90 KEYTSWPTIPQVFI---NGEFVG--GCD  112 (205)
Q Consensus        90 ~~~~g~~tvPqvFI---~G~~IG--G~d  112 (205)
                      .+..+-..+|.+++   +|+.+.  |+.
T Consensus       109 ~~~~~v~~~Pt~~~~d~~G~~~~~~G~~  136 (154)
T 2ju5_A          109 KAQYKVTGFPELVFIDAEGKQLARMGFE  136 (154)
T ss_dssp             HHHTTCCSSSEEEEECTTCCEEEEECCC
T ss_pred             HHHcCCCCCCEEEEEcCCCCEEEEecCC
Confidence            66778888999866   687655  544

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=96.85  E-value=0.0035  Score=46.05  Aligned_cols=59  Identities=15%  Similarity=0.254  Sum_probs=42.6

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ..|+| |..     +||++|++....|++.      ++.+..+|++.++    ++.+..+-..+|.+++  +|+.+.
T Consensus        43 k~vlv~F~a-----~wC~~C~~~~p~l~~~~~~~~~~v~~~~vd~d~~~----~l~~~~~v~~~Pt~~~~~~G~~~~  110 (128)
T 3ul3_B           43 TVIVLYFFA-----KWCQACTMQSTEMDKLQKYYGKRIYLLKVDLDKNE----SLARKFSVKSLPTIILLKNKTMLA  110 (128)
T ss_dssp             SEEEEEEEC-----TTCHHHHHHHHHHHHHHHHHGGGEEEEEEEGGGCH----HHHHHTTCCSSSEEEEEETTEEEE
T ss_pred             CEEEEEEEC-----CCCHHHHHHhHHHHHHHHHhcCCeEEEEEECCCCH----HHHHHcCCCCcCEEEEEECCEEEE
Confidence            34444 666     9999999999888643      4567778887766    4455567788999877  887664

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.84  E-value=0.0022  Score=47.36  Aligned_cols=48  Identities=15%  Similarity=0.248  Sum_probs=35.6

Q ss_pred             CCChHHHHHHHHHHhC---------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCe
Q psy221           55 PRCGFSNAVVQILRMH---------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGE  106 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~---------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~  106 (205)
                      +||++|++....|.++         .+.+..+|++.+.+    +.+..+-..+|.+++  +|+
T Consensus        44 ~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----~~~~~~v~~~Pt~~~~~~G~  102 (140)
T 2dj1_A           44 PWCGHCKQFAPEYEKIASTLKDNDPPIAVAKIDATSASM----LASKFDVSGYPTIKILKKGQ  102 (140)
T ss_dssp             TTCHHHHTTHHHHHHHHHHHHSSSSCCEEEEECTTTCHH----HHHHTTCCSSSEEEEEETTE
T ss_pred             CCCHHHHHhhHHHHHHHHHHhccCCceEEEEEeCcccHH----HHHHCCCCccCeEEEEECCc
Confidence            9999999988777542         26677778776643    444567778999977  887

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=96.84  E-value=0.0047  Score=45.93  Aligned_cols=56  Identities=23%  Similarity=0.369  Sum_probs=41.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      |+.|..     +||++|......|++    +  ++.|..+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        54 vv~f~~-----~~C~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~  117 (140)
T 1v98_A           54 LVDFFA-----PWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPG----LAARYGVRSVPTLVLFRRGAPV  117 (140)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEE
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHccCceEEEEEECCCCHH----HHHHCCCCccCEEEEEeCCcEE
Confidence            444656     999999999988865    2  46778888877764    444557778999887  88754

>1b48_A GST, mgsta4-4, protein (glutathione S-transferase); subunit cooperativity; HET: HAG GSH; 2.60A {Mus musculus} SCOP: a.45.1.1 c.47.1.5 PDB: 1guk_A

Probab=96.83  E-value=0.0018  Score=52.07  Aligned_cols=71  Identities=14%  Similarity=0.189  Sum_probs=55.1

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHH--hCCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEY--TSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~--~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ..++||..     +.||+|.+++-+|+..||+|+.+.++..+. ..++++.  ....++|.+..||..|.....|.+..
T Consensus         2 ~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~ye~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL   74 (221)
T 1b48_A            2 AKPKLYYF-----NGRGRMESIRWLLAAAGVEFEEEFLETREQ-YEKMQKDGHLLFGQVPLVEIDGMMLTQTRAILSYL   74 (221)
T ss_dssp             CCCEEEBC-----SSCTTTHHHHHHHHHHTCCCCCCBCCCHHH-HHHHHTTTCSSSSCSCEEEETTEEECCHHHHHHHH
T ss_pred             CceEEEEe-----CCCcchHHHHHHHHHcCCCceEEEeCchHh-HHHHHhcCCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            45788987     889999999999999999999988864332 2345554  55668999999998888777666543

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=96.83  E-value=0.012  Score=44.15  Aligned_cols=59  Identities=19%  Similarity=0.421  Sum_probs=42.1

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ..|+| |..     +||++|+.....|++.      ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+.
T Consensus        56 k~vlv~F~a-----~wC~~C~~~~p~l~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~~~  123 (148)
T 3p2a_A           56 LPMVIDFWA-----PWCGPCRSFAPIFAETAAERAGKVRFVKVNTEAEPA----LSTRFRIRSIPTIMLYRNGKMID  123 (148)
T ss_dssp             SCEEEEEEC-----SSCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEEC-----CCCHHHHHHHHHHHHHHHHcCCceEEEEEECcCCHH----HHHHCCCCccCEEEEEECCeEEE
Confidence            34444 666     9999999999888642      56777888877764    444557778998866  887553

>1nhy_A EF-1-gamma 1, elongation factor 1-gamma 1; protein synthesis, GST-like, translation; 3.00A {Saccharomyces cerevisiae} SCOP: a.45.1.1 c.47.1.5

Probab=96.82  E-value=0.0028  Score=50.39  Aligned_cols=68  Identities=3%  Similarity=-0.117  Sum_probs=53.6

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~e  119 (205)
                      +++||..      .|++|.+++-+|+..||+|+.+.++   ...+++.++....++|.+.. ||..|.....|.+..+
T Consensus         3 ~~~Ly~~------~~~~~~~v~~~l~~~gi~~e~~~~~---~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~   71 (219)
T 1nhy_A            3 QGTLYAN------FRIRTWVPRGLVKALKLDVKVVTPD---AAAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYYLV   71 (219)
T ss_dssp             TCEEECC------SSHHHHHHHHHHHHHTCCCEEECGG---GCHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHHHH
T ss_pred             ceEEecC------CCCChHHHHHHHHHcCCCceeeccc---CCCHHHHHHCCCCCCCeEEcCCCCEEecHHHHHHHHH
Confidence            4678864      3999999999999999999999987   22345666666778999998 8888888777666443

>4ikh_A Glutathione S-transferase; enzyme function initiative, EFI, structural genomics; HET: GSH; 2.10A {Pseudomonas protegens}

Probab=96.82  E-value=0.0042  Score=50.42  Aligned_cols=71  Identities=14%  Similarity=0.185  Sum_probs=55.7

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee----CC--eEeechh
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI----NG--EFVGGCD  112 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI----~G--~~IGG~d  112 (205)
                      +..++||..     + ||+|.+++-+|+..||+|+.+.|+..  +....++.++....++|.+..    ||  ..|....
T Consensus        20 ~~~~~Ly~~-----~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~dG~~~~l~eS~   93 (244)
T 4ikh_A           20 PEWIQLYSL-----P-TPNGVKVSIMLEEIGLPYEAHRVSFETQDQMTPEFLSVSPNNKIPAILDPHGPGDQPLALFESG   93 (244)
T ss_dssp             TTSEEEEEC-----S-SHHHHHHHHHHHHHTCCEEEEECCTTTTTTSSHHHHTTCTTSCSCEEEETTCGGGCCEEEESHH
T ss_pred             CCeeEEEeC-----C-CCChHHHHHHHHHcCCCceEEEecCCCCCcCChHHHhcCCCCCCCEEEecCCCCCCceeEEcHH
Confidence            357999988     8 99999999999999999999888743  234456777777778999998    45  5777766


Q ss_pred             HHHHH
Q psy221          113 ILLKL  117 (205)
Q Consensus       113 el~~l  117 (205)
                      .|.+.
T Consensus        94 aI~~y   98 (244)
T 4ikh_A           94 AILIY   98 (244)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>3evi_A Phosducin-like protein 2; alpha beta, 3-layer(ABA) sandwich, unknown function; 2.70A {Homo sapiens}

Probab=96.76  E-value=0.0016  Score=48.68  Aligned_cols=79  Identities=14%  Similarity=0.088  Sum_probs=51.5

Q ss_pred             cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeechhHH
Q psy221           43 KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGGCDIL  114 (205)
Q Consensus        43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG~del  114 (205)
                      .|+| |..     +||+.|+.+...|+++     ++.|-.+|++..       .+..+-..+|.+  |-||+.+....-.
T Consensus        25 ~vvv~F~a-----~wc~~C~~~~p~l~~la~~~~~v~f~kvd~d~~-------~~~~~v~~~PT~~~fk~G~~v~~~~G~   92 (118)
T 3evi_A           25 WVIIHLYR-----SSIPMCLLVNQHLSLLARKFPETKFVKAIVNSC-------IQHYHDNCLPTIFVYKNGQIEAKFIGI   92 (118)
T ss_dssp             EEEEEEEC-----TTSHHHHHHHHHHHHHHHHCTTSEEEEEEGGGT-------STTCCGGGCSEEEEEETTEEEEEEEST
T ss_pred             eEEEEEeC-----CCChHHHHHHHHHHHHHHHCCCCEEEEEEhHHh-------HHHCCCCCCCEEEEEECCEEEEEEeCh
Confidence            4655 556     9999999999998653     577888888754       134466789987  4488765433222


Q ss_pred             HHH----HhcccHHHHHhhcCCc
Q psy221          115 LKL----HQSGELVEQLEKGDQK  133 (205)
Q Consensus       115 ~~l----~e~GeL~~~L~~~~~~  133 (205)
                      ..+    ....+|+.+|...++.
T Consensus        93 ~~~gg~~~~~~~le~~L~~~g~i  115 (118)
T 3evi_A           93 IECGGINLKLEELEWKLAEVGAI  115 (118)
T ss_dssp             TTTTCSSCCHHHHHHHHHTTTSC
T ss_pred             hhhCCCCCCHHHHHHHHHHcCCc
Confidence            211    2234677778776654

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=96.76  E-value=0.011  Score=42.37  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=41.7

Q ss_pred             HHHhcCC-c-EEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           36 DEMVKKS-K-VVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        36 ~~~~~~~-~-VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +.+++.+ . ++.|..     +||++|..+...|++.      ++.+..+|++.+++    +.+..+-..+|.+++
T Consensus        15 ~~~~~~~~~~lv~f~a-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~   81 (122)
T 3aps_A           15 EKVLQGKTHWVVDFYA-----PWCGPCQNFAPEFELLARMIKGKVRAGKVDCQAYPQ----TCQKAGIKAYPSVKL   81 (122)
T ss_dssp             HHTTTCSSCEEEEEEC-----TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEE
T ss_pred             HHHhcCCCeEEEEEEC-----CCCHHHHHHHHHHHHHHHHhcCCeEEEEEeCcCCHH----HHHHcCCCccceEEE
Confidence            3444433 3 445666     9999999999888652      57888889887764    444567778999866

>2ycd_A Glutathione S-transferase; SOIL bacteria, herbicide detoxification; HET: GTB; 1.40A {Agrobacterium tumefaciens} PDB: 3lq7_A

Probab=96.76  E-value=0.0011  Score=53.53  Aligned_cols=72  Identities=13%  Similarity=0.087  Sum_probs=55.8

Q ss_pred             cEEEEEeeCCCCCCC-----hHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEAPRC-----GFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~C-----p~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +++||..     +.|     ++|.+++-+|+..||+|+.+.++.......++.++....++|.+..||..|.....|.+.
T Consensus        18 ~~~Ly~~-----~~s~~~~~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   92 (230)
T 2ycd_A           18 TITVFER-----SPDGGRGLARDMPVRWALEEVGQPYHVRRLSFEAMKEASHLAYQPFGQIPSYEQGDLILFESGAIVMH   92 (230)
T ss_dssp             EEEEESS-----CTTTTSSCSTHHHHHHHHHHHTCCCEEEEECHHHHTSTTGGGTCTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEecC-----CCccccCCCccHHHHHHHHHcCCCceEEEeCccccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            6999988     888     999999999999999999998864211123444555667899999999888887776665


Q ss_pred             Hh
Q psy221          118 HQ  119 (205)
Q Consensus       118 ~e  119 (205)
                      .+
T Consensus        93 L~   94 (230)
T 2ycd_A           93 IA   94 (230)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2yv7_A CG10997-PA, LD46306P, CLIC; dmclic, chloride ION channel, GST fold, metal transport; 1.70A {Drosophila melanogaster}

Probab=96.74  E-value=0.0049  Score=51.62  Aligned_cols=79  Identities=10%  Similarity=0.090  Sum_probs=55.5

Q ss_pred             cCCcEEEEEeeCC---CC-CCChHHHHHHHHH----HhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeech
Q psy221           40 KKSKVVVFMKGVP---EA-PRCGFSNAVVQIL----RMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGC  111 (205)
Q Consensus        40 ~~~~VvlYsk~~~---~~-~~Cp~C~~ak~lL----~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~  111 (205)
                      .+..+++|.+...   .. ..||+|.+++-+|    +..||+|+.+.|+... ..+++.++.-..++|.+..||..|...
T Consensus        19 ~~~~i~Ly~~~~s~~~~~~~~cP~~~rv~~~L~ll~~~~gi~ye~~~v~~~~-~~~~~~~~nP~gkVPvL~d~g~~l~ES   97 (260)
T 2yv7_A           19 DVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDMQK-PPPDFRTNFEATHPPILIDNGLAILEN   97 (260)
T ss_dssp             CCCEEEEEEEBCTTTSSSBCCCHHHHHHHHHHHHHHHTTSSEEEEEEECTTS-CC-----CCTTCCSCEEEETTEEECSH
T ss_pred             CCccEEEEEeccCCCCCccCcChHHHHHHHHHHhHHHhcCCCceEEEecccc-CCHHHHhhCCCCCCCEEEECCEEEeCH
Confidence            3567999976422   22 5799999999999    8889999998886431 123555666677899999999888777


Q ss_pred             hHHHHHHh
Q psy221          112 DILLKLHQ  119 (205)
Q Consensus       112 del~~l~e  119 (205)
                      ..|.+..+
T Consensus        98 ~aI~~YL~  105 (260)
T 2yv7_A           98 EKIERHIM  105 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            76666544

>3gx0_A GST-like protein YFCG; transferase, glutathione, glutathione disulfide, disulfide bond oxidoreductase; HET: GDS; 2.30A {Escherichia coli}

Probab=96.74  E-value=0.0063  Score=48.18  Aligned_cols=68  Identities=12%  Similarity=0.133  Sum_probs=53.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeC---C----eEeechhHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFIN---G----EFVGGCDIL  114 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~---G----~~IGG~del  114 (205)
                      +.||..     + ||+|.+++-+|+..||+|+.+.|+..  .....++.++....++|.+..+   |    ..|.....|
T Consensus         2 ~~Ly~~-----~-s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~P~g~vP~L~~~~~~~dG~~~~l~eS~aI   75 (215)
T 3gx0_A            2 IDLYFA-----P-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAI   75 (215)
T ss_dssp             EEEEEC-----S-SHHHHHHHHHHHHHTCCEEEEECCTTTTGGGSHHHHTTCTTSCSCEEEESSCTTCCSCEEEESHHHH
T ss_pred             eEEEeC-----C-CCChHHHHHHHHHcCCCcEEEecCCCCCCCCChHHHHhCCCCCCCEEEeCCCCCCCCceEEEcHHHH
Confidence            578876     6 99999999999999999999988753  2334567777667789999998   4    778777766


Q ss_pred             HHH
Q psy221          115 LKL  117 (205)
Q Consensus       115 ~~l  117 (205)
                      .+.
T Consensus        76 ~~y   78 (215)
T 3gx0_A           76 LLY   78 (215)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=96.72  E-value=0.00045  Score=50.39  Aligned_cols=72  Identities=10%  Similarity=0.203  Sum_probs=48.8

Q ss_pred             ChHHHHHHHHHhc-CCc-EEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221           28 STDVQKSIDEMVK-KSK-VVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQ  100 (205)
Q Consensus        28 ~~~~~~~l~~~~~-~~~-VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPq  100 (205)
                      .++.++.+..... ..+ |+.|..     +||++|.+....|+++     ++.+..+|++.++++.+    ..+-..+|.
T Consensus        22 ~~~~~~~l~~~~~~~~~~vv~f~~-----~~C~~C~~~~~~l~~~~~~~~~v~~~~v~~~~~~~~~~----~~~v~~~Pt   92 (130)
T 1wmj_A           22 KDEFDAQMTKAKEAGKVVIIDFTA-----SWCGPCRFIAPVFAEYAKKFPGAVFLKVDVDELKEVAE----KYNVEAMPT   92 (130)
T ss_dssp             SHHHHHHHHHHHTTTCBCBEECCS-----SSCSCSSSSHHHHHHHHHHCTTBCCEECCTTTSGGGHH----HHTCCSSCC
T ss_pred             HHHHHHHHHHHhhcCCEEEEEEEC-----CCChhHHHHHHHHHHHHHHCCCCEEEEEeccchHHHHH----HcCCCccce
Confidence            3556666666542 333 445555     9999999888777543     67888888887765443    346678898


Q ss_pred             Eee--CCeEe
Q psy221          101 VFI--NGEFV  108 (205)
Q Consensus       101 vFI--~G~~I  108 (205)
                      +++  +|+.+
T Consensus        93 ~~~~~~g~~~  102 (130)
T 1wmj_A           93 FLFIKDGAEA  102 (130)
T ss_dssp             CCBCTTTTCC
T ss_pred             EEEEeCCeEE
Confidence            877  77654

>1oe8_A Glutathione S-transferase; schistosomiasis, detoxifying enzyme, prostaglandin D2 synthase, vaccine candidate; HET: GSH; 1.65A {Schistosoma haematobium} SCOP: a.45.1.1 c.47.1.5 PDB: 1oe7_A* 2c80_A* 2ca8_A* 2f8f_A* 2c8u_A 2caq_A* 2cai_A* 1u3i_A*

Probab=96.69  E-value=0.0042  Score=49.09  Aligned_cols=70  Identities=14%  Similarity=0.134  Sum_probs=53.0

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeE-----eechhHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEF-----VGGCDILL  115 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~-----IGG~del~  115 (205)
                      +..++||..     +.||+|.+++-+|+..||+|+.+.++...  .+++.......++|.+..+|..     |.....|.
T Consensus         3 m~~~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~--~~~~~~~~P~g~vP~L~~~~~~g~~~~l~eS~aI~   75 (211)
T 1oe8_A            3 GDHIKVIYF-----NGRGRAESIRMTLVAAGVNYEDERISFQD--WPKIKPTIPGGRLPAVKITDNHGHVKWMVESLAIA   75 (211)
T ss_dssp             -CEEEEEES-----CTTSTTHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGSTTSCSCEEEEECTTCCEEEEESHHHHH
T ss_pred             CCceEEEEe-----CCCChHHHHHHHHHHcCCCceEEEechHh--HHHhcccCCCCCCCEEEECCccccceeeccHHHHH
Confidence            346889888     88999999999999999999999987532  2345555566789999887654     66666555


Q ss_pred             HH
Q psy221          116 KL  117 (205)
Q Consensus       116 ~l  117 (205)
                      +.
T Consensus        76 ~y   77 (211)
T 1oe8_A           76 RY   77 (211)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=96.65  E-value=0.00079  Score=50.58  Aligned_cols=79  Identities=20%  Similarity=0.155  Sum_probs=47.1

Q ss_pred             cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee---ch
Q psy221           43 KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG---GC  111 (205)
Q Consensus        43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG---G~  111 (205)
                      .|+| |..     +||++|+.+...|+++     ++.|..+|++..+       +..+-..+|.+++  +|+.+.   |+
T Consensus        32 ~vvv~f~a-----~wC~~C~~~~p~l~~la~~~~~v~~~~vd~~~~~-------~~~~i~~~Pt~~~~~~G~~v~~~~G~   99 (135)
T 2dbc_A           32 WVVIHLYR-----SSVPMCLVVNQHLSVLARKFPETKFVKAIVNSCI-------EHYHDNCLPTIFVYKNGQIEGKFIGI   99 (135)
T ss_dssp             EEEEEECC-----TTCHHHHHHHHHHHHHHHHCSSEEEEEECCSSSC-------SSCCSSCCSEEEEESSSSCSEEEEST
T ss_pred             EEEEEEEC-----CCChHHHHHHHHHHHHHHHCCCcEEEEEEhhcCc-------ccCCCCCCCEEEEEECCEEEEEEEeE
Confidence            4555 555     9999999999888643     4566677776553       3456678898754  775432   33


Q ss_pred             hHHHHH-HhcccHHHHHhhcCCc
Q psy221          112 DILLKL-HQSGELVEQLEKGDQK  133 (205)
Q Consensus       112 del~~l-~e~GeL~~~L~~~~~~  133 (205)
                      .++... ....+|.++|+..+..
T Consensus       100 ~~~~~~~~~~~~l~~~l~~~~~i  122 (135)
T 2dbc_A          100 IECGGINLKLEELEWKLSEVGAI  122 (135)
T ss_dssp             TTTTCTTCCHHHHHHHHHHHTSS
T ss_pred             EeeCCCcCCHHHHHHHHHHcCCc
Confidence            211100 0124577777766543

>2yv9_A Chloride intracellular channel EXC-4; chloride ION channel, CLIC, GST fold, metal transport; 1.60A {Caenorhabditis elegans}

Probab=96.64  E-value=0.0087  Score=50.79  Aligned_cols=76  Identities=9%  Similarity=-0.060  Sum_probs=56.9

Q ss_pred             CCcEEEEEeeCC---CC-CCChHHHHHHHHH----HhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEeec
Q psy221           41 KSKVVVFMKGVP---EA-PRCGFSNAVVQIL----RMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVGG  110 (205)
Q Consensus        41 ~~~VvlYsk~~~---~~-~~Cp~C~~ak~lL----~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IGG  110 (205)
                      +..+++|.+...   .. ..||+|.+++.+|    +..||+|+.+.|+....  . +.++.-..+||.+..  ||..|..
T Consensus        17 ~~~i~Ly~~~~~~~~~~~~~cP~~~rv~~~L~lL~e~kgi~ye~~~vd~~~~--p-fl~~nP~GkVPvL~d~~~g~~l~E   93 (291)
T 2yv9_A           17 KPLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNVNSE--A-FKKNFLGAQPPIMIEEEKELTYTD   93 (291)
T ss_dssp             SCEEEEEEEBCSSCTTSBCCCHHHHHHHHHHHHHHHTTSCEEEEEEECTTCH--H-HHHHHTTCCSCEEEEGGGTEEECS
T ss_pred             CCCEEEEEecCCCCcCccCcChHHHHHHHHHHHHHHhcCceeEEEEeCCCCh--h-HHhcCCCCCCCEEEEcCCCeEEeC
Confidence            457999987421   11 4699999999999    78899999988875422  2 666777789999998  8888877


Q ss_pred             hhHHHHHHh
Q psy221          111 CDILLKLHQ  119 (205)
Q Consensus       111 ~del~~l~e  119 (205)
                      ...|.+..+
T Consensus        94 S~aI~~YL~  102 (291)
T 2yv9_A           94 NREIEGRIF  102 (291)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            766666544

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=96.59  E-value=0.0011  Score=52.89  Aligned_cols=59  Identities=10%  Similarity=-0.037  Sum_probs=45.1

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEe
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFV  108 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~I  108 (205)
                      ..+||| |..     +||+.|+.+..+|+++      .+.|-.+||++.+++    .+..+-..+|.+  |-+|+.+
T Consensus        41 ~k~VVVdF~A-----~WCgPCk~m~PvleelA~e~~~~v~f~kVDVDe~~e~----a~~y~V~siPT~~fFk~G~~v  108 (160)
T 2av4_A           41 ERLVCIRFGH-----DYDPDCMKMDELLYKVADDIKNFCVIYLVDITEVPDF----NTMYELYDPVSVMFFYRNKHM  108 (160)
T ss_dssp             SSEEEEEEEC-----TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCTT----TTTTTCCSSEEEEEEETTEEE
T ss_pred             CCEEEEEEEC-----CCChhHHHHHHHHHHHHHHccCCcEEEEEECCCCHHH----HHHcCCCCCCEEEEEECCEEE
Confidence            334555 777     9999999999998654      367889999888764    445566789998  6799987

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=96.57  E-value=0.0057  Score=44.54  Aligned_cols=75  Identities=8%  Similarity=0.192  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHh-cCCcEE-EEEeeCCCCCCChHHHHHHHHH---H----hCCCCeEEEEccCCHhHHHHHHHHhCCCCcc
Q psy221           29 TDVQKSIDEMV-KKSKVV-VFMKGVPEAPRCGFSNAVVQIL---R----MHDVPYDSHDVLKDESIRNGIKEYTSWPTIP   99 (205)
Q Consensus        29 ~~~~~~l~~~~-~~~~Vv-lYsk~~~~~~~Cp~C~~ak~lL---~----~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvP   99 (205)
                      ....+.+.... +..+|+ .|..     +||++|.+....|   .    .++..+..+.|+.+......+.+..+-..+|
T Consensus        14 ~~~~~~~~~~~~~~k~vlv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~v~~~P   88 (130)
T 2kuc_A           14 LSFPEALKRAEVEDKLLFVDCFT-----TWCGPCKRLSKVVFKDSLVADYFNRHFVNLKMDMEKGEGVELRKKYGVHAYP   88 (130)
T ss_dssp             CCHHHHHHHHHHHSSCEEEEECC-----TTCTHHHHHHHHGGGCHHHHHHHHHHSEEEEECSSSTTHHHHHHHTTCCSSC
T ss_pred             CCHHHHHHHHHhcCCeEEEEEEC-----CCCccHHHHHHHhcCcHHHHHHHhcCeEEEEEecCCcchHHHHHHcCCCCCC
Confidence            34555554432 334454 4555     9999999988776   2    1222344444443322234566667888899


Q ss_pred             EEee---CCeEe
Q psy221          100 QVFI---NGEFV  108 (205)
Q Consensus       100 qvFI---~G~~I  108 (205)
                      .+++   +|+.+
T Consensus        89 t~~~~d~~G~~~  100 (130)
T 2kuc_A           89 TLLFINSSGEVV  100 (130)
T ss_dssp             EEEEECTTSCEE
T ss_pred             EEEEECCCCcEE
Confidence            9976   67654

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=96.55  E-value=0.0058  Score=44.02  Aligned_cols=61  Identities=13%  Similarity=0.184  Sum_probs=39.8

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHH-------------------HHHHHHhCCCC
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIR-------------------NGIKEYTSWPT   97 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~-------------------~eL~~~~g~~t   97 (205)
                      ..++.|..     +||++|......|+++     ++.+..++++.+++..                   ..+.+..+-..
T Consensus        27 ~~ll~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  101 (136)
T 1zzo_A           27 PAVLWFWA-----PWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ  101 (136)
T ss_dssp             CEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHTTCTTSEEEECTTCHHHHHTTCCS
T ss_pred             eEEEEEEc-----CCChhHHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHcCCCceEEEEcCCcHHHHHcCCCC
Confidence            33455665     8999999988777654     5777777776543221                   22333446678


Q ss_pred             ccEEee---CCeE
Q psy221           98 IPQVFI---NGEF  107 (205)
Q Consensus        98 vPqvFI---~G~~  107 (205)
                      +|.+++   +|+.
T Consensus       102 ~P~~~~id~~g~i  114 (136)
T 1zzo_A          102 QPAYAFVDPHGNV  114 (136)
T ss_dssp             SSEEEEECTTCCE
T ss_pred             CceEEEECCCCCE
Confidence            999877   7775

>4ecj_A Glutathione S-transferase; transferase-like protein, transcription regulation; HET: GSH; 1.76A {Pseudomonas aeruginosa} PDB: 4eci_A*

Probab=96.55  E-value=0.008  Score=49.14  Aligned_cols=71  Identities=15%  Similarity=0.109  Sum_probs=54.7

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeC-C--eEeechhHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFIN-G--EFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~-G--~~IGG~del~~l  117 (205)
                      .++||..     + ||+|.+++-+|+..||+|+.+.|+..  +....++.++....++|.+..+ |  ..|.....|.+.
T Consensus         3 m~~Ly~~-----~-sp~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vPvL~~~dg~~~~l~eS~aI~~Y   76 (244)
T 4ecj_A            3 MIDLYTA-----A-TPNGHKVSIALEEMGLPYRVHALSFDKKEQKAPEFLRINPNGRIPAIVDRDNDDFAVFESGAILIY   76 (244)
T ss_dssp             CEEEEEC-----S-SHHHHHHHHHHHHHTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHHHH
T ss_pred             EEEEecC-----C-CcCHHHHHHHHHHcCCCceEEEecCCCCCcCCHHHHhcCCCCCCCEEEECCCCeEEEecHHHHHHH
Confidence            3788977     6 99999999999999999999988643  2334567777777899999996 4  477777666654


Q ss_pred             Hh
Q psy221          118 HQ  119 (205)
Q Consensus       118 ~e  119 (205)
                      .+
T Consensus        77 L~   78 (244)
T 4ecj_A           77 LA   78 (244)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=96.55  E-value=0.0096  Score=44.00  Aligned_cols=53  Identities=21%  Similarity=0.327  Sum_probs=38.2

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      .+|+| |..     +||++|......|.++      .+.+..+|++.+++    +.+..+-..+|.+++
T Consensus        52 k~vlv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~  111 (141)
T 3hxs_A           52 KPAIVDFYA-----DWCGPCKMVAPILEELSKEYAGKIYIYKVNVDKEPE----LARDFGIQSIPTIWF  111 (141)
T ss_dssp             SCEEEEEEC-----TTCTTHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEE
T ss_pred             CEEEEEEEC-----CCCHHHHHHHHHHHHHHHHhcCceEEEEEECCCCHH----HHHHcCCCCcCEEEE
Confidence            34544 555     9999999998887543      36777888877764    445557788999876

>4id0_A Glutathione S-transferase-like protein YIBF; GST, enzyme function initiative, structural genomics; HET: GSF; 1.10A {Pseudomonas fluorescens} PDB: 4ibp_A*

Probab=96.53  E-value=0.0011  Score=52.64  Aligned_cols=71  Identities=13%  Similarity=0.185  Sum_probs=52.4

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--H-hHHHHHHHHhCCCCccEEe-eCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--E-SIRNGIKEYTSWPTIPQVF-INGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~-~~~~eL~~~~g~~tvPqvF-I~G~~IGG~del~~l~  118 (205)
                      .+.||..     +.||+|.+++-+|+..||+|+.+.|+..  + ....++.++....++|.+. .||..|.....|.+..
T Consensus         2 ~~~Ly~~-----~~s~~~~~v~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   76 (214)
T 4id0_A            2 SLTLFHN-----PASPYVRKVMVLLHETGQLNRVALQASQLSPVAPDAALNQDNPLGKIPALRLDNGQVLYDSRVILDYL   76 (214)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHHTCGGGEEEEECCCCSSSCCSSCCTTCTTCCSSEEECTTSCEECSHHHHHHHH
T ss_pred             ceEEecC-----CCCChHHHHHHHHHHcCCCcceEEeecccCccCCcHHHHhcCCCcCCCeEEecCCcEeecHHHHHHHH
Confidence            3789988     9999999999999999999776655432  1 2223445556667899999 6888887776665543

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=96.49  E-value=0.0064  Score=46.10  Aligned_cols=60  Identities=10%  Similarity=-0.037  Sum_probs=41.8

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe--eCCeEee
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF--INGEFVG  109 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF--I~G~~IG  109 (205)
                      ..+|+| |..     +||++|+.....|++.      ++.+..+|++.+++    +.+..+-..+|.++  .+|+.+.
T Consensus        23 ~k~vlv~F~a-----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~----~~~~~~i~~~Pt~~~~~~G~~v~   91 (142)
T 1qgv_A           23 DRVVVIRFGH-----DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD----FNKMYELYDPCTVMFFFRNKHIM   91 (142)
T ss_dssp             SSEEEEEEEC-----TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTSSCSCSSCEEEEEETTEEEE
T ss_pred             CCEEEEEEEC-----CCCHHHHHHHHHHHHHHHHhCCCeEEEEEccccCHH----HHHHcCCCCCCEEEEEECCcEEE
Confidence            344544 666     9999999998887543      46777888887664    34445677899884  4787663

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.44  E-value=0.0062  Score=44.31  Aligned_cols=56  Identities=20%  Similarity=0.292  Sum_probs=38.8

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----------CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----------HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----------~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ++.|..     +||++|+++...|.+          .++.+..+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        29 lv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~~~   96 (133)
T 1x5d_A           29 MVEFYA-----PWCGHCKNLEPEWAAAASEVKEQTKGKVKLAAVDATVNQV----LASRYGIRGFPTIKIFQKGESP   96 (133)
T ss_dssp             EEEEEC-----TTCHHHHTHHHHHHHHHHHHHHHTTTSEEEEEEETTTCCH----HHHHHTCCSSSEEEEEETTEEE
T ss_pred             EEEEEC-----CCCHHHHhhcHHHHHHHHHHHhhcCCcEEEEEEECCCCHH----HHHhCCCCeeCeEEEEeCCCce
Confidence            344666     999999988776643          346778888877664    334456778999876  67643

>2c4j_A Glutathione S-transferase MU 2; glutathione transferase, multigene family; HET: GSO; 1.35A {Homo sapiens} SCOP: a.45.1.1 c.47.1.5 PDB: 1xw5_A* 1ykc_A* 2ab6_A* 2gtu_A 3gtu_A 3gur_A* 1hna_A* 1hnb_A* 1hnc_A* 1xw6_A* 1xwk_A* 1yj6_A* 2f3m_A* 2dc5_A 1gtu_A 4gtu_A 6gsu_A* 6gsv_A* 6gsw_A* 2gst_A* ...

Probab=96.38  E-value=0.014  Score=46.33  Aligned_cols=70  Identities=11%  Similarity=0.219  Sum_probs=51.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH--h--HHHHHHHHh--C--CCCccEEeeCCeEeechhHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE--S--IRNGIKEYT--S--WPTIPQVFINGEFVGGCDILL  115 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~--~--~~~eL~~~~--g--~~tvPqvFI~G~~IGG~del~  115 (205)
                      +.||..     +.||+|.+++-+|+..||+|+.+.++...  +  ..+.+....  |  ..++|.+..||..|.....|.
T Consensus         3 ~~Ly~~-----~~s~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~g~P~g~vP~L~d~~~~l~eS~aI~   77 (218)
T 2c4j_A            3 MTLGYW-----NIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAIL   77 (218)
T ss_dssp             EEEEEE-----SSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHHH
T ss_pred             cEEEEe-----CCCchhHHHHHHHHHcCCCceEEEeecCcccccchhHHhhhccccCCCCCCCCEEEECCeEeeeHHHHH
Confidence            678887     88999999999999999999998887432  1  122333332  2  458999988888888777666


Q ss_pred             HHH
Q psy221          116 KLH  118 (205)
Q Consensus       116 ~l~  118 (205)
                      +..
T Consensus        78 ~yL   80 (218)
T 2c4j_A           78 RYI   80 (218)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>2x64_A Glutathione-S-transferase; detoxification enzyme; HET: GSH; 2.30A {Xylella fastidiosa}

Probab=96.38  E-value=0.0099  Score=46.74  Aligned_cols=71  Identities=11%  Similarity=0.108  Sum_probs=53.9

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      .+.||..     +. +.|.+++-+|+..||+|+.+.|+.......++.++....++|.+..||..|.....|.+..+
T Consensus         2 ~~~Ly~~-----~~-s~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~eS~aI~~yL~   72 (207)
T 2x64_A            2 HMKLYIM-----PG-ACSLADHILLRWSGSSFDLQFLDHQSMKAPEYLALNPSGAVPALQVGDWVLTQNAAILNYIT   72 (207)
T ss_dssp             CEEEEEC-----TT-STTHHHHHHHHHHTCCEEEEECCTTTTSSHHHHTTCTTCCSCEEEETTEEECCHHHHHHHHH
T ss_pred             eEEEEcC-----CC-CcHHHHHHHHHHcCCCcceEEecccccCChhHHhcCCCCcCCeEeECCEEEeeHHHHHHHHH
Confidence            4678876     54 45899999999999999999987542223456666666789999989988888877666533

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.36  E-value=0.005  Score=49.28  Aligned_cols=70  Identities=19%  Similarity=0.341  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHh-c--CCcE--EEEEeeCCCCC-CChHHHHHHHHHHh-----CCCCeEEEEccCCHhHHHHHHHHhCCCC
Q psy221           29 TDVQKSIDEMV-K--KSKV--VVFMKGVPEAP-RCGFSNAVVQILRM-----HDVPYDSHDVLKDESIRNGIKEYTSWPT   97 (205)
Q Consensus        29 ~~~~~~l~~~~-~--~~~V--vlYsk~~~~~~-~Cp~C~~ak~lL~~-----~gV~~~e~DI~~d~~~~~eL~~~~g~~t   97 (205)
                      ....+.+++++ .  .++|  +.|..     + ||++|++++..|++     -+|.+..+|++. ++. .++.+..|-..
T Consensus         6 ~~~~~~~~~~~~~~~~~~v~lv~f~~-----~~~C~~C~~~~~~~~~la~~~~~v~~~~vd~~~-~~~-~~~~~~~~v~~   78 (226)
T 1a8l_A            6 DADKKVIKEEFFSKMVNPVKLIVFVR-----KDHCQYCDQLKQLVQELSELTDKLSYEIVDFDT-PEG-KELAKRYRIDR   78 (226)
T ss_dssp             HHHHHHHHHHTGGGCCSCEEEEEEEC-----SSSCTTHHHHHHHHHHHHTTCTTEEEEEEETTS-HHH-HHHHHHTTCCS
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEEEec-----CCCCchhHHHHHHHHHHHhhCCceEEEEEeCCC-ccc-HHHHHHcCCCc
Confidence            34455566666 2  3343  45666     8 99999999999976     346778888764 112 34555667789


Q ss_pred             ccEEee--CC
Q psy221           98 IPQVFI--NG  105 (205)
Q Consensus        98 vPqvFI--~G  105 (205)
                      +|.+.+  +|
T Consensus        79 ~Pt~~~~~~g   88 (226)
T 1a8l_A           79 APATTITQDG   88 (226)
T ss_dssp             SSEEEEEETT
T ss_pred             CceEEEEcCC
Confidence            999987  65

>1gsu_A GST, CGSTM1-1, class-MU glutathione S-transferase; detoxification enzyme, S-hexyl glutathione; HET: GTX; 1.94A {Gallus gallus} SCOP: a.45.1.1 c.47.1.5 PDB: 1c72_A*

Probab=96.35  E-value=0.017  Score=46.13  Aligned_cols=70  Identities=14%  Similarity=0.227  Sum_probs=51.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH----hHHHHHHHHh----CCCCccEEeeCCeEeechhHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE----SIRNGIKEYT----SWPTIPQVFINGEFVGGCDILL  115 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~----~~~~eL~~~~----g~~tvPqvFI~G~~IGG~del~  115 (205)
                      .+||.-     +.+|+|.+++-+|+..||+|+.+.++...    ...+++....    ...++|.+..||..|.....|.
T Consensus         2 ~~L~~~-----~~~~~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~   76 (219)
T 1gsu_A            2 VTLGYW-----DIRGLAHAIRLLLEYTETPYQERRYKAGPAPDFDPSDWTNEKEKLGLDFPNLPYLIDGDVKLTQSNAIL   76 (219)
T ss_dssp             EEEEEE-----SSSGGGHHHHHHHHHTTCCEEEEEECCCSTTSCCTHHHHTTGGGSCCSSCCSSEEEETTEEEESHHHHH
T ss_pred             cEEEEe-----CCCchhHHHHHHHHHcCCCceEEEeccCcccccchhhHhhhcccCCCCCCCCCEEEECCEEEecHHHHH
Confidence            467777     78999999999999999999998887432    1224444433    3458999998888888777666


Q ss_pred             HHH
Q psy221          116 KLH  118 (205)
Q Consensus       116 ~l~  118 (205)
                      +..
T Consensus        77 ~yL   79 (219)
T 1gsu_A           77 RYI   79 (219)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=96.29  E-value=0.018  Score=43.91  Aligned_cols=59  Identities=19%  Similarity=0.221  Sum_probs=40.3

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----C-CCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----D-VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----g-V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ..+|+| |..     +||+.|+.....|.+.     + +.+-.+|++.+++    +.+..+-..+|.+++  +|+.+
T Consensus        23 ~k~vlv~F~a-----~WC~~C~~~~p~l~~l~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt~~~~~~G~~v   90 (149)
T 3gix_A           23 EKVLVLRFGR-----DEDPVCLQLDDILSKTSSDLSKMAAIYLVDVDQTAV----YTQYFDISYIPSTVFFFNGQHM   90 (149)
T ss_dssp             SSEEEEEEEC-----TTSHHHHHHHHHHHHHHTTTTTTEEEEEEETTTCCH----HHHHTTCCSSSEEEEEETTEEE
T ss_pred             CCEEEEEEEC-----CCCHHHHHHHHHHHHHHHHccCceEEEEEECCcCHH----HHHHcCCCccCeEEEEECCeEE
Confidence            344554 556     9999999999888653     2 5567778877664    444456677888654  77666

>2dj0_A Thioredoxin-related transmembrane protein 2; AVLA237, CGI-31 protein, TXNDC14, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.25  E-value=0.0072  Score=44.82  Aligned_cols=56  Identities=13%  Similarity=0.195  Sum_probs=39.0

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C---CCCeEEEEccCCHhHHHHHHHHhCCC------CccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H---DVPYDSHDVLKDESIRNGIKEYTSWP------TIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~---gV~~~e~DI~~d~~~~~eL~~~~g~~------tvPqvFI--~G~~I  108 (205)
                      ++.|..     +||++|+.+...|++    +   ++.+..+|++.++++    .+..+-.      .+|.+++  +|+.+
T Consensus        30 lv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~----~~~~~v~~~~~~~~~Pt~~~~~~G~~~  100 (137)
T 2dj0_A           30 IVEFFA-----NWSNDCQSFAPIYADLSLKYNCTGLNFGKVDVGRYTDV----STRYKVSTSPLTKQLPTLILFQGGKEA  100 (137)
T ss_dssp             EEEECC-----TTCSTTTTTHHHHHHHHHHHCSSSCEEEECCTTTCHHH----HHHTTCCCCSSSSCSSEEEEESSSSEE
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHhCCCCeEEEEEeCccCHHH----HHHccCcccCCcCCCCEEEEEECCEEE
Confidence            555666     999999998887754    2   567777787776654    3344555      8998865  77654

>4hz4_A Glutathione-S-transferase; enzyme function initiative; 1.62A {Actinobacillus pleuropneumoniae}

Probab=96.25  E-value=0.011  Score=46.90  Aligned_cols=69  Identities=10%  Similarity=0.092  Sum_probs=54.2

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH---hHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE---SIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~---~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .++||..     +.+ .|.+++-+|+..||+|+.+.|+...   ...+++.++....++|.+..||..+.....|.+.
T Consensus         3 ~~~Ly~~-----~~~-~~~~v~~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~y   74 (217)
T 4hz4_A            3 MITLHYL-----KQS-CSHRIVWLLEALGLDYELKIYDRLEGTGFAPEELKAQHPLGKAPVLQDGDLVLAEGNAIIQH   74 (217)
T ss_dssp             CEEEEEE-----SSS-TTHHHHHHHHHHTCCCEEEEECCCTTTCCCCHHHHTTSTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEeec-----CCC-cHHHHHHHHHHcCCCceEEEEecCcccccCCHHHHhcCCCCCCCEEEECCEeeecHHHHHHH
Confidence            4788877     554 6999999999999999999886542   1245667777777999999999998887776664

>2fhe_A GST, glutathione S-transferase; transferase-substrate complex; HET: GSH; 2.30A {Fasciola hepatica} SCOP: a.45.1.1 c.47.1.5 PDB: 2wrt_A 1fhe_A*

Probab=96.23  E-value=0.016  Score=46.15  Aligned_cols=70  Identities=11%  Similarity=0.077  Sum_probs=50.3

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH---Hh-CCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE---YT-SWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~---~~-g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++.||.-     +.|++|.+++-+|+..||+|+.+.++... ..+.+..   +. -..++|.+..||..|.....|.+..
T Consensus         1 ~~~L~y~-----~~~~~~~~v~~~L~~~gi~ye~~~v~~~~-~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~YL   74 (216)
T 2fhe_A            1 PAKLGYW-----KIRGLQQPVRLLLEYLGEKYEEQIYERDD-GEKWFSKKFELGLDLPNLPYYIDDKCKLTQSLAILRYI   74 (216)
T ss_dssp             CEEEEEE-----SSSTTTHHHHHHHHHTTCCEEEEEECTTC-HHHHHHHTTTSCCSSCCSSEEECSSCEEESHHHHHHHH
T ss_pred             CcEEEEc-----CCCchhHHHHHHHHHcCCCceEEeeCCCc-hhhhhccccccCCCCCCCCEEEECCEEEEeHHHHHHHH
Confidence            4577777     78999999999999999999999887531 1122221   11 3458999987888888777666543

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=96.17  E-value=0.02  Score=45.61  Aligned_cols=51  Identities=16%  Similarity=0.380  Sum_probs=39.1

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC----------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH----------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~----------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      ++.|..     +||++|.+....|+++          ++.+..+|++.+++    +.+..+-..+|.+++
T Consensus       138 ~v~F~a-----~wC~~C~~~~p~~~~l~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~  198 (226)
T 1a8l_A          138 ILVFVT-----PTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE----WADQYNVMAVPKIVI  198 (226)
T ss_dssp             EEEEEC-----SSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH----HHHHTTCCSSCEEEE
T ss_pred             EEEEeC-----CCCCccHHHHHHHHHHHHhcccccCCcEEEEEEEcccCHH----HHHhCCCcccCeEEE
Confidence            566877     9999999998888652          57788888887664    444557778999877

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=96.15  E-value=0.0022  Score=50.70  Aligned_cols=67  Identities=10%  Similarity=0.194  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHh--CCCCccEE
Q psy221           29 TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYT--SWPTIPQV  101 (205)
Q Consensus        29 ~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~--g~~tvPqv  101 (205)
                      ++..+.+.++-....|+.|..     +|||+|+...-.|+++     ++.+..+|++.+++.   ..+..  +...+|.+
T Consensus        43 ~~~~~~l~~~~~k~vvv~F~A-----~WC~pC~~~~P~l~~l~~~~~~v~~~~v~~d~~~~~---~~~~~~~~v~~iPt~  114 (167)
T 1z6n_A           43 SALTERLQRIERRYRLLVAGE-----MWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDD---LRQRLALERIAIPLV  114 (167)
T ss_dssp             HHHHHHHHTCCSCEEEEEECC-----TTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHH---TTTTTTCSSCCSSEE
T ss_pred             HHHHHHHHHhCCCEEEEEEEC-----CCChhHHHHHHHHHHHHHHCCCcEEEEEECCCCHHH---HHHHHHcCCCCcCeE
Confidence            344444433222234556777     9999999999888654     355666666543322   12221  46789986


Q ss_pred             ee
Q psy221          102 FI  103 (205)
Q Consensus       102 FI  103 (205)
                      ++
T Consensus       115 i~  116 (167)
T 1z6n_A          115 LV  116 (167)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3iso_A Putative glutathione transferase; GST; HET: GSH; 1.90A {Clonorchis sinensis}

Probab=96.10  E-value=0.0071  Score=48.18  Aligned_cols=70  Identities=14%  Similarity=0.082  Sum_probs=49.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEcc--CCHhHHHH-HHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVL--KDESIRNG-IKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~--~d~~~~~e-L~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +.||.-     +.|++|.+++-+|+..||+|+.+.|+  ..++.... .....-..++|.+..||..|.....|.+..
T Consensus         3 ~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~d~~~~l~eS~aI~~yL   75 (218)
T 3iso_A            3 PVLGYW-----KIRGLAQPIRLLLEYVGDSYEEHSYGRCDGEKWQNDKHNLGLELPNLPYYKDGNFSLTQSLAILRYI   75 (218)
T ss_dssp             CEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEEETTEEEESHHHHHHHH
T ss_pred             cEEEEe-----CCCcchHHHHHHHHHcCCCceeeccCCCCHHHHHhhchhcCCCCCCCCeEEECCEEEecHHHHHHHH
Confidence            567777     78999999999999999999999986  22222211 111123457999988888888777666543

>3lsz_A Glutathione S-transferase; xenobiotic, biodegradative metabolism, PSI2, NYSGXRC, structural genomics, protein structure initiative; HET: GSH; 1.70A {Rhodobacter sphaeroides}

Probab=96.08  E-value=0.0089  Score=47.72  Aligned_cols=69  Identities=12%  Similarity=0.120  Sum_probs=55.0

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--------H-----hHHHHHHHHhCCCCccEEeeCCeEeec
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--------E-----SIRNGIKEYTSWPTIPQVFINGEFVGG  110 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--------~-----~~~~eL~~~~g~~tvPqvFI~G~~IGG  110 (205)
                      ++||..     +.| +|.+++-+|+..||+|+.+.|+..        .     ....++.++....++|.+..||..|..
T Consensus         3 ~~Ly~~-----~~s-~~~~v~~~L~~~gi~ye~~~v~~~~~~~d~~~~e~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~e   76 (225)
T 3lsz_A            3 LKIYGV-----YRS-RASRPLWLLAELDLPFEHVPVIQANRVAHPHGPEAPLNTASAAYLAVNPLGQIPCLEEEGLILTE   76 (225)
T ss_dssp             CEEESC-----SSS-TTHHHHHHHHHHTCCCEEECCBCGGGSSCTTSTTCCSBTTCHHHHTTCTTCCSCEEEETTEEEES
T ss_pred             EEEEeC-----CCC-chHHHHHHHHHcCCCcEEEEeecccccccccccccccccCCHHHHhhCcCCCCCeEEECCEEEEc
Confidence            678888     889 999999999999999999988642        1     134567777777899999999998888


Q ss_pred             hhHHHHHH
Q psy221          111 CDILLKLH  118 (205)
Q Consensus       111 ~del~~l~  118 (205)
                      ...|.+..
T Consensus        77 S~aI~~yL   84 (225)
T 3lsz_A           77 SLAITLHI   84 (225)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77666543

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=96.03  E-value=0.023  Score=43.58  Aligned_cols=76  Identities=12%  Similarity=0.060  Sum_probs=44.4

Q ss_pred             ChHHHHHHHHHhcC-CcEEE-EEeeCCCCCCChHHHHH-------HHHHHhC--CCCeEEEEccCCHhH-----------
Q psy221           28 STDVQKSIDEMVKK-SKVVV-FMKGVPEAPRCGFSNAV-------VQILRMH--DVPYDSHDVLKDESI-----------   85 (205)
Q Consensus        28 ~~~~~~~l~~~~~~-~~Vvl-Ysk~~~~~~~Cp~C~~a-------k~lL~~~--gV~~~e~DI~~d~~~-----------   85 (205)
                      ..++++.+...... .+|+| |..     +||++|++.       .++-+.+  ++.+..+|++.+++.           
T Consensus        33 ~~~~~~~~~~a~~~gk~vlv~F~A-----~WC~~C~~~~~~~~~~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~  107 (172)
T 3f9u_A           33 FDDYDLGMEYARQHNKPVMLDFTG-----YGCVNCRKMELAVWTDPKVSSIINNDYVLITLYVDNKTPLTEPVKIMENGT  107 (172)
T ss_dssp             BSCHHHHHHHHHHTTCCEEEEEEC-----TTCHHHHHHHHHTTTSHHHHHHHHHHCEEEEEETTCCCEEEEEEEEEETTE
T ss_pred             hhhHHHHHHHHHHcCCeEEEEEEC-----CCCHHHHHHHHHhcCCHHHHHHhcCCEEEEEEecCcccccchhhhhhhcch
Confidence            44566666655543 34555 556     999999986       2222222  567777787655422           


Q ss_pred             -----------HHHHHHHhCCCCccEEe-e--CCeEe
Q psy221           86 -----------RNGIKEYTSWPTIPQVF-I--NGEFV  108 (205)
Q Consensus        86 -----------~~eL~~~~g~~tvPqvF-I--~G~~I  108 (205)
                                 ........+-..+|.++ +  +|+.+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~v~~~Pt~~lid~~G~~~  144 (172)
T 3f9u_A          108 ERTLRTVGDKWSYLQRVKFGANAQPFYVLIDNEGNPL  144 (172)
T ss_dssp             EEEEEEHHHHHHHHHHHHHSCCCSSEEEEECTTSCBS
T ss_pred             hhhhhhhhhhhhHHHHHHcCCCCcceEEEECCCCCEE
Confidence                       11113455778899974 4  57543

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=96.02  E-value=0.016  Score=42.25  Aligned_cols=53  Identities=17%  Similarity=0.111  Sum_probs=38.1

Q ss_pred             CcE-EEEEeeCCCCCCChHHHHHHHHHHhC-----------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           42 SKV-VVFMKGVPEAPRCGFSNAVVQILRMH-----------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        42 ~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~-----------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      ..| |.|..     +||++|+.....|+++           ++.+-.+|++.+++    +.+..+-..+|.+++
T Consensus        34 ~~vlv~F~a-----~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~   98 (127)
T 3h79_A           34 KDVFVLYYV-----PWSRHSVAAMRLWDDLSMSQSQKRNHLTFVAARIDGEKYPD----VIERMRVSGFPTMRY   98 (127)
T ss_dssp             CEEEEEEEC-----TTCHHHHHHHHHHHHHHHHHHTSTTTTTEEEEEEETTTCHH----HHHHTTCCSSSEEEE
T ss_pred             CCEEEEEEC-----CccHHHHHHhHHHHHHHHHHHhcccCCCeEEEEEEccccHh----HHHhcCCccCCEEEE
Confidence            444 44666     9999999999988764           35677888877654    445557778998855

>3c8e_A YGHU, glutathione S-transferase homologue; glutathione transferase homologue, E. coli; HET: GSH; 1.50A {Escherichia coli}

Probab=95.98  E-value=0.023  Score=47.85  Aligned_cols=71  Identities=14%  Similarity=0.089  Sum_probs=53.9

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCC----eEee
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFING----EFVG  109 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G----~~IG  109 (205)
                      +.+.||..     . ||+|.+++-+|+..      ||+|+.+.|+..  +....++.++....+||.+..+|    ..|-
T Consensus        43 ~~~~Ly~~-----~-sp~~~rvr~~L~e~~~~g~kgi~ye~~~v~~~~~e~~~~~~~~~nP~gkVPvL~~~~g~~~~~l~  116 (288)
T 3c8e_A           43 HPLQLYSL-----G-TPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIPALRDHTHNPPIRVF  116 (288)
T ss_dssp             SSEEEEEC-----S-SHHHHHHHHHHHHHHHTTCGGGCEEEEECCGGGTGGGBHHHHHHCTTCCSCEEEETTSSSCEEEE
T ss_pred             CceEEecC-----C-CCChHHHHHHHHHhhhcccCCCCcEEEEeccccccccCHHHHHhCCCCCCCEEEeCCCCCceEEe
Confidence            46899965     4 99999999999998      999999888643  22335666777677999999875    6777


Q ss_pred             chhHHHHHH
Q psy221          110 GCDILLKLH  118 (205)
Q Consensus       110 G~del~~l~  118 (205)
                      ....|.+..
T Consensus       117 ES~aI~~YL  125 (288)
T 3c8e_A          117 ESGSILLYL  125 (288)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            766655543

>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13

Probab=95.97  E-value=0.027  Score=43.39  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=24.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHH----HHHhC----CCCeEEEEcc
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQ----ILRMH----DVPYDSHDVL   80 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~----lL~~~----gV~~~e~DI~   80 (205)
                      .|++|+.     .+||+|.+...    +++++    +|.+..+++.
T Consensus        30 ~i~~f~D-----~~Cp~C~~~~~~~~~~~~~~~~~~~v~~~~~~~~   70 (175)
T 1z6m_A           30 KMIEFIN-----VRCPYCRKWFEESEELLAQSVKSGKVERIIKLFD   70 (175)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             EEEEEEC-----CCCcchHHHHHHHHHHHHHHhhCCcEEEEEEeCC
Confidence            5777888     99999999884    55554    5777777764

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.96  E-value=0.018  Score=41.70  Aligned_cols=51  Identities=20%  Similarity=0.295  Sum_probs=37.0

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----CC--CCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----HD--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      ++.|..     +||++|++....|++    +.  +.+..+|++.+++    +.+..+-..+|.+++
T Consensus        39 lv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~   95 (130)
T 2dml_A           39 LVEFYA-----PWCGHCQRLTPEWKKAATALKDVVKVGAVNADKHQS----LGGQYGVQGFPTIKI   95 (130)
T ss_dssp             EEEEEC-----TTCSTTGGGHHHHHHHHHHTTTTSEEEEEETTTCHH----HHHHHTCCSSSEEEE
T ss_pred             EEEEEC-----CCCHHHHhhCHHHHHHHHHhcCceEEEEEeCCCCHH----HHHHcCCCccCEEEE
Confidence            455666     999999998887754    22  6777888877764    344456778999976

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=94.95  E-value=0.0012  Score=45.75  Aligned_cols=58  Identities=22%  Similarity=0.368  Sum_probs=38.9

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      -++.|..     +|||+|......|++.      ++.+..+|++.+++    +.+..+-..+|.+++  +|+.+.
T Consensus        22 ~~v~f~~-----~~C~~C~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~v~~~Pt~~~~~~g~~~~   87 (106)
T 2yj7_A           22 VLVDFWA-----PWCGPCRMIAPIIEELAKEYEGKVKVVKVNVDENPN----TAAQYGIRSIPTLLLFKNGQVVD   87 (106)
Confidence            3455666     9999999999888654      35555666665544    333445667899877  777553

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=95.94  E-value=0.038  Score=40.99  Aligned_cols=63  Identities=16%  Similarity=0.226  Sum_probs=39.4

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHH------------------HHHHHhCC
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRN------------------GIKEYTSW   95 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~------------------eL~~~~g~   95 (205)
                      ..++| |..     +||++|.+....|.++       ++.+..++++.+++..+                  ++.+..+-
T Consensus        27 k~vlv~F~~-----~~C~~C~~~~~~l~~~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  101 (151)
T 2f9s_A           27 KGVFLNFWG-----TWCEPCKKEFPYMANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDAYDV  101 (151)
T ss_dssp             SEEEEEEEC-----TTCHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCHHHHHHHHHHHTCCSCEEEETTSHHHHHTTC
T ss_pred             CEEEEEEEC-----CCCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHHHHcCCCceEEECCchHHHHhcCC
Confidence            34444 555     8999999877766432       57777777765542211                  34444566


Q ss_pred             CCccEEe-e--CCeEee
Q psy221           96 PTIPQVF-I--NGEFVG  109 (205)
Q Consensus        96 ~tvPqvF-I--~G~~IG  109 (205)
                      ..+|.++ |  +|+.+.
T Consensus       102 ~~~P~~~lid~~G~i~~  118 (151)
T 2f9s_A          102 SPLPTTFLINPEGKVVK  118 (151)
T ss_dssp             CSSCEEEEECTTSEEEE
T ss_pred             CCCCeEEEECCCCcEEE
Confidence            7899965 4  676554

>3gv1_A Disulfide interchange protein; neisseria gonorrhoeae (strain 700825 / FA 1090), DSBC, structural genomics, unknown funct 2; 2.00A {Neisseria gonorrhoeae}

Probab=95.86  E-value=0.037  Score=42.71  Aligned_cols=33  Identities=27%  Similarity=0.375  Sum_probs=26.0

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCC-CCeEEEEc
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHD-VPYDSHDV   79 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~g-V~~~e~DI   79 (205)
                      ..|++|+.     ++||+|.++...|++++ |.+..+++
T Consensus        16 ~~vv~f~D-----~~Cp~C~~~~~~l~~l~~v~v~~~~~   49 (147)
T 3gv1_A           16 LKVAVFSD-----PDCPFCKRLEHEFEKMTDVTVYSFMM   49 (147)
T ss_dssp             EEEEEEEC-----TTCHHHHHHHHHHTTCCSEEEEEEEC
T ss_pred             EEEEEEEC-----CCChhHHHHHHHHhhcCceEEEEEEc
Confidence            45788988     99999999999998874 45555554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=95.85  E-value=0.012  Score=48.99  Aligned_cols=58  Identities=22%  Similarity=0.291  Sum_probs=42.1

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      .+|+| |..     +||++|+.....|.+.      .+.+..+|++.++    ++....+-..+|.+++  +|+.+
T Consensus        27 ~~v~v~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~----~~~~~~~v~~~Pt~~~~~~G~~~   93 (287)
T 3qou_A           27 TPVLFYFWS-----ERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQ----MIAAQFGLRAIPTVYLFQNGQPV   93 (287)
T ss_dssp             SCEEEEEEC-----TTCTTTTTTHHHHHHHHHHHTSSSEEEEEETTTCH----HHHHTTTCCSSSEEEEEETTEEE
T ss_pred             CeEEEEEEC-----CCChHHHHHHHHHHHHHHHcCCCeEEEEEeCccCH----HHHHHcCCCCCCeEEEEECCEEE
Confidence            44544 656     9999999988777543      3778888988776    4445567788999866  88654

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=95.83  E-value=0.026  Score=40.69  Aligned_cols=60  Identities=23%  Similarity=0.268  Sum_probs=38.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhH-H-----------------HHHHHHhCCCCcc
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESI-R-----------------NGIKEYTSWPTIP   99 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~-~-----------------~eL~~~~g~~tvP   99 (205)
                      .++.|..     +||++|.+....|.++     ++.+-.++++.+++. +                 .++.+..+-..+|
T Consensus        27 ~lv~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P  101 (136)
T 1lu4_A           27 AVLWFWT-----PWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYNVPWQP  101 (136)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHTCCSEEEECTTSHHHHHTTCCSSS
T ss_pred             EEEEEEC-----CcChhHHHHHHHHHHHHHHCCCcEEEEEEcCCCHHHHHHHHHHcCCCceEEECCchhHHHhcCCCCCC
Confidence            3444665     8999999988777543     567777777664322 2                 1233344667889


Q ss_pred             EEee---CCeE
Q psy221          100 QVFI---NGEF  107 (205)
Q Consensus       100 qvFI---~G~~  107 (205)
                      .+++   +|+.
T Consensus       102 ~~~lid~~G~i  112 (136)
T 1lu4_A          102 AFVFYRADGTS  112 (136)
T ss_dssp             EEEEECTTSCE
T ss_pred             EEEEECCCCcE
Confidence            9876   6765

>3uar_A Glutathione S-transferase; GSH binding site; HET: GSH; 2.60A {Methylococcus capsulatus} PDB: 3uap_A*

Probab=95.80  E-value=0.013  Score=47.21  Aligned_cols=69  Identities=13%  Similarity=0.206  Sum_probs=51.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH---hHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE---SIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~---~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~  118 (205)
                      +.||..     +.+ .|.+++-+|+..||+|+.+.|+...   ...+++.++....++|.+.. ||..|.....|.+..
T Consensus         3 ~~Ly~~-----~~s-~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~eS~aI~~YL   75 (227)
T 3uar_A            3 MKLYYF-----PGA-CSLAPHIVLREAGLDFELENVDLGTKKTGSGADFLQVNPKGYVPALQLDDGQVLTEDQVILQYL   75 (227)
T ss_dssp             EEEEEC-----TTS-TTHHHHHHHHHHTCCEEEEEEETTTTEETTCCBHHHHCTTCCSCEEECTTCCEEECHHHHHHHH
T ss_pred             EEEecC-----CCc-chHHHHHHHHHcCCCceEEEeccCcCcccCCHHHHHhCCCCCCCeEEECCCCEEecHHHHHHHH
Confidence            678877     665 4999999999999999988876542   12245666767779999998 577887777766653

>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal fibrinogen gamma...; gamma chain integrin fragment; HET: GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1 c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A* 1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A* 3cru_A* 3d0z_A*

Probab=95.76  E-value=0.035  Score=44.96  Aligned_cols=69  Identities=12%  Similarity=0.114  Sum_probs=49.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH---Hh-CCCCccEEeeCCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE---YT-SWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~---~~-g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ..||.-     +.+++|.+++-+|+..||+|+.+.++... ..+.+..   +. -...+|.+..||..|.....|.+..
T Consensus         2 ~~L~y~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~-~~~~~~~~~~~~~P~g~vP~L~d~g~~l~eS~aI~~YL   74 (234)
T 1dug_A            2 PILGYW-----KIKGLVQPTRLLLEYLEEKYEEHLYERDE-GDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYI   74 (234)
T ss_dssp             CEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTC-HHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHHH
T ss_pred             cEEEEc-----CCCCchHHHHHHHHHcCCCceEEEeCCCc-hhhHhhhccccCCCCCCCCEEEECCEEEecHHHHHHHH
Confidence            467777     78999999999999999999999887531 1122222   11 3458999987788887776666543

>1a0r_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; HET: FAR; 2.80A {Bos taurus} SCOP: c.47.1.6 PDB: 1b9y_C 1b9x_C

Probab=95.75  E-value=0.0076  Score=50.70  Aligned_cols=120  Identities=13%  Similarity=0.066  Sum_probs=65.5

Q ss_pred             hhHHHHhhHHHhhhhhhhcC--CCCCCCh--HHHHHHHHHh-c---CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC---
Q psy221            3 TFLQRCMLPRLAINSRFHNA--WRTPYST--DVQKSIDEMV-K---KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH---   70 (205)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~~~l~~~~-~---~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~---   70 (205)
                      .||+......++....-...  .......  .... +.+.+ +   ...|+| |..     +||++|+.+...|..+   
T Consensus        88 ~fL~~~r~~Rl~el~~~~~~~~~~G~V~ei~s~~~-f~~~v~~~~~~k~VvV~Fya-----~wC~~Ck~l~p~l~~La~~  161 (245)
T 1a0r_P           88 NCLRKYRRQCMQDMHQKLSFGPRYGFVYELESGEQ-FLETIEKEQKITTIVVHIYE-----DGIKGCDALNSSLICLAAE  161 (245)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCCCSEEECCSHHH-HHHHHHSSCTTCEEEEEEEC-----TTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCCeEEEeCCHHH-HHHHHHHhcCCCEEEEEEEC-----CCChHHHHHHHHHHHHHHH
Confidence            35666666555555433221  1122211  1233 33333 2   345555 555     9999999999888653   


Q ss_pred             --CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEeechhHHHHH----HhcccHHHHHhhcCCc
Q psy221           71 --DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVGGCDILLKL----HQSGELVEQLEKGDQK  133 (205)
Q Consensus        71 --gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IGG~del~~l----~e~GeL~~~L~~~~~~  133 (205)
                        +|.|-.+|++.     ..+....+-..+|.+++  +|+.++-+.....+    .....|..+|...++.
T Consensus       162 ~~~v~f~kVd~d~-----~~l~~~~~I~~~PTll~~~~G~~v~~~vG~~~~~g~~~~~e~Le~~L~~~g~l  227 (245)
T 1a0r_P          162 YPMVKFCKIKASN-----TGAGDRFSSDVLPTLLVYKGGELLSNFISVTEQLAEEFFTGDVESFLNEYGLL  227 (245)
T ss_dssp             CTTSEEEEEEHHH-----HCCTTSSCTTTCSEEEEEETTEEEEEETTGGGGSCTTCCHHHHHHHHHTTTCS
T ss_pred             CCCCEEEEEeCCc-----HHHHHHCCCCCCCEEEEEECCEEEEEEeCCcccccccccHHHHHHHHHHcCCC
Confidence              46777777743     22333446677888755  88765433222111    0112588888887654

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=95.69  E-value=0.062  Score=39.97  Aligned_cols=57  Identities=12%  Similarity=0.163  Sum_probs=37.4

Q ss_pred             CCChHHHHHHHHHHhC-------CCCeEEEEccCCHhH---------------------HHHHHHHhCCCCccEEee---
Q psy221           55 PRCGFSNAVVQILRMH-------DVPYDSHDVLKDESI---------------------RNGIKEYTSWPTIPQVFI---  103 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~---------------------~~eL~~~~g~~tvPqvFI---  103 (205)
                      +||+.|......|.++       ++.+..++++.+++.                     ...+.+..|-..+|.+++   
T Consensus        39 ~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v~~~P~~~lid~  118 (152)
T 2lrn_A           39 AGCSWCRKETPYLLKTYNAFKDKGFTIYGVSTDRREEDWKKAIEEDKSYWNQVLLQKDDVKDVLESYCIVGFPHIILVDP  118 (152)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHTTTTEEEEEEECCSCHHHHHHHHHHHTCCSEEEEECHHHHHHHHHHTTCCSSCEEEEECT
T ss_pred             CCChhHHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHHHhCCCCeEEecccchhHHHHHHhCCCcCCeEEEECC
Confidence            8999999877666432       456666666654322                     245555667788999755   


Q ss_pred             CCeEeech
Q psy221          104 NGEFVGGC  111 (205)
Q Consensus       104 ~G~~IGG~  111 (205)
                      +|+.+...
T Consensus       119 ~G~i~~~~  126 (152)
T 2lrn_A          119 EGKIVAKE  126 (152)
T ss_dssp             TSEEEEEC
T ss_pred             CCeEEEee
Confidence            68776553

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=95.66  E-value=0.011  Score=46.06  Aligned_cols=72  Identities=10%  Similarity=0.168  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHhc-CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCcc
Q psy221           29 TDVQKSIDEMVK-KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIP   99 (205)
Q Consensus        29 ~~~~~~l~~~~~-~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvP   99 (205)
                      .++++.+.++.. ..+|+| |..     +||++|+.+...+.+.       +..|..++|+.++..   +....+...+|
T Consensus        31 ~~~~~al~~A~~~~KpVlV~F~A-----~WC~~Ck~m~p~~~~~~~~~~~~~~~fv~V~vD~e~~~---~~~~~~v~~~P  102 (151)
T 3ph9_A           31 QTYEEGLFYAQKSKKPLMVIHHL-----EDCQYSQALKKVFAQNEEIQEMAQNKFIMLNLMHETTD---KNLSPDGQYVP  102 (151)
T ss_dssp             SSHHHHHHHHHHHTCCEEEEECC-----TTCHHHHHHHHHHHHCHHHHHHHHHTCEEEEESSCCSC---GGGCTTCCCSS
T ss_pred             hCHHHHHHHHHHcCCcEEEEEEC-----CCCHhHHHHHHHHhcCHHHHHHhhcCeEEEEecCCchh---hHhhcCCCCCC
Confidence            456777776664 445555 556     9999999988877642       246888888643211   12223557889


Q ss_pred             EEee---CCeEe
Q psy221          100 QVFI---NGEFV  108 (205)
Q Consensus       100 qvFI---~G~~I  108 (205)
                      .+++   +|+.+
T Consensus       103 T~~f~~~~G~~v  114 (151)
T 3ph9_A          103 RIMFVDPSLTVR  114 (151)
T ss_dssp             EEEEECTTSCBC
T ss_pred             EEEEECCCCCEE
Confidence            9855   56543

>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6

Probab=95.65  E-value=0.013  Score=47.95  Aligned_cols=120  Identities=11%  Similarity=0.065  Sum_probs=63.9

Q ss_pred             hhHHHHhhHHHhhhhhhhcCC--CCCCCh--HHHHHHHHHhcC---CcEEE-EEeeCCCCCCChHHHHHHHHHHhC----
Q psy221            3 TFLQRCMLPRLAINSRFHNAW--RTPYST--DVQKSIDEMVKK---SKVVV-FMKGVPEAPRCGFSNAVVQILRMH----   70 (205)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~---~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~----   70 (205)
                      .||+......++...+-....  ..+...  ..+.....+.+.   ..|+| |..     +||++|..+...|..+    
T Consensus        75 ~fl~~~r~~Rl~el~~~~~~~~~~g~v~~i~~~~~f~~~v~~~~~~k~vvV~F~a-----~wC~~C~~l~p~l~~la~~~  149 (217)
T 2trc_P           75 GCLRKYRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYE-----DGVRGCDALNSSLECLAAEY  149 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCCCCSEEECCSHHHHHHHHHHSCTTCEEEEEEEC-----TTSTTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEEC-----CCCccHHHHHHHHHHHHHHC
Confidence            466666665555554332211  122111  223333333232   34544 555     9999999999999763    


Q ss_pred             -CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEeechhHHHHH----HhcccHHHHHhhcCC
Q psy221           71 -DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVGGCDILLKL----HQSGELVEQLEKGDQ  132 (205)
Q Consensus        71 -gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IGG~del~~l----~e~GeL~~~L~~~~~  132 (205)
                       +|.|..+|++ ++    .+....+-..+|.+++  +|+.++-+.....+    ....+|..+|...++
T Consensus       150 ~~v~f~~vd~~-~~----~l~~~~~i~~~PTl~~~~~G~~v~~~~G~~~~~g~~~~~~~Le~~L~~~g~  213 (217)
T 2trc_P          150 PMVKFCKIRAS-NT----GAGDRFSSDVLPTLLVYKGGELISNFISVAEQFAEDFFAADVESFLNEYGL  213 (217)
T ss_dssp             TTSEEEEEEHH-HH----TCSTTSCGGGCSEEEEEETTEEEEEETTGGGGSCSSCCHHHHHHHHHTTTC
T ss_pred             CCeEEEEEECC-cH----HHHHHCCCCCCCEEEEEECCEEEEEEeCCcccCcccCCHHHHHHHHHHcCC
Confidence             4667777775 22    2333446667897644  88766433222211    001357777776543

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=95.63  E-value=0.056  Score=43.17  Aligned_cols=64  Identities=22%  Similarity=0.390  Sum_probs=43.7

Q ss_pred             HHHhcC-CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-------C--CCeEEEEccCCHhHHHHHHHHhCCCCccEEee-
Q psy221           36 DEMVKK-SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-------D--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-  103 (205)
Q Consensus        36 ~~~~~~-~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-------g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-  103 (205)
                      ++++.. ..|+| |..     +||++|+.....|.++       +  +.+..+|++.+++    +.+..+-..+|.+++ 
T Consensus        26 ~~~~~~~~~v~v~F~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~   96 (241)
T 3idv_A           26 DNFVADKDTVLLEFYA-----PWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASV----LASRFDVSGYPTIKIL   96 (241)
T ss_dssp             HHHHTTCSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHHHTSSSCCCEEEEETTTCHH----HHHHTTCCSSSEEEEE
T ss_pred             HHHHhcCCeEEEEEEC-----CCCHHHHHhhHHHHHHHHHHhhcCCceEEEEEeccCCHH----HHHhcCCCcCCEEEEE
Confidence            344443 34444 556     9999999998777543       2  7888889887764    445567778999865 


Q ss_pred             -CCeEe
Q psy221          104 -NGEFV  108 (205)
Q Consensus       104 -~G~~I  108 (205)
                       +|+.+
T Consensus        97 ~~g~~~  102 (241)
T 3idv_A           97 KKGQAV  102 (241)
T ss_dssp             ETTEEE
T ss_pred             cCCCcc
Confidence             67554

>1n2a_A Glutathione S-transferase; HET: GTS; 1.90A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5 PDB: 1a0f_A*

Probab=95.59  E-value=0.01  Score=46.50  Aligned_cols=68  Identities=15%  Similarity=0.145  Sum_probs=49.9

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH---hHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE---SIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLH  118 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~---~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~  118 (205)
                      .||..     +.|+ |.+++-+|+..||+|+.+.++...   ...+++.+.+...++|.+.+ ||..|.....|.+..
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL   73 (201)
T 1n2a_A            2 KLFYK-----PGAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYL   73 (201)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             eeecC-----CCcc-hHHHHHHHHHcCCCCeeEEEeCCCccccCCHHHHhhCcCCCCCeEEecCCcEEecHHHHHHHH
Confidence            57776     7775 999999999999999988876432   11234555666779999987 677887777666653

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=95.49  E-value=0.054  Score=43.67  Aligned_cols=58  Identities=19%  Similarity=0.351  Sum_probs=41.3

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC----C--CCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH----D--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~----g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      ..|+| |..     +||++|+.....|.++    +  +.+..+|++.++++    .+..+-..+|.+++  +|+.+
T Consensus        31 k~vvv~F~a-----~wC~~C~~~~p~l~~l~~~~~~~v~~~~vd~d~~~~l----~~~~~v~~~Pt~~~~~~G~~~   97 (222)
T 3dxb_A           31 GAILVDFWA-----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT----APKYGIRGIPTLLLFKNGEVA   97 (222)
T ss_dssp             SCEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCTTT----GGGGTCCSBSEEEEEETTEEE
T ss_pred             CEEEEEEEC-----CcCHHHHHHHHHHHHHHHHhcCCcEEEEEECCCCHHH----HHHcCCCcCCEEEEEECCeEE
Confidence            34544 556     9999999998887543    2  67788888877653    34457778999877  78654

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=95.47  E-value=0.039  Score=45.53  Aligned_cols=33  Identities=27%  Similarity=0.279  Sum_probs=24.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHH----hCCCCeEEEEcc
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILR----MHDVPYDSHDVL   80 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~----~~gV~~~e~DI~   80 (205)
                      .|++|+.     ++||+|.+....|.    .-+|.+..+++.
T Consensus       100 ~v~~F~D-----~~Cp~C~~~~~~l~~~~~~g~v~v~~~~~p  136 (241)
T 1v58_A          100 IVYVFAD-----PFCPYCKQFWQQARPWVDSGKVQLRTLLVG  136 (241)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             EEEEEEC-----CCChhHHHHHHHHHHHHhCCcEEEEEEECC
Confidence            4777988     99999999966554    335777777763

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=95.47  E-value=0.068  Score=39.28  Aligned_cols=38  Identities=13%  Similarity=0.214  Sum_probs=24.5

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHh----------CCCCeEEEEccCCH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRM----------HDVPYDSHDVLKDE   83 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----------~gV~~~e~DI~~d~   83 (205)
                      ..|+|+.-+    +||++|......|.+          .++.+--++++.+.
T Consensus        32 k~vll~F~a----~wC~~C~~~~~~l~~~~~l~~~~~~~~~~vi~i~~d~~~   79 (142)
T 3eur_A           32 EYTLLFINN----PGCHACAEMIEGLKASPVINGFTAAKKLKVLSIYPDEEL   79 (142)
T ss_dssp             SEEEEEECC----SSSHHHHHHHHHHHHCHHHHHHHHTTSEEEEEEECSSCH
T ss_pred             CEEEEEEEC----CCCccHHHHHHHHhhhHHHHHHhccCCeEEEEEEcCCCH
Confidence            445554332    899999887666655          45666666766553

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=94.45  E-value=0.0024  Score=46.65  Aligned_cols=57  Identities=14%  Similarity=0.227  Sum_probs=34.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHH---Hh----CC--CCeEEEEccCCHhHHHHHHHHhCCCCccEEee----CCeE
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQIL---RM----HD--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI----NGEF  107 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL---~~----~g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI----~G~~  107 (205)
                      ++.|..     +||++|+.....|   ..    ++  +.+..+|++.  +...++.+..+-..+|.+++    +|+.
T Consensus        23 lv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~~~v~~~Pt~~~~d~~~G~~   92 (130)
T 2lst_A           23 MVYFHS-----EHCPYCQQMNTFVLSDPGVSRLLEARFVVASVSVDT--PEGQELARRYRVPGTPTFVFLVPKAGAW   92 (130)
Confidence            344666     9999999988766   32    22  3344445432  22345555567778999866    4665

>2pvq_A Glutathione S-transferase; xenobiotics detoxification, H-site; HET: GSH; 1.80A {Ochrobactrum anthropi} PDB: 2nto_A*

Probab=95.45  E-value=0.014  Score=45.67  Aligned_cols=69  Identities=16%  Similarity=0.134  Sum_probs=51.1

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHh---HHHHHHHHhCCCCccEEe-eCCeEeechhHHHHHHh
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES---IRNGIKEYTSWPTIPQVF-INGEFVGGCDILLKLHQ  119 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~---~~~eL~~~~g~~tvPqvF-I~G~~IGG~del~~l~e  119 (205)
                      .||..     +.|+ |.+++-+|+..||+|+.+.++....   ...++.++....++|.+. -||..|.....|.+..+
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL~   74 (201)
T 2pvq_A            2 KLYYK-----VGAA-SLAPHIILSEAGLPYELEAVDLKAKKTADGGDYFAVNPRGAVPALEVKPGTVITQNAAILQYIG   74 (201)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHHTCCCEEEECBTTTTBCTTSCBGGGTCTTCCSCEEEEETTEEEESHHHHHHHHH
T ss_pred             eeeeC-----CCcc-HHHHHHHHHhcCCCceEEEecccccCCCCCHHHHhhCcCCCCCEEEeCCCCEEehHHHHHHHHH
Confidence            57777     7786 9999999999999999998874321   123445566667899998 57888887776666543

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=95.43  E-value=0.046  Score=39.77  Aligned_cols=63  Identities=8%  Similarity=0.253  Sum_probs=38.7

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhC----C--CCeEEEEccCC-----H-hHH-----------------HHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH----D--VPYDSHDVLKD-----E-SIR-----------------NGIKEY   92 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~----g--V~~~e~DI~~d-----~-~~~-----------------~eL~~~   92 (205)
                      ..|+.|..     +||++|.+....|.++    +  +.+..++++..     + +.+                 ..+.+.
T Consensus        31 ~~lv~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  105 (148)
T 2b5x_A           31 PTLIHFWS-----ISCHLCKEAMPQVNEFRDKYQDQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDA  105 (148)
T ss_dssp             CEEEEEEC-----TTCHHHHHHHHHHHHHHHHHTTTSEEEEEECCCSTTTSSHHHHHHHHHHTTCCSCEEECSSCHHHHH
T ss_pred             EEEEEEEc-----CCCHHHHHHhHHHHHHHHHhcCCcEEEEEEcCCCccccCHHHHHHHHHHcCCCcceEECCchhHHHH
Confidence            33455665     9999999887777542    2  66666666431     1 111                 234444


Q ss_pred             hCCCCccEEee---CCeEee
Q psy221           93 TSWPTIPQVFI---NGEFVG  109 (205)
Q Consensus        93 ~g~~tvPqvFI---~G~~IG  109 (205)
                      .+-..+|.+++   +|+.+.
T Consensus       106 ~~v~~~P~~~lid~~G~i~~  125 (148)
T 2b5x_A          106 FENEYVPAYYVFDKTGQLRH  125 (148)
T ss_dssp             TCCCCSSEEEEECTTCBEEE
T ss_pred             hCCCCCCEEEEECCCCcEEE
Confidence            56678999977   776554

>3h93_A Thiol:disulfide interchange protein DSBA; disulfide bond, redox-active center, transcription regulator; HET: MSE GOL; 1.50A {Pseudomonas aeruginosa PAO1} SCOP: c.47.1.0

Probab=95.41  E-value=0.084  Score=41.24  Aligned_cols=32  Identities=16%  Similarity=0.086  Sum_probs=23.3

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHh----CC--CCeEEEEc
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRM----HD--VPYDSHDV   79 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~g--V~~~e~DI   79 (205)
                      .|+.|..     .+||+|.+....|.+    ++  |.|..+.+
T Consensus        28 ~i~~f~d-----~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (192)
T 3h93_A           28 EVVELFW-----YGCPHCYAFEPTIVPWSEKLPADVHFVRLPA   65 (192)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEEC-----CCChhHHHhhHHHHHHHHhCCCCeEEEEEeh
Confidence            5777888     999999999888754    33  44555555

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=95.37  E-value=0.068  Score=42.55  Aligned_cols=58  Identities=17%  Similarity=0.255  Sum_probs=41.3

Q ss_pred             CCcE-EEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeE
Q psy221           41 KSKV-VVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEF  107 (205)
Q Consensus        41 ~~~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~  107 (205)
                      ...| |.|..     +||++|......|++.      .+.+-.+|++.+++    +....+-..+|.+++  +|+.
T Consensus       114 ~~~vlv~F~a-----~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~G~~  180 (210)
T 3apq_A          114 GELWFVNFYS-----PGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRM----LCRMKGVNSYPSLFIFRSGMA  180 (210)
T ss_dssp             SCCEEEEEEC-----TTCHHHHHHHHHHHHHHHHTBTTBEEEEEETTTCHH----HHHHTTCCSSSEEEEECTTSC
T ss_pred             CCcEEEEEeC-----CCChhHHHHHHHHHHHHHHhcCceEEEEEECCccHH----HHHHcCCCcCCeEEEEECCCc
Confidence            3444 44666     9999999998888643      36777888877664    444567788999876  7754

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=95.30  E-value=0.07  Score=38.94  Aligned_cols=65  Identities=6%  Similarity=0.091  Sum_probs=39.9

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHH----------HHhCCCCeEEEEccCCHhHHHHHHH------------------
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQI----------LRMHDVPYDSHDVLKDESIRNGIKE------------------   91 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~l----------L~~~gV~~~e~DI~~d~~~~~eL~~------------------   91 (205)
                      ...|+| |..     +||++|......          +...++.+-.++++.+++...++.+                  
T Consensus        27 gk~vll~F~a-----~~C~~C~~~~~~l~~~~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  101 (142)
T 3ewl_A           27 AQYTMLFFYD-----PDCSNCRKFEKLFAEIPAFVEMVENGTLRVLAIYPDENREEWATKAVYMPQGWIVGWNKAGDIRT  101 (142)
T ss_dssp             CSEEEEEECC-----SSCHHHHHHHHHHHTCHHHHHHHHHTSEEEEEEECSSCHHHHHHHHTTSCTTCEEEECTTCHHHH
T ss_pred             CCEEEEEEEC-----CCCccHHHHHHHHHHhHHHHHHhccCCeEEEEEEecCCHHHHHHHHHHcCCCcceeeCCccchhh
Confidence            344555 555     899999995333          3345677777887766543333221                  


Q ss_pred             --HhCCCCccEEee---CCeEeec
Q psy221           92 --YTSWPTIPQVFI---NGEFVGG  110 (205)
Q Consensus        92 --~~g~~tvPqvFI---~G~~IGG  110 (205)
                        ..+-..+|.+|+   +|+.+.+
T Consensus       102 ~~~~~v~~~P~~~lid~~G~i~~~  125 (142)
T 3ewl_A          102 RQLYDIRATPTIYLLDGRKRVILK  125 (142)
T ss_dssp             TTCSCCCSSSEEEEECTTCBEEEC
T ss_pred             HHHcCCCCCCeEEEECCCCCEEec
Confidence              345567898765   5777754

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=95.27  E-value=0.076  Score=39.23  Aligned_cols=62  Identities=10%  Similarity=0.039  Sum_probs=39.6

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhC---C-CCeEEEEccCCHhHHH-------------------HHHHHhCCCCc
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMH---D-VPYDSHDVLKDESIRN-------------------GIKEYTSWPTI   98 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~---g-V~~~e~DI~~d~~~~~-------------------eL~~~~g~~tv   98 (205)
                      ..|+.|..     +||++|.+....|+++   + +.+..++++.+++...                   ++.+..+...+
T Consensus        44 ~~ll~f~~-----~~C~~C~~~~~~l~~l~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  118 (156)
T 1kng_A           44 VSLVNVWA-----SWCVPCHDEAPLLTELGKDKRFQLVGINYKDAADNARRFLGRYGNPFGRVGVDANGRASIEWGVYGV  118 (156)
T ss_dssp             CEEEEEEC-----TTCHHHHHHHHHHHHHTTCTTSEEEEEEESCCHHHHHHHHHHHCCCCSEEEEETTSHHHHHTTCCSS
T ss_pred             EEEEEEEc-----ccCHhHHHHHHHHHHHHhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeeeCchhHHHHhcCcCcc
Confidence            34455666     9999999998888765   3 6777777665543222                   23333466789


Q ss_pred             c-EEee--CCeEe
Q psy221           99 P-QVFI--NGEFV  108 (205)
Q Consensus        99 P-qvFI--~G~~I  108 (205)
                      | .++|  +|+.+
T Consensus       119 P~~~~id~~G~i~  131 (156)
T 1kng_A          119 PETFVVGREGTIV  131 (156)
T ss_dssp             CEEEEECTTSBEE
T ss_pred             CeEEEEcCCCCEE
Confidence            9 5566  56543

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=95.27  E-value=0.1  Score=39.20  Aligned_cols=34  Identities=18%  Similarity=0.286  Sum_probs=22.6

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHh----C-CCCeEEEEcc
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRM----H-DVPYDSHDVL   80 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~----~-gV~~~e~DI~   80 (205)
                      ..++| |..     .||++|......|.+    + ++.+..++++
T Consensus        38 k~~lv~F~~-----~~C~~C~~~~~~l~~l~~~~~~v~vv~i~~d   77 (165)
T 3ha9_A           38 DVVILWFMA-----AWCPSCVYMADLLDRLTEKYREISVIAIDFW   77 (165)
T ss_dssp             SEEEEEEEC-----TTCTTHHHHHHHHHHHHHHCTTEEEEEEECC
T ss_pred             CEEEEEEEC-----CCCcchhhhHHHHHHHHHHcCCcEEEEEEec
Confidence            34444 665     899999988777754    3 4556666665

>1pmt_A PMGST, GST B1-1, glutathione transferase; glutathione-conjugating, A putative oxidoreduct; HET: GSH; 2.50A {Proteus mirabilis} SCOP: a.45.1.1 c.47.1.5 PDB: 2pmt_A*

Probab=95.24  E-value=0.017  Score=45.27  Aligned_cols=69  Identities=10%  Similarity=0.122  Sum_probs=50.3

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHh---HHHHHHHHhCCCCccEEe-eCCeEeechhHHHHHHh
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES---IRNGIKEYTSWPTIPQVF-INGEFVGGCDILLKLHQ  119 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~---~~~eL~~~~g~~tvPqvF-I~G~~IGG~del~~l~e  119 (205)
                      .||..     +.++ |.+++-+|+..|++|+.+.|+....   ...++.+++...++|.+. .||..|.....|.+..+
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~   74 (203)
T 1pmt_A            2 KLYYT-----PGSC-SLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYLA   74 (203)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHHH
T ss_pred             eeecc-----CCcc-hHHHHHHHHHcCCCceEEEeccccccccCCHHHHhcCCCCCCCeEEecCCcEEeeHHHHHHHHH
Confidence            57776     7775 9999999999999999888764321   123455566667899998 57778887777666544

>2djj_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp1_A

Probab=95.23  E-value=0.018  Score=41.12  Aligned_cols=48  Identities=17%  Similarity=0.367  Sum_probs=35.1

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC-----------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH-----------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      ++.|..     +||++|++....|++.           ++.+..+|++.++     +.+  +-..+|.+++
T Consensus        29 lv~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~~~--~v~~~Pt~~~   87 (121)
T 2djj_A           29 LIEFYA-----PWCGHCKALAPKYEELGALYAKSEFKDRVVIAKVDATAND-----VPD--EIQGFPTIKL   87 (121)
T ss_dssp             EEEEEC-----SSCTTHHHHHHHHHHHHHHHTTSSCTTSSEEEEEETTTSC-----CSS--CCSSSSEEEE
T ss_pred             EEEEEC-----CCCHhHHHhhHHHHHHHHHHhhcccCCceEEEEEECcccc-----ccc--ccCcCCeEEE
Confidence            455666     9999999998888642           4678888887665     222  6678999866

>2dsa_A Glutathione S-transferase; HET: GSH HPX; 2.10A {Burkholderia xenovorans} PDB: 2gdr_A*

Probab=95.09  E-value=0.015  Score=45.63  Aligned_cols=68  Identities=12%  Similarity=0.115  Sum_probs=49.3

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH---hHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE---SIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLH  118 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~---~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~  118 (205)
                      .||..     +.++ |.+++-+|+..||+|+.+.++...   ....++.+++...++|.+.+ ||..|.....|.+..
T Consensus         2 ~Ly~~-----~~s~-~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL   73 (203)
T 2dsa_A            2 KLYYS-----PGAC-SLSPHIALREAGLNFELVQVDLASKKTASGQDYLEVNPAGYVPCLQLDDGRTLTEGPAIVQYV   73 (203)
T ss_dssp             EEEEC-----TTST-THHHHHHHHHHTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             eeeec-----CCcc-hHHHHHHHHHcCCCCeEEEEeCCCCcccCCHHHHHhCCCCCCCEEEecCCcEEecHHHHHHHH
Confidence            57776     6775 899999999999999988876431   11234455555678999987 677787777666643

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=95.08  E-value=0.084  Score=38.92  Aligned_cols=81  Identities=17%  Similarity=0.178  Sum_probs=43.5

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCH--hHH-----------------HHHHHHhCCCC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDE--SIR-----------------NGIKEYTSWPT   97 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~--~~~-----------------~eL~~~~g~~t   97 (205)
                      |+.|..     +||++|.+....|.++       ++.+..++++.++  ..+                 ..+.+..+-..
T Consensus        32 lv~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~  106 (153)
T 2l5o_A           32 LINFWF-----PSCPGCVSEMPKIIKTANDYKNKNFQVLAVAQPIDPIESVRQYVKDYGLPFTVMYDADKAVGQAFGTQV  106 (153)
T ss_dssp             EEEEEC-----TTCTTHHHHHHHHHHHHHHGGGTTEEEEEEECTTSCHHHHHHHHHHTTCCSEEEECSSCHHHHHHTCCS
T ss_pred             EEEEEC-----CCCccHHHHHHHHHHHHHHhccCCeEEEEEecCCCCHHHHHHHHHHcCCCceEEcCchHHHHHHcCCCc
Confidence            444555     8999999877666432       3555555443221  111                 13344456678


Q ss_pred             ccEEee---CCeEe---echhHHHHHHhcccHHHHHhhcC
Q psy221           98 IPQVFI---NGEFV---GGCDILLKLHQSGELVEQLEKGD  131 (205)
Q Consensus        98 vPqvFI---~G~~I---GG~del~~l~e~GeL~~~L~~~~  131 (205)
                      +|.+++   +|+.+   .|..+..++.  ..|.++|+...
T Consensus       107 ~P~~~lid~~G~i~~~~~g~~~~~~l~--~~l~~ll~~~~  144 (153)
T 2l5o_A          107 YPTSVLIGKKGEILKTYVGEPDFGKLY--QEIDTAWRNSD  144 (153)
T ss_dssp             SSEEEEECSSSCCCEEEESSCCHHHHH--HHHHHHHHCCS
T ss_pred             cCeEEEECCCCcEEEEEcCCCCHHHHH--HHHHHHHHhhh
Confidence            999876   67542   3333333332  23566666543

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=94.93  E-value=0.08  Score=38.73  Aligned_cols=63  Identities=16%  Similarity=0.235  Sum_probs=39.1

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHh--------------------HHHHHHHH
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDES--------------------IRNGIKEY   92 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~--------------------~~~eL~~~   92 (205)
                      ..|+| |..     +||++|......|.++        ++.+..++++.+++                    ...++.+.
T Consensus        29 k~vll~F~a-----~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (144)
T 1o73_A           29 KTVFLYFSA-----SWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKT  103 (144)
T ss_dssp             CEEEEEEEC-----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred             CEEEEEEEC-----cCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCceEeeccchhHHHHHHHH
Confidence            34444 555     8999999888777542        45566666665431                    12345555


Q ss_pred             hCCCCccEEee----CCeEee
Q psy221           93 TSWPTIPQVFI----NGEFVG  109 (205)
Q Consensus        93 ~g~~tvPqvFI----~G~~IG  109 (205)
                      .+-..+|.+++    +|+.+.
T Consensus       104 ~~v~~~Pt~~lid~~~G~i~~  124 (144)
T 1o73_A          104 FGVESIPTLITINADTGAIIG  124 (144)
T ss_dssp             HTCCSSSEEEEEETTTCCEEE
T ss_pred             cCCCCCCEEEEEECCCCeEEe
Confidence            57778888755    366553

>3hd5_A Thiol:disulfide interchange protein DSBA; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.35A {Bordetella parapertussis}

Probab=94.92  E-value=0.11  Score=40.57  Aligned_cols=33  Identities=18%  Similarity=0.299  Sum_probs=24.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEcc
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVL   80 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~   80 (205)
                      .|+.|..     .+||+|.+....|.++      +|.|..+++.
T Consensus        28 ~vv~f~d-----~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~~~~   66 (195)
T 3hd5_A           28 EVLEFFA-----YTCPHCAAIEPMVEDWAKTAPQDVVLKQVPIA   66 (195)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHTCCTTEEEEEEECC
T ss_pred             EEEEEEC-----CCCccHHHhhHHHHHHHHHCCCCeEEEEEecc
Confidence            5677888     9999999988777543      3566677775

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=94.85  E-value=0.11  Score=38.61  Aligned_cols=41  Identities=10%  Similarity=0.091  Sum_probs=26.8

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHH
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRN   87 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~   87 (205)
                      ..++| |..     +|||+|......|.++       ++.+..++++.+++...
T Consensus        35 k~vlv~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~v~~v~v~~d~~~~~~~   83 (165)
T 3or5_A           35 KAYIVNFFA-----TWCPPCRSEIPDMVQVQKTWASRGFTFVGIAVNEQLPNVK   83 (165)
T ss_dssp             CEEEEEEEC-----TTSHHHHHHHHHHHHHHHHHTTTTEEEEEEECSCCHHHHH
T ss_pred             CEEEEEEEc-----CcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHH
Confidence            44544 555     9999999988777543       35666777766554433

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=94.83  E-value=0.035  Score=42.85  Aligned_cols=71  Identities=17%  Similarity=0.213  Sum_probs=45.3

Q ss_pred             HHHHHHHHHhc-CCcEEE-EEeeCCCCCCChHHHHHHHHHHh------CCCCeEEEEccCCHhHHHHHHHHhCC--CCcc
Q psy221           30 DVQKSIDEMVK-KSKVVV-FMKGVPEAPRCGFSNAVVQILRM------HDVPYDSHDVLKDESIRNGIKEYTSW--PTIP   99 (205)
Q Consensus        30 ~~~~~l~~~~~-~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~------~gV~~~e~DI~~d~~~~~eL~~~~g~--~tvP   99 (205)
                      ++++.+..... ..+|+| |..     +||++|+.....|.+      .++.|..+|++.+++.   +....+.  ..+|
T Consensus        34 ~~~~~~~~~~~~~k~vlv~F~a-----~WC~~C~~~~p~l~~~~~~~~~~~~~~~v~~d~~~~~---~~~~~~~~~~~~P  105 (164)
T 1sen_A           34 TLEDGKKEAAASGLPLMVIIHK-----SWCGACKALKPKFAESTEISELSHNFVMVNLEDEEEP---KDEDFSPDGGYIP  105 (164)
T ss_dssp             CHHHHHHHHHHHTCCEEEEEEC-----TTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGGGSC---SCGGGCTTCSCSS
T ss_pred             CHHHHHHHHHhcCCeEEEEEEC-----CCCHHHHHHHHHHHHHHHHhhcCCeEEEEEecCCchH---HHHHhcccCCcCC
Confidence            34455555543 445555 555     999999999999875      3578889998776541   2222333  5689


Q ss_pred             EEe-e--CCeEe
Q psy221          100 QVF-I--NGEFV  108 (205)
Q Consensus       100 qvF-I--~G~~I  108 (205)
                      .++ +  +|+.+
T Consensus       106 t~~~~d~~G~~~  117 (164)
T 1sen_A          106 RILFLDPSGKVH  117 (164)
T ss_dssp             EEEEECTTSCBC
T ss_pred             eEEEECCCCCEE
Confidence            874 4  57644

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=94.82  E-value=0.055  Score=39.94  Aligned_cols=55  Identities=18%  Similarity=0.320  Sum_probs=34.6

Q ss_pred             CCChHHHHHHHHHHh----C---CCCeEEEEccCCHh-HHH------------------HHHHHhCCCCccEEee---CC
Q psy221           55 PRCGFSNAVVQILRM----H---DVPYDSHDVLKDES-IRN------------------GIKEYTSWPTIPQVFI---NG  105 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~----~---gV~~~e~DI~~d~~-~~~------------------eL~~~~g~~tvPqvFI---~G  105 (205)
                      +||++|......|.+    +   ++.+..++++.+.+ .++                  ++.+..+-..+|.++|   +|
T Consensus        40 ~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P~~~lid~~G  119 (152)
T 2lja_A           40 TWCGPCRGELPALKELEEKYAGKDIHFVSLSCDKNKKAWENMVTKDQLKGIQLHMGTDRTFMDAYLINGIPRFILLDRDG  119 (152)
T ss_dssp             SSCCGGGGTHHHHHHHHHHSTTSSEEEEEEECCSCHHHHHHHHHHHTCCSEEEECSSCTHHHHHTTCCSSCCEEEECTTS
T ss_pred             CcCHhHHHHhHHHHHHHHHhccCCeEEEEEEccCcHHHHHHHHHhcCCCCceeecCcchhHHHHcCcCCCCEEEEECCCC
Confidence            899999876665533    3   35566666665542 221                  3444556778898876   67


Q ss_pred             eEee
Q psy221          106 EFVG  109 (205)
Q Consensus       106 ~~IG  109 (205)
                      +.+.
T Consensus       120 ~i~~  123 (152)
T 2lja_A          120 KIIS  123 (152)
T ss_dssp             CEEE
T ss_pred             eEEE
Confidence            7655

>3h1n_A Probable glutathione S-transferase; APC84167, bordetella bronchisepti structural genomics, PSI-2, protein structure initiative; 1.83A {Bordetella bronchiseptica RB50}

Probab=94.79  E-value=0.042  Score=45.02  Aligned_cols=72  Identities=13%  Similarity=0.172  Sum_probs=54.4

Q ss_pred             CcEEEEEeeCCCCC-CChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHH---HHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           42 SKVVVFMKGVPEAP-RCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIK---EYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        42 ~~VvlYsk~~~~~~-~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~---~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      ..+.||..     + ..+.|.+++-+|+..||+|+.+.|+.+.....++.   ...-. .||.+..||..|.....|.+.
T Consensus        20 m~~~L~y~-----~g~~~~a~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~k~~nP~-kVPvL~d~g~~l~ES~AI~~Y   93 (252)
T 3h1n_A           20 MAYDLWYW-----DGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLDDMRRRRDTPPF-APPYLVADGMTIAQTANILLF   93 (252)
T ss_dssp             GCEEEECC-----SSSCTTHHHHHHHHHHHTCCEEEGGGSTTCCHHHHHTSCCSSCCS-SSCEEEETTEEEESHHHHHHH
T ss_pred             CceEEEeC-----CCCCcchHHHHHHHHhCCCCceEEeecCchhhHHHHhhccCCCCC-CCCEEEECCEEeecHHHHHHH
Confidence            45888877     7 48999999999999999999999884332233443   34446 899999999988877766665


Q ss_pred             Hh
Q psy221          118 HQ  119 (205)
Q Consensus       118 ~e  119 (205)
                      ..
T Consensus        94 L~   95 (252)
T 3h1n_A           94 LG   95 (252)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=94.76  E-value=0.094  Score=38.52  Aligned_cols=64  Identities=14%  Similarity=0.048  Sum_probs=39.1

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHh--------------------HHHHHHH
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDES--------------------IRNGIKE   91 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~--------------------~~~eL~~   91 (205)
                      ...|+| |..     +||+.|......|.++        ++.+..++++.+++                    ....+.+
T Consensus        28 gk~vll~F~a-----~wC~~C~~~~~~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  102 (144)
T 1i5g_A           28 GKTVFFYFSA-----SWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTT  102 (144)
T ss_dssp             TSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCSSHHHHHHHHTTCSSEECCTTCHHHHHHHHH
T ss_pred             CCEEEEEEEC-----CCCHHHHHHHHHHHHHHHHhccCCCEEEEEEeCCCCHHHHHHHHHhCCccccccCchHHHHHHHH
Confidence            344555 555     8999999887776442        45566666665432                    1244555


Q ss_pred             HhCCCCccEEee----CCeEee
Q psy221           92 YTSWPTIPQVFI----NGEFVG  109 (205)
Q Consensus        92 ~~g~~tvPqvFI----~G~~IG  109 (205)
                      ..+-..+|.+++    +|+.+.
T Consensus       103 ~~~v~~~P~~~lid~~~G~i~~  124 (144)
T 1i5g_A          103 GFDVKSIPTLVGVEADSGNIIT  124 (144)
T ss_dssp             HTTCCSSSEEEEEETTTCCEEE
T ss_pred             HcCCCCCCEEEEEECCCCcEEe
Confidence            567778888754    365553

>4gf0_A Glutathione S-transferase; GST, enzyme function initiative, EFI, structural genomics; HET: GSH; 1.75A {Sulfitobacter}

Probab=94.68  E-value=0.15  Score=40.19  Aligned_cols=68  Identities=16%  Similarity=0.249  Sum_probs=50.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKL  117 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l  117 (205)
                      +.||..     ++ +.+.+|+-+|++.||+|+.+.|+.  .+....++.+++-..++|.+.++ |..|.....|.+.
T Consensus         4 ~kLY~~-----p~-s~s~~vr~~L~e~gl~ye~~~v~~~~~~~~~~~~l~~nP~g~vP~L~~d~g~~l~ES~aI~~Y   74 (215)
T 4gf0_A            4 LTLYFT-----PG-TISVAVAIAIEEAALPYQPVRVDFATAEQTKPDYLAINPKGRVPALRLEDDTILTETGALLDY   74 (215)
T ss_dssp             EEEEEC-----TT-STHHHHHHHHHHTTCCEEEEECCGGGTGGGSHHHHTTCTTCCSCEEECTTSCEEECHHHHHHH
T ss_pred             EEEEeC-----CC-CcHHHHHHHHHHhCCCCEEEEECCCCCccCCHHHHHhCCCCCcceEEecCCcEEechHHHHHH
Confidence            578866     43 457899999999999999888764  33444567777666789999987 6677766655554

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=94.64  E-value=0.071  Score=38.84  Aligned_cols=71  Identities=13%  Similarity=0.222  Sum_probs=42.6

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHh-HHHH--------------------HHHH
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDES-IRNG--------------------IKEY   92 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~-~~~e--------------------L~~~   92 (205)
                      ..|+| |..     +||++|......|.++       ++.+-.++++.+++ .++.                    +...
T Consensus        32 k~vll~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  106 (148)
T 3hcz_A           32 KYTILFFWD-----SQCGHCQQETPKLYDWWLKNRAKGIQVYAANIERKDEEWLKFIRSKKIGGWLNVRDSKNHTDFKIT  106 (148)
T ss_dssp             SEEEEEEEC-----GGGCTTCSHHHHHHHHHHHHGGGTEEEEEEECCSSSHHHHHHHHHHTCTTSEEEECTTCCCCHHHH
T ss_pred             CEEEEEEEC-----CCCccHHHHHHHHHHHHHHhccCCEEEEEEEecCCHHHHHHHHHHcCCCCceEEeccccchhHHHh
Confidence            34544 555     8999998777666443       46677777775543 3332                    3344


Q ss_pred             hCCCCccEEee---CCeEee---chhHHHHH
Q psy221           93 TSWPTIPQVFI---NGEFVG---GCDILLKL  117 (205)
Q Consensus        93 ~g~~tvPqvFI---~G~~IG---G~del~~l  117 (205)
                      .+...+|.+++   +|+.+.   |.+++.++
T Consensus       107 ~~i~~~P~~~lid~~G~i~~~~~g~~~~~~~  137 (148)
T 3hcz_A          107 YDIYATPVLYVLDKNKVIIAKRIGYENLDDF  137 (148)
T ss_dssp             HCCCSSCEEEEECTTCBEEEESCCGGGHHHH
T ss_pred             cCcCCCCEEEEECCCCcEEEecCCHHHHHHH
Confidence            56678999876   676543   34444443

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=94.63  E-value=0.14  Score=40.70  Aligned_cols=71  Identities=10%  Similarity=0.084  Sum_probs=43.7

Q ss_pred             HHHHHHHhc-CCcEEE-EEeeCCCCCCChHHHHHHH----------HHHhCCCCeEEEEccCCHhHHHHHH----HHhCC
Q psy221           32 QKSIDEMVK-KSKVVV-FMKGVPEAPRCGFSNAVVQ----------ILRMHDVPYDSHDVLKDESIRNGIK----EYTSW   95 (205)
Q Consensus        32 ~~~l~~~~~-~~~Vvl-Ysk~~~~~~~Cp~C~~ak~----------lL~~~gV~~~e~DI~~d~~~~~eL~----~~~g~   95 (205)
                      ++.+..... ..+|+| |..     +||++|+.+..          .|+. ++-+..+|+++.+++.+.+.    .+.|.
T Consensus        29 ~ea~~~A~~~~KpVlvdF~A-----~WC~~Ck~m~~~~f~~~~va~~l~~-~fv~ikVD~de~~~l~~~y~~~~q~~~gv  102 (173)
T 3ira_A           29 EEAFEKARKENKPVFLSIGY-----STCHWCHMMAHESFEDEEVAGLMNE-AFVSIKVDREERPDIDNIYMTVCQIILGR  102 (173)
T ss_dssp             HHHHHHHHHHTCCEEEEEEC-----TTCHHHHHHHHHTTTCHHHHHHHHH-HCEEEEEETTTCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhCCCEEEeccc-----chhHhhccccccccCCHHHHHHHHh-cCceeeeCCcccCcHHHHHHHHHHHHcCC
Confidence            344555544 455655 555     99999998654          2222 35556778887776544442    33478


Q ss_pred             CCccEEe-e--CCeEe
Q psy221           96 PTIPQVF-I--NGEFV  108 (205)
Q Consensus        96 ~tvPqvF-I--~G~~I  108 (205)
                      ..+|.++ +  +|+.+
T Consensus       103 ~g~Pt~v~l~~dG~~v  118 (173)
T 3ira_A          103 GGWPLNIIMTPGKKPF  118 (173)
T ss_dssp             CCSSEEEEECTTSCEE
T ss_pred             CCCcceeeECCCCCce
Confidence            8899874 4  57765

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=94.56  E-value=0.077  Score=39.18  Aligned_cols=63  Identities=14%  Similarity=0.132  Sum_probs=38.4

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHh--------------------HHHHHHHH
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDES--------------------IRNGIKEY   92 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~--------------------~~~eL~~~   92 (205)
                      ..|+| |..     +||+.|......|.++        ++.+..++++.+++                    ....+.+.
T Consensus        29 k~vll~F~a-----~wC~~C~~~~p~l~~l~~~~~~~~~~~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  103 (146)
T 1o8x_A           29 KLVFFYFSA-----SWCPPARGFTPQLIEFYDKFHESKNFEVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKH  103 (146)
T ss_dssp             CEEEEEEEC-----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCGGGHHHHHHHHHH
T ss_pred             CEEEEEEEc-----cCCHHHHHHHHHHHHHHHHhhhcCCeEEEEEeCCCCHHHHHHHHHHCCceeeccchhhHHHHHHHH
Confidence            44544 555     8999999877766432        45566677765432                    12345555


Q ss_pred             hCCCCccEEee----CCeEee
Q psy221           93 TSWPTIPQVFI----NGEFVG  109 (205)
Q Consensus        93 ~g~~tvPqvFI----~G~~IG  109 (205)
                      .+-..+|.+++    +|+.+.
T Consensus       104 ~~v~~~Pt~~lid~~~G~i~~  124 (146)
T 1o8x_A          104 FNVESIPTLIGVDADSGDVVT  124 (146)
T ss_dssp             TTCCSSSEEEEEETTTCCEEE
T ss_pred             hCCCCCCEEEEEECCCCeEEE
Confidence            56677887754    355543

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.50  E-value=0.017  Score=42.08  Aligned_cols=53  Identities=17%  Similarity=0.391  Sum_probs=35.9

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      ..|+| |..     +||++|++....|++.        .+.+..+|++.++.+    .+..+-..+|.+++
T Consensus        26 ~~vlv~f~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~vd~~~~~~~----~~~~~v~~~Pt~~~   87 (133)
T 2dj3_A           26 KDVLIEFYA-----PWCGHCKQLEPIYTSLGKKYKGQKDLVIAKMDATANDIT----NDQYKVEGFPTIYF   87 (133)
T ss_dssp             SEEEEEECC-----TTCSHHHHHHHHHHHHHHHHTTSSSEEEEEECTTTSCCC----CSSCCCSSSSEEEE
T ss_pred             CcEEEEEEC-----CCChhHHHHHHHHHHHHHHhcCCCCEEEEEecCCcCHHH----HhhcCCCcCCEEEE
Confidence            34444 555     9999999999888652        356667777665432    23346678999866

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=94.49  E-value=0.096  Score=40.35  Aligned_cols=60  Identities=13%  Similarity=0.148  Sum_probs=42.6

Q ss_pred             cEEEEEeeCCCCCCC--hHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeec
Q psy221           43 KVVVFMKGVPEAPRC--GFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGG  110 (205)
Q Consensus        43 ~VvlYsk~~~~~~~C--p~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG  110 (205)
                      +|+|+...    +||  +.|+.+.-+|+++      ++.+-.+|+++++    +|...+|-..+|.+  |-||+.++-
T Consensus        35 ~vlVdF~A----~wCr~gpCk~iaPvleela~e~~~~v~~~KVdvDe~~----~la~~ygV~siPTlilFkdG~~v~~  104 (137)
T 2qsi_A           35 IVVLFFRG----DAVRFPEAADLAVVLPELINAFPGRLVAAEVAAEAER----GLMARFGVAVCPSLAVVQPERTLGV  104 (137)
T ss_dssp             EEEEEECC----CTTTCTTHHHHHHHHHHHHHTSTTTEEEEEECGGGHH----HHHHHHTCCSSSEEEEEECCEEEEE
T ss_pred             cEEEEEeC----CccCCCchhhHHhHHHHHHHHccCCcEEEEEECCCCH----HHHHHcCCccCCEEEEEECCEEEEE
Confidence            56665442    799  9999999888653      3456667765544    56667788899988  559987653

>1f2e_A Glutathione S-transferase; GST complexed with glutathione, thioredoxin superfamily fold transferase; HET: GSH; 2.30A {Sphingomonas paucimobilis} SCOP: a.45.1.1 c.47.1.5

Probab=94.33  E-value=0.038  Score=43.14  Aligned_cols=68  Identities=16%  Similarity=0.162  Sum_probs=48.5

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCH-hH--HHHHHHHhCCCCccEEee-CCeEeechhHHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDE-SI--RNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLH  118 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~-~~--~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~  118 (205)
                      .||..     + .++|.+++-+|+..||+|+.+.++... +.  ..++.+.....++|.+.+ ||..|.....|.+..
T Consensus         2 ~Ly~~-----~-~~~~~~v~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~~P~g~vP~L~~~~g~~l~eS~aI~~yL   73 (201)
T 1f2e_A            2 KLFIS-----P-GACSLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYI   73 (201)
T ss_dssp             EEEEC-----T-TSTTHHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             eeeec-----C-CccHHHHHHHHHHcCCCceEEEeecCCCCCCCChHHHccCcCCCCceEEecCCcEeeHHHHHHHHH
Confidence            56765     4 467999999999999999988776432 11  134555666779999984 777787776666543

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=94.26  E-value=0.33  Score=35.66  Aligned_cols=61  Identities=11%  Similarity=0.153  Sum_probs=36.2

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCC-HhH-H-----------------HHHHHHhC
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKD-ESI-R-----------------NGIKEYTS   94 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d-~~~-~-----------------~eL~~~~g   94 (205)
                      ..++| |..     +||+.|......|.++       ++.+..++++.+ ++. +                 ..+.+..+
T Consensus        29 k~vll~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  103 (154)
T 3kcm_A           29 QVVIVNFWA-----TWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYG  103 (154)
T ss_dssp             SEEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTSSEEEEEEECCTTHHHHHHHHHHHHCCCCCEEECTTCHHHHHHT
T ss_pred             CEEEEEEEC-----CCCHHHHHHHHHHHHHHHHhccCCeEEEEEEcCCcchHHHHHHHHHcCCCeeEEecCchHHHHHhC
Confidence            44544 555     9999999877766442       445566666654 221 1                 12444557


Q ss_pred             CCCcc-EEee--CCeE
Q psy221           95 WPTIP-QVFI--NGEF  107 (205)
Q Consensus        95 ~~tvP-qvFI--~G~~  107 (205)
                      -..+| .++|  +|+.
T Consensus       104 v~~~P~~~lid~~G~i  119 (154)
T 3kcm_A          104 TTGVPETFVIDRHGVI  119 (154)
T ss_dssp             CCSBCEEEEECTTSBE
T ss_pred             CCCCCeEEEECCCCcE
Confidence            77899 4555  4654

>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}

Probab=94.24  E-value=0.18  Score=39.14  Aligned_cols=32  Identities=16%  Similarity=0.179  Sum_probs=22.6

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHh----CC--CCeEEEEc
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRM----HD--VPYDSHDV   79 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~g--V~~~e~DI   79 (205)
                      .|++|..     .+||+|......|..    ++  |.|..+.+
T Consensus        28 ~i~~f~d-----~~Cp~C~~~~~~l~~l~~~~~~~v~~~~~p~   65 (193)
T 2rem_A           28 EVVEIFG-----YTCPHCAHFDSKLQAWGARQAKDVRFTLVPA   65 (193)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHTSCTTEEEEEEEC
T ss_pred             EEEEEEC-----CCChhHhhhhHHHHHHHHhcCCceEEEEeCc
Confidence            5788888     999999988776643    43  45555555

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=94.12  E-value=0.22  Score=36.75  Aligned_cols=62  Identities=18%  Similarity=0.206  Sum_probs=39.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC----CCCeEEEEcc--CCHh---------------------HHHHHHHHhCC
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH----DVPYDSHDVL--KDES---------------------IRNGIKEYTSW   95 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~----gV~~~e~DI~--~d~~---------------------~~~eL~~~~g~   95 (205)
                      -|+.|..     +||+.|......|.++    ++.+..++++  .+++                     ....+.+..+.
T Consensus        33 vll~f~~-----~~C~~C~~~~~~l~~l~~~~~v~~v~v~~d~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~v  107 (154)
T 3ia1_A           33 AVIVFWA-----SWCTVCKAEFPGLHRVAEETGVPFYVISREPRDTREVVLEYMKTYPRFIPLLASDRDRPHEVAARFKV  107 (154)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHHHCCCEEEEECCTTCCHHHHHHHHTTCTTEEECBCCSSCCHHHHHTTSSB
T ss_pred             EEEEEEc-----ccChhHHHHHHHHHHHHHHcCCeEEEEeCCCcccHHHHHHHHHHcCCCcccccccccchHHHHHHhCC
Confidence            3444555     8999999987777543    7888888883  2221                     22344455567


Q ss_pred             CCccEE-ee--CCeEee
Q psy221           96 PTIPQV-FI--NGEFVG  109 (205)
Q Consensus        96 ~tvPqv-FI--~G~~IG  109 (205)
                      ..+|.+ +|  +|+.+.
T Consensus       108 ~~~P~~~lid~~G~i~~  124 (154)
T 3ia1_A          108 LGQPWTFVVDREGKVVA  124 (154)
T ss_dssp             CSSCEEEEECTTSEEEE
T ss_pred             CcccEEEEECCCCCEEE
Confidence            789995 55  575443

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=93.95  E-value=0.029  Score=41.10  Aligned_cols=58  Identities=19%  Similarity=0.349  Sum_probs=41.5

Q ss_pred             CcEEE-EEeeCCCCCCCh--------------HHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221           42 SKVVV-FMKGVPEAPRCG--------------FSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQ  100 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp--------------~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPq  100 (205)
                      .+|+| |..     +||+              +|+.+...|++.      ++.+..+|++.+++    +.+..+-..+|.
T Consensus        22 k~vlv~F~a-----~wC~~c~~l~~~~~~~~~~C~~~~p~~~~l~~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~Pt   92 (123)
T 1oaz_A           22 GAILVDFWA-----EWCGPIEESDDRRYDLVGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPT   92 (123)
T ss_dssp             SEEEEEEEC-----SSCSCBSSSTTSCCSCCCCCCTTHHHHTTC-------CEEEEEETTSCTT----TGGGGTCCBSSE
T ss_pred             CeEEEEEEC-----CCCccccccccccccCCCCcHHHHHHHHHHHHHhcCCeEEEEEECCCCHH----HHHHcCCCccCE
Confidence            34444 555     9999              999999988654      35677888877764    444567788999


Q ss_pred             Eee--CCeEe
Q psy221          101 VFI--NGEFV  108 (205)
Q Consensus       101 vFI--~G~~I  108 (205)
                      +++  +|+.+
T Consensus        93 ~~~~~~G~~~  102 (123)
T 1oaz_A           93 LLLFKNGEVA  102 (123)
T ss_dssp             EEEEESSSEE
T ss_pred             EEEEECCEEE
Confidence            977  88753

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=93.89  E-value=0.58  Score=35.70  Aligned_cols=44  Identities=11%  Similarity=0.085  Sum_probs=27.2

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHH-------hCCC------CeEEEEccC-CHhHHHHH
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILR-------MHDV------PYDSHDVLK-DESIRNGI   89 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~-------~~gV------~~~e~DI~~-d~~~~~eL   89 (205)
                      ...|+| |..     +||++|......|.       ..++      .+..++++. +++..+.+
T Consensus        59 gk~vlv~F~a-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~~~v~~v~v~~d~~~~~~~~~~  117 (183)
T 3lwa_A           59 NQVVILNAWG-----QWCAPCRSESDDLQIIHEELQAAGNGDTPGGTVLGINVRDYSRDIAQDF  117 (183)
T ss_dssp             TSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHHHHCC---CCSEEEEEEECSCCCHHHHHHH
T ss_pred             CCEEEEEEEC-----CcCHhHHHHHHHHHHHHHHHHhcCCCccCCcEEEEEECCCCCHHHHHHH
Confidence            344555 555     99999997766553       3457      777778776 44443443

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=93.85  E-value=0.092  Score=41.87  Aligned_cols=57  Identities=18%  Similarity=0.314  Sum_probs=39.5

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      +|.|..     +||++|+.....|.+    +     .+.+..+|++.+++    +.+..+-..+|.+++  +|+.+.
T Consensus       151 ~v~f~a-----~wC~~C~~~~p~~~~~a~~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pt~~~~~~g~~~~  218 (241)
T 3idv_A          151 LVEFYA-----PWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETD----LAKRFDVSGYPTLKIFRKGRPYD  218 (241)
T ss_dssp             EEEEEC-----TTCTGGGGTHHHHHHHHHHHHTSSSCCCEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             EEEEEC-----CCCHHHHHhHHHHHHHHHHHhccCCcEEEEEEECCCCHH----HHHHcCCcccCEEEEEECCeEEE
Confidence            444666     999999876555432    1     28888999887764    455557778998855  787653

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=93.77  E-value=0.064  Score=40.10  Aligned_cols=61  Identities=11%  Similarity=0.187  Sum_probs=39.7

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHH-hCC-------CCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILR-MHD-------VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~-~~g-------V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      ..+|.|..     +||++|+.+...+. .+.       +++..+||+.+..  +.+....+-..+|.+.+  +|+.|+
T Consensus        20 ~~LV~F~A-----~wC~~Ck~~~~~i~~~~~~~a~~~~~~l~~vdv~~~~~--~~la~~~~V~g~PT~i~f~~G~ev~   90 (116)
T 3dml_A           20 LRLLMFEQ-----PGCLYCARWDAEIAPQYPLTDEGRAAPVQRLQMRDPLP--PGLELARPVTFTPTFVLMAGDVESG   90 (116)
T ss_dssp             EEEEEEEC-----TTCHHHHHHHHHTTTTGGGSHHHHHSCEEEEETTSCCC--TTCBCSSCCCSSSEEEEEETTEEEE
T ss_pred             CEEEEEEC-----CCCHHHHHHHHHHHhhHHHhhhcccceEEEEECCCCCc--hhHHHHCCCCCCCEEEEEECCEEEe
Confidence            44566777     99999999877663 332       5788889987632  12222334557788744  887665

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=93.77  E-value=0.088  Score=38.32  Aligned_cols=66  Identities=11%  Similarity=0.108  Sum_probs=40.4

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHh----C----CCCeEEEEccCCHh-HH--------------------HHHHH
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRM----H----DVPYDSHDVLKDES-IR--------------------NGIKE   91 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~----~----gV~~~e~DI~~d~~-~~--------------------~eL~~   91 (205)
                      ..|+| |..     +||++|......|.+    +    ++.+..++++.+++ .+                    ..+..
T Consensus        34 k~vll~F~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  108 (148)
T 3fkf_A           34 RYLLLNFWA-----SWCDPQPEANAELKRLNKEYKKNKNFAMLGISLDIDREAWETAIKKDTLSWDQVCDFTGLSSETAK  108 (148)
T ss_dssp             SEEEEEEEC-----GGGCCCHHHHHHHHHHHHHTTTCTTEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHHHH
T ss_pred             cEEEEEEEC-----CCCHHHHHHhHHHHHHHHHhcCCCCeEEEEEECCCCHHHHHHHHHHcCCCceEEEccCCcchHHHH
Confidence            34444 555     899999988777643    3    34455556555442 21                    24445


Q ss_pred             HhCCCCccEEee---CCeEeechh
Q psy221           92 YTSWPTIPQVFI---NGEFVGGCD  112 (205)
Q Consensus        92 ~~g~~tvPqvFI---~G~~IGG~d  112 (205)
                      ..|-..+|.+++   +|+.++...
T Consensus       109 ~~~v~~~P~~~lid~~G~i~~~~~  132 (148)
T 3fkf_A          109 QYAILTLPTNILLSPTGKILARDI  132 (148)
T ss_dssp             HTTCCSSSEEEEECTTSBEEEESC
T ss_pred             hcCCCCcCEEEEECCCCeEEEecC
Confidence            567788999765   677766543

>1b8x_A Protein (AML-1B); nuclear matrix targeting signal protein, signal protein; 2.70A {Escherichia coli} SCOP: a.45.1.1 c.47.1.5

Probab=93.70  E-value=0.029  Score=47.38  Aligned_cols=68  Identities=12%  Similarity=0.150  Sum_probs=46.8

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC---HhHHHHHHHHh-CCCCccEEeeCCeEeechhHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD---ESIRNGIKEYT-SWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d---~~~~~eL~~~~-g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      ..||.-     +.+++|.+++-+|+..||+|+.+.|+..   +....+. .+. -..++|.+..||..|.....|.+.
T Consensus         2 ~~Lyy~-----~~s~~~~~vr~~L~e~gi~ye~~~v~~~~~~~~~~~~~-~ln~P~gkVPvL~d~g~~l~ES~aI~~Y   73 (280)
T 1b8x_A            2 PILGYW-----KIKGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKF-ELGLEFPNLPYYIDGDVKLTQSMAIIRY   73 (280)
T ss_dssp             CCCEEE-----SSSTTTHHHHHHHHHTTCCCCCEEECSSTTTTTTSSTT-TTCCSSCCSSBEECSSCEECSHHHHHHH
T ss_pred             cEEEEe-----CCCchHHHHHHHHHHcCCCcEEEEeCCCChhhhhhhhh-ccCCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            345666     7899999999999999999998888642   1221111 222 245799998777777776655554

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=93.38  E-value=0.21  Score=37.54  Aligned_cols=39  Identities=15%  Similarity=0.140  Sum_probs=27.0

Q ss_pred             cCCcEEE-EEeeCCCCCCChHHHHHHHHHHhC---CCCeEEEEccCCH
Q psy221           40 KKSKVVV-FMKGVPEAPRCGFSNAVVQILRMH---DVPYDSHDVLKDE   83 (205)
Q Consensus        40 ~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~---gV~~~e~DI~~d~   83 (205)
                      +...++| |..     +|||+|.+....|+++   ++.+..++++.++
T Consensus        50 ~gk~vll~F~a-----~~C~~C~~~~~~l~~l~~~~v~vv~v~~~~~~   92 (168)
T 2b1k_A           50 QGKPVLLNVWA-----TWCPTCRAEHQYLNQLSAQGIRVVGMNYKDDR   92 (168)
T ss_dssp             CSSCEEEEEEC-----TTCHHHHHHHHHHHHHHHTTCCEEEEEESCCH
T ss_pred             CCCEEEEEEEC-----CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCh
Confidence            3444555 555     8999999887776443   7888888876543

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=93.37  E-value=0.17  Score=37.18  Aligned_cols=62  Identities=15%  Similarity=0.186  Sum_probs=38.5

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHH-H-----------------HHHHHhCC
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIR-N-----------------GIKEYTSW   95 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~-~-----------------eL~~~~g~   95 (205)
                      ..++| |..     +|||+|......|.++       ++.+..++++.+++.. +                 ++.+..+-
T Consensus        29 k~vll~f~~-----~~C~~C~~~~~~l~~l~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v  103 (152)
T 3gl3_A           29 SVVYLDFWA-----SWCGPCRQSFPWMNQMQAKYKAKGFQVVAVNLDAKTGDAMKFLAQVPAEFTVAFDPKGQTPRLYGV  103 (152)
T ss_dssp             SEEEEEEEC-----TTCTHHHHHHHHHHHHHHHHGGGTEEEEEEECCSSHHHHHHHHHHSCCCSEEEECTTCHHHHHTTC
T ss_pred             CEEEEEEEC-----CcCHHHHHHHHHHHHHHHHhhcCCeEEEEEECCCCHHHHHHHHHHcCCCCceeECCcchhHHHcCC
Confidence            34444 555     8999999877666432       4667777777554322 2                 34444577


Q ss_pred             CCccEE-ee--CCeEe
Q psy221           96 PTIPQV-FI--NGEFV  108 (205)
Q Consensus        96 ~tvPqv-FI--~G~~I  108 (205)
                      ..+|.+ +|  +|+.+
T Consensus       104 ~~~P~~~lid~~G~i~  119 (152)
T 3gl3_A          104 KGMPTSFLIDRNGKVL  119 (152)
T ss_dssp             CSSSEEEEECTTSBEE
T ss_pred             CCCCeEEEECCCCCEE
Confidence            789995 55  56543

>3ppu_A Glutathione-S-transferase; GST fold; HET: GSH; 2.30A {Phanerochaete chrysosporium}

Probab=93.33  E-value=0.51  Score=41.39  Aligned_cols=75  Identities=5%  Similarity=0.168  Sum_probs=51.1

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCC----eEEEEccC-----------------------CHhHHHHHHHH
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVP----YDSHDVLK-----------------------DESIRNGIKEY   92 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~----~~e~DI~~-----------------------d~~~~~eL~~~   92 (205)
                      +..+..||..     ..||||.+++-+|...|++    +..++..+                       .+...+++.++
T Consensus        74 e~gry~Ly~s-----~~CP~a~Rv~i~l~lKGL~~~I~v~~v~~~~~~~gW~f~~~~~~~g~~~d~~~~~e~~~~~y~~~  148 (352)
T 3ppu_A           74 EKGRYHLYVS-----YACPWATRTLIVRKLKGLEDFIGVTVVSPRMGSNGWPFANVDPFPAADSDPLNNAQHVKDLYLKV  148 (352)
T ss_dssp             CTTSEEEEEC-----SSCHHHHHHHHHHHHTTCTTTSEEEECCSCCBTTBSBCTTTSCCTTCCCCTTTCCSBHHHHHHHH
T ss_pred             CCCcEEEEEe-----CCCchHHHHHHHHHHcCCCceeEEEEecCCCCCCCceeccccccCCCCcCcccccccchHHHHHh
Confidence            4678999999     9999999999999999986    22222211                       01234566665


Q ss_pred             h----CCCCccEEee---CCeEeechhHHHHHHh
Q psy221           93 T----SWPTIPQVFI---NGEFVGGCDILLKLHQ  119 (205)
Q Consensus        93 ~----g~~tvPqvFI---~G~~IGG~del~~l~e  119 (205)
                      .    |..+||.|..   ++..+-....|.++.+
T Consensus       149 nP~g~gr~kVPvL~d~~~g~~vl~ES~aI~~YL~  182 (352)
T 3ppu_A          149 KPDYDGRFTVPVLWDKHTGTIVNNESSEIIRMFN  182 (352)
T ss_dssp             CTTCCSCCCSCEEEETTTTEEEECCHHHHHHHHH
T ss_pred             CCCCCCCeeeeEEEEeCCCCEEEecHHHHHHHHH
Confidence            4    3449999998   4456666666666543

>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A

Probab=93.25  E-value=0.57  Score=35.53  Aligned_cols=22  Identities=23%  Similarity=0.317  Sum_probs=17.0

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILR   68 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~   68 (205)
                      ..||.|+.     -.||+|.+....+.
T Consensus        23 ~~vvEf~d-----y~Cp~C~~~~~~~~   44 (184)
T 4dvc_A           23 PVVSEFFS-----FYCPHCNTFEPIIA   44 (184)
T ss_dssp             CEEEEEEC-----TTCHHHHHHHHHHH
T ss_pred             CEEEEEEC-----CCCHhHHHHhHHHH
Confidence            35778988     99999998765553

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=93.11  E-value=0.27  Score=37.47  Aligned_cols=63  Identities=16%  Similarity=0.181  Sum_probs=39.3

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHh-HH-------------------HHHHHH
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDES-IR-------------------NGIKEY   92 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~-~~-------------------~eL~~~   92 (205)
                      ..|+| |..     +||+.|.+....|.++        ++.+..++++.+++ .+                   .++.+.
T Consensus        49 k~vll~F~a-----~wC~~C~~~~p~l~~l~~~~~~~~~v~vv~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  123 (165)
T 3s9f_A           49 KTVFFYFSA-----SWCPPCRGFTPQLVEFYEKHHDSKNFEIILASWDEEEDDFNAYYAKMPWLSIPFANRNIVEALTKK  123 (165)
T ss_dssp             SEEEEEEEC-----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECCCSHHHHHHHHTTCSSEECCTTCHHHHHHHHHH
T ss_pred             CEEEEEEEC-----CcChhHHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHhCCCcccccCchhHHHHHHHH
Confidence            44555 555     8999999887776433        45566666665532 11                   445555


Q ss_pred             hCCCCccEEee---C-CeEee
Q psy221           93 TSWPTIPQVFI---N-GEFVG  109 (205)
Q Consensus        93 ~g~~tvPqvFI---~-G~~IG  109 (205)
                      .+-..+|.++|   + |+.+.
T Consensus       124 ~~v~~~Pt~~lid~~~G~iv~  144 (165)
T 3s9f_A          124 YSVESIPTLIGLNADTGDTVT  144 (165)
T ss_dssp             TTCCSSSEEEEEETTTCCEEE
T ss_pred             cCCCCCCEEEEEeCCCCEEEe
Confidence            67778888765   2 66654

>1bg5_A MAB, fusion protein of alpha-Na,K-ATPase with glutathione S-transferase; ankyrin binding, carrier crystallization, ION transport; 2.60A {Rattus norvegicus} SCOP: a.45.1.1 c.47.1.5

Probab=92.99  E-value=0.023  Score=46.76  Aligned_cols=70  Identities=11%  Similarity=0.111  Sum_probs=47.6

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH---Hh-CCCCccEEeeCCeEeechhHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE---YT-SWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~---~~-g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      +.||.-     +.||+|.+++-+|+..||+|+.+.++... ..+.+..   +. ...++|.+..||..+.....|.+..+
T Consensus         3 ~~Ly~~-----~~s~~~~~vr~~L~~~gi~ye~~~v~~~~-~~~~~~~~~~~~~P~g~VPvL~d~~~~l~eS~aI~~yL~   76 (254)
T 1bg5_A            3 PILGYW-----KIKGLVQPTRLLLEYLEEKYEEHLYERDE-GDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRYIA   76 (254)
T ss_dssp             CBCCSC-----SCSTTTHHHHHHHHHTTCCCBCCCCCGGG-THHHHHHTTTTCCSSCCSSBCCCSSCCCBSHHHHHHHHH
T ss_pred             cEEEEe-----CCcchhHHHHHHHHHcCCCceEEeeCCCC-HHHHhhcccccCCCCCCCCEEEECCEEEecHHHHHHHHH
Confidence            456655     78999999999999999999988876421 0112221   11 34579999877777777666655443

>2b5e_A Protein disulfide-isomerase; 2.40A {Saccharomyces cerevisiae} SCOP: c.47.1.2 c.47.1.2 c.47.1.2 c.47.1.2 PDB: 3boa_A

Probab=92.86  E-value=0.32  Score=43.74  Aligned_cols=62  Identities=18%  Similarity=0.364  Sum_probs=43.7

Q ss_pred             HHHhcCC-cE-EEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--C
Q psy221           36 DEMVKKS-KV-VVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--N  104 (205)
Q Consensus        36 ~~~~~~~-~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~  104 (205)
                      +++++.+ .| |.|..     +||++|++....+++.       +|.+-.+|.+.++    .|....|-..+|.+++  +
T Consensus        25 ~~~~~~~~~~lv~F~a-----~wC~~C~~~~p~~~~~a~~~~~~~v~~~~vd~~~~~----~l~~~~~v~~~Pt~~~~~~   95 (504)
T 2b5e_A           25 NEYIQSHDLVLAEFFA-----PWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQ----DLCMEHNIPGFPSLKIFKN   95 (504)
T ss_dssp             HHHHTTCSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCH----HHHHHTTCCSSSEEEEEET
T ss_pred             HHHHhcCCeEEEEEEC-----CCCHHHHHhHHHHHHHHHHhccCCeEEEEEECCCCH----HHHHhcCCCcCCEEEEEeC
Confidence            3444444 33 44666     9999999998888542       4778888888775    4555667788998855  6


Q ss_pred             Ce
Q psy221          105 GE  106 (205)
Q Consensus       105 G~  106 (205)
                      |+
T Consensus        96 g~   97 (504)
T 2b5e_A           96 SD   97 (504)
T ss_dssp             TC
T ss_pred             Cc
Confidence            66

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=92.80  E-value=0.31  Score=37.55  Aligned_cols=63  Identities=13%  Similarity=0.095  Sum_probs=43.3

Q ss_pred             cCCcEEEEEeeCCCCCC--ChHHHHHHHHHHhCC-------CCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEe
Q psy221           40 KKSKVVVFMKGVPEAPR--CGFSNAVVQILRMHD-------VPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFV  108 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~--Cp~C~~ak~lL~~~g-------V~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~I  108 (205)
                      ...+|+|+...    ++  |+.|+.+.-+|+++.       +.+-.+|++++    .+|...+|-..+|.+  |-||+.+
T Consensus        33 ~~~~vlVdF~a----~~crCgpCk~iaPvleela~e~~g~~v~~~KVdvDe~----~~lA~~ygV~sIPTlilFk~G~~v  104 (140)
T 2qgv_A           33 QAPDGVVLLSS----DPKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQS----EAIGDRFGAFRFPATLVFTGGNYR  104 (140)
T ss_dssp             TCSSEEEEECC----CTTTCTTTTHHHHHHHHHHTTCTTSCCEEEECCHHHH----HHHHHHHTCCSSSEEEEEETTEEE
T ss_pred             CCCCEEEEEeC----CcccCCcHHHHHhHHHHHHHHcCCCeEEEEEEECCCC----HHHHHHcCCccCCEEEEEECCEEE
Confidence            44567665542    67  999999998886542       45555565543    467777788899987  5599887


Q ss_pred             ec
Q psy221          109 GG  110 (205)
Q Consensus       109 GG  110 (205)
                      +-
T Consensus       105 ~~  106 (140)
T 2qgv_A          105 GV  106 (140)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=92.74  E-value=0.23  Score=40.29  Aligned_cols=55  Identities=18%  Similarity=0.248  Sum_probs=37.2

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC---------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH---------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~---------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      ..|+| |..     +||++|++....|++.         ++.+..+|++.+.  ..++.+..+-..+|.+++
T Consensus        31 ~~vlv~F~a-----~wC~~C~~~~p~~~~l~~~~~~~~~~v~~~~vd~~~~~--~~~l~~~~~v~~~Pt~~~   95 (244)
T 3q6o_A           31 SAWAVEFFA-----SWCGHCIAFAPTWXALAEDVKAWRPALYLAALDCAEET--NSAVCRDFNIPGFPTVRF   95 (244)
T ss_dssp             SEEEEEEEC-----TTCHHHHHHHHHHHHHHHHTGGGTTTEEEEEEETTSTT--THHHHHHTTCCSSSEEEE
T ss_pred             CeEEEEEEC-----CcCHHHHHHHHHHHHHHHHHHhccCcEEEEEEeCCchh--hHHHHHHcCCCccCEEEE
Confidence            44444 666     9999999998877542         4567777774432  235566667888999854

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=92.73  E-value=0.53  Score=35.07  Aligned_cols=63  Identities=21%  Similarity=0.217  Sum_probs=38.7

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHh-------CCCCeEEEEccCCHhHHHH-------------------HHHHhC
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRM-------HDVPYDSHDVLKDESIRNG-------------------IKEYTS   94 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~-------~gV~~~e~DI~~d~~~~~e-------------------L~~~~g   94 (205)
                      .+|+| |..     +|||.|......|.+       .++.+-.++++...+..+.                   +....+
T Consensus        36 k~vll~F~a-----~wC~~C~~~~~~l~~l~~~~~~~~~~vv~i~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  110 (152)
T 2lrt_A           36 KVVLIDFTV-----YNNAMSAAHNLALRELYNKYASQGFEIYQISLDGDEHFWKTSADNLPWVCVRDANGAYSSYISLYN  110 (152)
T ss_dssp             SEEEEEEEC-----TTCHHHHHHHHHHHHHHHHHGGGTEEEEEEECSCCHHHHHHHHTTCSSEEEECSSGGGCHHHHHHT
T ss_pred             CEEEEEEEc-----CCChhhHHHHHHHHHHHHHhccCCeEEEEEEccCCHHHHHHHHhCCCceEEECCCCcchHHHHHcC
Confidence            34544 555     899999986655533       3566777777665532222                   444556


Q ss_pred             CCCccEEee---CCeEee
Q psy221           95 WPTIPQVFI---NGEFVG  109 (205)
Q Consensus        95 ~~tvPqvFI---~G~~IG  109 (205)
                      -..+|.+|+   +|+.+.
T Consensus       111 v~~~P~~~lid~~G~i~~  128 (152)
T 2lrt_A          111 VTNLPSVFLVNRNNELSA  128 (152)
T ss_dssp             CCSCSEEEEEETTTEEEE
T ss_pred             cccCceEEEECCCCeEEE
Confidence            677888765   676554

>3ga4_A Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit OST6; oxidoreductase, active site loop, redox state, membrane; HET: PG4; 1.30A {Saccharomyces cerevisiae} PDB: 3g7y_A 3g9b_A*

Probab=92.73  E-value=0.5  Score=37.74  Aligned_cols=57  Identities=7%  Similarity=0.118  Sum_probs=39.3

Q ss_pred             cEEEEEee-CCC--CCCChHHHHHHHHHHh-----------CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           43 KVVVFMKG-VPE--APRCGFSNAVVQILRM-----------HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        43 ~VvlYsk~-~~~--~~~Cp~C~~ak~lL~~-----------~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      .|+|+.+. .+.  ..||+.|+.+.-.|++           -+|.|-.+|+++++    ++....|-.++|.|++
T Consensus        39 ~vvV~F~A~~~~~~~~wCgpCk~l~P~~e~lA~~~~~~~~~~~v~f~kvD~d~~~----~la~~~~I~siPtl~~  109 (178)
T 3ga4_A           39 FNILYITMRGTNSNGMSCQLCHDFEKTYHAVADVIRSQAPQSLNLFFTVDVNEVP----QLVKDLKLQNVPHLVV  109 (178)
T ss_dssp             EEEEEEECCSBCTTSCBCHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEETTTCH----HHHHHTTCCSSCEEEE
T ss_pred             cEEEEEeCCCCCCCCCCChhHHHHHHHHHHHHHHhhhccCCCCEEEEEEECccCH----HHHHHcCCCCCCEEEE
Confidence            46555542 211  1599999999988864           23667888888766    4555667889999854

>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC, endoplasmic reticulum, glycoprotein, redox-active center; 2.00A {Saccharomyces cerevisiae}

Probab=92.56  E-value=0.45  Score=40.31  Aligned_cols=66  Identities=15%  Similarity=0.298  Sum_probs=43.6

Q ss_pred             HHHHHh-cCC-cEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-
Q psy221           34 SIDEMV-KKS-KVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-  103 (205)
Q Consensus        34 ~l~~~~-~~~-~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-  103 (205)
                      .+++++ +.+ .|+| |..     +||++|+.....|.+.      .+.+..+|++.+..  .+|....+-..+|.+++ 
T Consensus        26 ~f~~~i~~~~~~vlV~F~A-----~wC~~C~~~~p~~~~la~~~~~~~~~~~v~~d~~~~--~~l~~~~~I~~~Pt~~~~   98 (298)
T 3ed3_A           26 SFDKAIHNTNYTSLVEFYA-----PWCGHCKKLSSTFRKAAKRLDGVVQVAAVNCDLNKN--KALCAKYDVNGFPTLMVF   98 (298)
T ss_dssp             HHHHHHTSSSSCEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTSTTT--HHHHHHTTCCBSSEEEEE
T ss_pred             HHHHHHHhCCCeEEEEEEC-----CCCHHHHHHHHHHHHHHHHccCCcEEEEEEccCccC--HHHHHhCCCCccceEEEE
Confidence            345555 333 3544 666     9999999988877543      25677777764332  45666668888999866 


Q ss_pred             -CCe
Q psy221          104 -NGE  106 (205)
Q Consensus       104 -~G~  106 (205)
                       +|+
T Consensus        99 ~~g~  102 (298)
T 3ed3_A           99 RPPK  102 (298)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence             664

>2r2j_A Thioredoxin domain-containing protein 4; CRFS motif, chaperone, endoplasmic reticulum, S response; 2.60A {Homo sapiens}

Probab=92.23  E-value=0.24  Score=43.17  Aligned_cols=56  Identities=21%  Similarity=0.346  Sum_probs=39.8

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC------------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH------------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~------------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      +|.|..     +||++|++....+++.            +|.+-.+|.+.++    +|.+..+-..+|.+++  +|+.+
T Consensus        26 lV~F~a-----~wC~~C~~~~p~~~~~a~~~~~~~~~~~~v~~~~Vd~~~~~----~l~~~~~v~~~Pt~~~f~~G~~~   95 (382)
T 2r2j_A           26 LVNFYA-----DWCRFSQMLHPIFEEASDVIKEEFPNENQVVFARVDCDQHS----DIAQRYRISKYPTLKLFRNGMMM   95 (382)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHHTTCC---CCEEEEEEETTTCH----HHHHHTTCCEESEEEEEETTEEE
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEECCccH----HHHHhcCCCcCCEEEEEeCCcEe
Confidence            344666     9999999998877542            2667788887765    3555567788999865  77644

>2znm_A Thiol:disulfide interchange protein DSBA; thioredoxin fold, DSBA-like, oxidoreductase; 2.30A {Neisseria meningitidis serogroup B} PDB: 3dvx_A

Probab=92.13  E-value=0.21  Score=38.86  Aligned_cols=18  Identities=22%  Similarity=0.344  Sum_probs=14.7

Q ss_pred             CCCCccEEeeCCeE-eech
Q psy221           94 SWPTIPQVFINGEF-VGGC  111 (205)
Q Consensus        94 g~~tvPqvFI~G~~-IGG~  111 (205)
                      |-..+|.++|||++ +.|.
T Consensus       147 gv~gtPt~ving~~~~~g~  165 (195)
T 2znm_A          147 RIDSTPTVIVGGKYRVIFN  165 (195)
T ss_dssp             TCCSSSEEEETTTEEECCC
T ss_pred             CCCCCCeEEECCEEEEcCC
Confidence            66789999999996 7664

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=92.12  E-value=0.4  Score=35.35  Aligned_cols=41  Identities=12%  Similarity=0.151  Sum_probs=25.8

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHH
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIR   86 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~   86 (205)
                      ...|+| |..     +|||+|......|.++       ++.+..++++..+..+
T Consensus        24 gk~vlv~F~a-----~wC~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d~~~~~~   72 (151)
T 3raz_A           24 APVRIVNLWA-----TWCGPCRKEMPAMSKWYKAQKKGSVDMVGIALDTSDNIG   72 (151)
T ss_dssp             SSEEEEEEEC-----TTCHHHHHHHHHHHHHHHTSCTTTEEEEEEESSCHHHHH
T ss_pred             CCEEEEEEEc-----CcCHHHHHHHHHHHHHHHHhccCCeEEEEEECCChHHHH
Confidence            344555 555     9999999888777542       4556666665444433

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=91.99  E-value=0.92  Score=33.28  Aligned_cols=65  Identities=12%  Similarity=0.131  Sum_probs=38.7

Q ss_pred             CcEEE-EEeeCCCCCCChH--HHHHHHHHHh----C----CCCeEEEEccCCH-hHHH--------------------HH
Q psy221           42 SKVVV-FMKGVPEAPRCGF--SNAVVQILRM----H----DVPYDSHDVLKDE-SIRN--------------------GI   89 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~--C~~ak~lL~~----~----gV~~~e~DI~~d~-~~~~--------------------eL   89 (205)
                      ..|+| |..     +||+.  |......|.+    +    ++.+-.++++.++ ..++                    ++
T Consensus        34 k~vll~F~a-----~~C~~v~C~~~~~~l~~l~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  108 (150)
T 3fw2_A           34 KSLLINFWA-----SWNDSISQKQSNSELREIYKKYKKNKYIGMLGISLDVDKQQWKDAIKRDTLDWEQVCDFGGLNSEV  108 (150)
T ss_dssp             SEEEEEEEC-----TTCCCHHHHHHHHHHHHHHHHHTTCSSEEEEEEECCSCHHHHHHHHHHTTCCSEEECCSCGGGCHH
T ss_pred             CEEEEEEEe-----CCCCchHHHHHHHHHHHHHHHhccCCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEEcCcccchHH
Confidence            44555 555     89999  9987666632    2    4556666666553 3332                    33


Q ss_pred             HHHhCCCCccEEee---CCeEeech
Q psy221           90 KEYTSWPTIPQVFI---NGEFVGGC  111 (205)
Q Consensus        90 ~~~~g~~tvPqvFI---~G~~IGG~  111 (205)
                      .+..|-..+|.+|+   +|+.+.-.
T Consensus       109 ~~~~~v~~~P~~~lid~~G~i~~~~  133 (150)
T 3fw2_A          109 AKQYSIYKIPANILLSSDGKILAKN  133 (150)
T ss_dssp             HHHTTCCSSSEEEEECTTSBEEEES
T ss_pred             HHHcCCCccCeEEEECCCCEEEEcc
Confidence            44456677888765   57665543

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=91.98  E-value=1  Score=33.13  Aligned_cols=34  Identities=21%  Similarity=0.060  Sum_probs=20.7

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHH-HHHHHH----hC---CCCeEEEEc
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNA-VVQILR----MH---DVPYDSHDV   79 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~-ak~lL~----~~---gV~~~e~DI   79 (205)
                      ...|+| |..     +||++|.. +...|.    ++   ++.+..+++
T Consensus        30 gk~vlv~F~a-----~~C~~C~~e~~~~l~~l~~~~~~~~v~~v~v~~   72 (160)
T 3lor_A           30 GKVVVVEVFQ-----MLCPGCVNHGVPQAQKIHRMIDESQVQVIGLHS   72 (160)
T ss_dssp             TSEEEEEEEC-----TTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             CCEEEEEEEc-----CCCcchhhhhhHHHHHHHHHhCcCCcEEEEEec
Confidence            344555 555     89999998 565553    33   355555554

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=91.21  E-value=0.029  Score=40.94  Aligned_cols=21  Identities=19%  Similarity=0.153  Sum_probs=15.6

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM   69 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~   69 (205)
                      ++.|..     +|||+|......|.+
T Consensus        30 ll~F~a-----~wC~~C~~~~~~l~~   50 (143)
T 2lus_A           30 GFYFSA-----HWCPPCRGFTPILAD   50 (143)
Confidence            344555     899999988877754

>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}

Probab=91.94  E-value=0.37  Score=35.61  Aligned_cols=47  Identities=13%  Similarity=0.371  Sum_probs=36.5

Q ss_pred             HHHHHHHHhCCCCeEEEEccCCHh-------HHHHHHHHhCCCCccEEeeCCeEe
Q psy221           61 NAVVQILRMHDVPYDSHDVLKDES-------IRNGIKEYTSWPTIPQVFINGEFV  108 (205)
Q Consensus        61 ~~ak~lL~~~gV~~~e~DI~~d~~-------~~~eL~~~~g~~tvPqvFI~G~~I  108 (205)
                      ..+.+.|++.|+.++.+++..+|.       +.+.|.+ .|...+|.++|||+.+
T Consensus        33 ~~~~~~lk~~Gi~V~RyNL~~~P~~F~~N~~V~~~L~~-~G~~~LP~~~VDGevv   86 (106)
T 3ktb_A           33 AVVIESLKKQGIIVTRHNLRDEPQVYVSNKTVNDFLQK-HGADALPITLVDGEIA   86 (106)
T ss_dssp             HHHHHHHHHTTCCCEEEETTTCTTHHHHSHHHHHHHHT-TCGGGCSEEEETTEEE
T ss_pred             HHHHHHHHHCCCEEEEEccccChHHHhcCHHHHHHHHH-cCcccCCEEEECCEEE
Confidence            345677888999999999998864       4444443 5888999999999865

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=91.81  E-value=0.12  Score=39.30  Aligned_cols=49  Identities=12%  Similarity=0.169  Sum_probs=28.8

Q ss_pred             CChHHHHHHHHHHh----C-CCC--eEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           56 RCGFSNAVVQILRM----H-DVP--YDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        56 ~Cp~C~~ak~lL~~----~-gV~--~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      +|+.|+.+.-.|++    + ++.  +-.+|++.++    ++....+-..+|.+++  +|+.+
T Consensus        47 ~C~~C~~l~P~l~~la~~~~~v~~~~~~Vd~d~~~----~la~~~~V~~iPT~~~fk~G~~v  104 (142)
T 2es7_A           47 RTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSE----AIGDRFNVRRFPATLVFTDGKLR  104 (142)
T ss_dssp             C----CCHHHHHHHHHHTCTTSCCEEEEECHHHHH----HHHHTTTCCSSSEEEEESCC---
T ss_pred             CCccHHHHHHHHHHHHHHhcccceeEEEEECCCCH----HHHHhcCCCcCCeEEEEeCCEEE
Confidence            39999998877754    2 466  6677776443    4555667889999866  77644

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=91.76  E-value=0.9  Score=34.85  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=18.6

Q ss_pred             CCChHHHHHHHHHHh-------CCCCeEEEEcc
Q psy221           55 PRCGFSNAVVQILRM-------HDVPYDSHDVL   80 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~-------~gV~~~e~DI~   80 (205)
                      +||+.|......|.+       .++.+..++++
T Consensus        56 ~~C~~C~~~~~~l~~l~~~~~~~~v~vv~v~~d   88 (196)
T 2ywi_A           56 NHCPFVKHVQHELVRLANDYMPKGVSFVAINSN   88 (196)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHGGGTCEEEEEECS
T ss_pred             CCCccHHHHHHHHHHHHHHHHhCCcEEEEEECC
Confidence            899999876665543       25777777774

>3m1g_A Putative glutathione S-transferase; ECM4-like subfamily, GST_C family, structural genomics, PSI- protein structure initiative; 2.10A {Corynebacterium glutamicum}

Probab=91.75  E-value=0.21  Score=44.28  Aligned_cols=36  Identities=11%  Similarity=0.159  Sum_probs=30.0

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCC-eEEEEcc
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVP-YDSHDVL   80 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~-~~e~DI~   80 (205)
                      +..++.||..     ..||+|.+++-+|+.+|++ +..+|+.
T Consensus        58 e~gr~~LY~~-----~~cP~a~Rv~I~L~lkGL~e~i~vdl~   94 (362)
T 3m1g_A           58 EAGRYRLVAA-----RACPWAHRTVITRRLLGLENVISLGLT   94 (362)
T ss_dssp             CTTSEEEEEC-----TTCHHHHHHHHHHHHHTCTTTSEEEEC
T ss_pred             CCCeEEEEec-----CCCccHHHHHHHHHHhCCCceEEEecc
Confidence            4578999999     9999999999999999997 4455554

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=91.58  E-value=0.56  Score=36.29  Aligned_cols=95  Identities=8%  Similarity=0.021  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHhc-CCcEEEEEeeCCCCCCChHHHHHH----------HHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCC
Q psy221           29 TDVQKSIDEMVK-KSKVVVFMKGVPEAPRCGFSNAVV----------QILRMHDVPYDSHDVLKDESIRNGIKEYTSWPT   97 (205)
Q Consensus        29 ~~~~~~l~~~~~-~~~VvlYsk~~~~~~~Cp~C~~ak----------~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~t   97 (205)
                      .++++.+.+..+ ..+|+|+..+    +||++|+...          ++|++ +.-+-.+|+  +...-.+|.+..+...
T Consensus        29 ~~~~~Al~~Ak~~~K~vlvd~~a----~wC~~C~~me~~vf~d~~V~~~l~~-~fv~v~~d~--~~~~~~~l~~~y~v~~  101 (153)
T 2dlx_A           29 GSFETAKECGQMQNKWLMINIQN----VQDFACQCLNRDVWSNEAVKNIIRE-HFIFWQVYH--DSEEGQRYIQFYKLGD  101 (153)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEEC----SCTTTHHHHHHHTTTCHHHHHHHHH-TEEEEEEES--SSHHHHHHHHHHTCCS
T ss_pred             cCHHHHHHHHHHcCCeEEEEEEC----CCCHhHHHHHHHhcCCHHHHHHHHc-CeEEEEEec--CCHhHHHHHHHcCCCC
Confidence            467777776655 4567776664    8999998873          44433 222334455  3333345666677788


Q ss_pred             ccEE-eeC---Ce---EeechhHHHHHHhcccHHHHHhhcCCc
Q psy221           98 IPQV-FIN---GE---FVGGCDILLKLHQSGELVEQLEKGDQK  133 (205)
Q Consensus        98 vPqv-FI~---G~---~IGG~del~~l~e~GeL~~~L~~~~~~  133 (205)
                      +|.+ |+|   |+   .++|. +..++.  ..|++.++..+..
T Consensus       102 ~P~~~fld~~~G~~l~~~~g~-~~~~fl--~~L~~~l~~~~~~  141 (153)
T 2dlx_A          102 FPYVSILDPRTGQKLVEWHQL-DVSSFL--DQVTGFLGEHGQL  141 (153)
T ss_dssp             SSEEEEECTTTCCCCEEESSC-CHHHHH--HHHHHHHHHTCSC
T ss_pred             CCEEEEEeCCCCcEeeecCCC-CHHHHH--HHHHHHHHhcCCC
Confidence            9988 444   42   25663 333332  2466666665443

>3kgk_A Arsenical resistance operon trans-acting represso; alpha+beta, chaperone, DNA-binding, RE transcription, transcription regulation; 1.40A {Escherichia coli} PDB: 3mwh_A

Probab=91.57  E-value=0.39  Score=35.76  Aligned_cols=47  Identities=19%  Similarity=0.341  Sum_probs=36.5

Q ss_pred             HHHHHHHHhCCCCeEEEEccCCHh-------HHHHHHHHhCCCCccEEeeCCeEe
Q psy221           61 NAVVQILRMHDVPYDSHDVLKDES-------IRNGIKEYTSWPTIPQVFINGEFV  108 (205)
Q Consensus        61 ~~ak~lL~~~gV~~~e~DI~~d~~-------~~~eL~~~~g~~tvPqvFI~G~~I  108 (205)
                      ....+.|++.|+.++.+++..+|.       +.+.|.+ .|...+|.++|||+.+
T Consensus        30 ~~~~~~lk~~Gi~V~RyNL~~~P~aF~~N~~V~~~L~~-~G~~~LP~~~VDGevv   83 (110)
T 3kgk_A           30 STDVQWLKQSGVQIERFNLAQQPMSFVQNEKVKAFIEA-SGAEGLPLLLLDGETV   83 (110)
T ss_dssp             HHHHHHHHHHTCCEEEEETTTCTTHHHHSHHHHHHHHH-HCGGGCCEEEETTEEE
T ss_pred             HHHHHHHHHCCCeEEEEccccChHHHhcCHHHHHHHHH-cCcccCCEEEECCEEE
Confidence            345677888999999999998864       4444443 4888999999999865

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=90.92  E-value=0.37  Score=34.65  Aligned_cols=35  Identities=14%  Similarity=0.308  Sum_probs=22.8

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHh----C---CCCeEEEEccC
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRM----H---DVPYDSHDVLK   81 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~----~---gV~~~e~DI~~   81 (205)
                      .+++| |..     +||++|......|.+    +   ++.+..++++.
T Consensus        35 k~~ll~f~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~   77 (145)
T 3erw_A           35 QKTILHFWT-----SWCPPCKKELPQFQSFYDAHPSDSVKLVTVNLVN   77 (145)
T ss_dssp             SEEEEEEEC-----SSCHHHHHHHHHHHHHHHHCCCSSEEEEEEECGG
T ss_pred             CEEEEEEEC-----CCCHHHHHHHHHHHHHHHHcCCCCEEEEEEEccC
Confidence            34444 555     999999998777754    3   45556666643

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=90.32  E-value=1.1  Score=36.56  Aligned_cols=74  Identities=15%  Similarity=0.290  Sum_probs=50.6

Q ss_pred             ChHHHHHHHHHhcC--CcE-EEEEeeCCCCCC--ChHHHHHHHHHHhCC-----------CCeEEEEccCCHhHHHHHHH
Q psy221           28 STDVQKSIDEMVKK--SKV-VVFMKGVPEAPR--CGFSNAVVQILRMHD-----------VPYDSHDVLKDESIRNGIKE   91 (205)
Q Consensus        28 ~~~~~~~l~~~~~~--~~V-vlYsk~~~~~~~--Cp~C~~ak~lL~~~g-----------V~~~e~DI~~d~~~~~eL~~   91 (205)
                      ..+..+.++++++.  .+| +.|..     +|  |++|+.++.+|++..           |.|..+|.+.+++    +.+
T Consensus        10 ~~~~~~ql~~~~~~~~~pv~v~~~~-----~~~~c~~c~~~~~~l~ela~~~~~~~~~~~v~~~~vd~d~~~~----~~~   80 (243)
T 2hls_A           10 SEDFRRELRETLAEMVNPVEVHVFL-----SKSGCETCEDTLRLMKLFEEESPTRNGGKLLKLNVYYRESDSD----KFS   80 (243)
T ss_dssp             CHHHHHHHHHHHTTCCSCEEEEEEE-----CSSSCTTHHHHHHHHHHHHHHSCEETTEESEEEEEEETTTTHH----HHH
T ss_pred             CHHHHHHHHHHHHhCCCCEEEEEEe-----CCCCCCchHHHHHHHHHHHHhccCCCCCceeEEEEecCCcCHH----HHH
Confidence            56677777777754  444 45666     77  999999999986531           7777888776654    344


Q ss_pred             HhCCCCccEEee-CC--eEeec
Q psy221           92 YTSWPTIPQVFI-NG--EFVGG  110 (205)
Q Consensus        92 ~~g~~tvPqvFI-~G--~~IGG  110 (205)
                      ..|-..+|.+.+ +|  ++.|.
T Consensus        81 ~~gv~~~Pt~~i~~g~~~~~G~  102 (243)
T 2hls_A           81 EFKVERVPTVAFLGGEVRWTGI  102 (243)
T ss_dssp             HTTCCSSSEEEETTTTEEEESC
T ss_pred             hcCCCcCCEEEEECCceeEcCC
Confidence            456668899866 44  55553

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=89.91  E-value=1.3  Score=33.91  Aligned_cols=14  Identities=14%  Similarity=0.368  Sum_probs=10.3

Q ss_pred             CCChHHHHHHHHHH
Q psy221           55 PRCGFSNAVVQILR   68 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~   68 (205)
                      ++|+.|......|+
T Consensus        43 ~~C~~C~~~~~~l~   56 (188)
T 2cvb_A           43 NHCPYVKGSIGELV   56 (188)
T ss_dssp             SSCHHHHTTHHHHH
T ss_pred             CCCccHHHHHHHHH
Confidence            89999987554443

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=89.90  E-value=2.1  Score=40.53  Aligned_cols=51  Identities=20%  Similarity=0.173  Sum_probs=36.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C--CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H--DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~--gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +|.|..     +||+.|++....|++    +  ++.+..+|++.+++    +.+..+-..+|.+++
T Consensus       679 ~v~F~a-----~wC~~C~~~~p~~~~la~~~~~~~~~~~vd~~~~~~----~~~~~~v~~~Pt~~~  735 (780)
T 3apo_A          679 VVDFYA-----PWSGPSQNFAPEFELLARMIKGKVRAGKVDCQAYPQ----TCQKAGIKAYPSVKL  735 (780)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEE
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHhcCCceEEEEECCCCHH----HHHhcCCCcCCEEEE
Confidence            444666     999999998877643    2  56788888877664    444557788999866

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=89.60  E-value=0.69  Score=34.23  Aligned_cols=15  Identities=7%  Similarity=0.084  Sum_probs=12.3

Q ss_pred             CCChHHHHHHHHHHh
Q psy221           55 PRCGFSNAVVQILRM   69 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~   69 (205)
                      +||++|......|.+
T Consensus        48 ~~C~~C~~~~~~l~~   62 (164)
T 2h30_A           48 SWCPLCLSELGQAEK   62 (164)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            999999998777643

>2fno_A AGR_PAT_752P; thioredoxin fold, GST C-terminal domain-like fold, structura genomics, joint center for structural genomics, JCSG; 2.00A {Agrobacterium tumefaciens} SCOP: a.45.1.1 c.47.1.5

Probab=89.29  E-value=0.51  Score=38.59  Aligned_cols=70  Identities=13%  Similarity=0.045  Sum_probs=48.2

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH-----HhCCCCccEE--eeCCeEeechh
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE-----YTSWPTIPQV--FINGEFVGGCD  112 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~-----~~g~~tvPqv--FI~G~~IGG~d  112 (205)
                      +...+.+|..     +..+.|.+++-+|+..||+|+.++++.   ....++.     +.-...+|.+  ..||..|....
T Consensus        16 ~~~~~~Ly~~-----~~~~~~~~vrl~L~e~gi~ye~~~~~~---~~~~~~~~~~~~~nP~gkVPvL~~~d~g~~l~ES~   87 (248)
T 2fno_A           16 GMNTFDLYYW-----PVPFRGQLIRGILAHCGCSWDEHDVDA---IEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMP   87 (248)
T ss_dssp             SCBSEEEECC-----SSSSTTHHHHHHHHHTTCCEECCCHHH---HHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHH
T ss_pred             CCCceEEEec-----CCCCchHHHHHHHHHcCCCcEeeccch---HHHHHhccccccCCCCCCCCEEEeccCCEEEecHH
Confidence            3557888877     656678999999999999999886642   1112221     2335689999  55777777766


Q ss_pred             HHHHH
Q psy221          113 ILLKL  117 (205)
Q Consensus       113 el~~l  117 (205)
                      .|.+.
T Consensus        88 AI~~Y   92 (248)
T 2fno_A           88 AIAIY   92 (248)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65554

>3f8u_A Protein disulfide-isomerase A3ERP57; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} PDB: 2dmm_A 2alb_A

Probab=89.06  E-value=0.95  Score=40.20  Aligned_cols=55  Identities=22%  Similarity=0.353  Sum_probs=40.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC-----C-CCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeE
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH-----D-VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEF  107 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----g-V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~  107 (205)
                      +|.|..     +||++|++....|.+.     + |.+-.+|.+.+++    |.+..|-..+|.+++  +|+.
T Consensus        25 lv~F~a-----~wC~~C~~~~p~~~~~a~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Ptl~~~~~g~~   87 (481)
T 3f8u_A           25 LVEFFA-----PWCGHAKRLAPEYEAAATRLKGIVPLAKVDCTANTN----TCNKYGVSGYPTLKIFRDGEE   87 (481)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTCCEEEEETTTCHH----HHHHTTCCEESEEEEEETTEE
T ss_pred             EEEEEC-----CCCHHHHHhHHHHHHHHHHhcCceEEEEEECCCCHH----HHHhcCCCCCCEEEEEeCCce
Confidence            344666     9999999998888543     2 7888999887764    445567788998855  7753

>2ywm_A Glutaredoxin-like protein; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 2.30A {Aquifex aeolicus} PDB: 2ayt_A

Probab=88.87  E-value=1  Score=35.62  Aligned_cols=45  Identities=11%  Similarity=0.171  Sum_probs=28.6

Q ss_pred             CCChHHHHHHHHHHhC--------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           55 PRCGFSNAVVQILRMH--------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +||++|+.....+.+.        .|.+..+|.+.+++    |.+..|-..+|.+.+
T Consensus        35 ~~C~~c~~~~~~~~~~a~~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Ptl~~   87 (229)
T 2ywm_A           35 ESCQTAEELLKETVEVIGEAVGQDKIKLDIYSPFTHKE----ETEKYGVDRVPTIVI   87 (229)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHHCTTTEEEEEECTTTCHH----HHHHTTCCBSSEEEE
T ss_pred             cccHHHHHHHHHHHHHHhccCCCCceEEEEecCcccHH----HHHHcCCCcCcEEEE
Confidence            4555555555555543        36677788776654    455567778898865

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=88.64  E-value=0.96  Score=33.56  Aligned_cols=60  Identities=15%  Similarity=0.256  Sum_probs=34.2

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHh----C---CCCeEEEEccCC-H--------------hHHHHHHHHhCCCCc
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRM----H---DVPYDSHDVLKD-E--------------SIRNGIKEYTSWPTI   98 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~----~---gV~~~e~DI~~d-~--------------~~~~eL~~~~g~~tv   98 (205)
                      ..|+| |..     +||+.|......|.+    +   ++.+-.++++.+ .              ....++.+..+-..+
T Consensus        42 k~vll~F~~-----~~C~~C~~~~~~l~~~~~~~~~~~~~~v~v~~d~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~  116 (158)
T 3hdc_A           42 KIVLVNFWA-----SWCPYCRDEMPSMDRLVKSFPKGDLVVLAVNVEKRFPEKYRRAPVSFNFLSDATGQVQQRYGANRL  116 (158)
T ss_dssp             SEEEEEEEC-----TTCHHHHHHHHHHHHHHHHSSTTSEEEEEEECSSSCCGGGGGCCCSCEEEECTTSHHHHHTTCCSS
T ss_pred             CEEEEEEEC-----CcCHHHHHHHHHHHHHHHHcccCCeEEEEEeCCHHHHHHHHHcCCCceEEECchHHHHHHhCCCCc
Confidence            34544 555     999999986666643    3   344444454431 0              001355566677889


Q ss_pred             cEE-ee--CCe
Q psy221           99 PQV-FI--NGE  106 (205)
Q Consensus        99 Pqv-FI--~G~  106 (205)
                      |.+ +|  +|+
T Consensus       117 P~~~lid~~G~  127 (158)
T 3hdc_A          117 PDTFIVDRKGI  127 (158)
T ss_dssp             SEEEEECTTSB
T ss_pred             ceEEEEcCCCC
Confidence            984 55  454

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=88.28  E-value=3.1  Score=30.36  Aligned_cols=33  Identities=9%  Similarity=0.056  Sum_probs=20.2

Q ss_pred             CcEEE-EEeeCCCCCCChHHHH-HHHHHHh----C---CCCeEEEEc
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNA-VVQILRM----H---DVPYDSHDV   79 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~-ak~lL~~----~---gV~~~e~DI   79 (205)
                      ..|+| |..     +||++|.. +...|.+    +   ++.+..+++
T Consensus        29 k~vlv~f~a-----~wC~~C~~~~~~~l~~l~~~~~~~~v~~v~v~~   70 (158)
T 3eyt_A           29 KVIVIEAFQ-----MLCPGCVMHGIPLAQKVRAAFPEDKVAVLGLHT   70 (158)
T ss_dssp             SEEEEEEEC-----TTCHHHHHTHHHHHHHHHHHSCTTTEEEEEEEC
T ss_pred             CEEEEEEEC-----CcCcchhhhhhHHHHHHHHHhCcCCEEEEEEEe
Confidence            34555 555     89999998 4555533    3   455555554

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=87.84  E-value=1.4  Score=33.48  Aligned_cols=28  Identities=7%  Similarity=0.003  Sum_probs=19.5

Q ss_pred             CCChHHHHHHHHHHh-------CCCCeEEEEccCC
Q psy221           55 PRCGFSNAVVQILRM-------HDVPYDSHDVLKD   82 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~-------~gV~~~e~DI~~d   82 (205)
                      +||+.|......|++       .++.+-.++++.+
T Consensus        70 ~~C~~C~~~~~~l~~l~~~~~~~~~~vv~v~~d~~  104 (186)
T 1jfu_A           70 TWCVPCRKEMPALDELQGKLSGPNFEVVAINIDTR  104 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCBTTEEEEEEECCCS
T ss_pred             CCCHhHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence            899999987666643       2466666776654

>3qcp_A QSOX from trypanosoma brucei (tbqsox); ERV fold, thioredoxin fold, sulfhydryl oxidase, oxidoreducta; HET: FAD; 2.30A {Trypanosoma brucei} PDB: 3qd9_A*

Probab=87.36  E-value=1.3  Score=40.66  Aligned_cols=51  Identities=12%  Similarity=0.264  Sum_probs=37.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----CC----------CCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----HD----------VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~g----------V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      ||.|..     +||++|+.....|.+    +.          |.+-.+|++.++    ++.+..+-..+|.+++
T Consensus        46 lV~FyA-----~WC~pCk~~~P~l~~la~~~~~~~g~~~~~~v~f~~VD~d~~~----~la~~y~V~~~PTlil  110 (470)
T 3qcp_A           46 IVLFYN-----DGCGACRRYASTFSKFAGGLKVEHGKDALQIATAAAVNCASEV----DLCRKYDINFVPRLFF  110 (470)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHTSCCSSCSSGGGGCEEEEEETTTCH----HHHHHTTCCSSCEEEE
T ss_pred             EEEEEC-----CCCHHHHHHHHHHHHHHHHHhhhcccccCceEEEEEEECCCCH----HHHHHcCCCccCeEEE
Confidence            444666     999999999888754    32          677888887775    4455567788999854

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=87.35  E-value=1.4  Score=37.59  Aligned_cols=62  Identities=11%  Similarity=0.275  Sum_probs=39.1

Q ss_pred             HHHHhcCC-cE-EEEEeeCCCCCCChHHHHH--------------HHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCc
Q psy221           35 IDEMVKKS-KV-VVFMKGVPEAPRCGFSNAV--------------VQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTI   98 (205)
Q Consensus        35 l~~~~~~~-~V-vlYsk~~~~~~~Cp~C~~a--------------k~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tv   98 (205)
                      ++++++.+ .| |.|..     +||+ |++.              .+.|...+|.+-.+|.+.+++    +.+..+-..+
T Consensus        21 f~~~i~~~~~~lV~F~a-----~wC~-c~~~~p~~~~~~~~~~~~a~~~~~~~v~~~~Vd~~~~~~----l~~~~~v~~~   90 (350)
T 1sji_A           21 FKQVLKKYDVLCLYYHE-----SVSS-DKVAQKQFQLKEIVLELVAQVLEHKDIGFVMVDAKKEAK----LAKKLGFDEE   90 (350)
T ss_dssp             HHHHHTTCSEEEEEEEC-----CSCS-SSTTSHHHHHHHHHHHHHHHHGGGSSEEEEEEETTTTHH----HHHHHTCCST
T ss_pred             HHHHHhhCCeEEEEEEC-----CCCc-chhhCchhhhhhHHHHHHHHHHhhcCcEEEEEeCCCCHH----HHHhcCCCcc
Confidence            45566554 34 34666     9999 8432              222333468888899887764    4445577788


Q ss_pred             cEEee--CCe
Q psy221           99 PQVFI--NGE  106 (205)
Q Consensus        99 PqvFI--~G~  106 (205)
                      |.+++  +|+
T Consensus        91 Pt~~~~~~g~  100 (350)
T 1sji_A           91 GSLYVLKGDR  100 (350)
T ss_dssp             TEEEEEETTE
T ss_pred             ceEEEEECCc
Confidence            98854  775

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=87.13  E-value=0.34  Score=34.17  Aligned_cols=24  Identities=21%  Similarity=0.228  Sum_probs=16.9

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHHh
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRM   69 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~   69 (205)
                      ...++| |..     +||++|......|.+
T Consensus        22 gk~~lv~f~~-----~~C~~C~~~~~~l~~   46 (138)
T 4evm_A           22 GKKVYLKFWA-----SWCSICLASLPDTDE   46 (138)
T ss_dssp             TSEEEEEECC-----TTCHHHHHHHHHHHH
T ss_pred             CCEEEEEEEc-----CcCHHHHHHHHHHHH
Confidence            344555 555     899999988877754

>3us3_A Calsequestrin-1; calcium-binding protein; 1.74A {Oryctolagus cuniculus} PDB: 1a8y_A 3v1w_A* 3trq_A* 3trp_A* 3uom_A

Probab=87.08  E-value=1.1  Score=38.88  Aligned_cols=54  Identities=17%  Similarity=0.222  Sum_probs=35.6

Q ss_pred             EEEEeeCCCCCCChHHHHHH-------------HHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeE
Q psy221           45 VVFMKGVPEAPRCGFSNAVV-------------QILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEF  107 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak-------------~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~  107 (205)
                      |.|..     +||++|...+             +.|...+|.+-.+|.+.+++    |.+..|-..+|.+  |-+|+.
T Consensus        35 V~FyA-----pWC~~~~~~~~l~~~~p~~e~~a~~~~~~~v~~~~Vd~~~~~~----l~~~~~V~~~PTl~~f~~G~~  103 (367)
T 3us3_A           35 LLYHE-----PPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAA----VAKKLGLTEEDSIYVFKEDEV  103 (367)
T ss_dssp             EEEEC-----CCCSSHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEETTTTHH----HHHHHTCCSTTEEEEEETTEE
T ss_pred             EEEEC-----CCchhHHHhhhhccccHHHHHHHHHhhcCCceEEEEeCcccHH----HHHHcCCCcCceEEEEECCcE
Confidence            44667     9999974443             12223367888999887764    4555577788977  447864

>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17

Probab=86.53  E-value=2.5  Score=31.17  Aligned_cols=67  Identities=19%  Similarity=0.249  Sum_probs=39.8

Q ss_pred             cCCcEEEEEeeCCCCCCChHH------HHHHHHHH-----hC---CCCeEEEEccCCHhH----HHHHH-HHhC-CCCcc
Q psy221           40 KKSKVVVFMKGVPEAPRCGFS------NAVVQILR-----MH---DVPYDSHDVLKDESI----RNGIK-EYTS-WPTIP   99 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C------~~ak~lL~-----~~---gV~~~e~DI~~d~~~----~~eL~-~~~g-~~tvP   99 (205)
                      ++-.|+||+..    .-|+-|      +...+.|+     ++   ...|+.+||...++-    .+++. ++.. .--+|
T Consensus         6 ~~v~i~VYGAe----~iCASCVnaPSSkeTyEWLqAal~RKyp~~~f~~~YIDI~~~~~~l~d~~~~~ae~I~ede~FYP   81 (111)
T 1xg8_A            6 QSNAVVVYGAD----VICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYP   81 (111)
T ss_dssp             SCEEEEEEECS----SCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSS
T ss_pred             eEEEEEEEccc----ccchhccCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCccchhHHHHHHHHHHhhccccce
Confidence            34568889774    457666      44455553     23   345788898654322    33333 3333 34679


Q ss_pred             EEeeCCeEeec
Q psy221          100 QVFINGEFVGG  110 (205)
Q Consensus       100 qvFI~G~~IGG  110 (205)
                      .|.|+|+.||.
T Consensus        82 lV~indeiVaE   92 (111)
T 1xg8_A           82 LITMNDEYVAD   92 (111)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCEEeec
Confidence            99999999974

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=86.41  E-value=0.14  Score=38.26  Aligned_cols=35  Identities=14%  Similarity=0.214  Sum_probs=21.8

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh---------CCCCeEEEEccCCH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM---------HDVPYDSHDVLKDE   83 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~---------~gV~~~e~DI~~d~   83 (205)
                      ++.|..     +|||.|......|.+         .++.+..++++.++
T Consensus        37 ll~f~a-----~~C~~C~~~~~~l~~~l~~~~~~~~~~~vv~v~~d~~~   80 (159)
T 2ls5_A           37 MLQFTA-----SWCGVCRKEMPFIEKDIWLKHKDNADFALIGIDRDEPL   80 (159)
Confidence            444555     899999987766655         23445555555443

>3uem_A Protein disulfide-isomerase; thioredoxin-like domain, chaper; 2.29A {Homo sapiens} PDB: 2k18_A 1x5c_A 1bjx_A 2bjx_A

Probab=84.86  E-value=0.78  Score=39.10  Aligned_cols=49  Identities=20%  Similarity=0.334  Sum_probs=33.0

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC--------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH--------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~--------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      +|.|..     +||++|++....|+++        ++.+..+|.+.+.      ....+-..+|.+++
T Consensus       271 lv~f~a-----~wC~~C~~~~p~~~~la~~~~~~~~v~~~~vd~~~~~------~~~~~v~~~Pt~~~  327 (361)
T 3uem_A          271 FVEFYA-----PWCGHCKQLAPIWDKLGETYKDHENIVIAKMDSTANE------VEAVKVHSFPTLKF  327 (361)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHTTTCSSEEEEEEETTTCB------CSSCCCCSSSEEEE
T ss_pred             EEEEec-----CcCHhHHHHHHHHHHHHHHhccCCcEEEEEEECCccc------hhhcCCcccCeEEE
Confidence            455666     9999999998888654        2445566665554      12346778999854

>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}

Probab=84.76  E-value=2.9  Score=33.22  Aligned_cols=41  Identities=15%  Similarity=0.239  Sum_probs=32.1

Q ss_pred             hcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC
Q psy221           39 VKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD   82 (205)
Q Consensus        39 ~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d   82 (205)
                      +...+|.|.+.|.   +.=|.++++...|+++|++|+.+=++-|
T Consensus         4 m~~~~V~IimgS~---SD~~v~~~a~~~l~~~gi~~ev~V~SaH   44 (169)
T 3trh_A            4 MNKIFVAILMGSD---SDLSTMETAFTELKSLGIPFEAHILSAH   44 (169)
T ss_dssp             --CCEEEEEESCG---GGHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCCcEEEEECcH---HhHHHHHHHHHHHHHcCCCEEEEEEccc
Confidence            3445687777754   5568899999999999999998888877

>4gci_A Glutathione S-transferase; GST, enzyme function initiative, structural genomics; HET: GSH; 1.50A {Yersinia pestis} PDB: 4g9h_A*

Probab=84.61  E-value=0.9  Score=35.65  Aligned_cols=68  Identities=12%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--H-hHHHHHHHHhCCCCccEEeeCC-eEeechhHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--E-SIRNGIKEYTSWPTIPQVFING-EFVGGCDILLKL  117 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~-~~~~eL~~~~g~~tvPqvFI~G-~~IGG~del~~l  117 (205)
                      ..||..     ++ +.+.+++-+|++.||+|+.+.|+..  + ....++.+++-..++|.+..|| ..|.....|.+.
T Consensus         4 mkLY~~-----p~-s~s~rvri~L~e~gl~~e~~~vd~~~~~~~~~~~~~~~nP~g~vP~L~~d~~~~l~eS~aI~~Y   75 (211)
T 4gci_A            4 MKLFYK-----PG-ACSLSPHIVLREAGLDFSIERVDLVTKKTETGADYLSINPKGQVPALVLDDGSLLTEGVAIVQY   75 (211)
T ss_dssp             EEEEEC-----TT-STTHHHHHHHHHTTCCEEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEECHHHHHHH
T ss_pred             EEEEeC-----CC-CcHHHHHHHHHHhCCCCeEEEecCCCCcccCCHHHHHhCCCCCCCccccCCCCEEecCHHHHHH
Confidence            346755     32 2357899999999999988776532  2 1123455555566899999877 456555554443

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=83.41  E-value=3  Score=31.74  Aligned_cols=38  Identities=13%  Similarity=0.073  Sum_probs=25.8

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHh---CCCCeEEEEccCCHh
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRM---HDVPYDSHDVLKDES   84 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~---~gV~~~e~DI~~d~~   84 (205)
                      ..|+| |..     +|||+|......|++   .++.+--++++.+++
T Consensus        59 k~vll~F~a-----~~C~~C~~~~~~l~~l~~~~v~vv~vs~~d~~~  100 (176)
T 3kh7_A           59 KPALVNVWG-----TWCPSCRVEHPELTRLAEQGVVIYGINYKDDNA  100 (176)
T ss_dssp             SCEEEEEEC-----TTCHHHHHHHHHHHHHHHTTCEEEEEEESCCHH
T ss_pred             CEEEEEEEC-----CcCHHHHHHHHHHHHHHHCCCEEEEEeCCCCHH
Confidence            34544 555     899999988777643   377777777655543

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=83.36  E-value=1.9  Score=32.22  Aligned_cols=26  Identities=15%  Similarity=-0.105  Sum_probs=17.9

Q ss_pred             CCChHHHHHHHHHHhC-------CCCeEEEEcc
Q psy221           55 PRCGFSNAVVQILRMH-------DVPYDSHDVL   80 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~-------gV~~~e~DI~   80 (205)
                      .|||.|......|.++       ++.+-.++++
T Consensus        40 ~~C~~C~~~~~~l~~~~~~~~~~~v~vv~vs~d   72 (161)
T 3drn_A           40 DDTPGSTREASAFRDNWDLLKDYDVVVIGVSSD   72 (161)
T ss_dssp             TTCHHHHHHHHHHHHTHHHHHTTCEEEEEEESC
T ss_pred             CCCCchHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence            8999998877666543       4555555554

>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A

Probab=81.50  E-value=5.5  Score=32.00  Aligned_cols=53  Identities=11%  Similarity=0.061  Sum_probs=37.4

Q ss_pred             HHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHH
Q psy221           36 DEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKE   91 (205)
Q Consensus        36 ~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~   91 (205)
                      ++.....+|.|.+.|.   +.=|.++++...|+.+||+|+..=++-|  ++...++.+
T Consensus        16 ~~~~~~~~V~IimGS~---SD~~v~~~a~~~L~~~Gi~~dv~V~SaHR~p~~l~~~~~   70 (182)
T 1u11_A           16 DKAASAPVVGIIMGSQ---SDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYAR   70 (182)
T ss_dssp             ----CCCSEEEEESSG---GGHHHHHHHHHHHHHTTCCEEEEECCTTTCHHHHHHHHH
T ss_pred             hhhcCCCEEEEEECcH---HHHHHHHHHHHHHHHcCCCeEEEEEcccCCHHHHHHHHH
Confidence            3444467888888765   5668899999999999999988888777  344444443

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=81.43  E-value=2.5  Score=38.81  Aligned_cols=55  Identities=16%  Similarity=0.221  Sum_probs=37.8

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC---------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH---------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~---------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      ..|+| |..     +||++|++....|++.         ++.+..+|++.+.  ..++.+..+-..+|.+++
T Consensus        31 k~vlV~FyA-----~WC~pCk~~~P~l~~la~~~~~~~~~v~~~~VD~d~d~--~~~l~~~~~V~~~PTl~~   95 (519)
T 3t58_A           31 SAWAVEFFA-----SWCGHAIAFAPTWKELANDVKDWRPALNLAVLDCAEET--NSAVCREFNIAGFPTVRF   95 (519)
T ss_dssp             SEEEEEEEC-----TTSHHHHHHHHHHHHHHHHHGGGTTTEEEEEEETTSGG--GHHHHHHTTCCSBSEEEE
T ss_pred             CeEEEEEEC-----CCCHHHHHHHHHHHHHHHHhhCcCCcEEEEEEECCccc--cHHHHHHcCCcccCEEEE
Confidence            34444 666     9999999998887542         3567777775432  245666678889999854

>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=81.03  E-value=2.6  Score=33.98  Aligned_cols=81  Identities=11%  Similarity=0.120  Sum_probs=51.8

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ..+|++-.+.....++=.+-..+++.|+.+|++++..+|..+  ++..+.|.+      .-.|++.|   |....+.+..
T Consensus        27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~------ad~I~l~G---G~~~~l~~~L   97 (206)
T 3l4e_A           27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK------NDFIYVTG---GNTFFLLQEL   97 (206)
T ss_dssp             TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH------SSEEEECC---SCHHHHHHHH
T ss_pred             CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh------CCEEEECC---CCHHHHHHHH
Confidence            355655543222113345778999999999998877776553  233455554      35688877   7777776666


Q ss_pred             hcccHHHHHhhc
Q psy221          119 QSGELVEQLEKG  130 (205)
Q Consensus       119 e~GeL~~~L~~~  130 (205)
                      ..-.|.+.|++.
T Consensus        98 ~~~gl~~~l~~~  109 (206)
T 3l4e_A           98 KRTGADKLILEE  109 (206)
T ss_dssp             HHHTHHHHHHHH
T ss_pred             HHCChHHHHHHH
Confidence            666677777664

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=80.77  E-value=5  Score=30.76  Aligned_cols=34  Identities=9%  Similarity=0.228  Sum_probs=21.9

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHH-------hCCCCeEEEEcc
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILR-------MHDVPYDSHDVL   80 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~-------~~gV~~~e~DI~   80 (205)
                      ..|+| |..     .|||.|......|.       ..++.+-.++++
T Consensus        49 k~vll~F~a-----twC~~C~~~~~~l~~l~~~~~~~~v~vv~vs~d   90 (190)
T 2vup_A           49 SPLLIYNVA-----SKCGYTKGGYETATTLYNKYKSQGFTVLAFPCN   90 (190)
T ss_dssp             SCEEEEEEC-----SSSTTHHHHHHHHHHHHHHHGGGTCEEEEEECC
T ss_pred             CEEEEEEec-----CCCCccHHHHHHHHHHHHHHhcCCeEEEEEEcC
Confidence            44555 555     89999966555443       346777777775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	205
d1wika_	109	c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (M	3e-35
d1ktea_	105	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-21
d1fova_	82	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	2e-21
d1t1va_	93	c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [Tax	1e-17
d1nm3a1	74	c.47.1.1 (A:166-239) C-terminal, Grx domain of Hyb	6e-16
d1egoa_	85	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	3e-14
d1abaa_	87	c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase)	4e-14
d1h75a_	76	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Esch	2e-12
d1r7ha_	74	c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Cory	1e-11

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 109

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  118 bits (297), Expect = 3e-35
 Identities = 37/100 (37%), Positives = 65/100 (65%)

Query: 30  DVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGI 89
                +  +  K+ V++FMKG  +  +CGFS  +++IL    V Y++ D+L+DE +R G+
Sbjct: 3   SGSSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGL 62

Query: 90  KEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
           K +++WPT PQ+++ G+ VGG DI+ +L  +GEL+  L+ 
Sbjct: 63  KTFSNWPTYPQLYVRGDLVGGLDIVKELKDNGELLPILKG 102

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]} Length = 105

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 82.8 bits (204), Expect = 2e-21
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 11/104 (10%)

Query: 32  QKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILR-----MHDVPYDSHDVLKDESIR 86
           Q  ++  ++  KVVVF+K     P C F     ++L         + +       D +  
Sbjct: 2   QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEI 56

Query: 87  NG-IKEYTSWPTIPQVFINGEFVGGCDILLKLHQSGELVEQLEK 129
              +++ T   T+P+VFI  E +GGC  L  +H+ GEL+ +L++
Sbjct: 57  QDYLQQLTGARTVPRVFIGKECIGGCTDLESMHKRGELLTRLQQ 100

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]} Length = 82

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

 Score = 81.9 bits (202), Expect = 2e-21
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 5/87 (5%)

Query: 42  SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV 101
           + V ++ K       C + +    +L    V +    +  + + R  + + +   T+PQ+
Sbjct: 1   ANVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQI 55

Query: 102 FINGEFVGGCDILLKLHQSGELVEQLE 128
           FI+ + +GG D L  L   G L   L+
Sbjct: 56  FIDAQHIGGYDDLYALDARGGLDPLLK 82

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 93

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.6 bits (178), Expect = 1e-17
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 9/92 (9%)

Query: 42  SKVVVF---MKGVPE-APRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWP- 96
           S + V+   + G  E   +    + V +IL    + Y   D+ +D ++R+ ++     P 
Sbjct: 2   SGLRVYSTSVTGSREIKSQQ---SEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPK 58

Query: 97  -TIPQVFINGEFVGGCDILLKLHQSGELVEQL 127
            T PQ+     + G  ++ ++  +   L E L
Sbjct: 59  ATPPQIVNGNHYCGDYELFVEAVEQDTLQEFL 90

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

 Score = 67.3 bits (164), Expect = 6e-16
 Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 41  KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQ 100
           +  + +F K     P C F     Q+L    + ++   +  D +    ++  +   T+PQ
Sbjct: 4   QESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSGRTTVPQ 57

Query: 101 VFINGEFVGGCDILLK 116
           VFI G+ +GG D L K
Sbjct: 58  VFIGGKHIGGSDDLEK 73

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

 Score = 63.1 bits (153), Expect = 3e-14
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 12/84 (14%)

Query: 43  KVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWP- 96
           + V+F +       C +      +         D  Y   D+  +   +  +++    P 
Sbjct: 2   QTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPV 56

Query: 97  -TIPQVFINGEFVGGCDILLKLHQ 119
            T+PQ+F++ + +GG        +
Sbjct: 57  ETVPQIFVDQQHIGGYTDFAAWVK 80

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]} Length = 87

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

 Score = 63.2 bits (153), Expect = 4e-14
 Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 11/80 (13%)

Query: 51  VPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIK----------EYTSWPTIPQ 100
                +CG  +   ++L +   P++  +++ ++ + +  K          +     T+PQ
Sbjct: 8   DSNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQ 67

Query: 101 VFI-NGEFVGGCDILLKLHQ 119
           VF  +G  +GG D L +  +
Sbjct: 68  VFAPDGSHIGGFDQLREYFK 87

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]} Length = 76

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

 Score = 58.2 bits (140), Expect = 2e-12
 Identities = 9/80 (11%), Positives = 29/80 (36%), Gaps = 8/80 (10%)

Query: 43  KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102
           ++ ++ +       C   +A  + +      ++  +V +       ++    +  +P V 
Sbjct: 2   RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALR-AQGFRQLPVVI 55

Query: 103 INGEFVGGC--DILLKLHQS 120
                  G   D++ +LH +
Sbjct: 56  AGDLSWSGFRPDMINRLHPA 75

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 74

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

 Score = 56.2 bits (135), Expect = 1e-11
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 8/78 (10%)

Query: 43  KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF 102
            + ++ K     P C    A  + L    + Y++ D+  D+  R+ +     +   P V 
Sbjct: 2   SITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMALG-YVQAPVVE 55

Query: 103 INGEFVGG--CDILLKLH 118
           ++GE   G   + + +L 
Sbjct: 56  VDGEHWSGFRPERIKQLQ 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	205
d1wika_	109	Thioredoxin-like protein 2 {Mouse (Mus musculus) [	99.96
d1ktea_	105	Glutaredoxin (Grx, thioltransferase) {Pig (Sus scr	99.93
d1fova_	82	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.93
d1t1va_	93	SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d1nm3a1	74	C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus	99.82
d1r7ha_	74	Glutaredoxin-like NRDH-redoxin {Corynebacterium am	99.79
d1egoa_	85	Glutaredoxin (Grx, thioltransferase) {Escherichia	99.78
d1h75a_	76	Glutaredoxin-like NRDH-redoxin {Escherichia coli [	99.77
d1abaa_	87	Glutaredoxin (Grx, thioltransferase) {Bacteriophag	99.71
d1wjka_	100	Thioredoxin-like structure containing protein C330	99.15
d1ttza_	75	Hypothetical protein XCC2852 {Xanthomonas campestr	98.98
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	98.94
d1g7oa2	75	Glutaredoxin 2 {Escherichia coli [TaxId: 562]}	98.75
d1gwca2	83	Class tau GST {Aegilops tauschii, also known as Tr	98.4
d1oyja2	84	Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}	98.39
d1e6ba2	80	Class zeta GST {Mouse-ear cress (Arabidopsis thali	98.32
d1z9ha2	113	Microsomal prostaglandin E synthase-2 {Crab-eating	98.29
d1k0ma2	86	Chloride intracellular channel 1 (clic1) {Human (H	98.29
d1eema2	98	Class omega GST {Human (Homo sapiens) [TaxId: 9606	98.28
d1v2aa2	83	Class delta GST {Mosquito (Anopheles dirus b), iso	98.27
d1aw9a2	81	Class phi GST {Maize (Zea mays), type III [TaxId:	98.15
d1k0da2	92	Yeast prion protein ure2p, nitrogen regulation fra	98.12
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	98.03
d1fw1a2	83	Class zeta GST {Human (Homo sapiens) [TaxId: 9606]	98.0
d1r5aa2	85	Class delta GST {Mosquito (Anopheles dirus b), iso	97.99
d1axda2	80	Class phi GST {Maize (Zea mays), type I [TaxId: 45	97.98
d1ljra2	79	Class theta GST {Human (Homo sapiens) [TaxId: 9606	97.93
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	97.91
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	97.82
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	97.79
d1gnwa2	84	Class phi GST {Mouse-ear cress (Arabidopsis thalia	97.77
d1jlva2	84	Class delta GST {Mosquito (Anopheles dirus b), iso	97.73
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.65
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	97.6
d1z3ea1	114	Regulatory protein Spx {Bacillus subtilis [TaxId:	97.58
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	97.56
d1rw1a_	114	Hypothetical protein PA3664 (YffB) {Pseudomonas ae	97.49
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	97.4
d2a2ra2	77	Class pi GST {Human (Homo sapiens) [TaxId: 9606]}	97.36
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	97.35
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	97.34
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	97.23
d1woua_	119	Putative 42-9-9 protein (thioredoxin containing pr	97.22
d2cvda2	74	Class sigma GST {Human (Homo sapiens) [TaxId: 9606	97.1
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	97.02
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	97.0
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	96.97
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	96.93
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	96.91
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	96.76
d1j9ba_	138	Arsenate reductase ArsC {Escherichia coli [TaxId:	96.74
d1eeja1	156	Disulfide bond isomerase, DsbC, C-terminal domain	96.66
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	96.48
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	96.47
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	96.29
d1t3ba1	150	Disulfide bond isomerase, DsbC, C-terminal domain	96.28
d2gsqa2	75	Class sigma GST {Squid (Ommastrephes sloani pacifi	96.26
d1iloa_	77	MTH985, a thioredoxin {Archaeon Methanobacterium t	96.13
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	96.08
d1z6na1	166	Hypothetical protein PA1234 {Pseudomonas aeruginos	95.91
d1m0ua2	76	Class sigma GST {Fruit fly (Drosophila melanogaste	95.84
d1gula2	77	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	95.83
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	95.74
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	95.34
d1b48a2	78	Class alpha GST {Mouse (Mus musculus), (a1-4) [Tax	95.31
d1tu7a2	77	Class pi GST {Onchocerca volvulus [TaxId: 6282]}	95.23
d1okta2	85	Pf GST {Malarial parasite (Plasmodium falciparum)	95.19
d2trcp_	217	Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}	95.02
d1tw9a2	77	Class sigma GST {Heligmosomoides polygyrus [TaxId:	94.69
d1n2aa2	80	Class beta GST {Escherichia coli [TaxId: 562]}	94.53
d2c4ja2	84	Class mu GST {Human (Homo sapiens) [TaxId: 9606]}	94.32
d1k3ya2	79	Class alpha GST {Human (Homo sapiens), (a1-1) [Tax	94.11
d1z6ma1	172	Hypothetical protein EF0770 {Enterococcus faecalis	93.53
d1pmta2	80	Class beta GST {Proteus mirabilis [TaxId: 584]}	93.3
d1beda_	181	Disulfide-bond formation facilitator (DsbA) {Vibri	93.24
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	93.14
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	93.02
d1f2ea2	80	Class beta GST {Sphingomonas paucimobilis [TaxId:	92.72
d1v58a1	169	Thiol:disulfide interchange protein DsbG, C-termin	92.6
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	92.58
d1nhya2	75	GST-like domain of elongation factor 1-gamma {Bake	92.41
d1duga2	80	Class alpha GST {Schistosoma japonicum [TaxId: 618	92.04
d1a8la1	119	Protein disulfide isomerase, PDI {Archaeon Pyrococ	92.04
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	91.59
d2b5ea1	140	Protein disulfide isomerase, PDI {Baker's yeast (S	91.08
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	90.63
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	89.71
d1xg8a_	111	Hypothetical protein SA0798 {Staphylococcus aureus	88.4
d1fvka_	188	Disulfide-bond formation facilitator (DsbA) {Esche	87.15
d1fhea2	80	Class alpha GST {Fasciola hepatica [TaxId: 6192]}	86.51
d2fnoa2	87	Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobac	86.06
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	85.45
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	85.38
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	85.22
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	84.59
d1sena_	135	Thioredoxin-like protein p19, TLP19 {Human (Homo s	83.79
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	83.47
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	83.42
d1un2a_	195	Disulfide-bond formation facilitator (DsbA) {Esche	81.08

>d1wika_ c.47.1.1 (A:) Thioredoxin-like protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.7e-29  Score=189.78  Aligned_cols=103  Identities=36%  Similarity=0.803  Sum_probs=98.2

Q ss_pred             HHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeech
Q psy221           32 QKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGC  111 (205)
Q Consensus        32 ~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~  111 (205)
                      +.++++++++++||||++++|..|.||||.+|+++|++++++|+++||+.+++.+++|.+.++++|+|||||+|++|||+
T Consensus         5 ~~~i~~~i~~~~VvvF~Kgt~~~p~Cp~c~~ak~lL~~~~i~~~~~~v~~~~~~~~~l~~~t~~~TvPqIFi~g~~IGG~   84 (109)
T d1wika_           5 SSGLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSNWPTYPQLYVRGDLVGGL   84 (109)
T ss_dssp             CCCHHHHHTTSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHSCCSSCEEECSSSEEECH
T ss_pred             HHHHHHHHhcCCEEEEeCCCCCCCCChHHHHHHHHHHhcCCCceEEEecccHHHHHHHHHhcCCCCCCeEEECCEEEcCH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhcccHHHHHhhcCCcc
Q psy221          112 DILLKLHQSGELVEQLEKGDQKR  134 (205)
Q Consensus       112 del~~l~e~GeL~~~L~~~~~~~  134 (205)
                      ||+++|+++|+|.++|++.+++.
T Consensus        85 ddl~~l~~~G~L~~lL~~~~~~~  107 (109)
T d1wika_          85 DIVKELKDNGELLPILKGESGPS  107 (109)
T ss_dssp             HHHHHHHHHTCSHHHHHTCCSCS
T ss_pred             HHHHHHHHCCCHHHHHHhcCCCC
Confidence            99999999999999999887643

>d1ktea_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.93  E-value=1.1e-25  Score=167.17  Aligned_cols=97  Identities=30%  Similarity=0.549  Sum_probs=86.5

Q ss_pred             HHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCC-----eEEEEccCCH-hHHHHHHHHhCCCCccEEeeCC
Q psy221           32 QKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVP-----YDSHDVLKDE-SIRNGIKEYTSWPTIPQVFING  105 (205)
Q Consensus        32 ~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~-----~~e~DI~~d~-~~~~eL~~~~g~~tvPqvFI~G  105 (205)
                      ++.+++.+++++||||++     ++||||.+||++|++++++     ++++|+..|+ +.++.+.+.+|++|+|||||||
T Consensus         2 ~~~v~~~i~~~~Vviysk-----~~Cp~C~~ak~ll~~~~~~~~~~~~~e~d~~~d~~~~~~~l~~~~g~~tvPqIfi~g   76 (105)
T d1ktea_           2 QAFVNSKIQPGKVVVFIK-----PTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVFIGK   76 (105)
T ss_dssp             HHHHHHHCCTTCEEEEEC-----SSCHHHHHHHHHHHHSCBCTTSEEEEEGGGSTTHHHHHHHHHHHHSCCCSCEEEETT
T ss_pred             hhHHHHHhccCCEEEEEC-----CCCchHHHHHHHHHHhCCccceeeeeecccccccHHHHHHHhhccCCCcCcEEEECC
Confidence            567899999999999999     9999999999999999987     4555666664 5666788889999999999999


Q ss_pred             eEeechhHHHHHHhcccHHHHHhhcCCc
Q psy221          106 EFVGGCDILLKLHQSGELVEQLEKGDQK  133 (205)
Q Consensus       106 ~~IGG~del~~l~e~GeL~~~L~~~~~~  133 (205)
                      ++|||++|+.+|+++|+|.++|+++|+.
T Consensus        77 ~~IGG~~el~~l~~~G~L~~~L~~~Ga~  104 (105)
T d1ktea_          77 ECIGGCTDLESMHKRGELLTRLQQVGAV  104 (105)
T ss_dssp             EEEESHHHHHHHHHHTHHHHHHHHHTCB
T ss_pred             EEEecHHHHHHHHHCCCHHHHHHHcCCC
Confidence            9999999999999999999999988763

>d1fova_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli, Grx3 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli, Grx3 [TaxId: 562]

Probab=99.93  E-value=8.5e-26  Score=160.25  Aligned_cols=82  Identities=23%  Similarity=0.462  Sum_probs=79.4

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHhcc
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQSG  121 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e~G  121 (205)
                      +.|+||++     ++||+|.+||++|+++||+|+++||+.+++.++++.+.+|++++|||||||++|||++|+.+|+++|
T Consensus         1 a~I~iys~-----~~Cp~C~~ak~~L~~~~i~y~~~di~~~~~~~~~~~~~~g~~tvP~i~i~~~~IGG~~el~~l~~~g   75 (82)
T d1fova_           1 ANVEIYTK-----ETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEMIKRSGRTTVPQIFIDAQHIGGYDDLYALDARG   75 (82)
T ss_dssp             CCEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEECTTCSHHHHHHHHHHSSCCSCEEEETTEEEESHHHHHHHHHTT
T ss_pred             CcEEEEeC-----CCCHhHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHhCCCCCCeEEECCEEEecHHHHHHHHHcC
Confidence            35999999     9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHh
Q psy221          122 ELVEQLE  128 (205)
Q Consensus       122 eL~~~L~  128 (205)
                      +|.++|+
T Consensus        76 ~L~~lLk   82 (82)
T d1fova_          76 GLDPLLK   82 (82)
T ss_dssp             CSHHHHC
T ss_pred             CHHHHhC
Confidence            9999985

>d1t1va_ c.47.1.14 (A:) SH3BGRL3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: SH3BGR (SH3-binding, glutamic acid-rich protein-like)
domain: SH3BGRL3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=1.2e-21  Score=142.13  Aligned_cols=84  Identities=19%  Similarity=0.338  Sum_probs=78.3

Q ss_pred             CCcEEEEEeeCCCCCCC------hHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCC--CCccEEeeCCeEeechh
Q psy221           41 KSKVVVFMKGVPEAPRC------GFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSW--PTIPQVFINGEFVGGCD  112 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~C------p~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~--~tvPqvFI~G~~IGG~d  112 (205)
                      +..|+||++     ++|      ++|.+++.+|++++|+|+++||+.|++.++++.+++|.  +++|||||||+||||+|
T Consensus         1 m~~i~vy~t-----s~~~~~~~~~~~~r~~~lL~~~~I~y~~iDi~~d~~~~~~~~~~~g~~~~t~Pqifv~~~~iGg~d   75 (93)
T d1t1va_           1 MSGLRVYST-----SVTGSREIKSQQSEVTRILDGKRIQYQLVDISQDNALRDEMRTLAGNPKATPPQIVNGNHYCGDYE   75 (93)
T ss_dssp             CCCEEEEEC-----SSCSCHHHHHHHHHHHHHHHHTTCCCEEEETTSCHHHHHHHHHHTTCTTCCSCEEEETTEEEEEHH
T ss_pred             CCCEEEEEc-----cCcCChhhHHHHHHHHHHHHHCCCceEEEEecCchhHHHHHHHhccCCCceeEEEEECCEEEecHH
Confidence            357999999     677      69999999999999999999999999999999999864  69999999999999999


Q ss_pred             HHHHHHhcccHHHHHhh
Q psy221          113 ILLKLHQSGELVEQLEK  129 (205)
Q Consensus       113 el~~l~e~GeL~~~L~~  129 (205)
                      ++.+++++|+|.++|+.
T Consensus        76 el~~~~e~g~L~~~lk~   92 (93)
T d1t1va_          76 LFVEAVEQDTLQEFLKL   92 (93)
T ss_dssp             HHHHHHHTTCHHHHTTC
T ss_pred             HHHHHHHCCCHHHHhcc
Confidence            99999999999999975

>d1nm3a1 c.47.1.1 (A:166-239) C-terminal, Grx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: C-terminal, Grx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.82  E-value=1.4e-20  Score=130.59  Aligned_cols=70  Identities=29%  Similarity=0.549  Sum_probs=64.3

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~  116 (205)
                      +.+|+||++     ++||+|.+|+++|+++||+|+++||+.++. ++++.+.+|++++|||||||++|||++|+.+
T Consensus         4 ~~~I~iYs~-----~~C~~C~~ak~lL~~~~i~~~~~~v~~~~~-~~~~~~~~~~~tvP~i~i~g~~IGG~~el~~   73 (74)
T d1nm3a1           4 QESISIFTK-----PGCPFCAKAKQLLHDKGLSFEEIILGHDAT-IVSVRAVSGRTTVPQVFIGGKHIGGSDDLEK   73 (74)
T ss_dssp             CCCEEEEEC-----SSCHHHHHHHHHHHHHTCCCEEEETTTTCC-HHHHHHHTCCSSSCEEEETTEEEESHHHHHH
T ss_pred             cCcEEEEEC-----CCCHHHHHHHHHHHHcCCCeEEEEccCcHH-HHHHHHHhCCccCCEEEECCEEEEChHHHhh
Confidence            467999999     999999999999999999999999998876 4677778899999999999999999999875

>d1r7ha_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Corynebacterium ammoniagenes [TaxId: 1697]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Corynebacterium ammoniagenes [TaxId: 1697]

Probab=99.79  E-value=3.2e-19  Score=123.41  Aligned_cols=69  Identities=22%  Similarity=0.413  Sum_probs=62.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechh--HHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCD--ILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~d--el~~l  117 (205)
                      +|+||++     ++||+|.+++++|+++||+|+++||+.+++.+++++.. |.+++|+|||||++|||++  ++.+|
T Consensus         2 ~v~iYt~-----~~C~~C~~ak~~L~~~~i~~~~~~i~~~~~~~~~~~~~-g~~tvP~i~i~g~~igGf~~d~l~~L   72 (74)
T d1r7ha_           2 SITLYTK-----PACVQCTATKKALDRAGLAYNTVDISLDDEARDYVMAL-GYVQAPVVEVDGEHWSGFRPERIKQL   72 (74)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHHT-TCBCCCEEEETTEEEESCCHHHHHHH
T ss_pred             EEEEEeC-----CCChhHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHh-CCCCcCEEEECCEEEeCCCHhHHHHh
Confidence            6999999     99999999999999999999999999999998888764 8899999999999999985  44443

>d1egoa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=4.7e-20  Score=131.22  Aligned_cols=74  Identities=15%  Similarity=0.363  Sum_probs=66.0

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCC-----CCeEEEEccCCHhHHHHHHHHhCC--CCccEEeeCCeEeechhHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHD-----VPYDSHDVLKDESIRNGIKEYTSW--PTIPQVFINGEFVGGCDIL  114 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~g-----V~~~e~DI~~d~~~~~eL~~~~g~--~tvPqvFI~G~~IGG~del  114 (205)
                      .+||||++     ++||+|.+||++|+++|     ++|+++|++.+++.++++.+..+.  +|+|||||||++|||++|+
T Consensus         1 Mkvviysk-----~~Cp~C~~aK~ll~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~tvPqIfi~g~~IGG~~el   75 (85)
T d1egoa_           1 MQTVIFGR-----SGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVETVPQIFVDQQHIGGYTDF   75 (85)
T ss_dssp             CEEEEECC-----TTSTHHHHHHHHHHHHHHHHSSCEEEEECHHHHTCCSHHHHHHTCCCSCCSCEEEETTEEEESSHHH
T ss_pred             CEEEEEeC-----CCCHhHHHHHHHHHHcCCCCCCceEEEEecCCCHHHHHHHHHHhcCCCCCCCEEEECCEEEECHHHH
Confidence            37999999     99999999999999865     678899998888888999988754  6899999999999999999


Q ss_pred             HHHHhc
Q psy221          115 LKLHQS  120 (205)
Q Consensus       115 ~~l~e~  120 (205)
                      .++.++
T Consensus        76 ~~~~~~   81 (85)
T d1egoa_          76 AAWVKE   81 (85)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            998764

>d1h75a_ c.47.1.1 (A:) Glutaredoxin-like NRDH-redoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin-like NRDH-redoxin
species: Escherichia coli [TaxId: 562]

Probab=99.77  E-value=6.4e-19  Score=122.75  Aligned_cols=71  Identities=13%  Similarity=0.324  Sum_probs=64.3

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeech--hHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGC--DILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~--del~~l~e  119 (205)
                      +|+||++     ++||+|.+++++|+++||+|+++||+.+++.+++++. .|.+++|+|+|||++|||+  |.+.+|++
T Consensus         2 ki~iYs~-----~~C~~C~~ak~~L~~~~i~y~~~~i~~~~~~~~~~~~-~g~~tvP~i~i~~~~i~Gf~~d~i~~L~~   74 (76)
T d1h75a_           2 RITIYTR-----NDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALRA-QGFRQLPVVIAGDLSWSGFRPDMINRLHP   74 (76)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEETTTCHHHHHHHHH-TTCCSSCEEEETTEEEESCCHHHHGGGSC
T ss_pred             EEEEEeC-----CCCccHHHHHHHHHhcCceeEEEeecCCHHHHHHHHh-cCCCCCCEEEECCEEEECCCHHHHHHHhc
Confidence            5999999     9999999999999999999999999999999888866 5899999999999999997  56666543

>d1abaa_ c.47.1.1 (A:) Glutaredoxin (Grx, thioltransferase) {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Glutaredoxin (Grx, thioltransferase)
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.71  E-value=2.2e-17  Score=118.10  Aligned_cols=74  Identities=20%  Similarity=0.410  Sum_probs=58.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC-----HhHHHHHHHH-----hCCCCccEEee-CCeEeechh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD-----ESIRNGIKEY-----TSWPTIPQVFI-NGEFVGGCD  112 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d-----~~~~~eL~~~-----~g~~tvPqvFI-~G~~IGG~d  112 (205)
                      +.||+++ +..+.||||.+||++|+++|++|++++++.+     ...++++.+.     ++++|+||||| ||++|||++
T Consensus         2 ~~Iy~~~-~~~~~C~~C~~AK~lL~~~~i~y~~~~i~~~~~~~~~~~~~e~~~~~~~~~~~~~TvPqIfi~dg~~IGG~d   80 (87)
T d1abaa_           2 FKVYGYD-SNIHKCGPCDNAKRLLTVKKQPFEFINIMPEKGVFDDEKIAELLTKLGRDTQIGLTMPQVFAPDGSHIGGFD   80 (87)
T ss_dssp             EEEEECC-TTTSCCHHHHHHHHHHHHTTCCEEEEESCSBTTBCCHHHHHHHHHHHTCSCCTTCCSCEEECTTSCEEESHH
T ss_pred             EEEEEeC-CCCCCChhHHHHHHHHHHcCCCceeccccccccccCHHHHHHHHHHhcccCCCCceeCeEEecCCcEEECHH
Confidence            4688872 1124699999999999999999999998753     4455566554     36789999999 699999999


Q ss_pred             HHHHHH
Q psy221          113 ILLKLH  118 (205)
Q Consensus       113 el~~l~  118 (205)
                      |++++.
T Consensus        81 el~e~~   86 (87)
T d1abaa_          81 QLREYF   86 (87)
T ss_dssp             HHHHHT
T ss_pred             HHHHHh
Confidence            998875

>d1wjka_ c.47.1.1 (A:) Thioredoxin-like structure containing protein C330018D20Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like structure containing protein C330018D20Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=3.2e-11  Score=87.33  Aligned_cols=78  Identities=19%  Similarity=0.279  Sum_probs=64.3

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe--echhHHHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV--GGCDILLKLH  118 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I--GG~del~~l~  118 (205)
                      +..|++|++     +||++|+.++.+|+++..+|..+++..|.+..++|.+.++.. +|+|+|||+.+  |.++      
T Consensus        16 ~p~i~lft~-----~~C~~C~~a~~~L~~~~~~~~~~~v~vd~~~~~~l~~~y~~~-VPvl~idg~~~~~g~~d------   83 (100)
T d1wjka_          16 LPVLTLFTK-----APCPLCDEAKEVLQPYKDRFILQEVDITLPENSTWYERYKFD-IPVFHLNGQFLMMHRVN------   83 (100)
T ss_dssp             CCEEEEEEC-----SSCHHHHHHHHHTSTTSSSSEEEEEETTSSTTHHHHHHSSSS-CSEEEESSSEEEESSCC------
T ss_pred             CCEEEEEEC-----CCCCChHHHHHHHHHhhhhcceEEEecccccCHHHHHHhccc-CCceeecCceEEeCCCC------
Confidence            567999999     999999999999999999998888877766678899888876 99999999763  4454      


Q ss_pred             hcccHHHHHhhcC
Q psy221          119 QSGELVEQLEKGD  131 (205)
Q Consensus       119 e~GeL~~~L~~~~  131 (205)
                       ..+|++.|++..
T Consensus        84 -~~~L~~~L~~l~   95 (100)
T d1wjka_          84 -TSKLEKQLRKLS   95 (100)
T ss_dssp             -HHHHHHHHHSSS
T ss_pred             -HHHHHHHHHHHh
Confidence             356777887653

>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein XCC2852
species: Xanthomonas campestris [TaxId: 339]

Probab=98.98  E-value=1e-09  Score=75.80  Aligned_cols=71  Identities=13%  Similarity=0.130  Sum_probs=53.0

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHh-CCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeec--hhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRM-HDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGG--CDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~-~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG--~del~~l~e  119 (205)
                      .|+||++     ++|+.|..|+++|.. .+++++++||+.|+++    .+.+|.+ +|+|.++|..+-+  +|       
T Consensus         1 altLyt~-----~~C~LCe~A~~~l~~~~~~~~~~vdI~~d~~l----~~~y~~~-IPVl~~~~~~~l~w~fd-------   63 (75)
T d1ttza_           1 ALTLYQR-----DDCHLCDQAVEALAQARAGAFFSVFIDDDAAL----ESAYGLR-VPVLRDPMGRELDWPFD-------   63 (75)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHTTCCCEEEEECTTCHHH----HHHHTTT-CSEEECTTCCEEESCCC-------
T ss_pred             CEEEECC-----CCccHHHHHHHHHHhccCCcEEEEEccCCHHH----HHHhCCe-eeEEEECCeeEEcCccC-------
Confidence            3799999     999999999998755 6899999999998754    4444544 8999998754433  44       


Q ss_pred             cccHHHHHhhc
Q psy221          120 SGELVEQLEKG  130 (205)
Q Consensus       120 ~GeL~~~L~~~  130 (205)
                      ..+|+++|+.+
T Consensus        64 ~~~l~~~L~~~   74 (75)
T d1ttza_          64 APRLRAWLDAA   74 (75)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHhcC
Confidence            34566666543

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.94  E-value=2e-09  Score=76.72  Aligned_cols=73  Identities=18%  Similarity=0.219  Sum_probs=57.9

Q ss_pred             ChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221           28 STDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVF  102 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF  102 (205)
                      ++++.+.++.+-....+++|+.     +|||+|..++.+|+..     .|.+..+|++.+++    +.+..|-.++|.+|
T Consensus         3 ~~~~~e~ik~l~~~~~i~~F~s-----~~C~~C~~~~p~~~~~a~~~~~i~~~~vd~~~~~~----l~~~~~I~~vPt~~   73 (96)
T d1hyua4           3 AQSLLEQIRDIDGDFEFETYYS-----LSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQN----EITERNVMGVPAVF   73 (96)
T ss_dssp             CHHHHHHHHHCCSCEEEEEEEC-----TTCSSHHHHHHHHHHHHHHCTTEEEEEEETTTCHH----HHHHTTCCSSSEEE
T ss_pred             hHHHHHHHHhcCCCeEEEEEEC-----CCCcchHHHHHHHHHHHHhCCceEEEEEecccchH----HHhhcccccccEEE
Confidence            4566777776666677888999     9999999999999754     46788889888774    44455778999999


Q ss_pred             eCCeEee
Q psy221          103 INGEFVG  109 (205)
Q Consensus       103 I~G~~IG  109 (205)
                      +||+.++
T Consensus        74 ~ng~~~~   80 (96)
T d1hyua4          74 VNGKEFG   80 (96)
T ss_dssp             ETTEEEE
T ss_pred             ECCEEEE
Confidence            9999774

>d1g7oa2 c.47.1.5 (A:1-75) Glutaredoxin 2 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Glutaredoxin 2
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=2.5e-08  Score=68.11  Aligned_cols=68  Identities=10%  Similarity=0.280  Sum_probs=58.1

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHHh
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLHQ  119 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~e  119 (205)
                      -||+.     +.||+|.+|+.+|...|++|+.+++..+.  .+++.++++..+||++.. ||+.+....++.+..+
T Consensus         2 kLY~~-----~~cP~~~rvr~~l~~kgi~~e~~~~~~~~--~~~~~~~~p~~~VP~L~~~dg~~i~eS~~I~~yLd   70 (75)
T d1g7oa2           2 KLYIY-----DHCPYCLKARMIFGLKNIPVELHVLLNDD--AETPTRMVGQKQVPILQKDDSRYMPESMDIVHYVD   70 (75)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTT--THHHHHHHSSSCCCEEEETTTEEEECHHHHHHHHH
T ss_pred             EEEcc-----CCCCchHHHHHHHHHhCCCcccccccccc--hHHHHHhCCCCceEEEEEcCCCEEecHHHHHHHHH
Confidence            37888     99999999999999999999999987654  367778899999999987 6799998888877544

>d1gwca2 c.47.1.5 (A:4-86) Class tau GST {Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Aegilops tauschii, also known as Triticum tauschii [TaxId: 37682]

Probab=98.40  E-value=8e-07  Score=60.82  Aligned_cols=70  Identities=16%  Similarity=0.140  Sum_probs=55.9

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC-CCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS-WPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g-~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .+.||..     ..||+|.+|+.+|..+|++|+.+++.....- +++.+... ...+|.+..||..|.....+.+..
T Consensus         3 ~mkLy~~-----~~sp~~~rvr~~l~~kgi~~e~~~v~~~~~~-~~~~~~~~~~~~~p~l~~dg~~i~eS~~I~~YL   73 (83)
T d1gwca2           3 DLKLLGA-----WPSPFVTRVKLALALKGLSYEDVEEDLYKKS-ELLLKSNPVHKKIPVLIHNGAPVCESMIILQYI   73 (83)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTSCC-HHHHHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             eEEEEec-----CCChHHHHHHHHHHHCCCCeEEEEEeccchh-HHHHHHHhccCCCceeecCCceEcCHHHHHHHH
Confidence            5789988     9999999999999999999999998754322 34444444 457899999999998888877763

>d1oyja2 c.47.1.5 (A:2-85) Class tau GST {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class tau GST
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.39  E-value=8.8e-07  Score=61.49  Aligned_cols=74  Identities=9%  Similarity=0.117  Sum_probs=60.8

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC-CCCccEEeeCCeEeechhHHHHHH
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS-WPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g-~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++..++||..     ..||+|.+++-+|...||+|+.+.++.... .+++.+++. ..++|.+..||..|-....+.+..
T Consensus         2 ~~~~l~Ly~~-----~~Sp~~~rvr~~L~~kgi~~e~~~v~~~~~-~~~~~~~nP~~g~vP~L~~~g~~l~eS~~I~~YL   75 (84)
T d1oyja2           2 EEKELVLLDF-----WVSPFGQRCRIAMAEKGLEFEYREEDLGNK-SDLLLRSNPVHRKIPVLLHAGRPVSESLVILQYL   75 (84)
T ss_dssp             CSCCEEEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTSC-CHHHHHHSTTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCCceEEEcC-----CCChHHHHHHHHHHHcCCCcEEEEEccCcC-CHHHHhhCCCcCcccEEEECCceEEcHHHHHHHH
Confidence            4678999998     899999999999999999999999876432 345666665 478999999999998888777764


Q ss_pred             h
Q psy221          119 Q  119 (205)
Q Consensus       119 e  119 (205)
                      +
T Consensus        76 ~   76 (84)
T d1oyja2          76 D   76 (84)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1e6ba2 c.47.1.5 (A:8-87) Class zeta GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.32  E-value=1.9e-06  Score=58.97  Aligned_cols=72  Identities=13%  Similarity=0.176  Sum_probs=59.6

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      ++.||..     +.||+|.+++-+|+..|++|+.+.|+.  .+...+++.++....++|.+..||..+-....+.+..+
T Consensus         1 ~m~Ly~~-----~~sp~~~kv~~~L~~~gi~~~~~~i~~~~~~~~~~~~~~~~p~~~vPvL~~~~~~l~eS~aI~~yL~   74 (80)
T d1e6ba2           1 KLKLYSY-----WRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDVVINDSFAIIMYLD   74 (80)
T ss_dssp             CCEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCTTTTGGGCHHHHHHCTTCCSSEEEETTEEEESHHHHHHHHH
T ss_pred             CEEEEeC-----CCChHHHHHHHHHHHhCCCCEEEEEeccccccccHHHhhcCccccCCEEEECCEEEECHHHHHHHHH
Confidence            4578988     999999999999999999999888764  34455677778788899999999999888877766543

>d1z9ha2 c.47.1.5 (A:100-212) Microsomal prostaglandin E synthase-2 {Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Microsomal prostaglandin E synthase-2
species: Crab-eating macaque (Macaca fascicularis) [TaxId: 9541]

Probab=98.29  E-value=8e-07  Score=64.70  Aligned_cols=69  Identities=14%  Similarity=0.383  Sum_probs=55.4

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC----CeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN----GEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~----G~~IGG~del~~l~  118 (205)
                      +++||+.     ++||+|.+|+.+|+.+|++|+.++++....  +. ....+..++|++.++    |+.++...++.+..
T Consensus         2 ~i~LY~~-----~~sP~~~kvr~~L~~k~l~~~~~~v~~~~~--~~-~~~~~~~~vP~l~~~~~~~g~~i~eS~~Ii~YL   73 (113)
T d1z9ha2           2 QLTLYQY-----KTCPFCSKVRAFLDFHALPYQVVEVNPVLR--AE-IKFSSYRKVPILVAQEGESSQQLNDSSVIISAL   73 (113)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTC--GG-GTTCSCCSSCEEEEEETTEEEEECSHHHHHHHH
T ss_pred             EEEEEcC-----CCChHHHHHHHHHHHcCCeeEEeccCcccc--hh-hccCccccccccccccCCCceEeecHHHHHHHH
Confidence            5899999     999999999999999999999999875432  22 245678899998753    47899988877654


Q ss_pred             h
Q psy221          119 Q  119 (205)
Q Consensus       119 e  119 (205)
                      +
T Consensus        74 ~   74 (113)
T d1z9ha2          74 K   74 (113)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Chloride intracellular channel 1 (clic1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=2.2e-06  Score=59.70  Aligned_cols=76  Identities=14%  Similarity=0.284  Sum_probs=61.3

Q ss_pred             cEEEEEeeCCC---CCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           43 KVVVFMKGVPE---APRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        43 ~VvlYsk~~~~---~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      .+.+|.+...+   ...||+|++++-+|+..||+|+.+.|+... ..+++++++...++|.+..||..+.....+.+..+
T Consensus         2 ~i~l~~ka~~dg~~~~~cPf~~rv~~~L~~kgi~~~~~~v~~~~-~~~~~~~~nP~~~vPvL~~~~~~i~eS~~I~~YLe   80 (86)
T d1k0ma2           2 QVELFVKAGSDGAKIGNCPFSQRLFMVLWLKGVTFNVTTVDTKR-RTETVQKLCPGGELPFLLYGTEVHTDTNKIEEFLE   80 (86)
T ss_dssp             CEEEEEEBCTTSSSBCSCHHHHHHHHHHHHHTCCCEEEEECTTS-CCHHHHHHCTTCCSSEEEETTEEEECHHHHHHHHH
T ss_pred             cEEEEEecCCCcCcCCCCHhHHHHHHHHHHHCCCcEEEEeeccc-ccHHHHHHhccCceeEEEEcccccccHHHHHHHHH
Confidence            47888775432   157999999999999999999999887542 23578888888899999999999998888777643

>d1eema2 c.47.1.5 (A:5-102) Class omega GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class omega GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=1e-06  Score=62.81  Aligned_cols=74  Identities=8%  Similarity=0.166  Sum_probs=59.7

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHHH
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKLH  118 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l~  118 (205)
                      ....+.||+.     +.||+|.+|+-+|...||+|+.++|+... ..+++.++....++|.+..+ |..|.....+.+..
T Consensus        16 ~~~~~~Ly~~-----~~sP~~~rv~~~l~~kgi~~e~~~v~~~~-~~~~~~~~nP~g~VPvL~~~dg~~i~eS~aI~~YL   89 (98)
T d1eema2          16 PEGSIRIYSM-----RFCPFAERTRLVLKAKGIRHEVININLKN-KPEWFFKKNPFGLVPVLENSQGQLIYESAITCEYL   89 (98)
T ss_dssp             CTTCEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEEBCTTS-CCGGGGGTCTTCCSCEEEETTCCEEESHHHHHHHH
T ss_pred             CCCcEEEEcC-----CCChHHHHHHHHHHHhCCCCEEEEecccC-CcHHHHhhhccccceeEEeCCCCEEcCHHHHHHHH
Confidence            3567999999     99999999999999999999999886532 23456777778899999884 68888877776654


Q ss_pred             h
Q psy221          119 Q  119 (205)
Q Consensus       119 e  119 (205)
                      +
T Consensus        90 ~   90 (98)
T d1eema2          90 D   90 (98)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1v2aa2 c.47.1.5 (A:1-83) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-6 [TaxId: 123217]

Probab=98.27  E-value=3.2e-06  Score=58.09  Aligned_cols=68  Identities=12%  Similarity=0.125  Sum_probs=58.4

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC-CHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK-DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~-d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .+|..     +.||+|++++.+|+.+|++|+.+.|+. ..+.++++.++....++|.+..||..+-....+.+.
T Consensus         2 ~LY~~-----~~Sp~~~~v~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~nP~g~VP~L~~~g~~l~eS~aI~~Y   70 (83)
T d1v2aa2           2 DYYYS-----LISPPCQSAILLAKKLGITLNLKKTNVHDPVERDALTKLNPQHTIPTLVDNGHVVWESYAIVLY   70 (83)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             EEECC-----CCChHHHHHHHHHHHhCCCceEEEEeCCCCcchHHHHHHhhccCCCEEEEccceeEcHHHHHHH
Confidence            47888     999999999999999999999998874 455678888888888999999999988877776664

>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type III [TaxId: 4577]

Probab=98.15  E-value=1.5e-06  Score=59.63  Aligned_cols=71  Identities=10%  Similarity=0.090  Sum_probs=58.4

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++.||..     +.||+|.+++-+|+..||+|+.+.|+..  +...+++.++....++|.+..||..|.....+.+..
T Consensus         2 pm~Ly~~-----~~sp~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~aI~~YL   74 (81)
T d1aw9a2           2 PLKLYGM-----PLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDEVLFESRAINRYI   74 (81)
T ss_dssp             CEEEESC-----TTCHHHHHHHHHHHHTTCCEEEECCCSSTTSSCCCSGGGTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CEEEEeC-----CCChhHHHHHHHHHhcCCCCEEEEecCCCcchhhHHHHHHhhcCeeEEEEECCcEEECHHHHHHHH
Confidence            5889988     9999999999999999999999988643  333456667777789999999999998877776653

>d1k0da2 c.47.1.5 (A:109-200) Yeast prion protein ure2p, nitrogen regulation fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Yeast prion protein ure2p, nitrogen regulation fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=1.1e-05  Score=56.47  Aligned_cols=73  Identities=10%  Similarity=0.004  Sum_probs=59.0

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee---CCeEeechhHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI---NGEFVGGCDILL  115 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI---~G~~IGG~del~  115 (205)
                      +..++||..     +.||+|.+|+-+|+++|++|+.+.|+..  .....++.++....++|.+..   ||..|.....+.
T Consensus         3 ~~~~tLY~~-----~~sp~~~kV~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~~~~l~ES~aI~   77 (92)
T d1k0da2           3 LEGYTLFSH-----RSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHGMDNLSIWESGAIL   77 (92)
T ss_dssp             SSSEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSCEEEEGGGTTEEEESHHHHH
T ss_pred             CCceEEeeC-----CCCccHHHHHHHHHHcCCCCEEEEeeccCCcccCHHHHHHhhccccceeEEecccceEEcCHHHHH
Confidence            356899999     9999999999999999999999988654  333467777878889999986   777777766666


Q ss_pred             HHH
Q psy221          116 KLH  118 (205)
Q Consensus       116 ~l~  118 (205)
                      +..
T Consensus        78 ~YL   80 (92)
T d1k0da2          78 LHL   80 (92)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.03  E-value=1.4e-06  Score=59.88  Aligned_cols=61  Identities=21%  Similarity=0.454  Sum_probs=47.7

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCe--Eeechh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGE--FVGGCD  112 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~--~IGG~d  112 (205)
                      .|++|+.     +||++|++++..|++.      ++.+..+|++++++    +....|-..+|.++++|+  ++|..+
T Consensus         4 ~v~~F~a-----~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~~~~~~~~~G~~~   72 (85)
T d1nhoa_           4 NIEVFTS-----PTCPYCPMAIEVVDEAKKEFGDKIDVEKIDIMVDRE----KAIEYGLMAVPAIAINGVVRFVGAPS   72 (85)
T ss_dssp             CEEEESC-----SSSCCSTTHHHHHHHHHHHHCSSCCEEEECTTTCGG----GGGGTCSSCSSEEEETTTEEEECSSC
T ss_pred             EEEEEEC-----CCCcchHHHHHHHhhhcccccccccccccccccchh----hHHhcCceEeCEEEECCcEEEEcCCC
Confidence            5788999     9999999999888643      37788888887775    345567889999999874  566543

>d1fw1a2 c.47.1.5 (A:5-87) Class zeta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class zeta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=2.2e-05  Score=53.80  Aligned_cols=71  Identities=11%  Similarity=0.179  Sum_probs=58.3

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC----HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHHh
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD----ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLHQ  119 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d----~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~e  119 (205)
                      -|||.-     +.+++|.+++-+|+..|++|+.+.|+..    ....+++.++....++|.+..||..|.....+.+..+
T Consensus         2 piLY~~-----~~S~~s~rvr~~L~ekgi~~e~~~v~l~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~i~eS~aI~~yL~   76 (83)
T d1fw1a2           2 PILYSY-----FRSSCSWRVRIALALKGIDYKTVPINLIKDGGQQFSKDFQALNPMKQVPTLKIDGITIHQSLAIIEYLE   76 (83)
T ss_dssp             CEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCSSTTSCGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHHHH
T ss_pred             CEEEcC-----CCChHHHHHHHHHHHhCCCCEEEeccccccccccCCHHHHHhccCCccCEEEECCEEEecHHHHHHHHH
Confidence            368988     9999999999999999999998877532    2344677788888899999999999988877766543

>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]

Probab=97.99  E-value=2.6e-05  Score=53.66  Aligned_cols=70  Identities=17%  Similarity=0.222  Sum_probs=58.6

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .++||..     +.|++|++++-+|+++|++|+.+.|+.  .....+++.++.-..++|.+..||..|-....+.+.
T Consensus         1 t~iLY~~-----~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~Y   72 (85)
T d1r5aa2           1 TTVLYYL-----PASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDHGLVLWESRVILSY   72 (85)
T ss_dssp             CEEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEECCTTTTGGGSHHHHTTCTTCCSSEEEETTEEEECHHHHHHH
T ss_pred             CEEEEcC-----CCCHhHHHHHHHHHHcCCCCEEEEecCCCcccCCHHHHHHHhcCCCCEEEEcccceecHHHHHHH
Confidence            3789999     999999999999999999999988864  344566888887778999999999888777766654

>d1axda2 c.47.1.5 (A:1-80) Class phi GST {Maize (Zea mays), type I [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Maize (Zea mays), type I [TaxId: 4577]

Probab=97.98  E-value=1.3e-05  Score=54.60  Aligned_cols=72  Identities=7%  Similarity=-0.025  Sum_probs=59.1

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      .++.||..     +.|++|.+++-+|++.|++|+.++|+..  +....++.++....++|.+..||..+.....+.+..
T Consensus         1 ap~~Ly~~-----~~S~~~~kv~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL   74 (80)
T d1axda2           1 APMKLYGA-----VMSWNLTRCATALEEAGSDYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFESRAICKYA   74 (80)
T ss_dssp             CCEEEESC-----TTCTTHHHHHHHHHHHTCCEEEECCCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEESHHHHHHHH
T ss_pred             CCEEEEEC-----CCChHHHHHHHHHHHcCCCCEEEEecCCccchhhHHHHHhhccccCCEEEECCEEEECHHHHHHHH
Confidence            36889999     9999999999999999999999888643  334567777777889999999998887777666653

>d1ljra2 c.47.1.5 (A:1-79) Class theta GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class theta GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=3.2e-05  Score=52.16  Aligned_cols=70  Identities=13%  Similarity=0.106  Sum_probs=58.2

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      +.||..     +.||+|++++-+|+++|++|+.+.|+..  ....+++.++.....+|.+..||..+-....+.+..
T Consensus         3 m~LY~~-----~~sp~~r~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~np~g~vP~L~d~~~~l~ES~aI~~yL   74 (79)
T d1ljra2           3 LELFLD-----LVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDGDFILTESSAILIYL   74 (79)
T ss_dssp             CEEEEC-----TTSHHHHHHHHHHHHTTCCCEEEECCTTTTGGGSHHHHTTCTTCCSCEEEETTEEEECHHHHHHHH
T ss_pred             EEEeeC-----CCChHHHHHHHHHHHhCCCCEEEeeeccccccCCHHHHHhhhhcceeEEEeCCcEEEcHHHHHHHH
Confidence            578988     9999999999999999999999988643  345567888888889999999998887777666553

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.91  E-value=1.3e-05  Score=56.46  Aligned_cols=70  Identities=17%  Similarity=0.392  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC----------CCCeEEEEccCCHhHHHHHHHHhCCCCc
Q psy221           29 TDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH----------DVPYDSHDVLKDESIRNGIKEYTSWPTI   98 (205)
Q Consensus        29 ~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~----------gV~~~e~DI~~d~~~~~eL~~~~g~~tv   98 (205)
                      ++..+.+.++-+.-.|++|+.     +||++|++++..|.++          .|.+..+|++++++    +.+..+-..+
T Consensus         4 ~~~~e~~~~~~~~v~i~~F~a-----~wC~~C~~~~p~~~~la~~~~~~~~~~v~~~~id~~~~~~----l~~~~~V~~v   74 (107)
T d1a8la2           4 DETKQAIRNIDQDVRILVFVT-----PTCPYCPLAVRMAHKFAIENTKAGKGKILGDMVEAIEYPE----WADQYNVMAV   74 (107)
T ss_dssp             HHHHHHHTTCCSCEEEEEEEC-----SSCTTHHHHHHHHHHHHHHHHHTTCCCEEEEEEEGGGCHH----HHHHTTCCSS
T ss_pred             HHHHHHHHhcCCCeEEEEEEc-----CccccchhhChhHHhhhhhhhhccCCcEEEEEeccccccc----cccccccccc
Confidence            344444444222223445888     9999999999888653          35677788877764    4555677788


Q ss_pred             cEEee--CCeE
Q psy221           99 PQVFI--NGEF  107 (205)
Q Consensus        99 PqvFI--~G~~  107 (205)
                      |.+++  +|+.
T Consensus        75 PTi~i~~~G~~   85 (107)
T d1a8la2          75 PKIVIQVNGED   85 (107)
T ss_dssp             CEEEEEETTEE
T ss_pred             eEEEEEeCCeE
Confidence            88765  5643

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.82  E-value=2.6e-05  Score=56.23  Aligned_cols=67  Identities=13%  Similarity=0.255  Sum_probs=47.3

Q ss_pred             HHHHHHhcCCc-EEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--ee
Q psy221           33 KSIDEMVKKSK-VVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FI  103 (205)
Q Consensus        33 ~~l~~~~~~~~-Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI  103 (205)
                      +.++++++.++ |+| |..     +||+.|+.++..|+++     +|.|-.+|++++++    +.+..|-..+|.+  |-
T Consensus        17 ~~~~~~~~~~~~vvv~F~a-----~wC~~C~~~~p~l~~l~~~~~~v~~~~vd~d~~~~----l~~~~~V~~~Pt~~~~~   87 (113)
T d1r26a_          17 EQFRNIMSEDILTVAWFTA-----VWCGPCKTIERPMEKIAYEFPTVKFAKVDADNNSE----IVSKCRVLQLPTFIIAR   87 (113)
T ss_dssp             HHHHHHHHSSSCEEEEEEC-----TTCHHHHHTHHHHHHHHHHCTTSEEEEEETTTCHH----HHHHTTCCSSSEEEEEE
T ss_pred             HHHHHHHcCCCeEEEEEEC-----CCCccchhhceeccccccccccccccccccccchh----hHHHccccCCCEEEEEE
Confidence            33556665553 444 666     9999999999888653     67888899888765    4445577788877  44


Q ss_pred             CCeEe
Q psy221          104 NGEFV  108 (205)
Q Consensus       104 ~G~~I  108 (205)
                      +|+.+
T Consensus        88 ~G~~v   92 (113)
T d1r26a_          88 SGKML   92 (113)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            88544

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.79  E-value=9.8e-05  Score=52.85  Aligned_cols=72  Identities=15%  Similarity=0.239  Sum_probs=50.4

Q ss_pred             ChHHHHHHHHHhcCCc-EEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221           28 STDVQKSIDEMVKKSK-VVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQ  100 (205)
Q Consensus        28 ~~~~~~~l~~~~~~~~-Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPq  100 (205)
                      .++.++.+.+..+.++ |+| |..     +||++|+.+...|+++     ++.+..+|++.++++.    +..+-..+|.
T Consensus        14 ~~~~~~~~~~~~~~~~~vlv~F~a-----~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~~~~~~l~----~~~~V~~~Pt   84 (114)
T d1xfla_          14 VETWNEQLQKANESKTLVVVDFTA-----SWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVA----SDWAIQAMPT   84 (114)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEEC-----TTCHHHHHHHHHHHHHHHHCSSEEEEEEETTTSHHHH----HHTTCCSSSE
T ss_pred             HHHHHHHHHHhhccCCeEEEEEEc-----CCCCCccccccchhhhcccccccceeEEEeeeceeec----cccceeeeEE
Confidence            3456666777776655 444 667     9999999999888653     4667778888777543    3456778887


Q ss_pred             E--eeCCeEe
Q psy221          101 V--FINGEFV  108 (205)
Q Consensus       101 v--FI~G~~I  108 (205)
                      +  |-+|+.+
T Consensus        85 ~~~~~~G~~v   94 (114)
T d1xfla_          85 FMFLKEGKIL   94 (114)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEEECCEEE
Confidence            7  4488765

>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class phi GST
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.77  E-value=4.1e-05  Score=52.49  Aligned_cols=69  Identities=12%  Similarity=0.104  Sum_probs=55.8

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +.||..     +.||+|.+++-+|++.|++|+.+.|+..  +...+++.++.-..++|.+..||..|-....+.+.
T Consensus         2 ~kLY~~-----~~s~~~~~v~~~l~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~Y   72 (84)
T d1gnwa2           2 IKVFGH-----PASIATRRVLIALHEKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLKLFESRAITQY   72 (84)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSTTGGGTCTTCCSCEEEETTEEEECHHHHHHH
T ss_pred             eEEEeC-----CCChHHHHHHHHHHHcCCCcEeecccCCcccccHHHHHHHhhcCcceEEEECCcEEecHHHHHHH
Confidence            568988     9999999999999999999998887643  33345667776677999999999888776666554

>d1jlva2 c.47.1.5 (A:1-84) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class delta GST
species: Mosquito (Anopheles dirus b), isozyme 1-3 [TaxId: 123217]

Probab=97.73  E-value=0.00011  Score=50.43  Aligned_cols=68  Identities=13%  Similarity=0.056  Sum_probs=55.1

Q ss_pred             EEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccC--CHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           45 VVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLK--DESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        45 vlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~--d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .+|..     +.|++|++++-+|+++|++|+.+.|+.  .+...+++.+++...++|.+..||..|-....+.+.
T Consensus         2 kLY~~-----~~S~~~~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~d~~~~l~ES~aI~~y   71 (84)
T d1jlva2           2 DFYYL-----PGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKINPQHCIPTLVDNGFALWESRAICTY   71 (84)
T ss_dssp             EEEEC-----TTCHHHHHHHHHHHHTTCCCEEEECCGGGTGGGSHHHHHHCTTCCSCEEEETTEEEESHHHHHHH
T ss_pred             EEEcC-----CCCHHHHHHHHHHHHcCCCCEEEEecCCCCccCCHHHHHHhccccCCEEEECCEEEEcHHHHHHH
Confidence            47888     999999999999999999999998864  334456777888888999999888877666655554

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.65  E-value=0.00019  Score=51.20  Aligned_cols=72  Identities=15%  Similarity=0.265  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHhcC-CcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221           29 TDVQKSIDEMVKK-SKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQ  100 (205)
Q Consensus        29 ~~~~~~l~~~~~~-~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPq  100 (205)
                      ++.++.+.+..++ .+|+| |..     +||++|+.++..|++.      .+.|-.+|++.++++    .+..+-..+|.
T Consensus        11 ~~fd~~l~~~~~~~k~vvv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~v~~~~vd~d~~~~l----~~~~~v~~~Pt   81 (112)
T d1ep7a_          11 AAWDAQLAKGKEEHKPIVVDFTA-----TWCGPCKMIAPLFETLSNDYAGKVIFLKVDVDAVAAV----AEAAGITAMPT   81 (112)
T ss_dssp             HHHHHHHHHHHHHTCCEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTSEEEEEETTTTHHH----HHHHTCCBSSE
T ss_pred             HHHHHHHHHHhhcCCeEEEEEEc-----CCcCCCcccchhhhhhhhcccceEEEEEeeccccccc----cccccccCCCE
Confidence            4556667766654 34555 556     9999999999988543      377888888877644    44456677887


Q ss_pred             E--eeCCeEee
Q psy221          101 V--FINGEFVG  109 (205)
Q Consensus       101 v--FI~G~~IG  109 (205)
                      +  |-+|+.+.
T Consensus        82 ~~~~~~G~~v~   92 (112)
T d1ep7a_          82 FHVYKDGVKAD   92 (112)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEEECCEEEE
Confidence            6  44787543

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.60  E-value=5.3e-06  Score=56.35  Aligned_cols=61  Identities=23%  Similarity=0.415  Sum_probs=42.5

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHh----CC--CCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCC--eEeech
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRM----HD--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVFING--EFVGGC  111 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G--~~IGG~  111 (205)
                      -.|++|..     +||++|+.+...+++    ++  +.+..+|.+.+++    +.+..+-..+|.+++++  +++|..
T Consensus         4 v~v~~F~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~d~~~~----la~~~~V~~~Pt~~i~~~g~~~G~~   72 (85)
T d1fo5a_           4 VKIELFTS-----PMCPHCPAAKRVVEEVANEMPDAVEVEYINVMENPQ----KAMEYGIMAVPTIVINGDVEFIGAP   72 (85)
T ss_dssp             EEEEEEEC-----CCSSCCCTHHHHHHHHHHHCSSSEEEEEEESSSSCC----TTTSTTTCCSSEEEETTEEECCSSS
T ss_pred             eEEEEEEC-----CCCcChHhhhhhcccccccccccccccccccccccc----ccccCCceEeeEEEEECCcEEECCC
Confidence            35677888     999999999888854    33  3455666665554    33455778899998865  566664

>d1z3ea1 c.47.1.12 (A:1-114) Regulatory protein Spx {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Regulatory protein Spx
species: Bacillus subtilis [TaxId: 1423]

Probab=97.58  E-value=5e-05  Score=55.07  Aligned_cols=46  Identities=17%  Similarity=0.415  Sum_probs=40.7

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhC
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTS   94 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g   94 (205)
                      |+||..     ++|.-|++|+++|+++|++|+.+|+.+++--.++|.++..
T Consensus         2 i~ly~~-----~~C~~~rka~~~L~~~~i~~~~~d~~~~p~s~~eL~~ll~   47 (114)
T d1z3ea1           2 VTLYTS-----PSCTSCRKARAWLEEHEIPFVERNIFSEPLSIDEIKQILR   47 (114)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHTTCCEEEEETTTSCCCHHHHHHHHH
T ss_pred             EEEEcC-----CCCHHHHHHHHHHHHCCCCeEEEeeeccCCCHHHHHHHHH
Confidence            679999     9999999999999999999999999998766677776653

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=97.56  E-value=0.00018  Score=51.29  Aligned_cols=85  Identities=19%  Similarity=0.278  Sum_probs=56.7

Q ss_pred             hHHHHHHHHHhcCCc-EEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221           29 TDVQKSIDEMVKKSK-VVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV  101 (205)
Q Consensus        29 ~~~~~~l~~~~~~~~-Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv  101 (205)
                      ++.++.++++++.++ |+| |..     +||+.|+.+...|+++     ++.+-.+|++.++++..    ..+-..+|.+
T Consensus        13 e~~~~~l~~~~~~~k~vvv~F~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~vd~d~~~~l~~----~~~I~~~Pt~   83 (113)
T d1ti3a_          13 DTWKEHFEKGKGSQKLIVVDFTA-----SWCPPCKMIAPIFAELAKKFPNVTFLKVDVDELKAVAE----EWNVEAMPTF   83 (113)
T ss_dssp             HHHHHHHHHHTTSSSEEEEEEEC-----SSCHHHHHHHHHHHHHHHHCSSEEEEEEETTTCHHHHH----HHHCSSTTEE
T ss_pred             HHHHHHHHHHHcCCCEEEEEEEc-----CccccchhhhhhhhhhhccCCCceEEeeeeeccccccc----cCeecccceE
Confidence            456677888877654 444 666     9999999999887643     45677888887775543    3455678877


Q ss_pred             --eeCCeEe---echhHHHHHHhcccHHHHHhh
Q psy221          102 --FINGEFV---GGCDILLKLHQSGELVEQLEK  129 (205)
Q Consensus       102 --FI~G~~I---GG~del~~l~e~GeL~~~L~~  129 (205)
                        |-+|+.+   .|.+       ..+|.++|++
T Consensus        84 ~~~k~G~~v~~~~G~~-------~~~l~~~i~k  109 (113)
T d1ti3a_          84 IFLKDGKLVDKTVGAD-------KDGLPTLVAK  109 (113)
T ss_dssp             EEEETTEEEEEEECCC-------TTHHHHHHHH
T ss_pred             EEEECCEEEEEEcCCC-------HHHHHHHHHH
Confidence              4588754   3443       2456666654

>d1rw1a_ c.47.1.12 (A:) Hypothetical protein PA3664 (YffB) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Hypothetical protein PA3664 (YffB)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.49  E-value=3.7e-05  Score=55.69  Aligned_cols=45  Identities=22%  Similarity=0.304  Sum_probs=37.8

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEY   92 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~   92 (205)
                      .++||..     +.|.-|++++++|+++||+|+++|+.+++--.++|.++
T Consensus         1 t~~iY~~-----p~Cs~srka~~~L~~~~i~~~~idy~k~pls~~eL~~l   45 (114)
T d1rw1a_           1 TYVLYGI-----KACDTMKKARTWLDEHKVAYDFHDYKAVGIDREHLRRW   45 (114)
T ss_dssp             CEEEEEC-----SSCHHHHHHHHHHHHTTCCEEEEEHHHHCCCHHHHHHH
T ss_pred             CEEEEEC-----CCChHHHHHHHHHHHcCCCeEEEEccccCCCHHHHHHH
Confidence            4899999     99999999999999999999999997765444555544

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.0003  Score=49.31  Aligned_cols=59  Identities=24%  Similarity=0.345  Sum_probs=42.6

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEee
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVG  109 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IG  109 (205)
                      ..|+| |..     +||+.|+.+...|.++     ++.+-.+|++.+++.    .+..+-..+|.+  |-||+.++
T Consensus        21 k~vvv~F~a-----~wC~~C~~~~p~~~~l~~~~~~~~~~~vd~d~~~~~----~~~~~V~~~Pt~~~~~~G~~v~   87 (105)
T d2ifqa1          21 KLVVVDFSA-----TWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDCQDV----ASECEVKCMPTFQFFKKGQKVG   87 (105)
T ss_dssp             SCEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTCHHH----HHHTTCCBSSEEEEEETTEEEE
T ss_pred             CEEEEEEEc-----CCccchhhhhhhhhhhccccccceeeecccccCHhH----HHHcCceEEEEEEEEECCEEEE
Confidence            34555 677     9999999999988654     455778888877754    344577788987  44887654

>d2a2ra2 c.47.1.5 (A:1-77) Class pi GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00055  Score=45.48  Aligned_cols=70  Identities=13%  Similarity=0.107  Sum_probs=53.6

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      ++.+|--     +....|+.++-+|...|++|+++.++.+.....+.....-...+|.+..||..|.....+.+.
T Consensus         2 ~~~L~yf-----~~~g~~~~vr~~L~~~gi~ye~~~v~~~~~~~~~~~~~~p~g~vP~L~~~g~~i~eS~aI~~y   71 (77)
T d2a2ra2           2 PYTVVYF-----PVRGRCAALRMLLADQGQSWKEEVVTVETWQEGSLKASCLYGQLPKFQDGDLTLYQSNTILRH   71 (77)
T ss_dssp             SEEEEEC-----SSSGGGHHHHHHHHHTTCCEEEEECCHHHHHHSHHHHHSTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CEEEEEc-----CCchhHHHHHHHHHHcCCCcEEEEecccccccccccccCCCCCCCEEEECCEeeecHHHHHHH
Confidence            4667665     667889999999999999999999976554333444444456899999999999887766654

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.35  E-value=0.0005  Score=47.84  Aligned_cols=66  Identities=20%  Similarity=0.385  Sum_probs=46.0

Q ss_pred             HHHHhcCC-cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCC
Q psy221           35 IDEMVKKS-KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FING  105 (205)
Q Consensus        35 l~~~~~~~-~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G  105 (205)
                      ++++++++ .|+| |..     +||+.|..+...|+++     ++.+-.+|++.+++    +.+..+-..+|.+  |.+|
T Consensus        11 f~~~i~~~~~vvv~F~a-----~wC~~C~~~~~~~~~l~~~~~~~~~~~vd~d~~~~----~~~~~~V~~~Pt~i~~k~G   81 (103)
T d1syra_          11 FDSIISQNELVIVDFFA-----EWCGPCKRIAPFYEECSKTYTKMVFIKVDVDEVSE----VTEKENITSMPTFKVYKNG   81 (103)
T ss_dssp             HHHHHHHCSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTTTHH----HHHHTTCCSSSEEEEEETT
T ss_pred             HHHHHhCCCcEEEEEeC-----CcccCcccccccchhhhhcccceEEEeeccccCcc----eeeeeeeecceEEEEEECC
Confidence            44555443 4444 666     9999999999888654     56688888887775    3445577889986  5588


Q ss_pred             eEee
Q psy221          106 EFVG  109 (205)
Q Consensus       106 ~~IG  109 (205)
                      +.++
T Consensus        82 ~~v~   85 (103)
T d1syra_          82 SSVD   85 (103)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7653

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=0.00045  Score=48.89  Aligned_cols=71  Identities=17%  Similarity=0.194  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHhcCCcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE-
Q psy221           29 TDVQKSIDEMVKKSKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV-  101 (205)
Q Consensus        29 ~~~~~~l~~~~~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv-  101 (205)
                      ++.++.+...- ...|+| |..     +||+.|+.+...|+++     ++.|-.+|++.++++    .+..+-..+|.+ 
T Consensus        10 ~~f~~~l~~~~-~klvvv~F~a-----~wC~~Ck~~~p~~~~la~~~~~~~f~~vd~d~~~~l----~~~~~v~~~Pt~~   79 (107)
T d1gh2a_          10 PDFQPELSGAG-SRLAVVKFTM-----RGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGT----AATNNISATPTFQ   79 (107)
T ss_dssp             GGHHHHHHHTT-TSCEEEEEEC-----SSCHHHHHHHHHHHHHHHHCTTSEEEEEETTTSHHH----HHHTTCCSSSEEE
T ss_pred             HHHHHHHHhCC-CCEEEEEEEC-----CCCCCccccchhhhccccccccccccccccccchhh----hhhcCceeceEEE
Confidence            45555554432 233444 777     9999999999888543     677888898887654    344566778876 


Q ss_pred             -eeCCeEee
Q psy221          102 -FINGEFVG  109 (205)
Q Consensus       102 -FI~G~~IG  109 (205)
                       |-+|+.++
T Consensus        80 ~~~~G~~v~   88 (107)
T d1gh2a_          80 FFRNKVRID   88 (107)
T ss_dssp             EEETTEEEE
T ss_pred             EEECCEEEE
Confidence             55887654

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.23  E-value=0.0012  Score=46.82  Aligned_cols=72  Identities=13%  Similarity=0.170  Sum_probs=47.2

Q ss_pred             HHHHHHhcC-CcEEEEEeeCCCCCCChHHHHHHHHHHh----CCCCeEEEEccCC--HhHHHHHHHHhCCCCccEEee--
Q psy221           33 KSIDEMVKK-SKVVVFMKGVPEAPRCGFSNAVVQILRM----HDVPYDSHDVLKD--ESIRNGIKEYTSWPTIPQVFI--  103 (205)
Q Consensus        33 ~~l~~~~~~-~~VvlYsk~~~~~~~Cp~C~~ak~lL~~----~gV~~~e~DI~~d--~~~~~eL~~~~g~~tvPqvFI--  103 (205)
                      +.++++++. .+++||...    +|||+|+++...|.+    ++..+..++++..  .+..+.+.+..+-.++|.+++  
T Consensus        17 ~~~~~~i~~~~~~~v~f~~----~~C~~C~~~~p~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~V~~~PTli~~~   92 (115)
T d1zmaa1          17 VRAQEALDKKETATFFIGR----KTCPYCRKFAGTLSGVVAETKAHIYFINSEEPSQLNDLQAFRSRYGIPTVPGFVHIT   92 (115)
T ss_dssp             HHHHHHHHTTCCEEEEEEC----TTCHHHHHHHHHHHHHHHHHCCCCEEEETTCGGGHHHHHHHHHHHTCCSSCEEEEEE
T ss_pred             HHHHHHHhcCCCEEEEEcC----CCCccHHHHHHHHHHHHHHhhhhhhhheeecccccccccccccccccccccEEEEEE
Confidence            345555543 345554443    999999999988854    4667777787643  333345666668889999855  


Q ss_pred             CCeEe
Q psy221          104 NGEFV  108 (205)
Q Consensus       104 ~G~~I  108 (205)
                      +|+.+
T Consensus        93 ~gk~~   97 (115)
T d1zmaa1          93 DGQIN   97 (115)
T ss_dssp             TTEEE
T ss_pred             CCEEE
Confidence            66643

>d1woua_ c.47.1.16 (A:) Putative 42-9-9 protein (thioredoxin containing protein Txnl5) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Txnl5-like
domain: Putative 42-9-9 protein (thioredoxin containing protein Txnl5)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00061  Score=49.20  Aligned_cols=70  Identities=7%  Similarity=0.143  Sum_probs=46.3

Q ss_pred             cEEEEEeeCC---CCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHH---HHHHHhCCCCccEEee--CCeEe
Q psy221           43 KVVVFMKGVP---EAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRN---GIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        43 ~VvlYsk~~~---~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~---eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      .|+||..++.   +.+||++|+++...+.++      ++.|-.+|++..++..+   .+.+..+-..+|.+.+  +|+.+
T Consensus        23 ~v~v~F~a~~~~~g~sWC~pCk~~~P~~~~l~~~~~~~~~~~~vdv~~~~~~~d~~~~l~~~~~V~~iPT~i~~~~g~~l  102 (119)
T d1woua_          23 TIFAYFTGSKDAGGKSWCPDCVQAEPVVREGLKHISEGCVFIYCQVGEKPYWKDPNNDFRKNLKVTAVPTLLKYGTPQKL  102 (119)
T ss_dssp             EEEEEEECCBCTTCCBSCHHHHHHHHHHHHHGGGCCTTEEEEEEECCCHHHHHCTTCHHHHHHCCCSSSEEEETTSSCEE
T ss_pred             EEEEEEEecCCCCCCCCChhHHHHHHHHHHHHHhcCCceEEEEEECCCCcccchhhhhHHHhCCeEEEEEEEEEECCeEE
Confidence            5777766432   347999999999998653      24566778765444332   3555568889999753  66666


Q ss_pred             echh
Q psy221          109 GGCD  112 (205)
Q Consensus       109 GG~d  112 (205)
                      .+.+
T Consensus       103 ~~~~  106 (119)
T d1woua_         103 VESE  106 (119)
T ss_dssp             EGGG
T ss_pred             eeee
Confidence            5544

>d2cvda2 c.47.1.5 (A:2-75) Class sigma GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.0023  Score=42.25  Aligned_cols=69  Identities=14%  Similarity=0.196  Sum_probs=54.2

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKLH  118 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l~  118 (205)
                      ++.||.-     +..+.|+.++-+|...||+|++++++.+.  ..+.+.......+|.+..||..|.....+.+..
T Consensus         2 ~~kL~yf-----~~~~~~~~vRl~L~~~gi~~e~~~~~~~~--~~~~~~~~p~g~vP~L~~~g~~l~qS~AI~~yL   70 (74)
T d2cvda2           2 NYKLTYF-----NMRGRAEIIRYIFAYLDIQYEDHRIEQAD--WPEIKSTLPFGKIPILEVDGLTLHQSLAIARYL   70 (74)
T ss_dssp             CEEEEEE-----SSSGGGHHHHHHHHHTTCCCEEEEECGGG--HHHHHTTSTTSCSCEEEETTEEEECHHHHHHHH
T ss_pred             cEEEEEc-----CCcHHHHHHHHHHHHcCCCCEeccccccc--chhhcccCCCCCcCEEEECCEEEEcHHHHHHHH
Confidence            4567666     77889999999999999999999987543  345555556778999999999888777666543

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=97.02  E-value=0.0022  Score=44.52  Aligned_cols=59  Identities=15%  Similarity=0.305  Sum_probs=41.3

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      .+|+| |..     +||++|..+...+.+.      .+.+-.+|++.+++    +.+..+-..+|.+++  +|+.++
T Consensus        20 kpvlv~F~a-----~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~d~~~~----l~~~~~V~~~Pt~~~~~~G~~v~   87 (107)
T d1dbya_          20 VPVLVDFWA-----PWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTDESPN----VASEYGIRSIPTIMVFKGGKKCE   87 (107)
T ss_dssp             SCEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHHTCCSSCEEEEESSSSEEE
T ss_pred             CcEEEEEEC-----CCCCCccccChHHHHHHHhhcccceEEEEecccchh----HHHHhcccceEEEEEEECCeEEE
Confidence            35665 767     9999999999887543      34577788877764    444566778888744  776553

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=97.00  E-value=0.0013  Score=45.92  Aligned_cols=59  Identities=10%  Similarity=0.235  Sum_probs=42.6

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEee
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVG  109 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IG  109 (205)
                      .+|+| |..     +||++|+++...|++.      .+.+-.+|+++++++    .+..+-..+|.+++  +|+.++
T Consensus        21 ~~vlv~f~a-----~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~d~~~~l----~~~~~I~~~Pt~~~~~~g~~v~   88 (108)
T d1thxa_          21 QPVLVYFWA-----SWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTT----VKKYKVEGVPALRLVKGEQILD   88 (108)
T ss_dssp             SCEEEEEEC-----TTCTTHHHHHHHHHHHHHHTTTTCEEEEEESTTCHHH----HHHTTCCSSSEEEEEETTEEEE
T ss_pred             CcEEEEEEC-----CCCCCccccchHHHHHHHhcCCcceeceecccccHHH----HHHhcccCCCEEEEEECCEEEE
Confidence            34655 666     9999999999998643      356778888877754    44557778998866  887543

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.97  E-value=0.0016  Score=45.76  Aligned_cols=70  Identities=23%  Similarity=0.250  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhcCCcEEE-EEeeCCCCCCChHHHHHHHHHHhC----C--CCeEEEEccCCHhHHHHHHHHhCCCCccEEe
Q psy221           30 DVQKSIDEMVKKSKVVV-FMKGVPEAPRCGFSNAVVQILRMH----D--VPYDSHDVLKDESIRNGIKEYTSWPTIPQVF  102 (205)
Q Consensus        30 ~~~~~l~~~~~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~----g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqvF  102 (205)
                      +.+..+.+. +...|+| |..     +||+.|+..+..|+++    .  +.+-.+|++.+++    +.+..+-..+|.++
T Consensus        15 ~~~~~l~~~-~~k~vlv~f~a-----~wC~~C~~~~p~~~~l~~~~~~~~~~~~i~~d~~~~----l~~~~~V~~~Pt~~   84 (111)
T d1xwaa_          15 DLDGQLTKA-SGKLVVLDFFA-----TWCGPCKMISPKLVELSTQFADNVVVLKVDVDECED----IAMEYNISSMPTFV   84 (111)
T ss_dssp             HHHHHHHHH-TTSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCHH----HHHHTTCCSSSEEE
T ss_pred             HHHHHHHhc-CCCEEEEEEEC-----CcccCccccchhHHHHhhhcccceEEEEEEeecCcc----hhhcCCCccccEEE
Confidence            344444443 2334554 767     9999999999988654    2  3455666666554    44555667788774


Q ss_pred             e--CCeEee
Q psy221          103 I--NGEFVG  109 (205)
Q Consensus       103 I--~G~~IG  109 (205)
                      +  +|+.+.
T Consensus        85 ~~~~G~~v~   93 (111)
T d1xwaa_          85 FLKNGVKVE   93 (111)
T ss_dssp             EEETTEEEE
T ss_pred             EEECCEEEE
Confidence            4  776543

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=96.93  E-value=0.0027  Score=43.88  Aligned_cols=65  Identities=22%  Similarity=0.335  Sum_probs=45.3

Q ss_pred             HHHhcC-CcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCC
Q psy221           36 DEMVKK-SKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FING  105 (205)
Q Consensus        36 ~~~~~~-~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G  105 (205)
                      +++++. .+|+| |..     +||++|+.+...|+..      .+.+-.+|++.++.+    ....+-..+|.+  |-+|
T Consensus        11 ~~~i~~~k~vvv~F~a-----~wC~~C~~~~~~~~~l~~~~~~~~~~~~vd~~~~~~~----~~~~~V~~~Pt~~~~~~G   81 (105)
T d1nw2a_          11 QQAIQGDKPVLVDFWA-----AWCGPCRMMAPVLEEFAEAHADKVTVAKLNVDENPET----TSQFGIMSIPTLILFKGG   81 (105)
T ss_dssp             HHHTTSSSCEEEEEEC-----TTCHHHHHHHHHHHHHHHHHTTTCEEEEEETTTCHHH----HHHTTCCBSSEEEEEETT
T ss_pred             HHHHhCCCcEEEEEEC-----CCCCCcccccchhhhhhhhcCCceEEEEEECCCCccc----HHHCCcceeeEEEEEECC
Confidence            445544 34555 666     9999999999988653      477888898887755    344566778887  4488


Q ss_pred             eEee
Q psy221          106 EFVG  109 (205)
Q Consensus       106 ~~IG  109 (205)
                      +.++
T Consensus        82 ~~~~   85 (105)
T d1nw2a_          82 EPVK   85 (105)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6553

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00084  Score=49.90  Aligned_cols=65  Identities=12%  Similarity=0.069  Sum_probs=46.6

Q ss_pred             HHHHhc--CC-cEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--e
Q psy221           35 IDEMVK--KS-KVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--F  102 (205)
Q Consensus        35 l~~~~~--~~-~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--F  102 (205)
                      +++++.  .+ .|+| |..     +||+.|+++..+|.++      .+.+-.+|+++.++    +.+..+-..+|.+  |
T Consensus        13 ~dq~i~~~~~k~vvv~F~a-----~wC~~C~~~~p~l~~la~~~~~~v~~~~VDvd~~~~----la~~~~I~~~PT~~~f   83 (137)
T d1qgva_          13 VDQAILSEEDRVVVIRFGH-----DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPD----FNKMYELYDPCTVMFF   83 (137)
T ss_dssp             HHHHHHTCSSSEEEEEEEC-----TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTCCT----TTTSSCSCSSCEEEEE
T ss_pred             HHHHHHhCCCCEEEEEEEC-----CCCccchhcChHHHHHHHHhhccceEEEeeccccch----hhhhcCeeeEEEEEEE
Confidence            455553  23 4444 777     9999999999999654      36778889988874    3445566788987  6


Q ss_pred             eCCeEe
Q psy221          103 INGEFV  108 (205)
Q Consensus       103 I~G~~I  108 (205)
                      .+|+++
T Consensus        84 ~~g~~i   89 (137)
T d1qgva_          84 FRNKHI   89 (137)
T ss_dssp             ETTEEE
T ss_pred             eCCcEE
Confidence            689886

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=96.76  E-value=0.0047  Score=43.62  Aligned_cols=58  Identities=19%  Similarity=0.276  Sum_probs=40.2

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHh-----CCCCeEEEEccC-CHhHHHHHHHHhCCCCccEEee--CCeEe
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRM-----HDVPYDSHDVLK-DESIRNGIKEYTSWPTIPQVFI--NGEFV  108 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~-----~gV~~~e~DI~~-d~~~~~eL~~~~g~~tvPqvFI--~G~~I  108 (205)
                      .+|+| |..     +||++|+.+...|++     .++.+-.+|++. ++    +|.+..+-..+|.+.+  +|+.+
T Consensus        26 k~vvv~f~a-----~wC~~C~~~~p~~~~l~~~~~~v~~~~vd~~~~~~----~l~~~~~V~~~Pt~~~~k~G~~v   92 (112)
T d1f9ma_          26 KPVVLDMFT-----QWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENK----TLAKELGIRVVPTFKILKENSVV   92 (112)
T ss_dssp             SCEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSTTH----HHHHHHCCSSSSEEEEEETTEEE
T ss_pred             CEEEEEEEc-----CCCcchHHHHHHHhhhccccccceeecccccccch----hhHhheeeccCCEEEEEECCEEE
Confidence            35666 556     999999999998875     356677777754 33    4445557778888744  88764

>d1j9ba_ c.47.1.12 (A:) Arsenate reductase ArsC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ArsC-like
domain: Arsenate reductase ArsC
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.0006  Score=50.86  Aligned_cols=44  Identities=16%  Similarity=0.367  Sum_probs=37.9

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHH
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEY   92 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~   92 (205)
                      |+||..     +.|.-|++|.++|+++|++|+.+|+.+++--.++|..+
T Consensus         2 i~iY~~-----p~Cs~srkal~~L~~~~i~~~~idy~k~pls~~eL~~l   45 (138)
T d1j9ba_           2 ITIYHN-----PACGTSRNTLEMIRNSGTEPTIILYLENPPSRDELVKL   45 (138)
T ss_dssp             CEEECC-----TTCHHHHHHHHHHHHTTCCCEEECTTTSCCCHHHHHHH
T ss_pred             eEEEEC-----CCCHHHHHHHHHHHHCCCCeEEEeeccCCCCHHHHHHH
Confidence            689999     99999999999999999999999998876555555544

>d1eeja1 c.47.1.9 (A:61-216) Disulfide bond isomerase, DsbC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0026  Score=47.51  Aligned_cols=65  Identities=17%  Similarity=0.297  Sum_probs=41.3

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHh---CCCCeEEEEccC---CHh--------------------------------
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRM---HDVPYDSHDVLK---DES--------------------------------   84 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~---~gV~~~e~DI~~---d~~--------------------------------   84 (205)
                      .|++|+-     ..||||+++...|..   .++.+..+....   ++.                                
T Consensus        29 tIv~FsD-----~~CpyC~~~~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (156)
T d1eeja1          29 VITVFTD-----ITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASC  103 (156)
T ss_dssp             EEEEEEC-----TTCHHHHHHHTTHHHHHHTTEEEEEEECCTTCSSSHHHHHHHHHHTSSSHHHHHHHHHTTCCCCCCCC
T ss_pred             EEEEEeC-----CCCHHHHHHHHHHHHhhccCceEEEEeccccccchhhHHHHHHHHHhhhhhhhhHHHHhccccchhhh
Confidence            5778888     999999999766553   355554444321   110                                


Q ss_pred             -----HHHHHHHHhCCCCccEEee-CCeEeechh
Q psy221           85 -----IRNGIKEYTSWPTIPQVFI-NGEFVGGCD  112 (205)
Q Consensus        85 -----~~~eL~~~~g~~tvPqvFI-~G~~IGG~d  112 (205)
                           ...++....|-+..|.+|+ ||+.+-|+-
T Consensus       104 ~~~i~~~~~la~~lgv~GTPt~~~~nG~~v~G~~  137 (156)
T d1eeja1         104 DVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQ  137 (156)
T ss_dssp             SCCHHHHHHHHHHHTCCSSSEEECTTSCEEESCC
T ss_pred             cchHHHHHHHHHHcCCcCCCEEEEeCCeEecCCC
Confidence                 1112233347788999877 899998863

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=96.48  E-value=0.011  Score=40.52  Aligned_cols=60  Identities=23%  Similarity=0.353  Sum_probs=40.6

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC----C--CCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEee
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH----D--VPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVG  109 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~----g--V~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IG  109 (205)
                      ..+|+| |..     +||++|..++..+.+.    .  +.+-.+|++.+++    +.+..+-..+|.+  |-+|+.++
T Consensus        17 ~~~vlv~F~a-----~wC~~C~~~~~~~~~l~~~~~~~~~~~~v~~d~~~~----l~~~~~V~~~Pt~~~~~~G~~v~   85 (104)
T d1fb6a_          17 EVPVMVDFWA-----PWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG----IATQYNIRSIPTVLFFKNGERKE   85 (104)
T ss_dssp             SSCEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEETTEEEE
T ss_pred             CCcEEEEEEc-----CccCCccccCchhHHHHHhhcCccceeEEecccchh----hhhhcceeeeeEEEEEEcCeEEE
Confidence            345666 666     9999999999887654    2  3455666666654    4555677788887  44886553

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=96.47  E-value=0.008  Score=41.94  Aligned_cols=68  Identities=10%  Similarity=0.182  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhcCCcEEE-EEeeCCCCCCChHHHHHHHHH-------HhC-CCCeEEEEccCCHhHHHHHHHHhCCCCccE
Q psy221           30 DVQKSIDEMVKKSKVVV-FMKGVPEAPRCGFSNAVVQIL-------RMH-DVPYDSHDVLKDESIRNGIKEYTSWPTIPQ  100 (205)
Q Consensus        30 ~~~~~l~~~~~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL-------~~~-gV~~~e~DI~~d~~~~~eL~~~~g~~tvPq  100 (205)
                      +.+..+.+. +..+|+| |..     +||++|+.....+       +.. ++.+..+|+..+...-.+|.+..+-..+|.
T Consensus        12 ~~~~~l~~~-~gK~vlv~F~a-----~wC~~C~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt   85 (117)
T d2fwha1          12 ELNQALVEA-KGKPVMLDLYA-----DWCVACKEFEKYTFSDPQVQKALADTVLLQANVTANDAQDVALLKHLNVLGLPT   85 (117)
T ss_dssp             HHHHHHHHH-TTSCEEEEEEC-----TTCHHHHHHHHHTTTSHHHHHHTTTSEEEEEECTTCCHHHHHHHHHTTCCSSSE
T ss_pred             HHHHHHHHc-CCCeEEEEEec-----ccCCcccccchhHHhHHHHHHhccceEEEecccccchhHHHHHHhhhehhhceE
Confidence            444444443 2345666 555     9999999987654       212 344667777777666677777778888898


Q ss_pred             Eee
Q psy221          101 VFI  103 (205)
Q Consensus       101 vFI  103 (205)
                      +++
T Consensus        86 ~~~   88 (117)
T d2fwha1          86 ILF   88 (117)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            854

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=96.29  E-value=0.0062  Score=42.08  Aligned_cols=62  Identities=19%  Similarity=0.334  Sum_probs=40.5

Q ss_pred             HhcC-CcEEE-EEeeCCCCCCChHHHHHHHHHHh----CCC--CeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeE
Q psy221           38 MVKK-SKVVV-FMKGVPEAPRCGFSNAVVQILRM----HDV--PYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEF  107 (205)
Q Consensus        38 ~~~~-~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~----~gV--~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~  107 (205)
                      +++. .+|+| |..     +||++|+.+...+.+    ++-  .+-.+|++.++.    +.+..+-..+|.+++  +|+.
T Consensus        16 v~~~~~~v~v~F~a-----~wC~~C~~~~~~~~~~a~~~~~~~~~~~vd~d~~~~----l~~~~~v~~~PT~~~~~~G~~   86 (108)
T d2trxa_          16 VLKADGAILVDFWA-----EWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPG----TAPKYGIRGIPTLLLFKNGEV   86 (108)
T ss_dssp             TTTCSSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTEEEEEEETTTCTT----HHHHTTCCSSSEEEEEETTEE
T ss_pred             HHhCCCcEEEEEEC-----CCCCCccccCcHHHHHHHHhhcceeeeeccccchhh----HHHHhCCCcEEEEEEEECCEE
Confidence            3443 44655 666     999999988887743    333  455667776654    445567778888644  8865


Q ss_pred             e
Q psy221          108 V  108 (205)
Q Consensus       108 I  108 (205)
                      +
T Consensus        87 v   87 (108)
T d2trxa_          87 A   87 (108)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1t3ba1 c.47.1.9 (A:61-210) Disulfide bond isomerase, DsbC, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Disulfide bond isomerase, DsbC, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.28  E-value=0.0047  Score=45.81  Aligned_cols=65  Identities=18%  Similarity=0.310  Sum_probs=41.1

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC---CCCeEEEEc--cC-CHh--------------------------------
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH---DVPYDSHDV--LK-DES--------------------------------   84 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~---gV~~~e~DI--~~-d~~--------------------------------   84 (205)
                      .|++|+-     ..||||+++...+..+   ++.+..+..  .. ++.                                
T Consensus        29 ~I~~FsD-----~~CPyC~~~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~~~~~~~~~~~~~  103 (150)
T d1t3ba1          29 VVTVFMD-----ITCHYCHLLHQQLKEYNDLGITVRYLAFPRAGMNNQTAKQMEAIWTAKDPVFALNEAEKGNLPKEVKT  103 (150)
T ss_dssp             EEEEEEC-----TTCHHHHHHHTTHHHHHHTTEEEEEEECCSSTTCSHHHHHHHHHHHSSSHHHHHHHHHTTCCCSSCCC
T ss_pred             EEEEEEC-----CCCHHHHHHhHHHHHHhccCceEEEEEecccccchhHHHHHHHHHHhhhHHHhhHhHhhhccccchhh
Confidence            4788888     9999999998765443   333333332  11 111                                


Q ss_pred             ---HH--HHHHHHhCCCCccEEee-CCeEeechh
Q psy221           85 ---IR--NGIKEYTSWPTIPQVFI-NGEFVGGCD  112 (205)
Q Consensus        85 ---~~--~eL~~~~g~~tvPqvFI-~G~~IGG~d  112 (205)
                         ++  .++.+..|-+..|.+|+ ||+.|-|+-
T Consensus       104 ~~~i~~~~~la~~lGv~GTPt~~~~nG~~i~G~~  137 (150)
T d1t3ba1         104 PNIVKKHYELGIQFGVRGTPSIVTSTGELIGGYL  137 (150)
T ss_dssp             SSHHHHHHHHHHHHTCCSSCEEECTTSCCCCSCC
T ss_pred             hhHHHHHHHHHHhcCcCCCCEEEEcCCcEecCCC
Confidence               11  12233457789999877 899998864

>d2gsqa2 c.47.1.5 (A:1-75) Class sigma GST {Squid (Ommastrephes sloani pacificus) [TaxId: 6634]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Squid (Ommastrephes sloani pacificus) [TaxId: 6634]

Probab=96.26  E-value=0.013  Score=38.60  Aligned_cols=68  Identities=15%  Similarity=0.146  Sum_probs=52.2

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +..||--     +.-..|+.++-+|...||+|+++.+..+.  ..+.+.......+|.+.+||..|.....+.+.
T Consensus         2 ~~~L~yf-----~~~g~~~~iRl~L~~~gi~ye~~~~~~~~--~~~~~~~~p~g~lPvL~~~g~~i~eS~aI~~y   69 (75)
T d2gsqa2           2 KYTLHYF-----PLMGRAELCRFVLAAHGEEFTDRVVEMAD--WPNLKATMYSNAMPVLDIDGTKMSQSMCIARH   69 (75)
T ss_dssp             CEEEEEC-----SSSGGGHHHHHHHHHTTCCCEEEECCTTT--HHHHGGGSGGGSSCEEEETTEEECCHHHHHHH
T ss_pred             CEEEEec-----CCchhHHHHHHHHHHcCCCchhhcccccc--chhhhhccccCCcCEEEECCeeeecHHHHHHH
Confidence            3456555     55678999999999999999999987654  34555555566899999999988877766654

>d1iloa_ c.47.1.1 (A:) MTH985, a thioredoxin {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH985, a thioredoxin
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.13  E-value=0.006  Score=41.15  Aligned_cols=55  Identities=13%  Similarity=0.329  Sum_probs=41.0

Q ss_pred             cEEEEEeeCCCCCCChHHHHH----HHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEe
Q psy221           43 KVVVFMKGVPEAPRCGFSNAV----VQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFV  108 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~a----k~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~I  108 (205)
                      +|-|+ .     ++|+.|.++    ++.+.++|++.+..+|..-    .++.+ +|-.++|.+.|||+.+
T Consensus         3 ~IkVl-g-----~gC~~C~~~~~~v~~a~~e~gi~a~v~kv~d~----~ei~~-ygVmstPalvIdg~vv   61 (77)
T d1iloa_           3 KIQIY-G-----TGCANCQMLEKNAREAVKELGIDAEFEKIKEM----DQILE-AGLTALPGLAVDGELK   61 (77)
T ss_dssp             EEEEE-C-----SSSSTTHHHHHHHHHHHHHTTCCEEEEEECSH----HHHHH-HTCSSSSCEEETTEEE
T ss_pred             EEEEe-C-----CCCccHHHHHHHHHHHHHHcCCceEEEEeCCH----HHHHH-cCCcCCCEEEECCEEE
Confidence            46667 3     689999955    4557889999998888532    23444 5888999999999864

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.08  E-value=0.013  Score=41.27  Aligned_cols=62  Identities=18%  Similarity=0.366  Sum_probs=41.9

Q ss_pred             HHHhcCC-cE-EEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--C
Q psy221           36 DEMVKKS-KV-VVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--N  104 (205)
Q Consensus        36 ~~~~~~~-~V-vlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~  104 (205)
                      +++++.+ .+ |.|..     +||++|+.+...++++       +|.+-.+|++.+++    |....+-..+|.|++  +
T Consensus        21 ~~~i~~~~~~lV~fya-----~wC~~C~~~~~~~~~la~~~~~~~v~~~~vd~~~~~~----l~~~~~v~~~Pti~~f~~   91 (119)
T d2b5ea4          21 NEYIQSHDLVLAEFFA-----PWCGHCKNMAPEYVKAAETLVEKNITLAQIDCTENQD----LCMEHNIPGFPSLKIFKN   91 (119)
T ss_dssp             HHHHTTCSEEEEEEEC-----TTCHHHHHHHHHHHHHHHHTTTTTCEEEEEETTTCHH----HHHHTTCCSSSEEEEEET
T ss_pred             HHHHhcCCeEEEEEEC-----CccCcccccchhhhhhhhhhcccceeeeeeeccchHH----HHHHhccccCCeEEEEEC
Confidence            4455443 34 44666     9999999988877542       46777888877654    444556778998865  7


Q ss_pred             Ce
Q psy221          105 GE  106 (205)
Q Consensus       105 G~  106 (205)
                      |+
T Consensus        92 g~   93 (119)
T d2b5ea4          92 SD   93 (119)
T ss_dssp             TC
T ss_pred             CE
Confidence            63

>d1z6na1 c.47.1.1 (A:1-166) Hypothetical protein PA1234 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Hypothetical protein PA1234
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.91  E-value=0.0012  Score=49.89  Aligned_cols=71  Identities=10%  Similarity=0.131  Sum_probs=43.6

Q ss_pred             CChHHHHHHHHHhcCCcEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221           27 YSTDVQKSIDEMVKKSKVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV  101 (205)
Q Consensus        27 ~~~~~~~~l~~~~~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv  101 (205)
                      .+++..++++.+-....+++|..     +|||+|.+..-.|.++     ++.+..++++.+++..+..... +...+|.+
T Consensus        41 l~~~~~~~l~~~~~~~~~l~~~~-----tWC~~C~~~~P~l~~l~~~~~~~~~~~i~~d~~~~~~~~~~~~-~~~~~p~~  114 (166)
T d1z6na1          41 LPSALTERLQRIERRYRLLVAGE-----MWCPDCQINLAALDFAQRLQPNIELAIISKGRAEDDLRQRLAL-ERIAIPLV  114 (166)
T ss_dssp             CCHHHHHHHHTCCSCEEEEEECC-----TTCHHHHHHHHHHHHHHHHCTTEEEEEECHHHHHHHTTTTTTC-SSCCSSEE
T ss_pred             ccHHHHHHHHHhcCCeEEEEEEe-----CcCccHHHHHHHHHHHHHHCCCCcEEEEECccCHHHHHHHHHh-ccccccce
Confidence            45667777766555666788888     9999999999988654     3455666655443322222211 34455555


Q ss_pred             ee
Q psy221          102 FI  103 (205)
Q Consensus       102 FI  103 (205)
                      ++
T Consensus       115 ~~  116 (166)
T d1z6na1         115 LV  116 (166)
T ss_dssp             EE
T ss_pred             ee
Confidence            44

>d1m0ua2 c.47.1.5 (A:47-122) Class sigma GST {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.84  E-value=0.024  Score=37.33  Aligned_cols=69  Identities=13%  Similarity=0.209  Sum_probs=51.6

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +...||--     +.-..++.++-+|...||+|+.+.++.+.  ..+.+.......+|.+.+||..|.....+.+.
T Consensus         2 ~s~kL~Yf-----~~~g~~e~iRl~L~~~gi~yed~~~~~~~--~~~~~~~~p~g~lP~l~~~g~~l~qS~aI~~Y   70 (76)
T d1m0ua2           2 HSYTLFYF-----NVKALAEPLRYLFAYGNQEYEDVRVTRDE--WPALKPTMPMGQMPVLEVDGKRVHQSISMARF   70 (76)
T ss_dssp             CCEEEEEE-----SSSGGGHHHHHHHHHHTCCCEEEEECTTT--HHHHGGGSGGGCSCEEEETTEEEECHHHHHHH
T ss_pred             ccEEEEec-----CCchHHHHHHHHHHHcCCCCEEecCChhh--hhhhhccCcCCCCcEEEECCcccccHHHHHHH
Confidence            45556544     44567889999999999999999887543  34555555556899999999988887766654

>d1gula2 c.47.1.5 (A:4-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=95.83  E-value=0.02  Score=37.62  Aligned_cols=63  Identities=17%  Similarity=0.158  Sum_probs=44.7

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHH-HHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN-GIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~-eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +..+.++.++-+|+..|++|+.+.++..+.... ......-..++|.+..||..|.....+.+.
T Consensus         8 ~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~~y   71 (77)
T d1gula2           8 NGRGRMESVRWVLAAAGVEFDEEFLETKEQLYKLQDGNHLLFQQVPMVEIDGMKLVQTRSILHY   71 (77)
T ss_dssp             SSCTTTHHHHHHHHHTTCCCEEEEECSHHHHHHHHHTTCSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CCcchHHHHHHHHHHcCCCceEEeeccccccchhhhcccCCCCCCCEEEECCEeeecHHHHHHH
Confidence            455778999999999999999888865443322 122223346899999999988776665554

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.00065  Score=50.17  Aligned_cols=54  Identities=13%  Similarity=0.160  Sum_probs=37.6

Q ss_pred             CCChHHHHHHHHHHhC-----CCCeE--EEEccCCHhHHHHHHHHhCCCCccEEee--CCeEeechh
Q psy221           55 PRCGFSNAVVQILRMH-----DVPYD--SHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVGGCD  112 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~-----gV~~~--e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IGG~d  112 (205)
                      +|||.|..+.-+|.++     +..+.  .+|++    ...+|.+..+-..+|.+.+  +|+.++.+.
T Consensus        46 ~wCp~C~~~~pvl~ela~~~~~~~~~~a~Vd~d----~~~~la~~~~V~~~PT~~~~~~G~~v~~~~  108 (132)
T d2hfda1          46 KRTPEVSDNPVMIGELLREFPDYTWQVAIADLE----QSEAIGDRFGVFRFPATLVFTGGNYRGVLN  108 (132)
T ss_dssp             SCCSSSSCCTHHHHHHHTTCTTSCEEEEEECHH----HHHHHHHHHTCCSCCEEEEEETTEEEEEEC
T ss_pred             CCChhHHHHHHHHHHHHHHccCCcceeEEEEec----CCHHHHHhhccCcceeEEEEEcCcEeeeec
Confidence            8999999999888765     22333  34443    3356777778889997754  998877553

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.34  E-value=0.004  Score=44.77  Aligned_cols=54  Identities=9%  Similarity=0.102  Sum_probs=29.9

Q ss_pred             CCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCeEeec
Q psy221           55 PRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGEFVGG  110 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~~IGG  110 (205)
                      +|||.|+.+..+|.++     ++.+....|+.  +...++.+..|-..+|.+++  +|+.++-
T Consensus        40 ~wCp~C~~~~pvl~eL~~~~~~~~~~~~~Vd~--d~~~~l~~~~~V~~~Pt~~~~~~G~~v~~  100 (119)
T d2es7a1          40 RRTPEVSDNPVMIAELLREFPQFDWQVAVADL--EQSEAIGDRFNVRRFPATLVFTDGKLRGA  100 (119)
T ss_dssp             CC----CCHHHHHHHHHHTCTTSCCEEEEECH--HHHHHHHHTTTCCSSSEEEEESCC----C
T ss_pred             CCCccHHHHHHHHHHHHHhcCCCceEEEEEEC--CCCHHHHHhcCcCcceEEEEEEcCeEEEE
Confidence            7999999999998654     33444333332  22356777778889998854  7766543

>d1b48a2 c.47.1.5 (A:2-79) Class alpha GST {Mouse (Mus musculus), (a1-4) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Mouse (Mus musculus), (a1-4) [TaxId: 10090]

Probab=95.31  E-value=0.0086  Score=39.63  Aligned_cols=69  Identities=14%  Similarity=0.204  Sum_probs=48.0

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH--HhCCCCccEEeeCCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE--YTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~--~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +.++|.-     +..+.|+.++-+|+..||+|+++.++...... ....  ......+|.+..||..|.....+.+.
T Consensus         3 K~kL~yf-----~~~~~~~~vR~~L~~~gi~ye~~~~~~~~~~~-~~~~~~~~p~g~lPvL~~~g~~l~eS~AI~rY   73 (78)
T d1b48a2           3 KPKLYYF-----NGRGRMESIRWLLAAAGVEFEEEFLETREQYE-KMQKDGHLLFGQVPLVEIDGMMLTQTRAILSY   73 (78)
T ss_dssp             CCEEEBC-----SSCTTTHHHHHHHHHHTCCCCCCBCCCHHHHH-HHHTTTCSSSSCSCEEEETTEEECCHHHHHHH
T ss_pred             CcEEEEc-----CCchHHHHHHHHHHHcCCCcEEEEEcchhhhc-chhhcccccCCCCCEEEeCCeEEECHHHHHHH
Confidence            3455544     45678899999999999999988887543322 2222  23345799999999888776665554

>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class pi GST
species: Onchocerca volvulus [TaxId: 6282]

Probab=95.23  E-value=0.037  Score=36.40  Aligned_cols=61  Identities=15%  Similarity=0.271  Sum_probs=47.7

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      +....|+.++-+|...|++|+++.+..+.  ..+++.......+|.+..||..|.....+.+.
T Consensus         9 ~~~g~~e~iRl~L~~~gi~~e~~~~~~~~--~~~~~~~~p~g~lPvL~~~~~~l~qS~AI~~Y   69 (77)
T d1tu7a2           9 SIRGLAEPIRLFLVDQDIKFIDDRIAKDD--FSSIKSQFQFGQLPCLYDGDQQIVQSGAILRH   69 (77)
T ss_dssp             SSSGGGHHHHHHHHHTTCCCEEEEECGGG--STTTGGGSTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCceeeeccccc--chhhcccCCCCCCCEEEECCEEEEcHHHHHHH
Confidence            45678899999999999999988876443  23444555667899999999999888776664

>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Pf GST
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.19  E-value=0.08  Score=34.92  Aligned_cols=71  Identities=11%  Similarity=0.204  Sum_probs=49.3

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHH---HHH--hCCCCccEEeeCCeEeechhHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGI---KEY--TSWPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL---~~~--~g~~tvPqvFI~G~~IGG~del~~  116 (205)
                      .++++|--     +.-..++.++-+|+..|++|+.+.++.++......   ...  .-...+|.+..||..+.....+..
T Consensus         3 ~~i~L~Y~-----~~~gr~e~irl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~p~g~lP~l~~~g~~l~eS~AI~~   77 (85)
T d1okta2           3 DNIVLYYF-----DARGKAELIRLIFAYLGIEYTDKRFGVNGDAFVEFKNFKKEKDTPFEQVPILQIGDLILAQSQAIVR   77 (85)
T ss_dssp             CCEEEEEE-----SSSTTTHHHHHHHHHHTCCCEEEEETSSSCHHHHHHHHHHHSCCSSSCSCEEEETTEEEECHHHHHH
T ss_pred             CCeEEEEc-----CCchhhHHHHHHHHHcCCCceEEEEcccccchhhhhhhhhcccccCCCCCeeecCCCEEecHHHHHH
Confidence            46788655     34456789999999999999998887653222222   222  234689999999998877666555


Q ss_pred             H
Q psy221          117 L  117 (205)
Q Consensus       117 l  117 (205)
                      .
T Consensus        78 y   78 (85)
T d1okta2          78 Y   78 (85)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Phosducin
domain: Phosducin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.02  E-value=0.0063  Score=48.12  Aligned_cols=81  Identities=12%  Similarity=0.100  Sum_probs=51.0

Q ss_pred             cEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeEeechhHH
Q psy221           43 KVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEFVGGCDIL  114 (205)
Q Consensus        43 ~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~IGG~del  114 (205)
                      .||| |..     +||+.|..+...|..+     .|.|-.+|.+..+     +....+-..+|.|  |-||+.++.+-.+
T Consensus       122 ~Vvvhfy~-----~~~~~C~~~~~~l~~lA~~~~~vkF~ki~~~~~~-----~~~~~~i~~lPtl~~yk~G~~v~~~vg~  191 (217)
T d2trcp_         122 TIVVNIYE-----DGVRGCDALNSSLECLAAEYPMVKFCKIRASNTG-----AGDRFSSDVLPTLLVYKGGELISNFISV  191 (217)
T ss_dssp             EEEEEEEC-----TTSTTHHHHHHHHHHHHTTCTTSEEEEEEHHHHT-----CSTTSCGGGCSEEEEEETTEEEEEETTG
T ss_pred             eEEEEEEc-----CCCCChhhhhhhHHHHhhhcccceEEEEccccch-----hHHhCCCCCCCeEEEEECCEEEEEEECc
Confidence            3555 777     9999999999999765     3556666654322     1223355678987  4599988754333


Q ss_pred             HHH----HhcccHHHHHhhcCCc
Q psy221          115 LKL----HQSGELVEQLEKGDQK  133 (205)
Q Consensus       115 ~~l----~e~GeL~~~L~~~~~~  133 (205)
                      .++    .....|..+|...++.
T Consensus       192 ~~~~g~~~~~~~lE~~L~~~g~l  214 (217)
T d2trcp_         192 AEQFAEDFFAADVESFLNEYGLL  214 (217)
T ss_dssp             GGGSCSSCCHHHHHHHHHTTTCS
T ss_pred             cccccccCCHHHHHHHHHHcCCC
Confidence            322    1124477778776653

>d1tw9a2 c.47.1.5 (A:1-77) Class sigma GST {Heligmosomoides polygyrus [TaxId: 6339]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class sigma GST
species: Heligmosomoides polygyrus [TaxId: 6339]

Probab=94.69  E-value=0.11  Score=33.89  Aligned_cols=60  Identities=12%  Similarity=0.263  Sum_probs=45.7

Q ss_pred             CChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeCCeEeechhHHHHH
Q psy221           56 RCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        56 ~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .-..|+.+|-+|...|++|+++.+..+.  ....+.......+|.+.+||..|.....+.+.
T Consensus        11 ~~gr~e~vR~~L~~~gi~ye~~~~~~~~--~~~~~~~~p~g~lPvL~~~g~~i~qS~AI~~y   70 (77)
T d1tw9a2          11 GRGAGECARQVFALADQKYEDVRLTQET--FVPLKATFPFGQVPVLEVDGQQLAQSQAICRY   70 (77)
T ss_dssp             SSGGGHHHHHHHHHTTCCCEEEEECHHH--HGGGGGGSTTSCSCEEEETTEEEECHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCCceeeeccccc--chhhhhhcccCCCCEEEECCEEEEcHHHHHHH
Confidence            3467899999999999999998876432  23444445566899999999988877666554

>d1n2aa2 c.47.1.5 (A:1-80) Class beta GST {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.015  Score=38.44  Aligned_cols=63  Identities=13%  Similarity=0.099  Sum_probs=44.3

Q ss_pred             CCChHHHHHHHHHHhCCCCeEEEEccCC--H-hHHHHHHHHhCCCCccEEee-CCeEeechhHHHHHH
Q psy221           55 PRCGFSNAVVQILRMHDVPYDSHDVLKD--E-SIRNGIKEYTSWPTIPQVFI-NGEFVGGCDILLKLH  118 (205)
Q Consensus        55 ~~Cp~C~~ak~lL~~~gV~~~e~DI~~d--~-~~~~eL~~~~g~~tvPqvFI-~G~~IGG~del~~l~  118 (205)
                      +..+ +.+++-+|++.|++|+.+.|+..  . ...+++.++.-..++|.+.. ||..+-....+.+..
T Consensus         7 p~s~-s~~v~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~dg~~l~ES~aI~~yL   73 (80)
T d1n2aa2           7 PGAC-SLASHITLRESGKDFTLVSVDLMKKRLENGDDYFAVNPKGQVPALLLDDGTLLTEGVAIMQYL   73 (80)
T ss_dssp             TTST-THHHHHHHHHTTCCCEEEEEETTTTEETTCCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             CCcc-HHHHHHHHHHhCCCCEEEEEcCCCCcccCCHHHHHHhcccceeeEEecCCCEEcCHHHHHHHH
Confidence            4443 57999999999999998777532  1 23345666767789999987 567777666665543

>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class mu GST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.057  Score=35.65  Aligned_cols=70  Identities=13%  Similarity=0.222  Sum_probs=47.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhH---HHHH-----HHHhCCCCccEEeeCCeEeechhHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESI---RNGI-----KEYTSWPTIPQVFINGEFVGGCDIL  114 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~---~~eL-----~~~~g~~tvPqvFI~G~~IGG~del  114 (205)
                      |+++|--     +.-..++.++-+|...|++|+.+.++.++..   ..+.     +...-...+|.+..+|..|.....+
T Consensus         1 P~~L~Y~-----~~~g~~~~vR~~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lP~L~~~g~~l~eS~AI   75 (84)
T d2c4ja2           1 PMTLGYW-----NIRGLAHSIRLLLEYTDSSYEEKKYTMGDAPDYDRSQWLNEKFKLGLDFPNLPYLIDGTHKITQSNAI   75 (84)
T ss_dssp             CEEEEEE-----SSSGGGHHHHHHHHHTTCCEEEEEECCCCTTTTCCHHHHTTTTSSCCSSCCSSEEEETTEEEESHHHH
T ss_pred             CEEEEEC-----CCchhhHHHHHHHHHcCCCceEEEEccccccccchHHHhhhhhhccCCCCCCCEEEECCEEEecHHHH
Confidence            4556444     3456789999999999999999998754321   1111     1222345799999999988776666


Q ss_pred             HHH
Q psy221          115 LKL  117 (205)
Q Consensus       115 ~~l  117 (205)
                      .+.
T Consensus        76 l~Y   78 (84)
T d2c4ja2          76 LRY   78 (84)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1k3ya2 c.47.1.5 (A:2-80) Class alpha GST {Human (Homo sapiens), (a1-1) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Human (Homo sapiens), (a1-1) [TaxId: 9606]

Probab=94.11  E-value=0.076  Score=34.87  Aligned_cols=61  Identities=16%  Similarity=0.287  Sum_probs=43.7

Q ss_pred             CChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHH--HhCCCCccEEeeCCeEeechhHHHHH
Q psy221           56 RCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKE--YTSWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        56 ~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~--~~g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      .-..++.++-+|...||+|+++.+...... .....  ......+|.+.+||..|-....+.+.
T Consensus        11 ~~grae~irl~L~~~gv~yed~~~~~~~~~-~~~~~~~~~p~g~lPvl~~~g~~l~qS~AI~~Y   73 (79)
T d1k3ya2          11 ARGRMESTRWLLAAAGVEFEEKFIKSAEDL-DKLRNDGYLMFQQVPMVEIDGMKLVQTRAILNY   73 (79)
T ss_dssp             SSTTTHHHHHHHHHHTCCCEEEEECSHHHH-HHHHHTTCCTTSCSCEEEETTEEEESHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCceEEEecchhhh-hhhcccccCCCCCCCEEEECCeEEEcHHHHHHH
Confidence            345678999999999999999888754332 22222  23346899999999888776665554

>d1z6ma1 c.47.1.13 (A:1-172) Hypothetical protein EF0770 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Hypothetical protein EF0770
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.53  E-value=0.14  Score=37.11  Aligned_cols=22  Identities=18%  Similarity=0.410  Sum_probs=17.9

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHh
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRM   69 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~   69 (205)
                      .|+.|+.     ..||+|.+.-..+..
T Consensus        27 ~I~ef~d-----~~Cp~C~~~~~~~~~   48 (172)
T d1z6ma1          27 KMIEFIN-----VRCPYCRKWFEESEE   48 (172)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHH
T ss_pred             EEEEEEC-----CCCHhHHHHHHHHhh
Confidence            4677999     999999988777644

>d1pmta2 c.47.1.5 (A:1-80) Class beta GST {Proteus mirabilis [TaxId: 584]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Proteus mirabilis [TaxId: 584]

Probab=93.30  E-value=0.042  Score=36.20  Aligned_cols=59  Identities=8%  Similarity=0.130  Sum_probs=41.8

Q ss_pred             HHHHHHHHHhCCCCeEEEEccCC--HhHH-HHHHHHhCCCCccEEeeC-CeEeechhHHHHHH
Q psy221           60 SNAVVQILRMHDVPYDSHDVLKD--ESIR-NGIKEYTSWPTIPQVFIN-GEFVGGCDILLKLH  118 (205)
Q Consensus        60 C~~ak~lL~~~gV~~~e~DI~~d--~~~~-~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l~  118 (205)
                      +.+++-+|++.|++|+.+.|+..  .+.+ +++.++.-..++|.+.++ |..+-....+.+..
T Consensus        11 s~~vr~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~~g~~l~ES~aI~~yL   73 (80)
T d1pmta2          11 SLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDNGDILTEGVAIVQYL   73 (80)
T ss_dssp             THHHHHHHHHTTCCCEEEEEETTTTEETTSCBGGGTCTTCCSCEEECTTSCEEESHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCEEEEEecCCCcccCCHHHHHhcccccCCceecCCCcEEeCHHHHHHHH
Confidence            58999999999999997777643  2222 456667777899999885 56665555454443

>d1beda_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Vibrio cholerae [TaxId: 666]

Probab=93.24  E-value=0.15  Score=36.99  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=18.6

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHh
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRM   69 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~   69 (205)
                      ...||.|+.     ..||+|.+....+..
T Consensus        19 ~~~Ivef~d-----~~Cp~C~~~~~~~~~   42 (181)
T d1beda_          19 SPVVSEFFS-----FYCPHCNTFEPIIAQ   42 (181)
T ss_dssp             SCEEEEEEC-----TTCHHHHHHHHHHHH
T ss_pred             CCEEEEEEC-----CCCccchhhhhhhhh
Confidence            457888998     999999887666533

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.13  Score=37.64  Aligned_cols=94  Identities=11%  Similarity=0.103  Sum_probs=56.3

Q ss_pred             hHHHHHHHHHhcC-CcEEEEEeeCCCCCCChHHHHHHH----------HHHhCCCCeEEEEccCCHhHHHHHHHHhCCCC
Q psy221           29 TDVQKSIDEMVKK-SKVVVFMKGVPEAPRCGFSNAVVQ----------ILRMHDVPYDSHDVLKDESIRNGIKEYTSWPT   97 (205)
Q Consensus        29 ~~~~~~l~~~~~~-~~VvlYsk~~~~~~~Cp~C~~ak~----------lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~t   97 (205)
                      -++++.++...++ ..|+||..+    +||++|+...+          ++++   .|..+.++.+.+--..+.+..+...
T Consensus        29 ~~~~~A~~~Ak~~~K~llV~~~~----~~C~~C~~m~~~v~~d~~V~~~l~~---~fV~~~v~~~~~e~~~~~~~y~v~~  101 (147)
T d2dlxa1          29 GSFETAKECGQMQNKWLMINIQN----VQDFACQCLNRDVWSNEAVKNIIRE---HFIFWQVYHDSEEGQRYIQFYKLGD  101 (147)
T ss_dssp             SCHHHHHHHHHHHTCEEEEEEEC----SCTTTHHHHHHHTTTCHHHHHHHHH---TEEEEEEESSSHHHHHHHHHHTCCS
T ss_pred             CCHHHHHHHHHHcCCcEEEEEec----CCCCchHHHHHhccCCHHHHHHHhh---heeEeeecccchhhhhhhhheecCc
Confidence            3466666666654 466776665    89999987644          3333   3555555544433456666778888


Q ss_pred             ccEE-eeC---CeE---eechhHHHHHHhcccHHHHHhhcCC
Q psy221           98 IPQV-FIN---GEF---VGGCDILLKLHQSGELVEQLEKGDQ  132 (205)
Q Consensus        98 vPqv-FI~---G~~---IGG~del~~l~e~GeL~~~L~~~~~  132 (205)
                      +|.+ ||+   |+.   +|+.+ ..++.  ..|++.|...+.
T Consensus       102 ~Pti~~idp~~ge~v~~~~~~~-~~~fl--~~L~~fl~~~~~  140 (147)
T d2dlxa1         102 FPYVSILDPRTGQKLVEWHQLD-VSSFL--DQVTGFLGEHGQ  140 (147)
T ss_dssp             SSEEEEECTTTCCCCEEESSCC-HHHHH--HHHHHHHHHTCS
T ss_pred             eeEEEEEeCCCCeEecccCCCC-HHHHH--HHHHHHHhhCCC
Confidence            9977 554   544   44443 33332  347777776543

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=93.02  E-value=0.075  Score=37.39  Aligned_cols=57  Identities=16%  Similarity=0.192  Sum_probs=35.5

Q ss_pred             cEEEEEeeCCCCCCChHH------HHHHHHHH-------hCCCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCeE
Q psy221           43 KVVVFMKGVPEAPRCGFS------NAVVQILR-------MHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGEF  107 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C------~~ak~lL~-------~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~~  107 (205)
                      -+|.|..     +||++|      ..+...++       ..+|.+-.+|.+.++++    ....+-..+|.|  |.+|+.
T Consensus        31 ~~V~Fya-----pwC~~~~~~~~~~~~~~~~~~~a~~~~~~~v~~a~Vd~~~~~~l----~~~~~I~~yPTi~~f~~g~~  101 (124)
T d1a8ya1          31 LALLYHE-----PPEDDKASQRQFEMEELILELAAQVLEDKGVGFGLVDSEKDAAV----AKKLGLTEEDSIYVFKEDEV  101 (124)
T ss_dssp             EEEEEEC-----CCCSSHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEETTTSHHH----HHTTTCCSTTCEEEEESSSE
T ss_pred             EEEEEEC-----CCccchhhhhHHHHHHHHHHHHHHHhccCCeEEEEEEeecccch----hhccccccCCcEEEeccCcc
Confidence            4666878     999865      33333333       44688889998888754    333444445554  668865


Q ss_pred             e
Q psy221          108 V  108 (205)
Q Consensus       108 I  108 (205)
                      +
T Consensus       102 ~  102 (124)
T d1a8ya1         102 I  102 (124)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class beta GST
species: Sphingomonas paucimobilis [TaxId: 13689]

Probab=92.72  E-value=0.07  Score=35.12  Aligned_cols=60  Identities=15%  Similarity=0.123  Sum_probs=43.7

Q ss_pred             HHHHHHHHHhCCCCeEEEEccCC--H-hHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHHHh
Q psy221           60 SNAVVQILRMHDVPYDSHDVLKD--E-SIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKLHQ  119 (205)
Q Consensus        60 C~~ak~lL~~~gV~~~e~DI~~d--~-~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l~e  119 (205)
                      ..+++-+|++.|++|+.+.++..  . ...+++.++.-..++|.+.++ |..|-....+.+..+
T Consensus        11 s~~v~~~L~e~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~d~g~~l~ES~aI~~yL~   74 (80)
T d1f2ea2          11 SLAPHIALRETGADFEAVKVDLAVRKTEAGEDFLTVNPSGKVPALTLDSGETLTENPAILLYIA   74 (80)
T ss_dssp             THHHHHHHHHHTCCCEEEEEETTTTEETTSCBHHHHCTTCCSCEEECTTSCEEESHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCEEEEEecCCCcccCCHHHHHHhhccccceEEECCCeEEecHHHHHHHHH
Confidence            47899999999999988777532  2 223567777778899999885 677776666655533

>d1v58a1 c.47.1.9 (A:62-230) Thiol:disulfide interchange protein DsbG, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbC/DsbG C-terminal domain-like
domain: Thiol:disulfide interchange protein DsbG, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.19  Score=37.25  Aligned_cols=33  Identities=24%  Similarity=0.229  Sum_probs=24.4

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHH----HhCCCCeEEEEcc
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQIL----RMHDVPYDSHDVL   80 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL----~~~gV~~~e~DI~   80 (205)
                      .|++|+.     +.||+|++.-..+    +...+.+..+++.
T Consensus        39 tv~vF~D-----~~CP~C~~~~~~l~~l~~~~~v~v~~~~~~   75 (169)
T d1v58a1          39 IVYVFAD-----PFCPYCKQFWQQARPWVDSGKVQLRTLLVG   75 (169)
T ss_dssp             EEEEEEC-----TTCHHHHHHHHHHHHHHHTTSEEEEEEECC
T ss_pred             EEEEEEC-----CCCcchHHHHHHHHHHHhccceeEEEEecc
Confidence            4677888     9999999766555    4446777877774

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.046  Score=38.02  Aligned_cols=54  Identities=20%  Similarity=0.407  Sum_probs=35.6

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHh----C-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE--eeCCe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRM----H-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV--FINGE  106 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~----~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv--FI~G~  106 (205)
                      +|.|..     +||++|+++...+..    +     .|.+-.+|++.++.+.+    ..+-..+|.+  |-+|+
T Consensus        28 lV~Fya-----~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~----~~~i~~~Pt~~~~~~G~   92 (120)
T d1meka_          28 LVEFYA-----PWCGHCKALAPEYAKAAGKLKAEGSEIRLAKVDATEESDLAQ----QYGVRGYPTIKFFRNGD   92 (120)
T ss_dssp             EEEEEC-----SSCSTTSTTHHHHHHHHHTTTTTCCCCBCEEEETTTCCSSHH----HHTCCSSSEEEEEESSC
T ss_pred             EEEEEC-----CCcCCccccchhhhhhcccccccccceeeeccccccchhHHH----HhCCccCCeEEEEECCe
Confidence            344666     999999988766633    2     35677888877765443    3456678876  33664

>d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: GST-like domain of elongation factor 1-gamma
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.41  E-value=0.28  Score=31.91  Aligned_cols=67  Identities=6%  Similarity=-0.076  Sum_probs=50.1

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHHhCCCCccEEeeC-CeEeechhHHHHH
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFIN-GEFVGGCDILLKL  117 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI~-G~~IGG~del~~l  117 (205)
                      ...++|+.     +. +....++.+++..+++|+.++...   ..+++.++.-..++|.+..+ |..|-....+.+.
T Consensus         2 s~~tLY~~-----~~-~rs~~~~~~l~~~~~d~~~~~~~~---~~~~~~~~nP~gkVP~L~~~~g~~l~ES~aI~~Y   69 (75)
T d1nhya2           2 SQGTLYAN-----FR-IRTWVPRGLVKALKLDVKVVTPDA---AAEQFARDFPLKKVPAFVGPKGYKLTEAMAINYY   69 (75)
T ss_dssp             TTCEEECC-----SS-HHHHHHHHHHHHHTCCCEEECGGG---CHHHHHHHCTTCCSSEEECGGGCEEESHHHHHHH
T ss_pred             CCeEEecC-----CC-chHHHHHHHHHhcCccccccCccc---CCHHHHHhCcCCCCCeEEeCCeeEecCHHHHHHH
Confidence            45688987     55 568899999999999998876543   34577778888899999864 7777666655443

>d1duga2 c.47.1.5 (A:1-80) Class alpha GST {Schistosoma japonicum [TaxId: 6182]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Schistosoma japonicum [TaxId: 6182]

Probab=92.04  E-value=0.46  Score=30.77  Aligned_cols=69  Identities=14%  Similarity=0.222  Sum_probs=46.5

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHh-HHHHHHHHh--CCCCccEEeeCCeEeechhHHHHH
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDES-IRNGIKEYT--SWPTIPQVFINGEFVGGCDILLKL  117 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~-~~~eL~~~~--g~~tvPqvFI~G~~IGG~del~~l  117 (205)
                      |+..|.. +     =..++.++-+|+..|++|+++.++.... .....+...  -...+|.+..||..+.....+.+.
T Consensus         2 P~L~Y~~-~-----rgrae~vRl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~p~~~lP~l~d~g~~l~qS~AI~ry   73 (80)
T d1duga2           2 PILGYWK-I-----KGLVQPTRLLLEYLEEKYEEHLYERDEGDKWRNKKFELGLEFPNLPYYIDGDVKLTQSMAIIRY   73 (80)
T ss_dssp             CEEEEES-S-----SGGGHHHHHHHHHHTCCCEEEEECTTCHHHHHHHTTSSCCSSCCSSEEECSSCEEESHHHHHHH
T ss_pred             CEEEEcC-C-----chhhHHHHHHHHHcCCCceEEEEecccccccchhhhhccCCCcccceeccCCeeehhHHHHHHH
Confidence            5666654 2     2456889999999999999998876432 222222222  245899999998888766665554

>d1a8la1 c.47.1.2 (A:1-119) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.04  E-value=0.09  Score=37.73  Aligned_cols=55  Identities=18%  Similarity=0.376  Sum_probs=37.3

Q ss_pred             cEEEEEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee
Q psy221           43 KVVVFMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI  103 (205)
Q Consensus        43 ~VvlYsk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI  103 (205)
                      .+++|+..    +.|++|..++++|++.     +|.++++|.+.+.  ..++.+..+-...|.+.|
T Consensus        25 ~l~~~~~~----~~~~~~~e~~~ll~ela~lSdki~~~~~~~~~~e--~~~~~~~~~ver~Ps~~i   84 (119)
T d1a8la1          25 KLIVFVRK----DHCQYCDQLKQLVQELSELTDKLSYEIVDFDTPE--GKELAKRYRIDRAPATTI   84 (119)
T ss_dssp             EEEEEECS----SSCTTHHHHHHHHHHHHTTCTTEEEEEEETTSHH--HHHHHHHTTCCSSSEEEE
T ss_pred             EEEEEecC----CCchhHHHHHHHHHHHHhhCCCeEEEEeccCcch--hhhHHHhhccccCceEEE
Confidence            34666642    5799999999999865     4567777765433  345555557677898766

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.62  Score=32.52  Aligned_cols=39  Identities=18%  Similarity=0.184  Sum_probs=27.7

Q ss_pred             cCCcEEE-EEeeCCCCCCChHHHHHHHHHHh---CCCCeEEEEccCCH
Q psy221           40 KKSKVVV-FMKGVPEAPRCGFSNAVVQILRM---HDVPYDSHDVLKDE   83 (205)
Q Consensus        40 ~~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~---~gV~~~e~DI~~d~   83 (205)
                      +..+|+| |..     +||+.|.+....|++   .++.+..++++.+.
T Consensus        19 ~Gk~vvl~Fwa-----tWC~pC~~e~p~l~~~~~~~~~vi~i~~~~~~   61 (136)
T d1z5ye1          19 QGKPVLLNVWA-----TWCPTSRAEHQYLNQLSAQGIRVVGMNYKDDR   61 (136)
T ss_dssp             SSSCEEEEEEC-----TTCHHHHHHHHHHHHHHHTTCCEEEEEESCCH
T ss_pred             CCCEEEEEEEc-----CcCCCcCccccchhhhhhhhhhhcccccccch
Confidence            4556777 555     899999987777754   46777777776653

>d2b5ea1 c.47.1.2 (A:365-504) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.08  E-value=0.095  Score=37.48  Aligned_cols=54  Identities=13%  Similarity=0.225  Sum_probs=34.4

Q ss_pred             EEEEEeeCCCCCCChHHHHHHHHHHhC-------CCCeEEEEccCCHhHHHHHHHHhCCCCccEEee--CCe
Q psy221           44 VVVFMKGVPEAPRCGFSNAVVQILRMH-------DVPYDSHDVLKDESIRNGIKEYTSWPTIPQVFI--NGE  106 (205)
Q Consensus        44 VvlYsk~~~~~~~Cp~C~~ak~lL~~~-------gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqvFI--~G~  106 (205)
                      +|.|..     +||++|+++...|+++       +..+...+++.+..    +....+-..+|.+++  +|+
T Consensus        34 lV~F~a-----~wC~~C~~~~p~~~~la~~~~~~~~~v~~~~~d~~~~----~~~~~~v~~~Ptl~~f~~g~   96 (140)
T d2b5ea1          34 LVLYYA-----PWCGHCKRLAPTYQELADTYANATSDVLIAKLDHTEN----DVRGVVIEGYPTIVLYPGGK   96 (140)
T ss_dssp             EEEEEC-----TTCHHHHHHHHHHHHHHHHHHHHCSSCEEEEEEGGGC----CCSSCCCSSSSEEEEECCTT
T ss_pred             EEEEEe-----ccCcccchhHHHHHHHHHHHhccccceEEEeeeccch----hccccccccCCeEEEEECCE
Confidence            455777     9999999998877543       33455556554432    223346678998854  553

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.63  E-value=0.36  Score=33.61  Aligned_cols=38  Identities=16%  Similarity=0.277  Sum_probs=23.7

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHh
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDES   84 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~   84 (205)
                      .+|+| |..     +|||.|.+....|.++     ++.+..++...+.+
T Consensus        26 k~vll~fwa-----~wC~~C~~~~p~l~~l~~~~~~~~~v~v~~~d~~~   69 (134)
T d1zzoa1          26 KPAVLWFWA-----PWCPTCQGEAPVVGQVAASHPEVTFVGVAGLDQVP   69 (134)
T ss_dssp             SCEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHH
T ss_pred             CEEEEEecc-----cccCcccccchhhHHHHhhhcccccccccccccch
Confidence            44555 566     9999999887776543     34455555544443

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.71  E-value=0.44  Score=33.35  Aligned_cols=55  Identities=18%  Similarity=0.224  Sum_probs=32.4

Q ss_pred             CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC-----CCCeEEEEccCCHhHHHHHHHHhCCCCccEE
Q psy221           41 KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH-----DVPYDSHDVLKDESIRNGIKEYTSWPTIPQV  101 (205)
Q Consensus        41 ~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~-----gV~~~e~DI~~d~~~~~eL~~~~g~~tvPqv  101 (205)
                      ..+|+| |..     +|||.|......|+++     ++.+..++.+.+.+..++..+..+ .++|.+
T Consensus        24 Gk~vll~F~a-----~wC~~C~~~~p~l~~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~-~~~p~~   84 (134)
T d1lu4a_          24 GKPAVLWFWT-----PWCPFCNAEAPSLSQVAAANPAVTFVGIATRADVGAMQSFVSKYN-LNFTNL   84 (134)
T ss_dssp             TSCEEEEEEC-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCHHHHHHHHHHHT-CCSEEE
T ss_pred             CCEEEEEEee-----cccCCceecchhHHHHhhhhccccccccccccchhhhhhhhhhhc-ccccee
Confidence            345655 445     9999999977777432     566767776665544333333333 244543

>d1xg8a_ c.47.1.17 (A:) Hypothetical protein SA0798 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: YuzD-like
domain: Hypothetical protein SA0798
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.40  E-value=0.82  Score=32.02  Aligned_cols=67  Identities=19%  Similarity=0.247  Sum_probs=40.1

Q ss_pred             cCCcEEEEEeeCCCCCCChHH------HHHHHHHHh-----C---CCCeEEEEccCCHh----HHHHHH-HHhC-CCCcc
Q psy221           40 KKSKVVVFMKGVPEAPRCGFS------NAVVQILRM-----H---DVPYDSHDVLKDES----IRNGIK-EYTS-WPTIP   99 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C------~~ak~lL~~-----~---gV~~~e~DI~~d~~----~~~eL~-~~~g-~~tvP   99 (205)
                      +...|+||+..    ..|+-|      +...+.|+.     +   ...|+.+||...++    ..+++. ++.. .--+|
T Consensus         6 ~~v~i~VYGA~----~iCASCV~aPSSkeTyEWLqaal~RKyp~~~f~~~YiDi~~~~~~~~~~~~~~ae~I~ede~FYP   81 (111)
T d1xg8a_           6 QSNAVVVYGAD----VICASCVNAPTSKDIYDWLQPLLKRKYPNISFKYTYIDITKDNDNLTDHDLQFIERIEQDELFYP   81 (111)
T ss_dssp             SCEEEEEEECS----SCCGGGSSSCCHHHHHHHHHHHHHHHCTTSCEEEEEEETTTC---CCHHHHHHHHHHHTTSSCSS
T ss_pred             ceeEEEEEccc----ccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEeccCCcccccHHHHHHHHHHhhccceee
Confidence            45678899774    457766      344455532     2   33577888865442    222333 3333 34679


Q ss_pred             EEeeCCeEeec
Q psy221          100 QVFINGEFVGG  110 (205)
Q Consensus       100 qvFI~G~~IGG  110 (205)
                      .|.|+|+.||-
T Consensus        82 lV~i~~eiVaE   92 (111)
T d1xg8a_          82 LITMNDEYVAD   92 (111)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCEEeec
Confidence            99999999974

>d1fvka_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=87.15  E-value=0.82  Score=33.13  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=23.8

Q ss_pred             CcEEEEEeeCCCCCCChHHHHHHHHH----H-----hCCCCeEEEEcc
Q psy221           42 SKVVVFMKGVPEAPRCGFSNAVVQIL----R-----MHDVPYDSHDVL   80 (205)
Q Consensus        42 ~~VvlYsk~~~~~~~Cp~C~~ak~lL----~-----~~gV~~~e~DI~   80 (205)
                      ..||-|..     -+||+|.+....|    +     ..++.+..+++.
T Consensus        20 ~~VvEffd-----y~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   62 (188)
T d1fvka_          20 PQVLEFFS-----FFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVN   62 (188)
T ss_dssp             CSEEEEEC-----TTCHHHHHHHHTTCHHHHHHTTSCTTCCEEEEECS
T ss_pred             CEEEEEEC-----CCChhhHHHHHHHHHHHHHhhccCCceEEEEEecC
Confidence            46888888     8999999876543    2     114667777664

>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica [TaxId: 6192]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Class alpha GST
species: Fasciola hepatica [TaxId: 6192]

Probab=86.51  E-value=0.47  Score=30.74  Aligned_cols=58  Identities=12%  Similarity=0.123  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHhCCCCeEEEEccCCH--hHHHHHHH-HhCCCCccEEeeCCeEeechhHHHH
Q psy221           59 FSNAVVQILRMHDVPYDSHDVLKDE--SIRNGIKE-YTSWPTIPQVFINGEFVGGCDILLK  116 (205)
Q Consensus        59 ~C~~ak~lL~~~gV~~~e~DI~~d~--~~~~eL~~-~~g~~tvPqvFI~G~~IGG~del~~  116 (205)
                      .++.++-+|+..||+|+.+.++.+.  +..+.... ......+|.+..+|..|.....+.+
T Consensus        12 rae~iRl~L~~~gv~ye~~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~g~~l~qS~AI~~   72 (80)
T d1fhea2          12 LAQPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYIDDKCKLTQSVAIMR   72 (80)
T ss_dssp             TTHHHHHHHHHTTCCCEEEEECSTTSHHHHTTTTTSCCSSCCSSEEECSSCEEESTTHHHH
T ss_pred             HHHHHHHHHHHcCCCCEEEEeccccchhcchhhhhccCCCcceeeeecCCeEEeCHHHHHH
Confidence            4679999999999999999987652  22111111 1235578999888877765544444

>d2fnoa2 c.47.1.5 (A:1-87) Hypothetical protein AGR_pAT_752p/Atu5508 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione S-transferase (GST), N-terminal domain
domain: Hypothetical protein AGR pAT 752p/Atu5508
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.06  E-value=0.31  Score=32.38  Aligned_cols=70  Identities=14%  Similarity=0.120  Sum_probs=45.6

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHH--HHHHHhCCCCccEEeeCC-e-EeechhHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRN--GIKEYTSWPTIPQVFING-E-FVGGCDILL  115 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~--eL~~~~g~~tvPqvFI~G-~-~IGG~del~  115 (205)
                      ++.+++|--     +.-..++.++-+|+..|++|+.+.++.....++  +.+.......+|.+.+++ . .|.-...+.
T Consensus         5 M~~~~L~Y~-----~~~g~~e~vRl~L~~~g~~ye~~~~~~~~~~~~~~~~~~~~p~~~~P~l~~~~g~~~l~qS~AI~   78 (87)
T d2fnoa2           5 MNTFDLYYW-----PVPFRGQLIRGILAHCGCSWDEHDVDAIEGLMDCGAEKQPVAFMGPPVLIDRERNFAISQMPAIA   78 (87)
T ss_dssp             CBSEEEECC-----SSSSTTHHHHHHHHHTTCCEECCCHHHHHHHHHSCGGGSSSCCSSSCEEEETTTTEEEESHHHHH
T ss_pred             CCCeEEEEC-----CCCcchHHHHHHHHHHhCcceeeccchhHHHHHhhcccccCCCCCCCEEEecCCCeeeehHHHHH
Confidence            456888877     555667999999999999999877754332211  222333466899999864 2 444444333

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=85.45  E-value=0.24  Score=35.41  Aligned_cols=77  Identities=9%  Similarity=0.150  Sum_probs=50.4

Q ss_pred             ChHHHHHHHHHhcC-CcEEEEEeeCCCCCCChHHHHHHHHHHhCCCCeEEEEccCCHhHHHHHHHH-hCCCCccEEeeCC
Q psy221           28 STDVQKSIDEMVKK-SKVVVFMKGVPEAPRCGFSNAVVQILRMHDVPYDSHDVLKDESIRNGIKEY-TSWPTIPQVFING  105 (205)
Q Consensus        28 ~~~~~~~l~~~~~~-~~VvlYsk~~~~~~~Cp~C~~ak~lL~~~gV~~~e~DI~~d~~~~~eL~~~-~g~~tvPqvFI~G  105 (205)
                      -..+.+.++++.++ +.|+++|.     ..=.......+.|+.++++|+.++......  ....++ +|.+. =-+|||+
T Consensus        23 i~~~Ie~l~~L~~~G~~IIi~Ta-----R~~~~~~~t~~wL~~~~i~yd~i~~~~~~~--~~~~~~~~~Kp~-ad~yIDD   94 (122)
T d2obba1          23 IPFAVETLKLLQQEKHRLILWSV-----REGELLDEAIEWCRARGLEFYAANKDYPEE--ERDHQGFSRKLK-ADLFIDD   94 (122)
T ss_dssp             CTTHHHHHHHHHHTTCEEEECCS-----CCHHHHHHHHHHHHTTTCCCSEESSSSTTC-----CCSCCSSCC-CSEEECT
T ss_pred             cHHHHHHHHHHHHCCCeEEEEec-----CCCcchHHHHHHHHHcCCCceehhccCccC--ccccceecCCcc-ccEEEeC
Confidence            34578888888776 67777765     344566788999999999999887544321  111122 23333 3589999


Q ss_pred             eEeechh
Q psy221          106 EFVGGCD  112 (205)
Q Consensus       106 ~~IGG~d  112 (205)
                      +-|+++.
T Consensus        95 Kai~~~~  101 (122)
T d2obba1          95 RNVGGIP  101 (122)
T ss_dssp             TSTTCCC
T ss_pred             CcccCCC
Confidence            9887544

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.38  E-value=2.2  Score=30.10  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=22.7

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHHH----hC--CCCeEEEEccCC
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQILR----MH--DVPYDSHDVLKD   82 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL~----~~--gV~~~e~DI~~d   82 (205)
                      +...|+||.-.    +||+.|.+....|.    ++  +..++.+-|+.|
T Consensus        27 ~GK~vll~FwA----tWC~pC~~~~p~L~~l~~~~~~~~~~~vi~vs~D   71 (144)
T d1i5ga_          27 AGKTVFFYFSA----SWCPPSRAFTPQLIDFYKAHAEKKNFEVMLISWD   71 (144)
T ss_dssp             TTSEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEECC
T ss_pred             CCCEEEEEEEe----cCCchHhhhhHhHHHHHHHHHhccCcEEEEEecc
Confidence            44566664443    89999997665553    33  234555555443

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.22  E-value=1.8  Score=29.99  Aligned_cols=23  Identities=13%  Similarity=0.242  Sum_probs=16.0

Q ss_pred             CCcEEEEEeeCCCCCCChHHHHHHHHH
Q psy221           41 KSKVVVFMKGVPEAPRCGFSNAVVQIL   67 (205)
Q Consensus        41 ~~~VvlYsk~~~~~~~Cp~C~~ak~lL   67 (205)
                      ...|+||..+    +||+.|......|
T Consensus        26 GK~vll~Fwa----~wC~~C~~~~~~l   48 (144)
T d1o8xa_          26 GKLVFFYFSA----SWCPPARGFTPQL   48 (144)
T ss_dssp             TCEEEEEEEC----TTCHHHHHHHHHH
T ss_pred             CCEEEEEecc----ccccccccccchh
Confidence            4456665554    8999998877554

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.59  E-value=1.3  Score=30.54  Aligned_cols=64  Identities=16%  Similarity=0.129  Sum_probs=36.2

Q ss_pred             HHHHhcCCc--EEEEEeeCCCCCCChHHH-----HHHHHHHhC--CCCeEEEEccCC-HhHHHHHHHHhCC--CCccEEe
Q psy221           35 IDEMVKKSK--VVVFMKGVPEAPRCGFSN-----AVVQILRMH--DVPYDSHDVLKD-ESIRNGIKEYTSW--PTIPQVF  102 (205)
Q Consensus        35 l~~~~~~~~--VvlYsk~~~~~~~Cp~C~-----~ak~lL~~~--gV~~~e~DI~~d-~~~~~eL~~~~g~--~tvPqvF  102 (205)
                      +++++.+++  +|.|..     +||++|+     ++-+.+.+.  .+.+-.+|++.. ...-.+|....+-  ..+|.++
T Consensus        12 Fd~~v~~~~~~lV~Fya-----~wC~~ck~p~f~kla~~~~~~~~~v~ia~Vd~~~~~~~~n~~l~~~~~i~~~~~PTi~   86 (122)
T d2c0ga2          12 FEKTVERFPYSVVKFDI-----ASPYGEKHEAFTAFSKSAHKATKDLLIATVGVKDYGELENKALGDRYKVDDKNFPSIF   86 (122)
T ss_dssp             HHHHHTTSSEEEEEEEE-----SSCCSHHHHHHHHHHHHHHHHCSSEEEEEEEECSSTTCTTHHHHHHTTCCTTSCCEEE
T ss_pred             HHHHHhcCCcEEEEEEC-----CCCCcccCHHHHHHHHHHHHhCCCeEEEeccccccccccCHHHHHHhhcccCCCCcEE
Confidence            456666654  455778     9999996     333333332  345667777542 1222445544443  4689884


Q ss_pred             e
Q psy221          103 I  103 (205)
Q Consensus       103 I  103 (205)
                      +
T Consensus        87 ~   87 (122)
T d2c0ga2          87 L   87 (122)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1sena_ c.47.1.1 (A:) Thioredoxin-like protein p19, TLP19 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein p19, TLP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.79  E-value=0.41  Score=33.53  Aligned_cols=47  Identities=13%  Similarity=0.193  Sum_probs=30.1

Q ss_pred             HHHHHHHHhc-CCcEEE-EEeeCCCCCCChHHHHHHHHHHhC------CCCeEEEEccCC
Q psy221           31 VQKSIDEMVK-KSKVVV-FMKGVPEAPRCGFSNAVVQILRMH------DVPYDSHDVLKD   82 (205)
Q Consensus        31 ~~~~l~~~~~-~~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~------gV~~~e~DI~~d   82 (205)
                      .++.+....+ ..+|+| |..     +||++|++....+.+.      ...|..+.|+.+
T Consensus        14 ~~~al~~A~~~~Kpvlv~F~a-----~wC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~   68 (135)
T d1sena_          14 LEDGKKEAAASGLPLMVIIHK-----SWCGACKALKPKFAESTEISELSHNFVMVNLEDE   68 (135)
T ss_dssp             HHHHHHHHHHHTCCEEEEEEC-----TTCHHHHHHHHHHHTCHHHHHHHTTSEEEEEEGG
T ss_pred             HHHHHHHHHHcCCcEEEEEEe-----cCCCCceecchhhhhhHHHHHhcCCcEEEeCCCC
Confidence            5555665554 345555 555     9999999999977432      345666666543

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=83.47  E-value=3.1  Score=29.00  Aligned_cols=38  Identities=11%  Similarity=0.205  Sum_probs=22.1

Q ss_pred             cCCcEEEEEeeCCCCCCChHHHHHHHHH----HhC--CCCeEEEEccC
Q psy221           40 KKSKVVVFMKGVPEAPRCGFSNAVVQIL----RMH--DVPYDSHDVLK   81 (205)
Q Consensus        40 ~~~~VvlYsk~~~~~~~Cp~C~~ak~lL----~~~--gV~~~e~DI~~   81 (205)
                      +...|+|+.-.    +||+.|.+....|    +++  +..++.+-|+.
T Consensus        27 ~GK~vvl~Fwa----twC~~C~~~~p~l~~l~~~~~~~~~~~vi~is~   70 (144)
T d1o73a_          27 VGKTVFLYFSA----SWCPPCRGFTPVLAEFYEKHHVAKNFEVVLISW   70 (144)
T ss_dssp             TTCEEEEEEEC----TTCHHHHHHHHHHHHHHHHHTTTTTEEEEEEEC
T ss_pred             CCCEEEEEeCh----hhCccchhhhHHHHHHHHHHhhccCeEEEEEec
Confidence            34556665443    8999998776555    333  23455554443

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=83.42  E-value=2.5  Score=29.40  Aligned_cols=36  Identities=8%  Similarity=0.005  Sum_probs=23.2

Q ss_pred             CcEEE-EEeeCCCCCCChHHHHHHHHHHhC----CCCeEEEEccCC
Q psy221           42 SKVVV-FMKGVPEAPRCGFSNAVVQILRMH----DVPYDSHDVLKD   82 (205)
Q Consensus        42 ~~Vvl-Ysk~~~~~~~Cp~C~~ak~lL~~~----gV~~~e~DI~~d   82 (205)
                      ..|+| |..     .||+.|......|..+    ++.+..+.+...
T Consensus        32 K~vll~fwa-----~wC~~C~~~~p~l~~l~~~~~~~~~~i~~~~~   72 (144)
T d1knga_          32 KVSLVNVWA-----SWCVPCHDEAPLLTELGKDKRFQLVGINYKDA   72 (144)
T ss_dssp             SCEEEEEEC-----TTCHHHHHHHHHHHHHTTCTTSEEEEEEESCC
T ss_pred             CEEEEEeec-----cccccccccCchhhhhhhccCceeEEEEeeec
Confidence            45555 555     8999999888887654    444444554443

>d1un2a_ c.47.1.13 (A:) Disulfide-bond formation facilitator (DsbA) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: DsbA-like
domain: Disulfide-bond formation facilitator (DsbA)
species: Escherichia coli [TaxId: 562]

Probab=81.08  E-value=0.2  Score=38.31  Aligned_cols=50  Identities=10%  Similarity=0.244  Sum_probs=35.4

Q ss_pred             HHHHHHHHhCCCCeEEEEcc-CCHhHHHHHHH------HhCCCCccEEeeCCeEeec
Q psy221           61 NAVVQILRMHDVPYDSHDVL-KDESIRNGIKE------YTSWPTIPQVFINGEFVGG  110 (205)
Q Consensus        61 ~~ak~lL~~~gV~~~e~DI~-~d~~~~~eL~~------~~g~~tvPqvFI~G~~IGG  110 (205)
                      ..+++++.+.|+.-+..+-. .++.+.+.+.+      ..|-..+|.++|||+|+=+
T Consensus         7 ~~i~~~~~~~Gld~~~f~~~~~s~~~~~~v~~~~~~a~~~gi~GtPtfiVnGky~v~   63 (195)
T d1un2a_           7 SDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLN   63 (195)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHTSHHHHHHHHHHHHHHHHTTCCSSSEEEETTTEEEC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHcCHHHHHHHHHHHHHHHHhCCCcCCEEEECCeeeec
Confidence            57899999999986665533 33444444442      3478899999999998643